Query 044047
Match_columns 260
No_of_seqs 587 out of 1307
Neff 12.2
Searched_HMMs 29240
Date Mon Mar 25 19:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 9.8E-38 3.4E-42 245.3 23.8 206 3-208 8-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 8.6E-38 2.9E-42 245.6 22.4 207 37-243 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 3.4E-28 1.1E-32 197.1 28.8 250 3-258 323-578 (597)
4 2xpi_A Anaphase-promoting comp 100.0 2E-28 6.9E-33 198.4 27.0 251 2-259 289-545 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 7.2E-24 2.4E-28 163.1 31.2 249 3-258 119-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 6.1E-24 2.1E-28 163.5 29.0 251 2-258 50-333 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.2E-22 4.1E-27 159.1 28.1 182 2-188 43-239 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 2E-22 7E-27 157.8 28.6 250 2-259 77-358 (450)
9 3hym_B Cell division cycle pro 99.9 3E-22 1E-26 150.5 27.6 252 1-258 38-298 (330)
10 1fch_A Peroxisomal targeting s 99.9 1.1E-21 3.7E-26 149.8 26.9 249 2-256 81-356 (368)
11 4eqf_A PEX5-related protein; a 99.9 2.8E-22 9.4E-27 153.0 23.5 248 2-255 82-352 (365)
12 3cv0_A Peroxisome targeting si 99.9 8.4E-22 2.9E-26 147.9 25.5 250 2-257 38-313 (327)
13 4eqf_A PEX5-related protein; a 99.9 9.1E-22 3.1E-26 150.2 23.6 234 19-258 64-309 (365)
14 3ieg_A DNAJ homolog subfamily 99.9 5.3E-20 1.8E-24 139.7 29.4 251 2-258 20-334 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 7.2E-20 2.4E-24 139.0 30.1 210 27-242 127-352 (359)
16 3hym_B Cell division cycle pro 99.9 1.9E-20 6.4E-25 140.7 26.0 238 16-258 18-264 (330)
17 1fch_A Peroxisomal targeting s 99.9 5.4E-21 1.9E-25 145.9 22.9 233 20-258 64-313 (368)
18 2gw1_A Mitochondrial precursor 99.9 6.5E-20 2.2E-24 145.8 25.0 250 2-258 23-366 (514)
19 3cv0_A Peroxisome targeting si 99.9 6.9E-20 2.3E-24 137.4 23.8 234 19-258 20-268 (327)
20 2gw1_A Mitochondrial precursor 99.9 6E-20 2E-24 146.1 23.4 252 2-259 206-478 (514)
21 3mkr_A Coatomer subunit epsilo 99.9 9E-20 3.1E-24 134.6 22.6 225 21-258 35-263 (291)
22 2pl2_A Hypothetical conserved 99.9 8.6E-20 2.9E-24 129.1 21.3 199 17-221 2-211 (217)
23 3fp2_A TPR repeat-containing p 99.9 5.9E-19 2E-23 141.1 27.3 251 1-258 41-406 (537)
24 2pl2_A Hypothetical conserved 99.9 1.1E-19 3.7E-24 128.6 20.5 201 52-258 2-213 (217)
25 3uq3_A Heat shock protein STI1 99.9 3.7E-19 1.3E-23 128.9 23.7 226 19-258 4-235 (258)
26 3fp2_A TPR repeat-containing p 99.9 6.7E-19 2.3E-23 140.8 26.1 250 2-258 219-490 (537)
27 3spa_A Mtrpol, DNA-directed RN 99.9 1.3E-21 4.6E-26 159.9 9.0 151 19-174 126-286 (1134)
28 3u4t_A TPR repeat-containing p 99.8 1.8E-18 6.1E-23 126.5 24.5 235 19-259 2-250 (272)
29 3spa_A Mtrpol, DNA-directed RN 99.8 3.1E-21 1.1E-25 157.8 9.8 115 126-240 128-246 (1134)
30 1ouv_A Conserved hypothetical 99.8 3.7E-17 1.3E-21 119.7 30.0 225 18-260 4-252 (273)
31 2h6f_A Protein farnesyltransfe 99.8 4.2E-18 1.4E-22 129.8 23.8 233 19-258 96-347 (382)
32 2vq2_A PILW, putative fimbrial 99.8 1.4E-17 4.8E-22 118.1 25.0 214 17-235 5-220 (225)
33 2ho1_A Type 4 fimbrial biogene 99.8 1E-17 3.6E-22 121.1 24.4 201 20-224 37-238 (252)
34 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.3E-18 4.3E-23 127.4 19.7 242 2-253 22-269 (275)
35 3mkr_A Coatomer subunit epsilo 99.8 1.5E-17 5E-22 122.8 24.9 223 16-253 61-288 (291)
36 2q7f_A YRRB protein; TPR, prot 99.8 1.7E-18 5.7E-23 124.5 19.4 213 18-236 21-233 (243)
37 3uq3_A Heat shock protein STI1 99.8 5.9E-18 2E-22 122.6 22.2 209 2-224 22-236 (258)
38 2ho1_A Type 4 fimbrial biogene 99.8 2.9E-17 9.8E-22 118.8 24.1 201 55-259 37-238 (252)
39 1b89_A Protein (clathrin heavy 99.8 1.4E-19 4.6E-24 137.5 10.4 216 2-258 20-235 (449)
40 2q7f_A YRRB protein; TPR, prot 99.8 1.1E-17 3.8E-22 120.1 19.5 202 53-259 21-222 (243)
41 2vq2_A PILW, putative fimbrial 99.8 6.4E-17 2.2E-21 114.7 23.2 204 52-258 5-210 (225)
42 3u4t_A TPR repeat-containing p 99.8 4.5E-17 1.6E-21 119.0 21.4 231 2-239 20-264 (272)
43 2h6f_A Protein farnesyltransfe 99.8 1.6E-16 5.5E-21 121.2 23.6 233 1-242 113-365 (382)
44 1xnf_A Lipoprotein NLPI; TPR, 99.8 5.4E-17 1.8E-21 118.7 19.3 224 30-259 15-244 (275)
45 2ond_A Cleavage stimulation fa 99.8 1E-15 3.4E-20 114.1 26.0 217 2-224 33-270 (308)
46 2ond_A Cleavage stimulation fa 99.8 1.7E-15 5.9E-20 112.8 26.9 236 19-259 7-270 (308)
47 4abn_A Tetratricopeptide repea 99.8 9E-17 3.1E-21 126.6 20.1 192 19-216 101-313 (474)
48 3vtx_A MAMA; tetratricopeptide 99.8 5.3E-16 1.8E-20 106.7 20.9 167 19-189 4-170 (184)
49 1ouv_A Conserved hypothetical 99.8 5.1E-15 1.8E-19 108.3 26.4 206 2-225 23-252 (273)
50 4abn_A Tetratricopeptide repea 99.8 1.5E-16 5.2E-21 125.3 18.9 215 36-256 84-318 (474)
51 3nf1_A KLC 1, kinesin light ch 99.7 4.3E-17 1.5E-21 121.3 14.6 241 17-258 24-306 (311)
52 3vtx_A MAMA; tetratricopeptide 99.7 1.4E-15 4.7E-20 104.6 20.8 172 53-230 3-174 (184)
53 4a1s_A PINS, partner of inscut 99.7 6.4E-17 2.2E-21 125.2 15.5 256 2-258 65-371 (411)
54 2xm6_A Protein corresponding t 99.7 5.9E-14 2E-18 111.2 31.9 236 2-258 60-324 (490)
55 3ro2_A PINS homolog, G-protein 99.7 2.2E-16 7.4E-21 118.6 16.4 256 2-258 22-331 (338)
56 3sf4_A G-protein-signaling mod 99.7 3.4E-16 1.1E-20 120.8 17.4 256 2-258 26-335 (406)
57 1b89_A Protein (clathrin heavy 99.7 6.3E-17 2.1E-21 123.0 12.7 206 2-243 49-254 (449)
58 2xm6_A Protein corresponding t 99.7 1.9E-13 6.3E-18 108.4 32.2 240 2-259 96-396 (490)
59 3ulq_A Response regulator aspa 99.7 9.6E-15 3.3E-19 112.1 21.3 231 26-258 109-367 (383)
60 4g1t_A Interferon-induced prot 99.7 9.3E-15 3.2E-19 115.1 21.2 253 2-259 155-459 (472)
61 4a1s_A PINS, partner of inscut 99.7 1.6E-15 5.4E-20 117.4 16.2 239 19-258 47-331 (411)
62 4gyw_A UDP-N-acetylglucosamine 99.7 7.3E-15 2.5E-19 120.4 19.9 168 17-188 6-173 (723)
63 3as5_A MAMA; tetratricopeptide 99.7 2.7E-14 9.3E-19 97.9 19.0 165 20-188 8-172 (186)
64 3sf4_A G-protein-signaling mod 99.7 6.7E-15 2.3E-19 113.5 16.5 241 17-258 6-295 (406)
65 4gyw_A UDP-N-acetylglucosamine 99.7 2E-14 6.9E-19 117.9 19.7 168 52-223 6-173 (723)
66 3ro2_A PINS homolog, G-protein 99.6 1.2E-14 4E-19 109.1 16.9 239 19-258 4-291 (338)
67 4g1t_A Interferon-induced prot 99.6 3.7E-13 1.3E-17 106.0 25.1 184 2-188 68-275 (472)
68 4i17_A Hypothetical protein; T 99.6 1.3E-13 4.4E-18 98.1 20.3 201 18-231 5-214 (228)
69 3as5_A MAMA; tetratricopeptide 99.6 7.5E-14 2.6E-18 95.7 18.5 166 55-224 8-173 (186)
70 3q15_A PSP28, response regulat 99.6 1.9E-13 6.5E-18 104.7 21.6 232 24-258 105-364 (378)
71 2ooe_A Cleavage stimulation fa 99.6 6.3E-13 2.2E-17 106.3 25.2 217 3-224 256-492 (530)
72 4i17_A Hypothetical protein; T 99.6 2.5E-13 8.4E-18 96.6 20.6 194 53-258 5-208 (228)
73 1hz4_A MALT regulatory protein 99.6 7.7E-13 2.6E-17 101.1 24.2 257 2-258 31-321 (373)
74 3nf1_A KLC 1, kinesin light ch 99.6 9.6E-15 3.3E-19 108.6 12.9 221 2-223 44-306 (311)
75 3edt_B KLC 2, kinesin light ch 99.6 3.2E-14 1.1E-18 104.2 15.4 226 32-258 13-280 (283)
76 3edt_B KLC 2, kinesin light ch 99.6 1.9E-14 6.6E-19 105.3 14.2 221 3-224 26-281 (283)
77 1qqe_A Vesicular transport pro 99.6 1.4E-13 4.9E-18 101.6 18.6 234 1-256 1-266 (292)
78 2ooe_A Cleavage stimulation fa 99.6 1.7E-12 5.7E-17 103.9 24.9 218 37-258 255-491 (530)
79 1xi4_A Clathrin heavy chain; a 99.6 2.3E-12 7.7E-17 109.8 25.8 204 19-257 1104-1307(1630)
80 3ulq_A Response regulator aspa 99.6 1.9E-13 6.4E-18 104.9 18.1 219 2-223 120-367 (383)
81 1hz4_A MALT regulatory protein 99.5 1.1E-11 3.7E-16 94.7 23.6 237 22-258 16-281 (373)
82 3qky_A Outer membrane assembly 99.5 3E-12 1E-16 92.9 18.3 212 17-250 12-252 (261)
83 3urz_A Uncharacterized protein 99.5 4.1E-12 1.4E-16 89.0 18.0 188 20-233 4-193 (208)
84 3e4b_A ALGK; tetratricopeptide 99.5 8.7E-12 3E-16 97.7 21.6 188 57-260 178-388 (452)
85 3e4b_A ALGK; tetratricopeptide 99.5 7.4E-11 2.5E-15 92.4 26.5 188 22-225 178-388 (452)
86 3urz_A Uncharacterized protein 99.5 3E-12 1E-16 89.7 16.5 128 128-259 57-186 (208)
87 2pzi_A Probable serine/threoni 99.5 1E-12 3.5E-17 108.0 16.2 173 31-210 402-583 (681)
88 3qky_A Outer membrane assembly 99.5 6.3E-12 2.1E-16 91.2 18.2 188 52-259 12-224 (261)
89 3q15_A PSP28, response regulat 99.5 7.1E-12 2.4E-16 96.0 18.5 219 2-223 118-364 (378)
90 1qqe_A Vesicular transport pro 99.5 5.4E-12 1.8E-16 93.2 17.1 201 21-223 38-268 (292)
91 2fo7_A Synthetic consensus TPR 99.5 9E-12 3.1E-16 80.5 16.3 127 23-152 4-130 (136)
92 4ga2_A E3 SUMO-protein ligase 99.5 1E-12 3.5E-17 87.1 11.1 145 26-174 3-148 (150)
93 2fo7_A Synthetic consensus TPR 99.5 1.3E-11 4.5E-16 79.7 16.2 125 96-223 7-131 (136)
94 3dra_A Protein farnesyltransfe 99.5 4.6E-10 1.6E-14 82.7 26.0 216 37-257 50-285 (306)
95 3dra_A Protein farnesyltransfe 99.4 2.8E-10 9.4E-15 83.8 24.4 228 2-235 50-298 (306)
96 1xi4_A Clathrin heavy chain; a 99.4 5.9E-11 2E-15 101.4 23.3 186 32-253 1088-1273(1630)
97 2pzi_A Probable serine/threoni 99.4 3.1E-12 1.1E-16 105.1 15.2 179 2-186 408-602 (681)
98 3qou_A Protein YBBN; thioredox 99.4 9.5E-12 3.2E-16 91.6 16.3 168 52-223 114-283 (287)
99 3rjv_A Putative SEL1 repeat pr 99.4 5E-11 1.7E-15 83.7 19.2 141 3-153 4-157 (212)
100 3mv2_B Coatomer subunit epsilo 99.4 1.3E-10 4.5E-15 84.9 21.2 178 74-258 85-281 (310)
101 4ga2_A E3 SUMO-protein ligase 99.4 6.2E-12 2.1E-16 83.3 12.8 146 96-245 3-149 (150)
102 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.5E-10 5.1E-15 82.1 20.5 187 19-224 3-213 (225)
103 3rjv_A Putative SEL1 repeat pr 99.4 9.6E-11 3.3E-15 82.3 19.2 177 38-226 4-199 (212)
104 2r5s_A Uncharacterized protein 99.4 2.2E-11 7.5E-16 82.9 15.0 162 92-257 8-171 (176)
105 3qou_A Protein YBBN; thioredox 99.4 3.3E-11 1.1E-15 88.7 16.3 168 87-258 114-283 (287)
106 2vsy_A XCC0866; transferase, g 99.4 2.2E-11 7.6E-16 98.2 16.7 150 2-155 6-158 (568)
107 2r5s_A Uncharacterized protein 99.4 7.6E-12 2.6E-16 85.2 11.9 61 23-84 9-69 (176)
108 3mv2_B Coatomer subunit epsilo 99.4 1.9E-10 6.4E-15 84.1 19.7 184 39-231 85-287 (310)
109 2vsy_A XCC0866; transferase, g 99.4 4.9E-11 1.7E-15 96.2 17.1 154 68-225 2-158 (568)
110 2yhc_A BAMD, UPF0169 lipoprote 99.4 2.7E-10 9.3E-15 80.7 18.9 184 54-259 3-213 (225)
111 2ifu_A Gamma-SNAP; membrane fu 99.3 1.4E-10 4.7E-15 86.2 16.3 130 92-222 78-222 (307)
112 4e6h_A MRNA 3'-END-processing 99.3 1.4E-09 4.7E-14 88.7 21.7 231 4-239 328-583 (679)
113 3q7a_A Farnesyltransferase alp 99.3 8E-09 2.7E-13 77.0 22.7 225 29-258 63-330 (349)
114 3q7a_A Farnesyltransferase alp 99.3 1.7E-08 5.9E-13 75.2 24.5 218 2-224 71-331 (349)
115 2ifu_A Gamma-SNAP; membrane fu 99.2 1.4E-09 4.8E-14 80.8 18.3 213 2-217 8-254 (307)
116 3u3w_A Transcriptional activat 99.2 9.2E-09 3.1E-13 75.9 22.2 164 60-223 80-265 (293)
117 3u3w_A Transcriptional activat 99.2 5.1E-09 1.7E-13 77.2 20.3 164 25-188 80-265 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.9E-09 6.4E-14 75.5 17.2 127 21-153 7-149 (213)
119 4gco_A Protein STI-1; structur 99.2 4.1E-10 1.4E-14 72.1 12.6 108 20-130 13-120 (126)
120 2c2l_A CHIP, carboxy terminus 99.2 1.1E-10 3.6E-15 85.7 11.0 195 18-223 2-198 (281)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.3E-09 7.9E-14 75.1 17.1 144 57-205 8-166 (213)
122 4e6h_A MRNA 3'-END-processing 99.2 1.2E-08 4E-13 83.3 23.0 235 21-258 303-569 (679)
123 2qfc_A PLCR protein; TPR, HTH, 99.2 1.4E-08 4.9E-13 74.8 21.2 168 55-222 75-264 (293)
124 1a17_A Serine/threonine protei 99.2 1.7E-09 5.7E-14 72.5 14.9 129 20-151 13-143 (166)
125 4f3v_A ESX-1 secretion system 99.2 1.9E-09 6.4E-14 77.9 15.5 197 32-236 18-247 (282)
126 4gco_A Protein STI-1; structur 99.2 8.7E-10 3E-14 70.5 12.3 97 56-154 14-110 (126)
127 1na0_A Designed protein CTPR3; 99.2 2.2E-09 7.4E-14 68.1 14.0 112 20-134 9-120 (125)
128 2lni_A Stress-induced-phosphop 99.2 1.8E-09 6E-14 69.5 13.6 116 18-136 14-129 (133)
129 3gyz_A Chaperone protein IPGC; 99.2 3.9E-10 1.3E-14 74.4 10.3 104 124-231 35-138 (151)
130 2c2l_A CHIP, carboxy terminus 99.2 6E-10 2.1E-14 81.7 12.4 195 53-258 2-198 (281)
131 1a17_A Serine/threonine protei 99.2 4.6E-09 1.6E-13 70.3 15.9 94 93-188 16-109 (166)
132 2vyi_A SGTA protein; chaperone 99.2 1.4E-09 4.7E-14 69.6 12.6 118 19-139 11-128 (131)
133 4f3v_A ESX-1 secretion system 99.2 6.9E-10 2.4E-14 80.1 11.9 187 67-259 18-237 (282)
134 3gw4_A Uncharacterized protein 99.1 1.4E-09 4.9E-14 75.4 13.1 158 66-224 3-176 (203)
135 2e2e_A Formate-dependent nitri 99.1 1.2E-09 4.1E-14 74.3 12.2 121 101-224 21-144 (177)
136 2lni_A Stress-induced-phosphop 99.1 3.3E-09 1.1E-13 68.1 13.7 118 52-172 13-130 (133)
137 1p5q_A FKBP52, FK506-binding p 99.1 2.6E-10 9E-15 85.8 9.5 87 91-179 197-283 (336)
138 2qfc_A PLCR protein; TPR, HTH, 99.1 9E-09 3.1E-13 75.9 17.3 167 22-188 77-265 (293)
139 3gyz_A Chaperone protein IPGC; 99.1 1.3E-09 4.4E-14 71.9 11.4 98 55-154 36-133 (151)
140 1na0_A Designed protein CTPR3; 99.1 5E-09 1.7E-13 66.4 14.0 98 55-154 9-106 (125)
141 2vyi_A SGTA protein; chaperone 99.1 3E-09 1E-13 68.0 12.7 119 54-175 11-129 (131)
142 3gw4_A Uncharacterized protein 99.1 2E-09 7E-14 74.6 12.6 158 30-188 2-175 (203)
143 2vgx_A Chaperone SYCD; alterna 99.1 1.3E-09 4.5E-14 71.8 10.2 98 19-118 20-117 (148)
144 2vgx_A Chaperone SYCD; alterna 99.1 2E-09 6.8E-14 70.9 10.7 109 113-224 10-118 (148)
145 2e2e_A Formate-dependent nitri 99.1 1.7E-09 5.7E-14 73.5 10.4 119 68-189 23-144 (177)
146 2xcb_A PCRH, regulatory protei 99.1 5.2E-09 1.8E-13 68.4 12.0 100 19-120 17-116 (142)
147 1p5q_A FKBP52, FK506-binding p 99.1 7.6E-09 2.6E-13 77.8 14.4 96 125-222 196-292 (336)
148 2fbn_A 70 kDa peptidylprolyl i 99.1 4.5E-10 1.5E-14 77.9 7.2 174 26-222 10-184 (198)
149 1elw_A TPR1-domain of HOP; HOP 99.0 2.1E-08 7.3E-13 62.7 14.0 100 19-120 3-102 (118)
150 2xcb_A PCRH, regulatory protei 99.0 2.6E-09 8.7E-14 69.9 9.5 99 54-154 17-115 (142)
151 3dss_A Geranylgeranyl transfer 99.0 9.9E-07 3.4E-11 65.5 24.0 215 2-224 47-304 (331)
152 3dss_A Geranylgeranyl transfer 99.0 9.8E-07 3.3E-11 65.5 23.6 231 20-258 26-303 (331)
153 3upv_A Heat shock protein STI1 99.0 2.1E-08 7.1E-13 64.0 13.1 99 19-119 3-101 (126)
154 2fbn_A 70 kDa peptidylprolyl i 99.0 1.3E-09 4.5E-14 75.5 7.9 130 125-257 38-184 (198)
155 1elw_A TPR1-domain of HOP; HOP 99.0 5.7E-08 1.9E-12 60.7 14.3 97 56-154 5-101 (118)
156 3upv_A Heat shock protein STI1 99.0 4.2E-08 1.4E-12 62.5 13.7 97 126-224 5-101 (126)
157 3q49_B STIP1 homology and U bo 99.0 2.2E-08 7.7E-13 64.7 12.2 101 17-119 6-106 (137)
158 3sz7_A HSC70 cochaperone (SGT) 99.0 2.6E-08 8.9E-13 66.7 12.8 101 18-120 9-109 (164)
159 4gcn_A Protein STI-1; structur 98.9 3.2E-08 1.1E-12 63.2 12.2 107 126-235 9-121 (127)
160 4gcn_A Protein STI-1; structur 98.9 2.8E-08 9.5E-13 63.6 11.8 98 20-118 8-111 (127)
161 2kck_A TPR repeat; tetratricop 98.9 5.3E-08 1.8E-12 60.3 12.9 95 92-188 8-105 (112)
162 2dba_A Smooth muscle cell asso 98.9 9.3E-08 3.2E-12 62.5 14.2 100 19-120 27-129 (148)
163 4b4t_Q 26S proteasome regulato 98.9 3.5E-07 1.2E-11 71.1 19.0 198 27-224 11-245 (434)
164 1elr_A TPR2A-domain of HOP; HO 98.9 4E-08 1.4E-12 62.7 11.2 112 126-240 5-122 (131)
165 3q49_B STIP1 homology and U bo 98.9 5.3E-08 1.8E-12 62.9 11.9 99 53-153 7-105 (137)
166 2kck_A TPR repeat; tetratricop 98.9 4.7E-08 1.6E-12 60.5 11.2 99 20-119 6-106 (112)
167 1elr_A TPR2A-domain of HOP; HO 98.9 2.9E-08 1E-12 63.4 10.4 99 20-119 4-108 (131)
168 4b4t_Q 26S proteasome regulato 98.9 2.5E-07 8.6E-12 71.9 17.5 188 2-189 21-245 (434)
169 3sz7_A HSC70 cochaperone (SGT) 98.9 1.5E-07 5E-12 63.0 14.0 98 90-189 11-108 (164)
170 2dba_A Smooth muscle cell asso 98.9 2.1E-07 7.1E-12 60.8 14.2 98 54-154 27-128 (148)
171 2uy1_A Cleavage stimulation fa 98.8 4.3E-06 1.5E-10 66.2 23.6 205 36-258 195-412 (493)
172 1hxi_A PEX5, peroxisome target 98.8 7E-08 2.4E-12 61.1 10.7 95 23-119 20-114 (121)
173 1wao_1 Serine/threonine protei 98.8 5.2E-09 1.8E-13 82.5 5.4 125 22-149 8-134 (477)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 1.7E-07 5.7E-12 73.6 13.6 87 91-179 318-404 (457)
175 1hxi_A PEX5, peroxisome target 98.8 1.2E-07 4.1E-12 60.0 10.3 89 132-222 24-112 (121)
176 2xev_A YBGF; tetratricopeptide 98.8 6.4E-07 2.2E-11 57.0 13.7 94 25-119 7-105 (129)
177 1wao_1 Serine/threonine protei 98.8 1.9E-08 6.6E-13 79.3 7.6 124 93-219 9-134 (477)
178 1ihg_A Cyclophilin 40; ppiase 98.8 1.9E-07 6.3E-12 71.2 12.7 123 20-144 223-360 (370)
179 3ro3_A PINS homolog, G-protein 98.8 1.1E-07 3.9E-12 63.0 10.3 131 127-257 11-156 (164)
180 2xev_A YBGF; tetratricopeptide 98.7 8.8E-07 3E-11 56.4 14.1 93 60-154 7-105 (129)
181 3rkv_A Putative peptidylprolyl 98.7 3.8E-07 1.3E-11 60.8 12.1 101 19-120 10-127 (162)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 2.5E-07 8.4E-12 72.6 12.6 145 55-222 268-413 (457)
183 1dce_A Protein (RAB geranylger 98.7 1.1E-06 3.9E-11 70.6 16.3 172 2-178 46-244 (567)
184 3ro3_A PINS homolog, G-protein 98.7 3E-07 1E-11 60.8 10.8 97 127-223 51-157 (164)
185 1dce_A Protein (RAB geranylger 98.7 3.9E-06 1.3E-10 67.5 18.5 172 34-210 43-241 (567)
186 3rkv_A Putative peptidylprolyl 98.7 8.5E-07 2.9E-11 59.1 12.6 64 160-224 63-126 (162)
187 1ihg_A Cyclophilin 40; ppiase 98.7 7.8E-07 2.7E-11 67.7 13.8 123 127-251 225-362 (370)
188 3k9i_A BH0479 protein; putativ 98.6 8E-08 2.7E-12 60.4 6.5 85 33-118 3-89 (117)
189 3k9i_A BH0479 protein; putativ 98.6 9E-08 3.1E-12 60.2 6.6 84 69-153 4-89 (117)
190 2uy1_A Cleavage stimulation fa 98.6 2E-05 6.9E-10 62.4 20.7 202 4-223 198-412 (493)
191 2if4_A ATFKBP42; FKBP-like, al 98.6 2.9E-07 9.9E-12 69.3 9.8 149 20-189 179-328 (338)
192 1klx_A Cysteine rich protein B 98.6 5.7E-06 2E-10 53.5 14.0 113 103-226 8-128 (138)
193 2if4_A ATFKBP42; FKBP-like, al 98.6 3.7E-07 1.3E-11 68.7 9.2 148 56-224 180-328 (338)
194 2kat_A Uncharacterized protein 98.6 8.7E-07 3E-11 55.3 9.5 82 1-84 1-82 (115)
195 1klx_A Cysteine rich protein B 98.5 4.6E-06 1.6E-10 53.9 12.6 111 69-190 9-127 (138)
196 2hr2_A Hypothetical protein; a 98.5 2.2E-06 7.5E-11 56.2 10.6 98 20-118 11-130 (159)
197 3n71_A Histone lysine methyltr 98.5 1.5E-06 5E-11 68.4 10.7 125 134-258 318-463 (490)
198 2l6j_A TPR repeat-containing p 98.4 2.3E-07 7.9E-12 57.4 4.8 67 18-85 2-68 (111)
199 2hr2_A Hypothetical protein; a 98.4 5.2E-06 1.8E-10 54.4 10.9 108 56-188 12-130 (159)
200 3n71_A Histone lysine methyltr 98.4 3.2E-06 1.1E-10 66.6 11.5 125 100-224 319-464 (490)
201 2l6j_A TPR repeat-containing p 98.4 5.8E-07 2E-11 55.5 5.9 88 161-251 5-99 (111)
202 1na3_A Designed protein CTPR2; 98.4 5E-06 1.7E-10 49.1 9.7 80 19-100 8-87 (91)
203 2kat_A Uncharacterized protein 98.3 5.1E-06 1.7E-10 51.7 8.4 76 110-187 5-80 (115)
204 1zu2_A Mitochondrial import re 98.3 4.4E-06 1.5E-10 54.7 7.8 72 100-173 12-93 (158)
205 1zu2_A Mitochondrial import re 98.3 4.8E-06 1.6E-10 54.5 7.8 99 33-135 15-134 (158)
206 1na3_A Designed protein CTPR2; 98.3 1.3E-05 4.5E-10 47.2 9.3 79 55-135 9-87 (91)
207 3ma5_A Tetratricopeptide repea 98.2 1.7E-05 5.7E-10 48.1 8.6 64 19-83 6-69 (100)
208 3ma5_A Tetratricopeptide repea 98.1 2.4E-05 8.3E-10 47.3 8.0 58 127-185 9-66 (100)
209 3ly7_A Transcriptional activat 98.0 0.00043 1.5E-08 52.0 15.0 74 157-234 274-347 (372)
210 3ly7_A Transcriptional activat 97.9 0.0006 2E-08 51.2 13.7 74 122-199 274-347 (372)
211 2kc7_A BFR218_protein; tetratr 97.9 5.3E-05 1.8E-09 45.5 6.4 59 26-85 6-65 (99)
212 3bee_A Putative YFRE protein; 97.7 0.00056 1.9E-08 40.6 8.9 68 17-85 3-73 (93)
213 2kc7_A BFR218_protein; tetratr 97.7 0.00022 7.5E-09 42.7 7.3 25 128-152 38-62 (99)
214 3qww_A SET and MYND domain-con 97.6 0.00028 9.6E-09 54.7 8.7 87 137-223 310-410 (433)
215 3qww_A SET and MYND domain-con 97.6 0.00038 1.3E-08 54.0 9.2 87 102-188 310-410 (433)
216 3qwp_A SET and MYND domain-con 97.6 0.00046 1.6E-08 53.5 9.4 93 131-223 293-399 (429)
217 3qwp_A SET and MYND domain-con 97.5 0.0007 2.4E-08 52.6 9.9 92 167-258 294-399 (429)
218 3mkq_A Coatomer beta'-subunit; 97.5 0.0046 1.6E-07 52.1 15.7 157 28-223 607-764 (814)
219 3mkq_A Coatomer beta'-subunit; 97.5 0.0059 2E-07 51.4 16.2 129 24-185 633-761 (814)
220 3u64_A Protein TP_0956; tetrat 97.4 0.0086 3E-07 43.3 13.5 92 141-232 179-279 (301)
221 3u64_A Protein TP_0956; tetrat 97.4 0.017 5.7E-07 41.9 14.7 95 105-199 178-281 (301)
222 3bee_A Putative YFRE protein; 97.4 0.0029 1E-07 37.4 9.3 68 52-120 3-73 (93)
223 1pc2_A Mitochondria fission pr 97.4 0.0029 9.8E-08 41.0 9.7 83 105-189 13-100 (152)
224 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0026 9E-08 38.5 9.3 67 18-84 3-75 (104)
225 1pc2_A Mitochondria fission pr 97.3 0.0045 1.5E-07 40.1 9.8 79 4-84 17-100 (152)
226 3mkq_B Coatomer subunit alpha; 97.3 0.017 5.8E-07 38.5 12.8 104 27-151 12-115 (177)
227 2v5f_A Prolyl 4-hydroxylase su 97.2 0.009 3.1E-07 36.1 10.3 63 126-188 6-74 (104)
228 4h7y_A Dual specificity protei 97.0 0.013 4.3E-07 37.7 9.5 53 139-192 74-126 (161)
229 3mkq_B Coatomer subunit alpha; 97.0 0.035 1.2E-06 36.9 13.8 130 97-256 12-141 (177)
230 1wy6_A Hypothetical protein ST 96.9 0.03 1E-06 35.4 15.1 65 195-260 91-155 (172)
231 4gns_B Protein CSD3, chitin bi 96.9 0.029 1E-06 46.6 13.0 127 95-222 253-398 (754)
232 4h7y_A Dual specificity protei 96.7 0.054 1.8E-06 34.9 12.0 52 103-155 73-124 (161)
233 4gns_B Protein CSD3, chitin bi 96.5 0.041 1.4E-06 45.7 11.5 128 128-256 251-397 (754)
234 1nzn_A CGI-135 protein, fissio 96.5 0.07 2.4E-06 33.3 10.1 65 158-223 33-102 (126)
235 1nzn_A CGI-135 protein, fissio 96.5 0.053 1.8E-06 33.8 9.2 85 104-189 15-103 (126)
236 2ff4_A Probable regulatory pro 96.0 0.039 1.3E-06 42.2 8.7 74 57-131 173-251 (388)
237 1wy6_A Hypothetical protein ST 96.0 0.15 5.1E-06 32.3 16.0 137 33-191 20-156 (172)
238 4ady_A RPN2, 26S proteasome re 96.0 0.56 1.9E-05 40.1 15.5 87 135-223 500-588 (963)
239 4fhn_B Nucleoporin NUP120; pro 95.7 0.92 3.2E-05 40.1 16.5 187 60-253 817-1043(1139)
240 3lvg_A Clathrin heavy chain 1; 95.6 1.2E-06 4.1E-11 67.3 -17.3 182 54-255 53-254 (624)
241 2ff4_A Probable regulatory pro 95.3 0.14 4.6E-06 39.3 9.2 53 133-186 179-231 (388)
242 4b4t_P 26S proteasome regulato 95.3 0.8 2.7E-05 35.8 17.9 93 129-221 141-244 (445)
243 3lvg_A Clathrin heavy chain 1; 95.2 1.1E-05 3.9E-10 62.1 -13.1 117 19-150 53-169 (624)
244 4fhn_B Nucleoporin NUP120; pro 95.2 1.5 5.2E-05 38.8 17.3 148 96-250 818-991 (1139)
245 4b4t_P 26S proteasome regulato 94.7 1.2 4E-05 34.8 20.4 245 3-252 34-317 (445)
246 1v54_E Cytochrome C oxidase po 93.5 0.66 2.3E-05 27.5 9.4 49 140-188 25-73 (109)
247 1v54_E Cytochrome C oxidase po 93.0 0.81 2.8E-05 27.2 9.8 62 35-97 25-86 (109)
248 3txn_A 26S proteasome regulato 93.0 2.4 8.1E-05 32.5 14.6 27 56-82 20-46 (394)
249 3ffl_A Anaphase-promoting comp 92.6 1.4 4.9E-05 28.9 10.3 57 25-81 25-89 (167)
250 4b4t_R RPN7, 26S proteasome re 92.3 1.9 6.6E-05 33.4 10.5 97 56-152 132-235 (429)
251 4b4t_R RPN7, 26S proteasome re 92.2 2.4 8.1E-05 33.0 10.9 98 21-118 132-236 (429)
252 2y69_E Cytochrome C oxidase su 92.1 1.4 4.8E-05 27.8 9.4 45 179-223 72-116 (152)
253 3txn_A 26S proteasome regulato 91.8 3.5 0.00012 31.6 20.9 167 20-187 19-208 (394)
254 3o48_A Mitochondria fission 1 91.5 1.7 5.7E-05 27.4 10.0 66 18-83 38-106 (134)
255 3esl_A Checkpoint serine/threo 91.2 2.2 7.5E-05 29.1 8.4 55 69-123 93-148 (202)
256 2y69_E Cytochrome C oxidase su 90.6 2.1 7.2E-05 27.0 9.9 64 71-135 69-132 (152)
257 2uwj_G Type III export protein 90.5 1.7 5.8E-05 25.7 7.1 79 34-120 20-98 (115)
258 1zbp_A Hypothetical protein VP 90.4 1.9 6.5E-05 30.9 7.8 116 98-224 5-129 (273)
259 2p58_C Putative type III secre 90.2 1.8 6.2E-05 25.6 8.2 86 34-128 21-106 (116)
260 1zbp_A Hypothetical protein VP 89.7 3.7 0.00013 29.4 8.9 55 29-84 6-60 (273)
261 2uwj_G Type III export protein 89.2 2.3 7.8E-05 25.2 7.2 84 2-94 23-106 (115)
262 2p58_C Putative type III secre 88.9 2.4 8.3E-05 25.1 8.0 83 2-93 24-106 (116)
263 3lpz_A GET4 (YOR164C homolog); 88.3 6.4 0.00022 29.3 19.5 26 158-183 134-159 (336)
264 3o48_A Mitochondria fission 1 87.9 3.6 0.00012 25.9 11.5 67 157-223 37-106 (134)
265 2wpv_A GET4, UPF0363 protein Y 87.9 6.6 0.00023 29.0 19.1 113 57-184 35-158 (312)
266 3ffl_A Anaphase-promoting comp 87.6 4.4 0.00015 26.7 10.8 22 165-186 127-148 (167)
267 1wdy_A 2-5A-dependent ribonucl 87.4 6.1 0.00021 28.0 11.0 22 173-194 192-213 (285)
268 3esl_A Checkpoint serine/threo 87.3 5.3 0.00018 27.2 10.4 53 141-193 95-148 (202)
269 2wvi_A Mitotic checkpoint seri 86.9 3.7 0.00013 26.9 6.9 72 16-90 59-131 (164)
270 1y8m_A FIS1; mitochondria, unk 86.7 4.5 0.00015 25.8 11.4 46 38-83 60-105 (144)
271 4a1g_A Mitotic checkpoint seri 86.3 5 0.00017 26.0 8.2 70 52-124 65-135 (152)
272 4ady_A RPN2, 26S proteasome re 86.3 16 0.00054 31.7 20.0 153 65-223 500-657 (963)
273 3kea_A K1L; tropism, ANK repea 85.4 7.7 0.00026 27.9 9.0 143 27-185 35-183 (285)
274 1wdy_A 2-5A-dependent ribonucl 84.9 8.3 0.00029 27.3 9.0 19 26-44 8-26 (285)
275 1y8m_A FIS1; mitochondria, unk 83.8 6.5 0.00022 25.1 12.8 66 123-188 37-105 (144)
276 1qsa_A Protein (soluble lytic 83.2 18 0.00061 29.7 21.5 115 140-258 229-347 (618)
277 3eiq_C Programmed cell death p 82.9 13 0.00045 28.0 14.2 95 162-257 219-319 (358)
278 4aez_C MAD3, mitotic spindle c 82.1 5.6 0.00019 27.6 6.4 71 16-89 113-184 (223)
279 3kae_A CDC27, possible protein 80.6 10 0.00035 25.2 7.5 23 93-115 117-139 (242)
280 3bu8_A Telomeric repeat-bindin 80.3 12 0.00041 25.8 7.4 18 30-47 124-141 (235)
281 3eu9_A Huntingtin-interacting 80.2 8.2 0.00028 26.5 7.2 203 29-256 15-233 (240)
282 3kea_A K1L; tropism, ANK repea 78.8 16 0.00054 26.3 8.6 132 6-150 45-183 (285)
283 3hra_A Ankyrin repeat family p 78.6 12 0.00041 24.8 8.5 14 31-44 13-26 (201)
284 2nsz_A Programmed cell death p 78.3 8.5 0.00029 24.0 6.0 24 59-82 11-34 (129)
285 3jxi_A Vanilloid receptor-rela 77.6 4 0.00014 28.7 5.0 55 27-81 9-72 (260)
286 4a1g_A Mitotic checkpoint seri 77.6 12 0.00041 24.2 9.9 52 179-230 84-136 (152)
287 2wpv_A GET4, UPF0363 protein Y 76.7 20 0.00069 26.4 16.9 113 21-148 34-157 (312)
288 2d2s_A Exocyst complex compone 76.7 17 0.00058 25.5 9.1 87 62-151 25-117 (235)
289 3jxi_A Vanilloid receptor-rela 74.6 7.4 0.00025 27.3 5.7 55 62-116 9-72 (260)
290 2ion_A PDCD4, programmed cell 74.5 12 0.0004 24.3 6.0 23 59-81 13-35 (152)
291 3kae_A CDC27, possible protein 73.4 18 0.0006 24.2 6.5 97 32-152 45-141 (242)
292 2xig_A Ferric uptake regulatio 72.8 16 0.00054 23.5 6.3 59 10-69 17-75 (150)
293 3eiq_C Programmed cell death p 72.4 29 0.00098 26.2 11.0 62 197-259 219-282 (358)
294 2wvi_A Mitotic checkpoint seri 72.3 18 0.00061 23.8 9.9 53 179-231 79-132 (164)
295 4b4t_S RPN3, 26S proteasome re 71.8 29 0.00098 27.8 8.5 66 19-84 230-299 (523)
296 2fe3_A Peroxide operon regulat 70.4 18 0.00061 23.0 7.0 61 9-70 11-71 (145)
297 4aez_C MAD3, mitotic spindle c 70.2 24 0.00084 24.5 8.1 53 177-229 131-184 (223)
298 2w57_A Ferric uptake regulatio 70.2 17 0.0006 23.3 6.1 63 8-71 5-68 (150)
299 1mzb_A Ferric uptake regulatio 70.1 17 0.00057 22.8 5.9 60 10-70 8-68 (136)
300 1k1a_A B-cell lymphoma 3-encod 69.8 24 0.00081 24.2 11.3 150 27-185 13-172 (241)
301 3eyy_A Putative iron uptake re 69.1 12 0.00041 23.9 5.1 60 9-70 8-67 (145)
302 3lpz_A GET4 (YOR164C homolog); 69.0 34 0.0011 25.6 24.3 133 21-172 36-179 (336)
303 2d2s_A Exocyst complex compone 68.8 27 0.00093 24.5 9.0 91 130-223 23-119 (235)
304 2zu6_B Programmed cell death p 68.6 32 0.0011 25.3 12.5 226 23-257 6-268 (307)
305 2ion_A PDCD4, programmed cell 68.6 21 0.00071 23.1 8.2 64 127-191 11-76 (152)
306 1bpo_A Protein (clathrin); cla 67.6 43 0.0015 26.4 9.8 111 34-149 343-453 (494)
307 2f6m_A Suppressor protein STP2 66.8 13 0.00044 20.0 4.0 45 22-67 4-48 (65)
308 4ets_A Ferric uptake regulatio 66.0 19 0.00067 23.4 5.7 58 47-105 25-84 (162)
309 3eu9_A Huntingtin-interacting 65.6 29 0.00099 23.6 9.3 197 5-221 22-233 (240)
310 2nsz_A Programmed cell death p 65.0 22 0.00076 22.1 9.5 64 127-191 9-74 (129)
311 2keb_A DNA polymerase subunit 63.8 20 0.00068 21.1 6.4 31 4-34 28-58 (101)
312 4b4t_S RPN3, 26S proteasome re 63.8 55 0.0019 26.2 11.5 66 124-189 230-299 (523)
313 3hra_A Ankyrin repeat family p 63.6 29 0.00099 22.9 8.6 173 64-248 11-193 (201)
314 3pvs_A Replication-associated 63.3 52 0.0018 25.7 13.6 54 102-155 267-325 (447)
315 3ljn_A Hypothetical protein; a 62.8 41 0.0014 25.0 7.9 89 19-116 17-107 (364)
316 3eyy_A Putative iron uptake re 62.7 27 0.00092 22.2 6.0 58 186-245 10-67 (145)
317 3bu8_A Telomeric repeat-bindin 61.7 37 0.0013 23.5 7.8 48 141-189 88-143 (235)
318 2fu4_A Ferric uptake regulatio 61.0 19 0.00065 20.0 6.1 59 10-69 7-66 (83)
319 2xig_A Ferric uptake regulatio 60.0 31 0.0011 22.1 7.4 59 186-245 18-76 (150)
320 2fe3_A Peroxide operon regulat 59.3 31 0.0011 21.9 7.2 59 186-245 13-71 (145)
321 3mwm_A ZUR, putative metal upt 58.2 23 0.00077 22.4 4.9 43 202-244 20-62 (139)
322 2o03_A Probable zinc uptake re 58.0 26 0.00088 21.8 5.1 37 208-244 23-59 (131)
323 1mzb_A Ferric uptake regulatio 57.4 33 0.0011 21.5 6.5 35 210-244 33-67 (136)
324 2w57_A Ferric uptake regulatio 57.2 35 0.0012 21.8 6.4 36 210-245 32-67 (150)
325 2r9g_A AAA ATPase, central reg 57.2 43 0.0015 22.8 9.2 54 68-122 27-85 (204)
326 2b7e_A PRE-mRNA processing pro 57.0 17 0.00057 19.1 3.3 29 107-135 3-31 (59)
327 4gq2_M Nucleoporin NUP120; bet 57.0 1E+02 0.0034 27.0 12.4 108 131-244 816-950 (950)
328 3bge_A Predicted ATPase; struc 56.8 43 0.0015 22.7 8.5 53 68-120 20-77 (201)
329 3b7b_A Euchromatic histone-lys 56.1 45 0.0015 22.7 7.2 207 27-259 15-236 (237)
330 4ets_A Ferric uptake regulatio 55.4 28 0.00096 22.7 5.1 60 81-141 24-85 (162)
331 2ijq_A Hypothetical protein; s 54.0 43 0.0015 21.9 7.7 49 174-222 46-102 (161)
332 2yru_A Steroid receptor RNA ac 53.9 36 0.0012 20.9 5.1 43 42-84 48-90 (118)
333 1bd8_A P19INK4D CDK4/6 inhibit 53.8 38 0.0013 21.2 5.6 11 68-78 12-22 (156)
334 1bd8_A P19INK4D CDK4/6 inhibit 53.2 39 0.0013 21.1 5.8 78 26-110 5-85 (156)
335 3ygs_P Procaspase 9; apoptosis 52.8 22 0.00076 20.8 3.9 64 6-75 25-88 (97)
336 2keb_A DNA polymerase subunit 52.5 33 0.0011 20.2 5.8 57 178-236 27-88 (101)
337 3f3f_C Nucleoporin NUP85; stru 52.5 53 0.0018 26.6 6.9 54 195-250 516-569 (570)
338 3ljn_A Hypothetical protein; a 52.5 68 0.0023 23.7 10.6 25 63-87 89-113 (364)
339 1ug3_A EIF4GI, eukaryotic prot 52.1 71 0.0024 23.8 7.9 63 22-86 13-77 (339)
340 3ctd_A Putative ATPase, AAA fa 50.8 58 0.002 22.4 8.3 66 57-122 34-107 (213)
341 2qfz_A TBC1 domain family memb 50.4 51 0.0017 24.6 6.4 77 41-117 230-313 (345)
342 3qil_A Clathrin heavy chain 1; 49.8 19 0.00064 22.2 3.1 47 26-75 38-84 (125)
343 1n11_A Ankyrin; clathrin, BAND 48.5 88 0.003 23.9 8.3 203 5-219 27-233 (437)
344 3ubw_A 14-3-3E, 14-3-3 protein 47.9 74 0.0025 22.8 10.4 62 56-117 32-94 (261)
345 1k1a_A B-cell lymphoma 3-encod 47.8 63 0.0021 21.9 11.3 178 62-252 13-202 (241)
346 2o03_A Probable zinc uptake re 46.9 44 0.0015 20.7 4.8 47 130-176 15-61 (131)
347 2rg8_A Programmed cell death p 45.0 53 0.0018 21.5 5.1 24 59-82 14-37 (165)
348 3mwm_A ZUR, putative metal upt 44.9 40 0.0014 21.2 4.4 47 130-176 18-64 (139)
349 2pnn_A Transient receptor pote 44.2 45 0.0015 23.5 5.2 55 27-81 17-80 (273)
350 2p22_A Suppressor protein STP2 43.1 39 0.0013 22.4 4.2 54 52-106 108-161 (174)
351 3ltm_A Alpha-REP4; protein eng 43.1 72 0.0025 21.3 18.1 172 53-244 31-202 (211)
352 2pnn_A Transient receptor pote 42.1 79 0.0027 22.2 6.2 89 61-150 16-123 (273)
353 1qsa_A Protein (soluble lytic 41.9 1.5E+02 0.005 24.5 26.5 176 70-252 229-435 (618)
354 2ijq_A Hypothetical protein; s 41.9 71 0.0024 20.9 8.5 52 32-83 44-103 (161)
355 3pvs_A Replication-associated 41.9 1.2E+02 0.0042 23.6 15.3 55 137-191 267-326 (447)
356 3qil_A Clathrin heavy chain 1; 41.1 29 0.001 21.4 3.1 52 163-217 35-86 (125)
357 4gq2_M Nucleoporin NUP120; bet 41.0 1.9E+02 0.0063 25.4 12.4 107 96-208 816-949 (950)
358 1ya0_A SMG-7 transcript varian 39.8 1.4E+02 0.0049 23.8 9.3 74 27-102 159-232 (497)
359 3t5v_B Nuclear mRNA export pro 39.1 1.1E+02 0.0038 24.0 6.8 60 162-221 178-246 (455)
360 1ug3_A EIF4GI, eukaryotic prot 38.7 1.2E+02 0.0041 22.6 8.0 25 93-117 14-38 (339)
361 3f3f_C Nucleoporin NUP85; stru 37.7 1.7E+02 0.0057 23.9 8.3 55 159-215 515-569 (570)
362 2etb_A Transient receptor pote 37.3 1E+02 0.0034 21.3 7.7 15 240-254 228-242 (256)
363 1bpo_A Protein (clathrin); cla 37.1 1.6E+02 0.0053 23.4 10.3 141 103-256 342-482 (494)
364 2p22_A Suppressor protein STP2 36.6 79 0.0027 21.0 4.8 49 90-139 111-159 (174)
365 2qfz_A TBC1 domain family memb 34.5 78 0.0027 23.6 5.3 45 182-226 231-275 (345)
366 1zl8_A LIN-7; heterodimer, alp 34.0 48 0.0016 16.6 4.4 17 175-191 8-24 (53)
367 2qq8_A TBC1 domain family memb 33.9 1E+02 0.0034 22.9 5.7 58 25-86 202-259 (334)
368 2dzn_A Probable 26S proteasome 32.5 58 0.002 21.9 4.1 82 27-113 6-92 (228)
369 1ixm_A SPO0B, protein (sporula 32.4 83 0.0028 21.2 4.6 24 60-83 37-60 (192)
370 2crb_A Nuclear receptor bindin 32.0 78 0.0027 18.4 4.0 26 196-221 16-41 (97)
371 2ko4_A Mediator of RNA polymer 32.0 57 0.002 18.3 3.0 14 192-205 33-46 (81)
372 3l6a_A Eukaryotic translation 31.3 1.7E+02 0.0058 22.1 10.2 131 127-258 14-150 (364)
373 3ltm_A Alpha-REP4; protein eng 31.2 1.2E+02 0.004 20.2 17.0 151 89-256 32-182 (211)
374 2yru_A Steroid receptor RNA ac 30.1 97 0.0033 19.0 5.8 43 77-119 48-90 (118)
375 2dzn_A Probable 26S proteasome 30.1 1E+02 0.0034 20.7 5.0 175 62-253 6-194 (228)
376 3t5v_B Nuclear mRNA export pro 30.0 1.4E+02 0.0047 23.5 6.0 62 197-258 178-248 (455)
377 2etb_A Transient receptor pote 29.9 1.4E+02 0.0047 20.6 5.9 56 27-83 6-71 (256)
378 2qq8_A TBC1 domain family memb 29.5 59 0.002 24.2 3.8 35 155-189 223-257 (334)
379 1ixm_A SPO0B, protein (sporula 29.0 1.3E+02 0.0046 20.2 5.3 21 26-46 38-58 (192)
380 3ph0_C ASCG; type III secretio 28.9 66 0.0023 16.7 4.4 41 34-75 20-60 (61)
381 3twr_A Tankyrase-2; ankyrin re 28.8 1.1E+02 0.0038 19.2 7.3 16 29-44 14-29 (165)
382 1oai_A Nuclear RNA export fact 28.5 65 0.0022 16.8 2.8 17 69-85 34-50 (59)
383 2fv2_A RCD1 required for cell 27.9 98 0.0034 22.2 4.4 49 174-222 187-236 (268)
384 4fke_A Aminopeptidase N; zinc 27.8 3.1E+02 0.01 24.0 17.9 87 62-153 693-786 (909)
385 2qx5_A Nucleoporin NIC96; mRNA 27.6 2.7E+02 0.0092 23.3 10.5 41 60-101 157-197 (661)
386 1jog_A Hypothetical protein HI 26.7 1.3E+02 0.0043 19.2 5.1 27 195-222 77-103 (146)
387 2rg8_A Programmed cell death p 26.6 1.4E+02 0.0047 19.5 6.3 59 127-187 12-72 (165)
388 4f52_E Glomulin; cullin-ring E 26.5 1.9E+02 0.0066 23.7 6.5 28 18-45 26-53 (596)
389 3aji_A 26S proteasome non-ATPa 26.4 1.5E+02 0.0051 19.9 10.9 179 27-229 10-199 (231)
390 2cos_A Serine/threonine protei 26.0 74 0.0025 16.3 3.7 11 36-46 38-48 (54)
391 3e3v_A Regulatory protein RECX 25.8 1.5E+02 0.005 19.6 9.7 51 106-157 49-99 (177)
392 1dvk_A PRP18; PRE-mRNA splicin 25.3 1.5E+02 0.0052 19.6 5.5 45 38-82 64-109 (173)
393 2f8y_A Notch homolog 1, transl 24.7 1.6E+02 0.0054 19.6 6.8 142 26-185 28-180 (223)
394 2e2a_A Protein (enzyme IIA); h 24.7 1.2E+02 0.004 18.1 4.5 19 29-47 29-47 (105)
395 2rfa_A Transient receptor pote 24.4 1.6E+02 0.0056 19.7 9.6 25 202-226 158-182 (232)
396 2rpa_A Katanin P60 ATPase-cont 24.2 80 0.0028 17.6 2.8 25 199-223 16-40 (78)
397 3bqo_A Telomeric repeat-bindin 24.1 1.8E+02 0.006 19.9 10.0 22 167-188 124-145 (211)
398 1ya0_A SMG-7 transcript varian 22.8 2.9E+02 0.01 22.0 9.8 66 103-170 165-230 (497)
399 4fke_A Aminopeptidase N; zinc 22.1 4E+02 0.014 23.3 18.7 89 96-189 692-787 (909)
400 3t8k_A Uncharacterized protein 22.0 1.7E+02 0.006 19.1 12.1 157 30-191 13-182 (186)
401 3b5o_A CADD-like protein of un 22.0 1.9E+02 0.0066 20.4 4.9 24 197-220 155-178 (244)
402 3lxu_X Tripeptidyl-peptidase 2 21.3 5E+02 0.017 24.1 9.3 79 94-174 1238-1331(1354)
403 1wcr_A PTS system, N, N'-diace 21.3 1.4E+02 0.0048 17.7 4.5 20 28-47 26-45 (103)
404 3d9h_A CDNA FLJ77766, highly s 21.1 2.3E+02 0.0077 20.1 7.8 20 24-43 16-35 (285)
405 1wty_A Hypothetical protein TT 21.0 1.5E+02 0.0051 17.9 7.5 111 140-258 3-117 (119)
406 3m6y_A 4-hydroxy-2-oxoglutarat 20.1 2.4E+02 0.0083 20.0 6.7 83 36-118 170-269 (275)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.8e-38 Score=245.28 Aligned_cols=206 Identities=13% Similarity=0.197 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCC---------hH
Q 044047 3 EASRLLDLMIQRGVRPNAF-VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKD---------VE 72 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 72 (260)
.+..+.+.+.+.+..+++. .++.+|++|++.|++++|.++|++|.+.|++||..+|+.+|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3456667777777665543 6888999999999999999999999999999999999999999987664 68
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 73 ESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 73 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
.|.++|++|.+.|+.||..||++++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhc
Q 044047 153 VLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCND 208 (260)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (260)
..|+.||..+|+.++.+|++.|++++|.+++++|.+.|..|+..||+.++..++..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999988763
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.6e-38 Score=245.62 Aligned_cols=207 Identities=14% Similarity=0.183 Sum_probs=182.4
Q ss_pred HHHHHHHHHHhhcCCCCch-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc---------H
Q 044047 37 DRARELFVSMDINGCMHNV-VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ---------V 106 (260)
