Query 044047
Match_columns 260
No_of_seqs 587 out of 1307
Neff 12.2
Searched_HMMs 46136
Date Fri Mar 29 10:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.1E-49 4.5E-54 328.9 33.1 256 3-258 490-747 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.1E-49 1.1E-53 326.6 33.2 260 1-260 523-784 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 9.2E-44 2E-48 291.6 26.7 230 19-256 258-488 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1E-43 2.2E-48 291.3 26.4 250 1-258 205-454 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 4.6E-42 1E-46 287.5 26.4 250 2-259 169-453 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 6.9E-42 1.5E-46 286.5 26.9 248 1-260 137-419 (857)
7 PRK11788 tetratricopeptide rep 99.9 1.4E-22 3E-27 157.1 29.5 252 2-258 52-310 (389)
8 PRK11788 tetratricopeptide rep 99.9 2.2E-22 4.8E-27 155.9 28.1 252 2-259 86-347 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.4E-20 3E-25 160.3 31.1 247 3-258 653-899 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 3.2E-20 7E-25 158.1 31.2 247 4-258 552-798 (899)
11 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-18 5E-23 140.4 30.7 252 2-258 311-570 (615)
12 PRK15174 Vi polysaccharide exp 99.9 3.8E-18 8.2E-23 139.1 31.1 250 2-258 93-380 (656)
13 PRK15174 Vi polysaccharide exp 99.9 6.7E-18 1.5E-22 137.7 31.0 216 2-224 161-381 (656)
14 TIGR00990 3a0801s09 mitochondr 99.8 6.8E-17 1.5E-21 131.9 30.9 251 1-258 143-495 (615)
15 PF13429 TPR_15: Tetratricopep 99.8 1.5E-19 3.2E-24 133.6 12.7 251 1-258 24-276 (280)
16 KOG4626 O-linked N-acetylgluco 99.8 4.1E-17 8.9E-22 125.3 20.5 247 3-258 236-484 (966)
17 PRK11447 cellulose synthase su 99.8 2.7E-15 5.9E-20 130.2 30.5 251 2-258 368-699 (1157)
18 PRK10747 putative protoheme IX 99.8 3E-15 6.6E-20 115.6 27.5 217 31-257 129-388 (398)
19 KOG4626 O-linked N-acetylgluco 99.8 3.8E-16 8.2E-21 120.1 20.6 248 3-259 202-451 (966)
20 PRK09782 bacteriophage N4 rece 99.8 1E-14 2.3E-19 122.5 30.5 230 19-258 476-705 (987)
21 PRK12370 invasion protein regu 99.8 5.3E-15 1.2E-19 119.0 27.5 247 2-259 278-535 (553)
22 KOG1126 DNA-binding cell divis 99.7 1.2E-15 2.7E-20 117.7 21.5 249 2-256 336-617 (638)
23 PRK11447 cellulose synthase su 99.7 7.6E-15 1.6E-19 127.5 28.9 247 2-257 478-738 (1157)
24 TIGR00540 hemY_coli hemY prote 99.7 2.3E-14 5E-19 111.3 26.8 227 27-257 160-397 (409)
25 PF13429 TPR_15: Tetratricopep 99.7 4.9E-17 1.1E-21 120.2 11.0 228 25-258 13-242 (280)
26 PRK09782 bacteriophage N4 rece 99.7 5.1E-14 1.1E-18 118.4 29.9 244 2-256 493-737 (987)
27 KOG4422 Uncharacterized conser 99.7 1.6E-14 3.5E-19 106.7 23.6 241 16-260 203-463 (625)
28 TIGR02521 type_IV_pilW type IV 99.7 3.9E-14 8.5E-19 102.0 24.8 202 53-258 29-231 (234)
29 TIGR02521 type_IV_pilW type IV 99.7 7.3E-14 1.6E-18 100.6 24.8 203 18-224 29-232 (234)
30 PRK10049 pgaA outer membrane p 99.7 2.5E-13 5.4E-18 113.4 30.5 252 2-259 32-339 (765)
31 PRK12370 invasion protein regu 99.7 6.7E-14 1.5E-18 112.7 26.1 233 18-258 254-501 (553)
32 KOG4422 Uncharacterized conser 99.7 2E-13 4.4E-18 101.0 25.1 253 2-258 224-550 (625)
33 PRK10747 putative protoheme IX 99.7 5.7E-13 1.2E-17 103.1 28.7 218 32-259 96-357 (398)
34 KOG1155 Anaphase-promoting com 99.7 4.4E-13 9.5E-18 100.0 25.9 247 3-258 245-494 (559)
35 COG2956 Predicted N-acetylgluc 99.7 4E-13 8.7E-18 95.8 24.7 219 2-223 52-277 (389)
36 COG2956 Predicted N-acetylgluc 99.7 1.3E-13 2.7E-18 98.3 21.9 222 32-259 47-278 (389)
37 KOG1129 TPR repeat-containing 99.7 3.7E-14 8E-19 101.4 18.1 228 24-258 227-457 (478)
38 PRK10049 pgaA outer membrane p 99.7 1.8E-12 3.9E-17 108.4 30.6 154 102-257 249-420 (765)
39 COG3071 HemY Uncharacterized e 99.6 3.1E-12 6.7E-17 93.8 26.7 247 2-257 101-388 (400)
40 PRK14574 hmsH outer membrane p 99.6 3E-12 6.5E-17 106.0 29.1 228 27-258 109-395 (822)
41 TIGR00540 hemY_coli hemY prote 99.6 3.5E-12 7.6E-17 99.3 27.2 245 2-255 101-360 (409)
42 PRK14574 hmsH outer membrane p 99.6 6.7E-12 1.5E-16 104.0 29.6 250 2-256 119-476 (822)
43 KOG1155 Anaphase-promoting com 99.6 3.6E-12 7.8E-17 95.2 23.2 246 1-255 278-532 (559)
44 KOG1126 DNA-binding cell divis 99.6 4.3E-13 9.2E-18 104.0 18.7 203 17-225 418-621 (638)
45 KOG4318 Bicoid mRNA stability 99.6 3.4E-13 7.4E-18 107.7 16.3 220 6-245 11-286 (1088)
46 PRK11189 lipoprotein NlpI; Pro 99.6 3.5E-11 7.5E-16 89.5 25.9 223 3-235 44-275 (296)
47 KOG1840 Kinesin light chain [C 99.6 9.5E-12 2.1E-16 96.8 23.1 239 19-257 198-477 (508)
48 KOG2003 TPR repeat-containing 99.6 5.6E-12 1.2E-16 94.4 20.9 208 32-246 502-710 (840)
49 COG3063 PilF Tfp pilus assembl 99.5 4.9E-11 1.1E-15 81.5 23.4 206 22-233 37-243 (250)
50 COG3071 HemY Uncharacterized e 99.5 1.7E-10 3.6E-15 84.9 27.2 221 32-259 96-357 (400)
51 PF13041 PPR_2: PPR repeat fam 99.5 4E-14 8.7E-19 75.4 6.2 50 193-242 1-50 (50)
52 PF13041 PPR_2: PPR repeat fam 99.5 3.7E-14 7.9E-19 75.5 6.0 49 18-66 1-49 (50)
53 KOG2003 TPR repeat-containing 99.5 9.7E-12 2.1E-16 93.2 20.6 188 66-259 501-689 (840)
54 KOG1129 TPR repeat-containing 99.5 3.8E-12 8.2E-17 91.3 17.5 217 2-224 240-458 (478)
55 PF12569 NARP1: NMDA receptor- 99.5 1.7E-10 3.8E-15 90.8 28.4 253 2-258 21-333 (517)
56 KOG2076 RNA polymerase III tra 99.5 1.1E-10 2.4E-15 93.8 27.3 252 1-256 155-509 (895)
57 KOG1173 Anaphase-promoting com 99.5 5.2E-11 1.1E-15 91.1 22.4 249 3-257 262-516 (611)
58 COG3063 PilF Tfp pilus assembl 99.5 1.6E-10 3.4E-15 79.1 21.8 198 56-257 36-234 (250)
59 PRK11189 lipoprotein NlpI; Pro 99.5 1.3E-10 2.8E-15 86.5 23.6 218 33-259 39-265 (296)
60 KOG0547 Translocase of outer m 99.5 1.2E-10 2.6E-15 87.9 21.6 224 29-257 335-564 (606)
61 KOG0547 Translocase of outer m 99.4 2.3E-10 5E-15 86.4 21.3 215 3-223 344-565 (606)
62 KOG2076 RNA polymerase III tra 99.4 3.1E-09 6.8E-14 85.8 26.8 236 20-258 139-477 (895)
63 KOG1840 Kinesin light chain [C 99.4 4.6E-10 1E-14 87.6 21.3 222 1-222 215-477 (508)
64 KOG0495 HAT repeat protein [RN 99.4 2.1E-09 4.5E-14 84.3 24.4 246 4-256 603-877 (913)
65 KOG2002 TPR-containing nuclear 99.4 4.5E-09 9.6E-14 85.7 26.7 251 4-258 255-524 (1018)
66 KOG1173 Anaphase-promoting com 99.4 4.8E-10 1E-14 86.0 20.0 226 10-242 303-534 (611)
67 PF12569 NARP1: NMDA receptor- 99.3 1.1E-08 2.3E-13 80.9 27.2 225 26-258 10-290 (517)
68 KOG1174 Anaphase-promoting com 99.3 9.5E-09 2.1E-13 76.5 24.0 236 16-259 228-500 (564)
69 KOG2002 TPR-containing nuclear 99.3 1.3E-09 2.7E-14 88.7 20.7 229 25-257 501-743 (1018)
70 KOG0495 HAT repeat protein [RN 99.3 1.8E-08 3.9E-13 79.2 25.8 246 6-258 571-845 (913)
71 cd05804 StaR_like StaR_like; a 99.3 2.6E-08 5.5E-13 76.7 26.6 254 2-258 60-335 (355)
72 PF04733 Coatomer_E: Coatomer 99.3 4.7E-10 1E-14 82.6 15.5 225 19-258 34-264 (290)
73 KOG1125 TPR repeat-containing 99.3 1.1E-09 2.3E-14 84.4 17.5 221 27-257 292-525 (579)
74 KOG4318 Bicoid mRNA stability 99.3 1.4E-10 3.1E-15 93.2 13.3 202 41-260 11-266 (1088)
75 PLN02789 farnesyltranstransfer 99.3 4.4E-08 9.6E-13 73.2 25.6 230 22-257 39-300 (320)
76 cd05804 StaR_like StaR_like; a 99.2 7.9E-08 1.7E-12 74.0 27.1 228 26-258 49-292 (355)
77 PF04733 Coatomer_E: Coatomer 99.2 1.9E-09 4.1E-14 79.4 16.1 218 27-259 8-230 (290)
78 KOG1125 TPR repeat-containing 99.2 2.2E-08 4.8E-13 77.4 21.8 244 2-252 302-564 (579)
79 KOG1128 Uncharacterized conser 99.2 4.5E-09 9.7E-14 83.2 18.5 221 17-258 395-615 (777)
80 TIGR03302 OM_YfiO outer membra 99.2 2.5E-08 5.5E-13 72.1 20.4 186 19-224 32-232 (235)
81 COG5010 TadD Flp pilus assembl 99.2 1.6E-08 3.6E-13 70.7 18.1 164 54-222 66-229 (257)
82 PRK10370 formate-dependent nit 99.2 4.3E-08 9.4E-13 68.4 19.9 155 62-232 23-180 (198)
83 PLN02789 farnesyltranstransfer 99.2 1.2E-07 2.6E-12 70.9 23.3 201 2-208 54-268 (320)
84 TIGR03302 OM_YfiO outer membra 99.1 5.2E-08 1.1E-12 70.4 20.4 187 53-259 31-232 (235)
85 KOG1070 rRNA processing protei 99.1 1.9E-07 4.1E-12 79.3 25.3 240 8-252 1447-1693(1710)
86 KOG4162 Predicted calmodulin-b 99.1 6.1E-07 1.3E-11 72.0 25.7 253 2-258 461-782 (799)
87 KOG1915 Cell cycle control pro 99.1 8.5E-07 1.8E-11 67.6 25.1 242 8-257 311-583 (677)
88 COG5010 TadD Flp pilus assembl 99.1 3.6E-08 7.8E-13 69.1 16.6 165 19-188 66-230 (257)
89 PRK15359 type III secretion sy 99.1 1.4E-08 3E-13 67.2 14.0 96 23-120 27-122 (144)
90 KOG1070 rRNA processing protei 99.1 1.2E-07 2.5E-12 80.5 21.9 204 52-260 1455-1664(1710)
91 PRK10370 formate-dependent nit 99.1 2.5E-08 5.4E-13 69.6 14.7 161 27-204 23-186 (198)
92 KOG1915 Cell cycle control pro 99.0 1.8E-06 3.8E-11 66.0 24.7 249 2-258 90-350 (677)
93 PF12854 PPR_1: PPR repeat 99.0 3.9E-10 8.4E-15 54.1 3.8 32 15-46 2-33 (34)
94 PRK15179 Vi polysaccharide bio 99.0 6.9E-07 1.5E-11 73.5 24.3 147 51-201 82-228 (694)
95 PRK15179 Vi polysaccharide bio 99.0 8.8E-08 1.9E-12 78.6 18.8 147 16-166 82-228 (694)
96 PF12854 PPR_1: PPR repeat 99.0 6.2E-10 1.3E-14 53.4 3.8 32 225-256 2-33 (34)
97 KOG1174 Anaphase-promoting com 99.0 2.9E-06 6.4E-11 63.7 23.3 217 2-224 249-500 (564)
98 PRK15359 type III secretion sy 99.0 1.2E-07 2.7E-12 62.6 14.9 26 162-187 60-85 (144)
99 PRK14720 transcript cleavage f 99.0 6.8E-07 1.5E-11 74.6 21.7 216 17-241 28-268 (906)
100 KOG4340 Uncharacterized conser 98.9 8.4E-08 1.8E-12 68.7 13.9 228 23-258 13-269 (459)
101 KOG1128 Uncharacterized conser 98.9 1.3E-07 2.7E-12 75.3 15.9 210 20-241 424-634 (777)
102 TIGR02552 LcrH_SycD type III s 98.9 2.6E-07 5.7E-12 60.6 14.4 98 125-224 17-114 (135)
103 TIGR02552 LcrH_SycD type III s 98.9 1.9E-07 4.2E-12 61.2 13.7 96 21-118 18-113 (135)
104 KOG1156 N-terminal acetyltrans 98.9 5.3E-06 1.2E-10 65.6 23.0 229 5-241 27-264 (700)
105 KOG3081 Vesicle coat complex C 98.9 1.4E-06 3E-11 61.5 17.9 148 91-249 109-260 (299)
106 KOG1156 N-terminal acetyltrans 98.9 3.1E-06 6.6E-11 66.9 21.5 234 21-260 9-249 (700)
107 PRK04841 transcriptional regul 98.9 8.7E-06 1.9E-10 70.6 26.4 257 2-258 469-759 (903)
108 COG4783 Putative Zn-dependent 98.9 4.7E-06 1E-10 63.8 21.3 110 67-179 318-427 (484)
109 PRK14720 transcript cleavage f 98.8 9.8E-07 2.1E-11 73.7 19.0 199 53-259 29-252 (906)
110 KOG4162 Predicted calmodulin-b 98.8 9.8E-06 2.1E-10 65.3 22.8 245 9-256 312-573 (799)
111 KOG4340 Uncharacterized conser 98.8 7.4E-07 1.6E-11 64.0 15.1 194 56-260 11-208 (459)
112 COG4783 Putative Zn-dependent 98.8 7.2E-06 1.6E-10 62.8 20.5 121 99-222 315-435 (484)
113 KOG3060 Uncharacterized conser 98.8 1.4E-05 3E-10 56.2 21.0 84 103-188 99-182 (289)
114 KOG3081 Vesicle coat complex C 98.8 1.3E-05 2.8E-10 56.8 20.1 156 58-224 111-271 (299)
115 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.5E-06 3.4E-11 66.5 16.8 123 59-187 173-295 (395)
116 KOG0624 dsRNA-activated protei 98.7 3E-05 6.5E-10 57.1 21.9 226 28-259 114-370 (504)
117 KOG3785 Uncharacterized conser 98.7 2.2E-05 4.8E-10 58.1 20.8 117 136-257 370-488 (557)
118 PF09976 TPR_21: Tetratricopep 98.7 3.8E-06 8.2E-11 55.8 14.8 124 128-255 15-143 (145)
119 KOG2047 mRNA splicing factor [ 98.7 8.6E-05 1.9E-09 59.2 23.8 164 93-257 390-613 (835)
120 PRK04841 transcriptional regul 98.7 5.9E-05 1.3E-09 65.6 25.7 233 26-258 458-719 (903)
121 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2.3E-06 5E-11 65.6 14.9 120 96-222 175-295 (395)
122 KOG3617 WD40 and TPR repeat-co 98.7 1E-05 2.2E-10 66.1 18.4 210 19-256 756-993 (1416)
123 PF09976 TPR_21: Tetratricopep 98.7 4.7E-06 1E-10 55.3 14.4 125 22-150 14-143 (145)
124 KOG3060 Uncharacterized conser 98.7 4.4E-05 9.5E-10 53.8 21.7 185 2-190 29-221 (289)
125 PF10037 MRP-S27: Mitochondria 98.6 1.8E-06 3.9E-11 66.5 13.3 119 88-206 64-184 (429)
126 KOG2047 mRNA splicing factor [ 98.6 0.00014 3.1E-09 58.0 23.4 201 21-223 388-614 (835)
127 KOG3785 Uncharacterized conser 98.6 1.4E-05 3.1E-10 59.0 16.6 199 25-233 290-497 (557)
128 PF10037 MRP-S27: Mitochondria 98.6 2.2E-06 4.7E-11 66.1 13.0 124 15-138 61-186 (429)
129 TIGR00756 PPR pentatricopeptid 98.6 1.5E-07 3.2E-12 45.7 4.4 33 57-89 2-34 (35)
130 KOG0985 Vesicle coat protein c 98.6 3.4E-05 7.4E-10 64.5 19.6 182 54-255 1103-1304(1666)
131 TIGR00756 PPR pentatricopeptid 98.6 1.4E-07 3.1E-12 45.8 4.1 33 197-229 2-34 (35)
132 KOG2376 Signal recognition par 98.6 7.2E-05 1.6E-09 58.9 20.3 218 26-260 18-254 (652)
133 KOG2376 Signal recognition par 98.6 0.00014 2.9E-09 57.4 21.8 216 1-231 28-259 (652)
134 KOG2053 Mitochondrial inherita 98.5 0.00029 6.4E-09 58.2 24.0 216 3-225 27-256 (932)
135 KOG0548 Molecular co-chaperone 98.5 7.7E-05 1.7E-09 58.0 19.5 205 23-234 227-463 (539)
136 PF13812 PPR_3: Pentatricopept 98.5 2.4E-07 5.3E-12 44.6 4.3 31 57-87 3-33 (34)
137 TIGR02795 tol_pal_ybgF tol-pal 98.5 8.3E-06 1.8E-10 52.0 12.7 99 22-120 4-106 (119)
138 KOG0985 Vesicle coat protein c 98.5 6E-05 1.3E-09 63.1 19.7 204 19-243 1103-1326(1666)
139 PF13812 PPR_3: Pentatricopept 98.5 2.7E-07 5.8E-12 44.4 4.2 33 196-228 2-34 (34)
140 KOG0548 Molecular co-chaperone 98.5 0.00026 5.6E-09 55.2 21.9 184 2-190 241-456 (539)
141 PF08579 RPM2: Mitochondrial r 98.5 2.6E-06 5.5E-11 52.1 8.7 79 24-102 29-116 (120)
142 PRK15363 pathogenicity island 98.5 1.1E-05 2.3E-10 53.1 12.0 94 23-118 38-131 (157)
143 KOG1127 TPR repeat-containing 98.5 5.7E-05 1.2E-09 63.0 18.4 217 35-257 473-698 (1238)
144 cd00189 TPR Tetratricopeptide 98.5 5.9E-06 1.3E-10 50.1 10.5 94 23-118 3-96 (100)
145 PF05843 Suf: Suppressor of fo 98.4 2E-05 4.4E-10 58.3 14.5 129 57-188 3-135 (280)
146 cd00189 TPR Tetratricopeptide 98.4 8.1E-06 1.7E-10 49.5 10.4 24 198-221 71-94 (100)
147 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.2E-05 6.9E-10 49.3 13.3 98 127-224 4-105 (119)
148 PF05843 Suf: Suppressor of fo 98.4 1.8E-05 3.8E-10 58.6 13.3 145 91-240 2-150 (280)
149 PRK15363 pathogenicity island 98.4 7.2E-05 1.6E-09 49.2 14.1 95 128-224 38-132 (157)
150 PRK10866 outer membrane biogen 98.4 0.00032 7E-09 50.8 19.7 184 54-257 31-239 (243)
151 PLN03088 SGT1, suppressor of 98.4 2.7E-05 5.9E-10 59.7 13.8 93 26-120 8-100 (356)
152 PF08579 RPM2: Mitochondrial r 98.4 1.3E-05 2.8E-10 49.1 9.5 78 165-242 30-116 (120)
153 PLN03088 SGT1, suppressor of 98.3 4.3E-05 9.3E-10 58.7 14.6 92 97-190 9-100 (356)
154 CHL00033 ycf3 photosystem I as 98.3 2E-05 4.4E-10 53.7 11.7 81 55-136 35-117 (168)
155 PRK10866 outer membrane biogen 98.3 0.00042 9.1E-09 50.2 19.5 185 19-223 31-240 (243)
156 PF12895 Apc3: Anaphase-promot 98.3 1.5E-06 3.2E-11 51.8 5.1 79 104-184 3-82 (84)
157 PRK02603 photosystem I assembl 98.3 6.5E-05 1.4E-09 51.5 13.9 88 55-143 35-124 (172)
158 PF12895 Apc3: Anaphase-promot 98.3 3.5E-06 7.6E-11 50.1 6.8 81 138-220 2-83 (84)
159 KOG1914 mRNA cleavage and poly 98.3 0.00034 7.4E-09 54.8 18.3 150 36-187 347-499 (656)
160 KOG2053 Mitochondrial inherita 98.3 0.0014 3.1E-08 54.4 25.2 223 31-260 20-256 (932)
161 PRK10153 DNA-binding transcrip 98.3 0.00015 3.2E-09 58.3 16.8 143 86-233 333-489 (517)
162 KOG1914 mRNA cleavage and poly 98.3 0.001 2.2E-08 52.3 23.9 152 71-224 347-501 (656)
163 PF01535 PPR: PPR repeat; Int 98.3 1.1E-06 2.4E-11 41.2 3.0 29 232-260 2-30 (31)
164 KOG1127 TPR repeat-containing 98.3 0.00017 3.7E-09 60.4 16.9 166 20-188 492-658 (1238)
165 PF14938 SNAP: Soluble NSF att 98.3 0.00038 8.2E-09 51.8 17.7 168 21-189 36-225 (282)
166 PRK02603 photosystem I assembl 98.3 0.00023 4.9E-09 48.8 15.2 85 92-177 37-123 (172)
167 KOG3616 Selective LIM binding 98.3 0.00018 3.8E-09 58.7 16.3 78 62-150 739-816 (1636)
168 CHL00033 ycf3 photosystem I as 98.3 4.7E-05 1E-09 51.9 11.8 108 5-113 19-136 (168)
169 PF01535 PPR: PPR repeat; Int 98.2 2.2E-06 4.8E-11 40.1 3.5 26 58-83 3-28 (31)
170 KOG3617 WD40 and TPR repeat-co 98.2 0.00014 3.1E-09 59.8 15.2 209 19-255 725-963 (1416)
171 PF06239 ECSIT: Evolutionarily 98.1 0.00017 3.7E-09 50.0 12.2 103 122-243 44-151 (228)
172 PF13414 TPR_11: TPR repeat; P 98.1 2.2E-05 4.8E-10 44.7 7.0 65 19-84 2-67 (69)
173 PRK10153 DNA-binding transcrip 98.1 0.00039 8.5E-09 56.0 16.2 142 52-198 334-489 (517)
174 COG4235 Cytochrome c biogenesi 98.1 0.00052 1.1E-08 49.9 15.2 105 117-224 149-256 (287)
175 PF14938 SNAP: Soluble NSF att 98.1 0.0011 2.4E-08 49.3 17.4 196 34-247 29-251 (282)
176 KOG0553 TPR repeat-containing 98.1 9.7E-05 2.1E-09 53.4 11.0 85 102-188 93-177 (304)
177 PF14559 TPR_19: Tetratricopep 98.1 1.1E-05 2.4E-10 45.8 5.2 52 32-84 3-54 (68)
178 PF06239 ECSIT: Evolutionarily 98.1 8E-05 1.7E-09 51.5 10.0 89 52-140 44-153 (228)
179 KOG0553 TPR repeat-containing 98.1 0.00014 3E-09 52.6 11.1 103 133-240 89-192 (304)
180 PF12688 TPR_5: Tetratrico pep 98.0 0.00088 1.9E-08 42.5 13.6 21 167-187 45-65 (120)
181 PF13432 TPR_16: Tetratricopep 98.0 4.4E-05 9.4E-10 42.9 6.9 58 26-84 3-60 (65)
182 PF14559 TPR_19: Tetratricopep 98.0 7.1E-05 1.5E-09 42.4 7.8 51 138-189 4-54 (68)
183 PF12688 TPR_5: Tetratrico pep 98.0 0.00073 1.6E-08 42.9 12.7 22 61-82 44-65 (120)
184 KOG2796 Uncharacterized conser 98.0 0.00061 1.3E-08 48.6 13.2 131 58-189 180-315 (366)
185 KOG3616 Selective LIM binding 98.0 0.0018 3.9E-08 53.1 16.7 192 29-254 741-932 (1636)
186 PF13525 YfiO: Outer membrane 98.0 0.0019 4.1E-08 45.6 15.4 62 23-84 8-71 (203)
187 COG4235 Cytochrome c biogenesi 97.9 0.0017 3.8E-08 47.3 14.8 111 89-203 155-268 (287)
188 PF13432 TPR_16: Tetratricopep 97.9 8E-05 1.7E-09 41.8 6.6 58 166-224 3-60 (65)
189 PF13414 TPR_11: TPR repeat; P 97.9 9.2E-05 2E-09 42.1 6.8 61 196-257 4-65 (69)
190 PF13525 YfiO: Outer membrane 97.9 0.0034 7.4E-08 44.3 17.3 183 57-250 7-198 (203)
191 KOG0550 Molecular chaperone (D 97.9 0.0046 1E-07 47.1 16.8 249 3-258 67-349 (486)
192 KOG2796 Uncharacterized conser 97.9 0.0012 2.5E-08 47.3 12.9 133 22-155 179-316 (366)
193 KOG0624 dsRNA-activated protei 97.9 0.0053 1.2E-07 45.8 24.2 206 18-230 36-256 (504)
194 PRK15331 chaperone protein Sic 97.8 0.0024 5.1E-08 42.5 12.9 91 26-118 43-133 (165)
195 PF03704 BTAD: Bacterial trans 97.8 0.00017 3.7E-09 47.9 7.8 74 55-129 62-140 (146)
196 PRK10803 tol-pal system protei 97.8 0.0011 2.5E-08 48.4 12.3 98 127-224 145-246 (263)
197 COG4700 Uncharacterized protei 97.7 0.0056 1.2E-07 41.6 18.1 133 87-221 86-219 (251)
198 PF13371 TPR_9: Tetratricopept 97.7 0.00026 5.7E-09 40.7 6.6 56 28-84 3-58 (73)
199 PRK15331 chaperone protein Sic 97.7 0.0036 7.7E-08 41.7 12.4 92 131-224 43-134 (165)
200 PRK10803 tol-pal system protei 97.7 0.0024 5.3E-08 46.7 12.6 95 162-258 145-245 (263)
201 PF12921 ATP13: Mitochondrial 97.6 0.002 4.4E-08 41.3 10.0 78 126-203 3-96 (126)
202 PF13281 DUF4071: Domain of un 97.6 0.018 3.9E-07 44.1 18.8 33 103-135 195-227 (374)
203 PF12921 ATP13: Mitochondrial 97.6 0.0035 7.7E-08 40.2 10.9 87 159-245 1-103 (126)
204 PF03704 BTAD: Bacterial trans 97.6 0.0017 3.6E-08 43.2 9.8 56 130-186 67-122 (146)
205 COG4700 Uncharacterized protei 97.5 0.012 2.5E-07 40.1 17.3 133 51-185 85-218 (251)
206 KOG1130 Predicted G-alpha GTPa 97.5 0.0013 2.7E-08 50.2 9.3 51 28-79 25-79 (639)
207 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.027 5.8E-07 44.1 17.4 67 17-84 72-141 (453)
208 PF13424 TPR_12: Tetratricopep 97.5 0.0004 8.8E-09 40.5 5.5 60 197-256 7-72 (78)
209 PF13281 DUF4071: Domain of un 97.5 0.027 5.7E-07 43.3 18.9 100 19-118 140-254 (374)
210 PF13371 TPR_9: Tetratricopept 97.5 0.0013 2.9E-08 37.7 7.4 51 171-222 6-56 (73)
211 PF13424 TPR_12: Tetratricopep 97.5 0.00043 9.3E-09 40.4 5.3 64 20-83 5-74 (78)
212 KOG1538 Uncharacterized conser 97.5 0.03 6.4E-07 45.6 16.5 191 9-224 624-846 (1081)
213 KOG2041 WD40 repeat protein [G 97.4 0.025 5.3E-07 46.5 15.3 122 17-149 689-820 (1189)
214 COG3898 Uncharacterized membra 97.4 0.036 7.9E-07 42.3 24.3 120 130-257 268-390 (531)
215 KOG0550 Molecular chaperone (D 97.3 0.049 1.1E-06 41.9 15.4 226 26-256 55-313 (486)
216 PF04840 Vps16_C: Vps16, C-ter 97.2 0.054 1.2E-06 41.1 19.2 82 129-220 181-262 (319)
217 PF04840 Vps16_C: Vps16, C-ter 97.2 0.055 1.2E-06 41.0 22.7 83 163-255 180-262 (319)
218 KOG2114 Vacuolar assembly/sort 97.2 0.028 6.1E-07 46.9 14.1 177 24-221 338-516 (933)
219 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.014 3.1E-07 45.5 11.7 63 90-153 75-140 (453)
220 COG1729 Uncharacterized protei 97.2 0.014 2.9E-07 42.3 10.7 96 128-224 145-244 (262)
221 KOG0543 FKBP-type peptidyl-pro 97.2 0.02 4.3E-07 43.8 11.9 124 98-224 216-355 (397)
222 PF10300 DUF3808: Protein of u 97.1 0.1 2.2E-06 42.0 16.8 157 98-257 196-374 (468)
223 PRK11906 transcriptional regul 97.1 0.075 1.6E-06 41.8 14.6 113 70-185 319-432 (458)
224 KOG1130 Predicted G-alpha GTPa 97.1 0.012 2.6E-07 45.1 10.1 254 4-257 36-342 (639)
225 PF10300 DUF3808: Protein of u 97.1 0.12 2.5E-06 41.7 16.7 160 60-222 193-374 (468)
226 KOG2610 Uncharacterized conser 97.0 0.045 9.9E-07 41.0 12.5 154 66-221 114-273 (491)
227 KOG0543 FKBP-type peptidyl-pro 97.0 0.032 6.9E-07 42.7 11.6 62 92-154 259-320 (397)
228 KOG2610 Uncharacterized conser 96.9 0.061 1.3E-06 40.3 12.5 153 102-256 115-273 (491)
229 PRK11906 transcriptional regul 96.9 0.13 2.9E-06 40.4 15.0 114 104-222 318-434 (458)
230 PF04053 Coatomer_WDAD: Coatom 96.9 0.15 3.3E-06 40.6 15.5 159 27-220 268-427 (443)
231 COG3118 Thioredoxin domain-con 96.9 0.1 2.2E-06 38.4 16.6 50 31-81 145-194 (304)
232 PF13428 TPR_14: Tetratricopep 96.9 0.0049 1.1E-07 31.3 4.9 39 22-61 3-41 (44)
233 COG3118 Thioredoxin domain-con 96.9 0.11 2.4E-06 38.2 17.4 152 98-253 142-295 (304)
234 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.19 4E-06 39.5 20.7 146 90-240 397-545 (660)
235 PF13170 DUF4003: Protein of u 96.7 0.15 3.3E-06 38.2 13.9 24 143-166 200-223 (297)
236 PF04053 Coatomer_WDAD: Coatom 96.7 0.21 4.6E-06 39.8 16.5 157 63-255 269-427 (443)
237 COG1729 Uncharacterized protei 96.7 0.062 1.4E-06 39.0 11.0 97 162-259 144-244 (262)
238 PF09205 DUF1955: Domain of un 96.7 0.075 1.6E-06 34.1 12.7 64 196-260 87-150 (161)
239 COG3629 DnrI DNA-binding trans 96.7 0.036 7.8E-07 40.7 9.6 79 55-134 153-236 (280)
240 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.23 4.9E-06 39.0 14.8 131 56-189 398-531 (660)
241 KOG1585 Protein required for f 96.6 0.14 3.1E-06 36.7 15.2 195 20-218 31-250 (308)
242 smart00299 CLH Clathrin heavy 96.6 0.097 2.1E-06 34.4 15.9 84 25-116 12-95 (140)
243 COG3898 Uncharacterized membra 96.5 0.25 5.3E-06 38.1 20.4 79 167-251 270-350 (531)
244 KOG3941 Intermediate in Toll s 96.5 0.028 6.2E-07 41.0 8.2 90 17-106 64-174 (406)
245 KOG4555 TPR repeat-containing 96.5 0.1 2.3E-06 33.4 9.6 90 100-190 53-145 (175)
246 PF13428 TPR_14: Tetratricopep 96.5 0.015 3.4E-07 29.4 5.2 22 131-152 7-28 (44)
247 PF07035 Mic1: Colon cancer-as 96.5 0.14 3E-06 34.6 14.5 32 112-143 16-47 (167)
248 PF08631 SPO22: Meiosis protei 96.4 0.25 5.4E-06 36.9 23.8 223 30-256 3-272 (278)
249 KOG3941 Intermediate in Toll s 96.4 0.046 1E-06 39.9 8.5 91 52-142 64-175 (406)
250 KOG2041 WD40 repeat protein [G 96.4 0.4 8.7E-06 39.9 14.4 183 52-256 689-904 (1189)
251 PF04184 ST7: ST7 protein; In 96.3 0.44 9.5E-06 38.0 16.7 59 165-223 264-323 (539)
252 smart00299 CLH Clathrin heavy 96.2 0.18 4E-06 33.1 15.0 85 59-151 11-95 (140)
253 COG3629 DnrI DNA-binding trans 96.2 0.12 2.7E-06 38.0 10.0 58 129-187 157-214 (280)
254 KOG4555 TPR repeat-containing 96.2 0.17 3.7E-06 32.5 9.8 93 132-225 50-145 (175)
255 COG0457 NrfG FOG: TPR repeat [ 96.1 0.3 6.4E-06 34.7 24.7 167 56-223 60-230 (291)
256 COG4105 ComL DNA uptake lipopr 96.1 0.34 7.4E-06 35.0 19.0 158 66-224 45-233 (254)
257 PF13512 TPR_18: Tetratricopep 96.0 0.23 5E-06 32.5 12.8 86 22-107 12-99 (142)
258 COG0457 NrfG FOG: TPR repeat [ 96.0 0.35 7.6E-06 34.3 27.4 201 20-224 59-265 (291)
259 PF13929 mRNA_stabil: mRNA sta 96.0 0.44 9.4E-06 35.2 12.2 146 23-171 134-289 (292)
260 KOG4570 Uncharacterized conser 95.9 0.12 2.7E-06 38.4 8.9 127 96-224 25-164 (418)
261 KOG2114 Vacuolar assembly/sort 95.9 0.55 1.2E-05 39.9 13.4 179 57-256 336-516 (933)
262 KOG1585 Protein required for f 95.9 0.41 8.9E-06 34.4 16.1 91 162-253 152-250 (308)
263 KOG1538 Uncharacterized conser 95.8 0.86 1.9E-05 37.7 14.2 192 43-257 623-844 (1081)
264 PF04184 ST7: ST7 protein; In 95.8 0.75 1.6E-05 36.8 20.0 56 97-152 266-322 (539)
265 PF10602 RPN7: 26S proteasome 95.8 0.39 8.5E-06 33.1 10.6 23 95-117 41-63 (177)
266 PRK15180 Vi polysaccharide bio 95.7 0.4 8.7E-06 38.1 11.4 112 5-120 310-421 (831)
267 PF13176 TPR_7: Tetratricopept 95.7 0.034 7.3E-07 26.7 3.9 25 198-222 2-26 (36)
268 PF10602 RPN7: 26S proteasome 95.7 0.32 6.9E-06 33.5 10.0 96 126-221 37-139 (177)
269 COG4105 ComL DNA uptake lipopr 95.7 0.53 1.2E-05 34.1 19.4 168 20-189 35-233 (254)
270 PF13176 TPR_7: Tetratricopept 95.5 0.045 9.9E-07 26.2 4.0 23 58-80 2-24 (36)
271 PF02259 FAT: FAT domain; Int 95.5 0.87 1.9E-05 35.2 17.4 54 26-83 4-57 (352)
272 PF13431 TPR_17: Tetratricopep 95.4 0.022 4.7E-07 27.0 2.6 22 53-74 11-32 (34)
273 COG4785 NlpI Lipoprotein NlpI, 95.4 0.62 1.3E-05 33.0 15.7 183 33-226 78-268 (297)
274 PF09613 HrpB1_HrpK: Bacterial 95.3 0.51 1.1E-05 31.6 13.5 51 102-153 22-72 (160)
275 PF13512 TPR_18: Tetratricopep 95.1 0.54 1.2E-05 30.8 11.9 58 133-190 18-77 (142)
276 KOG4570 Uncharacterized conser 95.1 1 2.2E-05 33.8 11.5 128 61-190 25-165 (418)
277 PF13170 DUF4003: Protein of u 95.1 1.1 2.3E-05 33.9 19.9 131 71-203 78-225 (297)
278 PF09205 DUF1955: Domain of un 95.0 0.55 1.2E-05 30.3 15.0 64 127-191 88-151 (161)
279 PF13431 TPR_17: Tetratricopep 95.0 0.039 8.4E-07 26.1 2.7 19 160-178 13-31 (34)
280 KOG1941 Acetylcholine receptor 94.9 1.3 2.8E-05 34.1 12.2 201 22-223 45-274 (518)
281 COG4649 Uncharacterized protei 94.8 0.78 1.7E-05 31.2 12.9 139 54-193 58-200 (221)
282 PF02284 COX5A: Cytochrome c o 94.8 0.52 1.1E-05 28.7 7.5 77 162-239 10-88 (108)
283 PF11207 DUF2989: Protein of u 94.6 0.68 1.5E-05 32.3 8.9 78 171-250 118-198 (203)
284 KOG2280 Vacuolar assembly/sort 94.6 2.4 5.2E-05 35.8 18.2 62 21-82 508-573 (829)
285 cd00923 Cyt_c_Oxidase_Va Cytoc 94.6 0.45 9.7E-06 28.7 6.9 47 141-187 23-69 (103)
286 COG4649 Uncharacterized protei 94.6 0.94 2E-05 30.9 13.2 139 89-228 58-200 (221)
287 COG1747 Uncharacterized N-term 94.5 2.1 4.5E-05 34.6 20.2 180 18-205 64-249 (711)
288 cd00923 Cyt_c_Oxidase_Va Cytoc 94.4 0.46 1E-05 28.6 6.7 64 35-99 22-85 (103)
289 PRK15180 Vi polysaccharide bio 94.4 1.2 2.6E-05 35.6 10.7 118 137-257 301-418 (831)
290 KOG1550 Extracellular protein 94.4 2.5 5.5E-05 35.2 21.6 178 3-190 230-427 (552)
291 PF00515 TPR_1: Tetratricopept 94.4 0.14 3E-06 24.0 3.9 26 198-223 4-29 (34)
292 KOG2280 Vacuolar assembly/sort 94.1 3.2 6.9E-05 35.1 18.8 115 122-255 681-795 (829)
293 PF06552 TOM20_plant: Plant sp 94.0 0.99 2.2E-05 30.9 8.5 45 106-151 7-54 (186)
294 PF00515 TPR_1: Tetratricopept 94.0 0.21 4.6E-06 23.3 4.2 28 22-49 3-30 (34)
295 KOG1586 Protein required for f 94.0 1.6 3.5E-05 31.4 11.2 27 166-192 160-186 (288)
296 KOG1941 Acetylcholine receptor 94.0 2.2 4.9E-05 32.8 16.8 126 61-186 128-272 (518)
297 PF00637 Clathrin: Region in C 93.8 0.035 7.5E-07 36.7 1.5 53 27-79 14-66 (143)
298 PF07719 TPR_2: Tetratricopept 93.8 0.21 4.5E-06 23.2 3.9 25 199-223 5-29 (34)
299 PF11207 DUF2989: Protein of u 93.8 1.1 2.3E-05 31.4 8.4 75 35-110 121-198 (203)
300 PF07719 TPR_2: Tetratricopept 93.7 0.26 5.7E-06 22.8 4.2 28 22-49 3-30 (34)
301 PF13374 TPR_10: Tetratricopep 93.7 0.22 4.7E-06 24.4 4.1 26 21-46 3-28 (42)
302 PF07035 Mic1: Colon cancer-as 93.7 1.5 3.2E-05 29.8 15.2 133 41-188 15-148 (167)
303 PF13374 TPR_10: Tetratricopep 93.7 0.23 5.1E-06 24.3 4.1 28 56-83 3-30 (42)
304 PF06552 TOM20_plant: Plant sp 93.4 1.1 2.4E-05 30.7 7.9 95 2-100 8-123 (186)
305 TIGR03504 FimV_Cterm FimV C-te 93.4 0.17 3.7E-06 25.6 3.2 23 236-258 5-27 (44)
306 PF02284 COX5A: Cytochrome c o 93.2 1.2 2.5E-05 27.3 9.3 63 140-203 25-87 (108)
307 PF07079 DUF1347: Protein of u 93.2 3.6 7.8E-05 32.8 23.0 226 24-257 265-522 (549)
308 PF00637 Clathrin: Region in C 93.2 0.043 9.4E-07 36.2 1.1 119 130-255 12-134 (143)
309 COG1747 Uncharacterized N-term 93.2 3.9 8.5E-05 33.1 20.6 94 54-152 65-158 (711)
310 PF08631 SPO22: Meiosis protei 93.1 2.8 6E-05 31.4 24.0 218 2-222 10-273 (278)
311 KOG1550 Extracellular protein 93.0 4.7 0.0001 33.6 20.6 180 36-225 228-427 (552)
312 COG2976 Uncharacterized protei 92.8 2.3 5E-05 29.6 13.3 133 89-225 53-189 (207)
313 PF07163 Pex26: Pex26 protein; 92.8 2.5 5.4E-05 31.3 9.3 88 61-148 89-181 (309)
314 PF09613 HrpB1_HrpK: Bacterial 92.8 2 4.4E-05 28.9 12.1 54 64-119 19-73 (160)
315 KOG1258 mRNA processing protei 92.4 5.4 0.00012 32.9 20.0 185 54-244 296-489 (577)
316 PF13174 TPR_6: Tetratricopept 92.4 0.28 6.1E-06 22.5 3.1 24 235-258 5-28 (33)
317 COG4785 NlpI Lipoprotein NlpI, 91.9 3.4 7.4E-05 29.5 15.5 164 16-189 94-266 (297)
318 PF07721 TPR_4: Tetratricopept 91.9 0.33 7.2E-06 21.2 2.8 20 235-254 6-25 (26)
319 PF13181 TPR_8: Tetratricopept 91.7 0.61 1.3E-05 21.6 3.9 26 232-257 3-28 (34)
320 COG4455 ImpE Protein of avirul 91.5 3.3 7.1E-05 29.6 8.4 77 57-134 3-81 (273)
321 COG4455 ImpE Protein of avirul 91.4 2.8 6E-05 29.9 8.0 77 22-99 3-81 (273)
322 TIGR03504 FimV_Cterm FimV C-te 91.4 0.65 1.4E-05 23.5 3.8 23 201-223 5-27 (44)
323 COG3947 Response regulator con 91.4 1.7 3.7E-05 32.3 7.2 59 57-116 281-339 (361)
324 TIGR02561 HrpB1_HrpK type III 91.3 3 6.5E-05 27.7 12.0 52 102-154 22-73 (153)
325 KOG4234 TPR repeat-containing 91.3 3.8 8.3E-05 28.8 9.2 88 66-154 106-197 (271)
326 KOG1920 IkappaB kinase complex 91.3 11 0.00024 34.0 18.4 77 167-254 972-1050(1265)
327 PF13929 mRNA_stabil: mRNA sta 91.3 4.9 0.00011 30.0 15.6 136 70-205 143-288 (292)
328 PF13181 TPR_8: Tetratricopept 91.1 0.87 1.9E-05 21.0 4.2 27 197-223 3-29 (34)
329 KOG0276 Vesicle coat complex C 90.6 6.7 0.00015 32.6 10.4 135 21-188 615-749 (794)
330 KOG4077 Cytochrome c oxidase, 90.6 1.4 3.1E-05 28.1 5.5 60 178-238 67-126 (149)
331 PF08424 NRDE-2: NRDE-2, neces 90.4 6.7 0.00015 30.1 15.3 24 167-190 161-184 (321)
332 KOG4234 TPR repeat-containing 90.4 4.8 0.0001 28.4 8.6 88 100-189 105-197 (271)
333 KOG0276 Vesicle coat complex C 90.4 6.1 0.00013 32.8 10.0 152 30-221 596-747 (794)
334 KOG1920 IkappaB kinase complex 90.2 14 0.0003 33.5 17.7 81 131-222 971-1053(1265)
335 TIGR02508 type_III_yscG type I 90.1 2.9 6.3E-05 25.6 7.5 86 35-128 20-105 (115)
336 PF07163 Pex26: Pex26 protein; 90.0 6.4 0.00014 29.3 10.0 89 95-183 88-181 (309)
337 PF14689 SPOB_a: Sensor_kinase 89.6 1.4 3.1E-05 24.2 4.5 24 59-82 27-50 (62)
338 KOG4648 Uncharacterized conser 89.5 5.2 0.00011 30.7 8.6 89 63-154 105-194 (536)
339 PF07079 DUF1347: Protein of u 89.5 9.6 0.00021 30.6 23.7 249 1-256 22-324 (549)
340 PF10579 Rapsyn_N: Rapsyn N-te 89.1 2.2 4.8E-05 24.7 5.0 46 207-252 18-65 (80)
341 PF11846 DUF3366: Domain of un 88.7 3.2 7E-05 29.0 7.0 33 192-224 141-173 (193)
342 PF10345 Cohesin_load: Cohesin 88.3 15 0.00032 31.2 20.2 197 52-258 27-253 (608)
343 TIGR02561 HrpB1_HrpK type III 88.1 5.9 0.00013 26.3 10.9 53 66-120 21-74 (153)
344 KOG4077 Cytochrome c oxidase, 87.7 5.5 0.00012 25.6 6.9 48 142-189 66-113 (149)
345 KOG4648 Uncharacterized conser 87.4 7.2 0.00016 30.0 8.2 90 98-189 105-194 (536)
346 PF04190 DUF410: Protein of un 86.9 11 0.00023 28.0 15.0 28 158-185 88-115 (260)
347 PF14689 SPOB_a: Sensor_kinase 86.7 3.5 7.7E-05 22.7 4.9 42 4-47 9-50 (62)
348 COG0735 Fur Fe2+/Zn2+ uptake r 86.6 5.4 0.00012 26.5 6.6 63 6-69 7-69 (145)
349 COG2909 MalT ATP-dependent tra 86.5 22 0.00047 31.2 20.1 223 30-255 425-684 (894)
350 PF10345 Cohesin_load: Cohesin 86.3 20 0.00043 30.5 18.5 194 19-222 29-252 (608)
351 PF04910 Tcf25: Transcriptiona 85.9 15 0.00033 28.8 18.6 57 167-223 110-167 (360)
352 KOG4507 Uncharacterized conser 85.6 13 0.00029 30.9 9.3 88 101-189 618-705 (886)
353 PHA02875 ankyrin repeat protei 85.3 17 0.00038 29.0 15.6 202 6-229 16-229 (413)
354 smart00028 TPR Tetratricopepti 85.2 2.1 4.5E-05 18.6 3.3 24 198-221 4-27 (34)
355 PF13762 MNE1: Mitochondrial s 85.1 8.9 0.00019 25.5 10.5 81 58-138 42-128 (145)
356 PF10579 Rapsyn_N: Rapsyn N-te 85.0 4.5 9.8E-05 23.5 4.8 47 172-218 18-66 (80)
357 PHA02875 ankyrin repeat protei 84.7 19 0.0004 28.8 12.6 183 28-230 7-196 (413)
358 TIGR02508 type_III_yscG type I 84.4 7.3 0.00016 23.9 7.4 85 2-94 22-106 (115)
359 KOG4507 Uncharacterized conser 84.3 12 0.00025 31.2 8.4 104 63-168 615-718 (886)
360 COG5159 RPN6 26S proteasome re 84.2 15 0.00034 27.5 10.6 27 98-124 11-37 (421)
361 PF11817 Foie-gras_1: Foie gra 83.7 9.4 0.0002 28.0 7.4 61 56-116 179-244 (247)
362 PF09477 Type_III_YscG: Bacter 83.5 8.4 0.00018 24.0 8.8 89 32-128 18-106 (116)
363 cd00280 TRFH Telomeric Repeat 83.5 12 0.00027 25.9 7.3 22 62-83 118-139 (200)
364 COG3947 Response regulator con 83.4 17 0.00037 27.4 15.7 71 162-233 281-356 (361)
365 PF09477 Type_III_YscG: Bacter 83.1 8.8 0.00019 23.9 9.3 86 70-163 21-106 (116)
366 PF08311 Mad3_BUB1_I: Mad3/BUB 83.0 6.9 0.00015 25.3 5.8 62 17-81 63-125 (126)
367 COG2976 Uncharacterized protei 82.9 14 0.0003 26.0 13.8 130 54-190 53-189 (207)
368 PF09454 Vps23_core: Vps23 cor 82.8 5.1 0.00011 22.3 4.4 49 18-67 6-54 (65)
369 KOG0890 Protein kinase of the 82.6 54 0.0012 32.6 13.2 152 60-219 1388-1542(2382)
370 KOG2066 Vacuolar assembly/sort 82.5 32 0.00069 29.8 12.5 151 27-188 363-533 (846)
371 COG5159 RPN6 26S proteasome re 82.4 19 0.00041 27.1 10.4 21 164-184 129-149 (421)
372 KOG1258 mRNA processing protei 81.9 29 0.00062 28.9 19.5 189 18-209 295-489 (577)
373 KOG4567 GTPase-activating prot 81.7 18 0.00039 27.5 7.9 71 40-115 263-343 (370)
374 PF08311 Mad3_BUB1_I: Mad3/BUB 81.6 12 0.00025 24.2 7.1 61 52-115 63-124 (126)
375 PF11846 DUF3366: Domain of un 81.6 15 0.00033 25.7 7.6 33 87-119 141-173 (193)
376 PF11848 DUF3368: Domain of un 81.5 5.6 0.00012 20.5 4.9 33 206-238 13-45 (48)
377 PF08424 NRDE-2: NRDE-2, neces 81.5 22 0.00048 27.4 16.5 96 89-186 18-128 (321)
378 KOG2471 TPR repeat-containing 81.4 28 0.0006 28.5 9.3 109 133-243 248-382 (696)
379 PF04097 Nic96: Nup93/Nic96; 81.2 34 0.00073 29.3 14.1 43 60-103 116-158 (613)
380 COG0735 Fur Fe2+/Zn2+ uptake r 80.9 14 0.0003 24.6 7.2 61 184-245 10-70 (145)
381 KOG1464 COP9 signalosome, subu 80.9 21 0.00045 26.6 17.1 173 15-187 21-218 (440)
382 PRK10564 maltose regulon perip 80.6 4.7 0.0001 30.2 4.8 42 193-234 254-296 (303)
383 PRK09687 putative lyase; Provi 80.5 22 0.00048 26.8 24.4 218 18-258 35-262 (280)
384 PRK09687 putative lyase; Provi 80.5 22 0.00048 26.7 24.4 202 19-241 67-278 (280)
385 PRK10564 maltose regulon perip 80.1 6 0.00013 29.7 5.2 28 24-51 261-288 (303)
386 cd00280 TRFH Telomeric Repeat 79.9 18 0.00038 25.2 7.7 48 141-188 85-139 (200)
387 COG5108 RPO41 Mitochondrial DN 79.8 29 0.00063 29.6 9.2 75 25-102 33-115 (1117)
388 PF11817 Foie-gras_1: Foie gra 79.4 20 0.00044 26.3 7.8 61 197-257 180-245 (247)
389 PF09797 NatB_MDM20: N-acetylt 78.0 32 0.00068 27.1 9.6 123 94-219 184-310 (365)
390 PF13762 MNE1: Mitochondrial s 77.8 18 0.00038 24.1 10.7 85 163-247 42-132 (145)
391 PF11848 DUF3368: Domain of un 77.5 8 0.00017 19.9 4.5 32 31-62 13-44 (48)
392 PF09986 DUF2225: Uncharacteri 77.4 24 0.00052 25.3 9.5 92 134-225 86-195 (214)
393 PF12862 Apc5: Anaphase-promot 77.2 13 0.00029 22.3 6.5 55 170-224 8-70 (94)
394 KOG4567 GTPase-activating prot 76.4 30 0.00065 26.4 7.7 70 180-254 263-342 (370)
395 PF10366 Vps39_1: Vacuolar sor 76.2 16 0.00035 22.8 7.6 28 196-223 40-67 (108)
396 COG0790 FOG: TPR repeat, SEL1 75.7 32 0.00068 25.9 21.3 190 32-234 53-276 (292)
397 KOG4642 Chaperone-dependent E3 75.6 29 0.00063 25.4 10.4 119 29-151 19-143 (284)
398 COG0790 FOG: TPR repeat, SEL1 75.6 32 0.00069 25.9 20.7 145 3-156 59-222 (292)
399 PF00244 14-3-3: 14-3-3 protei 75.2 30 0.00064 25.3 10.8 58 60-117 6-64 (236)
400 smart00777 Mad3_BUB1_I Mad3/BU 74.9 14 0.0003 23.9 5.2 61 16-79 62-123 (125)
401 PF11663 Toxin_YhaV: Toxin wit 74.7 4.2 9.1E-05 26.4 2.8 28 174-203 109-136 (140)
402 KOG0376 Serine-threonine phosp 74.6 18 0.0004 29.2 6.7 105 27-135 11-115 (476)
403 KOG1308 Hsp70-interacting prot 74.4 3.4 7.3E-05 31.6 2.6 95 31-127 125-219 (377)
404 KOG2396 HAT (Half-A-TPR) repea 74.1 48 0.001 27.2 20.5 92 163-257 463-557 (568)
405 PF11663 Toxin_YhaV: Toxin wit 73.9 4 8.6E-05 26.5 2.5 24 74-99 114-137 (140)
406 PF09454 Vps23_core: Vps23 cor 73.8 13 0.00028 20.8 4.2 30 91-120 9-38 (65)
407 PF04190 DUF410: Protein of un 73.2 36 0.00077 25.4 15.9 23 167-189 148-170 (260)
408 KOG1308 Hsp70-interacting prot 72.2 2.7 5.8E-05 32.1 1.7 86 104-191 128-213 (377)
409 KOG4642 Chaperone-dependent E3 71.6 37 0.00081 24.9 11.1 120 64-186 19-143 (284)
410 PF07575 Nucleopor_Nup85: Nup8 71.4 19 0.00042 30.3 6.7 32 207-238 507-538 (566)
411 PF12926 MOZART2: Mitotic-spin 71.2 19 0.00042 21.4 7.8 43 41-83 29-71 (88)
412 COG5108 RPO41 Mitochondrial DN 70.8 68 0.0015 27.6 9.2 75 95-172 33-115 (1117)
413 PRK11619 lytic murein transgly 70.5 70 0.0015 27.6 21.2 116 139-257 255-373 (644)
414 PF12862 Apc5: Anaphase-promot 70.1 21 0.00046 21.5 6.6 53 31-83 9-69 (94)
415 PRK10941 hypothetical protein; 70.0 44 0.00095 25.1 10.3 77 163-240 184-261 (269)
416 KOG0890 Protein kinase of the 69.4 1.3E+02 0.0028 30.3 18.6 62 195-259 1670-1731(2382)
417 PF02259 FAT: FAT domain; Int 68.7 52 0.0011 25.4 21.0 65 124-188 145-212 (352)
418 KOG0686 COP9 signalosome, subu 68.6 59 0.0013 26.0 14.7 64 21-84 151-216 (466)
419 KOG0376 Serine-threonine phosp 68.6 23 0.0005 28.6 6.0 104 62-170 11-115 (476)
420 PF12926 MOZART2: Mitotic-spin 68.5 22 0.00049 21.1 7.5 43 181-223 29-71 (88)
421 cd07153 Fur_like Ferric uptake 68.2 22 0.00048 22.3 5.2 47 166-212 6-52 (116)
422 cd08819 CARD_MDA5_2 Caspase ac 68.0 23 0.00051 21.1 6.7 36 207-247 48-83 (88)
423 PF07575 Nucleopor_Nup85: Nup8 67.9 75 0.0016 26.9 10.6 62 159-222 404-465 (566)
424 PRK11639 zinc uptake transcrip 67.6 37 0.0008 23.3 6.9 37 68-104 38-74 (169)
425 KOG2908 26S proteasome regulat 66.8 59 0.0013 25.3 9.1 59 95-153 80-143 (380)
426 PF09670 Cas_Cas02710: CRISPR- 66.7 64 0.0014 25.7 10.4 55 64-119 140-198 (379)
427 PF05944 Phage_term_smal: Phag 66.6 33 0.00072 22.4 7.5 32 56-87 49-80 (132)
428 KOG3807 Predicted membrane pro 66.1 60 0.0013 25.2 8.9 60 60-119 280-340 (556)
429 PF01475 FUR: Ferric uptake re 66.1 19 0.00042 22.8 4.6 46 200-245 12-57 (120)
430 smart00386 HAT HAT (Half-A-TPR 66.1 11 0.00024 16.6 4.0 15 35-49 2-16 (33)
431 KOG2063 Vacuolar assembly/sort 66.0 1E+02 0.0022 27.7 20.3 187 22-208 506-745 (877)
432 PF10255 Paf67: RNA polymerase 65.8 62 0.0014 25.9 7.9 100 88-187 70-191 (404)
433 KOG3677 RNA polymerase I-assoc 65.0 71 0.0015 25.6 10.9 60 58-117 238-299 (525)
434 cd08819 CARD_MDA5_2 Caspase ac 65.0 27 0.00059 20.8 7.3 64 40-109 22-85 (88)
435 KOG2297 Predicted translation 64.7 62 0.0013 24.8 13.7 13 18-30 109-121 (412)
436 PRK09462 fur ferric uptake reg 64.6 39 0.00085 22.5 6.8 61 9-70 6-67 (148)
437 COG2256 MGS1 ATPase related to 63.9 75 0.0016 25.5 13.7 122 19-157 191-321 (436)
438 PRK14700 recombination factor 63.5 65 0.0014 24.6 12.8 145 16-174 63-215 (300)
439 PF02847 MA3: MA3 domain; Int 62.9 33 0.00072 21.3 5.2 18 63-80 10-27 (113)
440 KOG1839 Uncharacterized protei 62.6 1.4E+02 0.003 28.0 11.9 153 101-253 943-1122(1236)
441 KOG1464 COP9 signalosome, subu 62.4 65 0.0014 24.2 18.5 181 2-182 44-253 (440)
442 PF10366 Vps39_1: Vacuolar sor 61.4 38 0.00081 21.2 6.8 26 128-153 42-67 (108)
443 KOG2422 Uncharacterized conser 60.7 1E+02 0.0022 26.0 16.3 143 103-245 251-431 (665)
444 PRK09857 putative transposase; 60.7 73 0.0016 24.3 8.7 66 163-229 209-274 (292)
445 PRK11639 zinc uptake transcrip 60.7 52 0.0011 22.6 7.3 61 151-212 17-77 (169)
446 PF14561 TPR_20: Tetratricopep 60.2 35 0.00076 20.5 8.3 33 52-84 19-51 (90)
447 PRK13342 recombination factor 60.1 90 0.002 25.2 18.4 32 103-134 243-274 (413)
448 COG2909 MalT ATP-dependent tra 59.9 1.3E+02 0.0028 26.9 21.5 194 65-258 425-646 (894)
449 KOG0686 COP9 signalosome, subu 59.4 92 0.002 25.0 14.0 95 55-151 150-255 (466)
450 KOG2063 Vacuolar assembly/sort 59.3 1.4E+02 0.003 27.0 16.0 187 57-243 506-745 (877)
451 KOG2659 LisH motif-containing 59.3 66 0.0014 23.3 8.7 65 17-83 23-92 (228)
452 PF09670 Cas_Cas02710: CRISPR- 59.2 90 0.002 24.9 11.4 53 135-188 141-197 (379)
453 PF14853 Fis1_TPR_C: Fis1 C-te 58.5 27 0.00058 18.5 5.7 22 202-223 8-29 (53)
454 PRK09462 fur ferric uptake reg 58.5 52 0.0011 21.9 7.3 37 175-211 32-68 (148)
455 PF11123 DNA_Packaging_2: DNA 58.3 33 0.00072 19.6 4.6 33 35-68 12-44 (82)
456 KOG2066 Vacuolar assembly/sort 57.4 1.4E+02 0.003 26.4 13.4 153 61-223 362-533 (846)
457 PRK12798 chemotaxis protein; R 57.3 1E+02 0.0022 24.8 19.4 154 68-224 125-286 (421)
458 PRK10941 hypothetical protein; 57.2 81 0.0018 23.7 10.5 61 128-189 184-244 (269)
459 cd07153 Fur_like Ferric uptake 56.5 42 0.00092 21.0 4.9 49 130-178 5-53 (116)
460 KOG1839 Uncharacterized protei 56.4 1.8E+02 0.0038 27.4 10.5 156 64-219 941-1123(1236)
461 KOG3636 Uncharacterized conser 55.5 1.1E+02 0.0024 24.8 8.4 95 6-101 169-271 (669)
462 PF10475 DUF2450: Protein of u 54.9 92 0.002 23.7 9.7 114 131-255 104-222 (291)
463 KOG2297 Predicted translation 54.5 98 0.0021 23.8 13.6 20 195-214 321-340 (412)
464 PF11768 DUF3312: Protein of u 54.5 1.3E+02 0.0028 25.2 11.3 61 128-188 411-472 (545)
465 PF02847 MA3: MA3 domain; Int 53.8 52 0.0011 20.5 5.8 60 129-190 6-67 (113)
466 PF02607 B12-binding_2: B12 bi 53.1 32 0.00069 19.7 3.6 25 208-232 14-38 (79)
467 PF02184 HAT: HAT (Half-A-TPR) 52.9 24 0.00053 16.4 3.4 22 211-234 3-24 (32)
468 smart00777 Mad3_BUB1_I Mad3/BU 52.5 62 0.0013 21.0 8.2 74 37-115 50-124 (125)
469 PF01475 FUR: Ferric uptake re 51.9 39 0.00084 21.4 4.2 31 132-162 14-44 (120)
470 PF09868 DUF2095: Uncharacteri 51.3 61 0.0013 20.5 5.2 23 63-85 69-91 (128)
471 KOG0687 26S proteasome regulat 51.3 1.1E+02 0.0025 23.7 13.8 116 35-152 83-208 (393)
472 KOG4279 Serine/threonine prote 50.9 1.8E+02 0.0039 25.8 12.2 111 5-118 183-315 (1226)
473 COG5187 RPN7 26S proteasome re 50.8 1.1E+02 0.0024 23.4 13.8 98 53-152 113-219 (412)
474 PF04090 RNA_pol_I_TF: RNA pol 50.6 89 0.0019 22.2 7.3 28 22-49 43-70 (199)
475 PRK13341 recombination factor 49.4 1.9E+02 0.0041 25.6 16.2 30 16-47 193-222 (725)
476 PRK09857 putative transposase; 49.2 1.2E+02 0.0025 23.2 8.8 62 198-260 209-270 (292)
477 PRK12798 chemotaxis protein; R 49.0 1.4E+02 0.0031 24.1 21.0 217 7-232 99-332 (421)
478 KOG4814 Uncharacterized conser 48.4 1.2E+02 0.0026 26.1 7.1 61 22-83 396-456 (872)
479 PF04090 RNA_pol_I_TF: RNA pol 47.3 1E+02 0.0022 21.9 7.4 34 126-160 42-75 (199)
480 cd00245 Glm_e Coenzyme B12-dep 47.1 38 0.00083 27.3 4.1 150 2-159 28-201 (428)
481 cd08790 DED_DEDD Death Effecto 46.6 47 0.001 20.3 3.5 59 31-91 35-93 (97)
482 PF11838 ERAP1_C: ERAP1-like C 46.1 1.3E+02 0.0029 22.9 20.2 109 106-219 146-261 (324)
483 PF15297 CKAP2_C: Cytoskeleton 45.9 1.5E+02 0.0032 23.3 9.9 63 177-241 120-186 (353)
484 COG5191 Uncharacterized conser 45.8 1E+02 0.0022 23.8 5.8 82 16-99 103-185 (435)
485 PF14561 TPR_20: Tetratricopep 45.5 66 0.0014 19.3 8.9 63 8-71 11-74 (90)
486 KOG2471 TPR repeat-containing 44.8 1.8E+02 0.004 24.2 10.4 108 63-171 248-380 (696)
487 COG4259 Uncharacterized protei 44.8 75 0.0016 19.7 6.6 20 130-149 77-96 (121)
488 PF14669 Asp_Glu_race_2: Putat 44.5 1.1E+02 0.0025 21.7 13.7 57 164-220 136-206 (233)
489 PF13934 ELYS: Nuclear pore co 44.4 1.2E+02 0.0026 22.0 15.5 106 93-209 79-186 (226)
490 KOG0292 Vesicle coat complex C 44.3 51 0.0011 29.3 4.6 81 159-254 671-751 (1202)
491 PRK07003 DNA polymerase III su 44.2 2.4E+02 0.0052 25.3 11.4 28 93-121 249-276 (830)
492 KOG1586 Protein required for f 44.1 1.3E+02 0.0028 22.3 19.8 133 57-190 76-225 (288)
493 PF03745 DUF309: Domain of unk 43.8 56 0.0012 18.0 6.3 14 138-151 12-25 (62)
494 PF04910 Tcf25: Transcriptiona 43.6 1.6E+02 0.0036 23.3 18.7 102 52-153 37-167 (360)
495 PF05944 Phage_term_smal: Phag 43.6 93 0.002 20.4 8.7 31 92-122 50-80 (132)
496 KOG3677 RNA polymerase I-assoc 43.5 1.3E+02 0.0027 24.4 6.2 57 95-152 240-299 (525)
497 PF02840 Prp18: Prp18 domain; 43.3 96 0.0021 20.7 4.9 44 39-82 43-86 (144)
498 PF01335 DED: Death effector d 43.2 68 0.0015 18.8 4.3 57 22-79 19-78 (84)
499 PF04097 Nic96: Nup93/Nic96; 43.1 2.2E+02 0.0048 24.6 15.5 46 21-68 113-158 (613)
500 KOG0687 26S proteasome regulat 42.6 1.6E+02 0.0035 23.0 11.5 134 120-257 65-208 (393)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-49 Score=328.91 Aligned_cols=256 Identities=21% Similarity=0.365 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444443
Q ss_pred h--cCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH
Q 044047 83 S--KGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGI 160 (260)
Q Consensus 83 ~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (260)
. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.++.+|++.|++++|.++|++|...|+.||.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 3 23444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044047 161 EAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGC 240 (260)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 240 (260)
.+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HhcCchhHHHHHHHHHhh
Q 044047 241 IRNNETSKVVELLHRMDE 258 (260)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~ 258 (260)
++.|++++|.++|++|.+
T Consensus 730 ~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-49 Score=326.62 Aligned_cols=260 Identities=22% Similarity=0.410 Sum_probs=254.5
Q ss_pred ChhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhh--cCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 044047 1 MDEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDI--NGCMHNVVTYNTLINGYCKTKDVEESLNLY 78 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 78 (260)
+++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 368999999999999999999999999999999999999999999976 678999999999999999999999999999
Q ss_pred HHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc
Q 044047 79 SEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL 158 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (260)
++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.++.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 044047 159 GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLML 238 (260)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 238 (260)
+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCchhHHHHHHHHHhhcC
Q 044047 239 GCIRNNETSKVVELLHRMDERN 260 (260)
Q Consensus 239 ~~~~~~~~~~a~~~~~~m~~~~ 260 (260)
+|.+.|++++|.+++++|.+.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999998875
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.2e-44 Score=291.62 Aligned_cols=230 Identities=22% Similarity=0.382 Sum_probs=149.3
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
|..+|+.|+.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33344555556666666666666666654 34566666666666666666666666666666666666666666666
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (260)
+|++.|++++|.+++..|.+.|++|+..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHH
Confidence 666666666666666666666666666666666666666666666666666664 3456666666666666666666
Q ss_pred HHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 179 AWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA-KGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.+++++|
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 666666666666666666666666666666666666666666654 366666666666666666666666666666654
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-43 Score=291.34 Aligned_cols=250 Identities=26% Similarity=0.394 Sum_probs=217.5
Q ss_pred ChhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 044047 1 MDEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSE 80 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 80 (260)
+++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++
T Consensus 205 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 36788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH
Q 044047 81 MLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGI 160 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (260)
|.+ +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.+++|+.