Q Consensus 37 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 106 (260)
..+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777665544 46889999999999999999999999999999999999999999987654 7
Q ss_pred HHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 044047 107 EHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSL 186 (260)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (260)
+.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 044047 187 PRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRN 243 (260)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 243 (260)
.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.4e-28 Score=197.07 Aligned_cols=250 Identities=12% Similarity=0.046 Sum_probs=168.7
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
+|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.
T Consensus 323 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 323 DVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455555554443 2244445555555555555555555555554333 4456667777777777777777777777776
Q ss_pred hcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH
Q 044047 83 SKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEA 162 (260)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (260)
+.... +..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.... +.++.+
T Consensus 401 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 477 (597)
T 2xpi_A 401 TMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLL 477 (597)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 64322 45677777777777777777777777776654 4566777777777777777777777777776654 456777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRV----GLMPN--VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTL 236 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 236 (260)
|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 556 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 777777777777777777777777654 44555 5677777777777788888887777777653 3467777777
Q ss_pred HHHHHhcCchhHHHHHHHHHhh
Q 044047 237 MLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 237 ~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
..+|.+.|++++|.++++++.+
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 7777778888888777777654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2e-28 Score=198.38 Aligned_cols=251 Identities=12% Similarity=0.041 Sum_probs=227.4
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|.++|+.+.+. ++++.+++.++..+.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++
T Consensus 289 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 289 RRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5788888888765 6899999999999999999999999999999876 668899999999999999999999999999
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHH
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIE 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (260)
.+.. +.+..++..++..|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.... +.+..
T Consensus 366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 442 (597)
T 2xpi_A 366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL 442 (597)
T ss_dssp HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH
T ss_pred HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH
Confidence 8764 3478899999999999999999999999998865 5678899999999999999999999999998775 66888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC--hhhHHH
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK----GVAPN--CVTFNT 235 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~ 235 (260)
+|+.++.+|.+.|++++|.++|+.+.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 999999999999999999999999988653 36889999999999999999999999999875 66777 789999
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhc
Q 044047 236 LMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 236 l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
++.+|.+.|++++|.++++++.+.
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999998753
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=7.2e-24 Score=163.13 Aligned_cols=249 Identities=12% Similarity=0.078 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
+|.+.|+.+.+.+ |.+...+..+...+...|++++|...|+++.+.. |.+..+|..+...+...|++++|...|+++.
T Consensus 119 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 119 GAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444432 2233344444444555555555555555554443 3344555555555555555555555555555
Q ss_pred hcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH
Q 044047 83 SKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEA 162 (260)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (260)
+.++. +...+..+...+...|++++|...+++..... |.+..++..+..++...|++++|...++++.... +.++.+
T Consensus 197 ~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 273 (388)
T 1w3b_A 197 TLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDA 273 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH
Confidence 54322 34455555555666666666666666655543 4456677777777888888888888888777654 446677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIR 242 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 242 (260)
+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+..++..+..++.+
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHH
Confidence 7888888888888888888888877753 346677888888888888888888888888775 24456777888888888
Q ss_pred cCchhHHHHHHHHHhh
Q 044047 243 NNETSKVVELLHRMDE 258 (260)
Q Consensus 243 ~~~~~~a~~~~~~m~~ 258 (260)
.|++++|.+.++++.+
T Consensus 352 ~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 8888888888887765
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=6.1e-24 Score=163.53 Aligned_cols=251 Identities=15% Similarity=0.095 Sum_probs=152.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|...++...+.. +.++..|..+...+.+.|++++|...|+++.+.. |.+..+|..+..++...|++++|.+.++++
T Consensus 50 ~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 127 (388)
T 1w3b_A 50 DRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSA 127 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666666553 4456667777777777777777777777666554 444556666666666666666666666666
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC------
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK------ 155 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 155 (260)
.+..+. +...+..+...+...|++++|...|+++.+.. |.+..++..+...+...|++++|...|+++....
T Consensus 128 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T 1w3b_A 128 LQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 654322 33344555555555666666666666655543 3344555555555555555555555555544332
Q ss_pred ---------------------------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhc
Q 044047 156 ---------------------------CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCND 208 (260)
Q Consensus 156 ---------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (260)
.+.+..++..+...+...|++++|...++++.+... .+..+|..+...+.+.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc
Confidence 033455566666666666677777776666666432 2355666666677777
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 209 GQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 209 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
|++++|...++++.+. .+.+..++..+...+...|++++|.+.++++.+
T Consensus 285 g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp SCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777776664 244566666677777777777777777766654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.2e-22 Score=159.12 Aligned_cols=182 Identities=13% Similarity=0.059 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|+++|+.+.+.. +.++..+..+..++...|++++|...|+++.+.+ +.+..++..+..++...|++++|...|+++
T Consensus 43 ~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 43 ADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677777776653 3456677777777777777777777777776665 455666777777777777777777777777
Q ss_pred HhcCCCCCc---cchHHH------------HHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHH
Q 044047 82 LSKGIRPTV---VTYNTL------------FHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAE 146 (260)
Q Consensus 82 ~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (260)
.+.... +. ..+..+ ...+...|++++|...|+++.+.. +.+...+..++.+|...|++++|..
T Consensus 121 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 121 LKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp HTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred HhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 654221 22 333333 223555566666666666655543 3444555555555555555555555
Q ss_pred HHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 147 LFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
.++.+.... +.+..++..++..|...|++++|...++.+..
T Consensus 199 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 199 DLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555554433 33445555555555555555555555555443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2e-22 Score=157.83 Aligned_cols=250 Identities=11% Similarity=0.055 Sum_probs=214.8
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch---hhHHHH------------HHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV---VTYNTL------------INGYC 66 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~ 66 (260)
++|.+.|+.+.+.+ +.+...+..+..++.+.|++++|...|+.+.+.+ +.+. ..+..+ ...+.
T Consensus 77 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 77 KAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999886 4578899999999999999999999999998875 4445 566555 44488
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHH
Q 044047 67 KTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAE 146 (260)
Q Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (260)
..|++++|+..++++.+.... +..++..+..++...|++++|...|+++.+.. +.+..++..+..+|...|++++|..
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999887433 77889999999999999999999999998775 6678899999999999999999999
Q ss_pred HHHHhhhcCCCcCHHHHHHH------------HHHHHhcCCHHHHHHHHHhhhhCCCCCc-----hhhHHHHHHHHHhcC
Q 044047 147 LFRTLRVLKCELGIEAYSCL------------IDGLCKIGKLETAWELFQSLPRVGLMPN-----VVTYNIMIHGFCNDG 209 (260)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g 209 (260)
.++.+.... +.+...+..+ ...+...|++++|...++.+.+.. |+ ...+..+...+.+.|
T Consensus 233 ~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 233 EVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCC
Confidence 999998764 4455555555 889999999999999999998853 44 347888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 210 QMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 310 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999998752 447889999999999999999999999998753
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=3e-22 Score=150.47 Aligned_cols=252 Identities=10% Similarity=-0.077 Sum_probs=215.9
Q ss_pred ChhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC-ChHHHHHHHH
Q 044047 1 MDEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTK-DVEESLNLYS 79 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~ 79 (260)
+++|+++++.+.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...|..+...+...| ++++|...++
T Consensus 38 ~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 115 (330)
T 3hym_B 38 FKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLS 115 (330)
T ss_dssp HHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 367899999998875 4466677778889999999999999999998875 667888999999999999 9999999999
Q ss_pred HHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC
Q 044047 80 EMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELG 159 (260)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (260)
+..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...... +.+
T Consensus 116 ~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~ 192 (330)
T 3hym_B 116 KATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PED 192 (330)
T ss_dssp HHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTC
T ss_pred HHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCC
Confidence 99887533 57788899999999999999999999998875 5556778889999999999999999999998775 667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC--------CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 044047 160 IEAYSCLIDGLCKIGKLETAWELFQSLPRVG--------LMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCV 231 (260)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 231 (260)
...+..+...+...|++++|...++.+.+.. .+.+..++..+...+...|++++|...+++..+.. +.+..
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~ 271 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNAS 271 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchH
Confidence 8889999999999999999999999887642 12345788999999999999999999999998763 44678
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 232 TFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
.+..+..++...|++++|.+.+++..+
T Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 272 TYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 888999999999999999999998765
No 10
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=1.1e-21 Score=149.80 Aligned_cols=249 Identities=11% Similarity=-0.018 Sum_probs=207.1
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|...|+.+.+.. +.++..+..+..++...|++++|...|+.+.+.+ +.+..++..+..++...|++++|...++++
T Consensus 81 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 81 PNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp HHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67889999999875 5578889999999999999999999999998876 668889999999999999999999999999
Q ss_pred HhcCCCCCccchHH---------------HHHHHhccccHHHHHHHHHHHhhcCCCc--chhhHHHHHHHHHhcCcHHHH
Q 044047 82 LSKGIRPTVVTYNT---------------LFHGLFEIHQVEHALKLFDEMQHSDVAA--ETSTYNTFIDGLCKNGYIVEA 144 (260)
Q Consensus 82 ~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 144 (260)
.+.... +...+.. .+..+...|++++|...++++.+.. +. +..++..+...+...|++++|
T Consensus 159 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 159 LRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp HHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHH
Confidence 886533 2222221 2333448899999999999998765 33 578889999999999999999
Q ss_pred HHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 145 AELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
...++++.... +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++.+.
T Consensus 237 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 237 VDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999988765 5678899999999999999999999999988764 235788999999999999999999999998764
Q ss_pred CCC----------CChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 225 GVA----------PNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 225 ~~~----------p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
... ....+|..+..++...|++++|..++++-
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 211 11678999999999999999999887653
No 11
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=2.8e-22 Score=153.04 Aligned_cols=248 Identities=10% Similarity=0.004 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|++.|+.+.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..+|..+..++...|++++|+..++++
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 82 PVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNW 159 (365)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 56788888888765 4467788888888888888888888888887765 556778888888888888888888888888
Q ss_pred HhcCCCCCcc----------chHHHHHHHhccccHHHHHHHHHHHhhcCCCc--chhhHHHHHHHHHhcCcHHHHHHHHH
Q 044047 82 LSKGIRPTVV----------TYNTLFHGLFEIHQVEHALKLFDEMQHSDVAA--ETSTYNTFIDGLCKNGYIVEAAELFR 149 (260)
Q Consensus 82 ~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (260)
.+.... +.. .+..+...+...|++++|..+++++.+.. +. +..++..+...+...|++++|...++
T Consensus 160 l~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 237 (365)
T 4eqf_A 160 IKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237 (365)
T ss_dssp HHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 765321 122 22334677788888888888888887764 33 57778888888888888888888888
Q ss_pred HhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---
Q 044047 150 TLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGV--- 226 (260)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--- 226 (260)
++.... +.+..++..+..+|...|++++|...++++.+... .+..++..+..++...|++++|...|+++.+...
T Consensus 238 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 238 AALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 887765 55677888888888888888888888888877532 2467788888888888888888888888765310
Q ss_pred C--------CChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 227 A--------PNCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 227 ~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
. .+...|..+..++...|+.+.+..+.++
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 316 NQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -----------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 0 1356777888888888888877776554
No 12
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=8.4e-22 Score=147.86 Aligned_cols=250 Identities=10% Similarity=-0.040 Sum_probs=210.9
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|..+|+.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++
T Consensus 38 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 38 AEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAW 115 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67899999998875 4578889999999999999999999999998875 667889999999999999999999999999
Q ss_pred HhcCCCCCccchHHH--------------HH-HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHH
Q 044047 82 LSKGIRPTVVTYNTL--------------FH-GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAE 146 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (260)
.+.... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 116 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 116 LLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp HHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 886433 33334333 33 3778899999999999998875 5678889999999999999999999
Q ss_pred HHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044047 147 LFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGV 226 (260)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 226 (260)
.++.+.... +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+...
T Consensus 194 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 194 NLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999998765 5678899999999999999999999999988764 23578899999999999999999999999987521
Q ss_pred CC-----------ChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 227 AP-----------NCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 227 ~p-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
.. +..++..+..++...|++++|..++++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 272 GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11 47788899999999999999999887643
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=9.1e-22 Score=150.15 Aligned_cols=234 Identities=8% Similarity=-0.021 Sum_probs=198.0
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
+...+..+...+.+.|++++|...|+++.+.. |.+..+|..+..++...|++++|+..|+++.+.... +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34558889999999999999999999998876 678899999999999999999999999999987433 6788999999
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhH----------HHHHHHHHhcCcHHHHHHHHHHhhhcCCCc--CHHHHHHH
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTY----------NTFIDGLCKNGYIVEAAELFRTLRVLKCEL--GIEAYSCL 166 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 166 (260)
.+...|++++|...++++.+.. +.+...+ ..+...+...|++++|...++++.... +. ++.++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 9999999999999999998764 3223333 345888999999999999999998875 33 68899999
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCch
Q 044047 167 IDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNET 246 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 246 (260)
...+...|++++|...++++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999998864 2367899999999999999999999999999862 44588899999999999999
Q ss_pred hHHHHHHHHHhh
Q 044047 247 SKVVELLHRMDE 258 (260)
Q Consensus 247 ~~a~~~~~~m~~ 258 (260)
++|...++++.+
T Consensus 298 ~~A~~~~~~al~ 309 (365)
T 4eqf_A 298 REAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=5.3e-20 Score=139.68 Aligned_cols=251 Identities=12% Similarity=0.058 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|++.|+.+.+.. +.++..+..+..++...|++++|...++.+.+.. |.+...+..+..++...|++++|...+++.
T Consensus 20 ~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 20 ADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45666666666553 3355566666666666666666666666665553 345556666666666666666666666666
Q ss_pred HhcCCC--CCccchHHH------------HHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHH
Q 044047 82 LSKGIR--PTVVTYNTL------------FHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAEL 147 (260)
Q Consensus 82 ~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 147 (260)
.+.... .+...+..+ ...+...|++++|...++++.+.. +.+...+..+..++...|++++|...
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 98 LKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 554220 122222222 344455555555555555554443 33444455555555555555555555
Q ss_pred HHHhhhcCCCcCHHHHHHHHHHHHh----------------------------------------------cCCHHHHHH
Q 044047 148 FRTLRVLKCELGIEAYSCLIDGLCK----------------------------------------------IGKLETAWE 181 (260)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~----------------------------------------------~~~~~~a~~ 181 (260)
++.+.... +.+...+..+...+.. .|++++|..
T Consensus 177 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 255 (359)
T 3ieg_A 177 LKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 255 (359)
T ss_dssp HHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55544432 3344444444444444 455555555
Q ss_pred HHHhhhhCCCCCch----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 182 LFQSLPRVGLMPNV----VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 182 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
.++.+.+.... +. ..+..+..++...|++++|...+++..+. .+.+..++..+..++...|++++|.+.+++..
T Consensus 256 ~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 256 KYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55444443211 11 12333445555666666666666666554 13345556666666666666666666666654
Q ss_pred h
Q 044047 258 E 258 (260)
Q Consensus 258 ~ 258 (260)
+
T Consensus 334 ~ 334 (359)
T 3ieg_A 334 E 334 (359)
T ss_dssp T
T ss_pred h
Confidence 4
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=7.2e-20 Score=138.96 Aligned_cols=210 Identities=8% Similarity=0.005 Sum_probs=146.9
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccH
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQV 106 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (260)
...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++..+... .+..++..+...+...|++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 355556666666666666665544 44566666677777777777777777777766532 2566677777777777777
Q ss_pred HHHHHHHHHHhhcCCCcchhhHHH------------HHHHHHhcCcHHHHHHHHHHhhhcCCCcCH----HHHHHHHHHH
Q 044047 107 EHALKLFDEMQHSDVAAETSTYNT------------FIDGLCKNGYIVEAAELFRTLRVLKCELGI----EAYSCLIDGL 170 (260)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 170 (260)
++|...+++..+.. +.+...+.. +...+...|++++|...++.+.... +.+. ..+..+...+
T Consensus 205 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 205 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHH
Confidence 77777777776654 333333332 2555777888888888888777654 2233 2355678899
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 044047 171 CKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIR 242 (260)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 242 (260)
...|++++|...++...+.. +.+..++..+...+...|++++|...|+++.+.. +-+...+..+..+...
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 99999999999999998864 2367899999999999999999999999999862 3345556666655543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.9e-20 Score=140.67 Aligned_cols=238 Identities=11% Similarity=0.026 Sum_probs=206.6
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHH
Q 044047 16 VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNT 95 (260)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (260)
.+.++..+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++.+.... +...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 35567778889999999999999999999998876 667788888999999999999999999999987443 6788889
Q ss_pred HHHHHhccc-cHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcC
Q 044047 96 LFHGLFEIH-QVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIG 174 (260)
Q Consensus 96 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (260)
+...+...| ++++|...|++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999998875 5567889999999999999999999999998775 445677788999999999
Q ss_pred CHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCch
Q 044047 175 KLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKG--------VAPNCVTFNTLMLGCIRNNET 246 (260)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~ 246 (260)
++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998875 3357889999999999999999999999987641 134467889999999999999
Q ss_pred hHHHHHHHHHhh
Q 044047 247 SKVVELLHRMDE 258 (260)
Q Consensus 247 ~~a~~~~~~m~~ 258 (260)
++|...+++..+
T Consensus 253 ~~A~~~~~~a~~ 264 (330)
T 3hym_B 253 AEALDYHRQALV 264 (330)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=5.4e-21 Score=145.89 Aligned_cols=233 Identities=12% Similarity=0.043 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
...+..+...+.+.|++++|...|+++.+.. |.+..++..+..++...|++++|+..++++.+.... +..++..+...
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 4567789999999999999999999999876 678889999999999999999999999999987543 77889999999
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHH---------------HHHHHHhcCcHHHHHHHHHHhhhcCCCc--CHHH
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNT---------------FIDGLCKNGYIVEAAELFRTLRVLKCEL--GIEA 162 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 162 (260)
+...|++++|...++++.... +.+...+.. .+..+...|++++|...++++.... +. +..+
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 219 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDV 219 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHH
Confidence 999999999999999998865 333333321 2333448999999999999998765 33 6889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIR 242 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 242 (260)
+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 9999999999999999999999998864 2357889999999999999999999999998863 4467889999999999
Q ss_pred cCchhHHHHHHHHHhh
Q 044047 243 NNETSKVVELLHRMDE 258 (260)
Q Consensus 243 ~~~~~~a~~~~~~m~~ 258 (260)
.|++++|...++++.+
T Consensus 298 ~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 298 LGAHREAVEHFLEALN 313 (368)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998765
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.5e-20 Score=145.83 Aligned_cols=250 Identities=11% Similarity=-0.007 Sum_probs=179.2
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|++.|+++.+.+ |++..|..+..++.+.|++++|...++.+.+.+ |.+..+|..+..++...|++++|...|+++
T Consensus 23 ~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 23 DDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 67999999999875 689999999999999999999999999998876 667889999999999999999999999998
Q ss_pred HhcCCCCC------------------------------------------------------------------------
Q 044047 82 LSKGIRPT------------------------------------------------------------------------ 89 (260)
Q Consensus 82 ~~~~~~~~------------------------------------------------------------------------ 89 (260)
.+.+...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (514)
T 2gw1_A 100 SLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179 (514)
T ss_dssp HHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSS
T ss_pred HhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHH
Confidence 77643111
Q ss_pred ------ccchHHHHHHHh---ccccHHHHHHHHHHHhh-----cCC--------CcchhhHHHHHHHHHhcCcHHHHHHH
Q 044047 90 ------VVTYNTLFHGLF---EIHQVEHALKLFDEMQH-----SDV--------AAETSTYNTFIDGLCKNGYIVEAAEL 147 (260)
Q Consensus 90 ------~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~ 147 (260)
...+......+. +.|++++|..+|+++.+ ... +.+..++..+...+...|++++|...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 259 (514)
T 2gw1_A 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259 (514)
T ss_dssp CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 111122222222 37888888888888776 210 23355677778888888888888888
Q ss_pred HHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 044047 148 FRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVA 227 (260)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 227 (260)
++.+...... ...+..+...+...|++++|...++.+..... .+..++..+...+...|++++|...++++.+.. +
T Consensus 260 ~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 335 (514)
T 2gw1_A 260 IKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-P 335 (514)
T ss_dssp HHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-S
T ss_pred HHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-h
Confidence 8887765422 66677777777777777777777777666532 245566666677777777777777777766642 2
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 228 PNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 228 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
.+...+..+...+...|++++|..+++++.+
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKR 366 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2455566666666666666666666666543
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=6.9e-20 Score=137.42 Aligned_cols=234 Identities=8% Similarity=-0.069 Sum_probs=198.6
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+.... +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 45567778899999999999999999998875 668889999999999999999999999999887433 6778889999
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhHHHH--------------HH-HHHhcCcHHHHHHHHHHhhhcCCCcCHHHH
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTF--------------ID-GLCKNGYIVEAAELFRTLRVLKCELGIEAY 163 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (260)
.+...|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.... +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999998764 3344444443 33 4778899999999999998775 5578899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 044047 164 SCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRN 243 (260)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 243 (260)
..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998764 2357889999999999999999999999998863 44678899999999999
Q ss_pred CchhHHHHHHHHHhh
Q 044047 244 NETSKVVELLHRMDE 258 (260)
Q Consensus 244 ~~~~~a~~~~~~m~~ 258 (260)
|++++|.+.++++.+
T Consensus 254 g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIY 268 (327)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999998764
No 20
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6e-20 Score=146.06 Aligned_cols=252 Identities=12% Similarity=0.006 Sum_probs=215.8
Q ss_pred hhHHHHHHHHHH-----c--CC------CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhc
Q 044047 2 DEASRLLDLMIQ-----R--GV------RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKT 68 (260)
Q Consensus 2 ~~a~~~~~~~~~-----~--~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 68 (260)
++|...++++.+ . .. +.+...+..+...+...|++++|...++.+.+.+ |+..++..+..++...
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHC
Confidence 578888888877 3 11 3356788899999999999999999999998875 3388899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHH
Q 044047 69 KDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELF 148 (260)
Q Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 148 (260)
|++++|...++++.+.... +..++..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+
T Consensus 284 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp SCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999887443 67788999999999999999999999998875 556788999999999999999999999
Q ss_pred HHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-Cc----hhhHHHHHHHHHh---cCChHHHHHHHHH
Q 044047 149 RTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM-PN----VVTYNIMIHGFCN---DGQMDKAHDLFLD 220 (260)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~ 220 (260)
+.+.... +.+...+..+...+...|++++|...++.+...... ++ ..++..+...+.. .|++++|...+++
T Consensus 362 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 362 SEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 9998765 556788999999999999999999999998765321 11 3388999999999 9999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 221 MEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 221 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
+.+.. +.+..++..+..++...|++++|...+++..+.
T Consensus 441 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 441 ASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 98863 446788889999999999999999999988653
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=9e-20 Score=134.63 Aligned_cols=225 Identities=10% Similarity=0.056 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-ccchHHHHHH
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT-VVTYNTLFHG 99 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 99 (260)
.....+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|++.++++...+..|+ ...+..+...
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~ 110 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 4556678999999999999986654 2 367888899999999999999999999999988765554 5566677789
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH--HHHHHHHHHhcCCHH
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEA--YSCLIDGLCKIGKLE 177 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 177 (260)
+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.++.+.... +.+... ...++..+...|+++
T Consensus 111 ~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-EDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp HHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTHHH
T ss_pred HHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhCchHHH
Confidence 9999999999999987 5677889999999999999999999999998774 222211 122334455668999
Q ss_pred HHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhH-HHHHHHHH
Q 044047 178 TAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSK-VVELLHRM 256 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~m 256 (260)
+|..+|+++.+.. +.+...++.+..++...|++++|...+++..+.. +-+..++..++..+...|+.++ +.++++++
T Consensus 184 eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 184 DAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999998873 4578889999999999999999999999998863 4478889999999999999976 57888887
Q ss_pred hh
Q 044047 257 DE 258 (260)
Q Consensus 257 ~~ 258 (260)
.+
T Consensus 262 ~~ 263 (291)
T 3mkr_A 262 KD 263 (291)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 22
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=8.6e-20 Score=129.14 Aligned_cols=199 Identities=14% Similarity=0.020 Sum_probs=117.1
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHH
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTL 96 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 96 (260)
|+++..+..+...+.+.|++++|...|++..+.+ |.+...+..+..++.+.|++++|+..+++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4566677777777778888888888887777665 566777777777777888888888888777776433 45666667
Q ss_pred HHHHhcc-----------ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHH
Q 044047 97 FHGLFEI-----------HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSC 165 (260)
Q Consensus 97 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (260)
...+... |++++|+..+++..+.. |.+...+..+..++...|++++|+..+++..... .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777666 66666666666655543 3445555555566666666666666666655554 45555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
+..++...|++++|...++.+.+... .+...+..+...+...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56666666666666666665555421 23445555555555566666655555543
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=5.9e-19 Score=141.14 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=188.5
Q ss_pred ChhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 044047 1 MDEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSE 80 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 80 (260)
+++|++.|+.+.+.. |.++..|..+..++.+.|++++|.+.++++.+.+ |.+..++..+..++...|++++|+..|+.