T Consensus 285 m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 285 MPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred CCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 853 4788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044047 161 EAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGC 240 (260)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 240 (260)
.+|+.++.+|++.|++++|.++|+.|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 8888888888888888888888888864 688888888888888888888888888888888888888888888888
Q ss_pred HhcCchhHHHHHHHHHhh
Q 044047 241 IRNNETSKVVELLHRMDE 258 (260)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~ 258 (260)
.+.|+.++|.++|+.|.+
T Consensus 437 ~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred hcCCcHHHHHHHHHHHHH
Confidence 888888888888888865
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-42 Score=287.54 Aligned_cols=250 Identities=22% Similarity=0.348 Sum_probs=181.4
Q ss_pred hhHHHHHHHHHHcCCCccHHHH-----------------------------------HHHHHHHhccCCHHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVY-----------------------------------STLIDGFCLTGEIDRARELFVSM 46 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~~~~~~~~~a~~~~~~~ 46 (260)
++|+++|++|...|+.||..+| +.++.+|++.|++++|.++|+.|
T Consensus 169 ~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m 248 (857)
T PLN03077 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC
Confidence 5677777777777766666665 45555556666666666666666
Q ss_pred hhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchh
Q 044047 47 DINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETS 126 (260)
Q Consensus 47 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 126 (260)
. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|+.||..
T Consensus 249 ~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 249 P----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred C----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 4 345666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHH
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFC 206 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (260)
+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 77777777777777777777777765 45666777777777777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 207 NDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 207 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
+.|++++|.+++..|.+.|+.|+..+++.|+.+|.+.|++++|.++|++|.++
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 77777777777777777777777777777777788888888888877777654
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.9e-42 Score=286.52 Aligned_cols=248 Identities=21% Similarity=0.326 Sum_probs=196.1
Q ss_pred ChhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHH-----------------
Q 044047 1 MDEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLIN----------------- 63 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------------- 63 (260)
++.|.++|++|. +||..+|+.++.+|++.|++++|.++|++|...|+.||..||+.++.
T Consensus 137 ~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 137 LVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 357889999986 46899999999999999999999999999998888888777755554
Q ss_pred ------------------HHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcch
Q 044047 64 ------------------GYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAET 125 (260)
Q Consensus 64 ------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 125 (260)
+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+.+|++|...|+.||.
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 4555556666666666554 246666677777777777777777777777777777777
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHH
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGF 205 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (260)
.+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. ||..+|+.++.+|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~ 364 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGY 364 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHH
Confidence 777777777777777777777777777777778888888888888888888888888887763 5777888888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 044047 206 CNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDERN 260 (260)
Q Consensus 206 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 260 (260)
++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 8888888888888888888888888888888888888888888888888887654
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.4e-22 Score=157.06 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=168.9
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCc---hhhHHHHHHHHHhcCChHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHN---VVTYNTLINGYCKTKDVEESLNLY 78 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 78 (260)
++|.+.|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|++++|..+|
T Consensus 52 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 130 (389)
T PRK11788 52 DKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELF 130 (389)
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56777777777764 34566777777778888888888888877766431111 245667777777778888888888
Q ss_pred HHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcc----hhhHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 044047 79 SEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAE----TSTYNTFIDGLCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (260)
+++.+.. +++..++..++..+...|++++|...++.+.+.+..+. ...+..+...+...|++++|...++++.+.
T Consensus 131 ~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 131 LQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 7777652 23556677777777777777777777777766542221 123445566667777777777777777655
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH
Q 044047 155 KCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFN 234 (260)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 234 (260)
. +.+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+. .|+...+.
T Consensus 210 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~ 286 (389)
T PRK11788 210 D-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLL 286 (389)
T ss_pred C-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHH
Confidence 3 34455666677777777777777777777766432222345666777777777777777777777664 45555566
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhh
Q 044047 235 TLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 235 ~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
.++..+.+.|++++|..+++++.+
T Consensus 287 ~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 287 ALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677777777777777777776654
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.2e-22 Score=155.89 Aligned_cols=252 Identities=16% Similarity=0.153 Sum_probs=210.7
Q ss_pred hhHHHHHHHHHHcCCCc---cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRP---NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLY 78 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 78 (260)
++|..+++.+...+..+ ....+..++..+.+.|++++|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.+
T Consensus 86 ~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (389)
T PRK11788 86 DRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVA 164 (389)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHH
Confidence 57888999888754222 23568889999999999999999999998764 567889999999999999999999999
Q ss_pred HHHHhcCCCCCc----cchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 044047 79 SEMLSKGIRPTV----VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 79 ~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (260)
+.+.+.+..+.. ..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 165 ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999886544322 234567778889999999999999998765 455678888999999999999999999999876
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH
Q 044047 155 KCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFN 234 (260)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 234 (260)
+......+++.++.+|...|++++|...++.+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~ 319 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH 319 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence 433335678889999999999999999999998864 66667788999999999999999999999885 68888998
Q ss_pred HHHHHHHh---cCchhHHHHHHHHHhhc
Q 044047 235 TLMLGCIR---NNETSKVVELLHRMDER 259 (260)
Q Consensus 235 ~l~~~~~~---~~~~~~a~~~~~~m~~~ 259 (260)
.++..+.. .|+.+++..++++|.++
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 88877765 55899999999998764
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=1.4e-20 Score=160.30 Aligned_cols=247 Identities=12% Similarity=0.087 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
+|...++.+.+.. +.+..++..++..+...|++++|..+++.+...+ +.+...+..+...+...|++++|...++++.
T Consensus 653 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 653 KAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444432 2234445555555555555555555555554443 3445555555566666666666666666665
Q ss_pred hcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH
Q 044047 83 SKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEA 162 (260)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (260)
..+ |+..++..+..++.+.|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.... +.++..
T Consensus 731 ~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 806 (899)
T TIGR02917 731 KRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVV 806 (899)
T ss_pred hhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 543 333555556666666666666666666666554 5566666677777777777777777777776654 556667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIR 242 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 242 (260)
++.+...+...|+ .+|..+++++..... -+..++..+...+...|++++|..+++++.+.+. .+..++..+..++.+
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHH
Confidence 7777777777777 667777777766432 2455667777888888999999999999888753 378888888999999
Q ss_pred cCchhHHHHHHHHHhh
Q 044047 243 NNETSKVVELLHRMDE 258 (260)
Q Consensus 243 ~~~~~~a~~~~~~m~~ 258 (260)
.|++++|.+++++|++
T Consensus 884 ~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 884 TGRKAEARKELDKLLN 899 (899)
T ss_pred cCCHHHHHHHHHHHhC
Confidence 9999999999988864
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=3.2e-20 Score=158.06 Aligned_cols=247 Identities=9% Similarity=0.042 Sum_probs=129.4
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 4 ASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 4 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
|...++++.+.+ +.+...+..++..+...|++++|..+++.+.+.. +.+..+|..+..++...|++++|...++++.+
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444443332 2233344444444455555555555555444332 33445555555555555555555555555544
Q ss_pred cCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHH
Q 044047 84 KGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAY 163 (260)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (260)
... .+...+..+...+...|++++|..+++++.+.. +.+..++..++..+...|++++|.++++.+.... +.+...+
T Consensus 630 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 706 (899)
T TIGR02917 630 LQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGF 706 (899)
T ss_pred hCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHH
Confidence 322 133444455555555555555555555554443 3344455555555555555555555555554443 3444555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 044047 164 SCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRN 243 (260)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 243 (260)
..+...+...|++++|...++.+...+ |+..++..++.++...|++++|.+.++++.+. .+.+...+..+...|...
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHC
Confidence 555556666666666666666655543 33345555555666666666666666665554 234555556666666666
Q ss_pred CchhHHHHHHHHHhh
Q 044047 244 NETSKVVELLHRMDE 258 (260)
Q Consensus 244 ~~~~~a~~~~~~m~~ 258 (260)
|++++|.+.|+++.+
T Consensus 784 g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 784 KDYDKAIKHYRTVVK 798 (899)
T ss_pred cCHHHHHHHHHHHHH
Confidence 666666666666554
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.3e-18 Score=140.44 Aligned_cols=252 Identities=14% Similarity=0.059 Sum_probs=207.5
Q ss_pred hhHHHHHHHHHHcC--CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 2 DEASRLLDLMIQRG--VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYS 79 (260)
Q Consensus 2 ~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 79 (260)
++|.+.|+...+.+ .+.....|+.+...+...|++++|+..++...... |.....|..+...+...|++++|+..++
T Consensus 311 ~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 311 EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 57888888888764 23356778888999999999999999999998775 4557789999999999999999999999
Q ss_pred HHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC
Q 044047 80 EMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELG 159 (260)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (260)
+..+.... +..++..+...+...|++++|...|++..+.. |.+...+..+..++.+.|++++|+..++...... +.+
T Consensus 390 ~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~ 466 (615)
T TIGR00990 390 KALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEA 466 (615)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 99887433 67888999999999999999999999998876 5667788889999999999999999999988764 567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchh------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 044047 160 IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVV------TYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTF 233 (260)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 233 (260)
+..++.+...+...|++++|...|+.........+.. .++.....+...|++++|..++++..... +.+...+
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~ 545 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAV 545 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHH
Confidence 8899999999999999999999999988754221111 12222233445799999999999988763 3345578
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 234 NTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
..+...+...|++++|+++|++..+
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8899999999999999999998754
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.8e-18 Score=139.15 Aligned_cols=250 Identities=10% Similarity=0.031 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|++.++.+.+.. |.++..+..+...+.+.|++++|...++++.+.. |.+...+..+...+...|++++|...++++
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 34555666655553 3345555555666666666666666666655543 344555555555555566666665555555
Q ss_pred HhcCCC---------------------------------CCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhH
Q 044047 82 LSKGIR---------------------------------PTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTY 128 (260)
Q Consensus 82 ~~~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 128 (260)
...... ++......+...+...|++++|+..+++..... +.+...+
T Consensus 171 ~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 171 AQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 433221 111222222333444444444444444444433 3334444
Q ss_pred HHHHHHHHhcCcHHH----HHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHH
Q 044047 129 NTFIDGLCKNGYIVE----AAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHG 204 (260)
Q Consensus 129 ~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (260)
..+...+...|++++ |...++...... +.+...+..+...+...|++++|...+++...... .+...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 445555555555553 455555555443 33445555555555566666666666655555431 123444555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 205 FCNDGQMDKAHDLFLDMEAKGVAPNC-VTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 205 ~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+...|++++|...++++... .|+. ..+..+..++...|++++|...|++..+
T Consensus 328 l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666655553 2332 2222334455566666666666665543
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=6.7e-18 Score=137.70 Aligned_cols=216 Identities=13% Similarity=0.102 Sum_probs=163.2
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|...++.+..... .++..+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|+..+++.
T Consensus 161 ~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 161 LQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345555655554432 222233222 235566777777777666655432233344455567788889999999999998
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHH----HHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEH----ALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE 157 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (260)
.+.... +...+..+...+...|++++ |...|++..... |.+...+..+...+...|++++|...+++..... +
T Consensus 239 l~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P 315 (656)
T PRK15174 239 LARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-P 315 (656)
T ss_pred HhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 876533 57778889999999999986 899999998875 6678899999999999999999999999998875 5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCch-hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 158 LGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNV-VTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
.+...+..+..++.+.|++++|...++.+...+ |+. ..+..+..++...|++++|...|++..+.
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 567788889999999999999999999998764 443 33444577889999999999999999875
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=6.8e-17 Score=131.88 Aligned_cols=251 Identities=14% Similarity=0.028 Sum_probs=169.8
Q ss_pred ChhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 044047 1 MDEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSE 80 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 80 (260)
+++|+..|++..+. .|++..|..+..+|.+.|++++|++.++...+.+ |.+...|..+..++...|++++|+..+..
T Consensus 143 ~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 143 FNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35788888888765 4677788888999999999999999999888775 55677888888888888888877654432
Q ss_pred HH------------------------------------------------------------------------------
Q 044047 81 ML------------------------------------------------------------------------------ 82 (260)
Q Consensus 81 ~~------------------------------------------------------------------------------ 82 (260)
..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 21
Q ss_pred ----------------------hcC-CCC-CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc
Q 044047 83 ----------------------SKG-IRP-TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN 138 (260)
Q Consensus 83 ----------------------~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 138 (260)
+.+ ..| ....+..+...+...|++++|+..+++..+.. |.....|..+...+...
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLEL 378 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHC
Confidence 110 001 11223334444455666666666666666543 33455666666667777
Q ss_pred CcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 044047 139 GYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLF 218 (260)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 218 (260)
|++++|...++...... +.++..+..+...+...|++++|...|++...... .+...+..+...+.+.|++++|...+
T Consensus 379 g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777766554 44566777777777777777777777777776532 24556666777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 219 LDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 219 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
++.... .+.+...+..+..++...|++++|+..|++..+
T Consensus 457 ~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 457 RRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 777764 233466777777777778888888777777553
No 15
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.83 E-value=1.5e-19 Score=133.61 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=114.5
Q ss_pred ChhHHHHHHHHHHcC-CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 1 MDEASRLLDLMIQRG-VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYS 79 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 79 (260)
+++|+++++...... .+.++..|..+.......++++.|...++++...+ +.++..+..++.. ...+++++|.++++
T Consensus 24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~ 101 (280)
T PF13429_consen 24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAE 101 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccccccccccc
Confidence 356788886554443 34466777777778888999999999999998776 4467778888877 78999999999998
Q ss_pred HHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcC-CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc
Q 044047 80 EMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSD-VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL 158 (260)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (260)
+..+.. +++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+++..... |.
T Consensus 102 ~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~ 178 (280)
T PF13429_consen 102 KAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PD 178 (280)
T ss_dssp ------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT
T ss_pred cccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 876653 466777888889999999999999999976532 34577788889999999999999999999999875 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 044047 159 GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLML 238 (260)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 238 (260)
++.....++..+...|+.+++.+++....... +.|+..+..+..++...|+.++|...|++..+. .+.|+.....+..
T Consensus 179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 179 DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYAD 256 (280)
T ss_dssp -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-ccccccccccccc
Confidence 78889999999999999999999998887764 346677889999999999999999999999885 2457888889999
Q ss_pred HHHhcCchhHHHHHHHHHhh
Q 044047 239 GCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 239 ~~~~~~~~~~a~~~~~~m~~ 258 (260)
++...|+.++|.++.++..+
T Consensus 257 ~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 257 ALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHT-----------------
T ss_pred cccccccccccccccccccc
Confidence 99999999999999887643
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=4.1e-17 Score=125.31 Aligned_cols=247 Identities=14% Similarity=0.091 Sum_probs=182.7
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
+|++.|++..... |.=...|-.|...|...+.+++|...|....... |.....+..+...|..+|..+.|+..|++..
T Consensus 236 ~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 236 LAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 4566666666653 2235667778888888888888888887776553 4456677777777888888888888888887
Q ss_pred hcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH
Q 044047 83 SKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEA 162 (260)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (260)
+..+. -...|+.|..++...|++.+|...|.+..... +......+.|...|...|.+++|.++|....+.. +.-...
T Consensus 314 ~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa 390 (966)
T KOG4626|consen 314 ELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAA 390 (966)
T ss_pred hcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhh
Confidence 75322 36778888888888888888888888877764 4556677788888888888888888888776543 333456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN-CVTFNTLMLGC 240 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 240 (260)
++.+...|-+.|++++|...+++..+ +.|+ ..+|+.+...|-..|+.+.|.+.+.+.... .|. ...++.|...|
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIY 466 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHh
Confidence 78888888888888888888888776 3455 467888888888888888888888887764 444 56677788888
Q ss_pred HhcCchhHHHHHHHHHhh
Q 044047 241 IRNNETSKVVELLHRMDE 258 (260)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~ 258 (260)
...|+..+|++-+++...
T Consensus 467 kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hccCCcHHHHHHHHHHHc
Confidence 888888888888776543
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=2.7e-15 Score=130.21 Aligned_cols=251 Identities=14% Similarity=0.037 Sum_probs=152.7
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHH--------------------
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTL-------------------- 61 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------------- 61 (260)
++|++.|++..+.. +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..+
T Consensus 368 ~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 368 AQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 56888888888875 4467778888999999999999999999988764 3334333322
Q ss_pred ----------------------HHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhc
Q 044047 62 ----------------------INGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS 119 (260)
Q Consensus 62 ----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (260)
...+...|++++|++.+++..+..+. +...+..+...|.+.|++++|...++++.+.
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 23344568888888888888876433 4566777888888888888888888887664
Q ss_pred CCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc---------------------------------------CCCcCH
Q 044047 120 DVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL---------------------------------------KCELGI 160 (260)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~ 160 (260)
. +.+...+..+...+...++.++|...++.+... ..+.++
T Consensus 525 ~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~ 603 (1157)
T PRK11447 525 K-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST 603 (1157)
T ss_pred C-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc
Confidence 3 333333332222333333333333333222100 013334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044047 161 EAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGC 240 (260)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 240 (260)
..+..+...+.+.|++++|...++.+.+... .+...+..++..+...|++++|...++...+.. +.+...+..+..++
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~ 681 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAW 681 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHH
Confidence 4455556666666666666666666665432 245556666666666666666666666555431 22334444555566
Q ss_pred HhcCchhHHHHHHHHHhh
Q 044047 241 IRNNETSKVVELLHRMDE 258 (260)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~ 258 (260)
...|++++|.++++++..
T Consensus 682 ~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 666666666666666543
No 18
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.77 E-value=3e-15 Score=115.64 Aligned_cols=217 Identities=9% Similarity=-0.011 Sum_probs=142.6
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCchhhHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHH
Q 044047 31 CLTGEIDRARELFVSMDINGCMHNVVTYN--TLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEH 108 (260)
Q Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 108 (260)
.+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++++.+..+. ++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555433 22322111 2234444455555555555555444322 34444445555555555555
Q ss_pred HHHHHHHHhhcC-----------------------------------------CCcchhhHHHHHHHHHhcCcHHHHHHH
Q 044047 109 ALKLFDEMQHSD-----------------------------------------VAAETSTYNTFIDGLCKNGYIVEAAEL 147 (260)
Q Consensus 109 a~~~~~~~~~~~-----------------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 147 (260)
|..++..+.+.+ .+.++.....+...+...|+.++|.++
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 554444443322 233555666778888889999999999
Q ss_pred HHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 044047 148 FRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVA 227 (260)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 227 (260)
+++..+. ++++... ++.+....++.+++.+..+...+... -|...+..+.+.+.+.+++++|.+.|+...+. .
T Consensus 286 L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~ 358 (398)
T PRK10747 286 ILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--R 358 (398)
T ss_pred HHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 9888773 5565322 23344456899999999988887642 35667888999999999999999999999984 7
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 228 PNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 228 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
|+..++..+..++.+.|+.++|.+++++-.
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999998753
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=3.8e-16 Score=120.10 Aligned_cols=248 Identities=18% Similarity=0.156 Sum_probs=190.9
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
+|..-|.+..+.. +-=+..|..|...+-.+|+...|+..|++..+.+ |.-...|-.|...|...+.++.|+..|.+..
T Consensus 202 ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 202 EAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred hhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 3444444444432 1123456666777777788888888888777664 4445677888888888888888888887776
Q ss_pred hcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH
Q 044047 83 SKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEA 162 (260)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (260)
..... ...++..+...|...|..+.|+..|++..+.. |.-...|+.+..++...|++.+|...+.+..... +-....
T Consensus 280 ~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 280 NLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred hcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 64222 46677777777888899999999999888764 4446789999999999999999999999888764 556778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN-CVTFNTLMLGC 240 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 240 (260)
.+.+...|...|.++.|..+|....+. .|. ...++.|...|-++|++++|+..+++.+. +.|+ ...|+.+...|
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHH
Confidence 888999999999999999999888774 344 56788999999999999999999999887 4666 57788899999
Q ss_pred HhcCchhHHHHHHHHHhhc
Q 044047 241 IRNNETSKVVELLHRMDER 259 (260)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~~ 259 (260)
...|+.+.|.+.+.+.+.-
T Consensus 433 ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHhhhHHHHHHHHHHHHhc
Confidence 9999999999998887653
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1e-14 Score=122.51 Aligned_cols=230 Identities=7% Similarity=-0.026 Sum_probs=182.5
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
++..|..+..++.. ++.++|...+....... |+......+...+...|++++|...++++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 67788888888876 78888999888877663 55544444555567899999999999987654 344555667777
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (260)
++.+.|+.++|...+++..+.+ +.....+..+.......|++++|...+++..... |+...+..+..++.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8889999999999999988765 4444444444445556699999999999988764 568889999999999999999
Q ss_pred HHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 179 AWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
|...+++...... .+...++.+...+...|++++|+..+++..+.. +-+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999988752 256778888889999999999999999998862 44677888999999999999999999998765
No 21
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=5.3e-15 Score=118.98 Aligned_cols=247 Identities=15% Similarity=0.070 Sum_probs=182.5
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHh---------ccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFC---------LTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVE 72 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 72 (260)
++|.+.|++..+.. |.++..|..+..++. ..+++++|...+++..+.+ |.+..++..+...+...|+++
T Consensus 278 ~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 278 QQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence 57888899888875 335666766665544 2345899999999998886 668888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 73 ESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 73 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
+|...+++..+.++. +...+..+...+...|++++|...+++..+.+ |.+...+..++..+...|++++|...+++..
T Consensus 356 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 999999999987533 56678888999999999999999999998875 3333344445555677899999999999887
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCh
Q 044047 153 VLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK-GVAPNC 230 (260)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~ 230 (260)
....+.++..+..+..++...|+.++|...+.++... .|+ ....+.+...+...| ++|...++.+.+. ...|..
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 6542335666788888999999999999999887664 233 444556666777777 4788878777654 122222
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 231 VTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
..+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 510 ~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 510 PGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred chH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 222 44455566777777665 776654
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.2e-15 Score=117.72 Aligned_cols=249 Identities=14% Similarity=0.091 Sum_probs=196.6
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcC-------------------------------
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDING------------------------------- 50 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------- 50 (260)
.+|...|+.+.++ +.-+..+...+..+|...+++++|.++|+.+.+..
T Consensus 336 ~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 336 REALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4688888886655 34455788889999999999999999999886643
Q ss_pred --CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhH
Q 044047 51 --CMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTY 128 (260)
Q Consensus 51 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 128 (260)
-+-.+.+|.++..+|..+++.+.|++.|++..+.... ...+|+.+..-+.....+|.|...|+...... +.+-..|
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAw 492 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAW 492 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHH
Confidence 1335678889999999999999999999998875332 67888888888888889999999998876654 3445566
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhc
Q 044047 129 NTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCND 208 (260)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (260)
.-+.-.|.+.++++.|+-.|++....+ +-+......+...+.+.|+.++|+++++++...... |+..--.-+..+...
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhh
Confidence 677888999999999999999888776 556777788888889999999999999998876543 444444556677788
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 209 GQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 209 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
+++++|+..++++++. ++-+..+|..+...|.+.|+.+.|+.-|.-+
T Consensus 571 ~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 571 GRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred cchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 9999999999999885 4445677778889999999999888766544
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=7.6e-15 Score=127.50 Aligned_cols=247 Identities=12% Similarity=0.061 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|++.|++..+.. |.++..+..+...+.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++++
T Consensus 478 ~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 478 AQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 46777777777664 3356667777777777888888888887776543 445555555555566677777777777765
Q ss_pred HhcCCCCCc---------cchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 82 LSKGIRPTV---------VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 82 ~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
......++. ..+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..++.+.
T Consensus 556 ~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al 630 (1157)
T PRK11447 556 PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL 630 (1157)
T ss_pred CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432211111 1122345567778888888888772 35666778889999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CC--
Q 044047 153 VLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGV--AP-- 228 (260)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p-- 228 (260)
... +.++..+..++..+...|++++|.+.++.+.+... .+...+..+..++...|++++|.++++++..... +|
T Consensus 631 ~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 708 (1157)
T PRK11447 631 TRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSM 708 (1157)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcch
Confidence 875 66788999999999999999999999998876532 2456677788899999999999999999987522 22
Q ss_pred -ChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 229 -NCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 229 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
+...+..+...+...|++++|.+.+++..
T Consensus 709 ~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 709 ESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22456667888999999999999999875
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=2.3e-14 Score=111.32 Aligned_cols=227 Identities=8% Similarity=-0.041 Sum_probs=132.5
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchH-HHHHHH---hc
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYN-TLFHGL---FE 102 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~ 102 (260)
...+...|+++.|...++.+.+.+ |.+..++..+...+...|++++|.+.+..+.+.++. +...+. .-..++ ..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555443 334445555555555555555555555555554332 111111 111111 11
Q ss_pred cccHHHHHHHHHHHhhcC---CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH--HHHHHHHHHhcCCHH
Q 044047 103 IHQVEHALKLFDEMQHSD---VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEA--YSCLIDGLCKIGKLE 177 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 177 (260)
.+..+.....+..+.+.. .+.+...+..+...+...|+.++|.+.+++..+.. +.+... ...........++.+
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChH
Confidence 111111122222222221 11255666677777888888888888888887754 222211 111122223456777
Q ss_pred HHHHHHHhhhhCCCCCch--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 178 TAWELFQSLPRVGLMPNV--VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
.+.+.++...+.. +-|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888887776653 1234 556688899999999999999999644444578998899999999999999999999987
Q ss_pred Hh
Q 044047 256 MD 257 (260)
Q Consensus 256 m~ 257 (260)
-.
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 53
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=4.9e-17 Score=120.25 Aligned_cols=228 Identities=15% Similarity=0.161 Sum_probs=101.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcc
Q 044047 25 TLIDGFCLTGEIDRARELFVSMDING-CMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEI 103 (260)
Q Consensus 25 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (260)
.+...+.+.|++++|.++++...... .+.+...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 56888999999999999996654443 2456667777777888899999999999999987654 67778788877 789
Q ss_pred ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC-CCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 044047 104 HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK-CELGIEAYSCLIDGLCKIGKLETAWEL 182 (260)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 182 (260)
+++++|.++++...+.. +++..+..++..+...++++++..+++.+.... .+.++..|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876543 556677888899999999999999999977533 346778889999999999999999999
Q ss_pred HHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 183 FQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+++..+..+ .|......++..+...|+.+++.+++....+.. +.|+..+..+..++...|+.++|..++++..+
T Consensus 169 ~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 169 YRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 999998742 257788899999999999999999999888763 56777888999999999999999999998765
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=5.1e-14 Score=118.44 Aligned_cols=244 Identities=11% Similarity=-0.035 Sum_probs=191.9
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|+..+....... |+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++.
T Consensus 493 ~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 493 GVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 46777777776653 45444444555567899999999999998655 455566777788899999999999999999
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHH
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIE 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (260)
.+.... +...+..+.......|++++|...+++..+.. |+...+..+..++.+.|++++|+..++...... +.+..
T Consensus 569 L~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~ 644 (987)
T PRK09782 569 EQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSN 644 (987)
T ss_pred HhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 886422 22223333334445699999999999998865 468889999999999999999999999999876 66788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHH
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNC-VTFNTLMLGC 240 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~ 240 (260)
.++.+...+...|++++|...++...+... -+...+..+..++...|++++|...+++..+. .|+. .+........
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHH
Confidence 899999999999999999999999988643 35778899999999999999999999999985 4543 4444555666
Q ss_pred HhcCchhHHHHHHHHH
Q 044047 241 IRNNETSKVVELLHRM 256 (260)
Q Consensus 241 ~~~~~~~~a~~~~~~m 256 (260)
.+..+++.+.+-+++.
T Consensus 722 ~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 722 QQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777777766654
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.6e-14 Score=106.69 Aligned_cols=241 Identities=18% Similarity=0.263 Sum_probs=194.5
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHH
Q 044047 16 VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNT 95 (260)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (260)
.|.+..+|.++|.++|+-...+.|.+++++..+...+.+..+||.+|.+-.-..+ .+++.+|....+.||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 3557889999999999999999999999999887778999999999976544333 788999999999999999999
Q ss_pred HHHHHhccccHHH----HHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHH-HHHHHHHhhh----cCC----CcCHHH
Q 044047 96 LFHGLFEIHQVEH----ALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVE-AAELFRTLRV----LKC----ELGIEA 162 (260)
Q Consensus 96 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~ 162 (260)
++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.+ +.+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 56778889999999999999999999999888754 4445554432 212 234456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCC----CCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVG----LMPN---VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNT 235 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 235 (260)
|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.....|+.|.-.-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 6777888889999998888876554321 2233 23466777888888899999999999998878899999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcC
Q 044047 236 LMLGCIRNNETSKVVELLHRMDERN 260 (260)
Q Consensus 236 l~~~~~~~~~~~~a~~~~~~m~~~~ 260 (260)
++++....|.++-..+++..++..|
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhh
Confidence 9999999999999999999887654
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=3.9e-14 Score=102.00 Aligned_cols=202 Identities=11% Similarity=0.057 Sum_probs=144.0
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 044047 53 HNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFI 132 (260)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (260)
.....+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 3456667777777778888888888877766532 245566677777777888888888887777654 44556677777
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCCh
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLKC-ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQM 211 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (260)
..+...|++++|.+.++....... +.....+..+...+...|++++|...+.+..+... .+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCH
Confidence 777888888888888887765421 22345566677778888888888888888776532 2455677777888888888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 212 DKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 212 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888887765 344566666777777788888888887776654
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=7.3e-14 Score=100.60 Aligned_cols=203 Identities=13% Similarity=0.075 Sum_probs=171.4
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 346778889999999999999999999998765 566788899999999999999999999999887543 566788888
Q ss_pred HHHhccccHHHHHHHHHHHhhcCC-CcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDV-AAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL 176 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (260)
..+...|++++|...+++...... +.....+..+..++...|++++|...+.+..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999876432 2344567778889999999999999999988765 45677888999999999999
Q ss_pred HHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 177 ETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
++|...+++.... .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998876 2345677778888888999999999998887653
No 30
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.70 E-value=2.5e-13 Score=113.41 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=182.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|++++....... +.+...+..+...+...|++++|..+|++..+.. |.+...+..+..++...|++++|+..++++
T Consensus 32 ~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~ 109 (765)
T PRK10049 32 AEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQL 109 (765)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56788888887633 4456678889999999999999999999988775 566777888889999999999999999999
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHH------------
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFR------------ 149 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------ 149 (260)
.+.... +.. +..+..++...|+.++|+..++++.+.. |.+...+..+..++...+..+.|++.++
T Consensus 110 l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l 186 (765)
T PRK10049 110 VSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDL 186 (765)
T ss_pred HHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHH
Confidence 887333 455 8888888999999999999999998875 5566666667777766666665554444
Q ss_pred ----------------------------------Hhhhc-CCCcCHH-HHH----HHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 150 ----------------------------------TLRVL-KCELGIE-AYS----CLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 150 ----------------------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
.+... ...|+.. .+. ..+..+...|++++|...|+.+.+.
T Consensus 187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~ 266 (765)
T PRK10049 187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE 266 (765)
T ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 22221 0111111 111 1123445778999999999999887
Q ss_pred CCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 190 GLM-PNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAP---NCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 190 ~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
+.. |+. ....+...+...|++++|+..|+++.+..... .......+..++...|++++|.++++++.+.
T Consensus 267 ~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 267 GQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred CCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 532 332 22335778899999999999999987642111 1345566777889999999999999988653
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.70 E-value=6.7e-14 Score=112.70 Aligned_cols=233 Identities=12% Similarity=0.012 Sum_probs=175.2
Q ss_pred ccHHHHHHHHHHHhc-----cCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh---------cCChHHHHHHHHHHHh
Q 044047 18 PNAFVYSTLIDGFCL-----TGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK---------TKDVEESLNLYSEMLS 83 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 83 (260)
.+...|...+.+... .+++++|...|++..+.. |.+...|..+..++.. .+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 355666666665322 245789999999998875 5556677776665542 3458899999999998
Q ss_pred cCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHH
Q 044047 84 KGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAY 163 (260)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (260)
.... +...+..+...+...|++++|...|++..+.+ |.+...+..+..++...|++++|...++...... +.+...+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhH
Confidence 7544 67788888888999999999999999999886 6677888899999999999999999999998875 3344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHh
Q 044047 164 SCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNC-VTFNTLMLGCIR 242 (260)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 242 (260)
..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+.++... .|+. ...+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 4455556778999999999999876532224556777888899999999999999987664 4443 334455566677
Q ss_pred cCchhHHHHHHHHHhh
Q 044047 243 NNETSKVVELLHRMDE 258 (260)
Q Consensus 243 ~~~~~~a~~~~~~m~~ 258 (260)
.| +.|...++++.+
T Consensus 488 ~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 488 NS--ERALPTIREFLE 501 (553)
T ss_pred cH--HHHHHHHHHHHH
Confidence 77 477777777654
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2e-13 Score=101.02 Aligned_cols=253 Identities=14% Similarity=0.213 Sum_probs=158.8
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHH----HHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEE----SLNL 77 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~ 77 (260)
++|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++++..+.|+++. |.++
T Consensus 224 ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqi 299 (625)
T KOG4422|consen 224 ERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQI 299 (625)
T ss_pred HHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHH
Confidence 67888888888877788888888888765432 237788888888888999999999999999997764 5677
Q ss_pred HHHHHhcCCCCCccchHHHHHHHhccccHHH-HHHHHHHHhh----cCC----CcchhhHHHHHHHHHhcCcHHHHHHHH
Q 044047 78 YSEMLSKGIRPTVVTYNTLFHGLFEIHQVEH-ALKLFDEMQH----SDV----AAETSTYNTFIDGLCKNGYIVEAAELF 148 (260)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 148 (260)
+.+|++.|+.|...+|..++..+.+.++..+ +..++..+.. ... +.+...|...+..|.+..+.+-|.++.
T Consensus 300 l~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~ 379 (625)
T KOG4422|consen 300 LGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVH 379 (625)
T ss_pred HHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 7888888999999999999988888877754 3333333321 111 234455667777777777777777665
Q ss_pred HHhhhcC----CCcCH---HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 149 RTLRVLK----CELGI---EAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 149 ~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
.-+.... ++|+. .-|..+....++....+.-...|+.|.-.-+-|+..+...++++....|.++-.-++|..+
T Consensus 380 ~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~ 459 (625)
T KOG4422|consen 380 GLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDS 459 (625)
T ss_pred HHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHH
Confidence 5443211 12221 1233344444455555555555555544434444444444555444444444444444443
Q ss_pred HhCC------------------------------------------------------CCCChhhHHHHHHHHHhcCchh
Q 044047 222 EAKG------------------------------------------------------VAPNCVTFNTLMLGCIRNNETS 247 (260)
Q Consensus 222 ~~~~------------------------------------------------------~~p~~~~~~~l~~~~~~~~~~~ 247 (260)
...| ..-.....+.....+.+.|..+
T Consensus 460 ~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~q 539 (625)
T KOG4422|consen 460 KEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQ 539 (625)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHH
Confidence 3322 1112334455666677888888
Q ss_pred HHHHHHHHHhh
Q 044047 248 KVVELLHRMDE 258 (260)
Q Consensus 248 ~a~~~~~~m~~ 258 (260)
+|.+++..+..
T Consensus 540 kA~e~l~l~~~ 550 (625)
T KOG4422|consen 540 KAWEMLGLFLR 550 (625)
T ss_pred HHHHHHHHHHh
Confidence 88888877644
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=5.7e-13 Score=103.12 Aligned_cols=218 Identities=7% Similarity=0.006 Sum_probs=165.5
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCchhh-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchH--HHHHHHhccccHHH
Q 044047 32 LTGEIDRARELFVSMDINGCMHNVVT-YNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYN--TLFHGLFEIHQVEH 108 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 108 (260)
-.|+++.|.+.+....+.. +++.. |........+.|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888765542 23333 334455558899999999999999875 44543333 34678889999999
Q ss_pred HHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC--------------------------------
Q 044047 109 ALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC-------------------------------- 156 (260)
Q Consensus 109 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------------- 156 (260)
|...++++.+.. |.++.....+...|.+.|++++|.+++..+.+.+.
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998887 67788899999999999999999988877764332
Q ss_pred ---------CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 044047 157 ---------ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVA 227 (260)
Q Consensus 157 ---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 227 (260)
+.++.....+...+...|+.++|.+++++..+. +|+... .++.+....++.+++.+..+...+. .+
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P 325 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HG 325 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CC
Confidence 123445556677888899999999999888774 344422 2334444668999999999998876 34
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 228 PNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 228 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
-|+..+..+...|.+.+++++|.+.|+...+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 45667788899999999999999999988654
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.4e-13 Score=99.96 Aligned_cols=247 Identities=11% Similarity=0.040 Sum_probs=187.8
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMH---NVVTYNTLINGYCKTKDVEESLNLYS 79 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 79 (260)
++.+-.+.+...|.+.+...-+....+.-...++++|+.+|+++.+.+ |- |..+|..++-.-.... .+..+.
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~s----kLs~LA 319 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKS----KLSYLA 319 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhH----HHHHHH
Confidence 445555556666666666555555556666777888888888877663 21 4555655554322211 122222
Q ss_pred HHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC
Q 044047 80 EMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELG 159 (260)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (260)
+-...=-+--+.|..++...|+-.++.++|...|++..+.+ |.....|+.+..-|....+...|...++..++.. |.|
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 21111112345677778888888999999999999999987 6677889999999999999999999999999876 778
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044047 160 IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLG 239 (260)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 239 (260)
-..|..+.++|.-.+...-|+-.|++..... +-|...|..|..+|.+.++.++|+..|......|- .+...+..|...
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakL 475 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKL 475 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHH
Confidence 8999999999999999999999999998864 23688999999999999999999999999988753 366888999999
Q ss_pred HHhcCchhHHHHHHHHHhh
Q 044047 240 CIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 240 ~~~~~~~~~a~~~~~~m~~ 258 (260)
+-+.++.++|.+.+.+-++
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999998887554
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=4e-13 Score=95.82 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcC-CCC--chhhHHHHHHHHHhcCChHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDING-CMH--NVVTYNTLINGYCKTKDVEESLNLY 78 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 78 (260)
++|.++|-+|.+.. +-+..+.-+|.+.|-+.|..+.|+++.+.+.... .+. -......+..-|...|-++.|..+|
T Consensus 52 dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 52 DKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred chHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 45666666666643 3344555566666666777777777766665431 000 0122344555566666666676666
Q ss_pred HHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcc----hhhHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 044047 79 SEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAE----TSTYNTFIDGLCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (260)
..+.+.|.- -......|+..|-...+|++|+.+-+++.+.+-.+. ...|.-+...+....+++.|..++.+..+.
T Consensus 131 ~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 131 NQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 666654322 344555566666666666666666666655442222 122334444444555666666666665544
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 155 KCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
+ +..+..--.+.+.....|+++.|.+.++...+.+...-..+...|..+|...|+.++...++.++.+
T Consensus 210 ~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 210 D-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred C-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 2233333444555666666666666666666554333344555566666666666666666555544
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.3e-13 Score=98.32 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=182.5
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc------cchHHHHHHHhcccc
Q 044047 32 LTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTV------VTYNTLFHGLFEIHQ 105 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~ 105 (260)
-.++.++|.++|-+|.+.+ +.+..+.-++.+.|-+.|..+.|+++.+.+.++ ||. .....|.+-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 3578999999999999865 667778889999999999999999999999886 332 223346667888999
Q ss_pred HHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH----HHHHHHHHHHHhcCCHHHHHH
Q 044047 106 VEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGI----EAYSCLIDGLCKIGKLETAWE 181 (260)
Q Consensus 106 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 181 (260)
+|.|+.+|..+.+.+ ..-......|+..|....+|++|+..-+++.+.+..+.. ..|..+...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999998865 445667889999999999999999999988877644432 356777888888899999999
Q ss_pred HHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 182 LFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
++.+..+.+.+ +...--.+.+.....|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++...++.++.+.
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99998876432 344555677889999999999999999998865555778889999999999999999999887653
No 37
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=3.7e-14 Score=101.37 Aligned_cols=228 Identities=16% Similarity=0.094 Sum_probs=197.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccch-HHHHHHHhc
Q 044047 24 STLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTY-NTLFHGLFE 102 (260)
Q Consensus 24 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 102 (260)
+.+..+|.+.|-+.+|...++..... .|-+.||..+-+.|.+.+++..|+.++.+-.+. .|..+|| .-..+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56889999999999999999998876 688899999999999999999999999998775 4444554 456777888
Q ss_pred cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 044047 103 IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWEL 182 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 182 (260)
.++.++|.++|+...+.. +.+......+...|.-.++++.|++.++++...| .-++..|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999998875 6788888888889999999999999999999999 55889999999999999999999999
Q ss_pred HHhhhhCCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 183 FQSLPRVGLMPN--VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 183 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
|.+....--.|+ ...|..+.......|++..|.+.|+-.+..+ +-+...++.|...-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999887654455 4678888888889999999999999988764 44678899999999999999999999987654
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=1.8e-12 Score=108.36 Aligned_cols=154 Identities=8% Similarity=-0.036 Sum_probs=67.8
Q ss_pred ccccHHHHHHHHHHHhhcCCC-cchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc---CHHHHHHHHHHHHhcCCHH
Q 044047 102 EIHQVEHALKLFDEMQHSDVA-AETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL---GIEAYSCLIDGLCKIGKLE 177 (260)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 177 (260)
..|+.++|+..|+.+.+.+.+ |+ .....+..+|...|++++|+..|+.+....... .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 334555555555555444311 11 111123445555555555555555544322100 1223333444455555555
Q ss_pred HHHHHHHhhhhCCC-----------CCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 044047 178 TAWELFQSLPRVGL-----------MPN---VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRN 243 (260)
Q Consensus 178 ~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 243 (260)
+|..+++.+..... .|+ ...+..+...+...|++++|+++++++... .+.+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 55555555544310 011 112233444444555555555555555443 233344444455555555
Q ss_pred CchhHHHHHHHHHh
Q 044047 244 NETSKVVELLHRMD 257 (260)
Q Consensus 244 ~~~~~a~~~~~~m~ 257 (260)
|++++|++.+++..
T Consensus 407 g~~~~A~~~l~~al 420 (765)
T PRK10049 407 GWPRAAENELKKAE 420 (765)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555443
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=3.1e-12 Score=93.75 Aligned_cols=247 Identities=11% Similarity=0.097 Sum_probs=147.2
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
.+|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+..++.+..+..-.++....-+..+.....|+++.|..-+.++
T Consensus 101 ~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~l 179 (400)
T COG3071 101 QQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQL 179 (400)
T ss_pred HHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34555555544444332 23344444555556666666666666554422344455555555555566666666655555
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCC---------------------------------------
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVA--------------------------------------- 122 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------------- 122 (260)
.+.+.. ++.......++|.+.|++..+..++..+.+.+.-
T Consensus 180 l~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~ 258 (400)
T COG3071 180 LEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK 258 (400)
T ss_pred HHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH
Confidence 555433 4455555556666666666665555555554432
Q ss_pred --cchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHH
Q 044047 123 --AETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNI 200 (260)
Q Consensus 123 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (260)
.++..-..++.-+.++|+.++|.++.++..+.+..|+. ...-.+.+.++.+.-.+..+.-.+.. +-++..+..