T Consensus 41 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 118 (537)
T 3fp2_A 41 FNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSV 118 (537)
T ss_dssp CC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467899999999876 5588999999999999999999999999998876 66788999999999999999999887753
Q ss_pred HHhc----------------------------------------------------------------------------
Q 044047 81 MLSK---------------------------------------------------------------------------- 84 (260)
Q Consensus 81 ~~~~---------------------------------------------------------------------------- 84 (260)
+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (537)
T 3fp2_A 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198 (537)
T ss_dssp HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHH
Confidence 3110
Q ss_pred -------------------------------CCCCC--------ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcch
Q 044047 85 -------------------------------GIRPT--------VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAET 125 (260)
Q Consensus 85 -------------------------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 125 (260)
...|+ ..++..+...+...|++++|...+++..+.. |+.
T Consensus 199 ~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~ 276 (537)
T 3fp2_A 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTP 276 (537)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCc
Confidence 00111 1123344455666677777877777777654 346
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHH
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGF 205 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (260)
..+..+...+...|++++|...++.+.... +.+..++..+...+...|++++|...++.+.+... .+...+..+...+
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 354 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 677777777888888888888888777654 55677788888888888888888888888777542 2456777888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 206 CNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 206 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888888888888887752 44566777888888888888888888887654
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.86 E-value=1.1e-19 Score=128.62 Aligned_cols=201 Identities=8% Similarity=0.002 Sum_probs=166.0
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHH
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTF 131 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (260)
|++...+..+...+...|++++|+..|++..+..+. +...+..+...+.+.|++++|+..+++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 677888999999999999999999999999987544 67888999999999999999999999999886 6678889999
Q ss_pred HHHHHhc-----------CcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHH
Q 044047 132 IDGLCKN-----------GYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNI 200 (260)
Q Consensus 132 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (260)
..++... |++++|+..+++..... |.+...+..+...+...|++++|...+++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998875 5678899999999999999999999999999887 57889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 201 MIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 201 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+..++...|++++|...|++..+.. +.+...+..+..++...|++++|...+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999999862 44678888999999999999999999987653
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.7e-19 Score=128.94 Aligned_cols=226 Identities=9% Similarity=0.016 Sum_probs=190.7
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CC----ccc
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIR--PT----VVT 92 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 92 (260)
.+..+..+...+...|++++|...|+.+.+.. .+..++..+..++...|++++|+..+++..+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 45678889999999999999999999998877 77889999999999999999999999998775322 11 577
Q ss_pred hHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHh
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCK 172 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (260)
+..+...+...|++++|...|++..+.. |+. ..+...|++++|...++.+.... +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 8889999999999999999999988754 332 45667788999999999988764 5567788889999999
Q ss_pred cCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 044047 173 IGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVEL 252 (260)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 252 (260)
.|++++|...++.+.+... .+..++..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999887643 357888999999999999999999999998863 44678888999999999999999999
Q ss_pred HHHHhh
Q 044047 253 LHRMDE 258 (260)
Q Consensus 253 ~~~m~~ 258 (260)
+++..+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=6.7e-19 Score=140.83 Aligned_cols=250 Identities=12% Similarity=0.068 Sum_probs=209.2
Q ss_pred hhHHHHHHHHHHcCCCcc-------HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHH
Q 044047 2 DEASRLLDLMIQRGVRPN-------AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEES 74 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 74 (260)
++|.++++.+.+... .+ ..++..+...+...|++++|...++.+.+.. |+..++..+...+...|++++|
T Consensus 219 ~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 219 TKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHH
Confidence 567888888887642 23 3357777788899999999999999998874 5588899999999999999999
Q ss_pred HHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 044047 75 LNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (260)
...++++.+.... +..++..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++.+...
T Consensus 296 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 296 FKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999887543 67889999999999999999999999998875 556788999999999999999999999999887
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-----CchhhHHHHHHHHHhc----------CChHHHHHHHH
Q 044047 155 KCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM-----PNVVTYNIMIHGFCND----------GQMDKAHDLFL 219 (260)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~a~~~~~ 219 (260)
. +.+...+..+...+...|++++|...++.+.+.... .....+......+... |++++|...++
T Consensus 374 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 374 F-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 5 667788999999999999999999999998764311 1122344556677777 99999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 220 DMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 220 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
++.+.. +.+...+..+..++...|++++|.+.+++..+
T Consensus 453 ~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 453 KACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999863 44678899999999999999999999998765
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=159.94 Aligned_cols=151 Identities=13% Similarity=0.178 Sum_probs=124.2
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHh---hcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMD---INGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNT 95 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (260)
-..+|+++|++|++.|++++|.++|+.|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999998875 458899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccH-HHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC------HHHHHHHHH
Q 044047 96 LFHGLFEIHQV-EHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELG------IEAYSCLID 168 (260)
Q Consensus 96 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 168 (260)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+. .+++.++++. .++.|+ ..+...+..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~-P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVK-PTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGC-CCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhC-cccCCCCCCcccccchHHHHH
Confidence 99999999984 78999999999999999999999998766553 3444444442 222322 334444556
Q ss_pred HHHhcC
Q 044047 169 GLCKIG 174 (260)
Q Consensus 169 ~~~~~~ 174 (260)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.85 E-value=1.8e-18 Score=126.50 Aligned_cols=235 Identities=11% Similarity=0.007 Sum_probs=192.9
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc----hH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVT----YN 94 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~ 94 (260)
|+..+......+...|++++|...|+++.+.. |.+...+..+..++...|++++|+..+++..+.+ ++... |.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHH
Confidence 34456677888999999999999999998875 5567789999999999999999999999998843 23333 78
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcC
Q 044047 95 TLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIG 174 (260)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (260)
.+...+...|++++|+..|++..+.. +.+...+..+...|...|++++|...+++..... +.+...+..+...+...+
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 89999999999999999999998875 5677899999999999999999999999998774 667788888883444556
Q ss_pred CHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCC-CCCC------hhhHHHHHHHHHhcC
Q 044047 175 KLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQ---MDKAHDLFLDMEAKG-VAPN------CVTFNTLMLGCIRNN 244 (260)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~~ 244 (260)
++++|...++.+.+... .+...+..+..++...|+ +++|...+++..+.. -.|+ ..++..+...|...|
T Consensus 157 ~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 99999999999988642 246778888888888888 888999998887641 1233 257788899999999
Q ss_pred chhHHHHHHHHHhhc
Q 044047 245 ETSKVVELLHRMDER 259 (260)
Q Consensus 245 ~~~~a~~~~~~m~~~ 259 (260)
++++|.+.+++..+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988753
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=157.83 Aligned_cols=115 Identities=13% Similarity=0.188 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhh---hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHH
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLR---VLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMI 202 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 202 (260)
.+|+++|.+|++.|++++|.++|.+|. ..|+.||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 455566666666666666665555443 23455566666666666666666666666666665555556666666666
Q ss_pred HHHHhcCCh-HHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044047 203 HGFCNDGQM-DKAHDLFLDMEAKGVAPNCVTFNTLMLGC 240 (260)
Q Consensus 203 ~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 240 (260)
.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 655555553 45555666665555666665555554433
No 30
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=3.7e-17 Score=119.71 Aligned_cols=225 Identities=9% Similarity=-0.018 Sum_probs=197.3
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCccch
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK----TKDVEESLNLYSEMLSKGIRPTVVTY 93 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (260)
-++..+..+...+...|++++|...|++..+. .+..++..+...+.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 36778888999999999999999999999874 356788889999999 999999999999999875 67888
Q ss_pred HHHHHHHhc----cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh----cCcHHHHHHHHHHhhhcCCCcCHHHHHH
Q 044047 94 NTLFHGLFE----IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK----NGYIVEAAELFRTLRVLKCELGIEAYSC 165 (260)
Q Consensus 94 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (260)
..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++....+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 889999999 999999999999998875 56788899999999 999999999999998865 5677888
Q ss_pred HHHHHHh----cCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 044047 166 LIDGLCK----IGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCN----DGQMDKAHDLFLDMEAKGVAPNCVTFNTLM 237 (260)
Q Consensus 166 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 237 (260)
+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888888 999999999999998864 56788889999999 999999999999999864 367788888
Q ss_pred HHHHh----cCchhHHHHHHHHHhhcC
Q 044047 238 LGCIR----NNETSKVVELLHRMDERN 260 (260)
Q Consensus 238 ~~~~~----~~~~~~a~~~~~~m~~~~ 260 (260)
..|.. .+++++|.+.+++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99998 999999999999887653
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.83 E-value=4.2e-18 Score=129.85 Aligned_cols=233 Identities=10% Similarity=-0.001 Sum_probs=201.5
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKD-VEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
+...|..+...+.+.|++++|+..++++.+.+ |.+..+|+.+..++...|+ +++|+..+++..+.... +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 45678889999999999999999999999886 6788999999999999996 99999999999997655 788999999
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHh-cCCH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCK-IGKL 176 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 176 (260)
.++...|++++|+..|+++.+.. +.+...|..+..++...|++++|+..+++++... +.+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999886 6788999999999999999999999999999886 6688899999999999 6665
Q ss_pred HHH-----HHHHHhhhhCCCCCchhhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----
Q 044047 177 ETA-----WELFQSLPRVGLMPNVVTYNIMIHGFCNDG--QMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNN----- 244 (260)
Q Consensus 177 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----- 244 (260)
++| +..+++...... -+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 588888887642 25778999999999888 689999999988 43 3456778888999998874
Q ss_pred ----chhHHHHHHHHH-hh
Q 044047 245 ----ETSKVVELLHRM-DE 258 (260)
Q Consensus 245 ----~~~~a~~~~~~m-~~ 258 (260)
..++|.++++++ .+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE 347 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 358999999998 54
No 32
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.83 E-value=1.4e-17 Score=118.14 Aligned_cols=214 Identities=12% Similarity=-0.020 Sum_probs=177.7
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHH
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTL 96 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 96 (260)
+.++..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 4467788899999999999999999999998775 567888999999999999999999999999886433 67788889
Q ss_pred HHHHhcc-ccHHHHHHHHHHHhhcCC-CcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcC
Q 044047 97 FHGLFEI-HQVEHALKLFDEMQHSDV-AAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIG 174 (260)
Q Consensus 97 ~~~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (260)
...+... |++++|...++++.+.+. +.+...+..+..++...|++++|...++++.... +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 999999999999887322 3346778889999999999999999999988765 556888899999999999
Q ss_pred CHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 044047 175 KLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNT 235 (260)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 235 (260)
++++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+. .|+......
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 99999999999887643135677788888888999999999999998764 355444433
No 33
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.83 E-value=1e-17 Score=121.08 Aligned_cols=201 Identities=14% Similarity=0.039 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
+..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 5667777778888888888888888877664 556777778888888888888888888887776432 56677777777
Q ss_pred HhccccHHHHHHHHHHHhhcCC-CcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 044047 100 LFEIHQVEHALKLFDEMQHSDV-AAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (260)
+...|++++|..+++++.+.+. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888776222 3345667777777888888888888888777654 4456777778888888888888
Q ss_pred HHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 179 AWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
|...++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888777653 235566777777777888888888888887764
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=1.3e-18 Score=127.43 Aligned_cols=242 Identities=10% Similarity=-0.069 Sum_probs=191.4
Q ss_pred hhHHHHHHHHHHcCC---CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 044047 2 DEASRLLDLMIQRGV---RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLY 78 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 78 (260)
++|++.++.+.+... +.++..+..+...+...|++++|...|+++.+.+ +.+..+|..+..++...|++++|+..+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 100 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAF 100 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 678999999988632 2357789999999999999999999999998876 667899999999999999999999999
Q ss_pred HHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc
Q 044047 79 SEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL 158 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (260)
++..+.... +..++..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++...... ++
T Consensus 101 ~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 176 (275)
T 1xnf_A 101 DSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DK 176 (275)
T ss_dssp HHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CC
T ss_pred HHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc
Confidence 999987433 67889999999999999999999999998864 333344445556677799999999998877654 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 044047 159 GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMP---NVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNT 235 (260)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 235 (260)
+...+ .++..+...++.++|...+.......... +..++..+...+...|++++|...|++..+. .|+. +..
T Consensus 177 ~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~ 251 (275)
T 1xnf_A 177 EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVE 251 (275)
T ss_dssp CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHH
T ss_pred chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHH
Confidence 44444 36777888889999999999887653211 1578889999999999999999999999985 3432 223
Q ss_pred HHHHHHhcCchhHHHHHH
Q 044047 236 LMLGCIRNNETSKVVELL 253 (260)
Q Consensus 236 l~~~~~~~~~~~~a~~~~ 253 (260)
...++...|++++|++.+
T Consensus 252 ~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 456777889998888765
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=1.5e-17 Score=122.81 Aligned_cols=223 Identities=9% Similarity=0.033 Sum_probs=181.2
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchH
Q 044047 16 VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGC-MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYN 94 (260)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (260)
-+|+..++..+...+...++.++|.+.++++...+. |.+...+..+...+...|++++|++.+++ +.+...+.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~ 134 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMA 134 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHH
Confidence 366788899999999999999999999999987764 44667778888999999999999999987 35778899
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhcCCCcchhhH---HHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHH
Q 044047 95 TLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTY---NTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLC 171 (260)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (260)
.++..+.+.|++++|...++++.+.. |+.... ..++..+...|++++|..+|+++.... +.++..++.+..++.
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 99999999999999999999998875 332211 223344556699999999999999874 778999999999999
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHH-HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHH
Q 044047 172 KIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDK-AHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVV 250 (260)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 250 (260)
+.|++++|...++++..... -+..++..++..+...|+.++ +.++++++.+. .|+... +.....+.+.++++.
T Consensus 212 ~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLV 285 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHH
Confidence 99999999999999988652 367889999999999999976 67899999875 555543 334556667777765
Q ss_pred HHH
Q 044047 251 ELL 253 (260)
Q Consensus 251 ~~~ 253 (260)
.-|
T Consensus 286 ~~~ 288 (291)
T 3mkr_A 286 LQY 288 (291)
T ss_dssp HHH
T ss_pred HHc
Confidence 543
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.83 E-value=1.7e-18 Score=124.46 Aligned_cols=213 Identities=13% Similarity=0.091 Sum_probs=163.1
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
.++..|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|+..+++..+.... +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 456678888899999999999999999998765 667889999999999999999999999999887433 677888899
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLE 177 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (260)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998875 5677888899999999999999999999988765 567888999999999999999
Q ss_pred HHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 044047 178 TAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTL 236 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 236 (260)
+|...++.+.+... .+..++..+..++...|++++|...++++.+.. +.+...+..+
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 99999999887642 357788999999999999999999999998852 2234444433
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.9e-18 Score=122.60 Aligned_cols=209 Identities=13% Similarity=0.058 Sum_probs=181.9
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC--CCc----hhhHHHHHHHHHhcCChHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGC--MHN----VVTYNTLINGYCKTKDVEESL 75 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~ 75 (260)
++|.+.|+...+.. .++..+..+..++...|++++|...++.+.+... .++ ..++..+..++...|++++|.
T Consensus 22 ~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 99 (258)
T 3uq3_A 22 DEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTI 99 (258)
T ss_dssp HHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHH
Confidence 68999999999887 7889999999999999999999999999876531 111 578999999999999999999
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC
Q 044047 76 NLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK 155 (260)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (260)
..+++..+.. |+ ...+...|++++|...++++.... +.+...+..+...+...|++++|...+++.....
T Consensus 100 ~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 100 EYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp HHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999998863 33 245677899999999999998875 5667888999999999999999999999998876
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 156 CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
+.+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...+++..+.
T Consensus 170 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 170 -PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6678899999999999999999999999998864 235788999999999999999999999998864
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=2.9e-17 Score=118.75 Aligned_cols=201 Identities=11% Similarity=-0.028 Sum_probs=175.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
...|..+...+...|++++|...++++.+.... +..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 577888999999999999999999999887433 67788899999999999999999999998875 5577889999999
Q ss_pred HHhcCcHHHHHHHHHHhhhcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHH
Q 044047 135 LCKNGYIVEAAELFRTLRVLKC-ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDK 213 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (260)
+...|++++|.+.++++...+. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987322 33567888899999999999999999999988642 357888999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 214 AHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 214 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
|...++++.+. .+.+...+..+...+...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999886 3456778888999999999999999999998753
No 39
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.4e-19 Score=137.48 Aligned_cols=216 Identities=12% Similarity=0.136 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|.+.++++ +++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+..++..
T Consensus 20 d~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 20 DRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4566666665 3446899999999999999999999965 357779999999999999999999988777
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHH
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIE 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (260)
++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ .
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------T
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 664 4467888899999999999999888874 366679999999999999999999999976 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCI 241 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 241 (260)
.|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHH
Confidence 6889999999999999999999988 2678999999999999999999665543 2234444557889999
Q ss_pred hcCchhHHHHHHHHHhh
Q 044047 242 RNNETSKVVELLHRMDE 258 (260)
Q Consensus 242 ~~~~~~~a~~~~~~m~~ 258 (260)
+.|.+++|..+++....
T Consensus 219 k~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 219 DRGYFEELITMLEAALG 235 (449)
T ss_dssp HTTCHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHhC
Confidence 99999999999887643
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.80 E-value=1.1e-17 Score=120.14 Aligned_cols=202 Identities=14% Similarity=0.153 Sum_probs=160.0
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 044047 53 HNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFI 132 (260)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (260)
.....|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 35667888888999999999999999999886433 67888889999999999999999999998875 56788899999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChH
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (260)
..+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998765 56788899999999999999999999999987642 36778899999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 213 KAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 213 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
+|...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999998863 446788999999999999999999999988653
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=6.4e-17 Score=114.71 Aligned_cols=204 Identities=10% Similarity=-0.030 Sum_probs=175.2
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHH
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTF 131 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (260)
+.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...+++..+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 446778899999999999999999999999887433 57788899999999999999999999998875 5677889999
Q ss_pred HHHHHhc-CcHHHHHHHHHHhhhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcC
Q 044047 132 IDGLCKN-GYIVEAAELFRTLRVLKCEL-GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDG 209 (260)
Q Consensus 132 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (260)
...+... |++++|...++.+...+..| +...+..+...+...|++++|...++.+.+... .+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcC
Confidence 9999999 99999999999998732223 367888999999999999999999999987642 35788899999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 210 QMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999998763215677788888888999999999999998764
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=4.5e-17 Score=119.02 Aligned_cols=231 Identities=10% Similarity=0.069 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch----hhHHHHHHHHHhcCChHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV----VTYNTLINGYCKTKDVEESLNL 77 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 77 (260)
++|++.|+...+.. +.+...+..+..++...|++++|...++.+.+.+ ++. .+|..+..++...|++++|+..
T Consensus 20 ~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 96 (272)
T 3u4t_A 20 AEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKILMKKGQDSLAIQQ 96 (272)
T ss_dssp HHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 67999999999875 3466688899999999999999999999998743 333 3488999999999999999999
Q ss_pred HHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 044047 78 YSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE 157 (260)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (260)
+++..+.... +..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...++.+.... +
T Consensus 97 ~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p 173 (272)
T 3u4t_A 97 YQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-P 173 (272)
T ss_dssp HHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-c
Confidence 9999987443 67889999999999999999999999998874 5667778788734445569999999999998875 5
Q ss_pred cCHHHHHHHHHHHHhcCC---HHHHHHHHHhhhhCC-CCCc------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 044047 158 LGIEAYSCLIDGLCKIGK---LETAWELFQSLPRVG-LMPN------VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVA 227 (260)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 227 (260)
.+...+..+...+...|+ +++|...++++.+.. ..|+ ..+|..+...|...|++++|...+++..+.. +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p 252 (272)
T 3u4t_A 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-P 252 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-c
Confidence 567888888888888888 888988888876542 1123 2578889999999999999999999999862 3
Q ss_pred CChhhHHHHHHH
Q 044047 228 PNCVTFNTLMLG 239 (260)
Q Consensus 228 p~~~~~~~l~~~ 239 (260)
-+......+...
T Consensus 253 ~~~~a~~~l~~~ 264 (272)
T 3u4t_A 253 TNKKAIDGLKMK 264 (272)
T ss_dssp TCHHHHHHHC--
T ss_pred cHHHHHHHhhhh
Confidence 344444444333
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=1.6e-16 Score=121.18 Aligned_cols=233 Identities=12% Similarity=0.066 Sum_probs=194.7
Q ss_pred ChhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCC-HHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 044047 1 MDEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGE-IDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYS 79 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 79 (260)
+++|++.++...+.+ +-+...|+.+..++...|+ +++|+..|+++.+.+ +.+...|..+..++...|++++|+..|+
T Consensus 113 ~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~ 190 (382)
T 2h6f_A 113 SERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIA 190 (382)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred hHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 468999999999886 4578899999999999997 999999999999887 6788999999999999999999999999
Q ss_pred HHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh-cCcHHHH-----HHHHHHhhh
Q 044047 80 EMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK-NGYIVEA-----AELFRTLRV 153 (260)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~ 153 (260)
++.+.... +...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..++| +..+++...
T Consensus 191 kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~ 268 (382)
T 2h6f_A 191 DILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268 (382)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 99997655 78899999999999999999999999999987 6688899999999999 6665777 588888887
Q ss_pred cCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcC---------ChHHHHHHHHHH-
Q 044047 154 LKCELGIEAYSCLIDGLCKIG--KLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDG---------QMDKAHDLFLDM- 221 (260)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~- 221 (260)
.. +-+...|..+...+...| ++++|.+.+..+ +.. +.+...+..+..+|...| ..++|..+++++
T Consensus 269 l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~ 345 (382)
T 2h6f_A 269 LV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA 345 (382)
T ss_dssp HS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 65 667889999999999888 689999999888 432 335678888999998874 358999999998
Q ss_pred HhCCCCCC-hhhHHHHHHHHHh
Q 044047 222 EAKGVAPN-CVTFNTLMLGCIR 242 (260)
Q Consensus 222 ~~~~~~p~-~~~~~~l~~~~~~ 242 (260)
.+. .|. ...|..+...+..
T Consensus 346 ~~~--DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 346 KEK--DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HTT--CGGGHHHHHHHHHHHHH
T ss_pred HHh--CchhHHHHHHHHHHHHH
Confidence 554 444 4555555555543
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=5.4e-17 Score=118.74 Aligned_cols=224 Identities=9% Similarity=-0.133 Sum_probs=181.5
Q ss_pred HhccCCHHHHHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccH
Q 044047 30 FCLTGEIDRARELFVSMDINGC---MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQV 106 (260)
Q Consensus 30 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (260)
....|++++|...++++.+... +.+..++..+..++...|++++|...++++.+.... +..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 4456899999999999987631 235678899999999999999999999999987543 678899999999999999
Q ss_pred HHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 044047 107 EHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSL 186 (260)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (260)
++|...|++..+.. +.+...+..+..++...|++++|...++.+.... +.+. ........+...|++++|...++..
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDP-FRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCh-HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998875 5577889999999999999999999999998764 3333 3344445557779999999999887
Q ss_pred hhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 187 PRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVA---PNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
.... +++... ..++..+...++.++|...+.+....... .+..++..+..++...|++++|...+++..+.
T Consensus 171 ~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 7653 233334 34777788888999999999988764211 12578889999999999999999999998764
No 45
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1e-15 Score=114.09 Aligned_cols=217 Identities=12% Similarity=0.025 Sum_probs=177.7
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhc-------cCCH-------HHHHHHHHHHhh-cCCCCchhhHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCL-------TGEI-------DRARELFVSMDI-NGCMHNVVTYNTLINGYC 66 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 66 (260)
++|..+|++..... +.++..|..++..+.. .|++ ++|..+|++..+ .. |.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 46778899888864 5578888888888763 5775 899999999987 34 556778999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCC-cc-chHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHH-hcCcHHH
Q 044047 67 KTKDVEESLNLYSEMLSKGIRPT-VV-TYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLC-KNGYIVE 143 (260)
Q Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 143 (260)
..|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999985 343 33 78999999999999999999999998865 445555554444322 3799999
Q ss_pred HHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC-CCC--chhhHHHHHHHHHhcCChHHHHHHHHH
Q 044047 144 AAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG-LMP--NVVTYNIMIHGFCNDGQMDKAHDLFLD 220 (260)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 220 (260)
|..+|+...... +.++..|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988765 5578899999999999999999999999999863 344 356788889999999999999999999
Q ss_pred HHhC
Q 044047 221 MEAK 224 (260)
Q Consensus 221 ~~~~ 224 (260)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 46
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.7e-15 Score=112.80 Aligned_cols=236 Identities=10% Similarity=0.041 Sum_probs=186.7
Q ss_pred cHHHHHHHHHHHhcc----CCH----HHHHHHHHHHhhcCCCCchhhHHHHHHHHHh-------cCCh-------HHHHH
Q 044047 19 NAFVYSTLIDGFCLT----GEI----DRARELFVSMDINGCMHNVVTYNTLINGYCK-------TKDV-------EESLN 76 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~ 76 (260)
+...|...+....+. ++. ++|..+|+++.... |.+...|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 344566666654443 233 68889999998765 6788899888888763 5886 89999
Q ss_pred HHHHHHhcCCCC-CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchh-hHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 044047 77 LYSEMLSKGIRP-TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETS-TYNTFIDGLCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 77 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (260)
+|++..+. +.| +...|..++..+...|++++|..+|++..+.. +.+.. .|..++..+.+.|++++|..+|++....
T Consensus 86 ~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 86 IYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999983 233 55688999999999999999999999998853 33344 7999999999999999999999999876
Q ss_pred CCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC--Ch
Q 044047 155 KCELGIEAYSCLIDGLC-KIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKG-VAP--NC 230 (260)
Q Consensus 155 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~ 230 (260)
. +.+...|...+.... ..|+.++|..+|+...+... -+...|..++..+.+.|++++|..+|++..... ++| ..
T Consensus 164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 5 445556654444432 37999999999999887632 357888999999999999999999999999863 455 35
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 231 VTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
..|..++....+.|+.+.|..+++++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67888899999999999999999988753
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.77 E-value=9e-17 Score=126.57 Aligned_cols=192 Identities=11% Similarity=-0.012 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHHhccCCH-HHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEI-DRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
+...+..+...+...|++ ++|.+.|++..+.. +.+..+|..+..+|...|++++|...|++..+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 344444444444455555 55555554444443 3334444445555555555555555555444432 3334444444
Q ss_pred HHHhcc---------ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc--------CcHHHHHHHHHHhhhcCCC---
Q 044047 98 HGLFEI---------HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN--------GYIVEAAELFRTLRVLKCE--- 157 (260)
Q Consensus 98 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--- 157 (260)
..+... |++++|+..+++..+.. +.+...+..+..+|... |++++|...|++..... +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 444444 45555555555444443 33344444444444444 44555555554444432 2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHH
Q 044047 158 LGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHD 216 (260)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 216 (260)
.+...|..+..+|...|++++|...|++..+... .+...+..+...+...|++++|..
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555544444321 123344444444444444444443
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.76 E-value=5.3e-16 Score=106.74 Aligned_cols=167 Identities=16% Similarity=0.097 Sum_probs=115.4
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
++.+|..+...+.+.|++++|+..|++..+.+ |.+..++..+..++.+.|++++|+..+.+....... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 55667777777777777777777777777665 556677777777777777777777777777665333 4555666666
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (260)
.+...++++.+...+.+..... +.+...+..+..++...|++++|++.+++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6677777777777777766654 4456666667777777777777777777766654 4556666677777777777777
Q ss_pred HHHHHHhhhhC
Q 044047 179 AWELFQSLPRV 189 (260)
Q Consensus 179 a~~~~~~~~~~ 189 (260)
|...|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777766653
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.75 E-value=5.1e-15 Score=108.29 Aligned_cols=206 Identities=10% Similarity=-0.012 Sum_probs=181.1
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh----cCChHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCL----TGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK----TKDVEE 73 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 73 (260)
++|.+.|++..+.+ ++..+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++
T Consensus 23 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 23 TQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHH
Confidence 57889999888843 56778889999999 999999999999998876 77889999999999 999999
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHhc----cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh----cCcHHHHH
Q 044047 74 SLNLYSEMLSKGIRPTVVTYNTLFHGLFE----IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK----NGYIVEAA 145 (260)
Q Consensus 74 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 145 (260)
|+..+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.
T Consensus 97 A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 170 (273)
T 1ouv_A 97 ALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKAL 170 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999874 67888889999998 999999999999998876 45677788888888 99999999
Q ss_pred HHHHHhhhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHh----cCChHHHHHH
Q 044047 146 ELFRTLRVLKCELGIEAYSCLIDGLCK----IGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCN----DGQMDKAHDL 217 (260)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 217 (260)
..++.....+ ++..+..+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|...
T Consensus 171 ~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~ 244 (273)
T 1ouv_A 171 ASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIEN 244 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999988764 56778889999999 999999999999998875 36778888999998 9999999999
Q ss_pred HHHHHhCC
Q 044047 218 FLDMEAKG 225 (260)
Q Consensus 218 ~~~~~~~~ 225 (260)
|++..+.|
T Consensus 245 ~~~a~~~~ 252 (273)
T 1ouv_A 245 FKKGCKLG 252 (273)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 99998865
No 50
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.75 E-value=1.5e-16 Score=125.27 Aligned_cols=215 Identities=10% Similarity=-0.044 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHH
Q 044047 36 IDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDV-EESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFD 114 (260)
Q Consensus 36 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 114 (260)
++++...++...... +.+...+..+...+...|++ ++|+..|++..+.... +...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777665543 55788999999999999999 9999999999987543 57889999999999999999999999
Q ss_pred HHhhcCCCcchhhHHHHHHHHHhc---------CcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhc--------CCHH
Q 044047 115 EMQHSDVAAETSTYNTFIDGLCKN---------GYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKI--------GKLE 177 (260)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 177 (260)
+..+.. |+...+..+..++... |++++|...+++..... +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998875 5578899999999999 99999999999998876 66788999999999998 9999
Q ss_pred HHHHHHHhhhhCCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 178 TAWELFQSLPRVGLM--PNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
+|...|++..+.... .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999886421 367889999999999999999999999998863 34567788899999999999999876654
Q ss_pred H
Q 044047 256 M 256 (260)
Q Consensus 256 m 256 (260)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
No 51
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=4.3e-17 Score=121.29 Aligned_cols=241 Identities=12% Similarity=0.006 Sum_probs=174.9
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhc-------CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc-----
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDIN-------GCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK----- 84 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 84 (260)
+.+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 446778899999999999999999999998763 22455678899999999999999999999998764
Q ss_pred -CC-CCCccchHHHHHHHhccccHHHHHHHHHHHhhc------C-CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc-
Q 044047 85 -GI-RPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS------D-VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL- 154 (260)
Q Consensus 85 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 154 (260)
+. .....++..+...+...|++++|...+++..+. + .+.....+..+...+...|++++|...++++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 223567888899999999999999999988654 2 2334567888999999999999999999988764
Q ss_pred -----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC-------CCCc-------hhhHHHHHHHHHhcCChHHH
Q 044047 155 -----K-CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG-------LMPN-------VVTYNIMIHGFCNDGQMDKA 214 (260)
Q Consensus 155 -----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~g~~~~a 214 (260)
+ .+....++..+...+...|++++|...++++.+.. ..+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 1 13345678889999999999999999999887531 1111 11222333334455666667
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 215 HDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 215 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
...+...... .+....++..+..+|...|++++|.+++++..+
T Consensus 264 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777766654 234567788899999999999999999998764
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.74 E-value=1.4e-15 Score=104.65 Aligned_cols=172 Identities=15% Similarity=0.124 Sum_probs=144.6
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 044047 53 HNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFI 132 (260)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (260)
.++.+|..+...+...|++++|++.|++..+..+. +..++..+..++...|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 46778889999999999999999999999887544 67788888999999999999999999988775 55677788888
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChH
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (260)
..+...++++.+...+....... +.+...+..+...+...|++++|.+.+++..+... .+..+|..+..++...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHH
Confidence 88899999999999998888765 66788888899999999999999999999887642 35778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCh
Q 044047 213 KAHDLFLDMEAKGVAPNC 230 (260)
Q Consensus 213 ~a~~~~~~~~~~~~~p~~ 230 (260)
+|...|++.++. .|+.
T Consensus 159 ~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHhC--CccC
Confidence 999999998874 4543
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.74 E-value=6.4e-17 Score=125.21 Aligned_cols=256 Identities=12% Similarity=0.042 Sum_probs=195.6
Q ss_pred hhHHHHHHHHHHcCCCccH----HHHHHHHHHHhccCCHHHHHHHHHHHhhc----C-CCCchhhHHHHHHHHHhcCChH
Q 044047 2 DEASRLLDLMIQRGVRPNA----FVYSTLIDGFCLTGEIDRARELFVSMDIN----G-CMHNVVTYNTLINGYCKTKDVE 72 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~ 72 (260)
++|++.|++..+.+.. +. ..+..+...+...|++++|...+++..+. + .+....++..+...+...|+++
T Consensus 65 ~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 143 (411)
T 4a1s_A 65 RAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD 143 (411)
T ss_dssp HHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHH
Confidence 6789999998887532 33 57888999999999999999999887653 1 1334567888999999999999
Q ss_pred HHHHHHHHHHhcC-----CCCCccchHHHHHHHhcccc-----------------HHHHHHHHHHHhhc----C-CCcch
Q 044047 73 ESLNLYSEMLSKG-----IRPTVVTYNTLFHGLFEIHQ-----------------VEHALKLFDEMQHS----D-VAAET 125 (260)
Q Consensus 73 ~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~----~-~~~~~ 125 (260)
+|...+++..+.. ......++..+...+...|+ +++|...+++..+. + .+...
T Consensus 144 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~ 223 (411)
T 4a1s_A 144 EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999876541 11134577788889999999 99999998876442 1 12234
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-----Cch
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLRVLKCE-LG----IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM-----PNV 195 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 195 (260)
.++..+...+...|++++|...+++....... .+ ...+..+...|...|++++|...+++....... ...
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 57788889999999999999999887653211 11 237788899999999999999999887653211 114
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 196 VTYNIMIHGFCNDGQMDKAHDLFLDMEAK----GV-APNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
.++..+...+...|++++|...+++..+. +. .....++..+..++...|++++|.+.+++..+
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 67888899999999999999999988753 11 11245778888999999999999999998764
No 54
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=5.9e-14 Score=111.20 Aligned_cols=236 Identities=12% Similarity=0.043 Sum_probs=127.7
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh----cCChHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCL----TGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK----TKDVEE 73 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 73 (260)
++|.+.|+...+.| ++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++
T Consensus 60 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 60 TQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34556666655543 34455556666665 666666666666665544 44455555555555 556666
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHhc----cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh----cCcHHHHH
Q 044047 74 SLNLYSEMLSKGIRPTVVTYNTLFHGLFE----IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK----NGYIVEAA 145 (260)
Q Consensus 74 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 145 (260)
|+..|++..+.| +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|.
T Consensus 134 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 134 SVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 666666665543 34445555555554 556666666666655543 34455555555555 56666666
Q ss_pred HHHHHhhhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHh----cCChHHHHHH
Q 044047 146 ELFRTLRVLKCELGIEAYSCLIDGLCK----IGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCN----DGQMDKAHDL 217 (260)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 217 (260)
++|+.....+ ++..+..+...|.. .+++++|..+++...+.+ +...+..+...+.. .+++++|...
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 6666555432 33444455555543 455555555555555442 33344444444444 5555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhc-----CchhHHHHHHHHHhh
Q 044047 218 FLDMEAKGVAPNCVTFNTLMLGCIRN-----NETSKVVELLHRMDE 258 (260)
Q Consensus 218 ~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~ 258 (260)
|++..+.| +...+..+...|... +++++|..++++..+
T Consensus 282 ~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 282 YRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 55555432 333444444545444 555555555555443
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.73 E-value=2.2e-16 Score=118.55 Aligned_cols=256 Identities=14% Similarity=0.090 Sum_probs=195.5
Q ss_pred hhHHHHHHHHHHcCCCcc----HHHHHHHHHHHhccCCHHHHHHHHHHHhhc----C-CCCchhhHHHHHHHHHhcCChH
Q 044047 2 DEASRLLDLMIQRGVRPN----AFVYSTLIDGFCLTGEIDRARELFVSMDIN----G-CMHNVVTYNTLINGYCKTKDVE 72 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~ 72 (260)
++|.+.|++..+.+.. + ...+..+...+...|++++|...+++.... + .+....++..+...+...|+++
T Consensus 22 ~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 100 (338)
T 3ro2_A 22 RAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 100 (338)
T ss_dssp HHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH
Confidence 6789999999887532 3 467888999999999999999999887543 2 1223567888999999999999
Q ss_pred HHHHHHHHHHhcCCC-CC----ccchHHHHHHHhcccc--------------------HHHHHHHHHHHhhc----C-CC
Q 044047 73 ESLNLYSEMLSKGIR-PT----VVTYNTLFHGLFEIHQ--------------------VEHALKLFDEMQHS----D-VA 122 (260)
Q Consensus 73 ~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~-~~ 122 (260)
+|...+++..+.... ++ ..++..+...+...|+ +++|...+++.... + .+
T Consensus 101 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~ 180 (338)
T 3ro2_A 101 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA 180 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 999999987654211 11 3377788889999999 99999998876432 1 12
Q ss_pred cchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC-----CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-Cc--
Q 044047 123 AETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC-----ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM-PN-- 194 (260)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-- 194 (260)
.....+..+...+...|++++|...+++...... ......+..+...+...|++++|...+++....... ++
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 260 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh
Confidence 2345778888999999999999999988764321 112337788899999999999999999887643111 11
Q ss_pred --hhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 195 --VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK----GV-APNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 195 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
..++..+...+...|++++|...+++..+. +. .....++..+..++...|++++|...+++..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 457788889999999999999999988653 11 11244777889999999999999999998865
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=3.4e-16 Score=120.77 Aligned_cols=256 Identities=14% Similarity=0.075 Sum_probs=195.4
Q ss_pred hhHHHHHHHHHHcCCCcc----HHHHHHHHHHHhccCCHHHHHHHHHHHhhc----CC-CCchhhHHHHHHHHHhcCChH
Q 044047 2 DEASRLLDLMIQRGVRPN----AFVYSTLIDGFCLTGEIDRARELFVSMDIN----GC-MHNVVTYNTLINGYCKTKDVE 72 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~ 72 (260)
++|...|++..+.+.. + ..++..+...+...|++++|...+++.... +- +....++..+...+...|+++
T Consensus 26 ~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 104 (406)
T 3sf4_A 26 RAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 104 (406)
T ss_dssp HHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH
Confidence 6789999999887532 3 467888999999999999999999887543 21 223567888899999999999
Q ss_pred HHHHHHHHHHhcCCC-CC----ccchHHHHHHHhcccc--------------------HHHHHHHHHHHhhc----C-CC
Q 044047 73 ESLNLYSEMLSKGIR-PT----VVTYNTLFHGLFEIHQ--------------------VEHALKLFDEMQHS----D-VA 122 (260)
Q Consensus 73 ~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~-~~ 122 (260)
+|...+++..+.... ++ ..++..+...+...|+ +++|...+++.... + .+
T Consensus 105 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 184 (406)
T 3sf4_A 105 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRA 184 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcH
Confidence 999999988654111 11 3477888889999999 99999998876542 1 12
Q ss_pred cchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC-Cc----CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC----CCC
Q 044047 123 AETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC-EL----GIEAYSCLIDGLCKIGKLETAWELFQSLPRVG----LMP 193 (260)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~ 193 (260)
....++..+...+...|++++|...+++...... .+ ...++..+...+...|++++|...+++..... ..+
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 264 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence 2345788889999999999999999988764321 11 13378888999999999999999998876431 111
Q ss_pred -chhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 194 -NVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK----GVAP-NCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 194 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
...++..+...+...|++++|...+++..+. +..+ ...++..+..++...|++++|.+.+++..+
T Consensus 265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1457888899999999999999999988753 1111 155778889999999999999999988654
No 57
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=6.3e-17 Score=123.02 Aligned_cols=206 Identities=11% Similarity=0.066 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|++.|.+ .+|+..|..++..+...|++++|..+++...+. .+++.+.+.++.+|.+.|+++++.++++
T Consensus 49 ~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-- 118 (449)
T 1b89_A 49 KEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-- 118 (449)
T ss_dssp --------------------------------------------------------------------CHHHHTTTTT--
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--
Confidence 456666643 357889999999999999999999988776664 4567889999999999999999998884
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHH
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIE 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (260)
.|+..+|..++..|...|.+++|..+|..+ ..|..++.++.+.|++++|.+.++++ .++.