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~t 333 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLST 333 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHH
Confidence 23333444455555555555555555555544433331 11122334445544444444433332 224567888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 201 MIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 201 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
|...|.+.+.|.+|...|+...+ ..|+..+|..+..++.+.|+..+|.++.++..
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999999999998777 47999999999999999999999999888753
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=3e-12 Score=106.00 Aligned_cols=228 Identities=12% Similarity=0.041 Sum_probs=130.1
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccH
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQV 106 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (260)
...+...|++++|.++|+++.+.. |.++..+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 334455555555555555555443 333444445555555555555555555555443 23333332332233233444
Q ss_pred HHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHh-----------------------------------
Q 044047 107 EHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTL----------------------------------- 151 (260)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------------------------------- 151 (260)
.+|+..++++.+.. |.+...+..+..++.+.|-...|.++...-
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 34556666655553 444445555555555555444444333211
Q ss_pred -------------hh-cCCCcC-HHH----HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChH
Q 044047 152 -------------RV-LKCELG-IEA----YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 152 -------------~~-~~~~~~-~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (260)
.. .+..|. ... ..-.+-++...|++.++.+.++.+...+.+....+-..+..+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 00 000011 111 11234456677888888888888887775544567778888999999999
Q ss_pred HHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 213 KAHDLFLDMEAKG-----VAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 213 ~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+|..+++.+.... .+++......|.-++..++++++|..+++++.+
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 9999999886542 123344457788899999999999999998875
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=3.5e-12 Score=99.26 Aligned_cols=245 Identities=9% Similarity=-0.015 Sum_probs=173.1
Q ss_pred hhHHHHHHHHHHcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch--hhHHHHHHHHHhcCChHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNA-FVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV--VTYNTLINGYCKTKDVEESLNLY 78 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~ 78 (260)
+.|.+.+....+. .|++ ..+-....+..+.|+++.|.+.+.+..+.. |+. .........+...|+++.|...+
T Consensus 101 ~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 101 AKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred HHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4677777766655 3443 344455677888899999999999987653 443 34444588888999999999999
Q ss_pred HHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHH-HHHHHH---HhcCcHHHHHHHHHHhhhc
Q 044047 79 SEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYN-TFIDGL---CKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~~~ 154 (260)
+.+.+..+. +..+...+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.+...+..+...
T Consensus 177 ~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 177 DKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999998644 6678889999999999999999999999988744 333332 111111 2222233333344444433
Q ss_pred C---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhh---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 044047 155 K---CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVT---YNIMIHGFCNDGQMDKAHDLFLDMEAKGVAP 228 (260)
Q Consensus 155 ~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 228 (260)
. .+.++..+..++..+...|+.++|.+++++..+.. ||... .....-.....++.+.+.+.++...+. .+-
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCC
Confidence 2 12478889999999999999999999999998864 34331 122222233467888999999888875 233
Q ss_pred Ch--hhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 229 NC--VTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 229 ~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
|+ ....++...+.+.|++++|.+.|+.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 44 5566889999999999999999994
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=6.7e-12 Score=103.96 Aligned_cols=250 Identities=14% Similarity=0.090 Sum_probs=149.6
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|+++|+++.+.. |.++..+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 57889999998876 4457777788888889999999999999887763 55555544444444456665688888887
Q ss_pred HhcCCCCCccchHHHHH---------------------------------------------------------------
Q 044047 82 LSKGIRPTVVTYNTLFH--------------------------------------------------------------- 98 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~--------------------------------------------------------------- 98 (260)
.+..+. +...+..+..
T Consensus 196 l~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 196 VRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 765321 2222222222
Q ss_pred --------------------------HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 99 --------------------------GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 99 --------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
++...++..++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 223344555555555655555544344455566666666666666666666664
Q ss_pred hcC-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC-----------CCc---hhhHHHHHHHHHhcCChHH
Q 044047 153 VLK-----CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGL-----------MPN---VVTYNIMIHGFCNDGQMDK 213 (260)
Q Consensus 153 ~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~ 213 (260)
... .+++......|..++...+++++|..+++.+.+... .|| ...+..++..+...|+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 432 122333345566666666666666666666655211 122 1223344555566666666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 214 AHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 214 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
|++.++++... -|-|......+...+...|.+.+|.+.++..
T Consensus 435 Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 435 AQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 66666666554 2445666666666666666666666666543
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.6e-12 Score=95.22 Aligned_cols=246 Identities=11% Similarity=0.057 Sum_probs=184.7
Q ss_pred ChhHHHHHHHHHHcCC--CccHHHHHHHHHHHhccCCHH-HHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 044047 1 MDEASRLLDLMIQRGV--RPNAFVYSTLIDGFCLTGEID-RARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNL 77 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 77 (260)
+++|+.+|+++.+..+ -.|..+|..++-.--....+. .|..++ ..+ +--+.|...+.+.|+-.++.++|...
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~----~id-KyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS----NID-KYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH----Hhc-cCCccceeeehhHHHHHHhHHHHHHH
Confidence 5789999999998752 136778877764433222221 122222 112 34566777888888888999999999
Q ss_pred HHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 044047 78 YSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE 157 (260)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (260)
|++..+.+.. ....|+.+.+-|....+...|..-++...+.+ |.|-..|-.+.++|.-.+.+.-|+-.|++..... |
T Consensus 353 FkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-P 429 (559)
T KOG1155|consen 353 FKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-P 429 (559)
T ss_pred HHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-C
Confidence 9998887554 57788888889999999999999999998886 7788889999999999999999999999888776 7
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CC-Chh
Q 044047 158 LGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK----GV-AP-NCV 231 (260)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p-~~~ 231 (260)
-|+..|.++..+|.+.++.++|.+.|......|- .+...+..|.+.|.+.++..+|...|.+.++. |. .| ...
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 7889999999999999999999999999887753 35678889999999999999999888877652 22 22 122
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHH
Q 044047 232 TFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
...-|..-+.+.+++++|..+...
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHH
Confidence 233355666777888777664443
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=4.3e-13 Score=104.01 Aligned_cols=203 Identities=13% Similarity=0.065 Sum_probs=175.0
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHH
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTL 96 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 96 (260)
+.++.+|.++..+|.-+++.+.|++.|+...+.+ +....+|+.+..-++...++|.|...|+..+..... +-.+|.-+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhh
Confidence 5578999999999999999999999999998876 557889999999999999999999999998765322 34455567
Q ss_pred HHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH
Q 044047 97 FHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL 176 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (260)
...|.+.++.+.|+-.|+...+.+ |.+......+...+-+.|+.++|++++++..... +.++..-...+..+...++.
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcch
Confidence 788999999999999999999887 6778888889999999999999999999998776 55666656677788889999
Q ss_pred HHHHHHHHhhhhCCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044047 177 ETAWELFQSLPRVGLMP-NVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKG 225 (260)
Q Consensus 177 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 225 (260)
++|+..++++++. .| +...+..+.+.|.+.|+.+.|+.-|.-+.+..
T Consensus 574 ~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 574 VEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 9999999999986 34 46778889999999999999999999888753
No 45
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=3.4e-13 Score=107.74 Aligned_cols=220 Identities=19% Similarity=0.289 Sum_probs=145.7
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044047 6 RLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKG 85 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 85 (260)
+++-.+...|+.|+..||..+|.-||..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 8888866554444444555444444444443332
Q ss_pred CCCCccchHHHHHHHhccccH--------------------------------------------------------HHH
Q 044047 86 IRPTVVTYNTLFHGLFEIHQV--------------------------------------------------------EHA 109 (260)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~~--------------------------------------------------------~~a 109 (260)
.|...||..|+.+|...|+. +.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 33444444454444444443 222
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 110 LKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
++++..+...... . .+...++-+.... ....++........-.|++.+|...+..-...|+.+.|..++.+|.+.
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 2222222111100 0 0000122111111 112222222222222589999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCc
Q 044047 190 GLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNE 245 (260)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 245 (260)
|.+.+..-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999888888888766 88889999999999999999999999888877777554
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.56 E-value=3.5e-11 Score=89.53 Aligned_cols=223 Identities=14% Similarity=-0.000 Sum_probs=154.8
Q ss_pred hHHHHHHHHHHcC-CCc--cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 3 EASRLLDLMIQRG-VRP--NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYS 79 (260)
Q Consensus 3 ~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 79 (260)
.++.-+.++.... ..| .+..|..+...+...|+.++|...|++..+.. |.+...|+.+...+...|++++|...|+
T Consensus 44 ~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 44 VILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3555566666532 122 24568888888999999999999999998876 6678999999999999999999999999
Q ss_pred HHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC
Q 044047 80 EMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELG 159 (260)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (260)
+..+.... +..++..+..++...|++++|.+.|+...+.. |.+. ........+...+++++|...+.+..... .++
T Consensus 123 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~ 198 (296)
T PRK11189 123 SVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKE 198 (296)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-Ccc
Confidence 99886433 46677888888899999999999999988765 3333 22222233456778999999997655332 222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhh---CCC--CC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 044047 160 IEAYSCLIDGLCKIGKLETAWELFQSLPR---VGL--MP-NVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTF 233 (260)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 233 (260)
...+ . ......|+...+ ..+..+.+ ..+ .| ...+|..+...+...|++++|...|++..+.+ +|+..-+
T Consensus 199 ~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~ 273 (296)
T PRK11189 199 QWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEH 273 (296)
T ss_pred ccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHH
Confidence 2211 2 223345555443 23433332 111 11 24578899999999999999999999999864 3455544
Q ss_pred HH
Q 044047 234 NT 235 (260)
Q Consensus 234 ~~ 235 (260)
..
T Consensus 274 ~~ 275 (296)
T PRK11189 274 RY 275 (296)
T ss_pred HH
Confidence 44
No 47
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.55 E-value=9.5e-12 Score=96.84 Aligned_cols=239 Identities=18% Similarity=0.140 Sum_probs=177.6
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhc-----CC-CCch-hhHHHHHHHHHhcCChHHHHHHHHHHHhc-----CC
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDIN-----GC-MHNV-VTYNTLINGYCKTKDVEESLNLYSEMLSK-----GI 86 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 86 (260)
-..+...+...|...|+++.|..+++...+. |. -|.. ...+.+...|...+++.+|..+|+++... |.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677999999999999999999988654 21 1222 23345777899999999999999998753 22
Q ss_pred C--CCccchHHHHHHHhccccHHHHHHHHHHHhhc-----CC-Ccc-hhhHHHHHHHHHhcCcHHHHHHHHHHhhhc---
Q 044047 87 R--PTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS-----DV-AAE-TSTYNTFIDGLCKNGYIVEAAELFRTLRVL--- 154 (260)
Q Consensus 87 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 154 (260)
. .-..+++.|..+|.+.|++++|..+++...+. +. .|. ...++.+...+...+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 2 12456778888999999999998888775321 11 122 335667788899999999999998865422
Q ss_pred CCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC----C--C-CchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 155 KCEL----GIEAYSCLIDGLCKIGKLETAWELFQSLPRVG----L--M-PNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 155 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
.+.+ -..+++.+...|...|++++|.++++.+.... - . -....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1111 24578999999999999999999999876431 1 1 1245678889999999999999999987643
Q ss_pred C----CC--CCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 224 K----GV--APNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 224 ~----~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
. |. +-...+|..|...|...|+++.|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 22 2235788999999999999999999988765
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=5.6e-12 Score=94.44 Aligned_cols=208 Identities=15% Similarity=0.144 Sum_probs=161.4
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHH
Q 044047 32 LTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALK 111 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 111 (260)
..|++++|.+.|.+....+..-....||.- -.+-..|+.++|+..|-++... +..+..+...+...|....+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 357888888888888766533333334433 3456778899999988887654 33366777778888888888999999
Q ss_pred HHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 044047 112 LFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGL 191 (260)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 191 (260)
++.+.... +|.++...+.|...|-+.|+-..|++.+-+--.. ++-+..+...+...|....-++++...|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 88887665 5778889999999999999999998877554433 467888889999999999999999999988765 4
Q ss_pred CCchhhHHHHHHHH-HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCch
Q 044047 192 MPNVVTYNIMIHGF-CNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNET 246 (260)
Q Consensus 192 ~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 246 (260)
+|+..-|..++..| .+.|++.+|.++++....+ ++.|......|++.+...|..
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 78999998877655 4689999999999998776 777888888888888777653
No 49
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.55 E-value=4.9e-11 Score=81.49 Aligned_cols=206 Identities=15% Similarity=0.039 Sum_probs=153.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHh
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLF 101 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (260)
+...|.-.|.+.|+...|..-+++.++.+ |.+..+|..+...|.+.|+.+.|.+-|++..+.... +..+.|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 45566777888888888888888888776 667778888888888888888888888888876544 6777888888888
Q ss_pred ccccHHHHHHHHHHHhhc-CCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 044047 102 EIHQVEHALKLFDEMQHS-DVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAW 180 (260)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 180 (260)
..|++++|...|++.... ...-...+|..+.-+..+.|+.+.|...|++..... +-.+...-.+.......|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 888888888888876543 222335577788888888888888888888877765 334455667777788888888888
Q ss_pred HHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 044047 181 ELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTF 233 (260)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 233 (260)
..++.....+. ++..+....|+.-...|+.+.+.+.=..+... .|...-+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 88888777664 67777777777777888887777766666553 4444433
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=1.7e-10 Score=84.89 Aligned_cols=221 Identities=13% Similarity=0.071 Sum_probs=165.8
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHH
Q 044047 32 LTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALK 111 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 111 (260)
-.|+|.+|+++.....+.+ +.....|..-..+--..||.+.+-.++.+..+....++....-...+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4799999999999987776 455667777788888999999999999999887556677777788888999999999999
Q ss_pred HHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc---------------------------------
Q 044047 112 LFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL--------------------------------- 158 (260)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------------------- 158 (260)
-.+++.+.+ +.++.......++|.+.|++.....++..+.+.+.--
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999887 6778899999999999999999999998886554322
Q ss_pred --------CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 044047 159 --------GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNC 230 (260)
Q Consensus 159 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 230 (260)
++..-..++.-+.++|+.++|.++..+..+.+..|+ . ...-.+.+.++.+.-++..++-.+. .+-++
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 233334555556666666677666666666554433 1 1112234555555555555555544 33356
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 231 VTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
..+..|...|.+.+.|.+|.+.|+...+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 77889999999999999999999876543
No 51
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=4e-14 Score=75.38 Aligned_cols=50 Identities=40% Similarity=0.889 Sum_probs=36.3
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 044047 193 PNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIR 242 (260)
Q Consensus 193 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 242 (260)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777776653
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=3.7e-14 Score=75.54 Aligned_cols=49 Identities=43% Similarity=0.841 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHH
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYC 66 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (260)
||..+||+++.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=9.7e-12 Score=93.16 Aligned_cols=188 Identities=16% Similarity=0.173 Sum_probs=149.5
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHH
Q 044047 66 CKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAA 145 (260)
Q Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (260)
...|++++|.+.|++.......-....|+ +.-.+...|+.++|+..|-++... +..+..+...+...|-...++..|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 34688899999999888763332222333 333466789999999999887554 3456777888899999999999999
Q ss_pred HHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044047 146 ELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKG 225 (260)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 225 (260)
+++-..... ++.|+.+.+-+...|-+.|+-..|.+.+-+--+. .+-|..+...|...|....-+++++.+|++..-
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 999876654 4778999999999999999999999988765544 345788999999999999999999999998765
Q ss_pred CCCChhhHHHHHHHH-HhcCchhHHHHHHHHHhhc
Q 044047 226 VAPNCVTFNTLMLGC-IRNNETSKVVELLHRMDER 259 (260)
Q Consensus 226 ~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~ 259 (260)
+.|+..-|..++..| .+.|++.+|.++++...++
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 689999999888555 5689999999999987653
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=3.8e-12 Score=91.30 Aligned_cols=217 Identities=14% Similarity=0.035 Sum_probs=181.1
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
.+|.+-|+.-.+. .|-+.||-.|-..|.+-.+++.|+.++.+-.+.- |-++.....+.+.+-..++.++|.++++..
T Consensus 240 r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 240 RRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred hhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 3566666666655 5678889999999999999999999999877652 445555567778888899999999999999
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC--
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELG-- 159 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 159 (260)
.+... .++.....+...|.-.++++.|+.+|+++.+.|+ .++..|+.+.-+|.-.++++-++..|.+....--.|+
T Consensus 317 lk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 317 LKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred HhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 88643 3677777888889999999999999999999994 5788999999999999999999999988775543344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 160 IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
..+|..+.......|++..|.+.|+-....+.. +..+++.|.-.-.+.|++++|..+++.....
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 457888988899999999999999998876532 5788999998889999999999999988774
No 55
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.52 E-value=1.7e-10 Score=90.80 Aligned_cols=253 Identities=16% Similarity=0.104 Sum_probs=175.7
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhc-----CChHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKT-----KDVEESLN 76 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~ 76 (260)
++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |.+..-|..+..+..-. .+.+...+
T Consensus 21 ~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~ 98 (517)
T PF12569_consen 21 EEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVEKLLE 98 (517)
T ss_pred HHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHHHHHH
Confidence 4677777654443 45566778888999999999999999999999987 45555555555555222 24566677
Q ss_pred HHHHHHhcCCCC-------------------------------CccchHHHHHHHhccccHHHHHHHHHHHhhc----C-
Q 044047 77 LYSEMLSKGIRP-------------------------------TVVTYNTLFHGLFEIHQVEHALKLFDEMQHS----D- 120 (260)
Q Consensus 77 ~~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~- 120 (260)
+++++...-+.. -+.+|+.+-..|......+-...++...... +
T Consensus 99 ~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~ 178 (517)
T PF12569_consen 99 LYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGS 178 (517)
T ss_pred HHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCC
Confidence 777765432110 0123334444444444444444455444321 1
Q ss_pred ---------CCcch--hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 121 ---------VAAET--STYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 121 ---------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
-+|+. +++..+...|...|++++|+..++..+... |-.+..|..-.+.+-+.|++.+|.+.++..+..
T Consensus 179 ~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 179 FSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred CCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 12333 355677888899999999999999988774 444778888899999999999999999999987
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH--------HHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 190 GLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTF--------NTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--------~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
... |...-+..+..+.+.|+.++|..++......+..|....+ .....+|.+.|++..|+..|..+.+
T Consensus 258 D~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 258 DLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred Chh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 654 6777778888899999999999999988876654432221 3456888899999999888876653
No 56
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=1.1e-10 Score=93.84 Aligned_cols=252 Identities=16% Similarity=0.158 Sum_probs=165.6
Q ss_pred ChhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 044047 1 MDEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSE 80 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 80 (260)
+++|.+++.+.++.. +.+...|..|...|-+.|+.+++...+-.+...+ |.|...|..+.....+.|+++.|.-+|.+
T Consensus 155 ~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred HHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 468999999999886 5578889999999999999999988876655544 66778999999999999999999999999
Q ss_pred HHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcc------------------------------------
Q 044047 81 MLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAE------------------------------------ 124 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------------ 124 (260)
.++..+. +...+-.-...|-+.|+...|...|.++.....+.+
T Consensus 233 AI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 8886432 444444455667777777777777766655432111
Q ss_pred ----hhhHHHHHHHHHhcCcHHHHHHHHHHhhh-----------------------------------------------
Q 044047 125 ----TSTYNTFIDGLCKNGYIVEAAELFRTLRV----------------------------------------------- 153 (260)
Q Consensus 125 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------------------------------- 153 (260)
...++.++..+.....++.+.........
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 12233333333333334443333322211
Q ss_pred --------------cC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 044047 154 --------------LK--CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDL 217 (260)
Q Consensus 154 --------------~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 217 (260)
.. +..++..|.-+..++...|++.+|..++..+......-+...|..+.++|...|..++|.+.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 00 11123344556666777777777777777777654333456777777777777777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 218 FLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 218 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
|...+.. -+.+...-..|...+.+.|++++|.+.+..+
T Consensus 472 y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 472 YEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 7777764 2333445556667777777777777777654
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5.2e-11 Score=91.14 Aligned_cols=249 Identities=10% Similarity=-0.012 Sum_probs=160.4
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
+..++.+.+.+.. |+....+..-|.++...|+..+-..+=.++.+.- |..+.+|-.+.-.|.-.|+..+|.+.|.+..
T Consensus 262 ~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat 339 (611)
T KOG1173|consen 262 ECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKAT 339 (611)
T ss_pred HHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHh
Confidence 4455556666553 5556666666667777777666666656665543 5667777777777777777788888777765
Q ss_pred hcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH
Q 044047 83 SKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEA 162 (260)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (260)
..... -...|..+...|+-.+..++|...+...-+.- +-...-+.-+.--|.+.++.+.|.+.|....... |.|+..
T Consensus 340 ~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv 416 (611)
T KOG1173|consen 340 TLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLV 416 (611)
T ss_pred hcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchh
Confidence 54222 24566677777777777777777666554321 1111122334445666777777777777666543 556666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhC----C--CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRV----G--LMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTL 236 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 236 (260)
.+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|+..+++.+.. .+-+..++.++
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asi 495 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASI 495 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHH
Confidence 777766666777777777777765521 0 0012345677777788888888888888877765 35577777777
Q ss_pred HHHHHhcCchhHHHHHHHHHh
Q 044047 237 MLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 237 ~~~~~~~~~~~~a~~~~~~m~ 257 (260)
.-.|...|+++.|.+.|.+..
T Consensus 496 g~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 496 GYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHhcChHHHHHHHHHHH
Confidence 777888888888887777643
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=1.6e-10 Score=79.08 Aligned_cols=198 Identities=12% Similarity=0.033 Sum_probs=169.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
.+...+.-.|...|+...|..-+++.++.... +..+|..+...|.+.|..+.|.+.|++..+.. |.+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 34567778899999999999999999998544 67788999999999999999999999999886 67888999999999
Q ss_pred HhcCcHHHHHHHHHHhhhcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHH
Q 044047 136 CKNGYIVEAAELFRTLRVLK-CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKA 214 (260)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 214 (260)
|..|++++|...|+...... ..--..+|.++.-+..+.|+.+.|...|++..+.... ...+.-.+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 99999999999999987653 2234568899999999999999999999999886432 356777888999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 215 HDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 215 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
..+++.....+. ++..+....|+.-...|+-+.+-++=..+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999888764 899998888898889999988877655443
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.48 E-value=1.3e-10 Score=86.46 Aligned_cols=218 Identities=12% Similarity=-0.065 Sum_probs=157.7
Q ss_pred cCCHHHHHHHHHHHhhcC-CCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHH
Q 044047 33 TGEIDRARELFVSMDING-CMH--NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHA 109 (260)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 109 (260)
.+..+.++.-+.++.... ..| ....|..+...+...|++++|...|++..+..+. +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 456677888888877542 112 2456888888999999999999999999987543 678999999999999999999
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 110 LKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
...|++..+.. |.+..++..+..++...|++++|.+.++...... +.++. .......+...++.++|...+......
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPY-RALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999998875 5567788889999999999999999999988764 33332 222223345577899999999765543
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CC--C-CChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 190 GLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK---GV--A-PNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
. .|+. |.. .......|+...+ ..+..+.+. .. . .....|..+...+.+.|++++|...|++..+.
T Consensus 195 ~-~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 L-DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred C-Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 2332 221 2223345665544 344554432 11 1 13457889999999999999999999988653
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.2e-10 Score=87.89 Aligned_cols=224 Identities=14% Similarity=0.098 Sum_probs=168.0
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHH
Q 044047 29 GFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEH 108 (260)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 108 (260)
.+.-.|+.-.|..-|+...... +.+...|..+...|....+.++....|.+..+.+.. ++.+|..-.+.+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 3445688888888888887765 333444888888888999999999999988887655 77888888888888889999
Q ss_pred HHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 109 ALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 109 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
|..=|++.+... |.+...|-.+.-+..+.+.++++...|++.+.. +|-.+..|+.....+...++++.|.+.|+....
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999888765 555666666666677888899999999988765 466788899999999999999999999988876
Q ss_pred CCCC-----CchhhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 189 VGLM-----PNVVTY-NIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 189 ~~~~-----~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
.... .+...+ +.-+-.+.-.+++..|..++++..+.. +-....|..|...-.+.|+.++|+++|++-.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5211 111111 111112224588899999999888853 2245678888888899999999999988743
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.3e-10 Score=86.39 Aligned_cols=215 Identities=15% Similarity=0.133 Sum_probs=172.2
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
.|.+.|+..+..... +...|-.+...|....+.++....|+...+.+ |.++.+|..-.+.+.-.+++++|..=|++.+
T Consensus 344 ~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667777776533 33338888899999999999999999999887 7789999999999999999999999999998
Q ss_pred hcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC-----
Q 044047 83 SKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE----- 157 (260)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 157 (260)
+..+. +...|.-+.-+..+.++++++...|++.++. .|..+..|+.....+...++++.|.+.|+..+.....
T Consensus 422 ~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 422 SLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred hcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 86433 5666666777777899999999999999887 5788899999999999999999999999988765311
Q ss_pred --cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 158 --LGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 158 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
+.+.+.-.++..- -.+++..|..++++..+...+ ....|..|...-.+.|+.++|+++|++...
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1122222222222 238999999999999987543 457899999999999999999999998764
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.39 E-value=3.1e-09 Score=85.80 Aligned_cols=236 Identities=15% Similarity=0.134 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
....-.....+...|++++|.+++.+..+.. |.+...|.+|...|-..|+.+++...+-........ |...|..+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 3444444445555699999999999999887 778999999999999999999999888666555433 67889999999
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH-------------------
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGI------------------- 160 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------- 160 (260)
..+.|.+++|.-+|.+.++.. |++...+---+..|.+.|+...|...|.++.....+.+.
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999987 677777777788888899988888888877654321111
Q ss_pred ---------------------HHHHHHHHHHHhcCCHHHHHHHHHhhhhC------------------------------
Q 044047 161 ---------------------EAYSCLIDGLCKIGKLETAWELFQSLPRV------------------------------ 189 (260)
Q Consensus 161 ---------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------ 189 (260)
..++.++..+.+...++.+..........
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 12233333333334444443333333220
Q ss_pred -------------------------------CC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 044047 190 -------------------------------GL--MPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTL 236 (260)
Q Consensus 190 -------------------------------~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 236 (260)
.. .-+...|..+..++.+.|++.+|+.+|..+......-+..+|..+
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 00 001233556667788888888888888888876444457788888
Q ss_pred HHHHHhcCchhHHHHHHHHHhh
Q 044047 237 MLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 237 ~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
..+|...|..++|.+.++....
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888999998888887754
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=4.6e-10 Score=87.64 Aligned_cols=222 Identities=20% Similarity=0.180 Sum_probs=161.2
Q ss_pred ChhHHHHHHHHHHc-----C-CCccH-HHHHHHHHHHhccCCHHHHHHHHHHHhhc-----C--CCCchhhHHHHHHHHH
Q 044047 1 MDEASRLLDLMIQR-----G-VRPNA-FVYSTLIDGFCLTGEIDRARELFVSMDIN-----G--CMHNVVTYNTLINGYC 66 (260)
Q Consensus 1 ~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~ 66 (260)
++.|..+++...+. | ..|.. ...+.+...|...+++++|..+|+++... | -+.-..+++.|...|.
T Consensus 215 ~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~ 294 (508)
T KOG1840|consen 215 LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY 294 (508)
T ss_pred HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 35667776665553 2 12333 34455888899999999999999998542 2 1223456788888999
Q ss_pred hcCChHHHHHHHHHHHhc-----CCC-CC-ccchHHHHHHHhccccHHHHHHHHHHHhhc-----C--CCcchhhHHHHH
Q 044047 67 KTKDVEESLNLYSEMLSK-----GIR-PT-VVTYNTLFHGLFEIHQVEHALKLFDEMQHS-----D--VAAETSTYNTFI 132 (260)
Q Consensus 67 ~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 132 (260)
+.|++++|...+++..+. |.. |. ...++.+...+...+++++|..+++...+. | .+.-..+++.+.
T Consensus 295 ~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLA 374 (508)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 999999998888876542 111 11 223456667788899999999998876432 1 112346889999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcC-------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh----CCCC-Cc-hhhHH
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLK-------CELGIEAYSCLIDGLCKIGKLETAWELFQSLPR----VGLM-PN-VVTYN 199 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~-~~~~~ 199 (260)
..|...|++++|.+++++++... ..-....++.+...|.+.++.++|.++|.+... .|.. |+ ..+|.
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL 454 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 99999999999999999876432 122345678889999999999999999877543 2322 23 47899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 044047 200 IMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 200 ~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
.|...|...|++++|.++.+...
T Consensus 455 nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 455 NLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 99999999999999999998876
No 64
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.38 E-value=2.1e-09 Score=84.25 Aligned_cols=246 Identities=16% Similarity=0.105 Sum_probs=125.6
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 4 ASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 4 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
|+.++.+..+.+ +.+...|-.-+..-....+++.|..+|.+.... .|+...|..-+..---.++.++|++++++..+
T Consensus 603 ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 603 ARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 444455444443 224455555555555555555555555554443 34555555444444445555555555555554
Q ss_pred cCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHH
Q 044047 84 KGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAY 163 (260)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (260)
. .+.-...|-.+.+.+-+.++.+.|...|..=.+. +|.....|..+...--+.|.+-.|..+++.....+ +.+...|
T Consensus 680 ~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lw 756 (913)
T KOG0495|consen 680 S-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLW 756 (913)
T ss_pred h-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhH
Confidence 3 1112334444455555555555555555443332 23344455555555555566666666666655544 5556666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhC----C-------------------------CCCchhhHHHHHHHHHhcCChHHH
Q 044047 164 SCLIDGLCKIGKLETAWELFQSLPRV----G-------------------------LMPNVVTYNIMIHGFCNDGQMDKA 214 (260)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~-------------------------~~~~~~~~~~l~~~~~~~g~~~~a 214 (260)
-..|++-.+.|+.+.|..++.+..+. | ..-|+.....+...+....++++|
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555444322 0 111233334444444455555666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 215 HDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 215 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
.+.|.+.++.+ +.+..+|..+...+.+.|.-++-.+++++.
T Consensus 837 r~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 837 REWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666655542 223445555555555566555555555443
No 65
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.37 E-value=4.5e-09 Score=85.65 Aligned_cols=251 Identities=14% Similarity=0.079 Sum_probs=156.8
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 4 ASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGC--MHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 4 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
+..++...-..+ +.+|...+.|..-+.-.|+++.+..+...+..... +.-...|-.+.++|...|++++|...|.+.
T Consensus 255 ~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 255 GVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 444444444433 34677777788888888888888888877765431 123445777888888888888888888777
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcC----cHHHHHHHHHHhhhcCCC
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNG----YIVEAAELFRTLRVLKCE 157 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~ 157 (260)
.+.........+.-+.+.+.+.|+.+.+...|+...+.. |.+..+...+...|...+ ..+.|..++.+..... +
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~ 411 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-P 411 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-c
Confidence 665322223344557778888888888888888887764 566667777777776664 4455666666655543 5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHhh----hhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCh
Q 044047 158 LGIEAYSCLIDGLCKIGKLETAWELFQSL----PRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK---GVAPNC 230 (260)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~ 230 (260)
.|...|-.+...+....-+.. +.++..+ ...+..+.+...|.+...+...|++++|...|...... ...++.
T Consensus 412 ~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 566666666666554433332 5554433 23343455667777777777777777777777776544 112222
Q ss_pred ------hhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 231 ------VTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 231 ------~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
.+-..+..+.-..++++.|.+.++.+.+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 1223344555556677777777666654
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.8e-10 Score=86.03 Aligned_cols=226 Identities=13% Similarity=0.083 Sum_probs=181.1
Q ss_pred HHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 044047 10 LMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT 89 (260)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 89 (260)
.|.+. .|..+.+|-++.--|..-|+..+|.+.|.+....+ +.=...|-.....++-.|.-+.|+..+...-+. ++-.
T Consensus 303 ~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~ 379 (611)
T KOG1173|consen 303 KLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGC 379 (611)
T ss_pred HHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCC
Confidence 34444 36678899999999999999999999999987665 444678999999999999999999999887664 1112
Q ss_pred ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC------CCcCHHHH
Q 044047 90 VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK------CELGIEAY 163 (260)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~ 163 (260)
...+--+..-|.+.+..+.|.+.|.+..... |.|+...+-+.-.....+.+.+|..+|+.....- ...-..++
T Consensus 380 hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~ 458 (611)
T KOG1173|consen 380 HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTL 458 (611)
T ss_pred cchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHH
Confidence 2233345556888999999999999988775 7788888888888888999999999998876211 11244568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 044047 164 SCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIR 242 (260)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 242 (260)
+.+..+|.+.+.+++|+..++....... -+..++..+.-.|...|+++.|.+.|.+.+. +.|+..+...++..+..
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999999999999999999999888743 4788999999999999999999999999887 57888777777765544
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=1.1e-08 Score=80.94 Aligned_cols=225 Identities=15% Similarity=0.102 Sum_probs=156.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcc--
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEI-- 103 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 103 (260)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+.+.++. +..-|..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 456678899999999999875544 3444566677889999999999999999999998543 444444444444111
Q ss_pred ---ccHHHHHHHHHHH----------------------------------hhcCCCcchhhHHHHHHHHHhcCcHHHHHH
Q 044047 104 ---HQVEHALKLFDEM----------------------------------QHSDVAAETSTYNTFIDGLCKNGYIVEAAE 146 (260)
Q Consensus 104 ---~~~~~a~~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (260)
...+....+|+++ ...|+| .+|+.+-..|.......-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 1344444555444 333433 255555555554444444445
Q ss_pred HHHHhhhc--------------CCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcC
Q 044047 147 LFRTLRVL--------------KCELGIE--AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDG 209 (260)
Q Consensus 147 ~~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 209 (260)
++...... .-+|+.. ++.-+...|-..|++++|+++++...+.. |+ +..|..-.+.+-..|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCC
Confidence 55444321 1134443 44566788889999999999999998864 44 678888889999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 210 QMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
++.+|.+.++........ |...-+..+..+.+.|++++|.+++.....
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 999999999999886432 556666777888999999999998876644
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=9.5e-09 Score=76.47 Aligned_cols=236 Identities=17% Similarity=0.126 Sum_probs=132.7
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHH
Q 044047 16 VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNT 95 (260)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (260)
++-|+.....+..++...|+.++|...|++....+ +-+..........+...|+.+....+...+.... +.+...|..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 45677777888888888888888888887776543 2222222222333344444444444444443321 011222222
Q ss_pred HHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC
Q 044047 96 LFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK 175 (260)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (260)
-+.......+++.|+.+-++.++.+ +.+...+-.-...+...+++++|.-.|+...... |-+...|.-++.+|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 2222223334444444444443332 2233333333344444444444444444444332 2334444444444444444
Q ss_pred HH------------------------------------HHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChHHHHHHH
Q 044047 176 LE------------------------------------TAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMDKAHDLF 218 (260)
Q Consensus 176 ~~------------------------------------~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 218 (260)
+. +|.++++.... +.|+ ....+.+...+...|..+.+..++
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 44 44444444433 2344 345667777888899999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 219 LDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 219 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
++.+.. .||....+.|.+.+...+.+++|.+.|......
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 998874 789999999999999999999999988876543
No 69
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.31 E-value=1.3e-09 Score=88.71 Aligned_cols=229 Identities=12% Similarity=0.059 Sum_probs=161.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccc
Q 044047 25 TLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIH 104 (260)
Q Consensus 25 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (260)
.+..++-..++++.|.+.|..+.+.. |.=...|..++.+....+...+|...+....... ..++..+..+...+....
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 36666677788899999998887764 3344555555544445577888888888887653 336666777777777777
Q ss_pred cHHHHHHHHHHHhhc-CCCcchhhHHHHHHHHHh------------cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHH
Q 044047 105 QVEHALKLFDEMQHS-DVAAETSTYNTFIDGLCK------------NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLC 171 (260)
Q Consensus 105 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (260)
.+..|.+-|....+. ...+|+.+...|.+.|.. .+..++|+++|.++.... |.|...-+-+.-.++
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLA 657 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhh
Confidence 777777766655432 122455555555554432 344677888888777665 556666677778888
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCchhHHH
Q 044047 172 KIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK-GVAPNCVTFNTLMLGCIRNNETSKVV 250 (260)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~ 250 (260)
..|++..|..+|.+..+... -+..+|-.+..+|...|++..|.++|+...+. ...-+..+...|.+++.+.|.+.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 88888888888888887643 24567888888888888888888888877654 33446777888888888888888888
Q ss_pred HHHHHHh
Q 044047 251 ELLHRMD 257 (260)
Q Consensus 251 ~~~~~m~ 257 (260)
+.+....
T Consensus 737 ~~ll~a~ 743 (1018)
T KOG2002|consen 737 EALLKAR 743 (1018)
T ss_pred HHHHHHH
Confidence 7766544
No 70
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.31 E-value=1.8e-08 Score=79.20 Aligned_cols=246 Identities=14% Similarity=0.065 Sum_probs=144.5
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044047 6 RLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKG 85 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 85 (260)
.+|++.... .+-....|-.....+...|++..|..++....+.+ +.+...|-..+..-.....++.|..+|.+....
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 344444443 23344445555555555666666666666665554 445566666666666666666666666665553
Q ss_pred CCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHH
Q 044047 86 IRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSC 165 (260)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (260)
.|+...|.--+..-.-.+..++|.+++++..+. .+.-...|..+.+.+-+.++.+.|...|..-.+. ++-.+..|-.
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 345555555555555556666666666666554 2334455566666666666666666666544332 3445556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----C----------------
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK----G---------------- 225 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~---------------- 225 (260)
+...--+.|.+-+|..+++...-.+.. +...|-..|+.-.+.|+.+.|..+..+.++. |
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccc
Confidence 666666677777777777776655432 5666777777777777777777666655432 1
Q ss_pred ---------CCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 226 ---------VAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 226 ---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
..-|+.+...+...+....++++|++.|.+...
T Consensus 804 Tks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 804 TKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 122444455555566666666666666666544
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=2.6e-08 Score=76.67 Aligned_cols=254 Identities=9% Similarity=0.011 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHH---HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYST---LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLY 78 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 78 (260)
++|.+++++..+.. |.+...+.. ........+..+.+.+.+.... ...+........+...+...|++++|...+
T Consensus 60 ~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 137 (355)
T cd05804 60 PKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAA 137 (355)
T ss_pred HHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45566666665543 223333331 1111122344444444444311 111222333445556667777777777777
Q ss_pred HHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCC-cch--hhHHHHHHHHHhcCcHHHHHHHHHHhhhcC
Q 044047 79 SEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVA-AET--STYNTFIDGLCKNGYIVEAAELFRTLRVLK 155 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (260)
++..+.... +...+..+...+...|++++|..++++....... ++. ..+..+...+...|++++|..++++.....
T Consensus 138 ~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 138 RRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 777775432 4556666777777777777777777776554311 221 234456667777777777777777764332
Q ss_pred C-CcCHHHH-H--HHHHHHHhcCCHHHHHHH--H-HhhhhCCC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 044047 156 C-ELGIEAY-S--CLIDGLCKIGKLETAWEL--F-QSLPRVGL-MPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVA 227 (260)
Q Consensus 156 ~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 227 (260)
. .+..... + .++..+...|....+.+. + ........ ............++...|+.+.|..++..+......
T Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 217 AESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASS 296 (355)
T ss_pred cCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 1 1111111 1 223333333433322222 1 11111100 011111224555666778888888888777653211
Q ss_pred ------C--ChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 228 ------P--NCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 228 ------p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
. ..........++...|++++|.+.+.+..+
T Consensus 297 ~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 297 ADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred cCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 111122223445577888888887776553
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.28 E-value=4.7e-10 Score=82.55 Aligned_cols=225 Identities=14% Similarity=0.103 Sum_probs=150.8
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CccchHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRP-TVVTYNTLF 97 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 97 (260)
+......+.+++...|+++.++ .++.... +|.......+...+...++-+.++.-+++....+..+ +........
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 3445566788888888877544 3443333 6777777666666655456666666665554443332 223333344
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHH----hc
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLC----KI 173 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 173 (260)
..+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.. .|. +...+..++. ..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCc
Confidence 5677789999998887652 345667778899999999999999999998653 333 3344444443 33
Q ss_pred CCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCch-hHHHHH
Q 044047 174 GKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNET-SKVVEL 252 (260)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~ 252 (260)
..+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+ +-++.+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 4689999999998765 45678888899999999999999999999987753 44677888888888888888 556677
Q ss_pred HHHHhh
Q 044047 253 LHRMDE 258 (260)
Q Consensus 253 ~~~m~~ 258 (260)
+.++.+
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 777653
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.1e-09 Score=84.38 Aligned_cols=221 Identities=13% Similarity=0.119 Sum_probs=172.3
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccH
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQV 106 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (260)
..-+.+.|++.+|.-.|+...+.+ |-+...|..|.......++-..|+..+.+..+.... +....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 445678899999999999998887 778899999999999999999999999999887444 667777888889999999
Q ss_pred HHHHHHHHHHhhcCCCcchhhHHHHH-----------HHHHhcCcHHHHHHHHHHh-hhcCCCcCHHHHHHHHHHHHhcC
Q 044047 107 EHALKLFDEMQHSDVAAETSTYNTFI-----------DGLCKNGYIVEAAELFRTL-RVLKCELGIEAYSCLIDGLCKIG 174 (260)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 174 (260)
..|+..++.-+.... +- ..+. ..+.....+....++|-++ ...+..+|+.+...|.-.|-..|
T Consensus 370 ~~Al~~L~~Wi~~~p-~y----~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKP-KY----VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCc-cc----hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 999999988765431 10 0000 1122222334444555444 34444488889999999999999
Q ss_pred CHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCchhHHHHHH
Q 044047 175 KLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN-CVTFNTLMLGCIRNNETSKVVELL 253 (260)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 253 (260)
++++|...|+.+....+ -|...||.|...++...+.++|+..|++.++. .|+ +++...|..+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999999988642 25789999999999999999999999999984 666 567778889999999999999887
Q ss_pred HHHh
Q 044047 254 HRMD 257 (260)
Q Consensus 254 ~~m~ 257 (260)
-+.+
T Consensus 522 L~AL 525 (579)
T KOG1125|consen 522 LEAL 525 (579)
T ss_pred HHHH
Confidence 6654
No 74
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=1.4e-10 Score=93.23 Aligned_cols=202 Identities=21% Similarity=0.279 Sum_probs=144.1
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcC
Q 044047 41 ELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-.....+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788899999999999999999999999998 9998888777778899999999988888887765
Q ss_pred CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh-------hcCC-----------------CcCHHHHHHHHHHHHhcCCH
Q 044047 121 VAAETSTYNTFIDGLCKNGYIVEAAELFRTLR-------VLKC-----------------ELGIEAYSCLIDGLCKIGKL 176 (260)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~-----------------~~~~~~~~~l~~~~~~~~~~ 176 (260)
.|...+|..+..+|...||...-..+-+.+. ..|+ -||.. +.+......|-+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglw 155 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLW 155 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHH
Confidence 5778899999999999998765222222121 1111 11211 122222223333
Q ss_pred HHHHHHHHhh------------------------------hhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044047 177 ETAWELFQSL------------------------------PRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGV 226 (260)
Q Consensus 177 ~~a~~~~~~~------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 226 (260)
+.+.+++..+ ....-.|+..+|..++.+-...|+.+.|..++.+|.+.|+
T Consensus 156 aqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 3333333211 1111147888888888888888999999999999998888
Q ss_pred CCChhhHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 044047 227 APNCVTFNTLMLGCIRNNETSKVVELLHRMDERN 260 (260)
Q Consensus 227 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 260 (260)
+.+..-|..|+-+ .++...+..+++-|.+.|
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~g 266 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKG 266 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhc
Confidence 8888888877755 777777777787777654
No 75
>PLN02789 farnesyltranstransferase
Probab=99.27 E-value=4.4e-08 Score=73.19 Aligned_cols=230 Identities=10% Similarity=0.026 Sum_probs=168.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCccchHHHHHHH
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTK-DVEESLNLYSEMLSKGIRPTVVTYNTLFHGL 100 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (260)
++..+-..+...+..++|+.+..++.+.+ |-+..+|+..-.++...| ++++++..++++.+...+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 44555566667889999999999998876 556677877777777777 679999999999887655 556677665556
Q ss_pred hccccH--HHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhc---CC
Q 044047 101 FEIHQV--EHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKI---GK 175 (260)
Q Consensus 101 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 175 (260)
.+.++. ++++.+++.+.+.+ +-+..+|+...-++...|+++++++.+.++++.+ +-+...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccc
Confidence 566653 67788888888876 6678889988888889999999999999999877 55666777666555544 22
Q ss_pred H----HHHHHHHHhhhhCCCCCchhhHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---
Q 044047 176 L----ETAWELFQSLPRVGLMPNVVTYNIMIHGFCND----GQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNN--- 244 (260)
Q Consensus 176 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--- 244 (260)
. ++......++..... -|...|+.+...+... ++..+|.+++.+....+ +.+......|+..|....
T Consensus 195 ~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~ 272 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPT 272 (320)
T ss_pred ccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccc
Confidence 2 456677766666543 3677888888887773 34567888888877653 346777888888887632
Q ss_pred ---------------chhHHHHHHHHHh
Q 044047 245 ---------------ETSKVVELLHRMD 257 (260)
Q Consensus 245 ---------------~~~~a~~~~~~m~ 257 (260)
..++|.+++..+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 273 AEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2356777777663
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.25 E-value=7.9e-08 Score=73.99 Aligned_cols=228 Identities=11% Similarity=0.047 Sum_probs=144.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCC-ccchHHHHHHH
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK----TKDVEESLNLYSEMLSKGIRPT-VVTYNTLFHGL 100 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 100 (260)
....+...|++++|..++++..+.. |.+...+.. ...+.. .+....+.+.+... .+..|+ ......+...+
T Consensus 49 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 49 EALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHH
Confidence 3445677899999999999988764 555555553 223333 34455555555441 112222 23334556678
Q ss_pred hccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC-CcCH--HHHHHHHHHHHhcCCHH
Q 044047 101 FEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC-ELGI--EAYSCLIDGLCKIGKLE 177 (260)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~ 177 (260)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++....... .++. ..|..+...+...|+++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 125 EEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 89999999999999998876 56677888899999999999999999998876532 1222 34557888999999999
Q ss_pred HHHHHHHhhhhCCC-CCchhhH-H--HHHHHHHhcCChHHHHHH--HHHHHhCCC--CCChhhHHHHHHHHHhcCchhHH
Q 044047 178 TAWELFQSLPRVGL-MPNVVTY-N--IMIHGFCNDGQMDKAHDL--FLDMEAKGV--APNCVTFNTLMLGCIRNNETSKV 249 (260)
Q Consensus 178 ~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~~--~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a 249 (260)
+|..+++....... .+..... + .++.-+...|....+.+. +........ ............++...|+.+.|
T Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a 283 (355)
T cd05804 204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDAL 283 (355)
T ss_pred HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHH
Confidence 99999999864332 1111111 1 233333445543333333 211111111 11112223566778889999999
Q ss_pred HHHHHHHhh
Q 044047 250 VELLHRMDE 258 (260)
Q Consensus 250 ~~~~~~m~~ 258 (260)
...++.+..
T Consensus 284 ~~~L~~l~~ 292 (355)
T cd05804 284 DKLLAALKG 292 (355)
T ss_pred HHHHHHHHH
Confidence 999988754
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=1.9e-09 Score=79.39 Aligned_cols=218 Identities=14% Similarity=0.118 Sum_probs=147.7
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccH
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQV 106 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (260)
++-+.-.|++..++.-.+ .....-+........+.+++...|+++.++ .++... ..|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccch
Confidence 445556789998886665 332321234555667789999999877544 344333 366666666666666554556
Q ss_pred HHHHHHHHHHhhcCCC-cchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044047 107 EHALKLFDEMQHSDVA-AETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQS 185 (260)
Q Consensus 107 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (260)
+.++.-+++....... .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666555433323 23333334445677789999999887643 4667778889999999999999999999
Q ss_pred hhhCCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 186 LPRVGLMPNVVTYNIMIHGFCN----DGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
|.+.. +..+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..++
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99763 33455556665543 34699999999998775 6788999999999999999999999999987654
No 78
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.2e-08 Score=77.38 Aligned_cols=244 Identities=14% Similarity=0.073 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
.+|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+.+ |-+..+.-.|.-.|...|.-..|++.+++.
T Consensus 302 ~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 302 SEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKW 379 (579)
T ss_pred hHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 46777788888776 4578999999999999999999999999999887 778889999999999999999999999998
Q ss_pred HhcCCC--------CCccchHHHHHHHhccccHHHHHHHHHHH-hhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 82 LSKGIR--------PTVVTYNTLFHGLFEIHQVEHALKLFDEM-QHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 82 ~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
.....+ ++...-.. +.+.....+....++|-++ ...+..+|+.+...|.-.|--.|++++|...|+...
T Consensus 380 i~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL 457 (579)
T KOG1125|consen 380 IRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL 457 (579)
T ss_pred HHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH
Confidence 664311 01000000 2223333445555555555 444444788899999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------
Q 044047 153 VLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK------- 224 (260)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 224 (260)
... |-|..+||-+...++...+.++|...|.++.+. +|+ +.+...|.-+|...|.+++|...|-..+.-
T Consensus 458 ~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 458 QVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred hcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence 876 668889999999999999999999999999985 566 456667778899999999999998776532
Q ss_pred --CCCCChhhHHHHHHHHHhcCchhHHHHH
Q 044047 225 --GVAPNCVTFNTLMLGCIRNNETSKVVEL 252 (260)
Q Consensus 225 --~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 252 (260)
+..++...|..|=.++.-.++.|.+.+.
T Consensus 535 ~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 535 NKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1122345777777777777777755443
No 79
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.21 E-value=4.5e-09 Score=83.22 Aligned_cols=221 Identities=14% Similarity=0.118 Sum_probs=164.0
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHH
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTL 96 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 96 (260)
+|--..-..+...+...|-...|..+|++.. .|...+.+|...|+..+|..+..+..+. +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 4444445566777888888888888887654 4777888999999999999888887773 6788888888
Q ss_pred HHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH
Q 044047 97 FHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL 176 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (260)
........-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.. +....+|.....+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88887777788888887764322 11222233344778888888888766655 56677788888888888888
Q ss_pred HHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 177 ETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
+.|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 88888888877653 2246788888888888888888888888888776 445666777777778888888888888877
Q ss_pred hh
Q 044047 257 DE 258 (260)
Q Consensus 257 ~~ 258 (260)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 54
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.19 E-value=2.5e-08 Score=72.05 Aligned_cols=186 Identities=13% Similarity=0.039 Sum_probs=120.4
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc--cch
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV---VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTV--VTY 93 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 93 (260)
.+..+..+...+...|++++|...|+.+.... |.+. .++..+..++...|++++|...++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45566777777888888888888888876653 2222 45677778888888888888888888775332111 134
Q ss_pred HHHHHHHhcc--------ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHH
Q 044047 94 NTLFHGLFEI--------HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSC 165 (260)
Q Consensus 94 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (260)
..+..++... |+.+.|.+.++.+.... |.+......+..... .... . ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 4444444443 67777888888777653 222222222211100 0000 0 011124
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCC-C-chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRVGLM-P-NVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
+...+.+.|++++|...++...+.... | ....+..+..++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667788999999999999998876321 2 3568889999999999999999999888764
No 81
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.18 E-value=1.6e-08 Score=70.73 Aligned_cols=164 Identities=13% Similarity=0.034 Sum_probs=130.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFID 133 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (260)
|... ..+-..+...|+-+....+..+..... ..+....+.+++...+.|++..|+..+++..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 666777788888888888777755432 2245566668888889999999999999988876 788999999999
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHH
Q 044047 134 GLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDK 213 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (260)
+|.+.|+++.|..-|.+..+.. +-++..++++.-.+.-.|+.+.|..++......+.. |...-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 9999999999999998888765 556778888988899999999999999888876532 66677788888889999999
Q ss_pred HHHHHHHHH
Q 044047 214 AHDLFLDME 222 (260)
Q Consensus 214 a~~~~~~~~ 222 (260)
|..+...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 988776544
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.16 E-value=4.3e-08 Score=68.36 Aligned_cols=155 Identities=11% Similarity=0.128 Sum_probs=109.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcH
Q 044047 62 INGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYI 141 (260)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 141 (260)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.+ |.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3457777777776444432221 11 0 1223566677777777777765 67788888888888888888
Q ss_pred HHHHHHHHHhhhcCCCcCHHHHHHHHHH-HHhcCC--HHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 044047 142 VEAAELFRTLRVLKCELGIEAYSCLIDG-LCKIGK--LETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLF 218 (260)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 218 (260)
++|...++...... +.+...+..+..+ +...|+ .++|.+++++..+.+.. +..++..+...+...|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888766 5577777777776 356666 48888888888887533 5677888888888888888888888
Q ss_pred HHHHhCCCCCChhh
Q 044047 219 LDMEAKGVAPNCVT 232 (260)
Q Consensus 219 ~~~~~~~~~p~~~~ 232 (260)
+++.+. .+|+..-
T Consensus 168 ~~aL~l-~~~~~~r 180 (198)
T PRK10370 168 QKVLDL-NSPRVNR 180 (198)
T ss_pred HHHHhh-CCCCccH
Confidence 888876 3444443
No 83
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=1.2e-07 Score=70.93 Aligned_cols=201 Identities=10% Similarity=0.011 Sum_probs=150.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCCh--HHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTG-EIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDV--EESLNLY 78 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~ 78 (260)
++|+.+.+.+.+.+ +-+..+|+....++...| ++++++..++.+...+ +.+..+|+.....+.+.|+. ++++.++
T Consensus 54 erAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 54 PRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 57888888888775 335667777777777777 6899999999998876 66777788776666666763 6789999
Q ss_pred HHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc---CcH----HHHHHHHHHh
Q 044047 79 SEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN---GYI----VEAAELFRTL 151 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~~~~~~ 151 (260)
+++.+...+ +..+|+....++...|++++++..++++++.+ +.+...|+.....+.+. |.. ++......++
T Consensus 132 ~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 132 RKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 999987665 78899998889999999999999999999987 56777787776666554 222 4566666666
Q ss_pred hhcCCCcCHHHHHHHHHHHHhc----CCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhc
Q 044047 152 RVLKCELGIEAYSCLIDGLCKI----GKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCND 208 (260)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (260)
+... +-+...|+.+...+... +...+|.+.+.+....++ .+......|+..|+..
T Consensus 210 I~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 210 ILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhh
Confidence 6654 56777888777777763 344668888887766542 3567788888888763
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.14 E-value=5.2e-08 Score=70.40 Aligned_cols=187 Identities=11% Similarity=-0.018 Sum_probs=129.6
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-C-CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchh---h
Q 044047 53 HNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIR-P-TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETS---T 127 (260)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 127 (260)
.....+..+...+...|+++.|...++++...... | ...++..+..++...|++++|...++++.+.. |.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 45667788888899999999999999998875322 1 12456778889999999999999999998764 22222 4
Q ss_pred HHHHHHHHHhc--------CcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHH
Q 044047 128 YNTFIDGLCKN--------GYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYN 199 (260)
Q Consensus 128 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (260)
+..+..++... |+++.|.+.++.+.... +.+...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 55555555544 67888888888887653 223323222211110 000 00 01122
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 200 IMIHGFCNDGQMDKAHDLFLDMEAKG--VAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 200 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
.+...+.+.|++++|...+++..+.. -+.....+..+..++...|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677889999999999999998752 1223578889999999999999999999988654
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.14 E-value=1.9e-07 Score=79.35 Aligned_cols=240 Identities=13% Similarity=0.067 Sum_probs=187.2
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhc-CCC---CchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 8 LDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDIN-GCM---HNVVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
|+++.... |.+...|-..|....+.++.+.|.++.++++.. ++. --...|.++++.-...|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444443 556778999999999999999999999988653 221 1245688888888888888899999999987
Q ss_pred cCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC-cCHHH
Q 044047 84 KGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE-LGIEA 162 (260)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 162 (260)
. .. .-..|..|...|.+.+..++|-++++.|.+.- .-....|...+..+.+.++-+.|..++.+....-.. -....
T Consensus 1526 y-cd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 Y-CD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred h-cc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 5 22 34678889999999999999999999998763 356788999999999999999999999988765211 23456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNC--VTFNTLMLGC 240 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~ 240 (260)
..-.+..-.+.|+.+++..+|+......++ ....|+..++.-.++|+.+.+..+|++....++.|-. ..|...+..=
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 677778888999999999999998876432 5679999999999999999999999999999887753 4455555544
Q ss_pred HhcCchhHHHHH
Q 044047 241 IRNNETSKVVEL 252 (260)
Q Consensus 241 ~~~~~~~~a~~~ 252 (260)
-..|+-..+..+
T Consensus 1682 k~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYV 1693 (1710)
T ss_pred HhcCchhhHHHH
Confidence 555665544433
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=6.1e-07 Score=71.96 Aligned_cols=253 Identities=14% Similarity=0.034 Sum_probs=178.8
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
.++++.+++..+.+ +.|+.+...+.--|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 35778888888876 33555555577778889999999999999998865788999999999999999999999999877
Q ss_pred Hhc-CCC------------------CCccchHHHHHHHhc---------cc--------------cHHHHHHHHHHH---
Q 044047 82 LSK-GIR------------------PTVVTYNTLFHGLFE---------IH--------------QVEHALKLFDEM--- 116 (260)
Q Consensus 82 ~~~-~~~------------------~~~~~~~~l~~~~~~---------~~--------------~~~~a~~~~~~~--- 116 (260)
.+. |.. ....|...++..+-. .| +..++.+....+
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 653 210 001122222222210 00 111111111111
Q ss_pred -----hhcC---------CCcc--------hhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcC
Q 044047 117 -----QHSD---------VAAE--------TSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIG 174 (260)
Q Consensus 117 -----~~~~---------~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (260)
...+ +.|. ...|......+...++.++|...+.+..... +.....|......+...|
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHH
Confidence 0000 0111 1234456667778888888888777776553 566777888888889999
Q ss_pred CHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHH--HHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 044047 175 KLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHD--LFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVEL 252 (260)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 252 (260)
.+++|.+.|.......+ -+..+..++...+.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.+.|.+.
T Consensus 699 ~~~EA~~af~~Al~ldP-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDP-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred hhHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHH
Confidence 99999999998887642 246788899999999999888888 999999875 45789999999999999999999999
Q ss_pred HHHHhh
Q 044047 253 LHRMDE 258 (260)
Q Consensus 253 ~~~m~~ 258 (260)
|....+
T Consensus 777 f~aa~q 782 (799)
T KOG4162|consen 777 FQAALQ 782 (799)
T ss_pred HHHHHh
Confidence 986543
No 87
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=8.5e-07 Score=67.60 Aligned_cols=242 Identities=12% Similarity=0.121 Sum_probs=178.6
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch--hhHHHHHHH--------HHhcCChHHHHHH
Q 044047 8 LDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV--VTYNTLING--------YCKTKDVEESLNL 77 (260)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~~~~~a~~~ 77 (260)
++.+...+ +.|-.+|--.++.-...|+.+...++|+.....- ||-. ..|...|.. =....|++.+.++
T Consensus 311 YE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 311 YEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44455544 5577888888888888999999999999998663 5532 223322221 2346789999999
Q ss_pred HHHHHhcCCCCCccchHHHHHHH----hccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 044047 78 YSEMLSKGIRPTVVTYNTLFHGL----FEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRV 153 (260)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (260)
++...+. ++....||.-+--.| .+..+...|.+++...+. .-|...+|...|..-.+.++++....+++....
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999884 555667776554444 467889999999988764 468888999999999999999999999999998
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 044047 154 LKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGL-MPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVT 232 (260)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 232 (260)
.+ |.+..+|......-...|+.+.|..+|.-+.+... ......|...|.--...|.+++|..+++++++. .+...+
T Consensus 466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kv 542 (677)
T KOG1915|consen 466 FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKV 542 (677)
T ss_pred cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchH
Confidence 87 67788898888888899999999999999987632 112345666666666899999999999999986 344456
Q ss_pred HHHHHHHHH-----hcC-----------chhHHHHHHHHHh
Q 044047 233 FNTLMLGCI-----RNN-----------ETSKVVELLHRMD 257 (260)
Q Consensus 233 ~~~l~~~~~-----~~~-----------~~~~a~~~~~~m~ 257 (260)
|.++..-=. +.+ ....|..+|++..
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 655543222 223 4556777777654
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.09 E-value=3.6e-08 Score=69.07 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=136.9
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
|... ..+-..+...|+-+....+..+..... +.+....+..+....+.|++..|+..+.+.... -++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHH
Confidence 3444 456666777788777777777654433 556677778999999999999999999999876 4568999999999
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (260)
+|.+.|+.+.|..-|.+..+.. +.++...+.+.-.+.-.|+++.|..++......+ ..+..+-..+.......|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999998875 5677888999999999999999999999988765 5577888899999999999999
Q ss_pred HHHHHHhhhh
Q 044047 179 AWELFQSLPR 188 (260)
Q Consensus 179 a~~~~~~~~~ 188 (260)
|..+...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9998765443
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.09 E-value=1.4e-08 Score=67.16 Aligned_cols=96 Identities=13% Similarity=-0.019 Sum_probs=61.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc
Q 044047 23 YSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE 102 (260)
Q Consensus 23 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (260)
+..+...+...|++++|...|+...... |.+...|..+..++...|++++|...|++....... +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4445666666667777777666666554 556666666666666677777777777666665332 55666666666666
Q ss_pred cccHHHHHHHHHHHhhcC
Q 044047 103 IHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~ 120 (260)
.|++++|...|+...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 677777776666666543
No 90
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.08 E-value=1.2e-07 Score=80.52 Aligned_cols=204 Identities=13% Similarity=0.065 Sum_probs=165.8
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchh
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRP-----TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETS 126 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 126 (260)
|.+...|-..|......++.++|.++.++.... +.+ ....|.+++..-..-|.-+...++|+++.+.. ..-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 556778999999999999999999999998764 322 23456777777777788888899999998764 2345
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-CchhhHHHHHHHH
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM-PNVVTYNIMIHGF 205 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 205 (260)
.|..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.+.++-+.|..++.++.+.-.+ -........+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999998754 467788999999999999999999999988775211 0233444555566
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 044047 206 CNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDERN 260 (260)
Q Consensus 206 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 260 (260)
.+.|+.+.+..+|+..+.. .|-....|+..++.-.++|+.+.++.+|++.++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 6899999999999999876 45567899999999999999999999999988653
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.05 E-value=2.5e-08 Score=69.57 Aligned_cols=161 Identities=12% Similarity=0.147 Sum_probs=122.8
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccH
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQV 106 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (260)
+-.|...|+++.+....+.+.. |. . .+...++.+++...+++..+.... +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3557788998887655433221 11 0 122366778888888888877544 788999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcchhhHHHHHHH-HHhcCc--HHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044047 107 EHALKLFDEMQHSDVAAETSTYNTFIDG-LCKNGY--IVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELF 183 (260)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 183 (260)
+.|...|++..+.. +.+...+..+..+ +...|+ .++|.+++++..+.+ +.++..+..+...+...|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998886 6678888888886 467777 599999999999876 667889999999999999999999999
Q ss_pred HhhhhCCCCCchhhHHHHHHH
Q 044047 184 QSLPRVGLMPNVVTYNIMIHG 204 (260)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~ 204 (260)
+.+.+.. +|+..-+ .+|..
T Consensus 168 ~~aL~l~-~~~~~r~-~~i~~ 186 (198)
T PRK10370 168 QKVLDLN-SPRVNRT-QLVES 186 (198)
T ss_pred HHHHhhC-CCCccHH-HHHHH
Confidence 9998874 3444433 33343
No 92
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=1.8e-06 Score=65.95 Aligned_cols=249 Identities=9% Similarity=0.022 Sum_probs=181.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
.+|..+|+...... ..+...|-..+.+=.+..++..|..+++.....= |.-...|-..+.+=-..|++..|.++|++-
T Consensus 90 ~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 90 QRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 56888888888766 3477788888888888899999999998887652 444456777777777789999999999998
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC--CcC
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC--ELG 159 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~ 159 (260)
.+. .|+...|.+.+..-.+-+.++.|..+|+...-. .|+..+|--....-.++|+...+..+++.....-- ..+
T Consensus 168 ~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 168 MEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 874 789999999999999999999999999998764 48888888888888899999999999987764311 123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc--hhhHHHHHHHHHhcCChHHHHHH--------HHHHHhCCCCCC
Q 044047 160 IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN--VVTYNIMIHGFCNDGQMDKAHDL--------FLDMEAKGVAPN 229 (260)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~~~~p~ 229 (260)
...+.++...-.++..++.|..+|+-..+.- +.+ ...|..+...=-+-|+.....+. ++.+++. -+-|
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~n 321 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCC
Confidence 3456666666667778888888888877652 222 23444444333344544333322 2333443 2557
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 230 CVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 230 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
..+|--.+..-...|+.+...+++++.+.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 77887788887888999999998888764
No 93
>PF12854 PPR_1: PPR repeat
Probab=99.04 E-value=3.9e-10 Score=54.11 Aligned_cols=32 Identities=50% Similarity=0.970 Sum_probs=20.5
Q ss_pred CCCccHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 044047 15 GVRPNAFVYSTLIDGFCLTGEIDRARELFVSM 46 (260)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 46 (260)
|++||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.03 E-value=6.9e-07 Score=73.54 Aligned_cols=147 Identities=10% Similarity=0.022 Sum_probs=99.2
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHH
Q 044047 51 CMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNT 130 (260)
Q Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 130 (260)
++.++..+..|.......|.+++|..+++...+..+. +......+...+.+.+++++|+..+++..... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4556667777777777777777777777777765332 44556666777777777777777777777665 555666667
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHH
Q 044047 131 FIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIM 201 (260)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (260)
+..++...|++++|..+|+++...+ +.+..++..+...+...|+.++|...|+...+.. .|....|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 7777777777777777777777633 4456677777777777777777777777776542 2333444443
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.02 E-value=8.8e-08 Score=78.64 Aligned_cols=147 Identities=11% Similarity=0.076 Sum_probs=126.7
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHH
Q 044047 16 VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNT 95 (260)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (260)
.+.++..+..|.....+.|.+++|..+++...+.. |-+......+...+.+.+++++|+..+++..+..+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 45678899999999999999999999999998875 667788899999999999999999999999987554 6777788
Q ss_pred HHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHH
Q 044047 96 LFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCL 166 (260)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (260)
+..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+...... .+....|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 8899999999999999999999854 5668899999999999999999999999987654 4444554433
No 96
>PF12854 PPR_1: PPR repeat
Probab=99.01 E-value=6.2e-10 Score=53.40 Aligned_cols=32 Identities=34% Similarity=0.636 Sum_probs=17.2
Q ss_pred CCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 225 GVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 225 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 97
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.9e-06 Score=63.66 Aligned_cols=217 Identities=12% Similarity=0.021 Sum_probs=154.9
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|+..|+.....+ +-+........-.+.+.|+.++...+...+.... ..+...|-.-+......++++.|+.+-++.
T Consensus 249 ~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 249 FQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred hHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 45677777766553 2223333333444567888888887777776543 345555666666667778888888888888
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh---------
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLR--------- 152 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------- 152 (260)
++.... +...+..-..++...+++++|.-.|+...... |-+...|.-++.+|...|.+.+|...-+...
T Consensus 327 I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~ 404 (564)
T KOG1174|consen 327 IDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARS 404 (564)
T ss_pred hccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh
Confidence 776433 45566666677778888888888888877654 5667788888888888888877665443321
Q ss_pred -----------------------hcC--CCcC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHH
Q 044047 153 -----------------------VLK--CELG-IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFC 206 (260)
Q Consensus 153 -----------------------~~~--~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (260)
+++ ..|+ ....+.+...+...|..+.+..+++..... .||....+.|...+.
T Consensus 405 LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 405 LTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR 482 (564)
T ss_pred hhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence 011 1222 334567788889999999999999988764 588899999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 044047 207 NDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 207 ~~g~~~~a~~~~~~~~~~ 224 (260)
..+.+++|.+.|...+..
T Consensus 483 A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HhhhHHHHHHHHHHHHhc
Confidence 999999999999988875
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.97 E-value=1.2e-07 Score=62.64 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLP 187 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (260)
.+..+..++...|++++|...|+...
T Consensus 60 a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 60 AHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.96 E-value=6.8e-07 Score=74.63 Aligned_cols=216 Identities=7% Similarity=0.015 Sum_probs=141.0
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-------
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT------- 89 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------- 89 (260)
+.+...+..|+..+...+++++|.++.+...+.. |-....|-.+...+...++...+..+ .+... ...+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence 3467789999999999999999999999777664 33444555555566677766666555 33222 1111
Q ss_pred ------------ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 044047 90 ------------VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE 157 (260)
Q Consensus 90 ------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (260)
...+..+..+|-+.|+.+++..+|+++.+.. +-++.+.|.+...|... ++++|.+++.+....-
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~-- 179 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF-- 179 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH--
Confidence 2455667778888899999999999998887 67788888888888888 8899988888776431
Q ss_pred cCHHHHHHHHHHH-----HhcCCHHHHHHHHHhhhhC-CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 044047 158 LGIEAYSCLIDGL-----CKIGKLETAWELFQSLPRV-GLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCV 231 (260)
Q Consensus 158 ~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 231 (260)
.+..-|+.+...+ ....+++.-..+.+.+... |..--..++-.+-..|...++++++..+++.+++.. +-|..
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~ 258 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNK 258 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-Ccchh
Confidence 1111112111111 1122333444444444333 211224455666677788888999999999998863 33666
Q ss_pred hHHHHHHHHH
Q 044047 232 TFNTLMLGCI 241 (260)
Q Consensus 232 ~~~~l~~~~~ 241 (260)
...-++.+|.
T Consensus 259 a~~~l~~~y~ 268 (906)
T PRK14720 259 AREELIRFYK 268 (906)
T ss_pred hHHHHHHHHH
Confidence 6777777776
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=8.4e-08 Score=68.70 Aligned_cols=228 Identities=14% Similarity=0.116 Sum_probs=158.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHH-HHHHHh
Q 044047 23 YSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNT-LFHGLF 101 (260)
Q Consensus 23 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 101 (260)
+.+.+..+.+..++++|++++..-.+.+ +.+......+..+|....++..|-..++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5667777788899999999998887775 558888999999999999999999999999775 344444443 345566
Q ss_pred ccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 044047 102 EIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWE 181 (260)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 181 (260)
+.+.+..|+++...|.... .........-.......+++..+..+++.....+ +..+.+.......+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 7889999999998886531 1111222222223346788888888888766433 44455555666678999999999
Q ss_pred HHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-------------Chh--------hHHHHHH--
Q 044047 182 LFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAP-------------NCV--------TFNTLML-- 238 (260)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-------------~~~--------~~~~l~~-- 238 (260)
-|+...+.+---....|+..+.. .+.|+.+.|++...++.+.|++. |.. .-+.++.
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 99988775433245667665544 56789999999999998876532 111 1123333
Q ss_pred -----HHHhcCchhHHHHHHHHHhh
Q 044047 239 -----GCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 239 -----~~~~~~~~~~a~~~~~~m~~ 258 (260)
.+.+.|+++.|.+.+-.|.-
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCC
Confidence 34577888888888777643
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=1.3e-07 Score=75.30 Aligned_cols=210 Identities=11% Similarity=0.055 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
...|.-++.+|...|+..+|..+..+..++ +|++..|..+........-+++|.++.+..... .-..+...
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~ 494 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALL 494 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccc
Confidence 345777899999999999999999887774 799999998888877777788888888765432 11222223
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETA 179 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 179 (260)
..+.++++++.+.|+.-.+.+ +....+|..+.-+..+.+++..|.+.|....... +.+...||++-.+|.+.++-.+|
T Consensus 495 ~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 495 ILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred cccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHH
Confidence 344789999999999877765 6677888889889999999999999999888764 55678899999999999999999
Q ss_pred HHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHH
Q 044047 180 WELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKG-VAPNCVTFNTLMLGCI 241 (260)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~ 241 (260)
...+.+..+.+. -+...|...+.....-|.+++|.+.+.++.... ...|..+...++....
T Consensus 573 ~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 573 FRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 999999988763 356777788888889999999999999886531 1114444444444443
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=2.6e-07 Score=60.59 Aligned_cols=98 Identities=13% Similarity=0.056 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHH
Q 044047 125 TSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHG 204 (260)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (260)
......+...+...|++++|...++.+...+ +.++..+..+...+...|++++|...++.....+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444455555666666666666666665544 4455566666666666666666666666665543 2244555556666
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 044047 205 FCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 205 ~~~~g~~~~a~~~~~~~~~~ 224 (260)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666653
No 103
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=1.9e-07 Score=61.22 Aligned_cols=96 Identities=20% Similarity=0.130 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHH
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGL 100 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (260)
.....+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...+++..+.+. .+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 334444444455555555555555544433 33444455555555555555555555554444321 1334444444444
Q ss_pred hccccHHHHHHHHHHHhh
Q 044047 101 FEIHQVEHALKLFDEMQH 118 (260)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~ 118 (260)
...|+++.|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 455555555555544444
No 104
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.89 E-value=5.3e-06 Score=65.57 Aligned_cols=229 Identities=13% Similarity=0.110 Sum_probs=159.7
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 5 SRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
+...+.+... .+-...+.....-.+...|+.++|........+.+ ..+...|+.+.-.+...+++++|++.|......
T Consensus 27 LK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 27 LKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred HHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 3444444442 33345555556666777888999998888777665 557788888888888888999999999998887
Q ss_pred CCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC-CCcCHHHH
Q 044047 85 GIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK-CELGIEAY 163 (260)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 163 (260)
+.. |...+.-+.-.-.+.++++.......++.+.. +.....|..++.++--.|++..|..+++...+.. ..|+...+
T Consensus 105 ~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 105 EKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred CCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 544 67777777777778888888888877777664 5566778888888888999999999998887654 24565554
Q ss_pred HHH------HHHHHhcCCHHHHHHHHHhhhhCCCCCchhh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 044047 164 SCL------IDGLCKIGKLETAWELFQSLPRVGLMPNVVT-YNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTL 236 (260)
Q Consensus 164 ~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 236 (260)
.-. .......|..+.|.+.+..-... + .|... -..-...+.+.+++++|..++..++.. .||..-|...
T Consensus 183 e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~ 258 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEG 258 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHH
Confidence 332 23345677778887777665443 1 23222 234456677889999999999999886 4665555544
Q ss_pred H-HHHH
Q 044047 237 M-LGCI 241 (260)
Q Consensus 237 ~-~~~~ 241 (260)
. .++.
T Consensus 259 l~~~lg 264 (700)
T KOG1156|consen 259 LEKALG 264 (700)
T ss_pred HHHHHH
Confidence 4 4443
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.4e-06 Score=61.52 Aligned_cols=148 Identities=15% Similarity=0.104 Sum_probs=107.4
Q ss_pred cchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHH
Q 044047 91 VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGL 170 (260)
Q Consensus 91 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (260)
.....-...|...+++++|++..... .+......=+..+.+..+.+-|.+.++.|.... +..+.+-+..++
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~aw 179 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAW 179 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHH
Confidence 33334445678888999998887662 122333444556677888889999999888643 555666666666
Q ss_pred Hh----cCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCch
Q 044047 171 CK----IGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNET 246 (260)
Q Consensus 171 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 246 (260)
.+ .+.+..|.-+|+++.+. ..|+..+.+-...++...|++++|..++++.+.+. .-++.+...++.+-...|..
T Consensus 180 v~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 54 45688899999998874 45788888888888899999999999999998874 44677877777777777776
Q ss_pred hHH
Q 044047 247 SKV 249 (260)
Q Consensus 247 ~~a 249 (260)
.++
T Consensus 258 ~~~ 260 (299)
T KOG3081|consen 258 AEV 260 (299)
T ss_pred hHH
Confidence 544
No 106
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.88 E-value=3.1e-06 Score=66.87 Aligned_cols=234 Identities=13% Similarity=0.077 Sum_probs=176.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHH
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGL 100 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (260)
..|..++.+| ..+++...+.+.+.+.+. .+....+.....-.+...|+-++|......-....+. +.+.|+.+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHH
Confidence 3455555544 678899999999888874 3556677776666777889999999999888776555 788999999888
Q ss_pred hccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 044047 101 FEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAW 180 (260)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 180 (260)
....++++|++.|......+ +.|...+.-+.-.-.+.++++..........+.. +-....|..++.++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998876 6777888777777778889888888777777653 445567888899999999999999
Q ss_pred HHHHhhhhCCC-CCchhhHHHHH------HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 044047 181 ELFQSLPRVGL-MPNVVTYNIMI------HGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELL 253 (260)
Q Consensus 181 ~~~~~~~~~~~-~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (260)
.+++...+... .|+...+.... ......|.+++|.+.+..-... +......-..-...+.+.++.++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99999877642 35554443322 3445688888888887765543 2222233345567788999999999999
Q ss_pred HHHhhcC
Q 044047 254 HRMDERN 260 (260)
Q Consensus 254 ~~m~~~~ 260 (260)
..++++|
T Consensus 243 ~~Ll~rn 249 (700)
T KOG1156|consen 243 RRLLERN 249 (700)
T ss_pred HHHHhhC
Confidence 9988765
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=8.7e-06 Score=70.62 Aligned_cols=257 Identities=12% Similarity=0.056 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHHcCCCcc----HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC---CC--chhhHHHHHHHHHhcCChH
Q 044047 2 DEASRLLDLMIQRGVRPN----AFVYSTLIDGFCLTGEIDRARELFVSMDINGC---MH--NVVTYNTLINGYCKTKDVE 72 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~ 72 (260)
++|...++...+.-...+ ....+.+...+...|++++|...+.+.....- .+ ...++..+...+...|+++
T Consensus 469 ~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~ 548 (903)
T PRK04841 469 EEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQ 548 (903)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHH
Confidence 456666666554211111 23445666777789999999998888754210 11 1234556677788899999
Q ss_pred HHHHHHHHHHhc----CCC--C-CccchHHHHHHHhccccHHHHHHHHHHHhhc----CCCcchhhHHHHHHHHHhcCcH
Q 044047 73 ESLNLYSEMLSK----GIR--P-TVVTYNTLFHGLFEIHQVEHALKLFDEMQHS----DVAAETSTYNTFIDGLCKNGYI 141 (260)
Q Consensus 73 ~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~ 141 (260)
.|...+++.... +.. + ....+..+...+...|++++|...+++.... +.......+..+...+...|++
T Consensus 549 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~ 628 (903)
T PRK04841 549 AAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDL 628 (903)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCH
Confidence 999988876542 211 1 1223344555667779999999888876442 1111233444566677889999
Q ss_pred HHHHHHHHHhhhcC--CCcCHH--H--HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc---hhhHHHHHHHHHhcCChH
Q 044047 142 VEAAELFRTLRVLK--CELGIE--A--YSCLIDGLCKIGKLETAWELFQSLPRVGLMPN---VVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 142 ~~a~~~~~~~~~~~--~~~~~~--~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 212 (260)
+.|...+....... ...... . ....+..+...|+.+.|...+........... ...+..+..++...|+++
T Consensus 629 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 708 (903)
T PRK04841 629 DNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFD 708 (903)
T ss_pred HHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHH
Confidence 99999888775421 111111 0 01122445568899999888877554221111 112345677788899999
Q ss_pred HHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 213 KAHDLFLDMEAK----GVAPN-CVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 213 ~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+|...+.+.... |..++ ..+...+..++...|+.++|...+.+..+
T Consensus 709 ~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 709 EAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988653 32222 34566677888999999999999988764
No 108
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=4.7e-06 Score=63.77 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=48.2
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHH
Q 044047 67 KTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAE 146 (260)
Q Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (260)
..|++++|+..+..+...-+ -|+.........+...++.++|.+.++.+.... |........+..++.+.|++.+|++
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHH
Confidence 34444445554444444311 122222333344444455555555554444432 2223334444444445555555555
Q ss_pred HHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 044047 147 LFRTLRVLKCELGIEAYSCLIDGLCKIGKLETA 179 (260)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 179 (260)
+++...... +.++..|..|.++|...|+..++
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH
Confidence 444444332 44444455555555444444443
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.85 E-value=9.8e-07 Score=73.72 Aligned_cols=199 Identities=11% Similarity=0.036 Sum_probs=134.7
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-ccchHHHHHHHhccccHHHHHHH------------------H
Q 044047 53 HNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT-VVTYNTLFHGLFEIHQVEHALKL------------------F 113 (260)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~------------------~ 113 (260)
.+...+..|+..+...+++++|.++.+...+. .|+ ...|..+...+.+.++...+..+ +
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 45778999999999999999999999977765 333 33444444455555554444333 2
Q ss_pred HHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC
Q 044047 114 DEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMP 193 (260)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 193 (260)
..+.+. .-+...+..+..+|.+.|+.+++..+++++.+.. +-++.+.|.+...|... ++++|.+++.+....-+
T Consensus 107 ~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i-- 180 (906)
T PRK14720 107 DKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI-- 180 (906)
T ss_pred HHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--
Confidence 223221 2233577788999999999999999999999988 77899999999999999 99999999988876421
Q ss_pred chhhHHHHHHHHH-----hcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 194 NVVTYNIMIHGFC-----NDGQMDKAHDLFLDMEAK-GVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 194 ~~~~~~~l~~~~~-----~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
+..-|+.+...+. ...+++.-..+.+.+... |..--..++..+-..|...++|+++..+++.+.+.
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 1112222222111 122333444444444433 32333455566668888899999999999998764
No 110
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=9.8e-06 Score=65.34 Aligned_cols=245 Identities=10% Similarity=0.055 Sum_probs=164.6
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 044047 9 DLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRP 88 (260)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 88 (260)
.++....+..++..|..+.-++...|+++.+.+.|++....- --....|+.+..++...|.-..|..+++........|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 334444456789999999999999999999999999886542 3466789999999999999999999998876654334
Q ss_pred CccchHHHH-HHH-hccccHHHHHHHHHHHhhc--C--CCcchhhHHHHHHHHHhc-----------CcHHHHHHHHHHh
Q 044047 89 TVVTYNTLF-HGL-FEIHQVEHALKLFDEMQHS--D--VAAETSTYNTFIDGLCKN-----------GYIVEAAELFRTL 151 (260)
Q Consensus 89 ~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~ 151 (260)
+..+--.++ ..| .+.+..++++.+-.+.... + -...+..+..+.-+|... ....++.+.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 433332222 333 3456677777776666541 1 012334555555555432 2245577777777
Q ss_pred hhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 044047 152 RVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCV 231 (260)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 231 (260)
.+.+ +-|+.....+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+. ...|..
T Consensus 471 v~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~ 548 (799)
T KOG4162|consen 471 VQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHV 548 (799)
T ss_pred HhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhh
Confidence 7665 44555555566667888999999999999988865668899999999999999999999999887764 122222
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 232 TFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
....-+..-..-|+.+++......+
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~ 573 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHK 573 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHH
Confidence 2212222223356666655554444
No 111
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=7.4e-07 Score=64.01 Aligned_cols=194 Identities=14% Similarity=0.170 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHH-HHHH
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNT-FIDG 134 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 134 (260)
.-+.+.+..+++..+++.|++++..-.+...+ +......+..+|....++..|-..++++.... |...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 34667777788899999999999988887443 67778888899999999999999999997753 44444443 3566
Q ss_pred HHhcCcHHHHHHHHHHhhhcCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChH
Q 044047 135 LCKNGYIVEAAELFRTLRVLKCELGIEA--YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (260)
+.+.+.+.+|+++...|... ++... ...-....-..+++..+..++++....+ +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 77889999999999887643 22221 1111222345788888999988877543 4556666666677899999
Q ss_pred HHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 044047 213 KAHDLFLDMEAK-GVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDERN 260 (260)
Q Consensus 213 ~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 260 (260)
.|.+-|+...+. |..| ...|+ +.-+..+.|+++.|++...+++++|
T Consensus 162 aAvqkFqaAlqvsGyqp-llAYn-iALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQP-LLAYN-LALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHHHHhhcCCCc-hhHHH-HHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 999999999876 4443 34454 4455668899999999999999886
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=7.2e-06 Score=62.81 Aligned_cols=121 Identities=16% Similarity=0.069 Sum_probs=98.3
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (260)
.+...|+.++|+..++.+.... |.|+.........+...++.++|.+.++.+.... +......-++..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 4557789999999999988764 6777777888889999999999999999998764 3336667778899999999999
Q ss_pred HHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 179 AWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
|..+++...... +-|+..|..|.++|...|+..++..-..+..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999887764 3478899999999998888777766555544
No 113
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.4e-05 Score=56.20 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 044047 103 IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWEL 182 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 182 (260)
.|.+++|.++++.+.+.+ |.|..++.--+...-..|+..+|++-+....+. +..|...|.-+...|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344444444444444443 333334443333334444444444444443332 234444444444444444444444444
Q ss_pred HHhhhh
Q 044047 183 FQSLPR 188 (260)
Q Consensus 183 ~~~~~~ 188 (260)
++++.-
T Consensus 177 lEE~ll 182 (289)
T KOG3060|consen 177 LEELLL 182 (289)
T ss_pred HHHHHH
Confidence 444443
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.3e-05 Score=56.80 Aligned_cols=156 Identities=16% Similarity=0.083 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh
Q 044047 58 YNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK 137 (260)
Q Consensus 58 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (260)
...-...|++.|++++|++...... +......=...+.+..+.+-|.+.+++|.+.. +..+.+.|..++.+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~ 181 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVK 181 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHH
Confidence 3344556778888888888776621 23333333445567778888888888887643 44556655555543
Q ss_pred ----cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCCh-H
Q 044047 138 ----NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQM-D 212 (260)
Q Consensus 138 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~ 212 (260)
.+...+|.-+|+++-.+ .+|++.+.+-...++...|++++|..+++........ ++.+...++-+....|.. +
T Consensus 182 la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 45677888888888764 3788888888888888888888888888888776533 455665555555555544 4
Q ss_pred HHHHHHHHHHhC
Q 044047 213 KAHDLFLDMEAK 224 (260)
Q Consensus 213 ~a~~~~~~~~~~ 224 (260)
...+.+.++...
T Consensus 260 ~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 260 VTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhc
Confidence 445555666553
No 115
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.78 E-value=1.5e-06 Score=66.48 Aligned_cols=123 Identities=18% Similarity=0.224 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc
Q 044047 59 NTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN 138 (260)
Q Consensus 59 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 138 (260)
..++..+...++++.|+.+++++.+.. | .....+++.+...++-.+|.+++++..+.. +.+......-...+...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 455566666778888888888887763 3 344557777777777788888888877654 55666666667778888
Q ss_pred CcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 044047 139 GYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLP 187 (260)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (260)
++++.|+.+.+++.... |.+..+|..|..+|.+.|+++.|+..+..+.
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888887764 5556688888888888888888888777654
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=3e-05 Score=57.12 Aligned_cols=226 Identities=8% Similarity=0.027 Sum_probs=134.7
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCC--chhh------------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccch
Q 044047 28 DGFCLTGEIDRARELFVSMDINGCMH--NVVT------------YNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTY 93 (260)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (260)
..+.+.|.+++|..=|+...+.+... .... ....+..+...|+...|+.....+.+..+- +...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHH
Confidence 34556666777776666666553111 0111 122333445556666666666666665332 55666
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHH----HHH---
Q 044047 94 NTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAY----SCL--- 166 (260)
Q Consensus 94 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l--- 166 (260)
..-..+|...|.+..|+.=++...+.. ..+..++.-+-..+...|+.+.++...++..+. .|+...+ ..+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 666666777777777766666655543 344555556666666777777777777666654 2332211 111
Q ss_pred ------HHHHHhcCCHHHHHHHHHhhhhCCCCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHH
Q 044047 167 ------IDGLCKIGKLETAWELFQSLPRVGLMPN---VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN-CVTFNTL 236 (260)
Q Consensus 167 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l 236 (260)
+......++|.++.+-.+...+...... ...+..+-.++...|++.+|++...+.++. .|+ ..++.--
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dR 347 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHH
Confidence 1222345566666666666555432211 223445556677788899999988888874 444 7777777
Q ss_pred HHHHHhcCchhHHHHHHHHHhhc
Q 044047 237 MLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 237 ~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
..+|.-...++.|+.-|+...+.
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888888888888888876653
No 117
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=2.2e-05 Score=58.07 Aligned_cols=117 Identities=12% Similarity=0.158 Sum_probs=70.6
Q ss_pred HhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhH-HHHHHHHHhcCChHHH
Q 044047 136 CKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTY-NIMIHGFCNDGQMDKA 214 (260)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a 214 (260)
.-..++++++..++.+...-...|... ..+.++++..|++.+|.++|-.+....++ |..+| ..|.++|.+.+.++.|
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 333445555555555444332223322 34677788888888888888777665444 44555 4566788888888888
Q ss_pred HHHHHHHHhCCCCCChhhH-HHHHHHHHhcCchhHHHHHHHHHh
Q 044047 215 HDLFLDMEAKGVAPNCVTF-NTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 215 ~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
++++-++.. +.+..+. ..+..-|.+.+.+--|-+.|+.+.
T Consensus 448 W~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 448 WDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 877665543 2233333 334466777777766666666554
No 118
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=3.8e-06 Score=55.77 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc--hhhHHHHH
Q 044047 128 YNTFIDGLCKNGYIVEAAELFRTLRVLKCELG---IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN--VVTYNIMI 202 (260)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 202 (260)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......|+ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 3555566655566555443 222 12223344556666666666666666666542222 12333455
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 203 HGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 203 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
..+...|++++|+..++..... ......+......+.+.|++++|+..|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5666666666666666553322 22334445556666666666666666654
No 119
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.68 E-value=8.6e-05 Score=59.17 Aligned_cols=164 Identities=13% Similarity=0.211 Sum_probs=86.5
Q ss_pred hHHHHHHHhccccHHHHHHHHHHHhhcCCCcc---hhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC------------
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDEMQHSDVAAE---TSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE------------ 157 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------ 157 (260)
|..+.+.|-..|+.+.|..+|++..+...+-- ..+|......-.+..+++.|+++.+......-.
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 45566667777777788777777765443221 344555555555666777777777665322111
Q ss_pred -----cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC----------------------------------CCch-hh
Q 044047 158 -----LGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGL----------------------------------MPNV-VT 197 (260)
Q Consensus 158 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------------------~~~~-~~ 197 (260)
-+...|+..+..--..|-++....+++.+.+..+ .|+. ..
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~di 549 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDI 549 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHH
Confidence 1223444444444455666666666665544322 1221 23
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCChhhHHHHHH--HHHhcCchhHHHHHHHHHh
Q 044047 198 YNIMIHGFCN---DGQMDKAHDLFLDMEAKGVAPNCVTFNTLML--GCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 198 ~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~ 257 (260)
|+..+..+.+ ...++.|..+|++.++ |.+|...-+..|+- .=-+.|....|+.++++.-
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4443333332 2356777777777777 45554332222221 1123466667777776643
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=5.9e-05 Score=65.60 Aligned_cols=233 Identities=11% Similarity=0.006 Sum_probs=150.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---C--CccchHHH
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHN----VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIR---P--TVVTYNTL 96 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l 96 (260)
+...+...|++++|...++...+.-...+ ....+.+...+...|++++|...+++....... + ...+...+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 34556678999999999998765311112 134456667778899999999999887653111 1 12344556
Q ss_pred HHHHhccccHHHHHHHHHHHhhc----CCC--c-chhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC--CCc--CHHHHHH
Q 044047 97 FHGLFEIHQVEHALKLFDEMQHS----DVA--A-ETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK--CEL--GIEAYSC 165 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ 165 (260)
...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+....... ..+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 67788899999999998876442 211 1 22334455666778899999999988765421 111 2334555
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCC-chhhH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hhhHHHH
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRVGLMP-NVVTY-----NIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN---CVTFNTL 236 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l 236 (260)
+...+...|+.+.|...+.......... ....+ ...+..+...|+.+.|...+........... ...+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 6778889999999999988875421111 11111 1122444568999999999877654311111 1113456
Q ss_pred HHHHHhcCchhHHHHHHHHHhh
Q 044047 237 MLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 237 ~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
..++...|++++|...+++..+
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7788899999999999988654
No 121
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=2.3e-06 Score=65.56 Aligned_cols=120 Identities=17% Similarity=0.129 Sum_probs=61.1
Q ss_pred HHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC
Q 044047 96 LFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK 175 (260)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (260)
++..+...++++.|..+++++.+.. |+ ....++..+...++..+|.+++++..... +-+...+..-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3344444555555555555555443 22 22334455555555555555555555332 3344444444555555555
Q ss_pred HHHHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 176 LETAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
.+.|..+.+++.+.. |+ ..+|..|..+|...|+++.|+..++.+.
T Consensus 250 ~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555555555532 22 3455555555555555555555555443
No 122
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1e-05 Score=66.12 Aligned_cols=210 Identities=18% Similarity=0.154 Sum_probs=110.3
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhc-C-------C-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDIN-G-------C-MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT 89 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 89 (260)
+..+|..+...|.+..+++-|.-.+-.|... | . .++ .+=....-..+..|.+++|+.+|.+-.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 4456666777777666666655544444211 0 0 111 2222222333455666777766666544
Q ss_pred ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh----------hcC----
Q 044047 90 VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLR----------VLK---- 155 (260)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~---- 155 (260)
|..|-+.|...|.|++|.++-+.--+..+ ..||.....-+-..++.+.|++.|++.. ...
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 23344556666777777666554322221 2356666666667777777777776531 110
Q ss_pred -----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 044047 156 -----CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNC 230 (260)
Q Consensus 156 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 230 (260)
...|+..|......+-..|+.+.|+.++....+ |-++++..|-.|+.++|-++-++-. |.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cH
Confidence 123555667777777778888888888776543 2334444444455555544433211 22
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 231 VTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
.....|.+.|-..|++.+|..+|-+.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33334445555555555555555443
No 123
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.65 E-value=4.7e-06 Score=55.33 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=54.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--ccchHHH
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHN---VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT--VVTYNTL 96 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 96 (260)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+........|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444443 2455555555555554432 222 12222333445555555555555555555432211 1122234
Q ss_pred HHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHH
Q 044047 97 FHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRT 150 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (260)
...+...|++++|+..++..... ......+.....++...|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44445555555555555442221 12233344444555555555555555443
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=4.4e-05 Score=53.80 Aligned_cols=185 Identities=15% Similarity=0.125 Sum_probs=137.3
Q ss_pred hhHHHHHHHHHHc---C-CCccH-HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 044047 2 DEASRLLDLMIQR---G-VRPNA-FVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLN 76 (260)
Q Consensus 2 ~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 76 (260)
++.++++..+... | ..++. ..|..++-+....|+.+.|...++.+...- |-+..+-..-...+-..|++++|++
T Consensus 29 eevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e 107 (289)
T KOG3060|consen 29 EEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIE 107 (289)
T ss_pred HHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHH
Confidence 4566666666542 3 44454 366777778888999999999999987763 4344443333444556789999999
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 044047 77 LYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC 156 (260)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (260)
+++.+.+.++ .|..++-.-+-..-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-..
T Consensus 108 ~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~- 184 (289)
T KOG3060|consen 108 YYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ- 184 (289)
T ss_pred HHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-
Confidence 9999998863 36666766666666677777888888887776 47899999999999999999999999999998764
Q ss_pred CcCHHHHHHHHHHHHhcC---CHHHHHHHHHhhhhCC
Q 044047 157 ELGIEAYSCLIDGLCKIG---KLETAWELFQSLPRVG 190 (260)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 190 (260)
|.++..+..+...+.-.| +.+.+.+.|.+..+..
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 556666666666554444 6778899999888753
No 125
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.63 E-value=1.8e-06 Score=66.48 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=66.4
Q ss_pred CCccchHHHHHHHhccccHHHHHHHHHHHhhc--CCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHH
Q 044047 88 PTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS--DVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSC 165 (260)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (260)
.+......++..+....+.+.+..++.+++.. ....-..|..++++.|...|..+.+..+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34455555555555555666666666555443 1112233445666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHH
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFC 206 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (260)
++..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 66666666666666666666555554444444444444333
No 126
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.62 E-value=0.00014 Score=58.01 Aligned_cols=201 Identities=13% Similarity=0.132 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---------
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDINGCMHN---VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRP--------- 88 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 88 (260)
..|..+...|-..|+++.|..+|++..+-..+.- ..+|.....+=.+..+++.|+++++......-.|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4678888999999999999999999887654432 5677777788888899999999998876431111
Q ss_pred --------CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH
Q 044047 89 --------TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGI 160 (260)
Q Consensus 89 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (260)
+...|...+..--..|-++....+|+.+.+..+ .++.........+-.+..++++.+++++-+..-..|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 122344455555566778888888888887764 34444445555566777888899888876655434543
Q ss_pred -HHHHHHHHHHHh---cCCHHHHHHHHHhhhhCCCCCchhhHHHH--HHHHHhcCChHHHHHHHHHHHh
Q 044047 161 -EAYSCLIDGLCK---IGKLETAWELFQSLPRVGLMPNVVTYNIM--IHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 161 -~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
..|+..+.-+.+ ...++.|..+|++..+ |.+|...-+-.| ...=.+.|-...|..++++...
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 355555444332 2368899999999888 555543222111 2222246777778888777544
No 127
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.4e-05 Score=59.00 Aligned_cols=199 Identities=13% Similarity=0.140 Sum_probs=129.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCccc-hHHH
Q 044047 25 TLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTK-------DVEESLNLYSEMLSKGIRPTVVT-YNTL 96 (260)
Q Consensus 25 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~-~~~l 96 (260)
.|+--|.+++++++|..+..++. |.++.-|..-.-..+..| ...-|.+.|+-.-+++..-|+.. -.++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 45666889999999999887765 333333322222223333 24455556655444444433332 3455
Q ss_pred HHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH
Q 044047 97 FHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL 176 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (260)
.+.+.-..++++++-++..+..-- ..|...-..+.++++..|++.+|+++|-.+....++.+..-.+.+.++|.+.+++
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc
Confidence 666667778999999888887654 3333344468899999999999999998776554443333345677899999999
Q ss_pred HHHHHHHHhhhhCCCCCchhhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 044047 177 ETAWELFQSLPRVGLMPNVVTY-NIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTF 233 (260)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 233 (260)
+.|+.++-.+... .+..+. ..+..-|-+.+++--|.+.|+.+... .|++.-|
T Consensus 445 ~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 445 QLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred hHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 9999988665542 233333 34456677888888888888888764 4554443
No 128
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.60 E-value=2.2e-06 Score=66.08 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=103.4
Q ss_pred CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhc--CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc
Q 044047 15 GVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDIN--GCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVT 92 (260)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (260)
+.+.+......+++.+....+++.+..++...... ....-..|.+++++.|.+.|..+.++.++..=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567778888889888888999999998888765 2223456677999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN 138 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 138 (260)
++.|+..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999987777677777777766666655
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.59 E-value=1.5e-07 Score=45.71 Aligned_cols=33 Identities=61% Similarity=1.075 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT 89 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 89 (260)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555444
No 130
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=3.4e-05 Score=64.51 Aligned_cols=182 Identities=10% Similarity=0.090 Sum_probs=110.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFID 133 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (260)
.+..|..+..+-.+.|...+|++-|-+. -|+..|..++....+.|.+++..+++...++....|... +.++-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 4566888888888888888777766432 266778888888888888888888887777665555433 46777
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC--------------------CCC
Q 044047 134 GLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG--------------------LMP 193 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~ 193 (260)
+|++.++..+.++++. .|+......+..-|...+.++.|.-++....... -..
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888887777665542 3444444444555555555555444443211100 001
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 194 NVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
+..+|..+-.+|...+.+.-| +|...++.....-..-++.-|...|-+++.+.+++.
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 344555555555554444332 223333334555567788888888888888877764
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.57 E-value=1.4e-07 Score=45.76 Aligned_cols=33 Identities=39% Similarity=0.943 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN 229 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 229 (260)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566667777777777777777777766666665
No 132
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=7.2e-05 Score=58.87 Aligned_cols=218 Identities=12% Similarity=0.045 Sum_probs=138.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ 105 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (260)
=++.+...|++++|.....++...+ |.+...+..-+-++++.+.+++|+.+.+.-... ..+..-+-.-.-+..+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 4667788899999999999998876 677788888888999999999999666543221 1111111122334457899
Q ss_pred HHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHH--HHHHHHHHHHhcCCHHHHHHHH
Q 044047 106 VEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIE--AYSCLIDGLCKIGKLETAWELF 183 (260)
Q Consensus 106 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 183 (260)
.++|+..++.+. +.+..+...-...+.+.|++++|..+|+.+.+.+. ++.. .-..++.+-. ...+. +.
T Consensus 95 ~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a----~l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAA----ALQVQ-LL 164 (652)
T ss_pred HHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH----hhhHH-HH
Confidence 999999988332 22334666667888999999999999999987663 3322 2222222111 11111 12
Q ss_pred HhhhhCCCCCchhhHH---HHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCh------h-hHHHHHHHHHhcCch
Q 044047 184 QSLPRVGLMPNVVTYN---IMIHGFCNDGQMDKAHDLFLDMEAK-------GVAPNC------V-TFNTLMLGCIRNNET 246 (260)
Q Consensus 184 ~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~------~-~~~~l~~~~~~~~~~ 246 (260)
+ .....| ..+|. .....+...|++.+|++++...... +-.-+. . .-..+.-++...|+.
T Consensus 165 q---~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 165 Q---SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred H---hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 2 222223 23443 3445566899999999999988221 111111 1 112345566788999
Q ss_pred hHHHHHHHHHhhcC
Q 044047 247 SKVVELLHRMDERN 260 (260)
Q Consensus 247 ~~a~~~~~~m~~~~ 260 (260)
++|.+++...+.++
T Consensus 241 ~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887653
No 133
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00014 Score=57.40 Aligned_cols=216 Identities=11% Similarity=0.118 Sum_probs=134.2
Q ss_pred ChhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 044047 1 MDEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSE 80 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 80 (260)
+++|++....+...+ +.+...+..-+-++.+.+++++|+.+.+.-... ..+...+-.=..+..+.+..++|+..++
T Consensus 28 ~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 28 YEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred HHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-
Confidence 367888888888776 567778888888999999999999666543221 1111111233456678899999999998
Q ss_pred HHhcCCCCC-ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcch-hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc
Q 044047 81 MLSKGIRPT-VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAET-STYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL 158 (260)
Q Consensus 81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (260)
|..++ ..+...-...+.+.+++++|+.+|+.+.+.+.+... ..-..++.+-. -..+. +.+...... ..
T Consensus 104 ----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~-e~ 173 (652)
T KOG2376|consen 104 ----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVP-ED 173 (652)
T ss_pred ----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCC-cc
Confidence 33333 336666677888999999999999999887643211 11112221111 11111 222222211 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC-------------CCCch-hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 159 GIEAYSCLIDGLCKIGKLETAWELFQSLPRVG-------------LMPNV-VTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
+-..+......+...|++.+|+++++...+.+ +.-.. ..-..+.-++...|+.++|..++......
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 33344455667788999999999998883221 00001 11233445666899999999999999887
Q ss_pred CCCCChh
Q 044047 225 GVAPNCV 231 (260)
Q Consensus 225 ~~~p~~~ 231 (260)
. ++|..
T Consensus 254 ~-~~D~~ 259 (652)
T KOG2376|consen 254 N-PADEP 259 (652)
T ss_pred c-CCCch
Confidence 4 44543
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.54 E-value=0.00029 Score=58.21 Aligned_cols=216 Identities=17% Similarity=0.148 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHH--HhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDG--FCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSE 80 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 80 (260)
+|+...+.+.++. |+.. |..++.+ +.+.|+.++|..+++.....+ +.|..|...+-.+|...++.++|..+|++
T Consensus 27 kal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 27 KALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4555555555542 2222 2222222 346677777776666655444 33667777777777777777777777777
Q ss_pred HHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCc----------HHHHHHHHHH
Q 044047 81 MLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGY----------IVEAAELFRT 150 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~ 150 (260)
.... .|+......+..+|.+.+.+.+-.+.=-++.+. .+-....|-++++.....-. ..-|.+.++.
T Consensus 103 ~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 103 ANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 7654 345555555666666666554433333333222 24444455555554433211 1224444444
Q ss_pred hhhcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHH-hhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044047 151 LRVLK-CELGIEAYSCLIDGLCKIGKLETAWELFQ-SLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKG 225 (260)
Q Consensus 151 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 225 (260)
+.+.+ .-.+..-.......+...|++++|+.++. ...+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 44433 11111112222333455667777777773 22222222233334455566667777777777777777664
No 135
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=7.7e-05 Score=57.98 Aligned_cols=205 Identities=13% Similarity=0.074 Sum_probs=121.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHH-------
Q 044047 23 YSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNT------- 95 (260)
Q Consensus 23 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 95 (260)
...+.+...+..+++.|++.+....... .+..-++....+|...|.+..+...-.+..+.|-. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4456666667777777777777766654 34455566666777777777666666665555433 2222332
Q ss_pred HHHHHhccccHHHHHHHHHHHhhcCCCcchhh-------------------------HHHHHHHHHhcCcHHHHHHHHHH
Q 044047 96 LFHGLFEIHQVEHALKLFDEMQHSDVAAETST-------------------------YNTFIDGLCKNGYIVEAAELFRT 150 (260)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~ 150 (260)
+..+|.+.++.+.++..|.+.......|+... ...-...+.+.|++..|.+.|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 22344555666777777766544332222111 11224445567777777777777
Q ss_pred hhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 044047 151 LRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNC 230 (260)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 230 (260)
++... |.|...|+...-+|.+.|.+..|++=.+...+.. ++....|..=..++....++++|.+.|.+.++. .|+.
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~ 459 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSN 459 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cchh
Confidence 77665 6667777777777777777777777666666652 122344444455555566777777777777664 3444
Q ss_pred hhHH
Q 044047 231 VTFN 234 (260)
Q Consensus 231 ~~~~ 234 (260)
.-+.
T Consensus 460 ~e~~ 463 (539)
T KOG0548|consen 460 AEAI 463 (539)
T ss_pred HHHH
Confidence 3333
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.53 E-value=2.4e-07 Score=44.61 Aligned_cols=31 Identities=35% Similarity=0.709 Sum_probs=14.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSKGIR 87 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 87 (260)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.53 E-value=8.3e-06 Score=52.05 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=58.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CccchHHHH
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGC--MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRP--TVVTYNTLF 97 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 97 (260)
++..++..+.+.|++++|...|+.+..... +.....+..+..++.+.|+++.|...++++....... ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445566666667777777777776655421 1113345556666777777777777777666542221 133455556
Q ss_pred HHHhccccHHHHHHHHHHHhhcC
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
.++...|+.++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666677777777777666653
No 138
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=6e-05 Score=63.13 Aligned_cols=204 Identities=11% Similarity=0.105 Sum_probs=137.6
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
.+..|..+..+-.+.|.+.+|.+-|-+. .|+..|..++....+.|.+++-.+.+...++..-.|... ..|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 4667888888888889888888766432 377889999999999999999999998877775555444 57888
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC--------------------CCc
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK--------------------CEL 158 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~ 158 (260)
+|++.++..+...++ .-|+......+..-|...+.++.|.-++....... -..
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999988766654 13555555666666666666666655554322100 012
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 044047 159 GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLML 238 (260)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 238 (260)
+..+|..+..+|...+.+.-| +|...++.....-...++..|...|.+++.+.+++..+.. -+.....|+-|..
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELai 1321 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTELAI 1321 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHHH
Confidence 334455555555444443322 2333333345566788999999999999999998876643 1345667777877
Q ss_pred HHHhc
Q 044047 239 GCIRN 243 (260)
Q Consensus 239 ~~~~~ 243 (260)
.|.+-
T Consensus 1322 LYsky 1326 (1666)
T KOG0985|consen 1322 LYSKY 1326 (1666)
T ss_pred HHHhc
Confidence 77664
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.51 E-value=2.7e-07 Score=44.45 Aligned_cols=33 Identities=36% Similarity=0.636 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 044047 196 VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAP 228 (260)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 228 (260)
.+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666665554
No 140
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00026 Score=55.20 Aligned_cols=184 Identities=17% Similarity=0.168 Sum_probs=136.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHH-------HHHhcCChHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLIN-------GYCKTKDVEES 74 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~a 74 (260)
+.|++-++...+.. -+..-++....++...|.+.+......+..+.| .-...-|+.+.. ++.+.++++.+
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 34566666666654 466677788888999999998888888777665 223334444333 45556788899
Q ss_pred HHHHHHHHhcCCCCCccch-------------------------HHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHH
Q 044047 75 LNLYSEMLSKGIRPTVVTY-------------------------NTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYN 129 (260)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 129 (260)
+..|.+.......|+...- ..-...+.+.|++..|+..|.++++.. |.|...|.
T Consensus 318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYs 396 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYS 396 (539)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHH
Confidence 9998887665444333221 112344667899999999999999987 88899999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG 190 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (260)
.-..+|.+.|.+..|++-.+...+.. ++....|.-=..++....++++|.+.|.+..+..
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999988888774 5555566666667777789999999999998864
No 141
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.49 E-value=2.6e-06 Score=52.05 Aligned_cols=79 Identities=23% Similarity=0.427 Sum_probs=53.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCC-CCchhhHHHHHHHHHhcC--------ChHHHHHHHHHHHhcCCCCCccchH
Q 044047 24 STLIDGFCLTGEIDRARELFVSMDINGC-MHNVVTYNTLINGYCKTK--------DVEESLNLYSEMLSKGIRPTVVTYN 94 (260)
Q Consensus 24 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (260)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +....+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666777777777777777777 677777877777766543 2335566777777777777777777
Q ss_pred HHHHHHhc
Q 044047 95 TLFHGLFE 102 (260)
Q Consensus 95 ~l~~~~~~ 102 (260)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77666543
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.48 E-value=1.1e-05 Score=53.07 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=53.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc
Q 044047 23 YSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE 102 (260)
Q Consensus 23 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (260)
.-.+...+...|++++|..+|+.+...+ +.+..-|-.|..++-..|++++|+..|.......+. ++..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3334444555666666666666655554 445555555666666666666666666665555432 55555556666666
Q ss_pred cccHHHHHHHHHHHhh
Q 044047 103 IHQVEHALKLFDEMQH 118 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~ 118 (260)
.|+.+.|.+.|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655443
No 143
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.47 E-value=5.7e-05 Score=63.03 Aligned_cols=217 Identities=11% Similarity=0.029 Sum_probs=148.8
Q ss_pred CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHH
Q 044047 35 EIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFD 114 (260)
Q Consensus 35 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 114 (260)
+...|...|-+..+.. +.-...|..|...|....|...|.+.|++..+.... +..........|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3566666666655554 334567888888888888889999999998876433 67778888899999999999988843
Q ss_pred HHhhcC-CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC
Q 044047 115 EMQHSD-VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMP 193 (260)
Q Consensus 115 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 193 (260)
..-+.. ...-...|....-.|...++..++...|+...... |.|...|..+..+|..+|++..|.++|.++... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 322221 00112223345556778889999999998888765 668889999999999999999999999988875 34
Q ss_pred chhhHHHH--HHHHHhcCChHHHHHHHHHHHhC------CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 194 NVVTYNIM--IHGFCNDGQMDKAHDLFLDMEAK------GVAPNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 194 ~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
+ ..|... .-..+..|.+.+|...+...... +...-..++..+...+...|-..++..++++-+
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3 233222 23345688999998888877542 112234455555555556666666666666544
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.47 E-value=5.9e-06 Score=50.12 Aligned_cols=94 Identities=21% Similarity=0.254 Sum_probs=50.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc
Q 044047 23 YSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE 102 (260)
Q Consensus 23 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (260)
+..+...+...|++++|...++...+.. +.+...+..+..++...+++++|.+.++........ +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3344555555666666666666655443 333345555555566666666666666655554322 23344555555555
Q ss_pred cccHHHHHHHHHHHhh
Q 044047 103 IHQVEHALKLFDEMQH 118 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~ 118 (260)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5555555555555443
No 145
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.45 E-value=2e-05 Score=58.33 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH-HhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG-LFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. .+.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555566666666555332 1123333333333 22234444456666555544 344555555555555
Q ss_pred HhcCcHHHHHHHHHHhhhcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 136 CKNGYIVEAAELFRTLRVLKCELG---IEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
...++.+.|..+|++.... ++++ ...|...+..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556666666666555543 1211 13555555555555555555555555554
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.43 E-value=8.1e-06 Score=49.49 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 044047 198 YNIMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 198 ~~~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
+..+...+...|++++|...+...