T Consensus 119 -----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~ 178 (449)
T 1b89_A 119 -----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 178 (449)
T ss_dssp -----CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHH
T ss_pred -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCch
Confidence 367789999999999999999999999976 47999999999999999999999987 3788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCI 241 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 241 (260)
+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|..+++...... +-....|+-+..+|+
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 99999999999999999976655433 233345578899999999999999999988654 445677777766666
Q ss_pred hc
Q 044047 242 RN 243 (260)
Q Consensus 242 ~~ 243 (260)
+-
T Consensus 253 ky 254 (449)
T 1b89_A 253 KF 254 (449)
T ss_dssp TT
T ss_pred hc
Confidence 53
No 58
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=1.9e-13 Score=108.36 Aligned_cols=240 Identities=13% Similarity=0.057 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh----cCChHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCL----TGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK----TKDVEE 73 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 73 (260)
++|.+.|++..+.| ++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++
T Consensus 96 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 96 AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34555566555544 34444555555555 556666666666655543 34445555555554 455666
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHhc----cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh----cCcHHHHH
Q 044047 74 SLNLYSEMLSKGIRPTVVTYNTLFHGLFE----IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK----NGYIVEAA 145 (260)
Q Consensus 74 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 145 (260)
|++.|++..+.| +...+..+...|.. .++.++|..+|++..+.+ +...+..+...|.. .+++++|.
T Consensus 170 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 170 AREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 666666555542 34444455555544 455555555555554433 22333344444443 44445555
Q ss_pred HHHHHhhhcCC---------------------------------CcCHHHHHHHHHHHHhc-----CCHHHHHHHHHhhh
Q 044047 146 ELFRTLRVLKC---------------------------------ELGIEAYSCLIDGLCKI-----GKLETAWELFQSLP 187 (260)
Q Consensus 146 ~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~ 187 (260)
.+++.....+. .-++..+..+...|... +++++|...++...
T Consensus 244 ~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 244 VLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 55444443220 01233344444444443 45555555555554
Q ss_pred hCCCCCchhhHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCchhHHHHHHHHHhhc
Q 044047 188 RVGLMPNVVTYNIMIHGFCNDG---QMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIR----NNETSKVVELLHRMDER 259 (260)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~ 259 (260)
+.+ +...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|.+++++..+.
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 432 2334444444444433 4555555555555542 34455555555555 55666666666555443
No 59
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.69 E-value=9.6e-15 Score=112.09 Aligned_cols=231 Identities=10% Similarity=-0.012 Sum_probs=177.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhc----CCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CccchH
Q 044047 26 LIDGFCLTGEIDRARELFVSMDIN----GCMH-NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRP------TVVTYN 94 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 94 (260)
....+...|++++|...+++..+. +-++ ...++..+..++...|+++.|+..+++..+.-... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 667778899999999999998763 2111 35678999999999999999999999987642111 135678
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhcC-----CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc----CC-CcCHHHHH
Q 044047 95 TLFHGLFEIHQVEHALKLFDEMQHSD-----VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL----KC-ELGIEAYS 164 (260)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 164 (260)
.+...|...|++++|...+++..+.. .+....++..+..+|...|++++|...+++.... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 88899999999999999999876431 1112347888999999999999999999988762 22 44467889
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhCC----CCCchhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCChhhHHHHH
Q 044047 165 CLIDGLCKIGKLETAWELFQSLPRVG----LMPNVVTYNIMIHGFCNDGQ---MDKAHDLFLDMEAKGVAPNCVTFNTLM 237 (260)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~ 237 (260)
.+...+...|++++|...+++..+.. -+.....+..+...+...|+ +++|..++++... .+.....+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 99999999999999999999876531 11122345678888888998 7777777776521 122345677889
Q ss_pred HHHHhcCchhHHHHHHHHHhh
Q 044047 238 LGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~m~~ 258 (260)
..|...|++++|...+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 60
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=9.3e-15 Score=115.13 Aligned_cols=253 Identities=13% Similarity=-0.042 Sum_probs=153.6
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHH---hccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh----cCChHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGF---CLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK----TKDVEES 74 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 74 (260)
++|++.|++..+.. |.++..+..+..++ ...++.++|++.+++..+.+ |.+..++..+...+.. .+++++|
T Consensus 155 ~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a 232 (472)
T 4g1t_A 155 ERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEG 232 (472)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHH
Confidence 46777777777654 23455554444443 33456666777777766654 4455555555544443 3456777
Q ss_pred HHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc----------------
Q 044047 75 LNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN---------------- 138 (260)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------- 138 (260)
.+++++....... +..++..+...+...|++++|...+++..+.. |.+..++..+..+|...
T Consensus 233 ~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 233 EKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7777777665433 56667777778888888888888888877664 44555666665554321
Q ss_pred ---CcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCch--hhHHHHHH-HHHhcCChH
Q 044047 139 ---GYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNV--VTYNIMIH-GFCNDGQMD 212 (260)
Q Consensus 139 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~ 212 (260)
+.++.|...++...... +.+...+..+...+...|++++|...|++..+....+.. ..+..+.. .....|+++
T Consensus 311 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCED 389 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHH
Confidence 23455666666666554 445566778888899999999999999988876433221 12223322 234678889
Q ss_pred HHHHHHHHHHhCC-----------------------CCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 213 KAHDLFLDMEAKG-----------------------VAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 213 ~a~~~~~~~~~~~-----------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
+|+..|.+..+.. -+.+..+|..+..++...|++++|++.|++..+.
T Consensus 390 ~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 390 KAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9988888776531 1345678888999999999999999999988764
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=1.6e-15 Score=117.41 Aligned_cols=239 Identities=14% Similarity=0.085 Sum_probs=185.3
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch----hhHHHHHHHHHhcCChHHHHHHHHHHHhc----C-CCCC
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV----VTYNTLINGYCKTKDVEESLNLYSEMLSK----G-IRPT 89 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~ 89 (260)
....+..+...+...|++++|...|+++.+.+ +.+. .++..+...+...|++++|+..+++..+. + ....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34455667788899999999999999998875 3333 57889999999999999999999988653 1 1123
Q ss_pred ccchHHHHHHHhccccHHHHHHHHHHHhhcC-----CCcchhhHHHHHHHHHhcCc-----------------HHHHHHH
Q 044047 90 VVTYNTLFHGLFEIHQVEHALKLFDEMQHSD-----VAAETSTYNTFIDGLCKNGY-----------------IVEAAEL 147 (260)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~ 147 (260)
..++..+...+...|++++|...+++..+.. .+....++..+...|...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 5677888899999999999999999876531 12345578888999999999 9999999
Q ss_pred HHHhhhc----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-Cc----hhhHHHHHHHHHhcCChHHHHHH
Q 044047 148 FRTLRVL----KC-ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM-PN----VVTYNIMIHGFCNDGQMDKAHDL 217 (260)
Q Consensus 148 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~ 217 (260)
+++.... +. +.....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8876542 11 223457888899999999999999999987654211 11 23788899999999999999999
Q ss_pred HHHHHhCC--CC---CChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 218 FLDMEAKG--VA---PNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 218 ~~~~~~~~--~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+++..+.. .. ....++..+..++...|++++|...+++..+
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99887531 10 1256778889999999999999999998754
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.68 E-value=7.3e-15 Score=120.44 Aligned_cols=168 Identities=19% Similarity=0.111 Sum_probs=151.9
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHH
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTL 96 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 96 (260)
|-++..|+.+...+.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+.... +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4467899999999999999999999999998876 667899999999999999999999999999987544 67889999
Q ss_pred HHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH
Q 044047 97 FHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL 176 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (260)
..++...|++++|++.|++..+.. +.+...+..+..+|...|++++|+..|++..+.. +-+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 999999999999999999998876 6678899999999999999999999999998876 66788999999999999999
Q ss_pred HHHHHHHHhhhh
Q 044047 177 ETAWELFQSLPR 188 (260)
Q Consensus 177 ~~a~~~~~~~~~ 188 (260)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=2.7e-14 Score=97.90 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4456666677777777777777777766553 44566667777777777777777777777666532 245555666666
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETA 179 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 179 (260)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666665553 3445555556666666666666666666655443 33455555555566666666666
Q ss_pred HHHHHhhhh
Q 044047 180 WELFQSLPR 188 (260)
Q Consensus 180 ~~~~~~~~~ 188 (260)
...++.+.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555544
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=6.7e-15 Score=113.47 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=186.2
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHN----VVTYNTLINGYCKTKDVEESLNLYSEMLSK----GIRP 88 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 88 (260)
.+....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4456677888999999999999999999998874 333 357888999999999999999999987543 1111
Q ss_pred -CccchHHHHHHHhccccHHHHHHHHHHHhhcC-----CCcchhhHHHHHHHHHhcCc--------------------HH
Q 044047 89 -TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSD-----VAAETSTYNTFIDGLCKNGY--------------------IV 142 (260)
Q Consensus 89 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~--------------------~~ 142 (260)
...++..+...+...|++++|...+++..+.. ......++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 24567788889999999999999999876531 11124478888899999999 99
Q ss_pred HHHHHHHHhhhc----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-Cc----hhhHHHHHHHHHhcCChH
Q 044047 143 EAAELFRTLRVL----K-CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM-PN----VVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 143 ~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 212 (260)
+|...++..... + .+....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876542 1 1222457888899999999999999999887653111 11 347888999999999999
Q ss_pred HHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 213 KAHDLFLDMEAK----GVAP-NCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 213 ~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+|...+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999988753 1111 156778889999999999999999988754
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=2e-14 Score=117.88 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=150.5
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHH
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTF 131 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (260)
|.+..+|+.+...+.+.|++++|++.|++..+.... +..++..+..+|.+.|++++|+..|++..+.. +.+...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 446788999999999999999999999999987544 57889999999999999999999999998876 6678899999
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCCh
Q 044047 132 IDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQM 211 (260)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (260)
..++...|++++|++.|++..+.. +-+...|+.+..+|...|++++|...|++..+... -+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccH
Confidence 999999999999999999998876 66788999999999999999999999999988642 2578899999999999999
Q ss_pred HHHHHHHHHHHh
Q 044047 212 DKAHDLFLDMEA 223 (260)
Q Consensus 212 ~~a~~~~~~~~~ 223 (260)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.65 E-value=1.2e-14 Score=109.09 Aligned_cols=239 Identities=12% Similarity=0.096 Sum_probs=182.5
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC-CC
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHN----VVTYNTLINGYCKTKDVEESLNLYSEMLSK----GIR-PT 89 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 89 (260)
+...+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|++++|...+++..+. +.. ..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 34556667888899999999999999998874 333 467888999999999999999999987543 111 12
Q ss_pred ccchHHHHHHHhccccHHHHHHHHHHHhhcCC-----CcchhhHHHHHHHHHhcCc--------------------HHHH
Q 044047 90 VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDV-----AAETSTYNTFIDGLCKNGY--------------------IVEA 144 (260)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a 144 (260)
..++..+...+...|++++|...+++..+... .....++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 55677888999999999999999998754311 1113477888899999999 9999
Q ss_pred HHHHHHhhhc----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-Cc----hhhHHHHHHHHHhcCChHHH
Q 044047 145 AELFRTLRVL----K-CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM-PN----VVTYNIMIHGFCNDGQMDKA 214 (260)
Q Consensus 145 ~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a 214 (260)
...+++.... + .+.....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998876532 1 1222457788899999999999999999887653111 11 34788889999999999999
Q ss_pred HHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 215 HDLFLDMEAK----GVAP-NCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 215 ~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
...+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999988753 1111 155777888999999999999999988754
No 67
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=3.7e-13 Score=106.01 Aligned_cols=184 Identities=9% Similarity=-0.069 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHc--------CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhc-----C--CCCchhhHHHHHHHHH
Q 044047 2 DEASRLLDLMIQR--------GVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDIN-----G--CMHNVVTYNTLINGYC 66 (260)
Q Consensus 2 ~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~ 66 (260)
++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+. + ......++.....++.
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~ 147 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL 147 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHH
Confidence 5677777665432 12334678999999999999999999999887542 1 0123456666655555
Q ss_pred hc--CChHHHHHHHHHHHhcCCCCCccchHHHHHHH---hccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh----
Q 044047 67 KT--KDVEESLNLYSEMLSKGIRPTVVTYNTLFHGL---FEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK---- 137 (260)
Q Consensus 67 ~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 137 (260)
.. +++++|+..|++..+..+. ++..+..+..++ ...++.++|+..+++..+.+ +.+...+..+...+..
T Consensus 148 ~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~ 225 (472)
T 4g1t_A 148 KCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREE 225 (472)
T ss_dssp HHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC--
T ss_pred HHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhh
Confidence 54 4689999999998876432 344444443332 23344555666666555543 3344444444333332
Q ss_pred cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 138 NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
.+++++|.+.+++..... +.+...+..+...|...|++++|...++++.+
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 234455566665555443 44455555566666666666666665555544
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.64 E-value=1.3e-13 Score=98.09 Aligned_cols=201 Identities=12% Similarity=0.021 Sum_probs=157.9
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
.++..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++..+.... +..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678888999999999999999999999988763378888888999999999999999999999987443 677888999
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcch-------hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc--CHHHHHHHHH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAET-------STYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL--GIEAYSCLID 168 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 168 (260)
..+...|++++|+..+++..+.. |.+. ..+..+...+...|++++|+..+++..... +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 99999999999999999998865 4445 457888888999999999999999998764 44 4677888888
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 044047 169 GLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCV 231 (260)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 231 (260)
+|...| ...++.+...+. .+...|.... ....+.+++|...+++..+. .|+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 876554 344555555432 2344444333 33467789999999999985 45443
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.64 E-value=7.5e-14 Score=95.65 Aligned_cols=166 Identities=11% Similarity=0.034 Sum_probs=123.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45566777778888888888888887766533 256667777778888888888888888877664 4566777777788
Q ss_pred HHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHH
Q 044047 135 LCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKA 214 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 214 (260)
+...|++++|...++.+.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888777654 5566777777788888888888888888777654 23466777777778888888888
Q ss_pred HHHHHHHHhC
Q 044047 215 HDLFLDMEAK 224 (260)
Q Consensus 215 ~~~~~~~~~~ 224 (260)
...++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888777653
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.63 E-value=1.9e-13 Score=104.69 Aligned_cols=232 Identities=10% Similarity=-0.017 Sum_probs=175.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcC--C---CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-C-----Cccc
Q 044047 24 STLIDGFCLTGEIDRARELFVSMDING--C---MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIR-P-----TVVT 92 (260)
Q Consensus 24 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~ 92 (260)
......+...|++++|...|++..+.. . +....++..+...|...|+++.|+..+++..+.... + ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 345566778999999999999986541 1 123567888999999999999999999988753111 1 2456
Q ss_pred hHHHHHHHhccccHHHHHHHHHHHhhc----CCC-cchhhHHHHHHHHHhcCcHHHHHHHHHHhhh-----cCCCcCHHH
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDEMQHS----DVA-AETSTYNTFIDGLCKNGYIVEAAELFRTLRV-----LKCELGIEA 162 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 162 (260)
++.+...|...|++++|...+++..+. +.+ ....++..+..+|...|++++|...+++... .. +....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 778899999999999999999987653 111 2245778899999999999999999998876 43 334778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCC----CCchhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCChhhHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGL----MPNVVTYNIMIHGFCNDGQ---MDKAHDLFLDMEAKGVAPNCVTFNT 235 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~ 235 (260)
+..+...+.+.|++++|...+++..+... +.....+..+...+...++ +.+|...+++... .+.....+..
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~ 341 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHH
Confidence 89999999999999999999998876421 1123456666677777888 7777777766221 1223456678
Q ss_pred HHHHHHhcCchhHHHHHHHHHhh
Q 044047 236 LMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 236 l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+...|...|++++|...+++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 71
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=6.3e-13 Score=106.32 Aligned_cols=217 Identities=11% Similarity=0.019 Sum_probs=165.9
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHHhhcCCCCchhhHHHHHHHHHhc
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCL-------TGEID-------RARELFVSMDINGCMHNVVTYNTLINGYCKT 68 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 68 (260)
+|..+|++..... +.++..|..++..+.+ .|+++ +|..+|+...+.-.|.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4566777777763 4577888888888775 68876 8999999888632255788899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCc--cchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH-HHhcCcHHHHH
Q 044047 69 KDVEESLNLYSEMLSKGIRPTV--VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG-LCKNGYIVEAA 145 (260)
Q Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~ 145 (260)
|++++|..+|+++.+. .|+. ..|..++..+.+.|+.++|..+|++..+.. +.+...+...+.. +...|++++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999885 3432 478888888888999999999999988753 3333333332222 34589999999
Q ss_pred HHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC-CCc--hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 146 ELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGL-MPN--VVTYNIMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
.+|+...+.. +.++..|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..++.++.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887764 55688888899999999999999999999887642 222 3477777887888899999999998887
Q ss_pred hC
Q 044047 223 AK 224 (260)
Q Consensus 223 ~~ 224 (260)
+.
T Consensus 491 ~~ 492 (530)
T 2ooe_A 491 TA 492 (530)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.62 E-value=2.5e-13 Score=96.63 Aligned_cols=194 Identities=14% Similarity=0.026 Sum_probs=153.5
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 044047 53 HNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFI 132 (260)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (260)
.++..+......+...|++++|+..|++..+....++...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46688889999999999999999999999987654677788889999999999999999999998876 55778899999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc---hhhHHHHH
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLKCELGI-------EAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN---VVTYNIMI 202 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 202 (260)
.++...|++++|...+++..... +.+. ..|..+...+...|++++|...++++.+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998765 4455 55888888999999999999999999886 344 46777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 203 HGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 203 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
.++...| ...++++...+ ..+...+.... ....+.+++|...+++..+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 7776554 34455555542 22344444333 3445678888888887765
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=7.7e-13 Score=101.08 Aligned_cols=257 Identities=11% Similarity=0.021 Sum_probs=182.5
Q ss_pred hhHHHHHHHHHHcCCCccH----HHHHHHHHHHhccCCHHHHHHHHHHHhhcCC---CC--chhhHHHHHHHHHhcCChH
Q 044047 2 DEASRLLDLMIQRGVRPNA----FVYSTLIDGFCLTGEIDRARELFVSMDINGC---MH--NVVTYNTLINGYCKTKDVE 72 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~ 72 (260)
++|.+.+++........+. ..++.+...+...|++++|...+++...... .+ ...++..+...+...|+++
T Consensus 31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 110 (373)
T 1hz4_A 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 110 (373)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHH
Confidence 5678888887775422222 2566777888899999999999998765310 11 1234667788899999999
Q ss_pred HHHHHHHHHHhc----CCC--C-CccchHHHHHHHhccccHHHHHHHHHHHhhcCCC----cchhhHHHHHHHHHhcCcH
Q 044047 73 ESLNLYSEMLSK----GIR--P-TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVA----AETSTYNTFIDGLCKNGYI 141 (260)
Q Consensus 73 ~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 141 (260)
+|...+++..+. +.. | ....+..+...+...|++++|...+++....... .....+..+...+...|++
T Consensus 111 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 190 (373)
T 1hz4_A 111 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL 190 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH
Confidence 999999988653 221 2 2345566788889999999999999987654211 1234677888889999999
Q ss_pred HHHHHHHHHhhhcCCCcC--HHHHH----HHHHHHHhcCCHHHHHHHHHhhhhCCCCCc---hhhHHHHHHHHHhcCChH
Q 044047 142 VEAAELFRTLRVLKCELG--IEAYS----CLIDGLCKIGKLETAWELFQSLPRVGLMPN---VVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 212 (260)
++|...+++.......++ ..... ..+..+...|++++|...++........++ ...+..+...+...|+++
T Consensus 191 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 270 (373)
T 1hz4_A 191 DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 270 (373)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 999999998765421211 12111 233457799999999999998876432211 235667788899999999
Q ss_pred HHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 213 KAHDLFLDMEAK----GVAPNC-VTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 213 ~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+|...+++.... |..++. ..+..+..++...|+.++|...+++..+
T Consensus 271 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 271 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999988643 222222 3666777889999999999999988654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=9.6e-15 Score=108.56 Aligned_cols=221 Identities=13% Similarity=0.007 Sum_probs=156.5
Q ss_pred hhHHHHHHHHHHc-------CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhc------C-CCCchhhHHHHHHHHHh
Q 044047 2 DEASRLLDLMIQR-------GVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDIN------G-CMHNVVTYNTLINGYCK 67 (260)
Q Consensus 2 ~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~ 67 (260)
++|..+++++.+. ..+....++..+...+...|++++|...++++... + .+....++..+...+..
T Consensus 44 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (311)
T 3nf1_A 44 EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 5677888777763 33456778999999999999999999999988654 2 23456788899999999
Q ss_pred cCChHHHHHHHHHHHhc------CCCC-CccchHHHHHHHhccccHHHHHHHHHHHhhc------C-CCcchhhHHHHHH
Q 044047 68 TKDVEESLNLYSEMLSK------GIRP-TVVTYNTLFHGLFEIHQVEHALKLFDEMQHS------D-VAAETSTYNTFID 133 (260)
Q Consensus 68 ~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~ 133 (260)
.|++++|...+++..+. +..| ...++..+...+...|++++|..++++..+. + .+....++..+..
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999998764 2222 3456788889999999999999999998664 1 2334567888999
Q ss_pred HHHhcCcHHHHHHHHHHhhhcC-------CCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHH
Q 044047 134 GLCKNGYIVEAAELFRTLRVLK-------CELG-------IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYN 199 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (260)
++...|++++|...++++.... ..+. ...+......+...+.+.++...+....... +.+..++.
T Consensus 204 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 282 (311)
T 3nf1_A 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLK 282 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHH
Confidence 9999999999999999887531 1111 1122333334445556666666666665532 23467888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 044047 200 IMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 200 ~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
.+..+|...|++++|...+++..+
T Consensus 283 ~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 283 NLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999998876
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.61 E-value=3.2e-14 Score=104.18 Aligned_cols=226 Identities=12% Similarity=-0.017 Sum_probs=141.4
Q ss_pred ccCCHHHHHHHHHHHhh-------cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc------CCC-CCccchHHHH
Q 044047 32 LTGEIDRARELFVSMDI-------NGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK------GIR-PTVVTYNTLF 97 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l~ 97 (260)
..|++++|...+++..+ .+.+....++..+...+...|++++|+..+++..+. +-. ....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44555555555555433 222334566777778888888888888888777654 111 2345677777
Q ss_pred HHHhccccHHHHHHHHHHHhhc------C-CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc------C-CCcCHHHH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHS------D-VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL------K-CELGIEAY 163 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~ 163 (260)
..+...|++++|...+++.... . .+....++..+...+...|++++|...+++.... + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7888888888888888776543 1 1334567777888888888888888888877654 1 12335577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhC-------CCCCc-hhhHHHHHHHHHhcCChHHHHH------HHHHHHhCCCCCC
Q 044047 164 SCLIDGLCKIGKLETAWELFQSLPRV-------GLMPN-VVTYNIMIHGFCNDGQMDKAHD------LFLDMEAKGVAPN 229 (260)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~------~~~~~~~~~~~p~ 229 (260)
..+...+...|++++|...++++.+. ...+. ...+..+.......+....+.. .+..... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 78888888888888888888877653 11122 2334444434333333322222 2221111 11223
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 230 CVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 230 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
..++..+..+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677888999999999999999988765
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.61 E-value=1.9e-14 Score=105.34 Aligned_cols=221 Identities=13% Similarity=-0.007 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhc------C-CCCchhhHHHHHHHHHhcCChHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDIN------G-CMHNVVTYNTLINGYCKTKDVEESL 75 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~ 75 (260)
+|+++++.......+....++..+...+...|++++|...++++.+. + .+....++..+..++...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 34444444443343456788999999999999999999999988654 2 1335678899999999999999999
Q ss_pred HHHHHHHhcC-----C--CCCccchHHHHHHHhccccHHHHHHHHHHHhhc------C-CCcchhhHHHHHHHHHhcCcH
Q 044047 76 NLYSEMLSKG-----I--RPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS------D-VAAETSTYNTFIDGLCKNGYI 141 (260)
Q Consensus 76 ~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~ 141 (260)
..+++..+.. . +....++..+...+...|++++|...+++..+. + .+....++..+..++...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 9999987641 1 223567888999999999999999999998764 1 233466788899999999999
Q ss_pred HHHHHHHHHhhhcC-------C-CcCHHHHHHHHHHHHhcCC------HHHHHHHHHhhhhCCCCCchhhHHHHHHHHHh
Q 044047 142 VEAAELFRTLRVLK-------C-ELGIEAYSCLIDGLCKIGK------LETAWELFQSLPRVGLMPNVVTYNIMIHGFCN 207 (260)
Q Consensus 142 ~~a~~~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (260)
++|...+++..... . ......+..+...+...+. +..+...++..... .+....++..+...|..
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999887531 1 1122233334444433333 23333333333221 12235678889999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 044047 208 DGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 208 ~g~~~~a~~~~~~~~~~ 224 (260)
.|++++|..++++..+.
T Consensus 265 ~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 265 QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988763
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.61 E-value=1.4e-13 Score=101.62 Aligned_cols=234 Identities=10% Similarity=0.030 Sum_probs=140.2
Q ss_pred ChhHHHHHHHHHHcCCCccHHHHHHHHHHHhc--cCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 044047 1 MDEASRLLDLMIQRGVRPNAFVYSTLIDGFCL--TGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLY 78 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 78 (260)
+.+|.+++.+..+. .+++...| .++ .. .+++++|...|+.. ...|...|++++|...|
T Consensus 1 ~~~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 1 ISDPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCCHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred CCcHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 45778888877776 23322222 221 11 12477777777665 33456677778777777
Q ss_pred HHHHhc----CCCCC-ccchHHHHHHHhccccHHHHHHHHHHHhhcCC---Cc--chhhHHHHHHHHHhc-CcHHHHHHH
Q 044047 79 SEMLSK----GIRPT-VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDV---AA--ETSTYNTFIDGLCKN-GYIVEAAEL 147 (260)
Q Consensus 79 ~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~ 147 (260)
.+..+. |..+. ..+|+.+..+|...|++++|+..+++..+... .+ ...++..+..+|... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 776543 21111 45677777777777888888777777654210 11 134667777777775 888888888
Q ss_pred HHHhhhcCCCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCch------hhHHHHHHHHHhcCChHHHHH
Q 044047 148 FRTLRVLKCEL-G----IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNV------VTYNIMIHGFCNDGQMDKAHD 216 (260)
Q Consensus 148 ~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~ 216 (260)
+++........ + ..++..+...+...|++++|...+++.......... ..|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87766432111 1 345677777888888888888888877765432211 145666777777888888888
Q ss_pred HHHHHHhCCCCCCh------hhHHHHHHHHH--hcCchhHHHHHHHHH
Q 044047 217 LFLDMEAKGVAPNC------VTFNTLMLGCI--RNNETSKVVELLHRM 256 (260)
Q Consensus 217 ~~~~~~~~~~~p~~------~~~~~l~~~~~--~~~~~~~a~~~~~~m 256 (260)
.|++..+. .|+. ..+..++.++. ..+++++|+..|+++
T Consensus 221 ~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 221 TLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 88777653 2321 12334455553 345577777766554
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=1.7e-12 Score=103.88 Aligned_cols=218 Identities=10% Similarity=0.051 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhhcCCCCchhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHhcCCCCCccchHHHHHHHhc
Q 044047 37 DRARELFVSMDINGCMHNVVTYNTLINGYCK-------TKDVE-------ESLNLYSEMLSKGIRPTVVTYNTLFHGLFE 102 (260)
Q Consensus 37 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (260)
+++..+|+++.... |.+...|..++..+.. .|+++ +|..++++..+.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46778888887764 6678899999888876 79987 899999999863123357788899999999
Q ss_pred cccHHHHHHHHHHHhhcCCCcch-hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHH-HHhcCCHHHHH
Q 044047 103 IHQVEHALKLFDEMQHSDVAAET-STYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDG-LCKIGKLETAW 180 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~ 180 (260)
.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|..+|+...... +.+...+...+.. +...|+.++|.
T Consensus 334 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 999999999999998853 2233 588899999999999999999999998764 3334444333322 34689999999
Q ss_pred HHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 181 ELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKG-VAPN--CVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
.+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+.+++.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988763 2357889999999999999999999999999863 2332 3477777888888999999999998876
Q ss_pred h
Q 044047 258 E 258 (260)
Q Consensus 258 ~ 258 (260)
+
T Consensus 491 ~ 491 (530)
T 2ooe_A 491 T 491 (530)
T ss_dssp H
T ss_pred H
Confidence 4
No 79
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=2.3e-12 Score=109.76 Aligned_cols=204 Identities=11% Similarity=0.137 Sum_probs=142.9
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
++.+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|++++|.+.+...++.. +++...+.++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 4667778888888888888888887553 366777778888888888888888887776653 33334445777
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (260)
+|++.+++++...+. + .++...+..+...|...|++++|..+|... ..|..++..+.+.|+++.
T Consensus 1176 aYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred HHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHH
Confidence 788887777533332 1 334556667888888888888888888764 367788888888888888
Q ss_pred HHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 179 AWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
|.+.+++.. +..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...
T Consensus 1240 AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1240 AVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888887663 446666666666666666666665443 22355566677777777788877777776553
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=1.9e-13 Score=104.90 Aligned_cols=219 Identities=11% Similarity=0.033 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHHc----CCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHhhc----C--CCCchhhHHHHHHHHHhcCC
Q 044047 2 DEASRLLDLMIQR----GVRP-NAFVYSTLIDGFCLTGEIDRARELFVSMDIN----G--CMHNVVTYNTLINGYCKTKD 70 (260)
Q Consensus 2 ~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~ 70 (260)
++|.+.+++..+. +-++ ...++..+...+...|++++|...+++..+. + .+....+++.+..+|...|+
T Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 199 (383)
T 3ulq_A 120 LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ 199 (383)
T ss_dssp HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcC
Confidence 5788888888764 2122 4578899999999999999999999988653 1 11234578889999999999
Q ss_pred hHHHHHHHHHHHhcCCCC-C----ccchHHHHHHHhccccHHHHHHHHHHHhh-----cCCCcchhhHHHHHHHHHhcCc
Q 044047 71 VEESLNLYSEMLSKGIRP-T----VVTYNTLFHGLFEIHQVEHALKLFDEMQH-----SDVAAETSTYNTFIDGLCKNGY 140 (260)
Q Consensus 71 ~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~ 140 (260)
+++|+..+++..+..... + ..++..+...|...|++++|...+++..+ ...+....++..+..++...|+
T Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (383)
T 3ulq_A 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC
Confidence 999999999887542111 1 24788899999999999999999999876 2224456778899999999999
Q ss_pred HHHHHHHHHHhhhcC----CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChH
Q 044047 141 IVEAAELFRTLRVLK----CELGIEAYSCLIDGLCKIGK---LETAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 141 ~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 212 (260)
+++|...+++..... .+.....+..+...+...|+ +++|..+++.... .|+ ...+..+...|...|+++
T Consensus 280 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~---~~~~~~~~~~la~~y~~~g~~~ 356 (383)
T 3ulq_A 280 IDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML---YADLEDFAIDVAKYYHERKNFQ 356 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHHHHHCCCHH
Confidence 999999999876432 12223346778888889999 7778777776632 233 457788999999999999
Q ss_pred HHHHHHHHHHh
Q 044047 213 KAHDLFLDMEA 223 (260)
Q Consensus 213 ~a~~~~~~~~~ 223 (260)
+|...+++..+
T Consensus 357 ~A~~~~~~al~ 367 (383)
T 3ulq_A 357 KASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=1.1e-11 Score=94.74 Aligned_cols=237 Identities=12% Similarity=-0.015 Sum_probs=169.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch----hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----ccc
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV----VTYNTLINGYCKTKDVEESLNLYSEMLSKGIR-PT----VVT 92 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 92 (260)
........+...|++++|...+++........+. .+++.+...+...|++++|...+++....... .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444556677899999999999998765412222 24667778888999999999999988753211 11 223
Q ss_pred hHHHHHHHhccccHHHHHHHHHHHhhc----CCC--c-chhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC----cCHH
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDEMQHS----DVA--A-ETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE----LGIE 161 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 161 (260)
+..+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566778889999999999999987543 211 2 3445667888899999999999999987654311 1345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCch-hhHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCC---Chhh
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNV-VTYN-----IMIHGFCNDGQMDKAHDLFLDMEAKGVAP---NCVT 232 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~ 232 (260)
.+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6788889999999999999999987654211111 1122 23344778999999999999887643211 1234
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 233 FNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+..+...+...|++++|...+++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778899999999999999988653
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.51 E-value=3e-12 Score=92.92 Aligned_cols=212 Identities=11% Similarity=-0.008 Sum_probs=140.1
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-C-Ccc
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHN---VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIR-P-TVV 91 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~ 91 (260)
+.++..+..+...+.+.|++++|...|+.+.+.. |.+ ...+..+..++...|++++|+..|++..+..+. | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456777778888999999999999999998764 334 677888889999999999999999999886332 1 234
Q ss_pred chHHHHHHHhc--------cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHH
Q 044047 92 TYNTLFHGLFE--------IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAY 163 (260)
Q Consensus 92 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (260)
.+..+..++.. .|++++|+..|+++.+.. |.+......+.... .+.. .-...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~--------------~~~~----~~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIR--------------ELRA----KLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH--------------HHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHH--------------HHHH----HHHHHH
Confidence 56667777777 899999999999988764 33333332221110 0000 001124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCC--chhhHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCCh-
Q 044047 164 SCLIDGLCKIGKLETAWELFQSLPRVGLMP--NVVTYNIMIHGFCND----------GQMDKAHDLFLDMEAKGVAPNC- 230 (260)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~- 230 (260)
..+...|...|++++|...|+.+.+..... ....+..+..++... |++++|...|+++.+. .|+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 556777778888888888888777653211 234666677777655 7778888888888764 3333
Q ss_pred ---hhHHHHHHHHHhcCchhHHH
Q 044047 231 ---VTFNTLMLGCIRNNETSKVV 250 (260)
Q Consensus 231 ---~~~~~l~~~~~~~~~~~~a~ 250 (260)
.....+...+...++++++.
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444555555555555443
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.51 E-value=4.1e-12 Score=88.99 Aligned_cols=188 Identities=9% Similarity=-0.017 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
+..+......+...|++++|...|++..+.+ |.+...|... ..... ..........+..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKN--------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcch--------------hhhhHHHHHHHHHH
Confidence 3444455666778888888888888887764 3344444440 00000 00001111224445
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC--HH
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK--LE 177 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 177 (260)
+.+.|++++|+..|++..+.. |.+...+..+..++...|++++|...|++..... |.+...+..+...|...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 555555555555555555443 3344555555555555555555555555555443 3344455555554443332 22
Q ss_pred HHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 044047 178 TAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTF 233 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 233 (260)
.+...++.... ..|....+.....++...|++++|...|++..+. .|+....
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 23333333321 1122222333344444455566666666655552 4444433
No 84
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=8.7e-12 Score=97.69 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=117.4
Q ss_pred hHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcc----ccHHHHHHHHHHHhhcCCCcchhhHH
Q 044047 57 TYNTLINGYCKTK---DVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEI----HQVEHALKLFDEMQHSDVAAETSTYN 129 (260)
Q Consensus 57 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 129 (260)
.+..+...|...| +.++|++.|++..+.|.. +...+..+...|... ++.++|+.+|++.. . .+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 5666666666666 677777777777666533 444445555555544 56777777777765 2 3344555
Q ss_pred HHHHH-H--HhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcC-----CHHHHHHHHHhhhhCCCCCchhhHHHH
Q 044047 130 TFIDG-L--CKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIG-----KLETAWELFQSLPRVGLMPNVVTYNIM 201 (260)
Q Consensus 130 ~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (260)
.+... + ...+++++|..+|++....+ ++..+..+...|. .| ++++|...|++.. .| +...+..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 55555 3 45677777777777766554 5556666666665 44 7777777777766 32 55666666
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCchhHHHHHHHHHhhcC
Q 044047 202 IHGFCN----DGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIR----NNETSKVVELLHRMDERN 260 (260)
Q Consensus 202 ~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~ 260 (260)
...|.. ..++++|...|++..+.| +......|...|.. ..+.++|..+++...+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 666655 337777777777777655 33445556666653 346777777777766554
No 85
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=7.4e-11 Score=92.42 Aligned_cols=188 Identities=12% Similarity=0.022 Sum_probs=104.2
Q ss_pred HHHHHHHHHhccC---CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCCccchH
Q 044047 22 VYSTLIDGFCLTG---EIDRARELFVSMDINGCMHNVVTYNTLINGYCKT----KDVEESLNLYSEMLSKGIRPTVVTYN 94 (260)
Q Consensus 22 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (260)
.+..+...|...| +.++|...|+...+.| +++...+..+...|... +++++|+.+|++.. . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 4555566666666 6666666666666655 44444445555555443 46666666666655 2 2344444
Q ss_pred HHHHH-H--hccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcC-----cHHHHHHHHHHhhhcCCCcCHHHHHHH
Q 044047 95 TLFHG-L--FEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNG-----YIVEAAELFRTLRVLKCELGIEAYSCL 166 (260)
Q Consensus 95 ~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (260)
.+... + ...+++++|+.+|++..+.| +...+..+...|. .| ++++|..+|++.. +-++..+..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHH
Confidence 55544 3 34566666666666666554 3344555555554 33 6666666666555 2244555555
Q ss_pred HHHHHh----cCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 044047 167 IDGLCK----IGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCN----DGQMDKAHDLFLDMEAKG 225 (260)
Q Consensus 167 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 225 (260)
...|.. ..+.++|...|+...+.| +......|...|.. ..++++|..+|+...+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 555544 236666666666666554 23344455555543 345666666666666655
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.50 E-value=3e-12 Score=89.70 Aligned_cols=128 Identities=9% Similarity=0.030 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHh
Q 044047 128 YNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCN 207 (260)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (260)
...+..++...|++++|+..+++..... |.+...+..+..++...|++++|...|+++.+... .+..++..+...+..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3458899999999999999999999876 66889999999999999999999999999998753 357788888888876
Q ss_pred cCC--hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 208 DGQ--MDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 208 ~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
.|+ ...+...+..... ..|....+.....++...|++++|...|++.++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 654 4455666665543 2333344555667778899999999999988764
No 87
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.50 E-value=1e-12 Score=107.95 Aligned_cols=173 Identities=10% Similarity=-0.022 Sum_probs=147.3
Q ss_pred hccCCHHHHHHHHHHHh--------hcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc
Q 044047 31 CLTGEIDRARELFVSMD--------INGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE 102 (260)
Q Consensus 31 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (260)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..+++..+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999988 443 567788999999999999999999999999887443 67888999999999
Q ss_pred cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 044047 103 IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWEL 182 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 182 (260)
.|++++|+..|++..+.. +.+...+..+..++...|++++ +..|++..+.. +.+...+..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998876 5677889999999999999999 99999998876 66788999999999999999999999
Q ss_pred HHhhhhCCCCCc-hhhHHHHHHHHHhcCC
Q 044047 183 FQSLPRVGLMPN-VVTYNIMIHGFCNDGQ 210 (260)
Q Consensus 183 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 210 (260)
|+++.+.. |+ ...+..+..++...++
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 99998764 44 5677777777766554
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.49 E-value=6.3e-12 Score=91.24 Aligned_cols=188 Identities=8% Similarity=-0.061 Sum_probs=127.2
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---ccchHHHHHHHhccccHHHHHHHHHHHhhcCC--Ccchh
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT---VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDV--AAETS 126 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 126 (260)
+.+...+-.....+.+.|++++|+..|+++.+..+. + ...+..+..++...|++++|+..|++..+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345666777777888888888888888888776432 2 45667777788888888888888888876531 12244
Q ss_pred hHHHHHHHHHh--------cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhH
Q 044047 127 TYNTFIDGLCK--------NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTY 198 (260)
Q Consensus 127 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (260)
.+..+..++.. .|++++|...|+++.... +.+....... ..+..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~--------------~~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDAT--------------QKIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHH--------------HHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHH--------------HHHHHHHHH----HHHHH
Confidence 56667777777 788888888888777653 2222222111 111111110 11235
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhc----------CchhHHHHHHHHHhhc
Q 044047 199 NIMIHGFCNDGQMDKAHDLFLDMEAKGVA--PNCVTFNTLMLGCIRN----------NETSKVVELLHRMDER 259 (260)
Q Consensus 199 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~ 259 (260)
..+...+...|++++|...|+++.+.... .....+..+..++... |++++|...++++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 67788999999999999999999875211 1345677888888876 8899999999988753
No 89
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=7.1e-12 Score=95.98 Aligned_cols=219 Identities=9% Similarity=-0.018 Sum_probs=166.1
Q ss_pred hhHHHHHHHHHHcC--C---CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhc----C-CC-CchhhHHHHHHHHHhcCC
Q 044047 2 DEASRLLDLMIQRG--V---RPNAFVYSTLIDGFCLTGEIDRARELFVSMDIN----G-CM-HNVVTYNTLINGYCKTKD 70 (260)
Q Consensus 2 ~~a~~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~-~~~~~~~~l~~~~~~~~~ 70 (260)
++|++.+++..+.. . +....++..+...+...|+++.|...+++..+. + .+ ....+++.+..+|...|+
T Consensus 118 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 197 (378)
T 3q15_A 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197 (378)
T ss_dssp HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCC
Confidence 57888888877641 1 123568888999999999999999999987653 1 11 135678899999999999
Q ss_pred hHHHHHHHHHHHhcC----CC-CCccchHHHHHHHhccccHHHHHHHHHHHhhc----CCCcchhhHHHHHHHHHhcCcH
Q 044047 71 VEESLNLYSEMLSKG----IR-PTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS----DVAAETSTYNTFIDGLCKNGYI 141 (260)
Q Consensus 71 ~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~ 141 (260)
+++|...+++..+.. .. ....++..+...|...|++++|...+++..+. +.+....++..+...+...|++
T Consensus 198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 277 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCH
Confidence 999999999887631 11 12356778899999999999999999998761 2244477888999999999999
Q ss_pred HHHHHHHHHhhhcC----CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChHH
Q 044047 142 VEAAELFRTLRVLK----CELGIEAYSCLIDGLCKIGK---LETAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMDK 213 (260)
Q Consensus 142 ~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 213 (260)
++|...+++..... .+.....+..+...+...++ +.+|...++.... .|+ ...+..+...|...|++++
T Consensus 278 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~---~~~~~~~~~~la~~y~~~g~~~~ 354 (378)
T 3q15_A 278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL---HAYIEACARSAAAVFESSCHFEQ 354 (378)
T ss_dssp HHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHCCCHHH
Confidence 99999999887542 12234456667777778888 7777777776322 222 4567788999999999999
Q ss_pred HHHHHHHHHh
Q 044047 214 AHDLFLDMEA 223 (260)
Q Consensus 214 a~~~~~~~~~ 223 (260)
|...|++..+
T Consensus 355 A~~~~~~al~ 364 (378)
T 3q15_A 355 AAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.47 E-value=5.4e-12 Score=93.16 Aligned_cols=201 Identities=11% Similarity=0.027 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhc----CCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-C----c
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDIN----GCMH-NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRP-T----V 90 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~ 90 (260)
..|......|...|++++|...|++.... |-++ ...+|+.+..+|...|++++|+..+++..+..... + .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46888888999999999999999987653 3122 25689999999999999999999999887642111 1 3
Q ss_pred cchHHHHHHHhcc-ccHHHHHHHHHHHhhcCCCc-----chhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH----
Q 044047 91 VTYNTLFHGLFEI-HQVEHALKLFDEMQHSDVAA-----ETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGI---- 160 (260)
Q Consensus 91 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 160 (260)
.+++.+...|... |++++|+..|++..+..... ...++..+...+...|++++|+..+++..........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788889999996 99999999999986542110 1356888999999999999999999998876432221
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCch------hhHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 044047 161 --EAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNV------VTYNIMIHGFC--NDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 161 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 223 (260)
..+..+..++...|++++|...+++..+.. |+. ..+..++..+. ..+++++|...|+.+..