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333444444444444444333
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.42 E-value=3.2e-05 Score=49.31 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC--CchhhHHHHH
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKC--ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM--PNVVTYNIMI 202 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 202 (260)
++..++..+...|++++|.+.+..+..... +.....+..+..++.+.|+++.|...++.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555556666666666666666654321 111334555666666666666666666666553211 1134455556
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 044047 203 HGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 203 ~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
.++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666664
No 148
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.41 E-value=1.8e-05 Score=58.65 Aligned_cols=145 Identities=13% Similarity=0.089 Sum_probs=109.2
Q ss_pred cchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh-cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHH
Q 044047 91 VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK-NGYIVEAAELFRTLRVLKCELGIEAYSCLIDG 169 (260)
Q Consensus 91 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (260)
.+|..+++...+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468889999999999999999999998654 4455666666666334 67777799999998865 47788889999999
Q ss_pred HHhcCCHHHHHHHHHhhhhCCCCCch---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044047 170 LCKIGKLETAWELFQSLPRVGLMPNV---VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGC 240 (260)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 240 (260)
+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+.+++.+. .|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999998876 33222 48888898888999999999999999885 45545444444433
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.39 E-value=7.2e-05 Score=49.24 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHh
Q 044047 128 YNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCN 207 (260)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (260)
.-.+...+...|++++|.++|+.+.... +-+..-|..|..++-..|++++|+..|.......+ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344444555666666666666655544 34445555566666666666666666666655542 245555556666666
Q ss_pred cCChHHHHHHHHHHHhC
Q 044047 208 DGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 208 ~g~~~~a~~~~~~~~~~ 224 (260)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666655543
No 150
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.38 E-value=0.00032 Score=50.77 Aligned_cols=184 Identities=8% Similarity=-0.029 Sum_probs=113.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccch---HHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHH
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTY---NTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNT 130 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 130 (260)
+...+-.....+...|++++|.+.|+++...-+.+ .... -.+..++.+.++++.|...+++..+........-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 33334345555677899999999999998863332 2222 3456778899999999999999887642222223333
Q ss_pred HHHHHHh--cC---------------cH---HHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 044047 131 FIDGLCK--NG---------------YI---VEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG 190 (260)
Q Consensus 131 l~~~~~~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (260)
.+.+.+. .+ +. ..|+.. +..++.-|-.+.-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence 3333321 11 11 122233 333444444444455665555555432
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 191 LMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK--GVAPNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
. ...--.+.+-|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|..+.+.+.
T Consensus 174 --l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 111225667788899999999999999875 334455667788899999999999988776654
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.36 E-value=2.7e-05 Score=59.74 Aligned_cols=93 Identities=9% Similarity=0.014 Sum_probs=74.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ 105 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (260)
-...+...|++++|++.|+++.+.+ +.+...|..+..++...|++++|+..++++.+.... +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3455667888888988888888776 567778888888888888999998888888876433 56677788888888889
Q ss_pred HHHHHHHHHHHhhcC
Q 044047 106 VEHALKLFDEMQHSD 120 (260)
Q Consensus 106 ~~~a~~~~~~~~~~~ 120 (260)
+++|...|++..+.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 988988888887764
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.36 E-value=1.3e-05 Score=49.06 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhCCC-CCchhhHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCChhhHHH
Q 044047 165 CLIDGLCKIGKLETAWELFQSLPRVGL-MPNVVTYNIMIHGFCNDG--------QMDKAHDLFLDMEAKGVAPNCVTFNT 235 (260)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~ 235 (260)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..++.|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777777766432 24456778888888888888888888
Q ss_pred HHHHHHh
Q 044047 236 LMLGCIR 242 (260)
Q Consensus 236 l~~~~~~ 242 (260)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8877654
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.35 E-value=4.3e-05 Score=58.67 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=64.9
Q ss_pred HHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH
Q 044047 97 FHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL 176 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (260)
...+...|+++.|+..|++..+.. +.+...+..+..+|...|++++|+..++.+.... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777777665 4566667777777777777777777777777654 44566677777777777777
Q ss_pred HHHHHHHHhhhhCC
Q 044047 177 ETAWELFQSLPRVG 190 (260)
Q Consensus 177 ~~a~~~~~~~~~~~ 190 (260)
++|...|+......
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777653
No 154
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.35 E-value=2e-05 Score=53.71 Aligned_cols=81 Identities=14% Similarity=0.007 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRP--TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFI 132 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (260)
...|..+...+...|++++|+..+++.......+ ...++..+...+...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4445555566666666666666666665442221 12355556666666666666666666655442 23333444444
Q ss_pred HHHH
Q 044047 133 DGLC 136 (260)
Q Consensus 133 ~~~~ 136 (260)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.34 E-value=0.00042 Score=50.18 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=115.2
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhH---HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTY---NTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNT 95 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (260)
++..+-.....+.+.|++++|.+.|+.+.... |-+...- -.++.++.+.+++++|...+++..+..+......+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34444445666778999999999999998764 3233332 4567888999999999999999998754433444444
Q ss_pred HHHHHhc--cc---------------c---HHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC
Q 044047 96 LFHGLFE--IH---------------Q---VEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK 155 (260)
Q Consensus 96 l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (260)
.+.+.+. .+ + ...|+..|+.+.+. |-...-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence 4444331 11 1 12344444444443 33333344454444433321
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC--CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 156 CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG--LMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
.-..- -.+...|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|..+...+..
T Consensus 174 --la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 --LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred --HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 11111 246677888888888888888877652 122345677788888889999988887766543
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.33 E-value=1.5e-06 Score=51.77 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHHHhhcCCC-cchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 044047 104 HQVEHALKLFDEMQHSDVA-AETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWEL 182 (260)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 182 (260)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. ...+ +.+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444443211 1222333344444444555444444444 1111 11122222334444444555554444
Q ss_pred HH
Q 044047 183 FQ 184 (260)
Q Consensus 183 ~~ 184 (260)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.33 E-value=6.5e-05 Score=51.45 Aligned_cols=88 Identities=16% Similarity=0.084 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT--VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFI 132 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (260)
...+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34455666666666777777777776665432221 2455666666667777777777776666543 33445555555
Q ss_pred HHHHhcCcHHH
Q 044047 133 DGLCKNGYIVE 143 (260)
Q Consensus 133 ~~~~~~~~~~~ 143 (260)
.++...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 66665555443
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.33 E-value=3.5e-06 Score=50.14 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=43.5
Q ss_pred cCcHHHHHHHHHHhhhcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHH
Q 044047 138 NGYIVEAAELFRTLRVLKCE-LGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHD 216 (260)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 216 (260)
.|+++.|+.+++++...... ++...+..+..++.+.|++++|..+++. .+.+. .+......+..++.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666655421 1333444466666666666666666666 22211 122333344666666666666666
Q ss_pred HHHH
Q 044047 217 LFLD 220 (260)
Q Consensus 217 ~~~~ 220 (260)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 159
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.31 E-value=0.00034 Score=54.79 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CccchHHHHHHHhccccHHHHHHHHH
Q 044047 36 IDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRP-TVVTYNTLFHGLFEIHQVEHALKLFD 114 (260)
Q Consensus 36 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 114 (260)
.+.....++++...-...-.-+|..+++.-.+..-+..|..+|.++.+.+..+ ++.+.++++..++. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44444555555443222233455666666666666666666666666665544 44555555555543 55566666666
Q ss_pred HHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 044047 115 EMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELG--IEAYSCLIDGLCKIGKLETAWELFQSLP 187 (260)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (260)
-=.+. ...++.-....+..+...++-..+..+|++....+.+++ ...|..++..-..-|+...+.++-+++.
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 53332 123344445556666666666666666666666543333 3466666666666666666666655543
No 160
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.30 E-value=0.0014 Score=54.44 Aligned_cols=223 Identities=12% Similarity=0.071 Sum_probs=146.6
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCchhhHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHH
Q 044047 31 CLTGEIDRARELFVSMDINGCMHNVVTYNTLIN--GYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEH 108 (260)
Q Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 108 (260)
...+++..|..-..++.+.. |+.. |..++. ...+.|+.++|..+++.....+.. |..|...+-..|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 36678999999998887763 3332 233333 356789999999999888776555 88899999999999999999
Q ss_pred HHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcC----------CHHH
Q 044047 109 ALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIG----------KLET 178 (260)
Q Consensus 109 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~ 178 (260)
|..+|++..... |+......+..+|.+.+.+.+-.+.--++-+ ..+-.+..+=++++.+.+.- -..-
T Consensus 96 ~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999998764 5577777888888888887764433322222 22334444434444443321 1234
Q ss_pred HHHHHHhhhhCC-CCCchhhHHHHHHHHHhcCChHHHHHHHH-HHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 179 AWELFQSLPRVG-LMPNVVTYNIMIHGFCNDGQMDKAHDLFL-DMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 179 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
|.+.++.+.+.+ ..-+..-...-...+...|.+++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 677777776654 22222333333445567889999999994 4444323334444445667777788888888777777
Q ss_pred hhcC
Q 044047 257 DERN 260 (260)
Q Consensus 257 ~~~~ 260 (260)
.++|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 6654
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.29 E-value=0.00015 Score=58.34 Aligned_cols=143 Identities=12% Similarity=0.089 Sum_probs=96.9
Q ss_pred CCCCccchHHHHHHHhcc-----ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc--------CcHHHHHHHHHHhh
Q 044047 86 IRPTVVTYNTLFHGLFEI-----HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN--------GYIVEAAELFRTLR 152 (260)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 152 (260)
.+.+...|...+++.... +..+.|..+|++..+.. |.....+..+..++... .+...+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 445667788877775432 23668888898888875 44445555444433221 12233344444333
Q ss_pred hc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 044047 153 VL-KCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCV 231 (260)
Q Consensus 153 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 231 (260)
.. ..+.++..|..+.......|++++|...++++.... |+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 124456778777777777899999999999998865 67888999999999999999999999988874 55555
Q ss_pred hH
Q 044047 232 TF 233 (260)
Q Consensus 232 ~~ 233 (260)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 54
No 162
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.29 E-value=0.001 Score=52.30 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCc-chhhHHHHHHHHHhcCcHHHHHHHHH
Q 044047 71 VEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAA-ETSTYNTFIDGLCKNGYIVEAAELFR 149 (260)
Q Consensus 71 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (260)
.+.....++++...-..--+.+|..+++...+..-++.|..+|.++.+.+..+ +..+.++++..+| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566677776654333345678888888889999999999999998887666 6667777777665 577889999998
Q ss_pred HhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 150 TLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN--VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
.-...- ..++.-....+..+...++-..+..+|++....++.|+ ...|..++..=..-|+...+.++-+++...
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 766542 45566667788888899999999999999988866655 468999999888999999998888877643
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.27 E-value=1.1e-06 Score=41.21 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 044047 232 TFNTLMLGCIRNNETSKVVELLHRMDERN 260 (260)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 260 (260)
+|+.++++|.+.|++++|.+++++|.++|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555543
No 164
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.27 E-value=0.00017 Score=60.35 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCccchHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKG-IRPTVVTYNTLFH 98 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 98 (260)
...|..|...|....+...|...|+...+.+ +.+...+......|+...+++.|..+.-..-+.. ...-...|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4578889999988888999999999988776 6678889999999999999999998843322221 1111233444555
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (260)
.|...++...++.-|+...+.. |.|...|..+..+|.++|.+..|.++|.+..... |.+...-.-.....+..|.+.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHH
Confidence 6778889999999999988876 6788899999999999999999999998887653 2232222223344567888999
Q ss_pred HHHHHHhhhh
Q 044047 179 AWELFQSLPR 188 (260)
Q Consensus 179 a~~~~~~~~~ 188 (260)
|...+.....
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 8888877653
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.27 E-value=0.00038 Score=51.80 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhh----cCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC-CCc
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDI----NGCM-HNVVTYNTLINGYCKTKDVEESLNLYSEMLSK----GIR-PTV 90 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 90 (260)
..|......|...|++++|.+.|..... .+-+ .-...|.....+|.+. ++++|+..+++..+. |-. .-.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4566667777777888888777776632 1211 1123344544554444 777777777766542 211 012
Q ss_pred cchHHHHHHHhcc-ccHHHHHHHHHHHhhc----CCC-cchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC-----CcC
Q 044047 91 VTYNTLFHGLFEI-HQVEHALKLFDEMQHS----DVA-AETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC-----ELG 159 (260)
Q Consensus 91 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~ 159 (260)
..+..+...|... |+++.|++.|++..+. +.+ .-...+..+...+.+.|++++|.++|+++..... ..+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 3455566666666 7777777777765332 211 1123455566667777777777777776654321 111
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 160 IE-AYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 160 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
.. .+...+-++...|+...|...+++....
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 21 2233344555667777777777766544
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.26 E-value=0.00023 Score=48.80 Aligned_cols=85 Identities=14% Similarity=-0.005 Sum_probs=41.1
Q ss_pred chHHHHHHHhccccHHHHHHHHHHHhhcCCCc--chhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHH
Q 044047 92 TYNTLFHGLFEIHQVEHALKLFDEMQHSDVAA--ETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDG 169 (260)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (260)
.+..+...+...|++++|...|++..+....+ ....+..+..++...|++++|...+++..... +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34444555555566666666665554432111 12344555555555555555555555555432 2234444444445
Q ss_pred HHhcCCHH
Q 044047 170 LCKIGKLE 177 (260)
Q Consensus 170 ~~~~~~~~ 177 (260)
+...|+..
T Consensus 116 ~~~~g~~~ 123 (172)
T PRK02603 116 YHKRGEKA 123 (172)
T ss_pred HHHcCChH
Confidence 54444433
No 167
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.26 E-value=0.00018 Score=58.67 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=36.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcH
Q 044047 62 INGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYI 141 (260)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 141 (260)
+.+....+.|.+|+.+++.+..+.. -..-|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3444444555555555555544321 2233444445555555555555554331 1233444555555555
Q ss_pred HHHHHHHHH
Q 044047 142 VEAAELFRT 150 (260)
Q Consensus 142 ~~a~~~~~~ 150 (260)
.+|.++-.+
T Consensus 808 ~da~kla~e 816 (1636)
T KOG3616|consen 808 EDAFKLAEE 816 (1636)
T ss_pred HHHHHHHHH
Confidence 555554443
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.25 E-value=4.7e-05 Score=51.94 Aligned_cols=108 Identities=14% Similarity=-0.002 Sum_probs=74.1
Q ss_pred HHHHHHHH-HcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 5 SRLLDLMI-QRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMH--NVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
.+.+..+. ..+..-....|..+...+...|++++|...|+........+ ...+|..+..++...|++++|+..+++.
T Consensus 19 ~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 19 ADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444443 23323346677888888999999999999999997653222 2458889999999999999999999999
Q ss_pred HhcCCCCCccchHHHHHHHh-------ccccHHHHHHHH
Q 044047 82 LSKGIRPTVVTYNTLFHGLF-------EIHQVEHALKLF 113 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~ 113 (260)
...... ...++..+...+. ..|+++.|...+
T Consensus 99 l~~~~~-~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 99 LERNPF-LPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHhCcC-cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 876322 3445555665665 445555444333
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.23 E-value=2.2e-06 Score=40.14 Aligned_cols=26 Identities=50% Similarity=0.985 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 58 YNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 58 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33333333333333333333333333
No 170
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.00014 Score=59.80 Aligned_cols=209 Identities=14% Similarity=0.119 Sum_probs=143.3
Q ss_pred cHHHHHHHHH--HHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc-C--------CC
Q 044047 19 NAFVYSTLID--GFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK-G--------IR 87 (260)
Q Consensus 19 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 87 (260)
|..|-..+++ .|..-|+.+.|.+-.+.+. +...|..|.++|.+..+.+-|.-.+-.|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4555555554 4677899999988877665 4568999999999999988887777666432 1 11
Q ss_pred CCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHH
Q 044047 88 PTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLI 167 (260)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 167 (260)
|+ .+-....-.....|..++|..+|.+.++. ..+=..|...|.+++|.++-+.--... =..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 22 22233334456789999999999997653 355567788999999998876432221 234677777
Q ss_pred HHHHhcCCHHHHHHHHHhhhhC----------C---------CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 044047 168 DGLCKIGKLETAWELFQSLPRV----------G---------LMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAP 228 (260)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 228 (260)
..+-..++.+.|++.|++.... . -..|...|..-...+...|+.+.|+.+|....+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 7777888888888888764211 0 012445566666677788899999988887664
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 229 NCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 229 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
|-++++..+-.|+.++|-++-++
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHh
Confidence 44566667777888887777654
No 171
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.14 E-value=0.00017 Score=49.95 Aligned_cols=103 Identities=24% Similarity=0.281 Sum_probs=56.0
Q ss_pred CcchhhHHHHHHHHHh-----cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchh
Q 044047 122 AAETSTYNTFIDGLCK-----NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVV 196 (260)
Q Consensus 122 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 196 (260)
..+-.+|..++..|.+ .|.++=....++.|.+.|+.-|..+|+.|+..+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 3456677777777654 35666666667777777777777777777766543 2110 00 0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRN 243 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 243 (260)
.+..+... ...+-+-|++++++|...|+-||..++..+++.+.+.
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 00000000 1123344666666666666666666666666665433
No 172
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.13 E-value=2.2e-05 Score=44.68 Aligned_cols=65 Identities=25% Similarity=0.240 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC-ChHHHHHHHHHHHhc
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTK-DVEESLNLYSEMLSK 84 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 84 (260)
++..|..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45677777888888888888888888877765 556777778888888887 688888888777653
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=0.00039 Score=55.96 Aligned_cols=142 Identities=12% Similarity=0.035 Sum_probs=83.6
Q ss_pred CCchhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcc--------ccHHHHHHHHHHHhh
Q 044047 52 MHNVVTYNTLINGYCKTK-----DVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEI--------HQVEHALKLFDEMQH 118 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 118 (260)
+.+...|...+++..... +...|..+|++..+..+. ....|..+..++... .+...+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455566666665543321 255666666666665222 223333322222111 123344444444333
Q ss_pred c-CCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhh
Q 044047 119 S-DVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVT 197 (260)
Q Consensus 119 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (260)
. ..+.+...+..+.......|++++|...+++..... |+...|..+...+...|+.++|.+.+++..... |...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCch
Confidence 2 123455667766666667788888888888888765 477788888888888888888888888877754 44444
Q ss_pred H
Q 044047 198 Y 198 (260)
Q Consensus 198 ~ 198 (260)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 3
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00052 Score=49.93 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=85.9
Q ss_pred hhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHhhhhCCCCC
Q 044047 117 QHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIG---KLETAWELFQSLPRVGLMP 193 (260)
Q Consensus 117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~ 193 (260)
...+ |.|...|..|...|...|+.+.|..-|....+.. ++++..+..+..++.... ...++..+|+++..... -
T Consensus 149 L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~ 225 (287)
T COG4235 149 LQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-A 225 (287)
T ss_pred HHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-c
Confidence 3444 7788899999999999999999999999988775 677887777777665443 35688999999988753 3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 194 NVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
|..+...|...+...|++.+|...|+.|.+.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6778888889999999999999999999986
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=0.0011 Score=49.35 Aligned_cols=196 Identities=13% Similarity=0.140 Sum_probs=114.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----CCccchHHHHHHHhccccHHH
Q 044047 34 GEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIR-----PTVVTYNTLFHGLFEIHQVEH 108 (260)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~ 108 (260)
.++++|.++|.+. ...|-..|++++|...|.+..+.... .-...|......|.+. ++++
T Consensus 29 ~~~e~Aa~~y~~A---------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~ 92 (282)
T PF14938_consen 29 PDYEEAADLYEKA---------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDE 92 (282)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHH
T ss_pred CCHHHHHHHHHHH---------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHH
Confidence 3666666666554 34455556666666666555332110 0122333344444333 7777
Q ss_pred HHHHHHHHh----hcCCCcc--hhhHHHHHHHHHhc-CcHHHHHHHHHHhhhc----CCC-cCHHHHHHHHHHHHhcCCH
Q 044047 109 ALKLFDEMQ----HSDVAAE--TSTYNTFIDGLCKN-GYIVEAAELFRTLRVL----KCE-LGIEAYSCLIDGLCKIGKL 176 (260)
Q Consensus 109 a~~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 176 (260)
|+..+++.. +.| .++ ...+..+...|... |+++.|.+.|++.... +.+ .-...+..+...+.+.|++
T Consensus 93 Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 93 AIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 777777654 334 222 34666777888888 8999999999887542 211 1134567788899999999
Q ss_pred HHHHHHHHhhhhCCCC-----Cchh-hHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC--hhhHHHHHHHHHhcCch
Q 044047 177 ETAWELFQSLPRVGLM-----PNVV-TYNIMIHGFCNDGQMDKAHDLFLDMEAK--GVAPN--CVTFNTLMLGCIRNNET 246 (260)
Q Consensus 177 ~~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~ 246 (260)
++|.++|++....... ++.. .+-..+-++...|++..|...+++.... ++..+ ......|+.++- .||.
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~ 250 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDV 250 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-C
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCH
Confidence 9999999988764322 2222 2333444666789999999999998764 23222 344556666664 4444
Q ss_pred h
Q 044047 247 S 247 (260)
Q Consensus 247 ~ 247 (260)
+
T Consensus 251 e 251 (282)
T PF14938_consen 251 E 251 (282)
T ss_dssp C
T ss_pred H
Confidence 3
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=9.7e-05 Score=53.42 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=40.1
Q ss_pred ccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 044047 102 EIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWE 181 (260)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 181 (260)
+.+++++|+..|.+.++.. |-|...|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|.+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3444555555555544443 3344444444455555555555554444444332 2233445555555555555555555
Q ss_pred HHHhhhh
Q 044047 182 LFQSLPR 188 (260)
Q Consensus 182 ~~~~~~~ 188 (260)
.|++..+
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 5444444
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.10 E-value=1.1e-05 Score=45.80 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=33.5
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 32 LTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
+.|++++|.++|+.+.... |.+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566677777777666554 446666666667777777777777777666654
No 178
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.10 E-value=8e-05 Score=51.50 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=55.9
Q ss_pred CCchhhHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcc----------------ccHHHHH
Q 044047 52 MHNVVTYNTLINGYCKT-----KDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEI----------------HQVEHAL 110 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 110 (260)
..+..+|..++..+.+. |..+-....+..|.+-|+.-|..+|+.|+..+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34555666666655443 55566666666666667766777777776655431 2345567
Q ss_pred HHHHHHhhcCCCcchhhHHHHHHHHHhcCc
Q 044047 111 KLFDEMQHSDVAAETSTYNTFIDGLCKNGY 140 (260)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 140 (260)
+++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 777777777777777777777777766554
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.00014 Score=52.64 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=87.1
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCCh
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQM 211 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 211 (260)
.-+.+.+++.+|+..|.+.+... +-|...|..-..+|.+.|.++.|++-.+...... |. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcH
Confidence 44567899999999999999876 6788888999999999999999999888888753 44 57899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044047 212 DKAHDLFLDMEAKGVAPNCVTFNTLMLGC 240 (260)
Q Consensus 212 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 240 (260)
++|.+.|++.++ +.|+-.+|..=+...
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 999999999988 578877776555443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.05 E-value=0.00088 Score=42.51 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHHHhhh
Q 044047 167 IDGLCKIGKLETAWELFQSLP 187 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~ 187 (260)
...+...|++++|..+++...
T Consensus 45 astlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 45 ASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444333
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.04 E-value=4.4e-05 Score=42.86 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=43.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
+...+.+.|++++|.+.|+.+.+.. |-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556777788888888888887765 557777778888888888888888888877664
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.03 E-value=7.1e-05 Score=42.39 Aligned_cols=51 Identities=27% Similarity=0.188 Sum_probs=24.5
Q ss_pred cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 138 NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
.|++++|++.|+.+.... +.+...+..+..+|.+.|++++|..+++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555544433 334444444555555555555555555554443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.02 E-value=0.00073 Score=42.88 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=8.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 044047 61 LINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 61 l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
+...+...|++++|+.++++..
T Consensus 44 lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 44 LASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333344444444444444333
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.00061 Score=48.65 Aligned_cols=131 Identities=14% Similarity=0.086 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHH-----H
Q 044047 58 YNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTF-----I 132 (260)
Q Consensus 58 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~ 132 (260)
-+.++.++...|.+.-....+.+.++...+.++.....|++.-.+.|+.+.|...|+...+..-..+..+++.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34556666666777777777887777665556777777777777888888888888866554334444343333 3
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
..|.-.+++..|...+.++...+ +-++...|.-.-+..-.|+...|.+.++.+...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555667777777777776655 445555555555555677788888888877765
No 185
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.97 E-value=0.0018 Score=53.13 Aligned_cols=192 Identities=17% Similarity=0.148 Sum_probs=118.5
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHH
Q 044047 29 GFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEH 108 (260)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 108 (260)
+.....+|.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+. ..++-.+..|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3344556666666666665542 23344666677777788888887777542 234456677788888888
Q ss_pred HHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 109 ALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 109 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
|.++-++... .......|-.-..-+-..|++.+|.+++-.+. .|+. .|.+|-+.|..+..+++..+-..
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 7777665532 23344455555555667777777777664433 3332 45677777777777776665432
Q ss_pred CCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 044047 189 VGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLH 254 (260)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 254 (260)
.. -..|...+..-+...|+...|..-|-+..+ |.+-+..|..++.|++|.++-+
T Consensus 879 d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 879 DH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh
Confidence 21 134555666777777888877776654433 4455666777777777766644
No 186
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.96 E-value=0.0019 Score=45.56 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=38.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcC--CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 23 YSTLIDGFCLTGEIDRARELFVSMDING--CMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 23 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
+-.....+...|++.+|...|+.+...- -+-.....-.++.++.+.|+++.|...++++.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3345556667777888888887776542 1223344556667777777777777777777665
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0017 Score=47.31 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=91.0
Q ss_pred CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcC---cHHHHHHHHHHhhhcCCCcCHHHHHH
Q 044047 89 TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNG---YIVEAAELFRTLRVLKCELGIEAYSC 165 (260)
Q Consensus 89 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (260)
|...|..|...|...|+.+.|..-|.+..+.. ++++..+..+..++.... ...++..+|+++...+ +.++.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 78899999999999999999999999998875 677778877777765443 3457899999999876 778888899
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHH
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIH 203 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (260)
+...+...|++.+|...|+.|.+.. |....+..++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 9999999999999999999999874 33344445544
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.93 E-value=8e-05 Score=41.76 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
+...+...|++++|...|+.+.+... -+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556667777777777777766542 24566666677777777777777777776653
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.91 E-value=9.2e-05 Score=42.07 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-chhHHHHHHHHHh
Q 044047 196 VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNN-ETSKVVELLHRMD 257 (260)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~ 257 (260)
.+|..+...+...|++++|+..|++..+.. +.+...+..+..++...| ++++|++.+++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444555555555555444431 223444444444444444 4455554444443
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.90 E-value=0.0034 Score=44.27 Aligned_cols=183 Identities=13% Similarity=0.061 Sum_probs=106.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSKGIR--PTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
.+-.....+...|++.+|...|+++...-+. --....-.++.++.+.|+++.|...++++.+.-......-+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3344455677889999999999999876322 12344556778888999999999999998876411111222222222
Q ss_pred HHhcCcHHHHHHHHHHhhhcCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCCh
Q 044047 135 LCKNGYIVEAAELFRTLRVLKC---ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQM 211 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (260)
.+......... ....+. ..-...+..++.-|-.+....+|...+..+.+. =...--.+.+.|.+.|.+
T Consensus 87 ~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 87 LSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-H
T ss_pred HHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccH
Confidence 22211111110 000000 001234556666666777777777777666542 112223467788999999
Q ss_pred HHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCchhHHH
Q 044047 212 DKAHDLFLDMEAKGVAPN----CVTFNTLMLGCIRNNETSKVV 250 (260)
Q Consensus 212 ~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~ 250 (260)
..|..-++.+++. -|+ ......++.++.+.|..+.+.
T Consensus 158 ~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 158 KAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999876 233 345577889999999887544
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0046 Score=47.14 Aligned_cols=249 Identities=12% Similarity=-0.039 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
+|+..+....+.. +.++.-|..-+..+...|++++|.--.++..+.. +-........-+++...++..+|.+.++.-.
T Consensus 67 nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~ 144 (486)
T KOG0550|consen 67 NALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAEEKLKSKQ 144 (486)
T ss_pred HHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHHHHhhhhh
Confidence 4555566666554 3345555555666666667776665555444332 1122233333344444444444443333211
Q ss_pred ---------------hcCC-CCCccchHHH-HHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHH
Q 044047 83 ---------------SKGI-RPTVVTYNTL-FHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAA 145 (260)
Q Consensus 83 ---------------~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (260)
.... +|...++..+ ..++.-.++.++|.+.--...+.. +.+......=..++.-.++.+.+.
T Consensus 145 ~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~ 223 (486)
T KOG0550|consen 145 AYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAI 223 (486)
T ss_pred hhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHH
Confidence 1100 1111222221 133445667777766655554443 222222222223344566777777
Q ss_pred HHHHHhhhcCCCcCHH-------------HHHHHHHHHHhcCCHHHHHHHHHhhhhCC---CCCchhhHHHHHHHHHhcC
Q 044047 146 ELFRTLRVLKCELGIE-------------AYSCLIDGLCKIGKLETAWELFQSLPRVG---LMPNVVTYNIMIHGFCNDG 209 (260)
Q Consensus 146 ~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g 209 (260)
..|++.+..+ |+.. .+..-.+-..+.|++..|.+.+.+..... ..|+...|.....+..+.|
T Consensus 224 ~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg 301 (486)
T KOG0550|consen 224 NHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG 301 (486)
T ss_pred HHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC
Confidence 7777766543 2221 11122233457788888888888877643 3355666777777777888
Q ss_pred ChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 210 QMDKAHDLFLDMEAKGVAPN-CVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+..+|+.--++..+. .|. ...+..-..++...++|++|.+-+++..+
T Consensus 302 rl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 302 RLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred Cchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888887777663 211 12223333566667888888877776543
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0012 Score=47.28 Aligned_cols=133 Identities=10% Similarity=0.011 Sum_probs=104.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH----
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF---- 97 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 97 (260)
+.+.++.++.-.|.+.-....+.+..+.+-+.++.....+++.-.+.||.+.|...|++..+..-+.+..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3356677777788999999999999887767788888999999999999999999999876654444555555443
Q ss_pred -HHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC
Q 044047 98 -HGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK 155 (260)
Q Consensus 98 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (260)
..+.-.+++..|...+.++...+ +.++...|.-.-+..-.|+..+|.+.++.+....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34556778888999998888776 5566666766666677899999999999998763
No 193
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.88 E-value=0.0053 Score=45.80 Aligned_cols=206 Identities=11% Similarity=0.051 Sum_probs=144.3
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchH-HH
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYN-TL 96 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l 96 (260)
.++.-..-+...+...|++..|+.-|....+-+ |.+-.++-.-...|...|+...|+.=+.+..+. +||-..-. --
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 345555567777888899999998888877553 333344444556788888888888888887764 55532211 12
Q ss_pred HHHHhccccHHHHHHHHHHHhhcCCCcc--h------------hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH
Q 044047 97 FHGLFEIHQVEHALKLFDEMQHSDVAAE--T------------STYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEA 162 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (260)
...+.+.|.++.|..=|+...+...... . ......+..+...|+...|+.....+.+.. +-+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 3456688999999999998877642111 1 112233455667788889998888888765 667778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNC 230 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 230 (260)
+..-..+|...|++..|+.=++...+..- .+..++-.+-..+...|+.+.++...++.++. .||.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 88888999999999999888877766532 35566666777778889999999888888874 5554
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.83 E-value=0.0024 Score=42.52 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=55.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ 105 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (260)
...-+...|++++|..+|..+...+ +.+..-|..|..++-..+++++|+..|......+.. |+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 3344456677777777776665554 445555666666666666777777766665544332 44445556666666677
Q ss_pred HHHHHHHHHHHhh
Q 044047 106 VEHALKLFDEMQH 118 (260)
Q Consensus 106 ~~~a~~~~~~~~~ 118 (260)
.+.|...|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777776666655
No 195
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.82 E-value=0.00017 Score=47.95 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHh-----hcCCCcchhhHH
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQ-----HSDVAAETSTYN 129 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 129 (260)
..+...++..+...|++++|..+.+.+....+- +...|..+|.++...|+...|.+.|+++. +.|+.|+..+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345667777888889999999999988887443 77788889999999999999998888763 357888776543
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.80 E-value=0.0011 Score=48.42 Aligned_cols=98 Identities=16% Similarity=0.019 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC--CchhhHHHHH
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL--GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM--PNVVTYNIMI 202 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 202 (260)
.|...+..+.+.|++++|...|+.+....... .+..+..+...|...|++++|...|+.+.+.... .....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444455677777777777776543111 1346666777777777777777777777654211 1134444555
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 044047 203 HGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 203 ~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
.++...|+.++|..+|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666777777777777777664
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.73 E-value=0.0056 Score=41.58 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=81.3
Q ss_pred CCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC-cCHHHHHH
Q 044047 87 RPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE-LGIEAYSC 165 (260)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 165 (260)
-|+...-..|..+....|+..+|...|++....-...|......+.++....+++..|...++++-+.+.. -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45565566677777777777777777777665444456666666777777777777777777776654310 12233445
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
+.+.+...|....|...|+...+. -|+...-......+.+.|+.+++..-+..+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 667777777777777777777664 344443333344455666555554444333
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.72 E-value=0.00026 Score=40.69 Aligned_cols=56 Identities=11% Similarity=-0.012 Sum_probs=35.1
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 28 DGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
..|.+.+++++|.++++.+...+ |.+...|.....++.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556666666666666666654 445566666666666666666666666666654
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=97.71 E-value=0.0036 Score=41.70 Aligned_cols=92 Identities=13% Similarity=0.012 Sum_probs=69.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCC
Q 044047 131 FIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQ 210 (260)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (260)
..--+...|++++|..+|+.+...+ +-++.-+..|..++-..+++++|...|......+. -|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 3344557889999999998887766 55666677788888888899999988887766543 245555667788888899
Q ss_pred hHHHHHHHHHHHhC
Q 044047 211 MDKAHDLFLDMEAK 224 (260)
Q Consensus 211 ~~~a~~~~~~~~~~ 224 (260)
.+.|...|....+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988888873
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.69 E-value=0.0024 Score=46.74 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCChhhHHH
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN----VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK--GVAPNCVTFNT 235 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ 235 (260)
.|...+....+.|++++|...|+.+.+.. |+ ..++..+...|...|++++|...|..+.+. +-+.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444455677788877777777653 33 246667777777788888888888777754 11112344445
Q ss_pred HHHHHHhcCchhHHHHHHHHHhh
Q 044047 236 LMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 236 l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+..++...|+.++|..+++++++
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 56667777888888887777664
No 201
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.62 E-value=0.002 Score=41.31 Aligned_cols=78 Identities=9% Similarity=0.077 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhh---------------hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC-
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLR---------------VLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV- 189 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 189 (260)
.++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|.++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555555554332 1223355555555555555555555555555554332
Q ss_pred CCCCchhhHHHHHH
Q 044047 190 GLMPNVVTYNIMIH 203 (260)
Q Consensus 190 ~~~~~~~~~~~l~~ 203 (260)
+++.+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33333445555444
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.61 E-value=0.018 Score=44.15 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=15.7
Q ss_pred cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 103 IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
.|+.++|++++..+......+++.++..+.+.|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455555555555533333344455555555444
No 203
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.59 E-value=0.0035 Score=40.20 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------------hCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 159 GIEAYSCLIDGLCKIGKLETAWELFQSLP---------------RVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
|..++.+++.++++.|+.+....+++..= .....|+..+..+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45788999999999999999999887641 123458889999999999999999999999999876
Q ss_pred C-CCCCChhhHHHHHHHHHhcCc
Q 044047 224 K-GVAPNCVTFNTLMLGCIRNNE 245 (260)
Q Consensus 224 ~-~~~p~~~~~~~l~~~~~~~~~ 245 (260)
. +++.+..+|..|++-+...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 5 788889999999976655433
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.58 E-value=0.0017 Score=43.15 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=25.5
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSL 186 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (260)
.++..+...|+++.|..+.+.+.... |.+...|..++.+|...|+...|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444555555555555444443 344444555555555555555555554443
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.54 E-value=0.012 Score=40.10 Aligned_cols=133 Identities=18% Similarity=0.174 Sum_probs=99.7
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCC-cchhhHH
Q 044047 51 CMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVA-AETSTYN 129 (260)
Q Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 129 (260)
..|+...-..+..+....|+..+|...|++...--.-.|......+.++....+++..+...++.+-+.+.. .++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 357777778889999999999999999999876544556677777888888999999999999998765311 2344556
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQS 185 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (260)
.+.+.+...|.+.+|+.-|+..... -|+...-......+.+.|+.+++..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 7888999999999999999988865 45555444445566777776665544433
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.53 E-value=0.0013 Score=50.16 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=38.3
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 28 DGFCLTGEIDRARELFVSMDINGCMHN----VVTYNTLINGYCKTKDVEESLNLYS 79 (260)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 79 (260)
.-+++.|+.+....+|+...+.| ..| ..+|..+..+|.-.+++++|+++..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 34788899999999998888877 333 3456777778888888888887654
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.53 E-value=0.027 Score=44.07 Aligned_cols=67 Identities=10% Similarity=-0.046 Sum_probs=55.7
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch---hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV---VTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
+.++..++.+..+|.+.|++++|+..|++..+.+ |.+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4467788899999999999999999999988775 3233 35889999999999999999999998875
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.51 E-value=0.0004 Score=40.50 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCC-hhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFLDMEAK----GV-APN-CVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|.+++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444445555555555554444321 10 011 233444445555555555555555443
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.50 E-value=0.027 Score=43.28 Aligned_cols=100 Identities=11% Similarity=0.065 Sum_probs=70.3
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcC---CCCchhhHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCCccc
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDING---CMHNVVTYNTLINGYCK---TKDVEESLNLYSEMLSKGIRPTVVT 92 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (260)
++.+...++-+|....+++...++++.+.... +..+...-....-++.+ .|+.++|++++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445566777889999999999999997652 22233333355566667 8999999999999776667778899
Q ss_pred hHHHHHHHhc---------cccHHHHHHHHHHHhh
Q 044047 93 YNTLFHGLFE---------IHQVEHALKLFDEMQH 118 (260)
Q Consensus 93 ~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 118 (260)
+..+...|-. ....++|+..|.+.-+
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 9888877643 2235666666666544
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.49 E-value=0.0013 Score=37.68 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=19.4
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 171 CKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
.+.+++++|.++++.+...+. .+...+.....++...|++++|.+.|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444433321 122333333333444444444444444443
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.47 E-value=0.00043 Score=40.38 Aligned_cols=64 Identities=27% Similarity=0.290 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhc----CC-CC-chhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDIN----GC-MH-NVVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
..+|+.+...|...|++++|+..|++..+. |- .| ...++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467888888888999999999888887542 21 12 255677888888888888888888887654
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.47 E-value=0.03 Score=45.64 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=100.2
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHH----------
Q 044047 9 DLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLY---------- 78 (260)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~---------- 78 (260)
++++++|-.|+... +...++-.|.+.+|.++|.+--.. +..+..|.....++.|.+++
T Consensus 624 ~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKm 691 (1081)
T KOG1538|consen 624 EERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFLGSGDPKEKKM 691 (1081)
T ss_pred HHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHhhcCChHHHHH
Confidence 44555565565543 455566677777777777543221 12233333333333333333
Q ss_pred --HHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHH------HhhcCC---CcchhhHHHHHHHHHhcCcHHHHHHH
Q 044047 79 --SEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDE------MQHSDV---AAETSTYNTFIDGLCKNGYIVEAAEL 147 (260)
Q Consensus 79 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 147 (260)
++-.+. .-+..--.+....+...|+.++|..+.-. +.+.+. ..+..+...+...+.+...+.-|-++
T Consensus 692 L~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeI 769 (1081)
T KOG1538|consen 692 LIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEI 769 (1081)
T ss_pred HHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHH
Confidence 221111 01111112334445566666666554321 111111 12334455555555666677777777
Q ss_pred HHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchh-----------hHHHHHHHHHhcCChHHHHH
Q 044047 148 FRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVV-----------TYNIMIHGFCNDGQMDKAHD 216 (260)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~ 216 (260)
|.++-.. ..+++.....++|.+|..+-+...+. .|+.. -|...-++|.+.|+-.+|..
T Consensus 770 F~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~ 838 (1081)
T KOG1538|consen 770 FLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQ 838 (1081)
T ss_pred HHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHH
Confidence 7766432 35677778889999998888876653 23321 12333456667777777777
Q ss_pred HHHHHHhC
Q 044047 217 LFLDMEAK 224 (260)
Q Consensus 217 ~~~~~~~~ 224 (260)
+++++...
T Consensus 839 vLeQLtnn 846 (1081)
T KOG1538|consen 839 VLEQLTNN 846 (1081)
T ss_pred HHHHhhhh
Confidence 77776544
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.025 Score=46.50 Aligned_cols=122 Identities=14% Similarity=0.107 Sum_probs=63.4
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhc-CCCC--------chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDIN-GCMH--------NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIR 87 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 87 (260)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.+ --|++++|.++|-++.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 577888988888877777888888877665442 2211 01111111222 2478888888887765542
Q ss_pred CCccchHHHHHHHhccccHHHHHHHHHHHhhc-CCCcchhhHHHHHHHHHhcCcHHHHHHHHH
Q 044047 88 PTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS-DVAAETSTYNTFIDGLCKNGYIVEAAELFR 149 (260)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (260)
..+..+.+.|+|-.+.++++.--.. .-..-...|+.+...+.....+++|.+.+.
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455556665555544321000 000012344455555555555555554443
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.39 E-value=0.036 Score=42.32 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=73.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC-CCCC-chhhHHHHHHHHHh
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV-GLMP-NVVTYNIMIHGFCN 207 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~ 207 (260)
....++.+.|+..++-.+++.+-+.. |.+.++. +..+.+.|+. +..=++..... .++| +..+...+..+...
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 34456777788888888888777653 4443332 2223444443 22222222211 1233 35566667777778
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCchhHHHHHHHHHh
Q 044047 208 DGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIR-NNETSKVVELLHRMD 257 (260)
Q Consensus 208 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~ 257 (260)
.|++..|..--+.... ..|....|..|.+.-.. .||-.++.+++.+..
T Consensus 342 a~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 342 AGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred ccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 8888888776666555 47788888777765544 588888888876654
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.049 Score=41.89 Aligned_cols=226 Identities=13% Similarity=-0.011 Sum_probs=138.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ 105 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (260)
....+.+..++..|+..+....+.. +.+..-|..-+..+...|++++|.--.++-++.... ........-+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHH
Confidence 4455666778888888888888775 555667777777777888888887766655543211 12233333334444444
Q ss_pred HHHHHHHHH---------------HHhhcC-CCcchhhHHHH-HHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHH
Q 044047 106 VEHALKLFD---------------EMQHSD-VAAETSTYNTF-IDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLID 168 (260)
Q Consensus 106 ~~~a~~~~~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (260)
..+|...++ ...... -+|.-.++..+ ..++...|++++|...--.+.+.. ..+......-..
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccc
Confidence 444433332 111111 11222333322 345677889999988877776554 333333322233
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCchh---h----------HHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCChhh
Q 044047 169 GLCKIGKLETAWELFQSLPRVGLMPNVV---T----------YNIMIHGFCNDGQMDKAHDLFLDMEAK---GVAPNCVT 232 (260)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~----------~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~ 232 (260)
++-..++.+.+...|++....+ |+-. + +..-..-..+.|++.+|.+.|.+.+.. +..|+...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 4456788999999999888764 4322 1 112223345789999999999999864 35566777
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHH
Q 044047 233 FNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
|.....+..+.|+.++|+.--++.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhh
Confidence 877778888899999888665544
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.054 Score=41.05 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhc
Q 044047 129 NTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCND 208 (260)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (260)
+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-.++... . -++.-|..++.+|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 333444444555555555444432 34555555555566666665555443321 1 1234455555555555
Q ss_pred CChHHHHHHHHH
Q 044047 209 GQMDKAHDLFLD 220 (260)
Q Consensus 209 g~~~~a~~~~~~ 220 (260)
|+..+|..+..+
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 555555555544
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.055 Score=41.01 Aligned_cols=83 Identities=12% Similarity=0.277 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIR 242 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 242 (260)
.+..+.-+...|+...|.++-.+.. .|+..-|..-+.+++..++|++-..+... . -++.-|..++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHH
Confidence 3444555555666666665554443 25666666666666666666655554321 1 123455556666666
Q ss_pred cCchhHHHHHHHH
Q 044047 243 NNETSKVVELLHR 255 (260)
Q Consensus 243 ~~~~~~a~~~~~~ 255 (260)
.|+..+|..++.+
T Consensus 250 ~~~~~eA~~yI~k 262 (319)
T PF04840_consen 250 YGNKKEASKYIPK 262 (319)
T ss_pred CCCHHHHHHHHHh
Confidence 6666666655554
No 218
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.028 Score=46.94 Aligned_cols=177 Identities=11% Similarity=0.125 Sum_probs=106.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHh
Q 044047 24 STLIDGFCLTGEIDRARELFVSMDINGCMHN--VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLF 101 (260)
Q Consensus 24 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (260)
..-+..+.+..-++.|..+-+. .+.+++ ..........+.+.|++++|...|-+.... +.| ..++.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 3456666677777777766543 222222 234445556677789999998888776543 222 23556667
Q ss_pred ccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 044047 102 EIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWE 181 (260)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 181 (260)
...+....-.+++.+.+.|+ .+...-..|+.+|.+.++.++..++.+.....-...|. ...+..+.+.+-.+.|..
T Consensus 409 daq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~---e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDV---ETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeH---HHHHHHHHHhChHHHHHH
Confidence 77788888888888888884 45556678889999988888877776654411111122 334555556666666655
Q ss_pred HHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 182 LFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
+-..... +......++ ...+++++|.+.+..+
T Consensus 485 LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 5544332 222223322 3456666666665543
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.19 E-value=0.014 Score=45.51 Aligned_cols=63 Identities=19% Similarity=0.081 Sum_probs=32.5
Q ss_pred ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcch---hhHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 044047 90 VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAET---STYNTFIDGLCKNGYIVEAAELFRTLRV 153 (260)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (260)
...++.+..+|...|++++|+..|++..+.+ |.+. .+|..+..+|...|+.++|+..+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443 1122 2355555555555555555555555554
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.014 Score=42.26 Aligned_cols=96 Identities=21% Similarity=0.171 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-C-chhhHHHHHH
Q 044047 128 YNTFIDGLCKNGYIVEAAELFRTLRVLKC--ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM-P-NVVTYNIMIH 203 (260)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~ 203 (260)
|+..+..+ ..|++..|...|...++... ...+..+.+|..++...|+++.|..+|..+.+.-.. | -+.++-.|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444333 44446666666655554321 122334555566666666666666655555443211 1 1234445555
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 044047 204 GFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 204 ~~~~~g~~~~a~~~~~~~~~~ 224 (260)
+..+.|+.++|..+|++..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555566666666666665554
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.02 Score=43.75 Aligned_cols=124 Identities=18% Similarity=0.110 Sum_probs=84.2
Q ss_pred HHHhccccHHHHHHHHHHHhhc-----CC---------CcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHS-----DV---------AAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAY 163 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~-----~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (260)
+.+.+.|++..|..-|++.... +. ..-...+..+..++.+.+++..|++.-......+ +.|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3456667777776666664321 11 1123467778888889999999999988888877 7788887
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhH-HHHHHHHHhcCC-hHHHHHHHHHHHhC
Q 044047 164 SCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTY-NIMIHGFCNDGQ-MDKAHDLFLDMEAK 224 (260)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~-~~~a~~~~~~~~~~ 224 (260)
.--..++...|+++.|+..|+.+.+. .|+-... +.++..-.+... .+...++|..|...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77888899999999999999998885 4554443 444444333333 34457778877653
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.11 E-value=0.1 Score=42.04 Aligned_cols=157 Identities=15% Similarity=0.068 Sum_probs=102.6
Q ss_pred HHHhccccHHHHHHHHHHHhhcC-CCcch-----hhHHHHHHHHHh----cCcHHHHHHHHHHhhhcCCCcCHHHHHHH-
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSD-VAAET-----STYNTFIDGLCK----NGYIVEAAELFRTLRVLKCELGIEAYSCL- 166 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 166 (260)
....-.|+-+.+++.+.+..+.+ +.... -.|...+..++. ..+.+.+.+++..+... -|+...|...
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~ 273 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFE 273 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 44455688888888888765533 22111 123333333332 45677899999988875 4666555443
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhCC---CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHh
Q 044047 167 IDGLCKIGKLETAWELFQSLPRVG---LMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLM-LGCIR 242 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~ 242 (260)
.+.+...|++++|.+.++...... .+.....+.-+..++....+|++|.+.|..+.+.. .-+..+|..+. .++..
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 567778999999999999765321 11233456667777888999999999999999753 22444454443 34455
Q ss_pred cCch-------hHHHHHHHHHh
Q 044047 243 NNET-------SKVVELLHRMD 257 (260)
Q Consensus 243 ~~~~-------~~a~~~~~~m~ 257 (260)
.|+. ++|.++++++.
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHH
Confidence 7777 88888887764
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=97.07 E-value=0.075 Score=41.77 Aligned_cols=113 Identities=13% Similarity=-0.045 Sum_probs=67.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHH
Q 044047 70 DVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFR 149 (260)
Q Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (260)
+..+|.++.++..+.+.. |......+..+....++.+.+...|++....+ |....+|....-.+.-+|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345666666666666544 66666666666667777777777777777665 4455566666666667777777777777
Q ss_pred HhhhcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044047 150 TLRVLKC-ELGIEAYSCLIDGLCKIGKLETAWELFQS 185 (260)
Q Consensus 150 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (260)
...+... ..........+..|+.. ..+.|.+++.+
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 7554421 11122233334455444 45566666544
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.07 E-value=0.012 Score=45.14 Aligned_cols=254 Identities=14% Similarity=0.032 Sum_probs=149.4
Q ss_pred HHHHHHHHHHcCC---CccHHHHHHHHHHHhccCCHHHHHHHHHHH--hhc--CCC-CchhhHHHHHHHHHhcCChHHHH
Q 044047 4 ASRLLDLMIQRGV---RPNAFVYSTLIDGFCLTGEIDRARELFVSM--DIN--GCM-HNVVTYNTLINGYCKTKDVEESL 75 (260)
Q Consensus 4 a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~~-~~~~~~~~l~~~~~~~~~~~~a~ 75 (260)
.+.+|+...+.|- +.=...|..|..+|.-.+++++|+++...= ... |-. -...+-..+...+--.|.+++|+
T Consensus 36 Gv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~ 115 (639)
T KOG1130|consen 36 GVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEAL 115 (639)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHH
Confidence 4567777777762 222356777888888889999998865321 110 100 01112223333444456666665
Q ss_pred HHHHHH----HhcCCC-CCccchHHHHHHHhccc--------------------cHHHHHHHHHHHhh----cCC-Ccch
Q 044047 76 NLYSEM----LSKGIR-PTVVTYNTLFHGLFEIH--------------------QVEHALKLFDEMQH----SDV-AAET 125 (260)
Q Consensus 76 ~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~--------------------~~~~a~~~~~~~~~----~~~-~~~~ 125 (260)
-.-.+- .+.|-+ .....+..+...|...| .++.|.++|..-.+ .|- -...
T Consensus 116 ~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqG 195 (639)
T KOG1130|consen 116 TCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQG 195 (639)
T ss_pred HHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence 433221 111110 12233444555554333 23445555554222 110 1123
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhh----hcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh----CCCC-Cch
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLR----VLKC-ELGIEAYSCLIDGLCKIGKLETAWELFQSLPR----VGLM-PNV 195 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~ 195 (260)
..|..+...|.-.|+++.|+...+.-. +.|- ......++.+.+++.-.|+++.|.+.|+.... .|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456667777777889999987765422 2221 12345788899999999999999998876432 2211 234
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 196 VTYNIMIHGFCNDGQMDKAHDLFLDMEAK-----GVAPNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
.+..+|...|.-..++++|+.++.+-+.. ...-....+.+|..++...|..++|+.+...-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55667888888888899999888765421 122356788899999999999999998776543
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.06 E-value=0.12 Score=41.74 Aligned_cols=160 Identities=19% Similarity=0.073 Sum_probs=104.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCc------cchHHHHHHHhc----cccHHHHHHHHHHHhhcCCCcchhhHH
Q 044047 60 TLINGYCKTKDVEESLNLYSEMLSKGIRPTV------VTYNTLFHGLFE----IHQVEHALKLFDEMQHSDVAAETSTYN 129 (260)
Q Consensus 60 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 129 (260)
.++....=.||-+.+++.+.+..+.+--..+ ..|+..+..+.. ....+.+.++++.+.+.- |+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 3444445568889999998887654211122 223333333333 456788999999998763 4544443
Q ss_pred -HHHHHHHhcCcHHHHHHHHHHhhhcC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHH-H
Q 044047 130 -TFIDGLCKNGYIVEAAELFRTLRVLK---CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIH-G 204 (260)
Q Consensus 130 -~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 204 (260)
.-.+.+...|++++|++.|+...... .+.....+--+...+.-.++|++|...|..+.+.. ..+...|..+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 44567788999999999999765321 12233345566777888999999999999998864 224445544443 3
Q ss_pred HHhcCCh-------HHHHHHHHHHH
Q 044047 205 FCNDGQM-------DKAHDLFLDME 222 (260)
Q Consensus 205 ~~~~g~~-------~~a~~~~~~~~ 222 (260)
+...|+. ++|.++|.+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4457777 88888888764
No 226
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.045 Score=40.97 Aligned_cols=154 Identities=10% Similarity=0.019 Sum_probs=103.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhc---CCCcchhhHHHHHHHHHhcCcHH
Q 044047 66 CKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS---DVAAETSTYNTFIDGLCKNGYIV 142 (260)
Q Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 142 (260)
-..|+..+|-..++++.+. .+.|...+...=.++...|+.+.-...++++... ++|-....-..+.-++..+|.++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3457777787888888776 3446667777777888888888888888887543 33322333334455566789999
Q ss_pred HHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC---CCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 143 EAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG---LMPNVVTYNIMIHGFCNDGQMDKAHDLFL 219 (260)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 219 (260)
+|++.-++..+.+ +.|.-...+....+-..|+..++.++..+-...= .-.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888887766 6677677777777888888888888776543320 00012234444445566788999999887
Q ss_pred HH
Q 044047 220 DM 221 (260)
Q Consensus 220 ~~ 221 (260)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 54
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.032 Score=42.69 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=31.4
Q ss_pred chHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 044047 92 TYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (260)
++..+.-++.+.+++..|+....+....+ ++|.....--..++...|+++.|+..|+.+.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34444445555555555555555554444 444444444455555555555555555555544
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.061 Score=40.34 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=110.2
Q ss_pred ccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc---CCCcCHHHHHHHHHHHHhcCCHHH
Q 044047 102 EIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL---KCELGIEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 178 (260)
..|++.+|-..++++.+. .|.|...+...=.+|...|+.......++++... +.|..+.....+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 457777888888888876 4778888888888999999999999888888754 222223334455566678999999
Q ss_pred HHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 179 AWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK---GVAPNCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
|++.-++..+.+ +.|.-+-......+.-.|++.++.++..+-.+. +.-.-..-|-...-.+...+.++.|.++|++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999888764 235556677777888899999999988765433 1111123344455566777999999999876
Q ss_pred H
Q 044047 256 M 256 (260)
Q Consensus 256 m 256 (260)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=96.94 E-value=0.13 Score=40.44 Aligned_cols=114 Identities=12% Similarity=0.062 Sum_probs=85.2
Q ss_pred ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044047 104 HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELF 183 (260)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 183 (260)
....+|.++-+...+.+ +.|+.....+..+....++++.|..+|++....+ +....+|......+.-.|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44567788888888887 7788888888888888999999999999998875 555667777777888899999999999
Q ss_pred HhhhhCCCCCch---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 184 QSLPRVGLMPNV---VTYNIMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 184 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
++..+.. |.. ......+..|+.. ..+.|..++-+-.