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 256778889999999999999999988743 321 13444556554 45678888888876654
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.47 E-value=9e-12 Score=80.50 Aligned_cols=127 Identities=17% Similarity=0.276 Sum_probs=67.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc
Q 044047 23 YSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE 102 (260)
Q Consensus 23 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (260)
|..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++.+.+.. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 4455555666666666666666655443 334555555555566666666666666655554321 33444455555555
Q ss_pred cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 103 IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555555554443 2334444445555555555555555555444
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.46 E-value=1e-12 Score=87.09 Aligned_cols=145 Identities=11% Similarity=-0.017 Sum_probs=84.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ 105 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (260)
|...+...|++++|+..++...... +.+...+-.+...|.+.|++++|++.|++..+..+. +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 3444555666777777666665442 333445556666677777777777777776665333 55666666666666677
Q ss_pred HHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHH-HHHhhhcCCCcCHHHHHHHHHHHHhcC
Q 044047 106 VEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAEL-FRTLRVLKCELGIEAYSCLIDGLCKIG 174 (260)
Q Consensus 106 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (260)
+++|+..|++..+.. |.+...+..+...|...|+++++.+. +++..+.. |-++.+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 777777666666654 44556666666666666666554433 35555443 445555555555554444
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.46 E-value=1.3e-11 Score=79.69 Aligned_cols=125 Identities=16% Similarity=0.241 Sum_probs=56.5
Q ss_pred HHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC
Q 044047 96 LFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK 175 (260)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (260)
+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 3334444444444444444443332 2233344444444444444444444444444332 2334444444445555555
Q ss_pred HHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 176 LETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
+++|...++.+..... .+...+..+...+...|++++|...++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555554444321 1334444455555555555555555555443
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.46 E-value=4.6e-10 Score=82.66 Aligned_cols=216 Identities=8% Similarity=-0.046 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCccchHHHHHHH----hcc---ccHH
Q 044047 37 DRARELFVSMDINGCMHNVVTYNTLINGYCKTK--DVEESLNLYSEMLSKGIRPTVVTYNTLFHGL----FEI---HQVE 107 (260)
Q Consensus 37 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 107 (260)
++|+.+++.+...+ |.+..+|+.--..+...| ++++++.+++.+....++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 44555555554443 334444444444444444 555555555555544332 333333322222 222 3445
Q ss_pred HHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHH--HHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC------HHHH
Q 044047 108 HALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIV--EAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK------LETA 179 (260)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a 179 (260)
+++.+++.+.+.. +-+..+|+.-.-.+...|.++ ++++.++.+...+ +-+...|+.-...+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 5555555554443 334444444444444444444 5555555554443 3344444444444444443 4455
Q ss_pred HHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHH-HHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 180 WELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDK-AHDLFLDMEAKG--VAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
++.++.+....+. |...|+.+...+.+.|+... +..+..++.+.+ -+.+...+..+..++.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5555554444322 44445444444444444222 333444333221 1223444445555555555555555555554
Q ss_pred h
Q 044047 257 D 257 (260)
Q Consensus 257 ~ 257 (260)
.
T Consensus 285 ~ 285 (306)
T 3dra_A 285 K 285 (306)
T ss_dssp H
T ss_pred H
Confidence 4
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.45 E-value=2.8e-10 Score=83.84 Aligned_cols=228 Identities=9% Similarity=0.048 Sum_probs=183.9
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccC--CHHHHHHHHHHHhhcCCCCchhhHHHHHHHH----Hhc---CChH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTG--EIDRARELFVSMDINGCMHNVVTYNTLINGY----CKT---KDVE 72 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 72 (260)
++|+++++.+...+ |-+...|+.-..++...| ++++++.+++.+...+ |-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 57889999998886 446778888888888888 9999999999998876 66777787666655 555 7899
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHhccccHH--HHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCc------HHHH
Q 044047 73 ESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVE--HALKLFDEMQHSDVAAETSTYNTFIDGLCKNGY------IVEA 144 (260)
Q Consensus 73 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a 144 (260)
+++.+++++.+...+ +..+|+.-...+.+.+.++ +++..++++.+.+ +.+...|+.-...+...+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 999999999998655 7888888888888888888 9999999999887 6678888887777777776 8899
Q ss_pred HHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHH-HHHHHHHhhhhCC--CCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 145 AELFRTLRVLKCELGIEAYSCLIDGLCKIGKLE-TAWELFQSLPRVG--LMPNVVTYNIMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
++.++.+.... +-|...|+.+...+.+.|+.. .+..+...+.+.+ -..+...+..++..+.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999988876 678889998888888888754 4666777776543 1236788999999999999999999999999
Q ss_pred HhCCCCC-ChhhHHH
Q 044047 222 EAKGVAP-NCVTFNT 235 (260)
Q Consensus 222 ~~~~~~p-~~~~~~~ 235 (260)
.+. +.| ....|..
T Consensus 285 ~~~-~Dpir~~yW~~ 298 (306)
T 3dra_A 285 KSK-YNPIRSNFWDY 298 (306)
T ss_dssp HHT-TCGGGHHHHHH
T ss_pred Hhc-cChHHHHHHHH
Confidence 874 233 3444443
No 96
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.45 E-value=5.9e-11 Score=101.35 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=123.0
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHH
Q 044047 32 LTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALK 111 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 111 (260)
..+++++|.++.++. .++.+|..+..++...|++++|+..|.+. -|...|..++.++.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 344555555555432 24666777777777777777777777553 256667777777777777777777
Q ss_pred HHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 044047 112 LFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGL 191 (260)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 191 (260)
.+...++.. +++...+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|..+
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 777666543 23233334777777777766533332 1 345556666777777788888887777763
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 044047 192 MPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELL 253 (260)
Q Consensus 192 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (260)
..|..++.++.+.|++++|.+.+++. .+..+|..+..+|...|++..|....
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 36777777888888888888777765 24577777777777777777776655
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.44 E-value=3.1e-12 Score=105.14 Aligned_cols=179 Identities=9% Similarity=-0.066 Sum_probs=147.6
Q ss_pred hhHHHHHHHHH--------HcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHH
Q 044047 2 DEASRLLDLMI--------QRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEE 73 (260)
Q Consensus 2 ~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 73 (260)
++|++.+++.. +.. +.+...+..+..++.+.|++++|...|+++.+.+ +.+...|..+..++...|++++
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~ 485 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDS 485 (681)
T ss_dssp HHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHH
Confidence 57888888887 443 4567889999999999999999999999998875 6678899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 044047 74 SLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRV 153 (260)
Q Consensus 74 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (260)
|+..|++..+.... +...+..+..++.+.|++++ +..|++..+.+ +.+...+..+..++...|++++|...|++..+
T Consensus 486 A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 486 ATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 99999999987544 67888999999999999999 99999998876 66788999999999999999999999999887
Q ss_pred cCCCcCHHHHHHHHHHHHhcCC--------HHHHHHHHHhh
Q 044047 154 LKCELGIEAYSCLIDGLCKIGK--------LETAWELFQSL 186 (260)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~ 186 (260)
.. +.+...+..+..++...++ +++|.+.+..+
T Consensus 563 l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 563 TS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp TS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred cC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 64 4456778888888766554 44555555444
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.44 E-value=9.5e-12 Score=91.60 Aligned_cols=168 Identities=13% Similarity=0.014 Sum_probs=111.5
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchh-hHHH
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETS-TYNT 130 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 130 (260)
+.+...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...++++.... |+.. ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 445566666777777777777777777777765333 45666777777777777777777777766543 2322 2222
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC-chhhHHHHHHHHHhcC
Q 044047 131 FIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMP-NVVTYNIMIHGFCNDG 209 (260)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 209 (260)
....+...++.+.|...+++..... +.+...+..+...+...|++++|...+.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2333555666666777777776654 5567777777777777788888887777777654221 2456777777777778
Q ss_pred ChHHHHHHHHHHHh
Q 044047 210 QMDKAHDLFLDMEA 223 (260)
Q Consensus 210 ~~~~a~~~~~~~~~ 223 (260)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 77777777776543
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.44 E-value=5e-11 Score=83.70 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC----ChHHHHHHH
Q 044047 3 EASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTK----DVEESLNLY 78 (260)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 78 (260)
+|.+.|+...+.| ++..+..+...|...+++++|...|++..+.| ++..+..+...|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555555555543 44555555666666666666666666655543 34445555555554 4 555566555
Q ss_pred HHHHhcCCCCCccchHHHHHHHhc----cccHHHHHHHHHHHhhcCCC-cchhhHHHHHHHHHh----cCcHHHHHHHHH
Q 044047 79 SEMLSKGIRPTVVTYNTLFHGLFE----IHQVEHALKLFDEMQHSDVA-AETSTYNTFIDGLCK----NGYIVEAAELFR 149 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 149 (260)
++..+.| +...+..+...|.. .+++++|+.+|++..+.+.. ..+..+..+...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5554432 33444444444444 44555555555555544311 013344444444444 444555555555
Q ss_pred Hhhh
Q 044047 150 TLRV 153 (260)
Q Consensus 150 ~~~~ 153 (260)
....
T Consensus 154 ~A~~ 157 (212)
T 3rjv_A 154 GSSS 157 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.43 E-value=1.3e-10 Score=84.92 Aligned_cols=178 Identities=10% Similarity=0.043 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCC-CcchhhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 74 SLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDV-AAETSTYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 74 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
|+..+++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+++.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555566555543 33444555666777777777777777777655542 1355566677777777777777777777776
Q ss_pred hcCCCc-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 153 VLKCEL-----GIEAYSCLIDGL--CKIG--KLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 153 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
.. .| +..+...++.++ ...| +..+|..+|+++.+.. |+..+...++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 234444444442 2223 6777777777776542 3322333334466777777777777776544
Q ss_pred C-----CC----CCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 224 K-----GV----APNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 224 ~-----~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
. +. +-++.++..++......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 2 00 3345555555555555665 66666666654
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.42 E-value=6.2e-12 Score=83.29 Aligned_cols=146 Identities=10% Similarity=-0.113 Sum_probs=100.4
Q ss_pred HHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC
Q 044047 96 LFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK 175 (260)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (260)
|...+...|++++|+..++...... +.+...+..+...|...|++++|++.|++..+.. +-++.+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4455666778888888887776543 3345566677888888888888888888887765 5577788888888888888
Q ss_pred HHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCChhhHHHHHHHHHhcCc
Q 044047 176 LETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDL-FLDMEAKGVAPNCVTFNTLMLGCIRNNE 245 (260)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 245 (260)
+++|...|+...+... -+..++..+...+.+.|++++|... +++..+.. |-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8888888888777542 2467777888888888887765554 46666641 3345566655566655553
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.41 E-value=1.5e-10 Score=82.05 Aligned_cols=187 Identities=10% Similarity=-0.049 Sum_probs=125.9
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc--cchH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGC--MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTV--VTYN 94 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 94 (260)
++..+..+...+.+.|++++|...|+.+.+... +.....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 445566678889999999999999999987631 112357888899999999999999999999886433111 1344
Q ss_pred HHHHHHhc------------------cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 044047 95 TLFHGLFE------------------IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC 156 (260)
Q Consensus 95 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (260)
.+..++.. .|+.++|...|+++.+.. |.+........... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 44444443 467777777777777653 33333322211100 000000
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 157 ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN--VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
......+...|.+.|++++|...|+.+.+...... ...+..+..++.+.|++++|.+.++.+...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01123467788889999999999999887632211 256788889999999999999999988876
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.41 E-value=9.6e-11 Score=82.25 Aligned_cols=177 Identities=11% Similarity=-0.009 Sum_probs=140.0
Q ss_pred HHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccc----cHHHHHHHH
Q 044047 38 RARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIH----QVEHALKLF 113 (260)
Q Consensus 38 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 113 (260)
+|.+.|++..+.| ++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4677788777765 77788888888989999999999999998865 56777788888887 6 899999999
Q ss_pred HHHhhcCCCcchhhHHHHHHHHHh----cCcHHHHHHHHHHhhhcCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 044047 114 DEMQHSDVAAETSTYNTFIDGLCK----NGYIVEAAELFRTLRVLKCE-LGIEAYSCLIDGLCK----IGKLETAWELFQ 184 (260)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 184 (260)
++..+.+ +...+..+...|.. .+++++|..+|++....+.. ..+..+..+...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9987765 45577788888877 88999999999998876521 126778888888888 788999999999
Q ss_pred hhhhCCCCCchhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 044047 185 SLPRVGLMPNVVTYNIMIHGFCND-G-----QMDKAHDLFLDMEAKGV 226 (260)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 226 (260)
+..+. ..+...+..|...|... | ++++|...|++..+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98876 23455677777777643 3 88999999998888763
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.40 E-value=2.2e-11 Score=82.93 Aligned_cols=162 Identities=11% Similarity=0.022 Sum_probs=97.9
Q ss_pred chHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHH-H
Q 044047 92 TYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDG-L 170 (260)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 170 (260)
.+..+...+...|++++|...|++..+.. |.+...+..+..++...|++++|...++...... + ++..+...... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHHH
Confidence 34445556666677777777777665543 4455666666777777777777777776665543 2 44333222211 1
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCchhHH
Q 044047 171 CKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAP-NCVTFNTLMLGCIRNNETSKV 249 (260)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 249 (260)
...+....|...+++..+... .+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 122223345666666665431 245667777777777777777777777777653221 244666777777777777777
Q ss_pred HHHHHHHh
Q 044047 250 VELLHRMD 257 (260)
Q Consensus 250 ~~~~~~m~ 257 (260)
...+++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.39 E-value=3.3e-11 Score=88.68 Aligned_cols=168 Identities=9% Similarity=-0.038 Sum_probs=136.8
Q ss_pred CCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHH-HH
Q 044047 87 RPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAY-SC 165 (260)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 165 (260)
+.+...+..+...+...|++++|...|++..... |.+...+..+...+...|++++|...++.+.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3355667788888999999999999999998876 6678889999999999999999999999987764 444433 33
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcC
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVA-PNCVTFNTLMLGCIRNN 244 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~ 244 (260)
....+...++.+.|...+++...... .+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33446677888889999999887642 36788999999999999999999999999986321 12678899999999999
Q ss_pred chhHHHHHHHHHhh
Q 044047 245 ETSKVVELLHRMDE 258 (260)
Q Consensus 245 ~~~~a~~~~~~m~~ 258 (260)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999887653
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.39 E-value=2.2e-11 Score=98.21 Aligned_cols=150 Identities=10% Similarity=-0.073 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|.+.+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+++.
T Consensus 6 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 6 PRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45566666655543 3345566666666666666666666666666554 445566666666666666666666666666
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc---CcHHHHHHHHHHhhhcC
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN---GYIVEAAELFRTLRVLK 155 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 155 (260)
.+.... +...+..+..++...|++++|...+++..+.. +.+...+..+..++... |++++|.+.+++....+
T Consensus 84 l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 84 SDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 655322 45556666666666666666666666666554 34455666666666666 66666666666665544
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.39 E-value=7.6e-12 Score=85.22 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=36.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 23 YSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 23 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
+......+.+.|++++|...|++..+.. |.+...+..+..++...|++++|+..+++..+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 3344555666666666666666655443 445556666666666666666666666665443
No 108
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.38 E-value=1.9e-10 Score=84.10 Aligned_cols=184 Identities=10% Similarity=0.000 Sum_probs=136.5
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCccchHHHHHHHhccccHHHHHHHHHHHh
Q 044047 39 ARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGI-RPTVVTYNTLFHGLFEIHQVEHALKLFDEMQ 117 (260)
Q Consensus 39 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 117 (260)
|...|++....+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777766554 55666667888999999999999999999877654 2256778889999999999999999999998
Q ss_pred hcCCCc-----chhhHHHHHHHH--Hh--cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 118 HSDVAA-----ETSTYNTFIDGL--CK--NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 118 ~~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
+. .| +..+...++.++ .. .+++.+|..+|+++... .|+...-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 35 345555666553 22 34899999999998764 45533334444589999999999999987655
Q ss_pred CC---------CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 044047 189 VG---------LMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCV 231 (260)
Q Consensus 189 ~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 231 (260)
.. -+-|+.++..++......|+ +|.+++.++.+. .|+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 31 02356777666666666776 889999999985 55544
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.36 E-value=4.9e-11 Score=96.22 Aligned_cols=154 Identities=11% Similarity=-0.038 Sum_probs=119.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHH
Q 044047 68 TKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAEL 147 (260)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 147 (260)
.|++++|+..+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998876433 57788899999999999999999999998875 56788899999999999999999999
Q ss_pred HHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhc---CChHHHHHHHHHHHhC
Q 044047 148 FRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCND---GQMDKAHDLFLDMEAK 224 (260)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 224 (260)
+++..+.. +.+...+..+..++...|++++|.+.+++..+... .+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 56788999999999999999999999999988642 3567888999999999 9999999999999886
Q ss_pred C
Q 044047 225 G 225 (260)
Q Consensus 225 ~ 225 (260)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.36 E-value=2.7e-10 Score=80.70 Aligned_cols=184 Identities=6% Similarity=-0.105 Sum_probs=122.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchh---hH
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT--VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETS---TY 128 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 128 (260)
+...+..+...+...|++++|+..|+++.+..+... ...+..+..++.+.|++++|+..|+++.+.. |.+.. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 345566677788899999999999999987633211 3467778889999999999999999988764 22222 34
Q ss_pred HHHHHHHHh------------------cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 044047 129 NTFIDGLCK------------------NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG 190 (260)
Q Consensus 129 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (260)
..+..++.. .|++++|...|+++.... |-+........... .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH----
Confidence 444444443 345666666666655432 21221111110000 000000
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 191 LMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN----CVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
......+...+.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|.+.++.+...
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 011235677889999999999999999985 333 256888999999999999999999988764
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.32 E-value=1.4e-10 Score=86.23 Aligned_cols=130 Identities=8% Similarity=-0.009 Sum_probs=53.0
Q ss_pred chHHHHHHHhccccHHHHHHHHHHHhhc----CCC-cchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc-----CHH
Q 044047 92 TYNTLFHGLFEIHQVEHALKLFDEMQHS----DVA-AETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL-----GIE 161 (260)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~ 161 (260)
+|+.+...|...|++++|+..|++..+. |-+ ....++..+..+|.. |++++|+..+++........ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3444444444444554444444443221 100 012334444444444 55555555554443221000 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRV----GLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
++..+...|...|++++|...+++.... +..+. ...+..+..++...|++++|...|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444455555555555555555444332 10000 1133333444444455555555555544
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=1.4e-09 Score=88.71 Aligned_cols=231 Identities=11% Similarity=-0.015 Sum_probs=167.7
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHH-HHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 4 ASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRAR-ELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 4 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
+..+|++.... .+.++..|...+..+...|+.++|. .+|+...... |.+...|...+...-+.|+++.|.++|+++.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567777765 3557788888888888888888886 9999887653 5667778888888888999999999999887
Q ss_pred hcCC---------CCC------------ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc-Cc
Q 044047 83 SKGI---------RPT------------VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN-GY 140 (260)
Q Consensus 83 ~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 140 (260)
.... .|+ ..+|...+....+.|..+.|..+|....+.-.......|...+..-.+. ++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 6410 132 2357777888888889999999999987751122334444444333444 45
Q ss_pred HHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC--chhhHHHHHHHHHhcCChHHHHHHH
Q 044047 141 IVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMP--NVVTYNIMIHGFCNDGQMDKAHDLF 218 (260)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 218 (260)
++.|.++|+...+. .+.++..+...+......|+.+.|..+|+........+ ....|...+..-.+.|+.+.+..+.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999988876 35567777788888888899999999999988764321 3457777788778899999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHH
Q 044047 219 LDMEAKGVAPNCVTFNTLMLG 239 (260)
Q Consensus 219 ~~~~~~~~~p~~~~~~~l~~~ 239 (260)
+++.+. .|+......++.-
T Consensus 565 ~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 565 KRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHH--STTCCHHHHHHHH
T ss_pred HHHHHh--CCCCcHHHHHHHH
Confidence 999875 4454444444433
No 113
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.26 E-value=8e-09 Score=77.01 Aligned_cols=225 Identities=10% Similarity=0.020 Sum_probs=145.2
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcc-c-c
Q 044047 29 GFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTK-DVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEI-H-Q 105 (260)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 105 (260)
...+.+..++|+++++.+...+ |-+..+|+.--..+...| ++++++.+++.+.....+ +..+|+.-...+... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3344455567888888887776 556667777777777777 488888888888876554 666676666666555 5 6
Q ss_pred HHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHH--------HHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC--
Q 044047 106 VEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIV--------EAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK-- 175 (260)
Q Consensus 106 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 175 (260)
+++++.+++.+.+.. +-+..+|+.-.-.+.+.|.++ ++++.++++.+.. +-+...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 778888888887765 556666665555555555555 7777777777765 5567777777777766665
Q ss_pred -----HHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCCh--------------------HHHHHHHHHHHhCC-----
Q 044047 176 -----LETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQM--------------------DKAHDLFLDMEAKG----- 225 (260)
Q Consensus 176 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~----- 225 (260)
++++++.++++....+ -|...|+.+-..+.+.|+. ....++..++...+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred cchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 5777777777776543 2566776666666555543 22333333332221
Q ss_pred CCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 226 VAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 226 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
-.++...+..++..|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 134666777788888888888888888887753
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.26 E-value=1.7e-08 Score=75.24 Aligned_cols=218 Identities=11% Similarity=0.107 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhc-C-ChHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTG-EIDRARELFVSMDINGCMHNVVTYNTLINGYCKT-K-DVEESLNLY 78 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 78 (260)
++|+++++.+...+ +-+..+|+.--..+...| .+++++.+++.+...+ |-+..+|+.-...+... + ++++++.++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 57889999999886 446778888888888888 5999999999999887 67888898888777776 7 899999999
Q ss_pred HHHHhcCCCCCccchHHHHHHHhccccHH--------HHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCc-------HHH
Q 044047 79 SEMLSKGIRPTVVTYNTLFHGLFEIHQVE--------HALKLFDEMQHSDVAAETSTYNTFIDGLCKNGY-------IVE 143 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~ 143 (260)
+++.+...+ +..+|+.-...+.+.+.++ +++..++++.+.. +.+...|+.....+.+.+. +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 999987655 7778877666666666666 8999999999886 6788889888888888776 688
Q ss_pred HHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhhhhCC-----CCCchhhH
Q 044047 144 AAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL--------------------ETAWELFQSLPRVG-----LMPNVVTY 198 (260)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~ 198 (260)
+++.+++..... +-|...|+.+-..+.+.|.. .........+...+ -.++...+
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 888888888765 66888888777777766653 33444444444332 12467788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 199 NIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 199 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
..++..|...|+.++|.++++.+.+.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999998765
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.25 E-value=1.4e-09 Score=80.80 Aligned_cols=213 Identities=8% Similarity=0.040 Sum_probs=150.2
Q ss_pred hhHHHHHHHHHHc------CCCcc----HHHHHHHHHHHhccCCHHHHHHHHHHHhhc----CCC-CchhhHHHHHHHHH
Q 044047 2 DEASRLLDLMIQR------GVRPN----AFVYSTLIDGFCLTGEIDRARELFVSMDIN----GCM-HNVVTYNTLINGYC 66 (260)
Q Consensus 2 ~~a~~~~~~~~~~------~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~ 66 (260)
++|.+++++..+. +..++ ...|......|...|++++|...|.+.... +-+ .-..+|+.+..+|.
T Consensus 8 ~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 87 (307)
T 2ifu_A 8 SEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK 87 (307)
T ss_dssp HHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5677777766552 11233 347788888899999999999999887543 211 12457889999999
Q ss_pred hcCChHHHHHHHHHHHhcCC---CC--CccchHHHHHHHhccccHHHHHHHHHHHhhcCCC-----cchhhHHHHHHHHH
Q 044047 67 KTKDVEESLNLYSEMLSKGI---RP--TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVA-----AETSTYNTFIDGLC 136 (260)
Q Consensus 67 ~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~ 136 (260)
..|++++|+..+++..+.-. .+ ...++..+...|.. |++++|+..|++....... ....++..+...|.
T Consensus 88 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV 166 (307)
T ss_dssp HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 99999999999998765311 11 13567788888988 9999999999987653211 11467888999999
Q ss_pred hcCcHHHHHHHHHHhhhcC----CCcC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-Cc---hhhHHHHHHHHHh
Q 044047 137 KNGYIVEAAELFRTLRVLK----CELG-IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM-PN---VVTYNIMIHGFCN 207 (260)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~ 207 (260)
..|++++|+..+++..... ..+. ...+..++.++...|++++|...+++.. .... ++ ......++..+ .
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~ 244 (307)
T 2ifu_A 167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-D 244 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-H
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-H
Confidence 9999999999999887532 1111 2356677788888899999999999988 4211 11 12344555555 5
Q ss_pred cCChHHHHHH
Q 044047 208 DGQMDKAHDL 217 (260)
Q Consensus 208 ~g~~~~a~~~ 217 (260)
.|+.+.+..+
T Consensus 245 ~~d~~~~~~~ 254 (307)
T 2ifu_A 245 EQDEEQLLRV 254 (307)
T ss_dssp TTCHHHHHHH
T ss_pred hcCHHHHHHH
Confidence 6777666553
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.24 E-value=9.2e-09 Score=75.86 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=105.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCC-CCc----cchHHHHHHHhccccHHHHHHHHHHHhhcCCC-cc----hhhHH
Q 044047 60 TLINGYCKTKDVEESLNLYSEMLSKGIR-PTV----VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVA-AE----TSTYN 129 (260)
Q Consensus 60 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 129 (260)
..+..+...|++++|..++++..+.... |+. ..+..+...+...+++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466677788888888888887764221 121 12234556666677888888888887663222 12 22577
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhc-----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCc-hhhH
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVL-----KCE-LGIEAYSCLIDGLCKIGKLETAWELFQSLPRV----GLMPN-VVTY 198 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~ 198 (260)
.+..+|...|++++|...++++... +.. ....++..+...|.+.|++++|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7788888888888888888777631 111 12336777788888888888888887776542 11111 4567
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 044047 199 NIMIHGFCNDGQ-MDKAHDLFLDMEA 223 (260)
Q Consensus 199 ~~l~~~~~~~g~-~~~a~~~~~~~~~ 223 (260)
..+..++...|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777777888884 5788877777653
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.23 E-value=5.1e-09 Score=77.24 Aligned_cols=164 Identities=9% Similarity=-0.036 Sum_probs=123.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCC-CCch----hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc-----cchH
Q 044047 25 TLIDGFCLTGEIDRARELFVSMDINGC-MHNV----VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTV-----VTYN 94 (260)
Q Consensus 25 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~ 94 (260)
..+..+...|++++|..++++...... .|+. ..+..+...+...+++++|+..+++..+.....+. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999876431 2221 13345677777888999999999999884333222 2688
Q ss_pred HHHHHHhccccHHHHHHHHHHHhh------cCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC----CCcC-HHHH
Q 044047 95 TLFHGLFEIHQVEHALKLFDEMQH------SDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK----CELG-IEAY 163 (260)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~ 163 (260)
.+...|...|++++|+..|++..+ ...+....++..+...|...|++++|...+++..... ..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999999873 1112234478899999999999999999998876432 1222 6788
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHhhhh
Q 044047 164 SCLIDGLCKIGK-LETAWELFQSLPR 188 (260)
Q Consensus 164 ~~l~~~~~~~~~-~~~a~~~~~~~~~ 188 (260)
..+..++...|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999998887654
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.23 E-value=1.9e-09 Score=75.53 Aligned_cols=127 Identities=10% Similarity=-0.020 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHH
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGL 100 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (260)
..+..+...+...|++++|...|++.. +|+..+|..+..++...|++++|+..+++..+.... +...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 344556666777777777777776653 456667777777777777777777777777665322 455666677777
Q ss_pred hccccHHHHHHHHHHHhhcCCCcch----------------hhHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 044047 101 FEIHQVEHALKLFDEMQHSDVAAET----------------STYNTFIDGLCKNGYIVEAAELFRTLRV 153 (260)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (260)
...|++++|...|++..+.. +.+. ..+..+..++...|++++|...++....
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777777777766543 2222 3444444445555555555555554443
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.23 E-value=4.1e-10 Score=72.08 Aligned_cols=108 Identities=10% Similarity=0.104 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
...+......+.+.|++++|+..|++..+.+ |.+..+|..+..++.+.|++++|+..+++..+.... +...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence 3456666677777777777777777766654 556666777777777777777777777776665332 45566666666
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHH
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNT 130 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 130 (260)
+...|++++|...|++..+.. |.+......
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~ 120 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREG 120 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 667777777777776666654 334443333
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.23 E-value=1.1e-10 Score=85.71 Aligned_cols=195 Identities=12% Similarity=0.016 Sum_probs=133.9
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
.+...+..+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|+..+++..+.... +...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 356778889999999999999999999998875 568889999999999999999999999999886433 677888899
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLE 177 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (260)
.++...|++++|...|++..+.+ +.+...+...+....+. ..+... ........+.+......+... ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 99999999999999999987653 21211222222222111 111111 112222334455444444332 368889
Q ss_pred HHHHHHHhhhhCCCCCch-hhHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 044047 178 TAWELFQSLPRVGLMPNV-VTYNIMIHGFCND-GQMDKAHDLFLDMEA 223 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 223 (260)
+|.+.++...+.. |+. .....+...+.+. +.+++|.++|.++.+
T Consensus 153 ~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999888887753 443 3333343444444 678889999988765
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.22 E-value=2.3e-09 Score=75.06 Aligned_cols=144 Identities=11% Similarity=-0.043 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLC 136 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (260)
.+..+...+...|++++|+..+++.. .|+...+..+...+...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566778889999999999998774 5578899999999999999999999999998875 667888999999999
Q ss_pred hcCcHHHHHHHHHHhhhcCCC---------------cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHH
Q 044047 137 KNGYIVEAAELFRTLRVLKCE---------------LGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIM 201 (260)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (260)
..|++++|...++........ .....+..+..++...|++++|...++...+.........+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 162 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence 999999999999998875311 12378889999999999999999999999887543333444444
Q ss_pred HHHH
Q 044047 202 IHGF 205 (260)
Q Consensus 202 ~~~~ 205 (260)
+..+
T Consensus 163 ~~~~ 166 (213)
T 1hh8_A 163 MECV 166 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 122
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.21 E-value=1.2e-08 Score=83.33 Aligned_cols=235 Identities=11% Similarity=-0.008 Sum_probs=174.6
Q ss_pred HHHHHHHHHHhccC-------CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHH-HHHHHHHhcCCCCCccc
Q 044047 21 FVYSTLIDGFCLTG-------EIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESL-NLYSEMLSKGIRPTVVT 92 (260)
Q Consensus 21 ~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 92 (260)
..|...+..--..+ ..+.+..+|+++.... +.....|-..+..+...|+.++|. +++++.... .+.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 45555555433322 1345667888887664 668889999999999999999997 999999875 3335556
Q ss_pred hHHHHHHHhccccHHHHHHHHHHHhhcC----------CCc-----------chhhHHHHHHHHHhcCcHHHHHHHHHHh
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDEMQHSD----------VAA-----------ETSTYNTFIDGLCKNGYIVEAAELFRTL 151 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (260)
|..++....+.|+++.|..+|+.+.... .+. ...+|...+....+.|+.+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7778888889999999999999987631 111 2346788888888899999999999999
Q ss_pred hhcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--
Q 044047 152 RVLKCELGIEAYSCLIDGLCKI-GKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAP-- 228 (260)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-- 228 (260)
.+.........|...+..-.+. ++.+.|..+|+...+. .+-+...|...+......|+.+.|..+|++.......+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 8762133445555444444444 4599999999998876 23355667788888888999999999999999863221
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 229 NCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 229 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
....|...+.--.+.|+.+.+..+.+++.+
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346777778877889999999999999875
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.19 E-value=1.4e-08 Score=74.81 Aligned_cols=168 Identities=11% Similarity=0.039 Sum_probs=117.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc-----cchHHHHHHHhccccHHHHHHHHHHHhhcCCC---cc--
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTV-----VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVA---AE-- 124 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~-- 124 (260)
...+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345566777888899999999999887775322111 12334556667788999999998887643211 11
Q ss_pred hhhHHHHHHHHHhcCcHHHHHHHHHHhhhc--CCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC----CCC-
Q 044047 125 TSTYNTFIDGLCKNGYIVEAAELFRTLRVL--KCEL----GIEAYSCLIDGLCKIGKLETAWELFQSLPRVG----LMP- 193 (260)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~- 193 (260)
..+++.+...|...|++++|...+++.... ..+. ...++..+...|...|++++|...+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347788888899999999999998887621 1111 12578888889999999999999888775431 111
Q ss_pred chhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 044047 194 NVVTYNIMIHGFCNDGQMDKA-HDLFLDME 222 (260)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 222 (260)
-..+|..+..++...|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 156778888888899999988 77677665
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.19 E-value=1.7e-09 Score=72.50 Aligned_cols=129 Identities=10% Similarity=0.049 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
+..+..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|+..+++..+.... +...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3455666666677777777777777766554 445666666677777777777777777766665322 45556666666
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHH--HHHHHHhcCcHHHHHHHHHHh
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNT--FIDGLCKNGYIVEAAELFRTL 151 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~ 151 (260)
+...|++++|...+++..+.. +.+...+.. .+..+...|++++|...+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666665543 233333322 222244556666666555543
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.19 E-value=1.9e-09 Score=77.87 Aligned_cols=197 Identities=7% Similarity=-0.087 Sum_probs=140.2
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCchhhHHHH-------HHHHHhcCChHHHHHHHHHHHhcCCCCCc--------------
Q 044047 32 LTGEIDRARELFVSMDINGCMHNVVTYNTL-------INGYCKTKDVEESLNLYSEMLSKGIRPTV-------------- 90 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 90 (260)
..++...|.+.|.++.... |-....|..+ ...+...++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999998886 6677888877 4555555555666555555443 22221
Q ss_pred --------cchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC--H
Q 044047 91 --------VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELG--I 160 (260)
Q Consensus 91 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 160 (260)
.....+...+...|++++|.++|+.+...+ +-+. ....+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 112235567888999999999999887654 3233 66666778889999999999998665432 121 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 044047 161 EAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN--VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTL 236 (260)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 236 (260)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+......|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 4677888999999999999999998875432243 346677788888999999999999999885 4554433333
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.18 E-value=8.7e-10 Score=70.52 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
..+......+.+.|++++|++.|++..+..+. +...|..+..++.+.|++++|+..+++..+.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 34555555566666666666666665554322 44555555555555566666665555555543 34445555555555
Q ss_pred HhcCcHHHHHHHHHHhhhc
Q 044047 136 CKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~ 154 (260)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5555555555555555544
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.17 E-value=2.2e-09 Score=68.10 Aligned_cols=112 Identities=16% Similarity=0.247 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 4556666666677777777777777666554 445566666666666667777777766666654322 44555566666
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
+...|++++|...++++.+.. +.+...+..+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 120 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 120 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 666666666666666665543 3333344444333
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-09 Score=69.47 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=63.4
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..+.... +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 345556666666666666666666666665543 335555666666666666666666666665554222 344555555
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLC 136 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (260)
.++...|++++|...|++..+.. +.+...+..+..++.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 55555666666666665555443 223334444444433
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.16 E-value=3.9e-10 Score=74.43 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=78.0
Q ss_pred chhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHH
Q 044047 124 ETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIH 203 (260)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (260)
+...+..+...+...|++++|...|+...... |.++..|..+..+|...|++++|...|++...... .+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHH
Confidence 45566777777888888888888888877765 56677788888888888888888888888777642 24667777888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChh
Q 044047 204 GFCNDGQMDKAHDLFLDMEAKGVAPNCV 231 (260)
Q Consensus 204 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 231 (260)
++...|++++|...|++..+. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888888888888888888774 34543
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.16 E-value=6e-10 Score=81.69 Aligned_cols=195 Identities=10% Similarity=0.003 Sum_probs=132.9
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 044047 53 HNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFI 132 (260)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (260)
.+...+..+...+...|++++|+..|++..+.... +...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35677888899999999999999999999887433 67888899999999999999999999998875 66788899999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChH
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (260)
.++...|++++|...++...... +.+...+...+....+. ..+... ..........+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 99999999999999999887643 11111111111111111 111111 11222223334444333332 2 368899
Q ss_pred HHHHHHHHHHhCCCCCChh-hHHHHHHHHHhc-CchhHHHHHHHHHhh
Q 044047 213 KAHDLFLDMEAKGVAPNCV-TFNTLMLGCIRN-NETSKVVELLHRMDE 258 (260)
Q Consensus 213 ~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~~~~a~~~~~~m~~ 258 (260)
+|.+.+++..+. .|+.. ....+...+.+. +.+++|.++|++..+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999998887764 45443 333444444444 678889999987654
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.16 E-value=4.6e-09 Score=70.31 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=43.3
Q ss_pred hHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHh
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCK 172 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (260)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...... +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3344444444455555555555444432 2334444444444444555555555444444432 2334444444444444
Q ss_pred cCCHHHHHHHHHhhhh
Q 044047 173 IGKLETAWELFQSLPR 188 (260)
Q Consensus 173 ~~~~~~a~~~~~~~~~ 188 (260)
.|++++|...++++.+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.16 E-value=1.4e-09 Score=69.64 Aligned_cols=118 Identities=10% Similarity=0.007 Sum_probs=68.0
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
+...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 44556666666666666666666666665543 345556666666666666666666666666554222 3445555555
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcC
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNG 139 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 139 (260)
.+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 6666666666666666655543 334444445555444444
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.15 E-value=6.9e-10 Score=80.09 Aligned_cols=187 Identities=10% Similarity=-0.032 Sum_probs=140.0
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCccchHHH-------HHHHhccccHHHHHHHHHHHhhcCCCcc---------------
Q 044047 67 KTKDVEESLNLYSEMLSKGIRPTVVTYNTL-------FHGLFEIHQVEHALKLFDEMQHSDVAAE--------------- 124 (260)
Q Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 124 (260)
..++...|.+.|.++.+..+. ....|..+ ...+...++..+++..+..-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 579999999999999987544 56677766 45566666666666666554431 111
Q ss_pred -------hhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc--h
Q 044047 125 -------TSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN--V 195 (260)
Q Consensus 125 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 195 (260)
......+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1234456788899999999999999887654 333366677778999999999999998776542 111 3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 044047 196 VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN--CVTFNTLMLGCIRNNETSKVVELLHRMDER 259 (260)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 259 (260)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4678889999999999999999999986433253 346677888999999999999999998764
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.14 E-value=1.4e-09 Score=75.41 Aligned_cols=158 Identities=11% Similarity=-0.026 Sum_probs=96.1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhc----C-CCcchhhHHHHHHHHHhcCc
Q 044047 66 CKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS----D-VAAETSTYNTFIDGLCKNGY 140 (260)
Q Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~ 140 (260)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... + .+....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567888888855444332 2234566777777777888888888888776541 1 12234566677777777888
Q ss_pred HHHHHHHHHHhhhcC--CC----cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC---CCc--hhhHHHHHHHHHhcC
Q 044047 141 IVEAAELFRTLRVLK--CE----LGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGL---MPN--VVTYNIMIHGFCNDG 209 (260)
Q Consensus 141 ~~~a~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g 209 (260)
+++|...+++..... .+ .....+..+...+...|++++|...+++...... .+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 888887777665430 11 1234566677777777888888777777653210 111 223466667777777
Q ss_pred ChHHHHHHHHHHHhC
Q 044047 210 QMDKAHDLFLDMEAK 224 (260)
Q Consensus 210 ~~~~a~~~~~~~~~~ 224 (260)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777777766653
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.14 E-value=1.2e-09 Score=74.28 Aligned_cols=121 Identities=7% Similarity=0.081 Sum_probs=76.2
Q ss_pred hccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHH-HHhcCCH--H
Q 044047 101 FEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDG-LCKIGKL--E 177 (260)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 177 (260)
...|++++|...++...+.. +.+...+..+..+|...|++++|...+++..... +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34566666766676666554 4455666677777777777777777777766554 4455666666666 6666776 7
Q ss_pred HHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 178 TAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
+|...++.+..... .+...+..+...+...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777666532 23556666777777777777777777777664
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.13 E-value=3.3e-09 Score=68.14 Aligned_cols=118 Identities=13% Similarity=0.081 Sum_probs=69.5
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHH
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTF 131 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (260)
+.+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 334556666667777777777777777776655322 45556666666666666666666666665553 3445556666
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHh
Q 044047 132 IDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCK 172 (260)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (260)
..++...|++++|...+++..... +.+...+..+..++..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 666666666666666666655443 2233444444444443
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.13 E-value=2.6e-10 Score=85.78 Aligned_cols=87 Identities=10% Similarity=-0.031 Sum_probs=46.3
Q ss_pred cchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHH
Q 044047 91 VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGL 170 (260)
Q Consensus 91 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (260)
.+|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..... +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 445555555555555555555555555543 3344555555555555555555555555555443 33444555555555
Q ss_pred HhcCCHHHH
Q 044047 171 CKIGKLETA 179 (260)
Q Consensus 171 ~~~~~~~~a 179 (260)
...|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.13 E-value=9e-09 Score=75.90 Aligned_cols=167 Identities=10% Similarity=-0.005 Sum_probs=124.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCc-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CC--cc
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHN-----VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIR---PT--VV 91 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 91 (260)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567778899999999999998876532211 122445666778889999999999998764222 11 34
Q ss_pred chHHHHHHHhccccHHHHHHHHHHHhh---cC-CCc--chhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC----CCc-CH
Q 044047 92 TYNTLFHGLFEIHQVEHALKLFDEMQH---SD-VAA--ETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK----CEL-GI 160 (260)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 160 (260)
+++.+...|...|++++|...|++..+ .. ..+ ...++..+...|...|++++|...+++..... ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999999998862 21 111 12588899999999999999999999876432 111 26
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHhhhh
Q 044047 161 EAYSCLIDGLCKIGKLETA-WELFQSLPR 188 (260)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 188 (260)
.+|..+...|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777776543
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.12 E-value=1.3e-09 Score=71.91 Aligned_cols=98 Identities=10% Similarity=-0.037 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
...+..+...+.+.|++++|+..|++.....+. +...|..+..++...|++++|+..|++..+.. |.++..+..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 334444444555555555555555555444222 34444445555555555555555555554443 3344444455555
Q ss_pred HHhcCcHHHHHHHHHHhhhc
Q 044047 135 LCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~ 154 (260)
|...|++++|...|+.....