T Consensus 396 ~~alrLs--P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 396 DKSLQLE--PRRRKAVVIKECVDMYVPN-PLKNNIKLYYKET 434 (458)
T ss_pred HHHhccC--chhhHHHHHHHHHHHHcCC-chhhhHHHHhhcc
Confidence 9977753 432 2333334455544 5677777775433
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.91 E-value=0.15 Score=40.59 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=88.9
Q ss_pred HHHHhccCCHHHHHHHHHHH-hhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc
Q 044047 27 IDGFCLTGEIDRARELFVSM-DINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ 105 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (260)
.....-.++++.+.+....- .-..+ +..-.+.++..+-+.|-.+.|+++...-. .-.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34444567777766666411 11111 24446777777777788877776654321 22334556777
Q ss_pred HHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044047 106 VEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQS 185 (260)
Q Consensus 106 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (260)
.+.|.++-++. .+...|..|.......|+++-|++.+.+... +..++-.|...|+.+...++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 77777665442 3556788888888888888888877776542 45566667777777777777766
Q ss_pred hhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 044047 186 LPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLD 220 (260)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 220 (260)
....| -++....++.-.|+.++..+++.+
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66543 234444455556676666666543
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.1 Score=38.42 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=22.9
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 31 CLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
...|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34444455555444444332 223334444444555555555555544444
No 232
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.88 E-value=0.0049 Score=31.31 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=22.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHH
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTL 61 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 61 (260)
++..+...|.+.|++++|.++|+++.+.. |-|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45556666666666666666666666554 4444444433
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.11 Score=38.25 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=103.9
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLE 177 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (260)
......|+..+|..+|+...... +-+......++.+|...|+.+.|..++..+....-.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567789999999999887765 44566777889999999999999999998765432222233333445555555555
Q ss_pred HHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 044047 178 TAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK--GVAPNCVTFNTLMLGCIRNNETSKVVELL 253 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (260)
+...+-...... +-|...-..+...+...|+.+.|.+.+-.+... |.. |...-..+++.+.--|.-+.+..-+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 555555555543 125666677888899999999999988877655 333 5566677888887777544443333
No 234
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.76 E-value=0.19 Score=39.48 Aligned_cols=146 Identities=17% Similarity=0.127 Sum_probs=96.7
Q ss_pred ccchHHHHHHHhccccHHHHHHHHHHHhhcC-CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHH
Q 044047 90 VVTYNTLFHGLFEIHQVEHALKLFDEMQHSD-VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLID 168 (260)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (260)
..+|...+....+..-.+.|..+|-++.+.+ +.++...+++++..++ .|++..|.++|+.-...- +.++.-.+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3456667777777778888888888888877 5567777777777654 577788888887655432 333333455667
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044047 169 GLCKIGKLETAWELFQSLPRVGLMPN--VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGC 240 (260)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 240 (260)
.+...++-+.|..+|+..... +..+ ...|..++..-..-|+...+..+=++|... .|...+......-|
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 777888888888888855443 1112 457788888777788887777777777653 44444433333333
No 235
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.74 E-value=0.15 Score=38.24 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhcCCCcCHHHHHHH
Q 044047 143 EAAELFRTLRVLKCELGIEAYSCL 166 (260)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l 166 (260)
.+.++++.+.+.++++....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 455555555555555555544443
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.74 E-value=0.21 Score=39.84 Aligned_cols=157 Identities=19% Similarity=0.179 Sum_probs=104.5
Q ss_pred HHHHhcCChHHHHHHHH--HHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCc
Q 044047 63 NGYCKTKDVEESLNLYS--EMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGY 140 (260)
Q Consensus 63 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 140 (260)
+...-.++++++.++.+ ++... + +..-.+.++..+.+.|.++.|+++-.. +. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence 44455788888877775 22211 2 244577888889999999999887433 21 22345567899
Q ss_pred HHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 044047 141 IVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLD 220 (260)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 220 (260)
++.|.++.++ ..++..|..|.......|+++-|.+.+.+..+ +..|+-.|...|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 9999876543 34778999999999999999999999987653 45667778889999888888887
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 221 MEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 221 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
....|- ++....++.-.|+.++..+++.+
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 776642 45566667777888888777765
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.062 Score=38.98 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC-ChhhHHHHH
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRVGLM--PNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK-GVAP-NCVTFNTLM 237 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~l~ 237 (260)
.|+.-+. +.+.|++..|...|....+.... -....+-+|..++...|+++.|..+|..+.+. +-.| -+..+-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 34566688888888777765321 11345667778888888888888888777654 1122 235666777
Q ss_pred HHHHhcCchhHHHHHHHHHhhc
Q 044047 238 LGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
.+..+.|+.++|..+|++++++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777788888888888777653
No 238
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.70 E-value=0.075 Score=34.08 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 044047 196 VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDERN 260 (260)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 260 (260)
......+..+..+|+-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++++.-++|
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34455556666777777777777776643 35566666777777777777777777777766654
No 239
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.67 E-value=0.036 Score=40.74 Aligned_cols=79 Identities=5% Similarity=0.112 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhh-----cCCCcchhhHH
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQH-----SDVAAETSTYN 129 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 129 (260)
..++..++..+...|+++.+.+.++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 445667777777777777777777777776443 677777777788888877777777777643 56777766666
Q ss_pred HHHHH
Q 044047 130 TFIDG 134 (260)
Q Consensus 130 ~l~~~ 134 (260)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
No 240
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.65 E-value=0.23 Score=39.04 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLSKG-IRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
.+|...+....+..-.+.|..+|-++.+.| +.+++..+++++..++. |+..-|..+|+--... .+.++.-....+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 346667777777778899999999999998 66788889999987765 7778899999875443 23444445567778
Q ss_pred HHhcCcHHHHHHHHHHhhhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 135 LCKNGYIVEAAELFRTLRVLKCELG--IEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
+...++-+.|..+|+..+..- ..+ ...|..++..-..-|+...+..+=+.+...
T Consensus 476 Li~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 888999999999999665431 223 568889999888999998887777776654
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.14 Score=36.66 Aligned_cols=195 Identities=14% Similarity=0.180 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchh------hHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCCC
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVV------TYNTLINGYCKTKDVEESLNLYSEMLS----KGIRPT 89 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 89 (260)
...|..-..+|....++++|...+.+..+. ...+.. .|...+...-....+.++..++++... .| .|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spd 108 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPD 108 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-Ccc
Confidence 445666677777788888888777666421 122222 233333333444455556665555432 22 122
Q ss_pred ccch--HHHHHHHhccccHHHHHHHHHHHhhc---C--CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc----CCCc
Q 044047 90 VVTY--NTLFHGLFEIHQVEHALKLFDEMQHS---D--VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL----KCEL 158 (260)
Q Consensus 90 ~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 158 (260)
+..- .-..+ ....-+++.|+++|++.... + ...-...+....+.+.+...+++|-..+.+-... .--+
T Consensus 109 tAAmaleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~ 187 (308)
T KOG1585|consen 109 TAAMALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN 187 (308)
T ss_pred hHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence 2111 11111 12334556666666554221 1 0011223334444455555555544443322110 0011
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHhhhhCC---CCCchhhHHHHHHHHHhcCChHHHHHHH
Q 044047 159 GI-EAYSCLIDGLCKIGKLETAWELFQSLPRVG---LMPNVVTYNIMIHGFCNDGQMDKAHDLF 218 (260)
Q Consensus 159 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 218 (260)
+. ..|-..|-.+....++..|...++.-.+.+ -.-+..+...|+.+| ..|+.+++..++
T Consensus 188 ~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 188 SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 11 223444445555556666666666533321 111344555555554 345555554443
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.63 E-value=0.097 Score=34.42 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=44.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccc
Q 044047 25 TLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIH 104 (260)
Q Consensus 25 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (260)
.++..+.+.+.......+++.+...+ +.+...++.++..|++.+. ++.+..++. .++.......++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 35555555566666666666666555 3555566666666665432 333333331 112333344555555555
Q ss_pred cHHHHHHHHHHH
Q 044047 105 QVEHALKLFDEM 116 (260)
Q Consensus 105 ~~~~a~~~~~~~ 116 (260)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555543
No 243
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.54 E-value=0.25 Score=38.08 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=36.6
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcC
Q 044047 167 IDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK-GVAP-NCVTFNTLMLGCIRNN 244 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 244 (260)
..++.+.|+..++-.+++.+-+....|+ .+.. -...+.|+. +..-+++.... .+.| +......+.++....|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 4556666666666666666665543333 2211 122334432 23333322211 1233 3344445556666666
Q ss_pred chhHHHH
Q 044047 245 ETSKVVE 251 (260)
Q Consensus 245 ~~~~a~~ 251 (260)
++..|..
T Consensus 344 e~~~ARa 350 (531)
T COG3898 344 EFSAARA 350 (531)
T ss_pred chHHHHH
Confidence 6655543
No 244
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.54 E-value=0.028 Score=40.95 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=69.2
Q ss_pred CccHHHHHHHHHHHhcc-----CCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC----------------ChHHHH
Q 044047 17 RPNAFVYSTLIDGFCLT-----GEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTK----------------DVEESL 75 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 75 (260)
..|-.+|-..+..+... +.++-....++.|.+.|+..|..+|+.|+..+-+-. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34666777777776543 566767777888889999999999999998765432 234678
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHhccccH
Q 044047 76 NLYSEMLSKGIRPTVVTYNTLFHGLFEIHQV 106 (260)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (260)
.++++|...|+.||..+-..++.++.+.+-.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8999999999999999999999998877653
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.50 E-value=0.1 Score=33.39 Aligned_cols=90 Identities=21% Similarity=0.162 Sum_probs=43.9
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH---HHHHHHHHHhcCCH
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEA---YSCLIDGLCKIGKL 176 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 176 (260)
++..|+.+.|++.|.+....- |-..+.||.-..++.-.|+.++|+.-+++..+..-+-+... |..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 444555555555555554432 33445555555555555555555555555444321222221 22223344455555
Q ss_pred HHHHHHHHhhhhCC
Q 044047 177 ETAWELFQSLPRVG 190 (260)
Q Consensus 177 ~~a~~~~~~~~~~~ 190 (260)
+.|..=|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55555555555444
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.50 E-value=0.015 Score=29.42 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=8.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHhh
Q 044047 131 FIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
+...|...|++++|+++++++.
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444444444443333
No 247
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.49 E-value=0.14 Score=34.63 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=15.2
Q ss_pred HHHHHhhcCCCcchhhHHHHHHHHHhcCcHHH
Q 044047 112 LFDEMQHSDVAAETSTYNTFIDGLCKNGYIVE 143 (260)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (260)
+++.+.+.+++|+...+..++..+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33334444445555555555555555554443
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.43 E-value=0.25 Score=36.86 Aligned_cols=223 Identities=12% Similarity=0.105 Sum_probs=123.8
Q ss_pred HhccCCHHHHHHHHHHHhhcC--CCCchh------hHHHHHHHHHhcC-ChHHHHHHHHHHHhc----C----CCCC---
Q 044047 30 FCLTGEIDRARELFVSMDING--CMHNVV------TYNTLINGYCKTK-DVEESLNLYSEMLSK----G----IRPT--- 89 (260)
Q Consensus 30 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~--- 89 (260)
..+.|+.+.|..++.+..... ..|+.. .|+.-.. ....+ +++.|..++++..+. + ..|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 356899999999998886532 223221 2333333 34455 888888887776443 1 1222
Q ss_pred --ccchHHHHHHHhccccHH---HHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHH
Q 044047 90 --VVTYNTLFHGLFEIHQVE---HALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYS 164 (260)
Q Consensus 90 --~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (260)
..+...++.+|...+..+ +|..+++.+... .+..+..+..-+..+.+.++.+.+.+.+..|...- ......+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHH
Confidence 234556777777766654 455566666443 24445666677788888899999999999998753 22333444
Q ss_pred HHHHHH---HhcCCHHHHHHHHHhhhhCCCCCchh-hHHH-HH-HHH--HhcCC------hHHHHHHHHHHHhC-CCCCC
Q 044047 165 CLIDGL---CKIGKLETAWELFQSLPRVGLMPNVV-TYNI-MI-HGF--CNDGQ------MDKAHDLFLDMEAK-GVAPN 229 (260)
Q Consensus 165 ~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~-~~~--~~~g~------~~~a~~~~~~~~~~-~~~p~ 229 (260)
.++..+ .... ...+...+..+....+.|... .... ++ ..+ .+.++ .+....+++...+. +.+.+
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 444444 3333 345555665555444444443 1111 11 111 12211 44455555543332 33444
Q ss_pred hhhHHHHH-------HHHHhcCchhHHHHHHHHH
Q 044047 230 CVTFNTLM-------LGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 230 ~~~~~~l~-------~~~~~~~~~~~a~~~~~~m 256 (260)
..+-..+. ..+.+.++++.|.++++-.
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 44433322 3456789999999998743
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.39 E-value=0.046 Score=39.93 Aligned_cols=91 Identities=12% Similarity=0.205 Sum_probs=72.8
Q ss_pred CCchhhHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccc----------------cHHHHH
Q 044047 52 MHNVVTYNTLINGYCKT-----KDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIH----------------QVEHAL 110 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 110 (260)
+.|..+|-..+..+... +.++-....++.|.+-|+.-|..+|+.|+..+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45667777777666543 567777888899999999999999999998765432 334578
Q ss_pred HHHHHHhhcCCCcchhhHHHHHHHHHhcCcHH
Q 044047 111 KLFDEMQHSDVAAETSTYNTFIDGLCKNGYIV 142 (260)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 142 (260)
.++++|...|+.||..+-..+++++.+.+..-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 99999999999999999999999999887654
No 250
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.36 E-value=0.4 Score=39.91 Aligned_cols=183 Identities=18% Similarity=0.139 Sum_probs=103.0
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCccchHHHHH----------HHhccccHHHHHHHHHHHhhcC
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK-GIRPTVVTYNTLFH----------GLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
.|.+..|..+.......-+++.|...|-+...- |++ ....|-. .-+--|++++|.++|-.+-+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik----~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK----LVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh----HHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 588999999998888777888888777655431 221 1111111 1123478889988887775543
Q ss_pred CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHh-------------h
Q 044047 121 VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK-CELGIEAYSCLIDGLCKIGKLETAWELFQS-------------L 186 (260)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------------~ 186 (260)
..+..+.+.|++-...++++.--... -..-...++.+...+.....|++|.+.+.. +
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~l 835 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRL 835 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 34455566666666655554311000 000112344444444444444444443322 1
Q ss_pred hh--------CCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 187 PR--------VGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 187 ~~--------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
.. ..++-+....-.+..++.+.|.-++|.+.+-+.-. | ...+..|...++|.+|.++-++.
T Consensus 836 e~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 836 ELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 11333455566677788888888888777644321 1 24567788888888888877653
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.27 E-value=0.44 Score=38.01 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhCCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 165 CLIDGLCKIGKLETAWELFQSLPRVGLM-PNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
.+..++-+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3455555667777777777666543211 1234555666667777777777776666543
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.21 E-value=0.18 Score=33.08 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc
Q 044047 59 NTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN 138 (260)
Q Consensus 59 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 138 (260)
..++..+...+.......+++.+...+. .+...++.++..|++.+ .......++. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3445555555666666666666666553 35556666666666543 2333333331 11223334455555566
Q ss_pred CcHHHHHHHHHHh
Q 044047 139 GYIVEAAELFRTL 151 (260)
Q Consensus 139 ~~~~~a~~~~~~~ 151 (260)
+.++++.-++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6555555555543
No 253
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.18 E-value=0.12 Score=38.03 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 044047 129 NTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLP 187 (260)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (260)
..++..+...|+.+.+...++++.... +.+...|..++.+|.+.|+...|+..|+.+.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444444555555555555555443 4444555555555555555555555554443
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.18 E-value=0.17 Score=32.47 Aligned_cols=93 Identities=19% Similarity=0.067 Sum_probs=71.4
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCch---hhHHHHHHHHHhc
Q 044047 132 IDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNV---VTYNIMIHGFCND 208 (260)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 208 (260)
.-++...|+.+.|++.|......- +.....||.-..++.-.|+.++|+.=+++..+..-.-.. .+|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 346678899999999998887654 667888999999999999999999988887765211122 3344445567788
Q ss_pred CChHHHHHHHHHHHhCC
Q 044047 209 GQMDKAHDLFLDMEAKG 225 (260)
Q Consensus 209 g~~~~a~~~~~~~~~~~ 225 (260)
|+-+.|..=|....+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999999888876
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.12 E-value=0.3 Score=34.68 Aligned_cols=167 Identities=19% Similarity=0.093 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHH-
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLSK-GIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFID- 133 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 133 (260)
..+......+...+++..+...+...... ........+......+...+....+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444444445554444444444331 112223333344444444444445555544444332111 111111122
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCCh
Q 044047 134 GLCKNGYIVEAAELFRTLRVLKC--ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQM 211 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (260)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 34445555555555554433110 0112222222333444445555555555444432110133444444444445555
Q ss_pred HHHHHHHHHHHh
Q 044047 212 DKAHDLFLDMEA 223 (260)
Q Consensus 212 ~~a~~~~~~~~~ 223 (260)
+.+...+.....
T Consensus 219 ~~a~~~~~~~~~ 230 (291)
T COG0457 219 EEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHh
Confidence 555555555444
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.08 E-value=0.34 Score=35.05 Aligned_cols=158 Identities=14% Similarity=0.106 Sum_probs=75.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCC--CCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh------
Q 044047 66 CKTKDVEESLNLYSEMLSKGIR--PTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK------ 137 (260)
Q Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 137 (260)
.+.|++++|.+.|+.+....+- -...+-..++.++.+.++++.|+..+++............|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4556666666666666544211 11233334445555666666666666665544322222233333333331
Q ss_pred -cCcHHHH---HHHHHHhhh----cCCCcCHHHH------------HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc---
Q 044047 138 -NGYIVEA---AELFRTLRV----LKCELGIEAY------------SCLIDGLCKIGKLETAWELFQSLPRVGLMPN--- 194 (260)
Q Consensus 138 -~~~~~~a---~~~~~~~~~----~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 194 (260)
..+...+ ..-|++++. +...+|...- ..+.+.|.+.|.+..|..-++.+.+. .+-.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~ 203 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAV 203 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccch
Confidence 1222222 222222222 1112222110 23455667777777777777776665 1111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 195 VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
...+-.+..+|...|-.++|...-.-+...
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 234555566677777777776665555443
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.01 E-value=0.23 Score=32.50 Aligned_cols=86 Identities=19% Similarity=0.138 Sum_probs=62.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcC--CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDING--CMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
.+-.-.....+.|++++|.+.|+.+...- -+-...+--.++.+|.+.+++++|...+++.++..+......|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 33345566678899999999999887652 1334556678888999999999999999999987666556667777777
Q ss_pred HhccccHH
Q 044047 100 LFEIHQVE 107 (260)
Q Consensus 100 ~~~~~~~~ 107 (260)
++.-...+
T Consensus 92 L~~~~~~~ 99 (142)
T PF13512_consen 92 LSYYEQDE 99 (142)
T ss_pred HHHHHHhh
Confidence 66544433
No 258
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.98 E-value=0.35 Score=34.28 Aligned_cols=201 Identities=20% Similarity=0.100 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhc-CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDIN-GCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
...+......+...+.+..+...+...... ..+.....+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 567777888888999999999988887652 235566778888888888899999999999988764443 222333333
Q ss_pred -HHhccccHHHHHHHHHHHhhcCC--CcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc-CHHHHHHHHHHHHhcC
Q 044047 99 -GLFEIHQVEHALKLFDEMQHSDV--AAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL-GIEAYSCLIDGLCKIG 174 (260)
Q Consensus 99 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 174 (260)
.+...|+++.+...+.+...... ......+......+...++.+.+...+....... +. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 78899999999999999865321 1233444445555677899999999999988764 33 4677888889999999
Q ss_pred CHHHHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 175 KLETAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
+++.+...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 217 ~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999988753 33 344555555555777899999999888875
No 259
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.96 E-value=0.44 Score=35.24 Aligned_cols=146 Identities=10% Similarity=0.114 Sum_probs=101.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhh-cCCCCchhhHHHHHHHHHh-cC-ChHHHHHHHHHHHh-cCCCCCccchHHHHH
Q 044047 23 YSTLIDGFCLTGEIDRARELFVSMDI-NGCMHNVVTYNTLINGYCK-TK-DVEESLNLYSEMLS-KGIRPTVVTYNTLFH 98 (260)
Q Consensus 23 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 98 (260)
|..++. +...+.+|+.+|+.... ..+-.|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555543 44567888888885433 3455678888888877766 22 22222333333332 345678888889999
Q ss_pred HHhccccHHHHHHHHHHHhhc-CCCcchhhHHHHHHHHHhcCcHHHHHHHHHH-----hhhcCCCcCHHHHHHHHHHHH
Q 044047 99 GLFEIHQVEHALKLFDEMQHS-DVAAETSTYNTFIDGLCKNGYIVEAAELFRT-----LRVLKCELGIEAYSCLIDGLC 171 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 171 (260)
.++..+++....++++..... +...|...|..++......|+..-..++..+ +.+.+++.+...-..+-..+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 999999999999999987655 4556788899999999999999988888776 345666777666555544443
No 260
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.12 Score=38.36 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=78.3
Q ss_pred HHHHHhccccHHHHHHHHHHHh----------hcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC---CCcCHHH
Q 044047 96 LFHGLFEIHQVEHALKLFDEMQ----------HSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK---CELGIEA 162 (260)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 162 (260)
|.++|.....|+.-....-.+- ..|.+.+..+...++..-....+++.+...+-++.... ..++...
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~ 104 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI 104 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence 4555665555554333332221 12344455556666666666677888877776665432 1122222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
..+++.+. .-+.++++.++..=.+.|+-||..+++.++..+.+.+++.+|..+...|...
T Consensus 105 -~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 105 -HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred -HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22333333 3366788888888888888888888888888888888888888888777655
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.55 Score=39.85 Aligned_cols=179 Identities=11% Similarity=0.061 Sum_probs=118.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT--VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
....-+..+.+...++-|+.+.+.-. ..++ ..........+.+.|++++|...|-+-+..- .| ..++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHH
Confidence 45566777788888888888775532 2222 2233344455668899999998887765431 22 245566
Q ss_pred HHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHH
Q 044047 135 LCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKA 214 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 214 (260)
|........-..+++.+.+.| -.+...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 667777777788888998888 4566677889999999999999888887665 3322 11234566777778888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 215 HDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 215 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
..+-.+... +......+ +-..|++++|++++..+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 776655433 22332333 34567788888777654
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.41 Score=34.44 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCChhhH
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRV----GLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKG---VAPNCVTF 233 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~ 233 (260)
.+....+.+.+...+++|-..+.+-... .--++ -..|...|-.+....++..|...++.-.+.+ -+-+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3444445555555555544433322111 00112 2334444555555556666666666543321 12244555
Q ss_pred HHHHHHHHhcCchhHHHHHH
Q 044047 234 NTLMLGCIRNNETSKVVELL 253 (260)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~ 253 (260)
..|+.+| ..||.+++..++
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 5555555 345555554443
No 263
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.85 E-value=0.86 Score=37.74 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=105.3
Q ss_pred HHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHH------
Q 044047 43 FVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEM------ 116 (260)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------ 116 (260)
++++.++|-.|+... +...++-.|++.+|-++|.+- |.. +..+..|...+.++.|.+++..-
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKK 690 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKK 690 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHH
Confidence 445556664465533 345566678888888877653 222 12333344444444443333210
Q ss_pred ---hh-cCCCcchhhHHHHHHHHHhcCcHHHHHHHHHH------hhhcCC---CcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044047 117 ---QH-SDVAAETSTYNTFIDGLCKNGYIVEAAELFRT------LRVLKC---ELGIEAYSCLIDGLCKIGKLETAWELF 183 (260)
Q Consensus 117 ---~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 183 (260)
++ .....+..--.+....+...|+..+|..+.-+ +...+. ..+..+...+...+.+...+.-|-++|
T Consensus 691 mL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF 770 (1081)
T KOG1538|consen 691 MLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIF 770 (1081)
T ss_pred HHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHH
Confidence 00 00001111112344555667777776665321 111111 223344555555556666777777787
Q ss_pred HhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-----------hHHHHHHHHHhcCchhHHHHH
Q 044047 184 QSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCV-----------TFNTLMLGCIRNNETSKVVEL 252 (260)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~ 252 (260)
..|-.. ..++......++|++|..+-+...+. .||.. -|...-.+|.+.|+..+|.++
T Consensus 771 ~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~v 839 (1081)
T KOG1538|consen 771 LKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQV 839 (1081)
T ss_pred HHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHH
Confidence 766532 35667778899999999988876653 33322 234455788889999999998
Q ss_pred HHHHh
Q 044047 253 LHRMD 257 (260)
Q Consensus 253 ~~~m~ 257 (260)
++++.
T Consensus 840 LeQLt 844 (1081)
T KOG1538|consen 840 LEQLT 844 (1081)
T ss_pred HHHhh
Confidence 88764
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.81 E-value=0.75 Score=36.77 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=26.4
Q ss_pred HHHHhccccHHHHHHHHHHHhhcCCC-cchhhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 97 FHGLFEIHQVEHALKLFDEMQHSDVA-AETSTYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
..++.+.|+.++|++.+++|.+.... ........|+.++...+.+.++..++.+..
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33444455555555555555433211 122344455555555555555555555543
No 265
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.75 E-value=0.39 Score=33.08 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=9.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHh
Q 044047 95 TLFHGLFEIHQVEHALKLFDEMQ 117 (260)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~ 117 (260)
.+...|.+.|+.+.|++.|.++.
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~ 63 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRAR 63 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHh
Confidence 33344444444444444444443
No 266
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.74 E-value=0.4 Score=38.08 Aligned_cols=112 Identities=11% Similarity=0.040 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 5 SRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
.++++.++.....|+.. ..........|+++.+...+...... +.....+...+++...+.|++++|..+-+-|...
T Consensus 310 ~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 310 QQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 34555555543333333 33344456678888888877665433 2345667778888888888888888888888776
Q ss_pred CCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcC
Q 044047 85 GIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
.++ ++..........-..|-++++...|+++...+
T Consensus 387 eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 387 EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 665 55555544445556677888888888876655
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.72 E-value=0.034 Score=26.70 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 198 YNIMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 198 ~~~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
|..|...|.+.|++++|.+++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666667777777777766643
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.71 E-value=0.32 Score=33.52 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHH---H
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLRVLKCELG--IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYN---I 200 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ 200 (260)
..+..+...|.+.|+.+.|.+.+.++......+. ...+-.+++.....+++..+...+.++...--.+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566777778888888888888887776544433 2345666777777788887777776665432121111111 1
Q ss_pred HHH--HHHhcCChHHHHHHHHHH
Q 044047 201 MIH--GFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 201 l~~--~~~~~g~~~~a~~~~~~~ 221 (260)
... .+...+++..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 223466677777666543
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.68 E-value=0.53 Score=34.10 Aligned_cols=168 Identities=16% Similarity=0.108 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcC--CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDING--CMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
...|+ -+..-.+.|++++|.+.|+.+.... -+-...+--.++.++.+.++++.|+..+++....-+......|...|
T Consensus 35 ~~LY~-~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYN-EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 33454 4555668999999999999998653 23345566777888999999999999999998875554555666666
Q ss_pred HHHhcc-------ccHHH---HHHHHHHHhhc----CCCcchhh------------HHHHHHHHHhcCcHHHHHHHHHHh
Q 044047 98 HGLFEI-------HQVEH---ALKLFDEMQHS----DVAAETST------------YNTFIDGLCKNGYIVEAAELFRTL 151 (260)
Q Consensus 98 ~~~~~~-------~~~~~---a~~~~~~~~~~----~~~~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~ 151 (260)
.+++.- .+... |..-|+.+... ...+|... =..+.+.|.+.|.+..|..-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 665532 23333 44444444443 12222211 124567788999999999999999
Q ss_pred hhcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 152 RVLKCELG---IEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 152 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
.+. .+-+ ...+-.+..+|...|-.++|...-.-+...
T Consensus 194 ~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 194 LEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred Hhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 876 2333 345666788999999999998887776665
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.53 E-value=0.045 Score=26.25 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 044047 58 YNTLINGYCKTKDVEESLNLYSE 80 (260)
Q Consensus 58 ~~~l~~~~~~~~~~~~a~~~~~~ 80 (260)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.47 E-value=0.87 Score=35.18 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=33.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
...+..+.|+++...+........ .++...+..+... +.++++++...+++...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 355667788888865555544432 2344444444443 77888888888777655
No 272
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.43 E-value=0.022 Score=27.02 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=9.8
Q ss_pred CchhhHHHHHHHHHhcCChHHH
Q 044047 53 HNVVTYNTLINGYCKTKDVEES 74 (260)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~a 74 (260)
-+..+|+.+...|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444444
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.39 E-value=0.62 Score=32.98 Aligned_cols=183 Identities=14% Similarity=-0.010 Sum_probs=103.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHH
Q 044047 33 TGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKL 112 (260)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 112 (260)
.|-+..|.-=|.+..... |.-+.+||-+.-.+...|+++.|.+.|+...+..+.-+ .++..-.-++.-.|+++-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHH
Confidence 344444444455544443 44577899999999999999999999999988644322 2222222234456888888877
Q ss_pred HHHHhhcCC-CcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHH-HHHHHhcCCHHHHHHHHHhhhhCC
Q 044047 113 FDEMQHSDV-AAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCL-IDGLCKIGKLETAWELFQSLPRVG 190 (260)
Q Consensus 113 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~ 190 (260)
+.+.-+.+. .|-...|.-+. -..-++.+|..-+.+--+ ..+..-|... +..|...=..+. +++.+....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEET---LMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHH---HHHHHHhhc
Confidence 777655541 12222232222 234456666654433221 2333344332 233322212222 233332211
Q ss_pred C------CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044047 191 L------MPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGV 226 (260)
Q Consensus 191 ~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 226 (260)
- ..-..||-.+.+.+...|+.++|..+|+-....++
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 0 01146788888999999999999999998887643
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.32 E-value=0.51 Score=31.61 Aligned_cols=51 Identities=16% Similarity=-0.032 Sum_probs=23.8
Q ss_pred ccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 044047 102 EIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRV 153 (260)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (260)
+.++.+.+..++..+.-.. |-....-..-...+...|++.+|.++|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4455555555555554432 11122222223334555566666666665544
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.14 E-value=0.54 Score=30.84 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=32.5
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLKC--ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG 190 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (260)
....+.|++++|.+.|+.+...-. +-....--.++.+|.+.++++.|...+++.++..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 334455666666666666654320 1123344556666666666666666666666654
No 276
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=1 Score=33.80 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=89.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHH----------hcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcC---CCcchhh
Q 044047 61 LINGYCKTKDVEESLNLYSEML----------SKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSD---VAAETST 127 (260)
Q Consensus 61 l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 127 (260)
+.+++.....|+.-....-++- ..|......+...++.......+++.++.++-+++..- ..++. +
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~ 103 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-T 103 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-c
Confidence 4455666666654444332332 23455566677777777777888999999888886542 12222 2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 044047 128 YNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG 190 (260)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (260)
-...++.+. .-++.+++.++..-+..|+-||..+++.++..+.+.+++.+|.++...|....
T Consensus 104 ~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 104 IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 233444443 34677999999999999999999999999999999999999999988877653
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.06 E-value=1.1 Score=33.85 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHhcCCCCCccchHHHHHHHhc--c----ccHHHHHHHHHHHhhcCCC---cchhhHHHHHHHHHhcCcH
Q 044047 71 VEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE--I----HQVEHALKLFDEMQHSDVA---AETSTYNTFIDGLCKNGYI 141 (260)
Q Consensus 71 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 141 (260)
+++.+.+++.|.+.|..-+..+|.+....... . .....+..+|+.|++...- ++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788888888888776666553333332 1 2355678888888876422 233344444332 33333
Q ss_pred ----HHHHHHHHHhhhcCCCcCH--HHHHHHHHHHHhcCC--HHHHHHHHHhhhhCCCCCchhhHHHHHH
Q 044047 142 ----VEAAELFRTLRVLKCELGI--EAYSCLIDGLCKIGK--LETAWELFQSLPRVGLMPNVVTYNIMIH 203 (260)
Q Consensus 142 ----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (260)
+.++.+++.+...|+..+- ...+.++..+..... ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3456677777776655443 233333333322222 3477888888888888777666655443
No 278
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.03 E-value=0.55 Score=30.33 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGL 191 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 191 (260)
.+...+..+...|.-+...++++.+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44455555666666666666666655432 55566666666666666666666666666666554
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.99 E-value=0.039 Score=26.14 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhcCCHHH
Q 044047 160 IEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~ 178 (260)
+..|+.+...|...|++++
T Consensus 13 ~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred HHHHHHHHHHHHHCcCHHh
Confidence 3333333333333333333
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.93 E-value=1.3 Score=34.07 Aligned_cols=201 Identities=11% Similarity=0.067 Sum_probs=90.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHH-HH---hhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCC---ccc
Q 044047 22 VYSTLIDGFCLTGEIDRARELFV-SM---DING-CMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK-GIRPT---VVT 92 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~-~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~ 92 (260)
+|..+..+.++.|.+++++..-- +| .+.. -..--..|..+.+++-+..++.+++.+-+.-... |..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44555555566666555543221 11 1110 0111233444444444444455554444333221 22221 122
Q ss_pred hHHHHHHHhccccHHHHHHHHHHHhhcC-----CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhh----cCCCcCHH--
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDEMQHSD-----VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRV----LKCELGIE-- 161 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-- 161 (260)
..++..+....+.++++++.|+...+.. ......++..+...|.+..++++|.-+..+..+ .++. |..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~k 203 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLK 203 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHH
Confidence 2334455555666666666666653321 111234566666666666676666655544322 1111 111
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 162 ----AYSCLIDGLCKIGKLETAWELFQSLPRV----GLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 162 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
....+.-++...|....|.+.-++..+. |-++. ......+.+.|...|+.+.|..-|+....
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 1122334455556666666555554332 21111 12334455566666666666665555443
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=0.78 Score=31.22 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=82.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc-chHHHHHHHhccccHHHHHHHHHHHhhcCCCcchh-hHH--
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVV-TYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETS-TYN-- 129 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-- 129 (260)
+...|...+.. ...+..++|+.-|..+.+.|...-+. .--.........|+...|...|+++-.....|... -..
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 44455555543 45566778888888887765432111 11122334567788888888888876543223221 111
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMP 193 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 193 (260)
--.-.+..+|.+++.....+-+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+.+....|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1122345678888877777766655434344445666677778888888888888877643333
No 282
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.75 E-value=0.52 Score=28.75 Aligned_cols=77 Identities=6% Similarity=0.083 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCHH--HHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044047 162 AYSCLIDGLCKIGKLE--TAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLG 239 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 239 (260)
-|+.--..|....+.+ +..+-+..+....+.|++....+.+++|.+.+++..|.++|+....+ ..+....|..+++-
T Consensus 10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 3444444444444433 66777777778888899999999999999999999999999988765 33333377776654
No 283
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.64 E-value=0.68 Score=32.33 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=44.4
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCchh
Q 044047 171 CKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK---GVAPNCVTFNTLMLGCIRNNETS 247 (260)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~ 247 (260)
.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 345555555555543334444444444444 55667777777666543 23556777777777777777776
Q ss_pred HHH
Q 044047 248 KVV 250 (260)
Q Consensus 248 ~a~ 250 (260)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 664
No 284
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=2.4 Score=35.81 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcC--CC--CchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDING--CM--HNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
.+|..+..-....|+++.|..+++.=...+ ++ .+..-+...+.-+...||.+....++-.+.
T Consensus 508 iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 508 ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 456667777777888888887775432221 00 122234455555666666666655555443
No 285
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.62 E-value=0.45 Score=28.70 Aligned_cols=47 Identities=6% Similarity=-0.003 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 044047 141 IVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLP 187 (260)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (260)
.-++.+-++.+.....-|++....+.+++|.+.+++..|.++++..+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555444
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.57 E-value=0.94 Score=30.86 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=87.7
Q ss_pred CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchh-hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHH-HHHHH
Q 044047 89 TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETS-TYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIE-AYSCL 166 (260)
Q Consensus 89 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 166 (260)
....|...++ +.+.+..++|+.-|..+.+.|...-+. ...-........|+...|...|.++-.....|.+. -..-+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3455555554 346678888999999988877543222 12223344667888889999998887654333322 11111
Q ss_pred --HHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 044047 167 --IDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAP 228 (260)
Q Consensus 167 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 228 (260)
...+...|.++....-.+-+...+-+.....-..|.-+-.+.|++.+|...|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22345678888877777766655433334445566677778899999999998887653344
No 287
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.51 E-value=2.1 Score=34.60 Aligned_cols=180 Identities=11% Similarity=0.048 Sum_probs=112.6
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
.|....-+++..+.+...+.-...+..+|...| .+...|..++++|... ..+.-..+++++.+.... |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 455566677777888888888888888888775 5677788888888887 556778888888876554 555555566
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCc-----chhhHHHHHHHHHhcCcHHHHHHHHHHhhhc-CCCcCHHHHHHHHHHHH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAA-----ETSTYNTFIDGLCKNGYIVEAAELFRTLRVL-KCELGIEAYSCLIDGLC 171 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 171 (260)
..|-+ ++.+.+..+|......-++. -...|..+... -..+.+....+...+... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 77777777777765543321 11234333331 134556666666555432 22233344555556777
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHH
Q 044047 172 KIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGF 205 (260)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (260)
...++.+|.+++..+.+..- -|..+-..++..+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 88888888888887776542 2444444444433
No 288
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.44 E-value=0.46 Score=28.64 Aligned_cols=64 Identities=6% Similarity=0.017 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 35 EIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 35 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
+.=++.+-++.+...+..|++....+.+++|-+.+|+..|.++++-.+.. ...+...|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence 44456777777777788888888888888888888888888888877643 12234466665544
No 289
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.42 E-value=1.2 Score=35.58 Aligned_cols=118 Identities=9% Similarity=0.001 Sum_probs=72.0
Q ss_pred hcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHH
Q 044047 137 KNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHD 216 (260)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 216 (260)
..|+.-.|-+-+....... +-++.............|+++.+.+.+...... +.....+..++++.....|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4566555544443333221 333333334445556778888888877665543 22345677788888888888888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 217 LFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 217 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
+-..|+...+. +++......-..-..|-++++...|+++.
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 88888776554 44444444444455677777777777654
No 290
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.41 E-value=2.5 Score=35.16 Aligned_cols=178 Identities=13% Similarity=0.052 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHH---HhccCCHHHHHHHHHHHhh-------cCCCCchhhHHHHHHHHHhcC---
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDG---FCLTGEIDRARELFVSMDI-------NGCMHNVVTYNTLINGYCKTK--- 69 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~--- 69 (260)
+|.+.++.....|.. .......++.. +....+.+.|..+++.+.+ .+ .+.....+..+|.+..
T Consensus 230 ~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 230 EAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred HHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence 567777777777621 22222222222 3356789999999988866 44 4446667777777643
Q ss_pred --ChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc-cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHH----hcCcHH
Q 044047 70 --DVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE-IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLC----KNGYIV 142 (260)
Q Consensus 70 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~ 142 (260)
+.+.|+.++.+..+.|.+ +.......+..... ..+...|.++|...-+.|.. . .+..+..+|. ...+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCCcCCCHH
Confidence 667799999988887643 44433333322222 24678899999998888743 2 2222332222 234678
Q ss_pred HHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 044047 143 EAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG 190 (260)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (260)
.|..++++.-+.+ .|...--...+..+.. +.++.+.-.+..+...|
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 8888888887776 3332222222233333 56666655555555444
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.41 E-value=0.14 Score=23.98 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 198 YNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 198 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
|..+..++...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444444444444444443
No 292
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=3.2 Score=35.13 Aligned_cols=115 Identities=13% Similarity=0.117 Sum_probs=84.6
Q ss_pred CcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHH
Q 044047 122 AAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIM 201 (260)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (260)
.....+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..++|++-+++-+..+ .+.-|...
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 3344456666677778899999988877766 6788888888899999999988776655433 24567888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 202 IHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 202 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
+.+|.+.|+.++|..++.+.... . -...+|.+.|++.+|.++--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 89999999999999887654331 1 466777888888877765443
No 293
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.04 E-value=0.99 Score=30.90 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhcCCCcchhhHHHHHHHHH---hcCcHHHHHHHHHHh
Q 044047 106 VEHALKLFDEMQHSDVAAETSTYNTFIDGLC---KNGYIVEAAELFRTL 151 (260)
Q Consensus 106 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~ 151 (260)
++.|.+.++.-...+ |.|...++.-..++. +.....++.+++++.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedA 54 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDA 54 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 344555555443333 444444443333332 233334455555544
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.03 E-value=0.21 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=13.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDIN 49 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 49 (260)
+|..+..++...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444555555555555555555554443
No 295
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=1.6 Score=31.36 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCC
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRVGLM 192 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 192 (260)
+...-...+++.+|.++|++.....+.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445678888999999887765443
No 296
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.95 E-value=2.2 Score=32.83 Aligned_cols=126 Identities=14% Similarity=0.076 Sum_probs=56.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-----CCCCccchHHHHHHHhccccHHHHHHHHHHHhh----cCCCcchh-----
Q 044047 61 LINGYCKTKDVEESLNLYSEMLSKG-----IRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQH----SDVAAETS----- 126 (260)
Q Consensus 61 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~----- 126 (260)
+..++...+.++++++.|+...+.. ......++..|...|.+..+.++|.-+.....+ .++..-..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3444444455666666665554321 111234555566666666666666555444322 12111111
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhh----cCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRV----LKCE-LGIEAYSCLIDGLCKIGKLETAWELFQSL 186 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (260)
....+.-++...|...+|.+.-++..+ .|-. ........+...|...|+.+.|+.-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 111233344455555555555554322 1211 11223344555556666666665555543
No 297
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.83 E-value=0.035 Score=36.69 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=25.2
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYS 79 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 79 (260)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444455555555555555544333344555555555555544444444443
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.81 E-value=0.21 Score=23.20 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 199 NIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 199 ~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
..+...+...|++++|.+.|++..+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.76 E-value=1.1 Score=31.39 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCccchHHHHHHHhccccHHHHH
Q 044047 35 EIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK---GIRPTVVTYNTLFHGLFEIHQVEHAL 110 (260)
Q Consensus 35 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 110 (260)
.-+.|.+.|-.+...+.--++.....+...|. ..|.++++.++.+..+. +-.+|+..+..|.+.+.+.++.+.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34677888888877765556666666666555 67889999999887663 34678999999999999999998874
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.71 E-value=0.26 Score=22.85 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=13.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDIN 49 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 49 (260)
.|..+...+...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.70 E-value=0.22 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSM 46 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 46 (260)
.+++.+...|...|++++|..++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 34455555555555555555555544
No 302
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.67 E-value=1.5 Score=29.81 Aligned_cols=133 Identities=15% Similarity=0.198 Sum_probs=68.6
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhc-
Q 044047 41 ELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS- 119 (260)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 119 (260)
++++.+.+.+++|+...+..++..+.+.|.+.. +.++...++-+|.......+-.+.. ....+.++=-.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 445555566677777777777777777776543 3334444555555544443322222 222233322222221
Q ss_pred CCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 120 DVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
+ ..+..++..+...|++-+|.++.+...... .+++ ..++.+..+.++...-..+++-...
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 134456666677777777777776643222 1222 3355555566665555555555444
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.65 E-value=0.23 Score=24.32 Aligned_cols=28 Identities=36% Similarity=0.460 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4556666666666666666666666543
No 304
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.44 E-value=1.1 Score=30.70 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhc---cCCHHHHHHHHH-------HHhhcCCCCchhhHHHHHHHHHhcC--
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCL---TGEIDRARELFV-------SMDINGCMHNVVTYNTLINGYCKTK-- 69 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~-- 69 (260)
+.|.+.++.-...+ |.|+..++....++.. ..+..++.++++ +....+ |....++..+..++...+
T Consensus 8 E~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhh
Confidence 45556666555544 4456655555544433 333333444443 333333 223455555555554433
Q ss_pred --C-------hHHHHHHHHHHHhcCCCCCccchHHHHHHH
Q 044047 70 --D-------VEESLNLYSEMLSKGIRPTVVTYNTLFHGL 100 (260)
Q Consensus 70 --~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (260)
+ +++|...|++..+ ..|+...|+.-+...
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 2 3444445554444 356777777666554
No 305
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.41 E-value=0.17 Score=25.61 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=11.8
Q ss_pred HHHHHHhcCchhHHHHHHHHHhh
Q 044047 236 LMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 236 l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+..+|...|+.+.|+++++++.+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555443
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.23 E-value=1.2 Score=27.30 Aligned_cols=63 Identities=6% Similarity=-0.020 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHH
Q 044047 140 YIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIH 203 (260)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (260)
+.-+..+-++.+.....-|++.+..+.+++|.+.+++..|.++++.++..- .+....|..++.
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 344677778888888889999999999999999999999999999887642 223336766654
No 307
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.17 E-value=3.6 Score=32.77 Aligned_cols=226 Identities=15% Similarity=0.205 Sum_probs=131.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCCC----CchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH--
Q 044047 24 STLIDGFCLTGEIDRARELFVSMDINGCM----HNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF-- 97 (260)
Q Consensus 24 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-- 97 (260)
..+...+.+ +.+++..+.+.+....+. .-..+|..++....+.++-..|.+.+.-+.-- .|+...-.-++
T Consensus 265 ~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls 340 (549)
T PF07079_consen 265 EPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLS 340 (549)
T ss_pred HHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcC
Confidence 334444444 556666666555433211 13457888888899999999998888776653 34443222221
Q ss_pred -----HHHh-c---cccHHHHHHHHHHHhhcCCCcchhhHHHHH---HHHHhcCc-HHHHHHHHHHhhhcCCCcCHHHHH
Q 044047 98 -----HGLF-E---IHQVEHALKLFDEMQHSDVAAETSTYNTFI---DGLCKNGY-IVEAAELFRTLRVLKCELGIEAYS 164 (260)
Q Consensus 98 -----~~~~-~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 164 (260)
+..+ . ..+...-+.+|+.....++... .....++ .-+-+.|. -++|+++++.+..-. +-|...-|
T Consensus 341 ~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n 418 (549)
T PF07079_consen 341 PKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECEN 418 (549)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHH
Confidence 1122 1 1123334556666655443221 1122222 33445555 778899988887643 33443333
Q ss_pred HHH----HHHH---hcCCHHHHHHHHHhhhhCCCCCch----hhHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCChh
Q 044047 165 CLI----DGLC---KIGKLETAWELFQSLPRVGLMPNV----VTYNIMIH--GFCNDGQMDKAHDLFLDMEAKGVAPNCV 231 (260)
Q Consensus 165 ~l~----~~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 231 (260)
.+. ..|. ....+..-..+-+.+.+.|++|-. ..-|.|.. .+..+|++.++.-.-..+.+ +.|++.
T Consensus 419 ~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~ 496 (549)
T PF07079_consen 419 IVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQ 496 (549)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHH
Confidence 222 2222 223445555555666677776643 23344433 34568899888766666555 688999
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 232 TFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
+|..+.-+.....++++|..++..+.
T Consensus 497 ~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 497 AYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999999999999999999998764
No 308
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.17 E-value=0.043 Score=36.21 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=77.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcC
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDG 209 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (260)
.++..+.+.+.+....++++.+...+...+....+.++..|++.+..++..++++.... .-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 46677778888889999999988766567788899999999999888888887772221 23346677888899
Q ss_pred ChHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 210 QMDKAHDLFLDMEAKGVA----PNCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
.++++..++.++....-. -....+...+..+.+.++.+-...+.+.
T Consensus 85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~ 134 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKY 134 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHH
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999988876543111 1223333344444455554444444433
No 309
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.15 E-value=3.9 Score=33.15 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=40.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFID 133 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (260)
|.....+++..+.....++-...+..+|..-| -+-..+..++++|... ..+....+|+++.+..+ .+...-..++.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33344444444444444444444555554432 1344444555555444 33444455555444432 12222223333
Q ss_pred HHHhcCcHHHHHHHHHHhh
Q 044047 134 GLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~ 152 (260)
.|-+ ++...+...|.++.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHH-hchhhHHHHHHHHH
Confidence 3322 44444444444443
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.15 E-value=2.8 Score=31.39 Aligned_cols=218 Identities=12% Similarity=0.047 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHcC--CCccH------HHHHHHHHHHhccC-CHHHHHHHHHHHhhc--------CCCCc-----hhhHH
Q 044047 2 DEASRLLDLMIQRG--VRPNA------FVYSTLIDGFCLTG-EIDRARELFVSMDIN--------GCMHN-----VVTYN 59 (260)
Q Consensus 2 ~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~-----~~~~~ 59 (260)
+.|..++.+..... ..|+. ..|+ +.......+ +++.|..++++..+. ...++ ..++.
T Consensus 10 ~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn-~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~ 88 (278)
T PF08631_consen 10 DLAEHMYSKAKDLLNSLDPDMAEELARVCYN-IGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILR 88 (278)
T ss_pred HHHHHHHHHhhhHHhcCCcHHHHHHHHHHHH-HHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHH
Confidence 44666666665532 12221 1233 233334456 888888777765432 11222 23567
Q ss_pred HHHHHHHhcCChH---HHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 044047 60 TLINGYCKTKDVE---ESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLC 136 (260)
Q Consensus 60 ~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (260)
.++.+|...+..+ +|.++++.+...... .+.++..-+..+.+.++.+.+.+.+.+|...- ......+..++..+.
T Consensus 89 ~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~ 166 (278)
T PF08631_consen 89 LLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIK 166 (278)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHH
Confidence 7888888877654 566677666554322 35666677777878899999999999998763 323445555555552
Q ss_pred h--cCcHHHHHHHHHHhhhcCCCcCHH-HHHHH----HHHHHhcCC------HHHHHHHHHhhhhC-CCCCchhhHH---
Q 044047 137 K--NGYIVEAAELFRTLRVLKCELGIE-AYSCL----IDGLCKIGK------LETAWELFQSLPRV-GLMPNVVTYN--- 199 (260)
Q Consensus 137 ~--~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l----~~~~~~~~~------~~~a~~~~~~~~~~-~~~~~~~~~~--- 199 (260)
. ......+...+..+....+.|... ....+ +-...+.++ .+....+++...+. +.+.+..+-.
T Consensus 167 ~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~ 246 (278)
T PF08631_consen 167 QLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIH 246 (278)
T ss_pred HHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 2 233455666666666555555554 11111 111122222 44444455533322 2223333322
Q ss_pred HH----HHHHHhcCChHHHHHHHHHHH
Q 044047 200 IM----IHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 200 ~l----~~~~~~~g~~~~a~~~~~~~~ 222 (260)
.+ ...+.+.++++.|.+.|+-..
T Consensus 247 ~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 247 TLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 233456889999999988544
No 311
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.99 E-value=4.7 Score=33.62 Aligned_cols=180 Identities=17% Similarity=0.109 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhhcCCCCchhhHHHHHHH-----HHhcCChHHHHHHHHHHHh-------cCCCCCccchHHHHHHHhcc
Q 044047 36 IDRARELFVSMDINGCMHNVVTYNTLING-----YCKTKDVEESLNLYSEMLS-------KGIRPTVVTYNTLFHGLFEI 103 (260)
Q Consensus 36 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 103 (260)
...|..+++...+.| +...-..+..+ +....|.+.|+.+++...+ .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888887776 33333333332 3345689999999998877 44 344666777777764
Q ss_pred c-----cHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh-cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHH--hcCC
Q 044047 104 H-----QVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK-NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLC--KIGK 175 (260)
Q Consensus 104 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 175 (260)
. +.+.|..++...-..| .|+.......+..... ..+...|.++|...-..| .+....+..++.... ...+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCC
Confidence 3 5677999999988887 4444443333322222 246789999999988877 223222222222222 3457
Q ss_pred HHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044047 176 LETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKG 225 (260)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 225 (260)
...|..++.+..+.|. |....-...+..+.. +.++.+.-.+..+.+.|
T Consensus 380 ~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 8899999999888872 221111122222233 66666666655555443
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.81 E-value=2.3 Score=29.61 Aligned_cols=133 Identities=6% Similarity=0.035 Sum_probs=74.5
Q ss_pred CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhH--HHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH--HHHH
Q 044047 89 TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTY--NTFIDGLCKNGYIVEAAELFRTLRVLKCELGI--EAYS 164 (260)
Q Consensus 89 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 164 (260)
-...|..++.... .+.+ +.....+.+...+....-.++ ..+...+...+++++|...++.........+. .+--
T Consensus 53 AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 53 ASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 3445555555543 2233 444444555443211111111 12345567788888888888766643211111 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044047 165 CLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKG 225 (260)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 225 (260)
.+.+.....|.+++|...++.....+. .......-...+...|+-++|..-|......+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 345666778888888888877666432 22233444567778888888888888887764
No 313
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=92.79 E-value=2.5 Score=31.28 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=47.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHH----
Q 044047 61 LINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLC---- 136 (260)
Q Consensus 61 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 136 (260)
=|++++..++|.+++...-+.-+..-+....+....|-.|.+.+.+..+.++-..-.+..-.-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3566777777777766555444332222334444455566777777766666555443211122233555555443
Q ss_pred -hcCcHHHHHHHH
Q 044047 137 -KNGYIVEAAELF 148 (260)
Q Consensus 137 -~~~~~~~a~~~~ 148 (260)
=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 357777777665
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.78 E-value=2 Score=28.85 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=27.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCccchH-HHHHHHhccccHHHHHHHHHHHhhc
Q 044047 64 GYCKTKDVEESLNLYSEMLSKGIRPTVVTYN-TLFHGLFEIHQVEHALKLFDEMQHS 119 (260)
Q Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (260)
.-.+.++.+++..++.-+.-. .|...... .-...+...|++.+|..+|+.+...
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 334455666666666666543 23222221 1223345666666666666666544
No 315
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.42 E-value=5.4 Score=32.86 Aligned_cols=185 Identities=14% Similarity=0.020 Sum_probs=116.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFID 133 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (260)
...+|+..+..-...|+++.+.-++++..-. +..-...|-..+.-....|+.+-+..++....+-.++-.+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567888888888999999999988887542 222334455555555555888888888877666554433333333333
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCCCcC-HHHHHHHHHHHHhcCCHHHHH---HHHHhhhhCCCCCchhhHHHHHH-----H
Q 044047 134 GLCKNGYIVEAAELFRTLRVLKCELG-IEAYSCLIDGLCKIGKLETAW---ELFQSLPRVGLMPNVVTYNIMIH-----G 204 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~-----~ 204 (260)
..-..|++..|..+++.+...- |+ ...-..-+....+.|+.+.+. .++........ +......+.- .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHH
Confidence 4455779999999999988764 43 333333455666778888777 33333322211 2222222222 2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 044047 205 FCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNN 244 (260)
Q Consensus 205 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 244 (260)
+.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23467889999999998886 5667777777776665554
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.35 E-value=0.28 Score=22.50 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=15.0
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhh
Q 044047 235 TLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 235 ~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
.+..++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 445556666666666666666654
No 317
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.93 E-value=3.4 Score=29.48 Aligned_cols=164 Identities=16% Similarity=0.045 Sum_probs=94.2
Q ss_pred CCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchH
Q 044047 16 VRPN-AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYN 94 (260)
Q Consensus 16 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (260)
+.|+ +.+||.+.--+...|+++.|.+.|+...+.+ |....++..-.-++.--|+++-|.+-+.+.-+.... | .|.