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555554443
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.12 E-value=5e-09 Score=66.36 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34555555566666666666666666555422 134445555555555555555555555555443 3344445555555
Q ss_pred HHhcCcHHHHHHHHHHhhhc
Q 044047 135 LCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~ 154 (260)
+...|++++|...++.+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.11 E-value=3e-09 Score=68.01 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=63.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFID 133 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (260)
+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3445555566666666666666666666554221 34455555555555666666666665555443 334445555555
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC
Q 044047 134 GLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK 175 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (260)
++...|++++|...++...... +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555555555443 3344444444444444443
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.11 E-value=2e-09 Score=74.63 Aligned_cols=158 Identities=11% Similarity=-0.066 Sum_probs=110.7
Q ss_pred HhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC-CCccchHHHHHHHhccc
Q 044047 30 FCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK----GIR-PTVVTYNTLFHGLFEIH 104 (260)
Q Consensus 30 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~ 104 (260)
+...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34678999999965555432 1346678888889999999999999999887762 111 13456777888888999
Q ss_pred cHHHHHHHHHHHhhc----CCC--cchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC-CcC----HHHHHHHHHHHHhc
Q 044047 105 QVEHALKLFDEMQHS----DVA--AETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC-ELG----IEAYSCLIDGLCKI 173 (260)
Q Consensus 105 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~ 173 (260)
++++|...+++.... +-. .....+..+...+...|++++|...+++...... ..+ ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999887543 201 2245577788888899999999999988764311 112 23457788888899
Q ss_pred CCHHHHHHHHHhhhh
Q 044047 174 GKLETAWELFQSLPR 188 (260)
Q Consensus 174 ~~~~~a~~~~~~~~~ 188 (260)
|++++|...+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999888877665
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.08 E-value=1.3e-09 Score=71.83 Aligned_cols=98 Identities=11% Similarity=-0.046 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
+...+..+...+.+.|++++|...|+.....+ |.+...|..+..++...|++++|+..|++....... +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 33444445555555555555555555554443 334455555555555555555555555555544222 3444444555
Q ss_pred HHhccccHHHHHHHHHHHhh
Q 044047 99 GLFEIHQVEHALKLFDEMQH 118 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~ 118 (260)
++...|++++|...|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555443
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.08 E-value=2e-09 Score=70.94 Aligned_cols=109 Identities=10% Similarity=0.084 Sum_probs=74.4
Q ss_pred HHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC
Q 044047 113 FDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM 192 (260)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 192 (260)
++++.... +.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++.+.....
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p- 86 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI- 86 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-
Confidence 34444433 3345556666777777777777777777776654 55677777777777777777777777777776532
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 193 PNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 193 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
.+...+..+..++...|++++|...|++..+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 24566777777777777777777777777654
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.07 E-value=1.7e-09 Score=73.53 Aligned_cols=119 Identities=11% Similarity=0.099 Sum_probs=64.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH-HHhcCcH--HHH
Q 044047 68 TKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG-LCKNGYI--VEA 144 (260)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 144 (260)
.|++++|+..+++..+... .+...+..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4555555555555554422 144555555555556666666666666555443 3344455555555 5556665 666
Q ss_pred HHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 145 AELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
...++...... +.+...+..+...+...|++++|...++.+.+.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666665543 334555666666666666666666666666554
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.05 E-value=5.2e-09 Score=68.39 Aligned_cols=100 Identities=13% Similarity=-0.035 Sum_probs=77.0
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
+...+..+...+.+.|++++|...|+.....+ |.+...|..+..++...|++++|+..|++....... +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 45566667777888888888888888887765 567777888888888888888888888888776433 5666777788
Q ss_pred HHhccccHHHHHHHHHHHhhcC
Q 044047 99 GLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
++...|++++|...|++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888876653
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.05 E-value=7.6e-09 Score=77.84 Aligned_cols=96 Identities=13% Similarity=-0.056 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHH
Q 044047 125 TSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHG 204 (260)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (260)
...+..+..+|...|++++|+..++...... +.+...+..+..+|...|++++|...|+++.+... .+...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 4678889999999999999999999988876 66788899999999999999999999999888642 256788888889
Q ss_pred HHhcCChHHH-HHHHHHHH
Q 044047 205 FCNDGQMDKA-HDLFLDME 222 (260)
Q Consensus 205 ~~~~g~~~~a-~~~~~~~~ 222 (260)
+...|+.++| ...+..|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998888 45666664
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.05 E-value=4.5e-10 Score=77.89 Aligned_cols=174 Identities=16% Similarity=0.025 Sum_probs=81.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ 105 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (260)
.+......|+++.+.+.++.-.... ......+..+...+...|++++|+..|++..+.... +. .+... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~--------~ 78 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ--------I 78 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH--------H
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh--------h
Confidence 3444445566666666664332211 224556777777888888888888888888764222 11 01000 0
Q ss_pred HHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044047 106 VEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQS 185 (260)
Q Consensus 106 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (260)
...-. . ......+..+..+|...|++++|+..++...... +.+...+..+..++...|++++|...|+.
T Consensus 79 ~~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 0 0012345555566666666666666666655543 44555666666666666666666666666
Q ss_pred hhhCCCCCchhhHHHHHHHHHhcCChHHHH-HHHHHHH
Q 044047 186 LPRVGLMPNVVTYNIMIHGFCNDGQMDKAH-DLFLDME 222 (260)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~ 222 (260)
..+... .+...+..+..++...++.+++. ..+..+.
T Consensus 148 al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 148 AASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHST-TCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555421 13445555555555555555554 3344443
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.04 E-value=2.1e-08 Score=62.73 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
.+..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 34556666666667777777777777666554 445666666666666677777777777666655322 4455556666
Q ss_pred HHhccccHHHHHHHHHHHhhcC
Q 044047 99 GLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
++...|++++|...+++..+.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 6666666666666666665543
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.02 E-value=2.6e-09 Score=69.88 Aligned_cols=99 Identities=12% Similarity=0.006 Sum_probs=69.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFID 133 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (260)
+...+..+...+...|++++|+..|++.....+. +...|..+..++...|++++|+..|++..... |.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 4455666667777777777777777777765433 56666677777777777777777777777665 455666677777
Q ss_pred HHHhcCcHHHHHHHHHHhhhc
Q 044047 134 GLCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~ 154 (260)
++...|++++|...|+.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.02 E-value=9.9e-07 Score=65.52 Aligned_cols=215 Identities=10% Similarity=0.008 Sum_probs=146.7
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCC----------HHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC--
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGE----------IDRARELFVSMDINGCMHNVVTYNTLINGYCKTK-- 69 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 69 (260)
++|+++++.+...+ |-+..+|+.--..+...+. +++++.+++.+...+ |-+..+|+.-...+...+
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc
Confidence 46788888888775 3355666665555544433 678888888888766 667788887777777777
Q ss_pred ChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc-HHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc----------
Q 044047 70 DVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ-VEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN---------- 138 (260)
Q Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 138 (260)
++++++.+++++.+..+. |..+|+.-...+...|. +++++..++.+.+.+ +.+...|+.....+...
T Consensus 125 ~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 478999999999887655 77777777777777777 588888888888876 66777777766665554
Q ss_pred ----CcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhc-----------CCHHHHHHHHHhhhhCCCCCchhhHHHHHH
Q 044047 139 ----GYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKI-----------GKLETAWELFQSLPRVGLMPNVVTYNIMIH 203 (260)
Q Consensus 139 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (260)
+.++++++.+....... |-|...|+-+-..+.+. +.++++++.++++.+.. |+. .|..+..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~-~w~l~~~ 278 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN-KWCLLTI 278 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc-chHHHHH
Confidence 45777888888777665 66777776554444444 34667777777777653 442 3332222
Q ss_pred -----HHHhcCChHHHHHHHHHHHhC
Q 044047 204 -----GFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 204 -----~~~~~g~~~~a~~~~~~~~~~ 224 (260)
.....|..+++...+.++.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHh
Confidence 222356667777777777763
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.01 E-value=9.8e-07 Score=65.54 Aligned_cols=231 Identities=10% Similarity=0.015 Sum_probs=164.5
Q ss_pred HHHHHHHHHH---HhccCCH-HHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhcC
Q 044047 20 AFVYSTLIDG---FCLTGEI-DRARELFVSMDINGCMHNVVTYNTLINGYCKTKD----------VEESLNLYSEMLSKG 85 (260)
Q Consensus 20 ~~~~~~l~~~---~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~ 85 (260)
...|..+... ..+.|.+ ++|+.+++.+...+ |-+..+|+.--..+...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 3444444433 2345554 47999999999876 5566677755555444433 678999999998876
Q ss_pred CCCCccchHHHHHHHhccc--cHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCc-HHHHHHHHHHhhhcCCCcCHHH
Q 044047 86 IRPTVVTYNTLFHGLFEIH--QVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGY-IVEAAELFRTLRVLKCELGIEA 162 (260)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 162 (260)
++ +..+|+.-...+...+ .+++++.+++.+.+.. +-+...|+.-.-.+...|. ++++++.+..+.... +-|...
T Consensus 105 PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 105 PK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp TT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred CC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 55 7788888777777777 4899999999999887 6688888887777788888 589999999998876 667778
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhc-----------CChHHHHHH
Q 044047 163 YSCLIDGLCKI--------------GKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCND-----------GQMDKAHDL 217 (260)
Q Consensus 163 ~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~ 217 (260)
|+.....+.+. +.++++++.+.......+ -|..+|+.+-..+.+. +.++++++.
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 87776666554 457889999988887643 3677777655555544 457899999
Q ss_pred HHHHHhCCCCCChhhHHHHHHH-----HHhcCchhHHHHHHHHHhh
Q 044047 218 FLDMEAKGVAPNCVTFNTLMLG-----CIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 218 ~~~~~~~~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~ 258 (260)
++++.+. .|+. .|..+..+ ....|..+++...+.++++
T Consensus 261 ~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 261 CKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 9999885 4553 33322221 1245777788888888765
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.00 E-value=2.1e-08 Score=63.96 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
++..+..+...+.+.|++++|...|++..+.. |.+...|..+..++.+.|++++|+..+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34556667777777777777777777776664 556677777777777777777777777777765432 4556666777
Q ss_pred HHhccccHHHHHHHHHHHhhc
Q 044047 99 GLFEIHQVEHALKLFDEMQHS 119 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~ 119 (260)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 777777777777777766553
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.00 E-value=1.3e-09 Score=75.52 Aligned_cols=130 Identities=14% Similarity=-0.018 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC----------------HHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 125 TSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELG----------------IEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
...+..+...+...|++++|...|++..... +.+ ...+..+..++...|++++|...++...+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3445566666677777777777777666542 112 36788899999999999999999999988
Q ss_pred CCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHH-HHHHHHh
Q 044047 189 VGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVV-ELLHRMD 257 (260)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~m~ 257 (260)
.. +.+...+..+..++...|++++|...|++..+.. +-+...+..+..++...++.+++. ..+..|.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 64 2367889999999999999999999999998762 335677778888888888777766 4444443
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.98 E-value=5.7e-08 Score=60.73 Aligned_cols=97 Identities=12% Similarity=-0.004 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
..+..+...+...|++++|...+++....... +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34455555555555666666655555544221 34444455555555555555555555554443 33344444555555
Q ss_pred HhcCcHHHHHHHHHHhhhc
Q 044047 136 CKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~ 154 (260)
...|++++|...++.....
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555554443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.97 E-value=4.2e-08 Score=62.51 Aligned_cols=97 Identities=10% Similarity=-0.060 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHH
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGF 205 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (260)
..+......+...|++++|...|++..... +.+...|..+..++...|++++|...++...+... .+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 345556666666777777777776666554 44566666677777777777777777776666532 2455666666777
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 044047 206 CNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 206 ~~~g~~~~a~~~~~~~~~~ 224 (260)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777766653
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.96 E-value=2.2e-08 Score=64.71 Aligned_cols=101 Identities=14% Similarity=0.047 Sum_probs=75.8
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHH
Q 044047 17 RPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTL 96 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 96 (260)
+.++..+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..+++..+.... +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 3456777778888888888888888888877665 556777788888888888888888888887776433 56677777
Q ss_pred HHHHhccccHHHHHHHHHHHhhc
Q 044047 97 FHGLFEIHQVEHALKLFDEMQHS 119 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~ 119 (260)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 77787888888888888776654
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.96 E-value=2.6e-08 Score=66.72 Aligned_cols=101 Identities=10% Similarity=0.058 Sum_probs=76.1
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
.++..+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..+++..+.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 356677777888888888888888888877765 556777788888888888888888888887776433 566777777
Q ss_pred HHHhccccHHHHHHHHHHHhhcC
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
.++...|++++|...|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 77888888888888887776653
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.94 E-value=3.2e-08 Score=63.24 Aligned_cols=107 Identities=10% Similarity=0.024 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC--Cc----hhhHH
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM--PN----VVTYN 199 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 199 (260)
..+..+...+.+.|++++|+..|++..... |.+...|..+..+|...|++++|...+++..+.... ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566666677777777777777666654 445666777777777777777777777666543210 01 13566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 044047 200 IMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNT 235 (260)
Q Consensus 200 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 235 (260)
.+..++...|++++|++.|++.+.. .|++.+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 6667777777777777777777663 455554433
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.94 E-value=2.8e-08 Score=63.56 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--C----ccch
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRP--T----VVTY 93 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 93 (260)
...+..+...+.+.|++++|+..|++..+.. |.+...|..+..+|...|++++|+..+++..+..... + ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4456677777777888888888887777665 5566777777777778888888877777776542110 0 1234
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhh
Q 044047 94 NTLFHGLFEIHQVEHALKLFDEMQH 118 (260)
Q Consensus 94 ~~l~~~~~~~~~~~~a~~~~~~~~~ 118 (260)
..+..++...|++++|+..|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555556666666666665544
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.94 E-value=5.3e-08 Score=60.30 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=40.9
Q ss_pred chHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc--CHHHHHHHHHH
Q 044047 92 TYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL--GIEAYSCLIDG 169 (260)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 169 (260)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..... +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33444444444444444444444444332 2233344444444444444444444444444332 22 33444444444
Q ss_pred HHhc-CCHHHHHHHHHhhhh
Q 044047 170 LCKI-GKLETAWELFQSLPR 188 (260)
Q Consensus 170 ~~~~-~~~~~a~~~~~~~~~ 188 (260)
+... |++++|.+.++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 4444 444444444444443
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=9.3e-08 Score=62.50 Aligned_cols=100 Identities=10% Similarity=-0.022 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHN---VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNT 95 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (260)
+...+..+...+...|++++|...|+...+.. +.+ ...|..+..++...|++++|+..+++..+.... +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 45566666777777777777777777766553 222 556666666667777777777777666654322 4455556
Q ss_pred HHHHHhccccHHHHHHHHHHHhhcC
Q 044047 96 LFHGLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
+..++...|++++|...|++..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6666666666666666666665543
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.90 E-value=3.5e-07 Score=71.10 Aligned_cols=198 Identities=7% Similarity=-0.052 Sum_probs=129.0
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCch----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNV----------------VTYNTLINGYCKTKDVEESLNLYSEMLSKGIR-PT 89 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 89 (260)
...+.+.|++++|.+.|..+.+....... .++..+...|...|++++|.+.+.++...-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 55677889999999999888765422111 13677888888888888888888877653111 11
Q ss_pred c----cchHHHHHHHhccccHHHHHHHHHHHhhc----CC-CcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC-----
Q 044047 90 V----VTYNTLFHGLFEIHQVEHALKLFDEMQHS----DV-AAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK----- 155 (260)
Q Consensus 90 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 155 (260)
. .+.+.+...+...|+.+.+..+++..... +. ..-..++..+...+...|++++|..+++.+...-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12233344455667888888888776432 21 1224566778888888888888888887765331
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 156 CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV----GLMPN--VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
.+.....+..++..|...|++++|..+++..... +.++. ...+..+...+...|++++|...|.+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1112456777788888888888888888776542 11111 234556666677788888888888777653
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.89 E-value=4e-08 Score=62.73 Aligned_cols=112 Identities=10% Similarity=0.057 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC--Cc----hhhHH
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM--PN----VVTYN 199 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 199 (260)
..+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++.+...... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555666666666666666666665543 445556666666666666666666666665543211 11 45566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044047 200 IMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGC 240 (260)
Q Consensus 200 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 240 (260)
.+..++...|++++|...|++..+. .|+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 6666777777777777777776664 34554444444433
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.89 E-value=5.3e-08 Score=62.89 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=57.4
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 044047 53 HNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFI 132 (260)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (260)
.+...|..+...+...|++++|+..|++..+.... +...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 34555666666666666666666666666554322 34555555666666666666666666655543 33455555556
Q ss_pred HHHHhcCcHHHHHHHHHHhhh
Q 044047 133 DGLCKNGYIVEAAELFRTLRV 153 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~ 153 (260)
.++...|++++|...++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666655543
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.88 E-value=4.7e-08 Score=60.52 Aligned_cols=99 Identities=10% Similarity=-0.092 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCccchHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIR-PTVVTYNTLFH 98 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 98 (260)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.... .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4445555666666666666666666665543 344555556666666666666666666665554211 02445555555
Q ss_pred HHhcc-ccHHHHHHHHHHHhhc
Q 044047 99 GLFEI-HQVEHALKLFDEMQHS 119 (260)
Q Consensus 99 ~~~~~-~~~~~a~~~~~~~~~~ 119 (260)
.+... |++++|.+.++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55566 6666666666655544
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.88 E-value=2.9e-08 Score=63.36 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CC----ccch
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIR--PT----VVTY 93 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 93 (260)
+..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4556667777777777777777777776654 456666777777777777777777777776654221 11 4455
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhhc
Q 044047 94 NTLFHGLFEIHQVEHALKLFDEMQHS 119 (260)
Q Consensus 94 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (260)
..+...+...|++++|...|++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55666666666666666666666554
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.88 E-value=2.5e-07 Score=71.91 Aligned_cols=188 Identities=10% Similarity=-0.012 Sum_probs=134.7
Q ss_pred hhHHHHHHHHHHcCCCccH----------------HHHHHHHHHHhccCCHHHHHHHHHHHhhcC-CCCch----hhHHH
Q 044047 2 DEASRLLDLMIQRGVRPNA----------------FVYSTLIDGFCLTGEIDRARELFVSMDING-CMHNV----VTYNT 60 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~ 60 (260)
++|++.|..+.+....... ..+..++..|...|++++|.+.+..+...- ..++. .+.+.
T Consensus 21 ~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (434)
T 4b4t_Q 21 NEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTL 100 (434)
T ss_dssp HHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 6788999888886433211 246788999999999999999999876531 11222 12333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc----CCCCC-ccchHHHHHHHhccccHHHHHHHHHHHhhc--C---CCcchhhHHH
Q 044047 61 LINGYCKTKDVEESLNLYSEMLSK----GIRPT-VVTYNTLFHGLFEIHQVEHALKLFDEMQHS--D---VAAETSTYNT 130 (260)
Q Consensus 61 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~---~~~~~~~~~~ 130 (260)
+-..+...|+++.|..++++.... +..+. ..++..+...+...|++++|..+++++... + -+....++..
T Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
T 4b4t_Q 101 IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180 (434)
T ss_dssp HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 444455678999999999887643 22222 346678899999999999999999987543 1 1122457888
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhcC--CC--cC--HHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 131 FIDGLCKNGYIVEAAELFRTLRVLK--CE--LG--IEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
++..|...|++++|...++...... .. +. ...+..+...+...|++++|...+....+.
T Consensus 181 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 181 ESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8999999999999999998875431 11 11 245667778888899999999999888775
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.87 E-value=1.5e-07 Score=63.01 Aligned_cols=98 Identities=13% Similarity=0.029 Sum_probs=64.3
Q ss_pred ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHH
Q 044047 90 VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDG 169 (260)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (260)
...+..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|+..++...... +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455566666667777777777777766654 4456666666667777777777777776666554 4456666666667
Q ss_pred HHhcCCHHHHHHHHHhhhhC
Q 044047 170 LCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~ 189 (260)
+...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77777777777777666654
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=2.1e-07 Score=60.80 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=57.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHH
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT----VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYN 129 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 129 (260)
+...+..+...+...|++++|+..|++..+.. |+ ...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 45556666666667777777777777666542 33 3445555555566666666666666555543 33444555
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhc
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (260)
.+..++...|++++|...+++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555566666666655555544
No 171
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=4.3e-06 Score=66.18 Aligned_cols=205 Identities=9% Similarity=-0.029 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHH
Q 044047 36 IDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDE 115 (260)
Q Consensus 36 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 115 (260)
.+.+..+|+++.... +.+...|...+..+...|+.+.|..++++.... |....... .|....+.++. ++.
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHH
Confidence 345678888887754 667888999999999999999999999999987 44332211 22222111221 222
Q ss_pred HhhcC------------CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcC-CHHHHHHH
Q 044047 116 MQHSD------------VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIG-KLETAWEL 182 (260)
Q Consensus 116 ~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~ 182 (260)
+.+.- .......|...+....+.++.+.|..+|+.. ... +.+...|...+..-...+ +.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 22110 0112345777777777788899999999998 322 235555554333333333 69999999
Q ss_pred HHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 183 FQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
|+...+... -++..+...+......|+.+.|..+|+++. .....|...+.--...|+.+.+..++++..+
T Consensus 343 fe~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999887532 234456667777788999999999999873 2567777777766778999999998888763
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.83 E-value=7e-08 Score=61.09 Aligned_cols=95 Identities=8% Similarity=-0.072 Sum_probs=58.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc
Q 044047 23 YSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE 102 (260)
Q Consensus 23 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (260)
+..+...+.+.|++++|...|+...+.. |.+...|..+..++...|++++|+..+++..+..+. +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445556666666666666666666554 445666666666666666666666666666665332 44555666666666
Q ss_pred cccHHHHHHHHHHHhhc
Q 044047 103 IHQVEHALKLFDEMQHS 119 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~ 119 (260)
.|++++|+..+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666543
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.79 E-value=5.2e-09 Score=82.49 Aligned_cols=125 Identities=10% Similarity=0.081 Sum_probs=100.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHh
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLF 101 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (260)
.+..+...+.+.|++++|.+.+++..+.. +.+..+|..+..++.+.|++++|+..+++..+.... +..++..+..+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34445566778999999999999998875 667899999999999999999999999999987443 6778889999999
Q ss_pred ccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH--HHhcCcHHHHHHHHH
Q 044047 102 EIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG--LCKNGYIVEAAELFR 149 (260)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 149 (260)
..|++++|...|++..+.. +.+...+..+..+ +...|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998765 4455566666666 788899999999988
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.78 E-value=1.7e-07 Score=73.59 Aligned_cols=87 Identities=10% Similarity=-0.021 Sum_probs=40.1
Q ss_pred cchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHH
Q 044047 91 VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGL 170 (260)
Q Consensus 91 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (260)
..|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..... +.+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444445555555555555555544443 3344444455555555555555555555544432 22333444444444
Q ss_pred HhcCCHHHH
Q 044047 171 CKIGKLETA 179 (260)
Q Consensus 171 ~~~~~~~~a 179 (260)
.+.++.+++
T Consensus 396 ~~~~~~~~a 404 (457)
T 1kt0_A 396 KKAKEHNER 404 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.77 E-value=1.2e-07 Score=60.01 Aligned_cols=89 Identities=13% Similarity=-0.024 Sum_probs=36.1
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCCh
Q 044047 132 IDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQM 211 (260)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (260)
...+.+.|++++|...++...... +.+...|..+..++...|++++|...+++..+... .+...+..+..++...|++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 333344444444444444443332 22333444444444444444444444444433321 1233334444444444444
Q ss_pred HHHHHHHHHHH
Q 044047 212 DKAHDLFLDME 222 (260)
Q Consensus 212 ~~a~~~~~~~~ 222 (260)
++|...+++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.76 E-value=6.4e-07 Score=57.03 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=55.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCCCch---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--ccchHHHHHH
Q 044047 25 TLIDGFCLTGEIDRARELFVSMDINGCMHNV---VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT--VVTYNTLFHG 99 (260)
Q Consensus 25 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 99 (260)
.+...+...|++++|...|+.+.+.. |.+. ..+..+..++...|++++|...+++..+...... ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34555666677777777776666543 2222 3556666666666777777777666665432210 3445555666
Q ss_pred HhccccHHHHHHHHHHHhhc
Q 044047 100 LFEIHQVEHALKLFDEMQHS 119 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~ 119 (260)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.76 E-value=1.9e-08 Score=79.26 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=76.7
Q ss_pred hHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHh
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCK 172 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (260)
+..+...+.+.|++++|...|++..+.. +.+...+..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344445556677777777777766654 4456667777777777777777777777776654 4456667777777777
Q ss_pred cCCHHHHHHHHHhhhhCCCCCchhhHHHHHHH--HHhcCChHHHHHHHH
Q 044047 173 IGKLETAWELFQSLPRVGLMPNVVTYNIMIHG--FCNDGQMDKAHDLFL 219 (260)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 219 (260)
.|++++|.+.++++.+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777776664321 23444444444 666677777777766
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.75 E-value=1.9e-07 Score=71.16 Aligned_cols=123 Identities=9% Similarity=-0.028 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhc---------------CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDIN---------------GCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
...+..+...+.+.|++++|...|++..+. .-+.+..+|..+..++.+.|++++|+..+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 345667777888888888888888877651 00223445555555566666666666666665554
Q ss_pred CCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHH
Q 044047 85 GIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEA 144 (260)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 144 (260)
... +...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++
T Consensus 303 ~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 222 34455555555555555666655555555443 33444444444444444444433
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.75 E-value=1.1e-07 Score=62.95 Aligned_cols=131 Identities=14% Similarity=0.033 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC----CCC-chh
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKCE-LG----IEAYSCLIDGLCKIGKLETAWELFQSLPRVG----LMP-NVV 196 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 196 (260)
++..+...+...|++++|...+++....... .+ ...+..+...+...|++++|...++...... ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555544322100 01 1244555555556666666666655543321 000 123
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFLDMEAK----GVA-PNCVTFNTLMLGCIRNNETSKVVELLHRMD 257 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 257 (260)
.+..+...+...|++++|...+++..+. +.+ .....+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4555556666666666666666655432 111 112345556666666677777766666554
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.75 E-value=8.8e-07 Score=56.37 Aligned_cols=93 Identities=11% Similarity=0.051 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCc---cchHHHHHHHhccccHHHHHHHHHHHhhcCCCcc---hhhHHHHHH
Q 044047 60 TLINGYCKTKDVEESLNLYSEMLSKGIRPTV---VTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAE---TSTYNTFID 133 (260)
Q Consensus 60 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 133 (260)
.+...+...|++++|...+++..+.... +. ..+..+..++...|++++|...|++..+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3444455555666666665555553221 11 244445555555555555555555554433 222 334444555
Q ss_pred HHHhcCcHHHHHHHHHHhhhc
Q 044047 134 GLCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~ 154 (260)
++...|++++|...++.+...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.72 E-value=3.8e-07 Score=60.80 Aligned_cols=101 Identities=10% Similarity=0.066 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhc--------C---------CCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDIN--------G---------CMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
.+..+......+.+.|++++|...|...... . -+.+...|..+..++.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567788888999999999999999888664 1 0223356666777777777777777777777
Q ss_pred HhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcC
Q 044047 82 LSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
.+.... +...|..+..++...|++++|...|++.....
T Consensus 90 l~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 665322 45666666777777777777777777766653
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.71 E-value=2.5e-07 Score=72.63 Aligned_cols=145 Identities=10% Similarity=-0.018 Sum_probs=96.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
...|..+...+.+.|++++|+..|++..+.. |+...+. .+... ... +.....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~-----------~~~~~----~~~----~~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLS-----------EKESK----ASE----SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCC-----------HHHHH----HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCC-----------hHHHH----HHH----HHHHHHHHHHHHH
Confidence 4455666666666666666666666665531 1111100 00000 000 1124678888899
Q ss_pred HHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHH
Q 044047 135 LCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKA 214 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 214 (260)
|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|+++.+... -+...+..+..++...++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988876 56788889999999999999999999999887642 2456788888888888888776
Q ss_pred HH-HHHHHH
Q 044047 215 HD-LFLDME 222 (260)
Q Consensus 215 ~~-~~~~~~ 222 (260)
.. .+..|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 53 455554
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.70 E-value=1.1e-06 Score=70.61 Aligned_cols=172 Identities=9% Similarity=-0.015 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCC----------HHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC--
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGE----------IDRARELFVSMDINGCMHNVVTYNTLINGYCKTK-- 69 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 69 (260)
++|++.++.+...+ +-+...|+.--.++...|+ ++++++.++.+.+.+ |-+..+|+.-.-.+.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 57888888888876 3467778877777777777 899999999998877 678889998888888889
Q ss_pred ChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccc-cHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhc----------
Q 044047 70 DVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIH-QVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKN---------- 138 (260)
Q Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 138 (260)
++++++..++++.+.... +..+|+.-...+.+.| .++++++.++++.+.. +.+...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999998665 7888888877888888 8899999999998876 66788888777776653
Q ss_pred ----CcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 044047 139 ----GYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 139 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (260)
+.++++++.+....... +-+...|......+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56788999998888765 6677888888777777776443
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.68 E-value=3e-07 Score=60.83 Aligned_cols=97 Identities=11% Similarity=0.049 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCC----C-cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCC-chh
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKC----E-LGIEAYSCLIDGLCKIGKLETAWELFQSLPRV----GLMP-NVV 196 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 196 (260)
++..+...+...|++++|...++....... + .....+..+...+...|++++|...+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 444455555555555555555554432210 0 01334555666666666776666666655432 1111 134
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
++..+...+...|++++|...+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566667777777788777777776654
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.67 E-value=3.9e-06 Score=67.49 Aligned_cols=172 Identities=10% Similarity=-0.035 Sum_probs=117.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCCccchHHHHHHHhcc
Q 044047 34 GEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKD----------VEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEI 103 (260)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (260)
...++|++.++.+...+ |-+..+|+.--.++...|+ ++++++.++++.+...+ +..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34567788888887776 5566677766666666666 78888888888777555 667777777777777
Q ss_pred c--cHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcC-cHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhc-------
Q 044047 104 H--QVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNG-YIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKI------- 173 (260)
Q Consensus 104 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 173 (260)
+ ++++++..++++.+.. +-+..+|+.-...+...| .++++++.+.++.+.. +-+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 7 5688888888887776 556677777766777777 7777888777777665 55666776666555542
Q ss_pred -------CCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCC
Q 044047 174 -------GKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQ 210 (260)
Q Consensus 174 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (260)
+.++++.+.+..+..... -|..+|..+-..+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCC
Confidence 345667777766665532 245666666666655555
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.67 E-value=8.5e-07 Score=59.09 Aligned_cols=64 Identities=16% Similarity=0.066 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 160 IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
...|..+..+|.+.|++++|...++...... +.+...|..+..++...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3556666777777777777777777766653 224566667777777777777777777776664
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.67 E-value=7.8e-07 Score=67.72 Aligned_cols=123 Identities=7% Similarity=-0.035 Sum_probs=98.9
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhc---------------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVL---------------KCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGL 191 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 191 (260)
.+..+...+.+.|++++|+..|++.... ..+.+...|..+..+|.+.|++++|...++++.+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4667788888999999999999887751 1134567888999999999999999999999988642
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHH
Q 044047 192 MPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVE 251 (260)
Q Consensus 192 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 251 (260)
.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.+
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999998862 3356677777788888887776654
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.64 E-value=8e-08 Score=60.38 Aligned_cols=85 Identities=9% Similarity=0.026 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHhhcC--CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHH
Q 044047 33 TGEIDRARELFVSMDING--CMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHAL 110 (260)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 110 (260)
.|++++|+..|++..+.+ -+.+..++..+..++...|++++|+..+++..+..+. +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 344555555555554432 1223444555555555555555555555555544322 3444445555555555555555
Q ss_pred HHHHHHhh
Q 044047 111 KLFDEMQH 118 (260)
Q Consensus 111 ~~~~~~~~ 118 (260)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.63 E-value=9e-08 Score=60.16 Aligned_cols=84 Identities=11% Similarity=0.055 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHhcC--CCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHH
Q 044047 69 KDVEESLNLYSEMLSKG--IRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAE 146 (260)
Q Consensus 69 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (260)
|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+.. |.+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44445555555544432 01123334444444444455555555554444443 3334444444444444455555444
Q ss_pred HHHHhhh
Q 044047 147 LFRTLRV 153 (260)
Q Consensus 147 ~~~~~~~ 153 (260)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 190
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=2e-05 Score=62.37 Aligned_cols=202 Identities=14% Similarity=0.053 Sum_probs=138.4
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 4 ASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 4 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
+..+|++..... +.++..|...+..+.+.|+++.|..+++..... |.+...|.. |....+.++. ++.+.+
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHH
Confidence 556888887763 556888998899999999999999999999887 444444332 2222111221 222222
Q ss_pred cC---------C---CCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh-cCcHHHHHHHHHH
Q 044047 84 KG---------I---RPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK-NGYIVEAAELFRT 150 (260)
Q Consensus 84 ~~---------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~ 150 (260)
.- . ......|...+....+.+..+.|..+|+.. +.. +.+...|...+..-.. .++++.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 10 0 111245667777777788999999999998 321 2233444433333222 3369999999999
Q ss_pred hhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 151 LRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
..+.- +.++..+...+....+.|+.+.|..+|+.+.+ ....|...+..-...|+.+.+..+++++.+
T Consensus 346 al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88753 44566667778888889999999999999842 467788888777788999999999988764
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.61 E-value=2.9e-07 Score=69.27 Aligned_cols=149 Identities=7% Similarity=-0.061 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHG 99 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (260)
...+..+...+.+.|++++|...|++..... |+... +...++.+++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 4556777788888888888888888876653 33221 12223333332221 11366777788
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHH-HHhcCCHHH
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDG-LCKIGKLET 178 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 178 (260)
+.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|+...... +.+...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887765 5567778888888888888888888888877654 3344555555544 234456677
Q ss_pred HHHHHHhhhhC
Q 044047 179 AWELFQSLPRV 189 (260)
Q Consensus 179 a~~~~~~~~~~ 189 (260)
+...|..+...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77788777654
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.57 E-value=5.7e-06 Score=53.49 Aligned_cols=113 Identities=9% Similarity=-0.079 Sum_probs=90.6
Q ss_pred cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHh----cCCHHH
Q 044047 103 IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCK----IGKLET 178 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 178 (260)
.+++++|+.+|++..+.| .+... +...|...+.+++|.++|++..+.+ ++..+..+...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 457888999999988877 33332 7777777788888999998888764 66777888888887 789999
Q ss_pred HHHHHHhhhhCCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 044047 179 AWELFQSLPRVGLMPNVVTYNIMIHGFCN----DGQMDKAHDLFLDMEAKGV 226 (260)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 226 (260)
|...|++..+.| +...+..|...|.. .+++++|...|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988875 56778888888887 8899999999999888763
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.56 E-value=3.7e-07 Score=68.68 Aligned_cols=148 Identities=10% Similarity=-0.004 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
..+..+...+.+.|++++|+..|++.... .|+.. .+...++.+++...+. ...+..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34566667777778888888888877664 22222 1223344444432221 13788899999
Q ss_pred HhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHH-HHhcCChHHH
Q 044047 136 CKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHG-FCNDGQMDKA 214 (260)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 214 (260)
.+.|++++|+..++...... +.+...|..+..+|...|++++|...|+.+.+... -+...+..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 56788999999999999999999999999987542 134555555555 3346778888
Q ss_pred HHHHHHHHhC
Q 044047 215 HDLFLDMEAK 224 (260)
Q Consensus 215 ~~~~~~~~~~ 224 (260)
...|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 9999998764
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.55 E-value=8.7e-07 Score=55.32 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 044047 1 MDEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSE 80 (260)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 80 (260)
+++|++.|+...+.. +.++..+..+...+...|++++|...|+...+.+ +.+...|..+..++...|++++|...|++
T Consensus 1 ~~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 1 MQAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 457888888888765 4577888888899999999999999999888775 55677888888899999999999999888
Q ss_pred HHhc
Q 044047 81 MLSK 84 (260)
Q Consensus 81 ~~~~ 84 (260)
..+.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.53 E-value=4.6e-06 Score=53.93 Aligned_cols=111 Identities=12% Similarity=0.034 Sum_probs=85.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHh----cCcHHHH
Q 044047 69 KDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCK----NGYIVEA 144 (260)
Q Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 144 (260)
+++++|++.|++..+.|. |+. . +...|...+..++|.++|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 467888888888888762 232 2 6677777777888888888887765 44567777777777 7888888
Q ss_pred HHHHHHhhhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHhhhhCC
Q 044047 145 AELFRTLRVLKCELGIEAYSCLIDGLCK----IGKLETAWELFQSLPRVG 190 (260)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 190 (260)
.++|++..+.+ ++..+..+...|.. .++.++|...++...+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888887754 56677778888887 788888888888888776
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.51 E-value=2.2e-06 Score=56.22 Aligned_cols=98 Identities=12% Similarity=0.042 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCC-C-----ch-----hhHHHHHHHHHhcCChHHHHHHHHHHHhc----
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDINGCM-H-----NV-----VTYNTLINGYCKTKDVEESLNLYSEMLSK---- 84 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 84 (260)
...+......+.+.|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 445666777788889999999999888765311 0 11 26666777777777777777777666653
Q ss_pred ---CCCCCccch----HHHHHHHhccccHHHHHHHHHHHhh
Q 044047 85 ---GIRPTVVTY----NTLFHGLFEIHQVEHALKLFDEMQH 118 (260)
Q Consensus 85 ---~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 118 (260)
... +...| .....++...|++++|+..|++..+
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 221 23344 5555555556666666666655543
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.47 E-value=1.5e-06 Score=68.45 Aligned_cols=125 Identities=14% Similarity=-0.003 Sum_probs=95.6
Q ss_pred HHHhcCcHHHHHHHHHHhhhcC-------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC-----CC-CCc-hhhHH
Q 044047 134 GLCKNGYIVEAAELFRTLRVLK-------CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV-----GL-MPN-VVTYN 199 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~ 199 (260)
.+...|++++|+.++++..... .+....+++.+...|...|++++|..++++.... |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998775321 1123457899999999999999999999886532 31 233 46789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCC-hhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 200 IMIHGFCNDGQMDKAHDLFLDMEAK-----GV-APN-CVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 200 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
.|...|...|++++|..++++..+. |. .|+ ..+...+-.++...+.+++|..+++++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642 32 222 34456677888899999999999999876
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=2.3e-07 Score=57.39 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=55.2
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKG 85 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 85 (260)
++...+..+...+...|++++|...|++..+.. |.+...|..+..++...|++++|+..+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 356677888888888999999999998888775 5677888888888889999999999998888753
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.43 E-value=5.2e-06 Score=54.45 Aligned_cols=108 Identities=9% Similarity=-0.055 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
..+......+.+.|++++|+..|++..+..... +.. + +.. . .+.+...|..+..++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~-~~~--------------~-a~~-------~-~~~~a~a~~n~g~al 67 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTM-PPE--------------E-AFD-------H-AGFDAFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CTT--------------S-CCC-------H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-cch--------------h-hhh-------h-ccchHHHHHHHHHHH
Confidence 345566667778888888888888887753221 000 0 000 0 001122555555666
Q ss_pred HhcCcHHHHHHHHHHhhhc-------CCCcCHHHH----HHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 136 CKNGYIVEAAELFRTLRVL-------KCELGIEAY----SCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
...|++++|+..++..+.. . +.+...| .....++...|++++|+..|++..+
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666666555544 3 3344555 6666666677777777777666654
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.42 E-value=3.2e-06 Score=66.57 Aligned_cols=125 Identities=10% Similarity=-0.094 Sum_probs=94.5
Q ss_pred HhccccHHHHHHHHHHHhhc-------CCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc-----C--CCcCHHHHHH
Q 044047 100 LFEIHQVEHALKLFDEMQHS-------DVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL-----K--CELGIEAYSC 165 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 165 (260)
+...|++++|+.++++..+. ..+....+++.+...|...|++++|..++++.... | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55789999999999887542 12234567899999999999999999998876532 1 1223457899
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhC-----CCC-Cc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044047 166 LIDGLCKIGKLETAWELFQSLPRV-----GLM-PN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 224 (260)
+...|...|++++|..++++..+. |.. |+ ..+.+.+..++...+.+++|+.++..+.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887532 322 22 345667777888899999999999998763
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=5.8e-07 Score=55.55 Aligned_cols=88 Identities=16% Similarity=0.020 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-------hhhH
Q 044047 161 EAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN-------CVTF 233 (260)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~~~~ 233 (260)
..+..+...+...|++++|...++...+... .+...+..+..++...|++++|...+++..+. .|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHH
Confidence 3444455555555555555555555554421 23445555555555555555555555555543 222 3334
Q ss_pred HHHHHHHHhcCchhHHHH
Q 044047 234 NTLMLGCIRNNETSKVVE 251 (260)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~ 251 (260)
..+..++...|+++.|.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 444445555555544443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.40 E-value=5e-06 Score=49.12 Aligned_cols=80 Identities=20% Similarity=0.232 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45566666777777777777777777766654 445666667777777777777777777776665322 3344444444
Q ss_pred HH
Q 044047 99 GL 100 (260)
Q Consensus 99 ~~ 100 (260)
.+
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.30 E-value=5.1e-06 Score=51.75 Aligned_cols=76 Identities=13% Similarity=-0.012 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 044047 110 LKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLP 187 (260)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (260)
+..|++..+.. +.+...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...|+...