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~-D--PfR 169 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN-D--PFR 169 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC-C--hHH
Confidence 4454 6789999999999999999999999998876 323333322233344568899888877776655322 1 222
Q ss_pred HH-HHHHhccccHHHHHHHH-HHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC------CcCHHHHHHH
Q 044047 95 TL-FHGLFEIHQVEHALKLF-DEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC------ELGIEAYSCL 166 (260)
Q Consensus 95 ~l-~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l 166 (260)
++ +-.-.+.-++.+|..-+ ++..+. ..+-..++ ++..|...=..+. +++.+..... ..=..+|--+
T Consensus 170 ~LWLYl~E~k~dP~~A~tnL~qR~~~~--d~e~WG~~-iV~~yLgkiS~e~---l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 170 SLWLYLNEQKLDPKQAKTNLKQRAEKS--DKEQWGWN-IVEFYLGKISEET---LMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhc--cHhhhhHH-HHHHHHhhccHHH---HHHHHHhhccchHHHHHHHHHHHHHH
Confidence 22 21222334566665433 333322 12222232 2333322222222 2222222110 1123577788
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhC
Q 044047 167 IDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
.+.+...|+.++|..+|+-....
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 89999999999999999988765
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.87 E-value=0.33 Score=21.17 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=10.1
Q ss_pred HHHHHHHhcCchhHHHHHHH
Q 044047 235 TLMLGCIRNNETSKVVELLH 254 (260)
Q Consensus 235 ~l~~~~~~~~~~~~a~~~~~ 254 (260)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555443
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.72 E-value=0.61 Score=21.60 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 232 TFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
+|..+...+...|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555543
No 320
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.46 E-value=3.3 Score=29.56 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcC--CCcchhhHHHHHHH
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSD--VAAETSTYNTFIDG 134 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 134 (260)
|.+.-++.+.+.+..++++...++-++..+. |..+-..+++.++-.|+|++|..-++-.-... ..+...+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455667777888888888888877776433 56666778888888999988887766654332 23345566666654
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.43 E-value=2.8 Score=29.91 Aligned_cols=77 Identities=13% Similarity=0.029 Sum_probs=56.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCccchHHHHHH
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKG--IRPTVVTYNTLFHG 99 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 99 (260)
+.+..+..+.+.++.++++...++-.+.. |.+...-..++..++-.|++++|..-++-.-... ..+-...|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556778888999999999988877665 6677788889999999999999988777665432 12234455555543
No 322
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.41 E-value=0.65 Score=23.51 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=10.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 044047 201 MIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 201 l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444444555555554444443
No 323
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.40 E-value=1.7 Score=32.35 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHH
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEM 116 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 116 (260)
+++...+.|..+|.+.+|.++.++...-.. .+...+-.++..+...|+--.+.+.++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 455666778888888888888888777533 36677778888888888877777777666
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.31 E-value=3 Score=27.66 Aligned_cols=52 Identities=17% Similarity=-0.022 Sum_probs=24.2
Q ss_pred ccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 044047 102 EIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (260)
..++++++..+++.|.-.. |.....-..-.-.+...|++.+|.++|+++...
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3455555555555554432 111112222223344556666666666655543
No 325
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.29 E-value=3.8 Score=28.82 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=36.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC----ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcH
Q 044047 66 CKTKDVEESLNLYSEMLSKGIRPT----VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYI 141 (260)
Q Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 141 (260)
.+.|++++|.+-|...+..-.... ...|..-.-++.+.+.++.|+.-....++.+ +.......--..+|.+...+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhH
Confidence 344555555555555444311111 1122222334445555555555544444443 21112222223345555555
Q ss_pred HHHHHHHHHhhhc
Q 044047 142 VEAAELFRTLRVL 154 (260)
Q Consensus 142 ~~a~~~~~~~~~~ 154 (260)
++|+.-|+.+.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.27 E-value=11 Score=34.05 Aligned_cols=77 Identities=9% Similarity=0.112 Sum_probs=44.2
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhCCCCCch--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 044047 167 IDGLCKIGKLETAWELFQSLPRVGLMPNV--VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNN 244 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 244 (260)
+.+|..+|+|.+|..+..++... -+. .+-..|+.-+...+++-+|-++..+.... ....+..+++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 44555556666666555544431 121 12245666777788888888887776653 123344556666
Q ss_pred chhHHHHHHH
Q 044047 245 ETSKVVELLH 254 (260)
Q Consensus 245 ~~~~a~~~~~ 254 (260)
.|++|.++..
T Consensus 1041 ~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1041 EWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHHH
Confidence 6777766544
No 327
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.26 E-value=4.9 Score=30.00 Aligned_cols=136 Identities=10% Similarity=0.061 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHh-cCCCCCccchHHHHHHHhc-ccc-HHHHHHHHHHHhh-cCCCcchhhHHHHHHHHHhcCcHHHHH
Q 044047 70 DVEESLNLYSEMLS-KGIRPTVVTYNTLFHGLFE-IHQ-VEHALKLFDEMQH-SDVAAETSTYNTFIDGLCKNGYIVEAA 145 (260)
Q Consensus 70 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (260)
.+.+|+++|+.... ..+-.|..+...+++.... .+. .....++.+-+.. .+..++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 45677888874322 2355577788888877765 222 2222233333332 234677888899999999999999999
Q ss_pred HHHHHhhhc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHh-----hhhCCCCCchhhHHHHHHHH
Q 044047 146 ELFRTLRVL-KCELGIEAYSCLIDGLCKIGKLETAWELFQS-----LPRVGLMPNVVTYNIMIHGF 205 (260)
Q Consensus 146 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 205 (260)
+++...... +..-|...|..++......|+..-...+..+ +++.++..+...-..+-+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999887765 4567888999999999999999998888876 35556666655554444443
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.07 E-value=0.87 Score=21.04 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
+|..+...+...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777778888888888777665
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.62 E-value=6.7 Score=32.59 Aligned_cols=135 Identities=15% Similarity=0.056 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHH
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGL 100 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (260)
..-+.+++.+.+.|-.++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 35566777777777777776543 22211 2234456788888888776642 567789999999
Q ss_pred hccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 044047 101 FEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAW 180 (260)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 180 (260)
...+++..|.+.|..... |..|+-.+...|+-+....+-....+.| ..+ ....+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHH
Confidence 999999999999887543 4466677777787776666666666655 333 2334566789999998
Q ss_pred HHHHhhhh
Q 044047 181 ELFQSLPR 188 (260)
Q Consensus 181 ~~~~~~~~ 188 (260)
+++..-.+
T Consensus 742 ~lLi~t~r 749 (794)
T KOG0276|consen 742 ELLISTQR 749 (794)
T ss_pred HHHHhcCc
Confidence 88766543
No 330
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=90.57 E-value=1.4 Score=28.09 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=44.7
Q ss_pred HHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 044047 178 TAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLML 238 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 238 (260)
+..+-+..+....+.|++.....-++++.+-+++..|.++|+-++.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 55666677777778889888999999999999999999999888765 3333334555553
No 331
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.39 E-value=6.7 Score=30.12 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=15.1
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhCC
Q 044047 167 IDGLCKIGKLETAWELFQSLPRVG 190 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~ 190 (260)
.....++|..+.|..+++.+.+.+
T Consensus 161 ~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 161 CRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHCCchHHHHHHHHHHHHHH
Confidence 334456677777777777766654
No 332
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.37 E-value=4.8 Score=28.37 Aligned_cols=88 Identities=20% Similarity=0.104 Sum_probs=58.4
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcc-----hhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcC
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAE-----TSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIG 174 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (260)
+...|++++|..-|...+..- ++. ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 456788888888888777653 332 2345555566777888888887777766654 223333344456777788
Q ss_pred CHHHHHHHHHhhhhC
Q 044047 175 KLETAWELFQSLPRV 189 (260)
Q Consensus 175 ~~~~a~~~~~~~~~~ 189 (260)
+++.|+.=|..+...
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 888888888887775
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.36 E-value=6.1 Score=32.82 Aligned_cols=152 Identities=15% Similarity=0.172 Sum_probs=104.7
Q ss_pred HhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHH
Q 044047 30 FCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHA 109 (260)
Q Consensus 30 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 109 (260)
..-.|+++.|..++..+. ...-+.++..+-++|-.++|+++- ..|+ .-| ....+.|+.+.|
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d-~rF----elal~lgrl~iA 656 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPD-QRF----ELALKLGRLDIA 656 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChh-hhh----hhhhhcCcHHHH
Confidence 345678888877554433 334456667777778777776542 2222 122 334577999999
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 110 LKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
.++..+. .+..-|..|..+....+++..|.+.|..... |..|+-.+...|+.+....+-....+.
T Consensus 657 ~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 8887663 3456799999999999999999999887653 456777888888888777777777777
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 190 GLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
|.. |. ...+|...|+++++.+++..-
T Consensus 722 g~~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 GKN-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccc-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 632 32 233556789999988887654
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.25 E-value=14 Score=33.48 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=48.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhc
Q 044047 131 FIDGLCKNGYIVEAAELFRTLRVLKCELGIE--AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCND 208 (260)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (260)
.+.+|..+|+|.+|..+...+.. ..+.. +-..|+.-+...++.-+|-++..+.... | ...+..+++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhH
Confidence 44555566666666655554432 11221 1245677777888888887777766542 1 2334456677
Q ss_pred CChHHHHHHHHHHH
Q 044047 209 GQMDKAHDLFLDME 222 (260)
Q Consensus 209 g~~~~a~~~~~~~~ 222 (260)
..+++|.++.....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 78888888776544
No 335
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=90.14 E-value=2.9 Score=25.56 Aligned_cols=86 Identities=10% Similarity=0.122 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHH
Q 044047 35 EIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFD 114 (260)
Q Consensus 35 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 114 (260)
..++|..+-+-+...+ .....+--+-+..+...|++++|..+.+.+ ..||...|..|. -.+.|..+.+..-+.
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHH
Confidence 3455555555554433 112222223344556667777777666554 356666665553 335566666666666
Q ss_pred HHhhcCCCcchhhH
Q 044047 115 EMQHSDVAAETSTY 128 (260)
Q Consensus 115 ~~~~~~~~~~~~~~ 128 (260)
.+..+| .|....|
T Consensus 93 rla~sg-~p~lq~F 105 (115)
T TIGR02508 93 RLAASG-DPRLQTF 105 (115)
T ss_pred HHHhCC-CHHHHHH
Confidence 666665 3433333
No 336
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=90.03 E-value=6.4 Score=29.28 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=63.2
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHH---
Q 044047 95 TLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLC--- 171 (260)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 171 (260)
.=|.+++..++|.+++...-+.-+.--+..+.+....|-.|.+.+++..+.++-..-....-.-+...|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 45678889999999988766654332233445667777889999999998888877665433334445777776665
Q ss_pred --hcCCHHHHHHHH
Q 044047 172 --KIGKLETAWELF 183 (260)
Q Consensus 172 --~~~~~~~a~~~~ 183 (260)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 459999999887
No 337
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=89.59 E-value=1.4 Score=24.24 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 044047 59 NTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 59 ~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
-.++.++...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444455555444444443
No 338
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.52 E-value=5.2 Score=30.70 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=53.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC-CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcH
Q 044047 63 NGYCKTKDVEESLNLYSEMLSKGIRP-TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYI 141 (260)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 141 (260)
.-|.++|.+++|+.+|...... .| +++++..-..+|.+..++..|..-.......+ ..-...|+--+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 3467788888888888776654 34 77788777888888888777666555554332 11222333333333344555
Q ss_pred HHHHHHHHHhhhc
Q 044047 142 VEAAELFRTLRVL 154 (260)
Q Consensus 142 ~~a~~~~~~~~~~ 154 (260)
.+|.+-++.....
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 5555555555443
No 339
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.51 E-value=9.6 Score=30.57 Aligned_cols=249 Identities=12% Similarity=0.188 Sum_probs=128.6
Q ss_pred ChhHHHHHHHHHHcCCCccHH------HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHH--HHhcCChH
Q 044047 1 MDEASRLLDLMIQRGVRPNAF------VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLING--YCKTKDVE 72 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~ 72 (260)
+++|..+|.++.+.- ..++. .-+.++++|.. ++.+.....+....+.. | ...|-.+..+ +.+.+++.
T Consensus 22 ~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 22 FQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred hhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhhHH
Confidence 356777877776642 22222 23456666653 45666665555555442 2 3334444333 45678888
Q ss_pred HHHHHHHHHHhc--CCCC------------CccchHHHHHHHhccccHHHHHHHHHHHhhcC----CCcchhhHHHHHHH
Q 044047 73 ESLNLYSEMLSK--GIRP------------TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSD----VAAETSTYNTFIDG 134 (260)
Q Consensus 73 ~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~ 134 (260)
+|++.+....+. +..| |-..=+..+.++...|++.++..+++++...= ...+..+|+.++-.
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 988888776654 2221 11112456677788999999998888876543 33677888876666
Q ss_pred HHhcCc---------------HHHHHHHHHHhhhc------CCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHhhhhCCC
Q 044047 135 LCKNGY---------------IVEAAELFRTLRVL------KCELGIEAYSCLIDGLCKIG--KLETAWELFQSLPRVGL 191 (260)
Q Consensus 135 ~~~~~~---------------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 191 (260)
+++.=- ++.+.=..+++... .+-|....+..++....-.. +..--.+++..-.+.-+
T Consensus 177 lsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv 256 (549)
T PF07079_consen 177 LSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYV 256 (549)
T ss_pred HhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhcc
Confidence 554211 11111112222211 12344444444444333221 12222233333333334
Q ss_pred CCchh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----ChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 192 MPNVV-TYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAP----NCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 192 ~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
.|+.. ....+...+.. +.+++..+.+.+....+.+ -..+|..++....+.++...|.+.+.-+
T Consensus 257 ~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 257 HPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred CCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45432 22233333333 5555655555554332111 2356777888888888888888777654
No 340
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.09 E-value=2.2 Score=24.75 Aligned_cols=46 Identities=7% Similarity=0.070 Sum_probs=21.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCchhHHHHH
Q 044047 207 NDGQMDKAHDLFLDMEAKGVAPN--CVTFNTLMLGCIRNNETSKVVEL 252 (260)
Q Consensus 207 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~ 252 (260)
..++.++|+..|...++.-..|. ..++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554421111 23344555555555555555443
No 341
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=88.68 E-value=3.2 Score=29.03 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=25.2
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 192 MPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 192 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
.|++..|..++..+...|+.++|.+...++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 477777777777788888888887777777763
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.30 E-value=15 Score=31.24 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=103.7
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCC--ccchHHHHHHHh-ccccHHHHHHHHHHHhhcCCCcch--
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLS-KGIRPT--VVTYNTLFHGLF-EIHQVEHALKLFDEMQHSDVAAET-- 125 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-- 125 (260)
+.+...|..+|.. |++.++-+.+ ..+.|. ..++-.+...+. ...+.+.|...+++.....-.++.
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3455666666654 5555555553 333332 223334444444 567788888888776443222211
Q ss_pred ---hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC----cCHHHHHHH-HHHHHhcCCHHHHHHHHHhhhhCC---CCCc
Q 044047 126 ---STYNTFIDGLCKNGYIVEAAELFRTLRVLKCE----LGIEAYSCL-IDGLCKIGKLETAWELFQSLPRVG---LMPN 194 (260)
Q Consensus 126 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~ 194 (260)
..-..++..+.+.+... |.+.+++.++.--. +-...|.-+ +..+...++...|.+.++.+.... ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 11224455565555555 77777765543211 122222322 222323378888888887765542 1223
Q ss_pred hhhHHHHHHHHH--hcCChHHHHHHHHHHHhCC---------CCCChhhHHHHHHHHH--hcCchhHHHHHHHHHhh
Q 044047 195 VVTYNIMIHGFC--NDGQMDKAHDLFLDMEAKG---------VAPNCVTFNTLMLGCI--RNNETSKVVELLHRMDE 258 (260)
Q Consensus 195 ~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~---------~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~ 258 (260)
...+-.++.+.. +.+..+++.+.++++.... ..|-..+|..+++.++ ..|+++.+.+.++++.+
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444433 4565677777777664321 1334556666665554 56777777777776653
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.05 E-value=5.9 Score=26.34 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=31.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCC-CCccchHHHHHHHhccccHHHHHHHHHHHhhcC
Q 044047 66 CKTKDVEESLNLYSEMLSKGIR-PTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
...++.+++..+++.|.--.+. +...++.. ..+...|+|++|.++|+.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 3467777777777777653221 12223332 34556777777777777776654
No 344
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.69 E-value=5.5 Score=25.59 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 142 VEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
-+..+-++.+...++-|++.....-+++|.+.+++..|.++|+.++..
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356677788888888999999999999999999999999999988764
No 345
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.38 E-value=7.2 Score=29.99 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLE 177 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (260)
.-|.+.|.+++|+..|..-.... +-++.++..-..+|.+...+..|+.-.......+ ..-...|+.-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 45778899999999998876654 4478888888889999888887777666655443 222334555555555556666
Q ss_pred HHHHHHHhhhhC
Q 044047 178 TAWELFQSLPRV 189 (260)
Q Consensus 178 ~a~~~~~~~~~~ 189 (260)
+|.+=++.....
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 666666665553
No 346
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.88 E-value=11 Score=28.03 Aligned_cols=28 Identities=25% Similarity=0.055 Sum_probs=18.9
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044047 158 LGIEAYSCLIDGLCKIGKLETAWELFQS 185 (260)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (260)
-++.....+...|.+.|++.+|+..|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 4566777788888888888888776643
No 347
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=86.70 E-value=3.5 Score=22.67 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 044047 4 ASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMD 47 (260)
Q Consensus 4 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 47 (260)
..++++.++.. +.|-.-.-.++.++.+.|++++|.++++.+.
T Consensus 9 ~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 9 LEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444433 3455555556666667777777766666654
No 348
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=86.56 E-value=5.4 Score=26.51 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC
Q 044047 6 RLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTK 69 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 69 (260)
++...+.+.|+++++. =..++..+.+.++.-.|.++++.+.+.+.+.+..|...-+..+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3455666677766654 33466667766666777788877777664444554444444444444
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.52 E-value=22 Score=31.22 Aligned_cols=223 Identities=13% Similarity=0.099 Sum_probs=120.8
Q ss_pred HhccCCHHHHHHHHHHHhhcCCCCch-------hhHHHHH-HHHHhcCChHHHHHHHHHHHhc----CCCCCccchHHHH
Q 044047 30 FCLTGEIDRARELFVSMDINGCMHNV-------VTYNTLI-NGYCKTKDVEESLNLYSEMLSK----GIRPTVVTYNTLF 97 (260)
Q Consensus 30 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 97 (260)
.....++.+|..++.++...-..|+. ..|+.+- ......|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 44578899999999887554212221 1233332 2344568899998888877654 1223455666777
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcchhh---HHHH--HHHHHhcCcHHHH--HHHHHHhhhc---CCC---cCHHHHH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAETST---YNTF--IDGLCKNGYIVEA--AELFRTLRVL---KCE---LGIEAYS 164 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~~~a--~~~~~~~~~~---~~~---~~~~~~~ 164 (260)
.+..-.|+.++|..+.++..+....-+... |..+ ...+...|+...+ ...+...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 778888999999998887765422223222 2222 2334556643332 2233322211 101 2233445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh----hhCCCCCchhh--HHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CChhhHH
Q 044047 165 CLIDGLCKIGKLETAWELFQSL----PRVGLMPNVVT--YNIMIHGFCNDGQMDKAHDLFLDMEAKGVA----PNCVTFN 234 (260)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~ 234 (260)
.+..++.+ .+.+..-...- ......|-... +..|+......|+.++|...+.++...... ++..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 55555554 33333222222 22211222222 236778888999999999999998765322 2322222
Q ss_pred HHHHH--HHhcCchhHHHHHHHH
Q 044047 235 TLMLG--CIRNNETSKVVELLHR 255 (260)
Q Consensus 235 ~l~~~--~~~~~~~~~a~~~~~~ 255 (260)
..+.. ....|+...+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 33322 2356777777766554
No 350
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.25 E-value=20 Score=30.52 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=111.0
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHh-hcCCCCc--hhhHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCCCcc---
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMD-INGCMHN--VVTYNTLINGYC-KTKDVEESLNLYSEMLSKGIRPTVV--- 91 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--- 91 (260)
+...|..||.. |+..++.+. +..++|. ..++-.+...+. ...+++.|...+++.....-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 44556666543 445555555 3333343 334555566655 5688999999999876543332222
Q ss_pred --chHHHHHHHhccccHHHHHHHHHHHhhcC----CCcchhhHHHH-HHHHHhcCcHHHHHHHHHHhhhcC---CCcCHH
Q 044047 92 --TYNTLFHGLFEIHQVEHALKLFDEMQHSD----VAAETSTYNTF-IDGLCKNGYIVEAAELFRTLRVLK---CELGIE 161 (260)
Q Consensus 92 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 161 (260)
.-..++..+.+.+... |.+.+++..+.- ..+-...|..+ +..+...+++..|.+.++.+.... ..|...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 1234566666666655 888888765432 22223344444 333333479999999998876443 234444
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHhhhhCC---------CCCchhhHHHHHHHHH--hcCChHHHHHHHHHHH
Q 044047 162 AYSCLIDGLC--KIGKLETAWELFQSLPRVG---------LMPNVVTYNIMIHGFC--NDGQMDKAHDLFLDME 222 (260)
Q Consensus 162 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 222 (260)
++..++.+.. +.+..+++.+.++.+.... ..|...+|..+++.++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555544 4455666777776653221 1234567777776655 5777777777666553
No 351
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.87 E-value=15 Score=28.80 Aligned_cols=57 Identities=19% Similarity=0.101 Sum_probs=35.8
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 044047 167 IDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFC-NDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 223 (260)
+..+.+.|.+..|.++.+-+......-|+......|..|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4566677777777777777777654435555555555554 56666666666665544
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.64 E-value=13 Score=30.92 Aligned_cols=88 Identities=10% Similarity=0.113 Sum_probs=46.6
Q ss_pred hccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 044047 101 FEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAW 180 (260)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 180 (260)
.-.|+...|...+.........-.......+.....+.|-..+|-.++....... ...+-++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3456666666665554332211122233444555555555556666665554443 333445555666666666667776
Q ss_pred HHHHhhhhC
Q 044047 181 ELFQSLPRV 189 (260)
Q Consensus 181 ~~~~~~~~~ 189 (260)
+.|+++.+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 666666554
No 353
>PHA02875 ankyrin repeat protein; Provisional
Probab=85.28 E-value=17 Score=28.96 Aligned_cols=202 Identities=11% Similarity=0.015 Sum_probs=92.9
Q ss_pred HHHHHHHHcCCCccHHH--HHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchh--hHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 6 RLLDLMIQRGVRPNAFV--YSTLIDGFCLTGEIDRARELFVSMDINGCMHNVV--TYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++++.+.+.|..|+... ..+.+...+..|+.+-+. .+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD-- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH--
Confidence 56677777777665432 234455566777776443 334455444322 12234555667788766555443
Q ss_pred HhcCCCCCc---cchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhh--HHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 044047 82 LSKGIRPTV---VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETST--YNTFIDGLCKNGYIVEAAELFRTLRVLKC 156 (260)
Q Consensus 82 ~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (260)
.|...+. ..-.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|+.+-+..+++.-....
T Consensus 90 --~~~~~~~~~~~~g~tpL~~A~~~~~~~iv----~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~- 162 (413)
T PHA02875 90 --LGKFADDVFYKDGMTPLHLATILKKLDIM----KLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD- 162 (413)
T ss_pred --cCCcccccccCCCCCHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-
Confidence 3322111 1112334445556666433 34444454433211 1223444456777766555544321111
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhh---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 044047 157 ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVT---YNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN 229 (260)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 229 (260)
..+..-.+.+ ...+..|+.+-+.. +.+.|..++... ...++...+..|+.+- .+.+.+.|..++
T Consensus 163 ~~d~~g~TpL-~~A~~~g~~eiv~~----Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n 229 (413)
T PHA02875 163 IEDCCGCTPL-IIAMAKGDIAICKM----LLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCN 229 (413)
T ss_pred CCCCCCCCHH-HHHHHcCCHHHHHH----HHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcc
Confidence 1112222222 23345566654443 444554444221 1234443455666553 334445555554
No 354
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.17 E-value=2.1 Score=18.61 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 044047 198 YNIMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 198 ~~~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
|..+...+...|+++.|...++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444555555555555555443
No 355
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.10 E-value=8.9 Score=25.45 Aligned_cols=81 Identities=14% Similarity=0.247 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCccchHHHHHHHhcccc-HHHHHHHHHHHhhcCCCcchhhHHHH
Q 044047 58 YNTLINGYCKTKDVEESLNLYSEMLSKG-----IRPTVVTYNTLFHGLFEIHQ-VEHALKLFDEMQHSDVAAETSTYNTF 131 (260)
Q Consensus 58 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (260)
.+.++.-....+++...+++++.+..-. -..+...|++++.+.++... .--+..+|.-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566666666677777777776663211 01245566777777655554 33455666666666666667777777
Q ss_pred HHHHHhc
Q 044047 132 IDGLCKN 138 (260)
Q Consensus 132 ~~~~~~~ 138 (260)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7666543
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.02 E-value=4.5 Score=23.49 Aligned_cols=47 Identities=6% Similarity=0.004 Sum_probs=26.6
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCc--hhhHHHHHHHHHhcCChHHHHHHH
Q 044047 172 KIGKLETAWELFQSLPRVGLMPN--VVTYNIMIHGFCNDGQMDKAHDLF 218 (260)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 218 (260)
..++.++|+..|....+.-..+. -.++..++.+++..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655432221 234556666666777666665543
No 357
>PHA02875 ankyrin repeat protein; Provisional
Probab=84.68 E-value=19 Score=28.79 Aligned_cols=183 Identities=17% Similarity=0.098 Sum_probs=84.9
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCchhh--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc--chHHHHHHHhcc
Q 044047 28 DGFCLTGEIDRARELFVSMDINGCMHNVVT--YNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVV--TYNTLFHGLFEI 103 (260)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 103 (260)
...++.|+.+.+..++ +.|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+......
T Consensus 7 ~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3344567776555544 4555554322 234455556677765 344445566555432 123345566677
Q ss_pred ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHH---HHHHHHHHHHhcCCHHHHH
Q 044047 104 HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIE---AYSCLIDGLCKIGKLETAW 180 (260)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~ 180 (260)
|+.+.+..+++.-....-..+.... ..+...+..|+.+-+..+ .+.|..++.. ..+ .+...+..|+.+-+.
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~iv~~L----l~~gad~~~~~~~g~t-pLh~A~~~~~~~~v~ 152 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKLDIMKLL----IARGADPDIPNTDKFS-PLHLAVMMGDIKGIE 152 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHHHHHHH----HhCCCCCCCCCCCCCC-HHHHHHHcCCHHHHH
Confidence 8887766665432111000111111 233344456666544443 3444443321 122 334445677776655
Q ss_pred HHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 044047 181 ELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNC 230 (260)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 230 (260)
.+++.-..... .|..-.+.+. ..+..|+.+ +.+.+.+.|..|+.
T Consensus 153 ~Ll~~g~~~~~-~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~ 196 (413)
T PHA02875 153 LLIDHKACLDI-EDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDY 196 (413)
T ss_pred HHHhcCCCCCC-CCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCc
Confidence 55543222111 1222222333 334566655 34445566665543
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.39 E-value=7.3 Score=23.92 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|..|-+.+...+-. ...+--+-+..+...|++++|..+.+.+ ..||...|-.+-.. +.|-.+++..-+.++
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 4677777777765422 2233333455677899999999887765 37888888777654 667777777777777
Q ss_pred HhcCCCCCccchH
Q 044047 82 LSKGIRPTVVTYN 94 (260)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (260)
..+|. |....|.
T Consensus 95 a~sg~-p~lq~Fa 106 (115)
T TIGR02508 95 AASGD-PRLQTFV 106 (115)
T ss_pred HhCCC-HHHHHHH
Confidence 77653 3444443
No 359
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.29 E-value=12 Score=31.24 Aligned_cols=104 Identities=16% Similarity=0.014 Sum_probs=72.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHH
Q 044047 63 NGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIV 142 (260)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 142 (260)
-.....|+...|...+.......+.-..+....|.....+.|..-.|-.++.+..... ...+.++..+.+++....+.+
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhH
Confidence 3344568888888888777654333344555566677777777888888887766554 445667788889999999999
Q ss_pred HHHHHHHHhhhcCCCcCHHHHHHHHH
Q 044047 143 EAAELFRTLRVLKCELGIEAYSCLID 168 (260)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (260)
.|++.|+...... +.++..-+.+..
T Consensus 694 ~a~~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 694 GALEAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 9999999887664 444554444443
No 360
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.25 E-value=15 Score=27.54 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=14.7
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcc
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAE 124 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 124 (260)
+-..+.+++++|+..+.++...|+..+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~d 37 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKD 37 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChh
Confidence 334455556666666666655554444
No 361
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.73 E-value=9.4 Score=28.05 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh----cC-CCCCccchHHHHHHHhccccHHHHHHHHHHH
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLS----KG-IRPTVVTYNTLFHGLFEIHQVEHALKLFDEM 116 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 116 (260)
..--.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.-++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344566777888888888888877642 23 2334555666777777888887777665444
No 362
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=83.54 E-value=8.4 Score=23.97 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=54.6
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHH
Q 044047 32 LTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALK 111 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 111 (260)
-....++|..+.+-+...+ .....+--+-+..+...|++++|+ . . ......||...|..| +-.+.|-.+++..
T Consensus 18 G~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~AL--l-~-~~~~~~pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEAL--L-L-PQCHCYPDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHH--H-H-HTTS--GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH--H-h-cccCCCccHHHHHHH--HHHhhccHHHHHH
Confidence 3456788888888887775 233334444556778889999982 1 1 222346777777665 4457888888888
Q ss_pred HHHHHhhcCCCcchhhH
Q 044047 112 LFDEMQHSDVAAETSTY 128 (260)
Q Consensus 112 ~~~~~~~~~~~~~~~~~ 128 (260)
.+.++..+| .|....|
T Consensus 91 ~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 91 RLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHHCT-S-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 888887776 4544444
No 363
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=83.53 E-value=12 Score=25.90 Aligned_cols=22 Identities=5% Similarity=0.190 Sum_probs=14.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 044047 62 INGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
+..|.+.|.+++|.+++++..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456667777777777776665
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.37 E-value=17 Score=27.39 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCCChhhH
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDME-----AKGVAPNCVTF 233 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~ 233 (260)
+++.....|..+|.+.+|.++.+.....+ +.+...+..++..+...|+--.+..-++++. +.|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44555677778888888888887777654 3456677777788888887666666666553 23665554443
No 365
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=83.13 E-value=8.8 Score=23.89 Aligned_cols=86 Identities=12% Similarity=0.039 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHH
Q 044047 70 DVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFR 149 (260)
Q Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (260)
..++|..+.+-+...+.. ...+--+-+..+.+.|++++| +..-... ..||...|..+ +-.+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 467777777777766432 223333344556677888887 2111111 24555554443 3457777777777777
Q ss_pred HhhhcCCCcCHHHH
Q 044047 150 TLRVLKCELGIEAY 163 (260)
Q Consensus 150 ~~~~~~~~~~~~~~ 163 (260)
++..+| .|....|
T Consensus 94 rla~~g-~~~~q~F 106 (116)
T PF09477_consen 94 RLASSG-SPELQAF 106 (116)
T ss_dssp HHCT-S-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 776655 4444333
No 366
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=82.97 E-value=6.9 Score=25.27 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=43.5
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMH-NVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
+.|+......+. |++.-+ .+.++|+.|...|+-. .+..|......+...|++++|.++|+.-
T Consensus 63 ~nD~RylkiWi~-ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 63 KNDERYLKIWIK-YADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp TT-HHHHHHHHH-HHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 446654444443 333322 8999999998877654 4667888999999999999999999753
No 367
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.90 E-value=14 Score=25.98 Aligned_cols=130 Identities=11% Similarity=0.042 Sum_probs=64.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHH-----HHHHHhccccHHHHHHHHHHHhhcCCCc--chh
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNT-----LFHGLFEIHQVEHALKLFDEMQHSDVAA--ETS 126 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ 126 (260)
-...|..++.... .+.. +.....+++.... ...+|.. +...+...+++++|...++......... ...
T Consensus 53 AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 53 ASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence 3444555555443 2222 4444455554431 1223322 2344556677777777666654321010 111
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG 190 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (260)
+-..|.+.....|.+++|+..++.....+. .......-...+...|+-++|+.-|......+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 122334455566777777777665553321 22223334556667777777777777666654
No 368
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=82.83 E-value=5.1 Score=22.33 Aligned_cols=49 Identities=8% Similarity=0.034 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK 67 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 67 (260)
|....++.++...++....++++..+.++...| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444556666666666666677777777666666 3455555555554443
No 369
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.58 E-value=54 Score=32.58 Aligned_cols=152 Identities=15% Similarity=0.016 Sum_probs=89.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC--CCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh
Q 044047 60 TLINGYCKTKDVEESLNLYSEMLSKGI--RPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK 137 (260)
Q Consensus 60 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (260)
.+..+-.+.+.+.+|+..+++-..... .....-|..+...|+..+++|.+..+...-.. .| ....-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHh
Confidence 455566677888888888887311100 11123334444478888888887777664111 12 23344455567
Q ss_pred cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHH-HHHHHHhcCChHHHHH
Q 044047 138 NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNI-MIHGFCNDGQMDKAHD 216 (260)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~ 216 (260)
.|++..|...|+.+.+.+ ++...+++-++......|.++......+...... .+....++. =+.+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 888888888888888765 4556677777777777777777776665554431 122222322 2334456666666555
Q ss_pred HHH
Q 044047 217 LFL 219 (260)
Q Consensus 217 ~~~ 219 (260)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 543
No 370
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.47 E-value=32 Score=29.83 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=81.2
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcc
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMH---NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEI 103 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (260)
++.+.+.+.+++|++..+..... .| ....+...+..+...|++++|-...-+|... +..-|.-.+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45566778888888877654332 33 3456778888888888888888877777654 344444444444444
Q ss_pred ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh-----------------hcCCCcCHHHHHHH
Q 044047 104 HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLR-----------------VLKCELGIEAYSCL 166 (260)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~~~~~l 166 (260)
++......+ +.......+...|..++..+.. .+...-.++..+.. +.. ..+...-..|
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~e~L 511 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALLEVL 511 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHHHHH
Confidence 433322211 1111111233445555544444 22222111111100 000 1122233447
Q ss_pred HHHHHhcCCHHHHHHHHHhhhh
Q 044047 167 IDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
+..|...+++..|..++-.+++
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHccChHHHHHHHHhccC
Confidence 8888889999999988877664
No 371
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.38 E-value=19 Score=27.12 Aligned_cols=21 Identities=38% Similarity=0.344 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 044047 164 SCLIDGLCKIGKLETAWELFQ 184 (260)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~ 184 (260)
.-++..+.+.|.+.+|..+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHH
Confidence 345666667777777666543
No 372
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.91 E-value=29 Score=28.94 Aligned_cols=189 Identities=14% Similarity=0.024 Sum_probs=121.5
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
++..+|+.-+..-.+.|+++.+.-+|+...-. +..=...|-..+......|+.+.|..++....+.-++-.+.+...-.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 35678888888889999999999999887531 12234566677777777799999988887776654443333333333
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHH---HHHHHhhhcCCCcCH--HHHHHHHH-HHH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAA---ELFRTLRVLKCELGI--EAYSCLID-GLC 171 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~--~~~~~l~~-~~~ 171 (260)
...-..|+...|..+++.+...- +.-...-..-+....+.|+.+.+. .++.........+.. ..+....+ .+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 33446789999999999988764 333333334455667788888877 444443332222221 11222221 234
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcC
Q 044047 172 KIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDG 209 (260)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (260)
-.++.+.|..++.++.+. .+++...|..++......+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 467899999999998876 4556777777777666544
No 373
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=81.71 E-value=18 Score=27.47 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=48.7
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc----------cccHHHH
Q 044047 40 RELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE----------IHQVEHA 109 (260)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 109 (260)
.++|+.+...++.|.-.++.-+.-.+.+.=.+.+.+.+++.+... ..-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 457777777777888777777777777777778888888887753 3335555555542 5777777
Q ss_pred HHHHHH
Q 044047 110 LKLFDE 115 (260)
Q Consensus 110 ~~~~~~ 115 (260)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 777665
No 374
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=81.63 E-value=12 Score=24.22 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=41.5
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-ccchHHHHHHHhccccHHHHHHHHHH
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT-VVTYNTLFHGLFEIHQVEHALKLFDE 115 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 115 (260)
..|..-....+.. ++. .+.+..+|..|...|+-.. ...|......+...|++++|..+|+.
T Consensus 63 ~nD~RylkiWi~y-a~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 63 KNDERYLKIWIKY-ADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TT-HHHHHHHHHH-HTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3344444444432 322 2389999999998876543 55677888889999999999999975
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.59 E-value=15 Score=25.66 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=25.6
Q ss_pred CCCccchHHHHHHHhccccHHHHHHHHHHHhhc
Q 044047 87 RPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS 119 (260)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (260)
.|++.+|..++.++...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577777888888888888888888887777664
No 376
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=81.50 E-value=5.6 Score=20.51 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=21.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 044047 206 CNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLML 238 (260)
Q Consensus 206 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 238 (260)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666667777777776676666666665553
No 377
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.50 E-value=22 Score=27.37 Aligned_cols=96 Identities=9% Similarity=0.043 Sum_probs=53.7
Q ss_pred CccchHHHHHHHhcccc------------HHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 044047 89 TVVTYNTLFHGLFEIHQ------------VEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC 156 (260)
Q Consensus 89 ~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (260)
|..+|..++..--..-. .+.-+.++++..+.+ +.+......++..+.+..+.+...+.++++....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Confidence 66777766654332211 234455666666554 4556666666666666666666666677666553
Q ss_pred CcCHHHHHHHHHHHHh---cCCHHHHHHHHHhh
Q 044047 157 ELGIEAYSCLIDGLCK---IGKLETAWELFQSL 186 (260)
Q Consensus 157 ~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 186 (260)
+-+...|...+..... .-.++....+|.+.
T Consensus 96 ~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 96 PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 3355556555554433 22455555555543
No 378
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.37 E-value=28 Score=28.50 Aligned_cols=109 Identities=18% Similarity=0.085 Sum_probs=72.7
Q ss_pred HHHHhcCcHHHHHHHHHHhhhc---CCCcCH-----HHHHHHHHHHHhcCCHHHHHHHHHhhhh-------CCCCCch--
Q 044047 133 DGLCKNGYIVEAAELFRTLRVL---KCELGI-----EAYSCLIDGLCKIGKLETAWELFQSLPR-------VGLMPNV-- 195 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 195 (260)
..+...|++.+|.+++...-.. |...++ ..||.+.....+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 4456789999999888654221 212222 2346666666677777777777766553 3444321
Q ss_pred ---------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 044047 196 ---------VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRN 243 (260)
Q Consensus 196 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 243 (260)
.+||. .-.|...|++-.|.+.|.+.... +..++..|-.|..+|...
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 23332 33567799999999999998875 677899999999999754
No 379
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.21 E-value=34 Score=29.25 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=24.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcc
Q 044047 60 TLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEI 103 (260)
Q Consensus 60 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (260)
.++-.|.++|++++|.++..+.... .......|...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4556677788888888877444332 333445566666666543
No 380
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=80.90 E-value=14 Score=24.60 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=30.0
Q ss_pred HhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCc
Q 044047 184 QSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNE 245 (260)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 245 (260)
..+.+.|++++. --..++..+...++.-.|.++++++.+.+...+..|...-+..+...|-
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334444544332 1233445555555556666666666665544444444444455554443
No 381
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.87 E-value=21 Score=26.65 Aligned_cols=173 Identities=9% Similarity=0.064 Sum_probs=92.1
Q ss_pred CCCccHHHHHHHHHHH-hccCCHHHHHHHHHHHhhcCCCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHhc---CC-
Q 044047 15 GVRPNAFVYSTLIDGF-CLTGEIDRARELFVSMDINGCMHN---VVTYNTLINGYCKTKDVEESLNLYSEMLSK---GI- 86 (260)
Q Consensus 15 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 86 (260)
+..||+..=|..-.+- .+...+++|+.-|++..+...... ..+...++..+.+.+++++....+.++..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4455655444332221 234567788888877765432222 334456677788888888887777776431 11
Q ss_pred -CCCccchHHHHHHHhccccHHHHHHHHHHHhh----c-CCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC----
Q 044047 87 -RPTVVTYNTLFHGLFEIHQVEHALKLFDEMQH----S-DVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC---- 156 (260)
Q Consensus 87 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 156 (260)
.-+....|+++...+...+.+....+|+.-.+ . +-..--.|-..+...|...+++....++++++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 12344556666655555555444444433211 1 0011112334566667777777777777776653210
Q ss_pred -------CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 044047 157 -------ELGIEAYSCLIDGLCKIGKLETAWELFQSLP 187 (260)
Q Consensus 157 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (260)
.--...|..=+..|....+-.+...++++..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 1112345555667766666666666666554
No 382
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=80.57 E-value=4.7 Score=30.25 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=28.3
Q ss_pred Cchh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH
Q 044047 193 PNVV-TYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFN 234 (260)
Q Consensus 193 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 234 (260)
|+.. -|+..|+...+.||+++|+.++++.++.|..--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4433 35577777778888888888888887777664444443
No 383
>PRK09687 putative lyase; Provisional
Probab=80.54 E-value=22 Score=26.75 Aligned_cols=218 Identities=10% Similarity=0.008 Sum_probs=114.5
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCCh----HHHHHHHHHHHhcCCCCCccch
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDV----EESLNLYSEMLSKGIRPTVVTY 93 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 93 (260)
+|.......+..+...|..+.. ..+..+... ++...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~-~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVF-RLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHH-HHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 4566666667777766654333 333334332 3455555556666666653 4567777666333 2454555
Q ss_pred HHHHHHHhccccH-----HHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHH
Q 044047 94 NTLFHGLFEIHQV-----EHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLID 168 (260)
Q Consensus 94 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (260)
...+.++...+.. ..+...+..... .++..+-...+.++...++. .+...+-.+.. .++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHH
Confidence 5555555544321 223333333222 23445555666777776653 45555555544 334444455555
Q ss_pred HHHhcC-CHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchh
Q 044047 169 GLCKIG-KLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETS 247 (260)
Q Consensus 169 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 247 (260)
++.+.+ +...+...+..+... ++..+-...+.++.+.|+. .+...+-+..+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555543 233455555555532 4566666677777777763 4555555555432 2 233566667777765
Q ss_pred HHHHHHHHHhh
Q 044047 248 KVVELLHRMDE 258 (260)
Q Consensus 248 ~a~~~~~~m~~ 258 (260)
+|...+..+.+
T Consensus 252 ~a~p~L~~l~~ 262 (280)
T PRK09687 252 TLLPVLDTLLY 262 (280)
T ss_pred hHHHHHHHHHh
Confidence 56666665543
No 384
>PRK09687 putative lyase; Provisional
Probab=80.47 E-value=22 Score=26.74 Aligned_cols=202 Identities=12% Similarity=0.012 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHHhccCCH----HHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCCh-----HHHHHHHHHHHhcCCCCC
Q 044047 19 NAFVYSTLIDGFCLTGEI----DRARELFVSMDINGCMHNVVTYNTLINGYCKTKDV-----EESLNLYSEMLSKGIRPT 89 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 89 (260)
|+..=...+.++.+.|+. +++...+..+... .++..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 333334445555555542 3455555555333 34555554555555444321 223333333332 235
Q ss_pred ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcC-cHHHHHHHHHHhhhcCCCcCHHHHHHHHH
Q 044047 90 VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNG-YIVEAAELFRTLRVLKCELGIEAYSCLID 168 (260)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (260)
..+-...+.++.+.++ +.++..+-.+.+. ++..+-...+.++...+ +...+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5555566777777776 4566666665543 34445555666666543 23456666665553 557777777888
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 044047 169 GLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCI 241 (260)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 241 (260)
++.+.|+. .+...+-...+.+ + .....+.++...|.. +|...+..+.+. .||..+-...+.++.
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888885 4555555555432 2 234677888888885 688888888864 457777777766664
No 385
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=80.07 E-value=6 Score=29.74 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCC
Q 044047 24 STLIDGFCLTGEIDRARELFVSMDINGC 51 (260)
Q Consensus 24 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 51 (260)
+.-|....+.||+++|+.++++..+.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445555555555555555555555443
No 386
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=79.94 E-value=18 Score=25.21 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhcCCCcC--HHHH-----HHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 141 IVEAAELFRTLRVLKCELG--IEAY-----SCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
.+.|+.+|+.+.+....|. .... -..+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5667777776665432221 1111 2234456677777777777777665
No 387
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=79.76 E-value=29 Score=29.64 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=54.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhc--CCCCchhhHHHHHHHHHhcCChH------HHHHHHHHHHhcCCCCCccchHHH
Q 044047 25 TLIDGFCLTGEIDRARELFVSMDIN--GCMHNVVTYNTLINGYCKTKDVE------ESLNLYSEMLSKGIRPTVVTYNTL 96 (260)
Q Consensus 25 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 96 (260)
+|+.+|...|++-.+..+++..... |-+.-...+|..++..++.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998754 33344567888899999999764 3444444433 44467777777
Q ss_pred HHHHhc
Q 044047 97 FHGLFE 102 (260)
Q Consensus 97 ~~~~~~ 102 (260)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 765443
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.36 E-value=20 Score=26.33 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh----CCC-CCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFLDMEA----KGV-APNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
....+..-|...|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+..+.+-=++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 344667788899999999999998852 232 3456667778888889999998888766654
No 389
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=78.04 E-value=32 Score=27.09 Aligned_cols=123 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHhccccHH---HHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHH
Q 044047 94 NTLFHGLFEIHQVE---HALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGL 170 (260)
Q Consensus 94 ~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (260)
..++..+...++.. +|.-+++...... +.+...--.++..|...|-.+.|...|..+.-+.+..|.-.|. +..-+
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~-~~~r~ 261 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL-ILDRL 261 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH-HHHHH
Q ss_pred HhcCCHHHHH-HHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 171 CKIGKLETAW-ELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFL 219 (260)
Q Consensus 171 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 219 (260)
...|....+. ..+...... ..-+.......+....+.|.+.+..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~f-y~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 262 STLGPFKSAPENLLENALKF-YDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred hccCcccccchHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 390
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.83 E-value=18 Score=24.08 Aligned_cols=85 Identities=11% Similarity=0.228 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCC-----CCchhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCChhhHHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGL-----MPNVVTYNIMIHGFCNDGQ-MDKAHDLFLDMEAKGVAPNCVTFNTL 236 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l 236 (260)
.+.++......+++.....+++.+..... ..+...|+.++.+..+..- ---+..+|.-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444555555555555554422110 1244567777777755554 33466677777766677778888888
Q ss_pred HHHHHhcCchh
Q 044047 237 MLGCIRNNETS 247 (260)
Q Consensus 237 ~~~~~~~~~~~ 247 (260)
+.++.+....+
T Consensus 122 i~~~l~g~~~~ 132 (145)
T PF13762_consen 122 IKAALRGYFHD 132 (145)
T ss_pred HHHHHcCCCCc
Confidence 87776654433
No 391
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=77.50 E-value=8 Score=19.94 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=16.8
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCchhhHHHHH
Q 044047 31 CLTGEIDRARELFVSMDINGCMHNVVTYNTLI 62 (260)
Q Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 62 (260)
.+.|-.+++..+++.|.+.|+--+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554444
No 392
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.36 E-value=24 Score=25.34 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=43.7
Q ss_pred HHHhcCcHHHHHHHHHHhhh----cCCCcCHH--HHHHHHHHHHhcCCHH-------HHHHHHHhhhhCCCCC----c-h
Q 044047 134 GLCKNGYIVEAAELFRTLRV----LKCELGIE--AYSCLIDGLCKIGKLE-------TAWELFQSLPRVGLMP----N-V 195 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~~--~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~~~~----~-~ 195 (260)
-+.....+++|++.+....- .+.++... .+--+.-.|...|+.+ .|.+.|.+.....-.| + .
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 45555667777776655431 12233322 2333344444555533 3444444443332111 1 1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044047 196 VTYNIMIHGFCNDGQMDKAHDLFLDMEAKG 225 (260)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 225 (260)
...-.+.....+.|+.++|.+.|.++...+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 222234445556777777777777777654
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.17 E-value=13 Score=22.35 Aligned_cols=55 Identities=7% Similarity=-0.007 Sum_probs=31.0
Q ss_pred HHhcCCHHHHHHHHHhhh----hCCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 170 LCKIGKLETAWELFQSLP----RVGLMPN----VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~----~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
..+.|++..|.+.+.+.- ..+.... ....-.+.......|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 356777777755554443 3222210 122233445556678888888888877764
No 394
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=76.37 E-value=30 Score=26.36 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=49.3
Q ss_pred HHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----------hcCchhHH
Q 044047 180 WELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCI----------RNNETSKV 249 (260)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----------~~~~~~~a 249 (260)
.++++.+...++.|.-.++..+.-.+.+.=.+..++.+|+.+.... .-|..|+..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4577777788888888888888888888888888999998887642 22445554443 24677666
Q ss_pred HHHHH
Q 044047 250 VELLH 254 (260)
Q Consensus 250 ~~~~~ 254 (260)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66654
No 395
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=76.22 E-value=16 Score=22.82 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 196 VTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
.-|..|+..|...|..++|++++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578888888899999999999988877
No 396
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.69 E-value=32 Score=25.89 Aligned_cols=190 Identities=13% Similarity=0.073 Sum_probs=111.6
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc----c
Q 044047 32 LTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK----TKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE----I 103 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 103 (260)
..+++..+...+......+ +......+...|.. ..+...|..++....+.|.. .....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 4566777777777776644 22333344444433 34578888888877766543 233335555544 3
Q ss_pred ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcC-------cHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHh----
Q 044047 104 HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNG-------YIVEAAELFRTLRVLKCELGIEAYSCLIDGLCK---- 172 (260)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 172 (260)
.+..+|..+|+...+.|.++.......+...|..-. +...|...+...-..+ ++.....+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 478889999999888875442233444444444321 2336777777776655 44444555544432
Q ss_pred cCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcC---------------ChHHHHHHHHHHHhCCCCCChhhHH
Q 044047 173 IGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDG---------------QMDKAHDLFLDMEAKGVAPNCVTFN 234 (260)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~~p~~~~~~ 234 (260)
..+..+|...|....+.|. ......+. .+...| +...|...+......+.........
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3478888889988888764 22333333 444444 6667777777777766555544444
No 397
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.61 E-value=29 Score=25.43 Aligned_cols=119 Identities=15% Similarity=0.059 Sum_probs=68.1
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCch-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc-chHHHHHHHhccccH
Q 044047 29 GFCLTGEIDRARELFVSMDINGCMHNV-VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVV-TYNTLFHGLFEIHQV 106 (260)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 106 (260)
.|.....++.|...|.+.... .|+. .-|..-+.++.+..+++.+..=-.+..+. .|+.. ....+.........+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 345556777888877666655 3555 44566777777888887776655555543 44433 333344555566777
Q ss_pred HHHHHHHHHHh----hcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHh
Q 044047 107 EHALKLFDEMQ----HSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTL 151 (260)
Q Consensus 107 ~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (260)
+.|+..+.+.. ...+++.......|..+--..-...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88888777763 2333344444555555433333444455444443
No 398
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.60 E-value=32 Score=25.88 Aligned_cols=145 Identities=12% Similarity=0.070 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh----cCChHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCL----TGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK----TKDVEES 74 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 74 (260)
.+.+.+......+ +......+...+.. ..+..+|.++|......| .......+...|.. ..|..+|
T Consensus 59 ~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A 132 (292)
T COG0790 59 KALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKA 132 (292)
T ss_pred HHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHH
Confidence 3445555555433 22333334444433 456888999999777766 33333345555544 4488999
Q ss_pred HHHHHHHHhcCCCCCccchHHHHHHHhccc-------cHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh----cCcHHH
Q 044047 75 LNLYSEMLSKGIRPTVVTYNTLFHGLFEIH-------QVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK----NGYIVE 143 (260)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 143 (260)
..++++..+.|..+...+...+...|.... +...|...|.+....+ +......+...|.. ..++.+
T Consensus 133 ~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 133 LKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHH
Confidence 999999999886643223444444444431 2347888888888776 33444555555533 457899
Q ss_pred HHHHHHHhhhcCC
Q 044047 144 AAELFRTLRVLKC 156 (260)
Q Consensus 144 a~~~~~~~~~~~~ 156 (260)
|..+|...-+.+.
T Consensus 210 A~~wy~~Aa~~g~ 222 (292)
T COG0790 210 AFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHCCC
Confidence 9999999888774
No 399
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.21 E-value=30 Score=25.33 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=34.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc-cccHHHHHHHHHHHh
Q 044047 60 TLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE-IHQVEHALKLFDEMQ 117 (260)
Q Consensus 60 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 117 (260)
.++...-..|+++++...++++...+...+..--+.+..+|-. .|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 4556666777777777777777777666666666666666532 344445555555543
No 400
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=74.89 E-value=14 Score=23.86 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=42.2
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCc-hhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 16 VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHN-VVTYNTLINGYCKTKDVEESLNLYS 79 (260)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 79 (260)
.+.|+.-....+.---.. ++..++|..|..+++-.. +..|......+-..|++.+|.++|+
T Consensus 62 YknD~RyLkiWi~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 62 YKNDPRYLKIWLKYADNC---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred hcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 355665444444332222 446778999988876544 4557788888889999999999986
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=74.69 E-value=4.2 Score=26.40 Aligned_cols=28 Identities=18% Similarity=0.513 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHhhhhCCCCCchhhHHHHHH
Q 044047 174 GKLETAWELFQSLPRVGLMPNVVTYNIMIH 203 (260)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (260)
|.-..|..+|+.|.+.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 333444555555555554443 3444443
No 402
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=74.59 E-value=18 Score=29.16 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=59.1
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccH
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQV 106 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (260)
+..+...+.++.|..++.++.+.. +..+..|..-..++.+.+++..|+.=+.++.+..+. -...|..-..++...+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHH
Confidence 444556677788888887777664 224444444457777777777777766666665311 223333333444455556
Q ss_pred HHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 107 EHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
.+|+..|+..... .|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 6666666655443 34444444444433
No 403
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.38 E-value=3.4 Score=31.58 Aligned_cols=95 Identities=17% Similarity=0.029 Sum_probs=65.9
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHH
Q 044047 31 CLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHAL 110 (260)
Q Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 110 (260)
...|.++.|++.|...+..+ ++....|..-.+.+.+.+.+..|++=+....+.+.. +..-|-.--.+-...|.|+++-
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 35677888888888887776 667777777778888888888888877777665322 2333433344455678888888
Q ss_pred HHHHHHhhcCCCcchhh
Q 044047 111 KLFDEMQHSDVAAETST 127 (260)
Q Consensus 111 ~~~~~~~~~~~~~~~~~ 127 (260)
..+....+.+..+....
T Consensus 203 ~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHHhccccHHHHH
Confidence 88888877776554433
No 404
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.09 E-value=48 Score=27.25 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHH--hcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFC--NDGQMDKAHDLFLDMEAK-GVAPNCVTFNTLMLG 239 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 239 (260)
-+.++..+-+.|-..+|..++..+.... +|+...|..++..=. ..-+...+..+++.|... | .|+..|...+.-
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKE 539 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHh
Confidence 3567777788888999999998888763 456677776665322 123377788888888754 6 577777776666
Q ss_pred HHhcCchhHHHHHHHHHh
Q 044047 240 CIRNNETSKVVELLHRMD 257 (260)
Q Consensus 240 ~~~~~~~~~a~~~~~~m~ 257 (260)
=...|..+.+-.++.+..
T Consensus 540 e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAM 557 (568)
T ss_pred hccCCCcccccHHHHHHH
Confidence 667888887777766543
No 405
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=73.88 E-value=4 Score=26.51 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 74 SLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 74 a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
|-.+|.+|++.|-+||. |+.|+..
T Consensus 114 aY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 114 AYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred HHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 56677777777666543 4555543
No 406
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=73.78 E-value=13 Score=20.77 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=12.9
Q ss_pred cchHHHHHHHhccccHHHHHHHHHHHhhcC
Q 044047 91 VTYNTLFHGLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 91 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
..++-++..++...-.+.++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444443
No 407
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.23 E-value=36 Score=25.35 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=14.3
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhC
Q 044047 167 IDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
+-.|...++...|...+....+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 44456667777777776655443
No 408
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.20 E-value=2.7 Score=32.08 Aligned_cols=86 Identities=12% Similarity=-0.013 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044047 104 HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELF 183 (260)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 183 (260)
|.++.|+..|...+..+ ++....|..-.+++.+.+.+..|++=+......+ +.+..-|-.--.+....|+|++|...+
T Consensus 128 G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHHHH
Confidence 44555555555544443 3344444444444555555555555444444332 111122222223333445555555555
Q ss_pred HhhhhCCC
Q 044047 184 QSLPRVGL 191 (260)
Q Consensus 184 ~~~~~~~~ 191 (260)
....+.++
T Consensus 206 ~~a~kld~ 213 (377)
T KOG1308|consen 206 ALACKLDY 213 (377)
T ss_pred HHHHhccc
Confidence 55555443
No 409
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.62 E-value=37 Score=24.91 Aligned_cols=120 Identities=15% Similarity=0.074 Sum_probs=72.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCc-cchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHH
Q 044047 64 GYCKTKDVEESLNLYSEMLSKGIRPTV-VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIV 142 (260)
Q Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 142 (260)
.|.....+..|+..|.+.+.. .|+. .-|..-+.++.+..+++.+..=-....+.. +........+.........++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhcccc
Confidence 355556778888877666554 5555 445566667777888887776666655542 223334445566677777888
Q ss_pred HHHHHHHHhh----hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 044047 143 EAAELFRTLR----VLKCELGIEAYSCLIDGLCKIGKLETAWELFQSL 186 (260)
Q Consensus 143 ~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (260)
.|+..+.+.. ...+++.......|..+--..-...+..++.+..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888877663 3334444555566655544444555555555443
No 410
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.36 E-value=19 Score=30.25 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 044047 207 NDGQMDKAHDLFLDMEAKGVAPNCVTFNTLML 238 (260)
Q Consensus 207 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 238 (260)
+.|++.+|.+.+-.+.+.+..|...-...|.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 35777888887777777666666544443333
No 411
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=71.16 E-value=19 Score=21.38 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=23.5
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 41 ELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
++|+-....|+..|...|..++....-.--++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4555555555555666665555555444455555555555543
No 412
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=70.81 E-value=68 Score=27.63 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=44.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhcC--CCcchhhHHHHHHHHHhcCcHHH------HHHHHHHhhhcCCCcCHHHHHHH
Q 044047 95 TLFHGLFEIHQVEHALKLFDEMQHSD--VAAETSTYNTFIDGLCKNGYIVE------AAELFRTLRVLKCELGIEAYSCL 166 (260)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 166 (260)
+|+.+|...|++..+.++++.+...+ -+.-...+|..++.+.+.|.++- +.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67778888888888888887775432 12234467777777777776542 223333322 33455666666
Q ss_pred HHHHHh
Q 044047 167 IDGLCK 172 (260)
Q Consensus 167 ~~~~~~ 172 (260)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 555443
No 413
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.54 E-value=70 Score=27.62 Aligned_cols=116 Identities=6% Similarity=-0.096 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHhhhcC-CCcC--HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHH
Q 044047 139 GYIVEAAELFRTLRVLK-CELG--IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAH 215 (260)
Q Consensus 139 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 215 (260)
.+.+.|...+....... ..+. ..+...+.......+...++...++...... .+......-++.....++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34466666666543222 1111 1122333332333322444555554433221 23344455555556777888777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 216 DLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 216 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
..+..|.... .-...-.--+..++...|+.++|..+|+++.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777765432 2233444456677667788888888887763
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.12 E-value=21 Score=21.47 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=28.0
Q ss_pred hccCCHHHHHHHHHHHh----hcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 31 CLTGEIDRARELFVSMD----INGCMHN----VVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 31 ~~~~~~~~a~~~~~~~~----~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
.+.|++..|.+.+.... ..+.... ....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677777755554442 2221111 12222344555666777777777776654
No 415
>PRK10941 hypothetical protein; Provisional
Probab=70.03 E-value=44 Score=25.06 Aligned_cols=77 Identities=9% Similarity=-0.067 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK-GVAPNCVTFNTLMLGC 240 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~ 240 (260)
.+.+-.+|.+.++++.|.++.+.+..... .++.-+.--.-.|.+.|.+..|..=++...+. .-.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 35555667777777777777777776531 13444455555667777777777777666654 1234444444444443
No 416
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.41 E-value=1.3e+02 Score=30.30 Aligned_cols=62 Identities=6% Similarity=-0.016 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 195 VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
..+|-...+.....|+++.|...+-...+.+ -+..+.-........|+...|+.++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4678888888888999999998888777764 2345556778889999999999999987754
No 417
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=68.74 E-value=52 Score=25.41 Aligned_cols=65 Identities=18% Similarity=0.076 Sum_probs=39.5
Q ss_pred chhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 124 ETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL---GIEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
...++..++..+.+.|.++.|...+..+...+... .+.....-++..-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666677777777777777776666533111 334444455666666777777777766665
No 418
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.62 E-value=59 Score=25.99 Aligned_cols=64 Identities=17% Similarity=0.065 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhc--CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDIN--GCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
..+.-+.+-|...|+++.|++.|...... ..+.....|-.+|..-+-.|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 45677778888889999998888875443 11233455666777777778887777776666543
No 419
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.60 E-value=23 Score=28.65 Aligned_cols=104 Identities=15% Similarity=0.089 Sum_probs=66.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCcc-chHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCc
Q 044047 62 INGYCKTKDVEESLNLYSEMLSKGIRPTVV-TYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGY 140 (260)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 140 (260)
+....+.++++.|..++.+..+. .||.. .|..-..++.+.+++..|+.=....++.. +-....|..=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 45556678899999999998885 45444 44444477888888888887777776655 3233334444455566667
Q ss_pred HHHHHHHHHHhhhcCCCcCHHHHHHHHHHH
Q 044047 141 IVEAAELFRTLRVLKCELGIEAYSCLIDGL 170 (260)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (260)
+.+|...|+..... .|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 77777777766543 55555455444444
No 420
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=68.50 E-value=22 Score=21.11 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=26.5
Q ss_pred HHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 181 ELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
++|+-....|+..|+..|..++..+.-.--++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5566666666666666666666666555556666666666554
No 421
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=68.22 E-value=22 Score=22.31 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChH
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (260)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555566677777766655555555555556666665544
No 422
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.03 E-value=23 Score=21.13 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=16.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchh
Q 044047 207 NDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETS 247 (260)
Q Consensus 207 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 247 (260)
..|+.+.|.+++..+. .| +..|..++.++...|..+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555544 31 123444445554444433
No 423
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=67.93 E-value=75 Score=26.92 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 159 GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
+......++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.+.|+...+..+...+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455566666666666666666665543321 22344555555566666665555555444
No 424
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=67.65 E-value=37 Score=23.29 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=17.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccc
Q 044047 68 TKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIH 104 (260)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (260)
.++.-.|.++++.+.+.+...+..|...-|..+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3344445555555555544444444444444444444
No 425
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.76 E-value=59 Score=25.27 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=32.0
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhc---CCCcchhhH--HHHHHHHHhcCcHHHHHHHHHHhhh
Q 044047 95 TLFHGLFEIHQVEHALKLFDEMQHS---DVAAETSTY--NTFIDGLCKNGYIVEAAELFRTLRV 153 (260)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (260)
.++...-+.++.++|+++++++.+. .-.|+...| ..+.+++...|+..++.+.+.+...
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444445555677777777666432 112333333 2344555566777777776666554
No 426
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.72 E-value=64 Score=25.67 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCcc--chHHHHHHHh--ccccHHHHHHHHHHHhhc
Q 044047 64 GYCKTKDVEESLNLYSEMLSKGIRPTVV--TYNTLFHGLF--EIHQVEHALKLFDEMQHS 119 (260)
Q Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 119 (260)
.+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345678888888888888776 444443 2333333332 455677777777776544
No 427
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=66.64 E-value=33 Score=22.41 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLSKGIR 87 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 87 (260)
.++..++--+...|+++.|+.+.+-..+.|..
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 45556666778888888888888888887754
No 428
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.15 E-value=60 Score=25.18 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=30.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCC-ccchHHHHHHHhccccHHHHHHHHHHHhhc
Q 044047 60 TLINGYCKTKDVEESLNLYSEMLSKGIRPT-VVTYNTLFHGLFEIHQVEHALKLFDEMQHS 119 (260)
Q Consensus 60 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (260)
.+..+..+.|+..+|.+.++++.+.-.-.+ ......++.++....-+.++..++-+..+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444455556777777777776655411101 112234555555555555554444444333
No 429
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=66.13 E-value=19 Score=22.81 Aligned_cols=46 Identities=9% Similarity=0.007 Sum_probs=24.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCc
Q 044047 200 IMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNE 245 (260)
Q Consensus 200 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 245 (260)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3444445555556666666666666555555555555555555553
No 430
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.12 E-value=11 Score=16.64 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHhhc
Q 044047 35 EIDRARELFVSMDIN 49 (260)
Q Consensus 35 ~~~~a~~~~~~~~~~ 49 (260)
+.+.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344455555555433
No 431
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.03 E-value=1e+02 Score=27.72 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=104.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcC---CCCchhhHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCCCCccchHH-
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDING---CMHNVVTYNTLINGYCKTKDV--EESLNLYSEMLSKGIRPTVVTYNT- 95 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 95 (260)
-|..|+..|...|..++|+++|.+..... -..-...+...+..+.+.+.. +-+++.-....+.........+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47889999999999999999999887632 111122344455555555544 444444444443322211222222
Q ss_pred -----------HHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCc--------HHHHHHH-----HHHh
Q 044047 96 -----------LFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGY--------IVEAAEL-----FRTL 151 (260)
Q Consensus 96 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~ 151 (260)
.+-.|......+.+..+++.+....-.++....+.++..|+..=+ -+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 122345566777888899988776655677777777777764222 1122222 1111
Q ss_pred hhc--CCCc--------CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC-------------CCCCchhhHHHHHHHHHhc
Q 044047 152 RVL--KCEL--------GIEAYSCLIDGLCKIGKLETAWELFQSLPRV-------------GLMPNVVTYNIMIHGFCND 208 (260)
Q Consensus 152 ~~~--~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~ 208 (260)
... .+.| ....|....-.+.+.|+.++|+.++-..... ...++...|..+++.|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 110 1111 2233433444455788888888877654431 1234667788888877765
No 432
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.77 E-value=62 Score=25.94 Aligned_cols=100 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchh---------------hHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 88 PTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETS---------------TYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
|+......++..+-..-+-....+.++.......+.+.. +...+++..+-.|++..|+++++.+.
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred hcC-------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 044047 153 VLK-------CELGIEAYSCLIDGLCKIGKLETAWELFQSLP 187 (260)
Q Consensus 153 ~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (260)
-.. ..-...++.-+.-+|...+++.+|.+.|....
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 433
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=65.04 E-value=71 Score=25.65 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCccchHHHHHHHhccccHHHHHHHHHHHh
Q 044047 58 YNTLINGYCKTKDVEESLNLYSEMLSK--GIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQ 117 (260)
Q Consensus 58 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 117 (260)
...|++...-.||.+...+.++.+.+. |..|...+---+.-+|.-.+++.+|.+.|-...
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 456777888889988878888777653 333332222345667778889999988887654
No 434
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.02 E-value=27 Score=20.84 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHH
Q 044047 40 RELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHA 109 (260)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 109 (260)
.++++.+.+.|+ .+..-...+-.+--..|+.+.|.+++..+. + .+..|..+++++...|...-|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhhh
Confidence 345555555542 222222222222223456666666666665 4 234556666666665554443
No 435
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=64.71 E-value=62 Score=24.82 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=7.0
Q ss_pred ccHHHHHHHHHHH
Q 044047 18 PNAFVYSTLIDGF 30 (260)
Q Consensus 18 ~~~~~~~~l~~~~ 30 (260)
|.+..++.+|+-|
T Consensus 109 ~~~qvf~KliRRy 121 (412)
T KOG2297|consen 109 NSVQVFQKLIRRY 121 (412)
T ss_pred HHHHHHHHHHHHH
Confidence 4455556666544
No 436
>PRK09462 fur ferric uptake regulator; Provisional
Probab=64.57 E-value=39 Score=22.48 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=33.6
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhcc-CCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCC
Q 044047 9 DLMIQRGVRPNAFVYSTLIDGFCLT-GEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKD 70 (260)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (260)
+.+.+.|++++..= ..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34555666655542 2344444443 3466777777777766644555555555555555543
No 437
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=63.87 E-value=75 Score=25.48 Aligned_cols=122 Identities=11% Similarity=0.047 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV-VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
+......++. ...|+...|+..++.+.... +++. .+ .+...+++.+-... ...+...+..++
T Consensus 191 ~~~a~~~l~~--~s~GD~R~aLN~LE~~~~~~-~~~~~~~-------------~~~l~~~l~~~~~~-~Dk~gD~hYdli 253 (436)
T COG2256 191 DEEALDYLVR--LSNGDARRALNLLELAALSA-EPDEVLI-------------LELLEEILQRRSAR-FDKDGDAHYDLI 253 (436)
T ss_pred CHHHHHHHHH--hcCchHHHHHHHHHHHHHhc-CCCcccC-------------HHHHHHHHhhhhhc-cCCCcchHHHHH
Confidence 3444444443 24688888888887765543 2222 11 22233333332222 222444555555
Q ss_pred HHHh---ccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCc-----HHHHHHHHHHhhhcCCC
Q 044047 98 HGLF---EIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGY-----IVEAAELFRTLRVLKCE 157 (260)
Q Consensus 98 ~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 157 (260)
+++. +..+++.|+.++-+|.+.|-.|....-..++-++-.-|. ..-+...++.....|.+
T Consensus 254 SA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~P 321 (436)
T COG2256 254 SALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSP 321 (436)
T ss_pred HHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCc
Confidence 5554 345677777777777777754544443444444433332 12233444444555533
No 438
>PRK14700 recombination factor protein RarA; Provisional
Probab=63.47 E-value=65 Score=24.59 Aligned_cols=145 Identities=10% Similarity=0.005 Sum_probs=76.9
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHH
Q 044047 16 VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNT 95 (260)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (260)
+..+......++.. ..||...|+..++.+.......+. . .+ ..+...+++.+-.- ...-+...+..
T Consensus 63 ~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~-~---~i-------t~~~~~~~~~~~~~-~yDk~gd~HYd 128 (300)
T PRK14700 63 FKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDE-I---YL-------NKELFDQAVGETSR-DFHREGKEFYE 128 (300)
T ss_pred CCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCC-C---cc-------CHHHHHHHHhHHHh-cccCCcchhHH
Confidence 44566666666554 578999999999885531100010 0 00 11222222222111 11223334444
Q ss_pred HHHHHh---ccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCc-----HHHHHHHHHHhhhcCCCcCHHHHHHHH
Q 044047 96 LFHGLF---EIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGY-----IVEAAELFRTLRVLKCELGIEAYSCLI 167 (260)
Q Consensus 96 l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 167 (260)
+++++. +..+++.|+-++.+|.+.|..|....-..++.++-.-|. ...|...++.....|.|-........+
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~av 208 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAA 208 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 555554 456788888888889888866666665666666655552 334555666666667444333333333
Q ss_pred HHHHhcC
Q 044047 168 DGLCKIG 174 (260)
Q Consensus 168 ~~~~~~~ 174 (260)
-.++..-
T Consensus 209 iyLA~aP 215 (300)
T PRK14700 209 IYLAVAP 215 (300)
T ss_pred HHHHcCC
Confidence 3333333
No 439
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=62.90 E-value=33 Score=21.33 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=7.7
Q ss_pred HHHHhcCChHHHHHHHHH
Q 044047 63 NGYCKTKDVEESLNLYSE 80 (260)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~ 80 (260)
.-|...|+.++|...+.+
T Consensus 10 ~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 10 MEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHH
Confidence 334444444444444444
No 440
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=62.63 E-value=1.4e+02 Score=28.05 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=94.7
Q ss_pred hccccHHHHHH------HHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHh-------hhcCCCcCHHHHHHHH
Q 044047 101 FEIHQVEHALK------LFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTL-------RVLKCELGIEAYSCLI 167 (260)
Q Consensus 101 ~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~ 167 (260)
...|.+.++.+ ++...-..-.+.....|..+...+-+.++.++|...-... .....+-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 33455555555 5543222223556677888888899999999998875543 2222233455677777
Q ss_pred HHHHhcCCHHHHHHHHHhhhhC-----C-CCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC--CCChhhH
Q 044047 168 DGLCKIGKLETAWELFQSLPRV-----G-LMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK-----GV--APNCVTF 233 (260)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--~p~~~~~ 233 (260)
..+....+...|...+...... | ..|. ..+++.+-..+...++++.|.++++.+.+. |. -++..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 6677777877777777665432 2 1233 344455555555668889999998888653 11 2345667
Q ss_pred HHHHHHHHhcCchhHHHHHH
Q 044047 234 NTLMLGCIRNNETSKVVELL 253 (260)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~ 253 (260)
..+.+.+...+++..|....
T Consensus 1103 ~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 77777777777777765543
No 441
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.39 E-value=65 Score=24.23 Aligned_cols=181 Identities=12% Similarity=0.061 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHcCCCcc---HHHHHHHHHHHhccCCHHHHHHHHHHHhhc---CC--CCchhhHHHHHHHHHhcCChHH
Q 044047 2 DEASRLLDLMIQRGVRPN---AFVYSTLIDGFCLTGEIDRARELFVSMDIN---GC--MHNVVTYNTLINGYCKTKDVEE 73 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~~ 73 (260)
++|+.-|+...+...... -.....++....+.+++++..+.+.++... .+ .-+..+.|.++..-....+.+.
T Consensus 44 ~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~L 123 (440)
T KOG1464|consen 44 KEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDL 123 (440)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHH
Confidence 467788888777532323 334556788889999999999988887431 11 2345567777777666666555
Q ss_pred HHHHHHHHHhc--CCCCC---ccchHHHHHHHhccccHHHHHHHHHHHhhcCCC-----------cchhhHHHHHHHHHh
Q 044047 74 SLNLYSEMLSK--GIRPT---VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVA-----------AETSTYNTFIDGLCK 137 (260)
Q Consensus 74 a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~ 137 (260)
....++.-.+. ..+.+ -.|-..|...|...+.+....++++++..+-.. --...|..-|..|..
T Consensus 124 LQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~ 203 (440)
T KOG1464|consen 124 LQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTE 203 (440)
T ss_pred HHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhh
Confidence 54444432221 01111 123346788888999999999999888654211 113467777888888
Q ss_pred cCcHHHHHHHHHHhhhcC-CCcCHHHHHHHH----HHHHhcCCHHHHHHH
Q 044047 138 NGYIVEAAELFRTLRVLK-CELGIEAYSCLI----DGLCKIGKLETAWEL 182 (260)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~~~~~~a~~~ 182 (260)
..+-.....+++...... .-|.+.....+- .+..+.|++++|..=
T Consensus 204 qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 204 QKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 888888888887765332 234544443321 223466778777543
No 442
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.44 E-value=38 Score=21.22 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhh
Q 044047 128 YNTFIDGLCKNGYIVEAAELFRTLRV 153 (260)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (260)
|..++..|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555555555555555555555443
No 443
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.74 E-value=1e+02 Score=26.02 Aligned_cols=143 Identities=17% Similarity=0.058 Sum_probs=82.2
Q ss_pred cccHHHHHHHHHHHhhcC-----------CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh-------hcC---------
Q 044047 103 IHQVEHALKLFDEMQHSD-----------VAAETSTYNTFIDGLCKNGYIVEAAELFRTLR-------VLK--------- 155 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~--------- 155 (260)
.+.++++...|.-....- .|-...+...+..++...|+.+.+..++++.. ...
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 345566666665544321 12233445555667778888777766665532 111
Q ss_pred ----CCcCHHHHHHH---HHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHH-hcCChHHHHHHHHHHHhC---
Q 044047 156 ----CELGIEAYSCL---IDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFC-NDGQMDKAHDLFLDMEAK--- 224 (260)
Q Consensus 156 ----~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~--- 224 (260)
.+.+...|-++ +..+.+.|.+..|+++-+.+.+....-|+.....+|..|+ +..+++-.+++++.....
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 11233333333 4556778888899888888887764446666667777765 567777777777776433
Q ss_pred CCCCChhhHHHHHHHHHhcCc
Q 044047 225 GVAPNCVTFNTLMLGCIRNNE 245 (260)
Q Consensus 225 ~~~p~~~~~~~l~~~~~~~~~ 245 (260)
..-||..-=.++...|.+...
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNE 431 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCC
Confidence 234554333344455544443
No 444
>PRK09857 putative transposase; Provisional
Probab=60.74 E-value=73 Score=24.28 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN 229 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 229 (260)
+..++......++.++..++++.+.+. .+........+..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 455665556677777777777766654 222334455666777777777788888888888887654
No 445
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=60.71 E-value=52 Score=22.59 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=35.8
Q ss_pred hhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChH
Q 044047 151 LRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (260)
+...|...+..-. .++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3444555554433 344444444556677777777777766566666555666666666554
No 446
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=60.21 E-value=35 Score=20.47 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=16.5
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
|.|...--.+...+...|++++|++.+-.+.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334445555555555555555555555555544
No 447
>PRK13342 recombination factor protein RarA; Reviewed
Probab=60.06 E-value=90 Score=25.15 Aligned_cols=32 Identities=13% Similarity=-0.030 Sum_probs=19.4
Q ss_pred cccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 103 IHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
.++.+.|+.++..|.+.|..|....-..++.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 36777777777777777755554333333333
No 448
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.91 E-value=1.3e+02 Score=26.91 Aligned_cols=194 Identities=11% Similarity=0.015 Sum_probs=101.6
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCcc-------chHHHH-HHHhccccHHHHHHHHHHHhhc----CCCcchhhHHHHH
Q 044047 65 YCKTKDVEESLNLYSEMLSKGIRPTVV-------TYNTLF-HGLFEIHQVEHALKLFDEMQHS----DVAAETSTYNTFI 132 (260)
Q Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 132 (260)
.....++.+|..++.++...-..|+.. .++.+- ......|+++.+..+-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 344678899999888876642232222 122221 1233567888888877766543 2223445566777
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCcCHHH---HHHH--HHHHHhcCCHHH--HHHHHHhhhhC-----CC-CCchhhHH
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLKCELGIEA---YSCL--IDGLCKIGKLET--AWELFQSLPRV-----GL-MPNVVTYN 199 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~~~--a~~~~~~~~~~-----~~-~~~~~~~~ 199 (260)
.+..-.|++++|..+.....+....-+... |..+ ...+...|+... ....+...... +. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 778888999999988877665432333332 2222 233455663322 22223222221 10 01223444
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 200 IMIHGFCND-GQMDKAHDLFLDMEAKGVAPNCVTF--NTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 200 ~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
.+..++.+. +...++..-+.--......|-...+ ..|+......|+.++|...++++..
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 555555542 1112222222222222122222222 2677888899999999999988754
No 449
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.36 E-value=92 Score=25.00 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCccchHHHHHHHhccccHHHHHHHHHHHhhc---------CCCc
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKG--IRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS---------DVAA 123 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 123 (260)
...+.-+...|...|+++.|++.|.+.++-- .+.....|..++..-.-.|+|..+..+..+.... .+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4567788889999999999999999865431 1123444555666666778888777777666543 1233
Q ss_pred chhhHHHHHHHHHhcCcHHHHHHHHHHh
Q 044047 124 ETSTYNTFIDGLCKNGYIVEAAELFRTL 151 (260)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (260)
....+..+...+ .++++.|.+.|-..
T Consensus 230 kl~C~agLa~L~--lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLL--LKKYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHH--HHHHHHHHHHHHhC
Confidence 333444444433 33677776666544
No 450
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.27 E-value=1.4e+02 Score=26.98 Aligned_cols=187 Identities=13% Similarity=0.037 Sum_probs=101.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---ccchHHHHHHHhccccH--HHHHHHHHHHhhcCCCcchhhHH--
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT---VVTYNTLFHGLFEIHQV--EHALKLFDEMQHSDVAAETSTYN-- 129 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 129 (260)
-|..|+..|...|+.++|++++.+..+..-.-+ ..-+...+..+...+.. +-++++-+-............+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 378999999999999999999999877321001 12223344444444443 33433333332221110011111
Q ss_pred ----------HHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC--------HHHHHHH-----HHhh
Q 044047 130 ----------TFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK--------LETAWEL-----FQSL 186 (260)
Q Consensus 130 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~ 186 (260)
.-+-.|......+-+...++.+....-..+....+.++..|+..=+ -+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 1233455666777788888888766656677777777777764321 2223222 1111
Q ss_pred hh--CCCCCc--------hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------------CCCCChhhHHHHHHHHHhc
Q 044047 187 PR--VGLMPN--------VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK-------------GVAPNCVTFNTLMLGCIRN 243 (260)
Q Consensus 187 ~~--~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------~~~p~~~~~~~l~~~~~~~ 243 (260)
.. ..+.|. ...|....-.+.+.|+.++|+.++-..+.. ...++...|..++..|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 11 112221 223333333445788888888887665441 1234667777887777665
No 451
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=59.26 E-value=66 Score=23.35 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=33.6
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCC---chhhH--HHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMH---NVVTY--NTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
.+...-+|.|+--|.-...+.+|-+.|.. ..|+++ +..++ ..-|...+..|+.+.|++...++-.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 34444555555555555555555555533 233333 22222 2345556677777777777666543
No 452
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.21 E-value=90 Score=24.87 Aligned_cols=53 Identities=21% Similarity=0.091 Sum_probs=27.2
Q ss_pred HHhcCcHHHHHHHHHHhhhcCCCcCHH--HHHHHHHHHH--hcCCHHHHHHHHHhhhh
Q 044047 135 LCKNGYIVEAAELFRTLRVLKCELGIE--AYSCLIDGLC--KIGKLETAWELFQSLPR 188 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 188 (260)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566666666666666654 333333 3333334333 23455566666665544
No 453
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.50 E-value=27 Score=18.54 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=11.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 044047 202 IHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 202 ~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
.-++.+.|++++|.+..+.+++
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344555555555555555554
No 454
>PRK09462 fur ferric uptake regulator; Provisional
Probab=58.46 E-value=52 Score=21.89 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=20.2
Q ss_pred CHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCCh
Q 044047 175 KLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQM 211 (260)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (260)
..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4556666666666655444555544445555555543
No 455
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=58.31 E-value=33 Score=19.63 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhc
Q 044047 35 EIDRARELFVSMDINGCMHNVVTYNTLINGYCKT 68 (260)
Q Consensus 35 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 68 (260)
+.+.|..++..+.... +.++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4566666666665443 55677777766665543
No 456
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.39 E-value=1.4e+02 Score=26.37 Aligned_cols=153 Identities=15% Similarity=0.193 Sum_probs=88.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC---CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh
Q 044047 61 LINGYCKTKDVEESLNLYSEMLSKGIRP---TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK 137 (260)
Q Consensus 61 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (260)
-+..+.+.+.+++|+...+.... ..| .......++..+.-.|++++|-...-.|... +..-|...+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 35556778888999888766543 233 2345667777888888998888888777543 34456666666766
Q ss_pred cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC---------CCCC-------chhhHHHH
Q 044047 138 NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV---------GLMP-------NVVTYNIM 201 (260)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~-------~~~~~~~l 201 (260)
.++......+ +.......++..|..++..+.. .+...-.++...-... ..+| +...-..|
T Consensus 436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~L 511 (846)
T KOG2066|consen 436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVL 511 (846)
T ss_pred ccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHH
Confidence 6666554332 2322223466677777776665 2322222222111000 0001 11223446
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 044047 202 IHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 202 ~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
+..|...+++..|..++-...+
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHccChHHHHHHHHhccC
Confidence 6777778888888877766554
No 457
>PRK12798 chemotaxis protein; Reviewed
Probab=57.32 E-value=1e+02 Score=24.85 Aligned_cols=154 Identities=13% Similarity=0.044 Sum_probs=78.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCCccchHHHHHHHh-ccccHHHHHHHHHHHhhc--CCCcchhhHHHHHHHHHhcCcHHHH
Q 044047 68 TKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLF-EIHQVEHALKLFDEMQHS--DVAAETSTYNTFIDGLCKNGYIVEA 144 (260)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 144 (260)
.|+-.++.+.+..+.....++....+..|+.+-. ...++..|+.+|++..-. |.-.......--+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 5677777777777666655556666666665433 345677777777775432 2111222333344455666776665
Q ss_pred HHHHHHhhhc-CCCcC-HHHHHHHHHHHHhcCCH---HHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 145 AELFRTLRVL-KCELG-IEAYSCLIDGLCKIGKL---ETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFL 219 (260)
Q Consensus 145 ~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 219 (260)
..+-...... ...|- ...+..+.....+.++- +....++..|.. .--...|..+.+.-...|+.+-|...-.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 5443332211 11121 12223333344443322 222222222221 1124567777777777777777766666
Q ss_pred HHHhC
Q 044047 220 DMEAK 224 (260)
Q Consensus 220 ~~~~~ 224 (260)
+....
T Consensus 282 ~A~~L 286 (421)
T PRK12798 282 RALKL 286 (421)
T ss_pred HHHHh
Confidence 66554
No 458
>PRK10941 hypothetical protein; Provisional
Probab=57.23 E-value=81 Score=23.71 Aligned_cols=61 Identities=8% Similarity=-0.130 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 128 YNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
.+.+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4455566777888888888888777665 556666666667777888888877777766554
No 459
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=56.49 E-value=42 Score=21.00 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=34.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (260)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3555566666677788888888877766777777667777777776543
No 460
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=56.40 E-value=1.8e+02 Score=27.38 Aligned_cols=156 Identities=12% Similarity=0.034 Sum_probs=92.5
Q ss_pred HHHhcCChHHHHH------HHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHH-------hhcCCCcchhhHHH
Q 044047 64 GYCKTKDVEESLN------LYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEM-------QHSDVAAETSTYNT 130 (260)
Q Consensus 64 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~ 130 (260)
.....|.+.++.+ ++......-.++....|..+...+.+.++.++|+..-... .....+.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444556665555 4442222212335667778888888889998887765443 22222334445666
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhc-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC-----CC--CCchh
Q 044047 131 FIDGLCKNGYIVEAAELFRTLRVL-------KCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV-----GL--MPNVV 196 (260)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~ 196 (260)
+...+...++...|...+...... ..|+...+++.+-..+...++++.|.++++.+... |. -.+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 665666666777777766654321 12444455565555566668888888888877543 11 12456
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFL 219 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~ 219 (260)
++..+.+.+...+++..|....+
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHh
Confidence 67777777777777776655443
No 461
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=55.54 E-value=1.1e+02 Score=24.84 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHH--------HHhcCChHHHHHH
Q 044047 6 RLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLING--------YCKTKDVEESLNL 77 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~ 77 (260)
++-..+....+.||..+.|.+...++..-..+-...+|+-..+.+ .|-...+-+++-. -.+...-++++++
T Consensus 169 elc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikf 247 (669)
T KOG3636|consen 169 ELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKF 247 (669)
T ss_pred HHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHH
Q ss_pred HHHHHhcCCCCCccchHHHHHHHh
Q 044047 78 YSEMLSKGIRPTVVTYNTLFHGLF 101 (260)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~ 101 (260)
++.|...=-.-|..-+..|...|+
T Consensus 248 Lenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 248 LENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HHcCchhcccccchhHHHHHHHHh
No 462
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=54.86 E-value=92 Score=23.66 Aligned_cols=114 Identities=9% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCC
Q 044047 131 FIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQ 210 (260)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (260)
++....+.++.......++.+. ....-...+......|++..|.+++....+ -...+..+-..-.-..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred hHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 211 MDKAHDLFLDMEAK-----GVAPNCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 211 ~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
+++-.....++.+. -..-|+..|..+..+|.-.|+...+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 463
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.53 E-value=98 Score=23.84 Aligned_cols=20 Identities=25% Similarity=0.652 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHhcCChHHH
Q 044047 195 VVTYNIMIHGFCNDGQMDKA 214 (260)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~a 214 (260)
..+|..|+.+++..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 45778888888888887654
No 464
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=54.49 E-value=1.3e+02 Score=25.24 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 128 YNTFIDGLCKNGYIVEAAELFRTLRVLKC-ELGIEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
...++.-|.+.+++++|..++..|.=... ..--...+.+++.+.+..--.+.+..++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 44677788888888888888887752211 01112334455555555434444444554443
No 465
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=53.80 E-value=52 Score=20.45 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHhhhhCC
Q 044047 129 NTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK--LETAWELFQSLPRVG 190 (260)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 190 (260)
..++.-|...++.++|...+.++... .........++..+...++ -+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 45566677778888888877775422 1222333444444443322 223344444444443
No 466
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=53.08 E-value=32 Score=19.71 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=11.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhh
Q 044047 208 DGQMDKAHDLFLDMEAKGVAPNCVT 232 (260)
Q Consensus 208 ~g~~~~a~~~~~~~~~~~~~p~~~~ 232 (260)
.|+.+.+.+++++..+.|.+|....
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~ 38 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDII 38 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 4444445555555544444444333
No 467
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=52.88 E-value=24 Score=16.43 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHH
Q 044047 211 MDKAHDLFLDMEAKGVAPNCVTFN 234 (260)
Q Consensus 211 ~~~a~~~~~~~~~~~~~p~~~~~~ 234 (260)
++.|..+|++.+. +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4455555555554 235554443
No 468
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=52.48 E-value=62 Score=20.96 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-ccchHHHHHHHhccccHHHHHHHHHH
Q 044047 37 DRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT-VVTYNTLFHGLFEIHQVEHALKLFDE 115 (260)
Q Consensus 37 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 115 (260)
+++.+.|..... ...|+.-....+..--.. ++..++|..|.+.|+-.. ..-|......+-..|++.+|.++|+.
T Consensus 50 erc~~~f~~~~~--YknD~RyLkiWi~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 50 ERCIRYFEDDER--YKNDPRYLKIWLKYADNC---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHhhhhhh--hcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 344445544333 244555444444332222 346778999988876544 44566777888899999999999863
No 469
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.86 E-value=39 Score=21.43 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=12.0
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH
Q 044047 132 IDGLCKNGYIVEAAELFRTLRVLKCELGIEA 162 (260)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (260)
+..+...+..-.|.++++.+...+...+..|
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~T 44 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLAT 44 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHH
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHH
Confidence 3333333334444444444444433333333
No 470
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=51.33 E-value=61 Score=20.52 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=13.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcC
Q 044047 63 NGYCKTKDVEESLNLYSEMLSKG 85 (260)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~ 85 (260)
..+.++...++|+++++-|.+.|
T Consensus 69 D~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 69 DYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33444555566666666666655
No 471
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.31 E-value=1.1e+02 Score=23.71 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHhhc-CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCCCccchHHHHHH-HhccccHHH
Q 044047 35 EIDRARELFVSMDIN-GCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLS----KGIRPTVVTYNTLFHG-LFEIHQVEH 108 (260)
Q Consensus 35 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~-~~~~~~~~~ 108 (260)
++++-.+..++..+. |-.--...+......|++-||.+.|++.+.+..+ .|.+.|...+.+-+.. |....-..+
T Consensus 83 ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~ 162 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTE 162 (393)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHH
Confidence 344444445555443 2223345677778889999999999888776544 4666666555443322 333333344
Q ss_pred HHHHHHHHhhcCCCcch----hhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 109 ALKLFDEMQHSDVAAET----STYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 109 a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
-++..+.+.+.|...+. .+|..+ .+....++.+|-.+|-+..
T Consensus 163 ~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 163 SIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHc
Confidence 44444445555533221 233322 2334567788877776654
No 472
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.86 E-value=1.8e+02 Score=25.78 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCCc---cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch----------hhHHHHHHHHHhcCCh
Q 044047 5 SRLLDLMIQRGVRP---NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV----------VTYNTLINGYCKTKDV 71 (260)
Q Consensus 5 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~ 71 (260)
.+.+++|+.+=-.| ++.+...++-.|....+++...++.+.+.+. ||. ..|...++---+-||-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 35566777652222 3455666777777777888888888887654 221 1244444444556777
Q ss_pred HHHHHHHHHHHhcCCCCCccchHHHHH---------HHhccccHHHHHHHHHHHhh
Q 044047 72 EESLNLYSEMLSKGIRPTVVTYNTLFH---------GLFEIHQVEHALKLFDEMQH 118 (260)
Q Consensus 72 ~~a~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~a~~~~~~~~~ 118 (260)
++|+...-.+.+..-...+..|....+ .|...+..+.|.+.|++.-+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 888887777766432222333333222 23345566777777777654
No 473
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.78 E-value=1.1e+02 Score=23.36 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=59.2
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCCCccchH-HHHHHHhccccHHHHHHHHHHHhhcCCCcch--
Q 044047 53 HNVVTYNTLINGYCKTKDVEESLNLYSEMLS----KGIRPTVVTYN-TLFHGLFEIHQVEHALKLFDEMQHSDVAAET-- 125 (260)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 125 (260)
.-..++..+...|++.+|.+.+.++..+..+ .|.+.|..... .+.-.|....-.++.++..+.+.+.|...+.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3466788899999999999988887776654 35554443222 2233344555567777777888877744322
Q ss_pred --hhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 126 --STYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 126 --~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
.+|.-+ .+....++.+|-.++.+..
T Consensus 193 RyK~Y~Gi--~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 193 RYKVYKGI--FKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hHHHHHHH--HHHHHHhhHHHHHHHHHHh
Confidence 122222 1233456777777766654
No 474
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=50.61 E-value=89 Score=22.23 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDIN 49 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 49 (260)
..+.+++.|...|+++.|-++|.-+.+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4455666666677777777777666554
No 475
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=49.40 E-value=1.9e+02 Score=25.62 Aligned_cols=30 Identities=13% Similarity=0.010 Sum_probs=19.1
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 044047 16 VRPNAFVYSTLIDGFCLTGEIDRARELFVSMD 47 (260)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 47 (260)
+..+......++... .|+..+++.+++.+.
T Consensus 193 v~I~deaL~~La~~s--~GD~R~lln~Le~a~ 222 (725)
T PRK13341 193 VDLEPEAEKHLVDVA--NGDARSLLNALELAV 222 (725)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 444555666555543 678888888777654
No 476
>PRK09857 putative transposase; Provisional
Probab=49.18 E-value=1.2e+02 Score=23.19 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 044047 198 YNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDERN 260 (260)
Q Consensus 198 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 260 (260)
+..++....+.++.++..++++.+.+. .++.......+.+-+.+.|.-+++.++.++|...|
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g 270 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESG 270 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455666666778777778888777665 34444555567777777787788888888887665
No 477
>PRK12798 chemotaxis protein; Reviewed
Probab=48.98 E-value=1.4e+02 Score=24.08 Aligned_cols=217 Identities=15% Similarity=0.095 Sum_probs=125.6
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHh--ccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh-cCChHHHHHHHHHHHh
Q 044047 7 LLDLMIQRGVRPNAFVYSTLIDGFC--LTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK-TKDVEESLNLYSEMLS 83 (260)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 83 (260)
+++.+...+..++.. +.++.+.. -.|+.+++.+.+..+.....++....|-.|+.+-.- ..+...|+++|+...-
T Consensus 99 vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL 176 (421)
T PRK12798 99 TLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL 176 (421)
T ss_pred HHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 445555555443332 22333322 368999999999998877778888888888876544 5689999999998764
Q ss_pred cCCCCCc----cchHHHHHHHhccccHHHHHHHHHHHhhc-CCCcchh-hHHHHHHHHHhcCc---HHHHHHHHHHhhhc
Q 044047 84 KGIRPTV----VTYNTLFHGLFEIHQVEHALKLFDEMQHS-DVAAETS-TYNTFIDGLCKNGY---IVEAAELFRTLRVL 154 (260)
Q Consensus 84 ~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 154 (260)
. -|.+ .....-+......|+.+++..+-.+.... ...|-.. .+..+...+.+.++ .+....++..|..
T Consensus 177 l--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~- 253 (421)
T PRK12798 177 L--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP- 253 (421)
T ss_pred h--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc-
Confidence 3 2322 23334445567888888877665554332 1122222 22233334444433 2233333333321
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCch-----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 044047 155 KCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNV-----VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN 229 (260)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 229 (260)
.--...|..+.+.-.-.|+.+.|...-.+.....-..+. ..|..... .-..+++.+.+.+..+-...+.|.
T Consensus 254 --~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~--v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 254 --ERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAAL--VASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred --hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHc--cCcccHHHHHHHHhcCChhhCChh
Confidence 223457888889999999999888887777665322111 12222211 235567788887777766655554
Q ss_pred hhh
Q 044047 230 CVT 232 (260)
Q Consensus 230 ~~~ 232 (260)
...
T Consensus 330 Dr~ 332 (421)
T PRK12798 330 DRA 332 (421)
T ss_pred hHH
Confidence 443
No 478
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.36 E-value=1.2e+02 Score=26.09 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=44.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
.+..+--+|....+.|.|.+++++..+.+ +.+..+--.+.......|..++|+.+......
T Consensus 396 ~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 396 IQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 45566667778889999999999988765 44555555666777777888888887776543
No 479
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=47.28 E-value=1e+02 Score=21.95 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGI 160 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (260)
...+.++..+...|+++.|.+.|.-+.... +.|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDi 75 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDI 75 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCCh
Confidence 345667777777888888888887777654 4443
No 480
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=47.14 E-value=38 Score=27.28 Aligned_cols=150 Identities=18% Similarity=0.259 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhh------cCCCC---chhhHHHHHHHH-----Hh
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDI------NGCMH---NVVTYNTLINGY-----CK 67 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~---~~~~~~~l~~~~-----~~ 67 (260)
++-+++++.+.+.| .+| ....-++.|.+.++++.|.+....-.+ .|+|. .......++.+. .+
T Consensus 28 ~e~~~~l~~l~~~g-~~d--vl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~PlqvR 104 (428)
T cd00245 28 EEHIELLRTLQEEG-AAD--VLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDFPVQVR 104 (428)
T ss_pred HHHHHHHHHHHhcC-CCC--eeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCCCEeec
Confidence 34456666676665 223 334457888899999999888887642 23332 222344444432 12
Q ss_pred cCChHHHHHHHHHHHhcCCCCC---ccchHHHHHHHhccccHHHHHHHH---HH----HhhcCCCcchhhHHHHHHHHHh
Q 044047 68 TKDVEESLNLYSEMLSKGIRPT---VVTYNTLFHGLFEIHQVEHALKLF---DE----MQHSDVAAETSTYNTFIDGLCK 137 (260)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~---~~----~~~~~~~~~~~~~~~l~~~~~~ 137 (260)
.|. ..+..+++-+...|.... ..+|+. -|.+.-.+++++..| ++ ..+.|++.+..+|.-+...++
T Consensus 105 hGt-~d~~~l~e~~~a~g~~a~egg~isy~~---py~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~~l~- 179 (428)
T cd00245 105 HGT-PDARLLAEIAIASGFDATEGGPISYNL---PYSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTGTLV- 179 (428)
T ss_pred cCC-ccHHHHHHHHHHhCcccccccceeecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcccCcC-
Confidence 222 356666766666664422 334433 244444555555555 22 245666666666555331111
Q ss_pred cCcHHHHHHHHHHhhhcCCCcC
Q 044047 138 NGYIVEAAELFRTLRVLKCELG 159 (260)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~ 159 (260)
---+..|..+++.+...+...+
T Consensus 180 pptla~aiaylea~la~glgV~ 201 (428)
T cd00245 180 PPSILIAIQILEALLAAEQGVK 201 (428)
T ss_pred CcHHHHHHHHHHHHHHccCCCC
Confidence 1123445666666655544433
No 481
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=46.63 E-value=47 Score=20.28 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=40.2
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc
Q 044047 31 CLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVV 91 (260)
Q Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (260)
.+..++..|..+|..+.+.|. .+...+..+...+..-++.+-- ..+..-++..+.|+++
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~~ 93 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGR-CDETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDLV 93 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCC-CccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCchh
Confidence 455678889999999999984 4444555677777777776655 5555555555666543
No 482
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=46.06 E-value=1.3e+02 Score=22.93 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhcCC----CcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 044047 106 VEHALKLFDEMQHSDV----AAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWE 181 (260)
Q Consensus 106 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 181 (260)
.+.|.+.|+.....+. ..++.....+.....+.|+.+.-..+++.... ..+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677788888766422 23445555666667777776665555555553 3466677888888888889888888
Q ss_pred HHHhhhhCC-CCCchhhHHHHHHHHHhcCCh--HHHHHHHH
Q 044047 182 LFQSLPRVG-LMPNVVTYNIMIHGFCNDGQM--DKAHDLFL 219 (260)
Q Consensus 182 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~ 219 (260)
+++.+...+ ++ +... ..++.++...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~-~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVR-SQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS--TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccc-cHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 888888754 43 3333 3344444423332 55555544
No 483
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=45.88 E-value=1.5e+02 Score=23.33 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhhCCCCCch----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 044047 177 ETAWELFQSLPRVGLMPNV----VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCI 241 (260)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 241 (260)
++...++..+... .|+. .-|-.+++.....|.++.++.+|++++..|..|-...-..++..+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3555555555543 2332 3455666666667777777777777777777766665555555543
No 484
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=45.78 E-value=1e+02 Score=23.84 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCCCccchH
Q 044047 16 VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNT-LINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYN 94 (260)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (260)
...|+..|...+.-..+.|.+.+...+|.++.... |.|+..|.. .-.-+...++++.+..+|.+-.+-+.. ++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHH
Q ss_pred HHHHH
Q 044047 95 TLFHG 99 (260)
Q Consensus 95 ~l~~~ 99 (260)
...+.
T Consensus 181 eyfr~ 185 (435)
T COG5191 181 EYFRM 185 (435)
T ss_pred HHHHH
No 485
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.46 E-value=66 Score=19.28 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=40.5
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCC-chhhHHHHHHHHHhcCCh
Q 044047 8 LDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMH-NVVTYNTLINGYCKTKDV 71 (260)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 71 (260)
++.-...+ |.|...-..+...+...|+++.|++.+-.+.+.+... +...-..++..+...|.-
T Consensus 11 l~~~~a~~-P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 11 LEAALAAN-PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 33344443 4577778889999999999999999998888764222 344555666666555553
No 486
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.78 E-value=1.8e+02 Score=24.19 Aligned_cols=108 Identities=10% Similarity=-0.005 Sum_probs=66.0
Q ss_pred HHHHhcCChHHHHHHHHHHH---hcCCC--C---CccchHHHHHHHhccccHHHHHHHHHHHhh-------cCCCcch--
Q 044047 63 NGYCKTKDVEESLNLYSEML---SKGIR--P---TVVTYNTLFHGLFEIHQVEHALKLFDEMQH-------SDVAAET-- 125 (260)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~---~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 125 (260)
..+.-.|++.+|.+++-..- ..|.. | .-..||.+.-...+.|.+..+..+|....+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 44566789999988875431 11211 1 122345665555666666666666655442 3433321
Q ss_pred --------hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHH
Q 044047 126 --------STYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLC 171 (260)
Q Consensus 126 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (260)
.......-.|...|++..|.+.|.+.... +..++..|-.+..+|.
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 11223445677889999999999887654 3668888888888875
No 487
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.76 E-value=75 Score=19.66 Aligned_cols=20 Identities=15% Similarity=-0.021 Sum_probs=9.1
Q ss_pred HHHHHHHhcCcHHHHHHHHH
Q 044047 130 TFIDGLCKNGYIVEAAELFR 149 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~ 149 (260)
.|.-.|++.|+.+.+.+-|+
T Consensus 77 hLGlLys~~G~~e~a~~eFe 96 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFE 96 (121)
T ss_pred HHHHHHhhcCChHHHHHHHH
Confidence 34444444444444444444
No 488
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.54 E-value=1.1e+02 Score=21.69 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCC--------------CCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 044047 164 SCLIDGLCKIGKLETAWELFQSLPRVGL--------------MPNVVTYNIMIHGFCNDGQMDKAHDLFLD 220 (260)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 220 (260)
-+++..|.+.-+|.++.++++.+.+..+ .+.-...|.....+.+.|..+.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3456677777888888888888765422 12223456667778888888888888773
No 489
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.44 E-value=1.2e+02 Score=22.03 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=56.3
Q ss_pred hHHHHHHHh--ccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHH
Q 044047 93 YNTLFHGLF--EIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGL 170 (260)
Q Consensus 93 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (260)
|..+++++. ..+++++|...+-. ..+.| ..-..++.++...|+.+.|..+++..... ..+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH---PSLIP--WFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC---CCCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-
Confidence 334444443 34556666665522 12222 22235667777778888888877765422 1223333333333
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcC
Q 044047 171 CKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDG 209 (260)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (260)
..++.+.+|+.+-+...+.. ....+..++..+....
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 55677888877776655421 1345666666665433
No 490
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.33 E-value=51 Score=29.30 Aligned_cols=81 Identities=11% Similarity=0.172 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 044047 159 GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLML 238 (260)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 238 (260)
+..+|..|.......|+.+-|+..|+..+. |+.|-..|.-.|+.++-.++.+..... -|.. ....
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r---~D~~---~~~q 735 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR---NDAT---GQFQ 735 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh---hhhH---HHHH
Confidence 445555555555555555555555544332 222223344455555554444433322 1211 1222
Q ss_pred HHHhcCchhHHHHHHH
Q 044047 239 GCIRNNETSKVVELLH 254 (260)
Q Consensus 239 ~~~~~~~~~~a~~~~~ 254 (260)
...-.|+.++-..+++
T Consensus 736 nalYl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 736 NALYLGDVKERVKILE 751 (1202)
T ss_pred HHHHhccHHHHHHHHH
Confidence 2334566666666554
No 491
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=44.18 E-value=2.4e+02 Score=25.30 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=14.7
Q ss_pred hHHHHHHHhccccHHHHHHHHHHHhhcCC
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDEMQHSDV 121 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 121 (260)
+..++..+.. ++...++.+++++...|.
T Consensus 249 i~~ll~aL~~-~d~~~~l~~~~~l~~~g~ 276 (830)
T PRK07003 249 MVRLLDALAA-GDGPEILAVADEMALRSL 276 (830)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCC
Confidence 4444443333 556666666666665554
No 492
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.08 E-value=1.3e+02 Score=22.25 Aligned_cols=133 Identities=13% Similarity=0.080 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc----C-CCCCccchHHHHHHHhcc-ccHHHHHHHHHHHhhc--CCCcchhh-
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSK----G-IRPTVVTYNTLFHGLFEI-HQVEHALKLFDEMQHS--DVAAETST- 127 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~--~~~~~~~~- 127 (260)
+|.....+| +..++++|...++...+. | ...-...+..+...|-.. .+++.|+..|++.-+- |-..+...
T Consensus 76 ~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 344444433 444777777666655442 1 000111122344444433 5677788887776431 11222222
Q ss_pred --HHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHH---H---HHHHHhcCCHHHHHHHHHhhhhCC
Q 044047 128 --YNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSC---L---IDGLCKIGKLETAWELFQSLPRVG 190 (260)
Q Consensus 128 --~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l---~~~~~~~~~~~~a~~~~~~~~~~~ 190 (260)
+.-....-+..+++.+|+++|+++.......+.--|+. + .-++....+.-.+...+++..+..
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 22333344568899999999999876554333222221 1 111122245556666666666543
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=43.79 E-value=56 Score=17.98 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=5.2
Q ss_pred cCcHHHHHHHHHHh
Q 044047 138 NGYIVEAAELFRTL 151 (260)
Q Consensus 138 ~~~~~~a~~~~~~~ 151 (260)
.|++-+|-++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 33344444444433
No 494
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.62 E-value=1.6e+02 Score=23.27 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=62.8
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHH-------hcCC-----C-------------CCccchH---HHHHHHhcc
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEML-------SKGI-----R-------------PTVVTYN---TLFHGLFEI 103 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~-----~-------------~~~~~~~---~l~~~~~~~ 103 (260)
|-...++..+...+...|+.+.|.+++++.. .... . -|...|. ..+..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 4556666667777777777666666655542 1111 0 0222222 234566778
Q ss_pred ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHH-hcCcHHHHHHHHHHhhh
Q 044047 104 HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLC-KNGYIVEAAELFRTLRV 153 (260)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 153 (260)
|.+..|+++.+-+...+..-|+......|+.|+ +.++++-.+++.+....
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 888888888888887774446766667777654 56677777777766544
No 495
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=43.60 E-value=93 Score=20.42 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=22.7
Q ss_pred chHHHHHHHhccccHHHHHHHHHHHhhcCCC
Q 044047 92 TYNTLFHGLFEIHQVEHALKLFDEMQHSDVA 122 (260)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 122 (260)
++..++--+...|+++.|+.+.+...+.|.+
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3444455566888999999988888888754
No 496
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.50 E-value=1.3e+02 Score=24.37 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=38.0
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhc--C-CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 95 TLFHGLFEIHQVEHALKLFDEMQHS--D-VAAETSTYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
.|++...-.|+++...+.++.+.+. | ++.-..| ..+.-+|...+++.+|.+.|-.+.
T Consensus 240 GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 240 GLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 3556666678887777888777543 2 2222334 456677888889999998887654
No 497
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=43.34 E-value=96 Score=20.72 Aligned_cols=44 Identities=9% Similarity=0.113 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 39 ARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 39 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
...+|..+....++++...--.-+--++..+++.+|-+.|-+|.
T Consensus 43 l~PL~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And~Yl~Ls 86 (144)
T PF02840_consen 43 LKPLFKKLKKRTLPEDILDSLATIVYHLQQREYVKANDAYLKLS 86 (144)
T ss_dssp HHHHHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566666666666665544444445566778888888777764
No 498
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=43.23 E-value=68 Score=18.79 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=34.0
Q ss_pred HHHHHHHHHhccCCHHH---HHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 22 VYSTLIDGFCLTGEIDR---ARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYS 79 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 79 (260)
....+...+.-.+..+. +.++|..+.+.+ ..++.-...+...+...|+.+-+..+.+
T Consensus 19 ~lkfL~~d~i~~~~~~~~~~~~dlf~~Le~~~-~i~~~nl~~L~~lL~~i~R~DL~~~i~~ 78 (84)
T PF01335_consen 19 SLKFLCKDHIPRSKLEEIKSGLDLFEELEKRG-LISPDNLSLLKELLKRIGRPDLLKKIEE 78 (84)
T ss_dssp HHHHHCTTTSTCHCHHHTSSHHHHHHHHHHTT-SSSTTBHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHcCchhhhhhchHHHHHHHHHHcC-CCCCccHHHHHHHHHHhCHHHHHHHHHH
Confidence 33333333333444443 778888888776 4455556677777777787776666554
No 499
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=43.12 E-value=2.2e+02 Score=24.60 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhc
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKT 68 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 68 (260)
..|- +|--|.++|++++|.++....... .......+...+..+...
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3453 566788999999999999665443 355667777788887765
No 500
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.60 E-value=1.6e+02 Score=22.95 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=77.5
Q ss_pred CCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhh----hhCCCCCc
Q 044047 120 DVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL-KCELGIEAYSCLIDGLCKIGKLETAWELFQSL----PRVGLMPN 194 (260)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~ 194 (260)
.+..|...++.+... +....++-.+..+...+. |-.--...+-.....|++.|+.+.|.+.++.. ...|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 344555555554432 222333333444444432 22223456677788999999999998888664 44566667
Q ss_pred hhhHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 195 VVTYNI-MIHGFCNDGQMDKAHDLFLDMEAKGVAPNC----VTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 195 ~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
...+.. +.-.|..+.-..+-++..+.+.+.|-.-+. .+|..+- |....++.+|-.+|-+..
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 654443 223344455566677777777787754433 3444332 445678888888876543
Done!