T Consensus 5 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 5 TERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444332 3334444444455555555555555555444433 3334444445555555555555555554443
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.28 E-value=4.4e-06 Score=54.69 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=44.6
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcH----------HHHHHHHHHhhhcCCCcCHHHHHHHHHH
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYI----------VEAAELFRTLRVLKCELGIEAYSCLIDG 169 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (260)
..+.+.+++|.+.++...+.. |.+...|..+..++...+++ ++|+..|++..+.. +.+...|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 345566777777777777665 55667777777777766654 35666666555554 3345555556665
Q ss_pred HHhc
Q 044047 170 LCKI 173 (260)
Q Consensus 170 ~~~~ 173 (260)
|...
T Consensus 90 y~~l 93 (158)
T 1zu2_A 90 YTSF 93 (158)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.27 E-value=4.8e-06 Score=54.53 Aligned_cols=99 Identities=8% Similarity=0.043 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCCh----------HHHHHHHHHHHhcCCCCCccchHHHHHHHhc
Q 044047 33 TGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDV----------EESLNLYSEMLSKGIRPTVVTYNTLFHGLFE 102 (260)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (260)
.+.+++|...++...+.+ |.+...|..+..++...+++ ++|+..|++..+..+. +..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 344555555555555444 44555555555555554432 3555666555554332 34455555555554
Q ss_pred c-----------ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 103 I-----------HQVEHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 103 ~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
. |++++|+..|++..+.+ |+...|...+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~~ 134 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 4 25666666666665542 4444444444433
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.26 E-value=1.3e-05 Score=47.23 Aligned_cols=79 Identities=14% Similarity=0.259 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 55 VVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
...+..+...+...|++++|+..+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 445555666666666666666666666554322 34455555556666666666666666655543 3334444444443
Q ss_pred H
Q 044047 135 L 135 (260)
Q Consensus 135 ~ 135 (260)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.18 E-value=1.7e-05 Score=48.07 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
++..+..+..++.+.|++++|...|+...+.+ |.+...|..+..+|...|++++|+..+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566666777777777777777777766654 44556666677777777777777777766554
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.09 E-value=2.4e-05 Score=47.31 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQS 185 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (260)
.+..+..+|...|++++|+..|++..... +.+...|..+..+|...|++++|...+++
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444444444444444444433332 22233333344444444444444444433
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.03 E-value=0.00043 Score=51.96 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=58.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH
Q 044047 157 ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFN 234 (260)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 234 (260)
+.++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+.+.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5677778777777777789999999998888875 67777777788888889999999998888874 56666653
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.90 E-value=0.0006 Score=51.17 Aligned_cols=74 Identities=15% Similarity=0.009 Sum_probs=58.8
Q ss_pred CcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHH
Q 044047 122 AAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYN 199 (260)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (260)
+.+..++..+...+...|++++|...+++....+ |+...|..+...+...|++++|.+.+++....+ |...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHH
Confidence 5667777777777777799999999999888875 677777788888888999999999998888763 5655654
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.85 E-value=5.3e-05 Score=45.51 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=43.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchh-hHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVV-TYNTLINGYCKTKDVEESLNLYSEMLSKG 85 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 85 (260)
....+.+.|++++|...++.+.+.. +.+.. .+..+..++...|++++|+..|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4556667788888888888877665 44566 77777788888888888888888877753
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.70 E-value=0.00056 Score=40.61 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=48.2
Q ss_pred CccHHHHHHHHHHHhccCC---HHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044047 17 RPNAFVYSTLIDGFCLTGE---IDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKG 85 (260)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 85 (260)
+.++..+..+..++...++ .++|..++++..+.+ |.+......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4466667777776654443 677788887777766 5667777777777778888888888888877753
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.69 E-value=0.00022 Score=42.70 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 128 YNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
+..+..++...|++++|...|+...
T Consensus 38 ~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 38 YYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333344444443333333
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.63 E-value=0.00028 Score=54.74 Aligned_cols=87 Identities=8% Similarity=-0.101 Sum_probs=65.1
Q ss_pred hcCcHHHHHHHHHHhhhcC---C----CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC-----CC-CCc-hhhHHHHH
Q 044047 137 KNGYIVEAAELFRTLRVLK---C----ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV-----GL-MPN-VVTYNIMI 202 (260)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~ 202 (260)
..|++++|+.++++..... . +....+++.+..+|...|++++|..++++.... |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899999888765321 1 122457888999999999999999999886532 31 233 46788999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 044047 203 HGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 203 ~~~~~~g~~~~a~~~~~~~~~ 223 (260)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.61 E-value=0.00038 Score=54.02 Aligned_cols=87 Identities=5% Similarity=-0.181 Sum_probs=67.1
Q ss_pred ccccHHHHHHHHHHHhhc-------CCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc-----C--CCcCHHHHHHHH
Q 044047 102 EIHQVEHALKLFDEMQHS-------DVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL-----K--CELGIEAYSCLI 167 (260)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 167 (260)
..|++++|+.++++..+. ..+....+++.+..+|...|++++|+.++++.... | .+....+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356789999999886542 12223567899999999999999999999887532 2 122345789999
Q ss_pred HHHHhcCCHHHHHHHHHhhhh
Q 044047 168 DGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~ 188 (260)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.59 E-value=0.00046 Score=53.54 Aligned_cols=93 Identities=13% Similarity=-0.009 Sum_probs=71.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhcC---C----CcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC-----CC-CCc-hh
Q 044047 131 FIDGLCKNGYIVEAAELFRTLRVLK---C----ELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV-----GL-MPN-VV 196 (260)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~ 196 (260)
.+..+...|++++|+.++++..... . +....+++.+...|...|++++|..+++++... |. .|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999998876432 1 123457889999999999999999999887532 21 233 46
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
+++.|...|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 789999999999999999999998764
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.55 E-value=0.0007 Score=52.56 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhCC---CCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCC-hhh
Q 044047 167 IDGLCKIGKLETAWELFQSLPRVG---LMPN----VVTYNIMIHGFCNDGQMDKAHDLFLDMEAK-----G-VAPN-CVT 232 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~ 232 (260)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+...|...|++++|+.++++.++. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999886531 1122 467899999999999999999999988642 2 1222 456
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 233 FNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998754
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.55 E-value=0.0046 Score=52.07 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=101.4
Q ss_pred HHHhccCCHHHHHH-HHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccH
Q 044047 28 DGFCLTGEIDRARE-LFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQV 106 (260)
Q Consensus 28 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (260)
......+++++|.+ ++..+ ++......++..+.+.|.++.|+++.+.- ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCH
Confidence 34445677887766 44211 11223377777788888888887665321 1113345567888
Q ss_pred HHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 044047 107 EHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSL 186 (260)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (260)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8888875443 3556888888888888888888888887653 334555566677777777666666
Q ss_pred hhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 187 PRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
...| -++....++.+.|++++|.+++.++..
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 6543 234444556678888888888776543
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.54 E-value=0.0059 Score=51.42 Aligned_cols=129 Identities=8% Similarity=0.054 Sum_probs=72.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcc
Q 044047 24 STLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEI 103 (260)
Q Consensus 24 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (260)
..++..+.+.|.+++|.++.+. | ..-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~-----~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------Q-----DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------H-----HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------c-----chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5566666677777777655421 1 11133345668888887775432 2567788888888888
Q ss_pred ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044047 104 HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELF 183 (260)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 183 (260)
++++.|.+.|.++.. |..+...+...|+.+...++.+.....+ -++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 888888888877632 3345555555666665554444433322 1122233344455555555544
Q ss_pred Hh
Q 044047 184 QS 185 (260)
Q Consensus 184 ~~ 185 (260)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.44 E-value=0.0086 Score=43.32 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhhcCCC-cCHHHHHHHHHHHHhc-----CCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhc-CChHH
Q 044047 141 IVEAAELFRTLRVLKCE-LGIEAYSCLIDGLCKI-----GKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCND-GQMDK 213 (260)
Q Consensus 141 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 213 (260)
...|...+++..+.... .+...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 56677777777766411 1356889999999984 99999999999999865322477788888888884 99999
Q ss_pred HHHHHHHHHhCCCC--CChhh
Q 044047 214 AHDLFLDMEAKGVA--PNCVT 232 (260)
Q Consensus 214 a~~~~~~~~~~~~~--p~~~~ 232 (260)
+.+.+++.+..... |+...
T Consensus 259 a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHcCCCCCCCChhH
Confidence 99999999987544 55443
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.42 E-value=0.017 Score=41.89 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHHhhcCCC-cchhhHHHHHHHHHhc-----CcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhc-CCHH
Q 044047 105 QVEHALKLFDEMQHSDVA-AETSTYNTFIDGLCKN-----GYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKI-GKLE 177 (260)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 177 (260)
....|...+++..+.... .+...|..+...|... |+.++|.+.|++....+..-+..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 356778888888776511 1467889999999984 99999999999999876323477778888888884 9999
Q ss_pred HHHHHHHhhhhCCCC--CchhhHH
Q 044047 178 TAWELFQSLPRVGLM--PNVVTYN 199 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~--~~~~~~~ 199 (260)
.+.+.+++....... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 999999999987655 5544333
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.40 E-value=0.0029 Score=37.43 Aligned_cols=68 Identities=9% Similarity=0.039 Sum_probs=43.9
Q ss_pred CCchhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcC
Q 044047 52 MHNVVTYNTLINGYCKTKD---VEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSD 120 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (260)
+.++..+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4556666666666654443 56777777777765433 45566666667777777777777777776654
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.40 E-value=0.0029 Score=41.03 Aligned_cols=83 Identities=16% Similarity=0.092 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcC---cHHHHHHHHHHhhhcCCCc--CHHHHHHHHHHHHhcCCHHHH
Q 044047 105 QVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNG---YIVEAAELFRTLRVLKCEL--GIEAYSCLIDGLCKIGKLETA 179 (260)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 179 (260)
....+.+-|......+ +++..+...+.-++++.+ +..+++.+++.+.+.. .| ....+..+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3444455555444444 345555555555555555 4445666666655543 12 233444455555666666666
Q ss_pred HHHHHhhhhC
Q 044047 180 WELFQSLPRV 189 (260)
Q Consensus 180 ~~~~~~~~~~ 189 (260)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666665553
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.39 E-value=0.0026 Score=38.51 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=50.0
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcC------CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVSMDING------CMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
.++..+..+...+.+.|+++.|...|+...+.. -.+....+..+..++.+.|+++.|+..+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456666778888888888888888888775531 1345667778888888888888888888888765
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.30 E-value=0.0045 Score=40.15 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhccC---CHHHHHHHHHHHhhcCCCC--chhhHHHHHHHHHhcCChHHHHHHH
Q 044047 4 ASRLLDLMIQRGVRPNAFVYSTLIDGFCLTG---EIDRARELFVSMDINGCMH--NVVTYNTLINGYCKTKDVEESLNLY 78 (260)
Q Consensus 4 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 78 (260)
+.+-|....+.|. ++..+...+..++++.+ ++++++.+++...+.+ .| ....+-.+.-++.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444442 45555555666666655 4556666666666553 22 3444555555566666666666666
Q ss_pred HHHHhc
Q 044047 79 SEMLSK 84 (260)
Q Consensus 79 ~~~~~~ 84 (260)
+.+.+.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666664
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.017 Score=38.46 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=61.0
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccH
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQV 106 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (260)
+....+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34445667777777766554 2456677777777777777777777766432 33444455556666
Q ss_pred HHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHh
Q 044047 107 EHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTL 151 (260)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (260)
+...++-+.....| -++....++...|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 65555544444443 2344445555667777776666543
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.22 E-value=0.009 Score=36.09 Aligned_cols=63 Identities=10% Similarity=-0.045 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHhhhcC------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 126 STYNTFIDGLCKNGYIVEAAELFRTLRVLK------CELGIEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
..+..+...+...+++..|..+++...... ..+....+..+..++.+.|+++.|...++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344445555555555555555555443321 012233444444444444444444444444443
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.02 E-value=0.013 Score=37.74 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC
Q 044047 139 GYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLM 192 (260)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 192 (260)
+++++|.++|+.+...+-.. ...|......-.+.|++..|.+++......+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555554332222 445555555555666666666666666555443
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.035 Score=36.95 Aligned_cols=130 Identities=12% Similarity=0.158 Sum_probs=89.4
Q ss_pred HHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH
Q 044047 97 FHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL 176 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (260)
.......|+++.|.++.+.+ .+...|..+.......|+++-|.+.|..... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34556789999998887664 4677899999999999999999999987653 34566667778888
Q ss_pred HHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 177 ETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
+...++-+.....| -++.....+...|+++++.++|.+.-. .|.. .......|..+.|.++..++
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 88777766665543 245555667778999999998855332 1211 11122356666777776554
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.95 E-value=0.03 Score=35.36 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 044047 195 VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDERN 260 (260)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 260 (260)
....+..+..+..+|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++++.-++|
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344555566666677777777777665432 45666666677777777777777777777665554
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.029 Score=46.56 Aligned_cols=127 Identities=9% Similarity=0.032 Sum_probs=78.8
Q ss_pred HHHHHHhcccc-HHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCc-HHHHHHHHHHhhhc------CCC-cC------
Q 044047 95 TLFHGLFEIHQ-VEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGY-IVEAAELFRTLRVL------KCE-LG------ 159 (260)
Q Consensus 95 ~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~-~~------ 159 (260)
.+++.+...++ .+.|..+++++.+.....+......++..+...++ --+|.+++.+..+. ..+ .+
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34555555666 58899999999887522222222233333333332 23455555544321 111 11
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 160 ----IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 160 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
......=+..+...|+++.|+.+-++..... +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1122233455678899999999999988863 2347899999999999999999999988763
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.71 E-value=0.054 Score=34.89 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=37.2
Q ss_pred cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC
Q 044047 103 IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLK 155 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (260)
.++.++|.++|+.+.+.+-.. ...|......-.+.|+...|.+++......+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 367778888888876553222 5666666666777888888888888887765
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.041 Score=45.68 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCc-HHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHhhhhC------CCCC-ch---
Q 044047 128 YNTFIDGLCKNGY-IVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK-LETAWELFQSLPRV------GLMP-NV--- 195 (260)
Q Consensus 128 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~--- 195 (260)
...++..+...++ .+.|..+++++.......+......++..+...++ --+|.+++.+..+. ...+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455566666666 57799999998876422222222233333333332 22455555443321 1111 11
Q ss_pred -------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 196 -------VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 196 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
.....-++-+...|+++-|+.+.++.... .+-+..+|..|..+|...|+++.|+-.++-+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222345566799999999999999886 3446889999999999999999999887754
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.48 E-value=0.07 Score=33.32 Aligned_cols=65 Identities=11% Similarity=-0.049 Sum_probs=31.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHH---HHHHHHhhhhCCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 158 LGIEAYSCLIDGLCKIGKLET---AWELFQSLPRVGLMP--NVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
++..+-..+..++.++.+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444445555555544433 555555554432 11 223333444455556666666666655555
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.46 E-value=0.053 Score=33.83 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHH---HHHHHHHhhhcCCC-cCHHHHHHHHHHHHhcCCHHHH
Q 044047 104 HQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVE---AAELFRTLRVLKCE-LGIEAYSCLIDGLCKIGKLETA 179 (260)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 179 (260)
.....+.+-|......| .++..+-..+.-++.+..+... ++.+++.+...+.+ -.......+.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444555555544444 3555566666666666665555 66777766654311 1333445566677777777777
Q ss_pred HHHHHhhhhC
Q 044047 180 WELFQSLPRV 189 (260)
Q Consensus 180 ~~~~~~~~~~ 189 (260)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777764
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.05 E-value=0.039 Score=42.24 Aligned_cols=74 Identities=4% Similarity=-0.011 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHh-----hcCCCcchhhHHHH
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQ-----HSDVAAETSTYNTF 131 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 131 (260)
+...++..+...|++++++..+..+....+ .+...+..+|.++.+.|+..+|+..|+.+. +.|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 455677778888999999888888877633 367788889999999999999998888764 35888877665433
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.98 E-value=0.15 Score=32.29 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=76.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHH
Q 044047 33 TGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKL 112 (260)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 112 (260)
.|.+++..++..+.... .+..-||-++--....-+-+-..++++..-+ -.|. ..+|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHH
Confidence 45666666666665543 2344444444444444444444444444322 1121 234455555555
Q ss_pred HHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 044047 113 FDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGL 191 (260)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 191 (260)
+-.+- .+...+...+..+...|..+...+++..+... .+|++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44431 23345566667777777777777777775432 266677777777777777777777777777777664
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.97 E-value=0.56 Score=40.12 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=38.0
Q ss_pred HHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchh--hHHHHHHHHHhcCChH
Q 044047 135 LCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVV--TYNIMIHGFCNDGQMD 212 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 212 (260)
+.-.|+.+....++..+.... ..+..-...+.-++...|+.+.+..+++.+.... .|... .-..+..+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 444555555555555544321 1111122222233335566666666665555421 11111 1112333455556655
Q ss_pred HHHHHHHHHHh
Q 044047 213 KAHDLFLDMEA 223 (260)
Q Consensus 213 ~a~~~~~~~~~ 223 (260)
....++..+.+
T Consensus 578 aIq~LL~~~~~ 588 (963)
T 4ady_A 578 AVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 55555555554
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.67 E-value=0.92 Score=40.14 Aligned_cols=187 Identities=11% Similarity=0.105 Sum_probs=112.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhc----C---------------
Q 044047 60 TLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS----D--------------- 120 (260)
Q Consensus 60 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--------------- 120 (260)
.++..+...+..+.+.++..-. +.++..--.+..++...|++++|..+|++.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3444555556655554433221 123333345667778888888888888764210 0
Q ss_pred ---CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC
Q 044047 121 ---VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGI----EAYSCLIDGLCKIGKLETAWELFQSLPRVGLMP 193 (260)
Q Consensus 121 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 193 (260)
...-..-|..++..+.+.+.++.+.++-+...+...+.+. ..|..+.+.+...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 0011234677888888899999988887766654322222 26788899999999999999999877765433
Q ss_pred chhhHHHHHHHHHhcCCh------------HHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 044047 194 NVVTYNIMIHGFCNDGQM------------DKAHDLFLDMEAK--GVAPNCVTFNTLMLGCIRNNETSKVVELL 253 (260)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~------------~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (260)
......|+..++..|.. ++..+++...... .+...+.-|..|-.-+...|++.+|-.++
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 45667777777765554 3444444332211 11212233555556666778887765543
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.56 E-value=1.2e-06 Score=67.26 Aligned_cols=182 Identities=12% Similarity=0.121 Sum_probs=121.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 044047 54 NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFID 133 (260)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (260)
.+..|..+..+..+.+...+|++.|-+ . -|+..|..++....+.|.+++.++++...++..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 456788888888888888777765522 1 2677888889999999999998888887776533 3344558888
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC--------------------CCC
Q 044047 134 GLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVG--------------------LMP 193 (260)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~ 193 (260)
+|++.++..+..+++. .|+..-...+..-|...|.++.|.-+|..+.+.. -.-
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8988888766444332 4555555667777777777777766665543220 012
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHH
Q 044047 194 NVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHR 255 (260)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (260)
++.||..+-.+|...+++.-|.-.--.+.- .|+ ....++..|-..|.+++.+.+++.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 566788888888888877776655544442 122 223466667777777777766654
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.33 E-value=0.14 Score=39.27 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=25.0
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSL 186 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (260)
..+...|++.++...+..+.... +.+...+..++.++.+.|+..+|.+.|+.+
T Consensus 179 ~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 179 EAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344455555544444444333 344444555555555555555555554443
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.8 Score=35.78 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHhhhh----CCCCCc--hhh
Q 044047 129 NTFIDGLCKNGYIVEAAELFRTLRVLKCE-LG----IEAYSCLIDGLCKIGKLETAWELFQSLPR----VGLMPN--VVT 197 (260)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~ 197 (260)
..|...+...|++.+|..++..+...-.. .+ ...+...++.|...+++..|..++..+.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555556666666666666555321111 11 22444455556666666666666555421 111111 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 044047 198 YNIMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 198 ~~~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
+...+..+...+++.+|...|.++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444555555555555555444
No 243
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.23 E-value=1.1e-05 Score=62.07 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH 98 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 98 (260)
.+.+|..|..+..+.+++.+|++.|- + ..|+..|..++....+.|.+++-++.+...++. .+ ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~k-e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-AR-ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CC-STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hc-ccccHHHHHH
Confidence 34567777788777777777765542 2 236667888888888888888888888666554 22 4555567888
Q ss_pred HHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHH
Q 044047 99 GLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRT 150 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (260)
+|++.++..+..+++. .|+..-...+..-|...|.++.|.-+|..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence 8888877655433321 23444444555555555555555554443
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.22 E-value=1.5 Score=38.80 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=95.3
Q ss_pred HHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhc----C----------------
Q 044047 96 LFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVL----K---------------- 155 (260)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---------------- 155 (260)
++..+...+..+.+..+..- .+.++..-..+..++...|++++|...|++.-.. .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 33444455555555443332 2334444456778889999999999999875210 0
Q ss_pred --CCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 044047 156 --CELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN----VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN 229 (260)
Q Consensus 156 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 229 (260)
...-..-|..++..+.+.+.++.+.++-....+....-+ ...|..+.+.+...|++++|...+..+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 011123466777888888888888888776655422111 12578888999999999999999888876533 3
Q ss_pred hhhHHHHHHHHHhcCchhHHH
Q 044047 230 CVTFNTLMLGCIRNNETSKVV 250 (260)
Q Consensus 230 ~~~~~~l~~~~~~~~~~~~a~ 250 (260)
...+..|+...+..|..+.-.
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhh
Confidence 566777877777777665543
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.70 E-value=1.2 Score=34.83 Aligned_cols=245 Identities=11% Similarity=0.067 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHc-----CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhc-CCCCchhhHHHHHH----HHHhcCChH
Q 044047 3 EASRLLDLMIQR-----GVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDIN-GCMHNVVTYNTLIN----GYCKTKDVE 72 (260)
Q Consensus 3 ~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~~~~~ 72 (260)
+|++.+-.+.+. +...+......++..|...|+++...+.+..+... |..+ .....+++ ........+
T Consensus 34 ~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~~~~d 111 (445)
T 4b4t_P 34 SALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSSKSLD 111 (445)
T ss_dssp HHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcCCchh
Confidence 455555444432 23445677888899999999999988877766443 3222 22233333 222233322
Q ss_pred HH--HHHHHHHHhcCCCCCccc---------hHHHHHHHhccccHHHHHHHHHHHhhc--CCCc---chhhHHHHHHHHH
Q 044047 73 ES--LNLYSEMLSKGIRPTVVT---------YNTLFHGLFEIHQVEHALKLFDEMQHS--DVAA---ETSTYNTFIDGLC 136 (260)
Q Consensus 73 ~a--~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~ 136 (260)
.. ..+.+.+. .+. +..+ ...|...+...|++.+|..++..+... +... -...+...++.|.
T Consensus 112 ~~~~~~~i~~l~--~vt-e~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 112 LNTRISVIETIR--VVT-ENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp HHHHHHHHHCCS--SSS-SCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHh-ccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 21 12221111 111 1122 245778899999999999999998532 2111 1356777888999
Q ss_pred hcCcHHHHHHHHHHhhh----cCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC-CCCchhhHH----HHHHHH
Q 044047 137 KNGYIVEAAELFRTLRV----LKCELG--IEAYSCLIDGLCKIGKLETAWELFQSLPRVG-LMPNVVTYN----IMIHGF 205 (260)
Q Consensus 137 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~----~l~~~~ 205 (260)
..+++..|..+++++.. ...+|+ ...+...+..+...+++.+|.+.|.++.... ...+...+. .++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999988642 111222 2346677888888999999988887765421 111222222 122222
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--CchhHHHHH
Q 044047 206 CNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRN--NETSKVVEL 252 (260)
Q Consensus 206 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~ 252 (260)
.-.+....-..++........-++...+..++.+|... .+|+.+.+.
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~ 317 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKT 317 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHH
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHH
Confidence 22222222223333332222234667788888887653 334444433
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.51 E-value=0.66 Score=27.55 Aligned_cols=49 Identities=8% Similarity=0.017 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 140 YIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
+.-+..+-++.+.....-|++.+..+.+++|.+.+++..|.++++.++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555555443
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.02 E-value=0.81 Score=27.18 Aligned_cols=62 Identities=8% Similarity=0.077 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHH
Q 044047 35 EIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLF 97 (260)
Q Consensus 35 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 97 (260)
+.=+..+-++.+...+.-|++....+.+++|-+.+|+..|.++++-.+.. ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 44456666677777777777777777777777777777777777776654 222333455444
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.00 E-value=2.4 Score=32.49 Aligned_cols=27 Identities=11% Similarity=-0.091 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
.+...+...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677778888888888777777654
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.60 E-value=1.4 Score=28.92 Aligned_cols=57 Identities=9% Similarity=0.034 Sum_probs=25.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcC-CCCch-------hhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 25 TLIDGFCLTGEIDRARELFVSMDING-CMHNV-------VTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 25 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
.-+..+...|.++.|+-+.+.+.... .+|+. .++..+..++...+++..|...|++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33444555555555555554433210 01221 13344445555555555555555554
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.27 E-value=1.9 Score=33.43 Aligned_cols=97 Identities=13% Similarity=-0.005 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCccchHHHHHHHhccccHHHHHHHHHHHhhc---CCCcchh--hH
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLSKG--IRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS---DVAAETS--TY 128 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~--~~ 128 (260)
.++..+...|.+.|+++.|.+.+.++.... ...-...+-..++.+...+++..+...+.+.... +..++.. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356778888888899999988888887642 2223456667777888888888888888876432 2122211 11
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 129 NTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
..-+..+...+++..|.+.|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 112223345678888877776654
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.21 E-value=2.4 Score=32.96 Aligned_cols=98 Identities=11% Similarity=-0.063 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhc--CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCccc--h
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDIN--GCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK---GIRPTVVT--Y 93 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 93 (260)
.+...+...+.+.|+++.|.+.+.++... +...-...+-..++.+...+++..+...+.+.... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677899999999999999999999764 32344667888899999999999999999987643 22222111 0
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhh
Q 044047 94 NTLFHGLFEIHQVEHALKLFDEMQH 118 (260)
Q Consensus 94 ~~l~~~~~~~~~~~~a~~~~~~~~~ 118 (260)
..-+..+...+++..|.+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1111223456788888888776543
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.12 E-value=1.4 Score=27.77 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=21.3
Q ss_pred HHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 179 AWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
..+-++.+....+.|++......+++|.+.+++..|.++|+-.+.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333344444444444555555555555555555555555544443
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.76 E-value=3.5 Score=31.57 Aligned_cols=167 Identities=9% Similarity=-0.028 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhc----CCCCchhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCccch-
Q 044047 20 AFVYSTLIDGFCLTGEIDRARELFVSMDIN----GCMHNVVTYNTLINGYCKTK-DVEESLNLYSEMLSKGIRPTVVTY- 93 (260)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~- 93 (260)
......|...|.+.|+.++..+++.....- +..-.......++..+.... ..+.-.++..+..+..-. +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 345667889999999999999988876432 11123445667777776653 344444444444432111 22333
Q ss_pred -----HHHHHHHhccccHHHHHHHHHHHhhcCCCcc-----hhhHHHHHHHHHhcCcHHHHHHHHHHhhhcC--CCcCHH
Q 044047 94 -----NTLFHGLFEIHQVEHALKLFDEMQHSDVAAE-----TSTYNTFIDGLCKNGYIVEAAELFRTLRVLK--CELGIE 161 (260)
Q Consensus 94 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 161 (260)
..++..|...|++.+|..++..+.+.--..| ...+..-+..|...+++..+...+....... +.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2578889999999999999888865311111 3345566777888999999998887765322 224443
Q ss_pred HHHH----HHHHHH-hcCCHHHHHHHHHhhh
Q 044047 162 AYSC----LIDGLC-KIGKLETAWELFQSLP 187 (260)
Q Consensus 162 ~~~~----l~~~~~-~~~~~~~a~~~~~~~~ 187 (260)
.... -...+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3222 234455 7889999888776653
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.52 E-value=1.7 Score=27.39 Aligned_cols=66 Identities=6% Similarity=-0.034 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHHhccCC---HHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 18 PNAFVYSTLIDGFCLTGE---IDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
|++.+--.+..++++..+ ..+++.+++.+.+.+.......+-.+.-++.+.|+++.|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344433334444444332 234455555554443112233444444555555555555555555554
No 255
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=91.21 E-value=2.2 Score=29.06 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHhcCCCCC-ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCc
Q 044047 69 KDVEESLNLYSEMLSKGIRPT-VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAA 123 (260)
Q Consensus 69 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 123 (260)
++..++..+|..|...|+-.. ..-|......+...|++++|..+|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666665544322 3344555555666666666666666665555444
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.63 E-value=2.1 Score=27.01 Aligned_cols=64 Identities=9% Similarity=0.177 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 71 VEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 71 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
.-+..+-+..+....+.|++.+....+++|.+.+++..|.++|+-++.+- .+...+|..+++-.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHHH
Confidence 34555666666666677777777777777777777777777777766543 33344566665543
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.53 E-value=1.7 Score=25.72 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHH
Q 044047 34 GEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLF 113 (260)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 113 (260)
...++|..+-+-+...+. ...+--+-+..+...|++++|..+.+.+ ..||...|..|. -.+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 345666666655555441 2222222334556667777766555433 245666555543 33566666666666
Q ss_pred HHHhhcC
Q 044047 114 DEMQHSD 120 (260)
Q Consensus 114 ~~~~~~~ 120 (260)
..+..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6666555
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.38 E-value=1.9 Score=30.90 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=70.4
Q ss_pred HHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC--cCHHHHHHHHHHHHhcCC
Q 044047 98 HGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE--LGIEAYSCLIDGLCKIGK 175 (260)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 175 (260)
....+.|++++++.....-.+.. |.|...-..++..+|-.|+++.|.+-++...+.... +....|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 34567788888888888777775 677777788888888889999988888877765421 2222344444331
Q ss_pred HHHHHHHHHhhhhCCCCC-----chhhHHHHHHHHH--hcCChHHHHHHHHHHHhC
Q 044047 176 LETAWELFQSLPRVGLMP-----NVVTYNIMIHGFC--NDGQMDKAHDLFLDMEAK 224 (260)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 224 (260)
..=.+...-+-.| ...-...++.+.. ..|+.++|.++-..+.+.
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1111221111111 1222334444443 468888888888877653
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.24 E-value=1.8 Score=25.64 Aligned_cols=86 Identities=9% Similarity=0.104 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHH
Q 044047 34 GEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLF 113 (260)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 113 (260)
...++|..+-+-+...+. ...+--+-+..+...|++++|..+.+.+ ..||...|..|. -.+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 455666666666655541 2222222334556667777777665443 256666665553 33566666666666
Q ss_pred HHHhhcCCCcchhhH
Q 044047 114 DEMQHSDVAAETSTY 128 (260)
Q Consensus 114 ~~~~~~~~~~~~~~~ 128 (260)
..+..+| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6666655 3433333
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.68 E-value=3.7 Score=29.43 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=37.4
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 29 GFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
.+.+.|++++++.....-.+.. |.|...-..+++.+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4456677777777776666655 566666667777777777777777777666554
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.15 E-value=2.3 Score=25.20 Aligned_cols=84 Identities=10% Similarity=0.037 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|..|-+.+...+. ...+--+-+..+...|++++|..+.+... .||...|-.+-. .+.|-.+++...+.++
T Consensus 23 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 23 EEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 467778888877753 23233334456778999999988765443 688888877655 4778888888888788
Q ss_pred HhcCCCCCccchH
Q 044047 82 LSKGIRPTVVTYN 94 (260)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (260)
..+|. |....|.
T Consensus 95 a~sg~-p~~q~Fa 106 (115)
T 2uwj_G 95 GGSSD-PALADFA 106 (115)
T ss_dssp HTCSS-HHHHHHH
T ss_pred HhCCC-HHHHHHH
Confidence 77653 3444443
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.87 E-value=2.4 Score=25.13 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 2 DEASRLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
++|..|-+.+...+. ...+--+-+..+...|++++|..+.+... .||...|-.+.. .+.|-.+++...+.++
T Consensus 24 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 24 EEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 467778888887763 23333334556778999999998876544 688888877765 4678888888888777
Q ss_pred HhcCCCCCccch
Q 044047 82 LSKGIRPTVVTY 93 (260)
Q Consensus 82 ~~~~~~~~~~~~ 93 (260)
..+|. |....|
T Consensus 96 a~sg~-p~~q~F 106 (116)
T 2p58_C 96 ARSQD-PRIQTF 106 (116)
T ss_dssp TTCCC-HHHHHH
T ss_pred HhCCC-HHHHHH
Confidence 76653 344444
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.29 E-value=6.4 Score=29.32 Aligned_cols=26 Identities=15% Similarity=-0.024 Sum_probs=17.3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044047 158 LGIEAYSCLIDGLCKIGKLETAWELF 183 (260)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 183 (260)
-++.....+...|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35566666677777777777776665
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.89 E-value=3.6 Score=25.91 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=32.0
Q ss_pred CcCHHHHHHHHHHHHhcCCH---HHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 157 ELGIEAYSCLIDGLCKIGKL---ETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
.|++.+--.+..++.++.+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444444444432 24555555554433111233444445555556666666666655555
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.86 E-value=6.6 Score=28.96 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHH----HHHHHHHHhhcCCCcchhhHHHHH
Q 044047 57 TYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEH----ALKLFDEMQHSDVAAETSTYNTFI 132 (260)
Q Consensus 57 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~ 132 (260)
.|.++..-|.+++++++|++++..-.. .+.+.|+... +.-+++.+.+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345555556666666666666544221 1112233222 223344445555566655555555
Q ss_pred HHHHhcCcHH-HHHHHHHHhhh----cC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044047 133 DGLCKNGYIV-EAAELFRTLRV----LK--CELGIEAYSCLIDGLCKIGKLETAWELFQ 184 (260)
Q Consensus 133 ~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 184 (260)
..+.....-+ .-.++++.+.. .+ ..-++.....+...|.+.|++.+|...|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5554422111 11222222221 11 12366777777788888888877777664
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.63 E-value=4.4 Score=26.65 Aligned_cols=22 Identities=9% Similarity=0.136 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh
Q 044047 165 CLIDGLCKIGKLETAWELFQSL 186 (260)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~ 186 (260)
-+..+|.+.+++++|+.+++.+
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHCCHHHHHHHHhcC
Confidence 3445555555555555555544
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=87.36 E-value=6.1 Score=28.01 Aligned_cols=22 Identities=14% Similarity=-0.079 Sum_probs=10.2
Q ss_pred cCCHHHHHHHHHhhhhCCCCCc
Q 044047 173 IGKLETAWELFQSLPRVGLMPN 194 (260)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~ 194 (260)
.++......+++.+.+.|..++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSS
T ss_pred ccccchHHHHHHHHHHcCCCCC
Confidence 3443334445555555554443
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.31 E-value=5.3 Score=27.23 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC
Q 044047 141 IVEAAELFRTLRVLKCELG-IEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMP 193 (260)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 193 (260)
..++..+|..|...++.-. ...|......+...|++.+|.++|+.-.+.+..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4556666666655554333 3345555556666666666666666666555444
No 269
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=86.88 E-value=3.7 Score=26.94 Aligned_cols=72 Identities=8% Similarity=0.097 Sum_probs=52.5
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 044047 16 VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMH-NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTV 90 (260)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (260)
.+.|+......+...-.. +.+.++|..|..+|+-. -+..|......+-..|++.+|.++|..-++.+..|..
T Consensus 59 YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 355666555555333223 34777899998887654 4566888889999999999999999999998777654
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.74 E-value=4.5 Score=25.83 Aligned_cols=46 Identities=7% Similarity=0.010 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 38 RARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 38 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
+++.+++.+.+.+........-.+.-++.+.|++++|.+..+.+.+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444432112223333444445555555555555555544
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=86.34 E-value=5 Score=25.97 Aligned_cols=70 Identities=9% Similarity=0.037 Sum_probs=45.0
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcc
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT-VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAE 124 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 124 (260)
..|+.-....+..--.. +++..+|..|...|+-.. ..-|......+...|++++|..+|+.-++.+-.|-
T Consensus 65 knD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp TTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44555444444433222 337788888877765433 44566777777788888888888888777765653
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.31 E-value=16 Score=31.72 Aligned_cols=153 Identities=14% Similarity=0.055 Sum_probs=65.6
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCccchHHHHH--HHhccccHHHHHHHHHHHhhcCCCcchhhH--HHHHHHHHhcCc
Q 044047 65 YCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFH--GLFEIHQVEHALKLFDEMQHSDVAAETSTY--NTFIDGLCKNGY 140 (260)
Q Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~ 140 (260)
+...|+.+....++..+.+.. +..+...+.. ++...|+.+.+..+.+.+.... .|....- ..+.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 334455555555555544421 2222222222 2234555555555555554432 2222111 123334555666
Q ss_pred HHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCCh-HHHHHHHH
Q 044047 141 IVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQM-DKAHDLFL 219 (260)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 219 (260)
.....+++..+.... ..+..-...+.-+....|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++.+++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 655555666555432 2223323333333444555555555555554432 23332222233333333332 34555555
Q ss_pred HHHh
Q 044047 220 DMEA 223 (260)
Q Consensus 220 ~~~~ 223 (260)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 5543
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=85.39 E-value=7.7 Score=27.90 Aligned_cols=143 Identities=9% Similarity=0.006 Sum_probs=61.2
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc--hHHHHHHHhccc
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVT--YNTLFHGLFEIH 104 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 104 (260)
+...+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+. .+.+.|..++... -.+.+...+..|
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 4444556777655555443 32222221223444455566654333 3334455444321 122334444556
Q ss_pred cHHHHHHHHHHHhhcCCCcch---hhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc-CHHHHHHHHHHHHhcCCHHHHH
Q 044047 105 QVEHALKLFDEMQHSDVAAET---STYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL-GIEAYSCLIDGLCKIGKLETAW 180 (260)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 180 (260)
+.+-+..+++. |..++. ..+...+...+..|+.+-+..+++ .+..+ +...-.+.+...+..|+.+-+.
T Consensus 107 ~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 107 NMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS----EIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp CHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHT----TSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCccccccCCccHHHHHHHcChHHHHH
Confidence 66544444443 322221 111233344445566554443333 22111 1101122333445566766665
Q ss_pred HHHHh
Q 044047 181 ELFQS 185 (260)
Q Consensus 181 ~~~~~ 185 (260)
-+++.
T Consensus 179 ~Ll~~ 183 (285)
T 3kea_A 179 LLLDY 183 (285)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55554
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.93 E-value=8.3 Score=27.28 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=10.2
Q ss_pred HHHHHhccCCHHHHHHHHH
Q 044047 26 LIDGFCLTGEIDRARELFV 44 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~ 44 (260)
.+...++.|+.+....+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444556666665554443
No 275
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.82 E-value=6.5 Score=25.12 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=26.9
Q ss_pred cchhhHHHHHHHHHhcCcHH---HHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 044047 123 AETSTYNTFIDGLCKNGYIV---EAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
|+..+-..+.-++.+..+.. +++.+++.+...+..-.......+.-++.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33333334444444433322 3444444444332111222333344444455555555555554444
No 276
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.24 E-value=18 Score=29.74 Aligned_cols=115 Identities=7% Similarity=-0.052 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHhhhcCCCcCHHHH----HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHH
Q 044047 140 YIVEAAELFRTLRVLKCELGIEAY----SCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAH 215 (260)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 215 (260)
+.+.|...+....... ..+.... ..+.......+...++...+....... ++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5677777776665432 2233222 222223333342444555555443322 33333444555556678888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 216 DLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 216 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
..|..|.... .....-.--+..++...|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888776531 11333344566677778888888888877653
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=82.93 E-value=13 Score=28.02 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQ--MDKAHDLFLDMEAKGVAPNCVTFNTLMLG 239 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 239 (260)
....++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+....++..+...|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577888889999999999999888642211 23344455555555433 45677888888877765554444444443
Q ss_pred HHhcC----chhHHHHHHHHHh
Q 044047 240 CIRNN----ETSKVVELLHRMD 257 (260)
Q Consensus 240 ~~~~~----~~~~a~~~~~~m~ 257 (260)
+.... |...|..++.++.
T Consensus 298 l~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHhccHhhcccccHHHHHHHHH
Confidence 33322 3445555555543
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=82.15 E-value=5.6 Score=27.59 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=51.7
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 044047 16 VRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMH-NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPT 89 (260)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 89 (260)
.+-|+......+... .. .+.+.++|..|...|+-. -...|......+-..|++.+|..+|+.-++.+-.|-
T Consensus 113 YknD~RyLklWl~Ya-~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 113 YKDDVRYLRIWMQYV-NY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp GTTCHHHHHHHHHHH-TT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred ccCCHHHHHHHHHHH-Hc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 455666555444432 22 246778999998887654 456788888999999999999999999888866663
No 279
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=80.56 E-value=10 Score=25.21 Aligned_cols=23 Identities=9% Similarity=-0.211 Sum_probs=12.2
Q ss_pred hHHHHHHHhccccHHHHHHHHHH
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDE 115 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~ 115 (260)
++.+...+.+.|+.++|+..+..
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHhhhHhhh
Confidence 34444555555666666555543
No 280
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=80.30 E-value=12 Score=25.78 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=8.6
Q ss_pred HhccCCHHHHHHHHHHHh
Q 044047 30 FCLTGEIDRARELFVSMD 47 (260)
Q Consensus 30 ~~~~~~~~~a~~~~~~~~ 47 (260)
|.+.|.+++|.++++...
T Consensus 124 Ciek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 124 CIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHTTCHHHHHHHHHHHS
T ss_pred HHHhcchHHHHHHHHHHh
Confidence 444445555555544443
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=80.15 E-value=8.2 Score=26.47 Aligned_cols=203 Identities=13% Similarity=0.063 Sum_probs=85.2
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCchh--hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc---hHHHHHHHhcc
Q 044047 29 GFCLTGEIDRARELFVSMDINGCMHNVV--TYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVT---YNTLFHGLFEI 103 (260)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 103 (260)
..++.|+.+....+++ .|..++.. .-...+...+..|+.+-+. .+.+.|..++... -...+...+..
T Consensus 15 ~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 15 KATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHHHc
Confidence 3456777766655554 33232221 1123445556667764443 3444444333221 22344455556
Q ss_pred ccHHHHHHHHHHHhhcCCCcc---hhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc---CHHHHHHHHHHHHhcCCHH
Q 044047 104 HQVEHALKLFDEMQHSDVAAE---TSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL---GIEAYSCLIDGLCKIGKLE 177 (260)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 177 (260)
|+.+-+..++ +.|..++ .... ..+...+..|+.+-+..+++. +..+ +....+.+..+....+..+
T Consensus 87 ~~~~~v~~Ll----~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~----~~~~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 87 GHLSMVVQLM----KYGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAK----GQDVDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp TCHHHHHHHH----HTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred CCHHHHHHHH----HcCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhc----CCCccccCCCCCcHHHHHHHhCChHH
Confidence 6665443333 3333332 1122 233344556666654444432 2222 2222233333333333333
Q ss_pred HHHHHHHhhhhCCCCCchh---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCchhHHHHH
Q 044047 178 TAWELFQSLPRVGLMPNVV---TYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTF--NTLMLGCIRNNETSKVVEL 252 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~ 252 (260)
..+++. +.|..++.. .-...+...+..|+.+-+..+++ .|..++.... ...+....+.|+.+-+.-+
T Consensus 158 -~~~~L~---~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 229 (240)
T 3eu9_A 158 -PTRLLL---TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE----AGANVDAQNIKGESALDLAKQRKNVWMINHL 229 (240)
T ss_dssp -THHHHH---HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred -HHHHHH---hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 333332 222222211 11123344456677664444443 3444432211 1234444566777666555
Q ss_pred HHHH
Q 044047 253 LHRM 256 (260)
Q Consensus 253 ~~~m 256 (260)
++..
T Consensus 230 ~~~~ 233 (240)
T 3eu9_A 230 QEAR 233 (240)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 5443
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=78.76 E-value=16 Score=26.26 Aligned_cols=132 Identities=12% Similarity=0.061 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 6 RLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV---VTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
++++.+.+.|..++...-.+.+...+..|+.+-+..++ +.|..++. .-++ .+...+..|+.+-+..++
T Consensus 45 ~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll---- 115 (285)
T 3kea_A 45 RLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFV---- 115 (285)
T ss_dssp HHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----
T ss_pred HHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHH----
Confidence 44555666554443322223444455666665444443 33433322 1122 233344556554333333
Q ss_pred hcCCCCCccc---hHHHHHHHhccccHHHHHHHHHHHhhcCCCc-chhhHHHHHHHHHhcCcHHHHHHHHHH
Q 044047 83 SKGIRPTVVT---YNTLFHGLFEIHQVEHALKLFDEMQHSDVAA-ETSTYNTFIDGLCKNGYIVEAAELFRT 150 (260)
Q Consensus 83 ~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (260)
+.|..++... +.+.+...+..|..+-+..+ .+.|..+ +...-...+...+..|+.+-+.-+++.
T Consensus 116 ~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 116 KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 3344333222 13444455555665443333 3333222 111223344444566666655555544
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=78.56 E-value=12 Score=24.84 Aligned_cols=14 Identities=7% Similarity=0.275 Sum_probs=7.7
Q ss_pred hccCCHHHHHHHHH
Q 044047 31 CLTGEIDRARELFV 44 (260)
Q Consensus 31 ~~~~~~~~a~~~~~ 44 (260)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44566665555553
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=78.33 E-value=8.5 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 044047 59 NTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 59 ~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555566666666665553
No 285
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=77.64 E-value=4 Score=28.73 Aligned_cols=55 Identities=9% Similarity=-0.087 Sum_probs=27.1
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchh-------hHHHHHHHHH--hcCChHHHHHHHHHH
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVV-------TYNTLINGYC--KTKDVEESLNLYSEM 81 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 81 (260)
+...++.|+.+....+++.+...+...+.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334456677776666666655554443322 2233333322 446655555555443
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.59 E-value=12 Score=24.23 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=33.1
Q ss_pred HHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 044047 179 AWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNC 230 (260)
Q Consensus 179 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 230 (260)
+..+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 6667777666654322 345566666666777777777777777766666543
No 287
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.75 E-value=20 Score=26.44 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHH----HHHHHHhcCCCCCccchHHH
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLN----LYSEMLSKGIRPTVVTYNTL 96 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l 96 (260)
..|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +++-+.+.+++++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 456666666667777777776654321 22333454443333 34445555677776666666
Q ss_pred HHHHhccccHH-HHHHHHHHHh----hcC--CCcchhhHHHHHHHHHhcCcHHHHHHHH
Q 044047 97 FHGLFEIHQVE-HALKLFDEMQ----HSD--VAAETSTYNTFIDGLCKNGYIVEAAELF 148 (260)
Q Consensus 97 ~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 148 (260)
+..+.....-+ .-.++++.+. +.| ...++.....+...|.+.+++.+|...|
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 66655432111 1122233322 221 1235667778888888888888887765
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=76.67 E-value=17 Score=25.53 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=42.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc--CCCC----CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 62 INGYCKTKDVEESLNLYSEMLSK--GIRP----TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+.. .+........+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 44556666666666666655431 1111 111122223333333333334444444422 33444555666777
Q ss_pred HhcCcHHHHHHHHHHh
Q 044047 136 CKNGYIVEAAELFRTL 151 (260)
Q Consensus 136 ~~~~~~~~a~~~~~~~ 151 (260)
.+.|+.+.|..+|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 7777777777776443
No 289
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=74.64 E-value=7.4 Score=27.33 Aligned_cols=55 Identities=16% Similarity=0.057 Sum_probs=35.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCccc-------hHHHHHHHh--ccccHHHHHHHHHHH
Q 044047 62 INGYCKTKDVEESLNLYSEMLSKGIRPTVVT-------YNTLFHGLF--EIHQVEHALKLFDEM 116 (260)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 116 (260)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|..+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4455678899888888888877776665433 233433332 568877777777654
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=74.47 E-value=12 Score=24.25 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 044047 59 NTLINGYCKTKDVEESLNLYSEM 81 (260)
Q Consensus 59 ~~l~~~~~~~~~~~~a~~~~~~~ 81 (260)
..++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34555555556666666666555
No 291
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=73.41 E-value=18 Score=24.16 Aligned_cols=97 Identities=16% Similarity=0.084 Sum_probs=56.4
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHH
Q 044047 32 LTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALK 111 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 111 (260)
-.|.+.+++-++.. .+ ..+..-|. --+|-+.+++..|+..++.+....+..|+.+=..+=..+...
T Consensus 45 yngEY~R~Lf~L~~---lN-T~Ts~YYk--~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~-------- 110 (242)
T 3kae_A 45 LNGEYTRALFHLHK---LN-TCTSKYYE--SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDP-------- 110 (242)
T ss_dssp HTTCHHHHHHHHHT---CC-BHHHHHHH--HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCT--------
T ss_pred hcchHhHHHHHHHh---cc-hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeecc--------
Confidence 45667766655432 21 11222222 236778899999999999999766554433211111111111
Q ss_pred HHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhh
Q 044047 112 LFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLR 152 (260)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (260)
......++.+...+...|+.++|+..+..--
T Consensus 111 ----------~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 111 ----------GDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp ----------TCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------chHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 1223456667778889999999999887543
No 292
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=72.84 E-value=16 Score=23.49 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=26.4
Q ss_pred HHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC
Q 044047 10 LMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTK 69 (260)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 69 (260)
.+.+.|+++++.= ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3444555544432 2344444444445556666666655443344444444444444444
No 293
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=72.45 E-value=29 Score=26.23 Aligned_cols=62 Identities=10% Similarity=0.281 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCc--hhHHHHHHHHHhhc
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNE--TSKVVELLHRMDER 259 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~ 259 (260)
....++.-|...|+.++|...++++...... ...+...+..++-+.++ .+...+++..+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~ 282 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS 282 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 4578888899999999999999998643221 22333444445444333 34566777666543
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.33 E-value=18 Score=23.77 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=32.3
Q ss_pred HHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 044047 179 AWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCV 231 (260)
Q Consensus 179 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 231 (260)
+..+|..|...|+-.. ...|......+...|++.+|.++|..-++.+..|-..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 5556666666654322 3445556666666777777777777776666666443
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.80 E-value=29 Score=27.78 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC-CCch--hhH-HHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGC-MHNV--VTY-NTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
-+..+|.+++.|...+.++.|..+..+..-... .++. ..| --+...+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356788888889999999999998887742100 1111 112 12345566678888998888887765
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=70.43 E-value=18 Score=23.02 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=34.4
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCC
Q 044047 9 DLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKD 70 (260)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (260)
+.+.+.|+++++.=. .++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 445666766655432 3455555555566677777777666544455555555555555543
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.21 E-value=24 Score=24.48 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhhCCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 044047 177 ETAWELFQSLPRVGLMPN-VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN 229 (260)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 229 (260)
+.+..+|..|...|+-.. ...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 355566666666554322 34455566666666777777777766666655553
No 298
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=70.19 E-value=17 Score=23.27 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCCh
Q 044047 8 LDLMIQRGVRPNAFVYSTLIDGFCLTG-EIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDV 71 (260)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 71 (260)
.+.+.+.|+++++.=. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 5 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 5 NQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3456677877766533 3555665555 6667888888887776555666665556666665543
No 299
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=70.07 E-value=17 Score=22.84 Aligned_cols=60 Identities=7% Similarity=0.032 Sum_probs=34.8
Q ss_pred HHHHcCCCccHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCC
Q 044047 10 LMIQRGVRPNAFVYSTLIDGFCLTG-EIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKD 70 (260)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (260)
.+.+.|.++++.=. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 45666776665433 3555555555 566677788777766544555555555555555543
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=69.81 E-value=24 Score=24.17 Aligned_cols=150 Identities=11% Similarity=0.048 Sum_probs=72.7
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhh--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccch--HHHHHHHhc
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVT--YNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTY--NTLFHGLFE 102 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~ 102 (260)
+...++.|+.+.+..+++.+.+.+..++... -.+.+...+..|+.+ +++.+.+.|..++.... ...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4555677898888888877666554443221 123344455667654 44445556655543321 234445556
Q ss_pred cccHHHHHHHHHHHhhcCCCc---chhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH---HHHHHHHHHHHhcCCH
Q 044047 103 IHQVEHALKLFDEMQHSDVAA---ETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGI---EAYSCLIDGLCKIGKL 176 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 176 (260)
.|+.+-+..+++.....+..+ +....+ .+...+..|+.+-+..+++ .+..++. ..-...+...+..|+.
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETVQLLLE----RGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHHHHHHH----cCCCcccccccCCCcHHHHHHHcCCH
Confidence 777766666665543211111 111222 2333345566655544444 3322221 1111223344566777
Q ss_pred HHHHHHHHh
Q 044047 177 ETAWELFQS 185 (260)
Q Consensus 177 ~~a~~~~~~ 185 (260)
+-+..+++.
T Consensus 164 ~~v~~Ll~~ 172 (241)
T 1k1a_A 164 SMVQLLLQH 172 (241)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 655555443
No 301
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=69.06 E-value=12 Score=23.86 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=33.9
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCC
Q 044047 9 DLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKD 70 (260)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (260)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 44556677666542 23444444444 55677777777766544555555555555555543
No 302
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.98 E-value=34 Score=25.59 Aligned_cols=133 Identities=12% Similarity=0.047 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHH----HHHHHHHHHhcCCCCCccchHHH
Q 044047 21 FVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEE----SLNLYSEMLSKGIRPTVVTYNTL 96 (260)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l 96 (260)
.+|.++..-|.+.+++++|.+++..-. ..+.+.|+... +.-+++-+.+.++++|......+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 466777777788888888887764421 12233344333 33333445556666776666666
Q ss_pred HHHHhccccHH-HHHHHHHHHh----hcC--CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHH
Q 044047 97 FHGLFEIHQVE-HALKLFDEMQ----HSD--VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDG 169 (260)
Q Consensus 97 ~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (260)
+..+.....-+ .-..+.+.+. +.| ..-++.....+...|.+.+++.+|...|- . +..+++..+..++.-
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHH
Confidence 66665544311 1122222221 112 23456677788888888888888887762 1 223334555544444
Q ss_pred HHh
Q 044047 170 LCK 172 (260)
Q Consensus 170 ~~~ 172 (260)
+..
T Consensus 177 w~~ 179 (336)
T 3lpz_A 177 WYK 179 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.82 E-value=27 Score=24.49 Aligned_cols=91 Identities=18% Similarity=0.034 Sum_probs=50.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhc--CCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHH
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVL--KCEL----GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIH 203 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (260)
--++.+....++++|..++++.... +.+. ........+..-.....-.-+..+.+.+.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3466777788888888888766532 1111 111122223333333333344444444433 234555666667
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 044047 204 GFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 204 ~~~~~g~~~~a~~~~~~~~~ 223 (260)
.+.+.|+.++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 77778888888888776654
No 304
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=68.61 E-value=32 Score=25.28 Aligned_cols=226 Identities=11% Similarity=0.073 Sum_probs=107.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCCCCccchHHHHHHH
Q 044047 23 YSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDV--EESLNLYSEMLSKGIRPTVVTYNTLFHGL 100 (260)
Q Consensus 23 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (260)
...++.-|...|+.++|...++++.... ........++......++. +.+-.++..+.. ++-+.......+...+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll 82 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLL 82 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 4568888999999999999988864321 2233334445544444432 345556666653 3333333322222222
Q ss_pred hcccc----HHHHHH----HHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHH---Hhhh-----------cC---
Q 044047 101 FEIHQ----VEHALK----LFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFR---TLRV-----------LK--- 155 (260)
Q Consensus 101 ~~~~~----~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~-----------~~--- 155 (260)
....+ ...|.. ++.++...++-|........- .. ....+.+.++ .+.. .|
T Consensus 83 ~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~----~~-~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~ 157 (307)
T 2zu6_B 83 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKG----TV-DCVQARAALDKATVLLSMSKGGKRKDSVWGSGG 157 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTT----TC-CCHHHHHHHHHHHHHHHTCC----CCCSSCCCS
T ss_pred HhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHh----cc-cchHHHHHHHHHHHHhcccccHhHHhhhcCCCC
Confidence 22222 112222 223333333332222111110 01 1111111111 1111 11
Q ss_pred CCcCH----HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCC
Q 044047 156 CELGI----EAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQ--MDKAHDLFLDMEAKGVAPN 229 (260)
Q Consensus 156 ~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~ 229 (260)
...+. .....++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+....++..+.+.|+-+.
T Consensus 158 ~~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 158 GQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 01122 23467888899999999999999988632111 12334444455554433 4567777877776665544
Q ss_pred hhhHHHHHHHHHhcC----chhHHHHHHHHHh
Q 044047 230 CVTFNTLMLGCIRNN----ETSKVVELLHRMD 257 (260)
Q Consensus 230 ~~~~~~l~~~~~~~~----~~~~a~~~~~~m~ 257 (260)
......+...+.... |...|..++.++.
T Consensus 237 ~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v 268 (307)
T 2zu6_B 237 DQMKRGYERIYNEIPDINLDVPHSYSVLERFV 268 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhhcccccHHHHHHHHH
Confidence 444333333332222 3445555555443
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=68.56 E-value=21 Score=23.06 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHhhhhCCC
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK--LETAWELFQSLPRVGL 191 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 191 (260)
....++.-|...|+.++|.+.++++.... .....+...+..++-+.++ .+.+..++..+...++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 45567788888888888888888875321 1112223333334443222 3456666666665543
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=67.63 E-value=43 Score=26.37 Aligned_cols=111 Identities=12% Similarity=0.020 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHH
Q 044047 34 GEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLF 113 (260)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 113 (260)
.+.+.|.++- .+.|++--...|..-...+...|++++|.++-..... |+--+..|.+.+-..=...|+..-.+.+|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 5666665554 3456666666777778888889999999888766544 34446777766665555666777777778
Q ss_pred HHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHH
Q 044047 114 DEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFR 149 (260)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (260)
..+.+.| ..+..--.-+++.-...|+.+-..+++.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 7777776 4444333344555555565555555544
No 307
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=66.83 E-value=13 Score=19.99 Aligned_cols=45 Identities=11% Similarity=0.002 Sum_probs=27.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHh
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCK 67 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 67 (260)
.++.++..+++..-.++++-.++++...| ..+..+|-.-.+.+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 35556666666666667777777666666 4555555555554443
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=65.95 E-value=19 Score=23.44 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=28.7
Q ss_pred hhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCccchHHHHHHHhcccc
Q 044047 47 DINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK--GIRPTVVTYNTLFHGLFEIHQ 105 (260)
Q Consensus 47 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 105 (260)
.+.|+..+.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3345444332 233444445555555666666666555 444444444444455555543
No 309
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=65.61 E-value=29 Score=23.60 Aligned_cols=197 Identities=9% Similarity=0.062 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCCccHH--HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCch---hhHHHHHHHHHhcCChHHHHHHHH
Q 044047 5 SRLLDLMIQRGVRPNAF--VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNV---VTYNTLINGYCKTKDVEESLNLYS 79 (260)
Q Consensus 5 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~ 79 (260)
.++++.+.+.|..++.. .-.+.+...+..|+.+-+..+++ .|..++. ..-...+...+..|+.+ +++
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t~L~~A~~~~~~~----~v~ 93 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS----KGAIVDQLGGDLNSTPLHWATRQGHLS----MVV 93 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCBTTTTBCHHHHHHHHTCHH----HHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH----cCCcchhhcCCcCCChhHHHHHcCCHH----HHH
Confidence 35667777776544322 12234556667787765555544 3322221 11123344445566654 334
Q ss_pred HHHhcCCCCCccc--hHHHHHHHhccccHHHHHHHHHHHhhcCCCcc---hhhHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 044047 80 EMLSKGIRPTVVT--YNTLFHGLFEIHQVEHALKLFDEMQHSDVAAE---TSTYNTFIDGLCKNGYIVEAAELFRTLRVL 154 (260)
Q Consensus 80 ~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (260)
.+.+.|..++... -...+...+..|+.+-+..++ +.|..++ ....+.+..+... +......+++.. .
T Consensus 94 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll----~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~L~~---~ 165 (240)
T 3eu9_A 94 QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI----AKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRLLLT---F 165 (240)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHHHHH---T
T ss_pred HHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHH----hcCCCccccCCCCCcHHHHHHHh-CChHHHHHHHHh---c
Confidence 4445565554321 123344455566665443333 3443332 2222334333333 332333333322 2
Q ss_pred CCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhh--HHHHHHHHHhcCChHHHHHHHHHH
Q 044047 155 KCELGIE---AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVT--YNIMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 155 ~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
+..++.. .-.+.+...+..|+.+-+..+++. |..++... -...+....+.|+.+-+..+++..
T Consensus 166 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA----GANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 2222211 111233444566777655555443 43333211 012344445667776555555443
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.03 E-value=22 Score=22.11 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHhhhhCCC
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK--LETAWELFQSLPRVGL 191 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 191 (260)
....++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+....++..+...|+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 345677778888888888888887753211 111222333334433322 3456666666665543
No 311
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=63.82 E-value=20 Score=21.09 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhccC
Q 044047 4 ASRLLDLMIQRGVRPNAFVYSTLIDGFCLTG 34 (260)
Q Consensus 4 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (260)
|.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455555555566555555555555555444
No 312
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.76 E-value=55 Score=26.21 Aligned_cols=66 Identities=15% Similarity=0.050 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCC-CcCHH--H-HHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 124 ETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKC-ELGIE--A-YSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
....++.+++.|...+.++.|..+..+..-... .++.. . +..+...+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356788999999999999999999988752111 11111 2 233466777889999999999887664
No 313
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=63.55 E-value=29 Score=22.90 Aligned_cols=173 Identities=10% Similarity=-0.002 Sum_probs=77.2
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC---ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcch---hhHHHHHHHHHh
Q 044047 64 GYCKTKDVEESLNLYSEMLSKGIRPT---VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAET---STYNTFIDGLCK 137 (260)
Q Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 137 (260)
..+..|+.+....++..- +..++ ..-+ +.+...+..|+.+-+..++ +.|..++. ...+ .+...+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t-~l~~A~~ 81 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDT---TYQVDEVDTEGN-TPLNIAVHNNDIEIAKALI----DRGADINLQNSISDS-PYLYAGA 81 (201)
T ss_dssp HHHHTTCHHHHHHHHTCT---TCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCC-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHcC---CCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCCC-HHHHHHH
Confidence 345667777666665432 11222 2222 3444455667765444444 33433321 1222 2334456
Q ss_pred cCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhh-hhCCCCCchhhHHHHHHHHHhcCC-hHHHH
Q 044047 138 NGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSL-PRVGLMPNVVTYNIMIHGFCNDGQ-MDKAH 215 (260)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~ 215 (260)
.|+.+-+..+++.....-...+....+ .+...+..|+.+-+..+++.- ..... .+..-.+.+..+. ..++ ...-.
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~-~~~~~~~~~~ 158 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLEDGREDIDF-QNDFGYTALIEAV-GLREGNQLYQ 158 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHHHCCCCTTC-CCTTSCCHHHHHH-HSSCCSHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcCC-CCCCCCCHHHHHH-HhccchhhHH
Confidence 677776666664322110011111112 223345667777666666543 11111 2222333444333 3333 33345
Q ss_pred HHHHHHHhCCCCCChhhHH--HHHHHHHhcCchhH
Q 044047 216 DLFLDMEAKGVAPNCVTFN--TLMLGCIRNNETSK 248 (260)
Q Consensus 216 ~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~ 248 (260)
++.+.+.+.|..++..... ..+......|+.+-
T Consensus 159 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 193 (201)
T 3hra_A 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193 (201)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhH
Confidence 6667777777666543211 23334445566543
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=63.27 E-value=52 Score=25.72 Aligned_cols=54 Identities=7% Similarity=-0.031 Sum_probs=28.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCc-----HHHHHHHHHHhhhcC
Q 044047 102 EIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGY-----IVEAAELFRTLRVLK 155 (260)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 155 (260)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|. ...|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 345677777777777777655544333333333333332 223444455555555
No 315
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=62.78 E-value=41 Score=24.95 Aligned_cols=89 Identities=16% Similarity=0.121 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhh--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHH
Q 044047 19 NAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVT--YNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTL 96 (260)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 96 (260)
|..-++. +...+..|+.+.+..+++ .|..++... -.+.+...+..|+.+-+. .+.+.|..++...-...
T Consensus 17 d~~g~t~-L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~ 87 (364)
T 3ljn_A 17 DDENMEK-IHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAK----YLASVGEVHSLWHGQKP 87 (364)
T ss_dssp CHHHHHH-HHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBCH
T ss_pred CCCCCCH-HHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHH----HHHHCCCCccccCCCCH
Confidence 3333333 344445666665555443 232222211 112233334455543332 33333433333222233
Q ss_pred HHHHhccccHHHHHHHHHHH
Q 044047 97 FHGLFEIHQVEHALKLFDEM 116 (260)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~ 116 (260)
+...+..|+.+-+..+++..
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGA 107 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhc
Confidence 44444556665555555543
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=62.73 E-value=27 Score=22.23 Aligned_cols=58 Identities=9% Similarity=-0.021 Sum_probs=27.6
Q ss_pred hhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCc
Q 044047 186 LPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNE 245 (260)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 245 (260)
+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34445444322 122333333334 44566666666655444455555555555555543
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=61.72 E-value=37 Score=23.48 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhcCCCcCHHH---H-----HHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 141 IVEAAELFRTLRVLKCELGIEA---Y-----SCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~---~-----~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
++.|+.+|+.+.... +.+... . -..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~-~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEF-TLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 567777777776544 222111 1 12345567777777777777776654
No 318
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.05 E-value=19 Score=19.99 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=29.7
Q ss_pred HHHHcCCCccHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC
Q 044047 10 LMIQRGVRPNAFVYSTLIDGFCLTG-EIDRARELFVSMDINGCMHNVVTYNTLINGYCKTK 69 (260)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 69 (260)
.+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 35556666555433 3445554443 44455666666655543344445444444444444
No 319
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=59.98 E-value=31 Score=22.07 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=28.2
Q ss_pred hhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCc
Q 044047 186 LPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNE 245 (260)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 245 (260)
+.+.|++++. --..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3444544332 2223344444444555666666666555444455555555555555554
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=59.30 E-value=31 Score=21.88 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=27.7
Q ss_pred hhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCc
Q 044047 186 LPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNE 245 (260)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 245 (260)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34444443322 223333333444455566666666555444445554455555555543
No 321
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=58.16 E-value=23 Score=22.37 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=19.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 044047 202 IHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNN 244 (260)
Q Consensus 202 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 244 (260)
+..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333333444445555555554443444444444444444444
No 322
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=58.02 E-value=26 Score=21.77 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=15.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 044047 208 DGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNN 244 (260)
Q Consensus 208 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 244 (260)
.+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444444444444433333334333344444433
No 323
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=57.37 E-value=33 Score=21.48 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 044047 210 QMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNN 244 (260)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 244 (260)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554443344444444444444443
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=57.23 E-value=35 Score=21.82 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCc
Q 044047 210 QMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNE 245 (260)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 245 (260)
..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 444555666555555444444444444455554443
No 325
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=57.16 E-value=43 Score=22.82 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=30.0
Q ss_pred cCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc-----HHHHHHHHHHHhhcCCC
Q 044047 68 TKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ-----VEHALKLFDEMQHSDVA 122 (260)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 122 (260)
-.|.+.|+-++.+|.+.| .|.-..-..++.+.-..|. ...|...++.....|.|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 457777777777777777 5544444444444444442 23444555555555543
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=56.99 E-value=17 Score=19.11 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 044047 107 EHALKLFDEMQHSDVAAETSTYNTFIDGL 135 (260)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (260)
++|...|.+|.+..-.++..+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555554433334445666666555
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.95 E-value=1e+02 Score=27.01 Aligned_cols=108 Identities=10% Similarity=-0.058 Sum_probs=65.6
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC-----------------
Q 044047 131 FIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMP----------------- 193 (260)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 193 (260)
++..+...|.++-+.++..- ++.++..-..+..+|...|++++|...|+++.. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 55556666766655543322 233444445678889999999999999987642 1110
Q ss_pred ------chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcC
Q 044047 194 ------NVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNC----VTFNTLMLGCIRNN 244 (260)
Q Consensus 194 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~ 244 (260)
...-|..++..+.+.+-++.+.++.+..++.--..|. ..|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1124667777778888888888888877764212122 24555555555443
No 328
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=56.80 E-value=43 Score=22.74 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=26.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc-----HHHHHHHHHHHhhcC
Q 044047 68 TKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ-----VEHALKLFDEMQHSD 120 (260)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 120 (260)
-.|.+.|+-.+.+|++.|-.|.-..-..++.+.-..|. ...|...++.....|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 35667777777777776655544333344444333332 223444444444444
No 329
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=56.08 E-value=45 Score=22.70 Aligned_cols=207 Identities=11% Similarity=0.041 Sum_probs=94.2
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhh--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc--hHHHHHHHhc
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVT--YNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVT--YNTLFHGLFE 102 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 102 (260)
+...+..|+.+.+..++ +.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -...+...+.
T Consensus 15 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 15 LHAAAEAGHVDICHMLV----QAGANIDTCSEDQRTPLMEAAENNHLEA----VKYLIKAGALVDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp HHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHTTCHHH----HHHHHTTTCCCCCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHH----HcCCCcCccCCCCCCHHHHHHHhCCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHH
Confidence 44455667776544444 4443332211 1123444455676543 344445555443322 1234444556
Q ss_pred cccHHHHHHHHHHHhhcC-CCc---chhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH---HHHHHHHHHHHhcCC
Q 044047 103 IHQVEHALKLFDEMQHSD-VAA---ETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGI---EAYSCLIDGLCKIGK 175 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 175 (260)
.|+.+-+..+++ .+ ..+ +....+ .+...+..|+.+-+..+++ .+..++. ...+ .+...+..|+
T Consensus 87 ~~~~~~~~~Ll~----~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t-~L~~A~~~~~ 156 (237)
T 3b7b_A 87 KGHYEVVQYLLS----NGQMDVNCQDDGGWT-PMIWATEYKHVDLVKLLLS----KGSDINIRDNEENI-CLHWAAFSGC 156 (237)
T ss_dssp TTCHHHHHHHHT----TTCCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCC-HHHHHHHHCC
T ss_pred cCCHHHHHHHHh----CCCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCC-HHHHHHHCCC
Confidence 666654444433 32 111 111222 2333445666655544443 3322221 1111 2233345566
Q ss_pred HHHHHHHHHhhhhCCCCCchhh--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCchhHHHH
Q 044047 176 LETAWELFQSLPRVGLMPNVVT--YNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVT--FNTLMLGCIRNNETSKVVE 251 (260)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~ 251 (260)
.+-+.. +.+.|..++... -...+...+..|+.+-+ +.+.+.|..++... -...+......|+...+.+
T Consensus 157 ~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~ 228 (237)
T 3b7b_A 157 VDIAEI----LLAAKCDLHAVNIHGDSPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228 (237)
T ss_dssp HHHHHH----HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred HHHHHH----HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Confidence 654444 344444333211 11233344566766544 34445555444221 1123445567788888888
Q ss_pred HHHHHhhc
Q 044047 252 LLHRMDER 259 (260)
Q Consensus 252 ~~~~m~~~ 259 (260)
+.+.+++.
T Consensus 229 l~~~l~ds 236 (237)
T 3b7b_A 229 MSKALQDS 236 (237)
T ss_dssp HHHHHHHC
T ss_pred HHHHhhcc
Confidence 88888764
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=55.41 E-value=28 Score=22.68 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=34.7
Q ss_pred HHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhc--CCCcchhhHHHHHHHHHhcCcH
Q 044047 81 MLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS--DVAAETSTYNTFIDGLCKNGYI 141 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 141 (260)
+.+.|.+++.. =..++..+...+.+-.|.++++.+.+. +...+..|..--+..+...|-.
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 44456665432 334455555555666677777777665 4445555665666666666643
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.04 E-value=43 Score=21.89 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHhhhhCCCCC--chhhHHHHHH-H-----HHhcCChHHHHHHHHHHH
Q 044047 174 GKLETAWELFQSLPRVGLMP--NVVTYNIMIH-G-----FCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~ 222 (260)
|++-+|.++++..=.....+ ....|..||. . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666554332223 3334444444 1 123555555555555444
No 332
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=53.88 E-value=36 Score=20.89 Aligned_cols=43 Identities=7% Similarity=-0.086 Sum_probs=28.3
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044047 42 LFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSK 84 (260)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 84 (260)
+|+.+....+.|+...--.-+..+...++++.|.++...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555555555555444444455566788999999999888764
No 333
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=53.75 E-value=38 Score=21.16 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=4.3
Q ss_pred cCChHHHHHHH
Q 044047 68 TKDVEESLNLY 78 (260)
Q Consensus 68 ~~~~~~a~~~~ 78 (260)
.|+.+.+..++
T Consensus 12 ~g~~~~v~~ll 22 (156)
T 1bd8_A 12 RGDVQEVRRLL 22 (156)
T ss_dssp HTCHHHHHHHH
T ss_pred hCCHHHHHHHH
Confidence 34444333333
No 334
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=53.21 E-value=39 Score=21.11 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=37.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc--hHHHHHHHhc
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGC-MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVT--YNTLFHGLFE 102 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 102 (260)
.+...+..|+.+.+..+++. ....+ ..+..-.+. +.. +..|+.+-+. .+.+.|..++... -.+.+...+.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~-L~~-~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTA-LQV-MMFGSTAIAL----ELLKQGASPNVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCH-HHH-SCTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcH-HHH-HHcCCHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 34556678888888888876 21111 122222223 333 5667765443 3444555544321 1223334444
Q ss_pred cccHHHHH
Q 044047 103 IHQVEHAL 110 (260)
Q Consensus 103 ~~~~~~a~ 110 (260)
.|+.+-+.
T Consensus 78 ~~~~~~v~ 85 (156)
T 1bd8_A 78 TGFLDTLK 85 (156)
T ss_dssp TTCHHHHH
T ss_pred cCcHHHHH
Confidence 56654433
No 335
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=52.83 E-value=22 Score=20.79 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHH
Q 044047 6 RLLDLMIQRGVRPNAFVYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESL 75 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 75 (260)
.+++.+.+.|+- +......+-. .......+.|.++++.+...| +.+|..++.++...|+..-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 467888888854 4444443322 111257899999999998776 467888899887777765554
No 336
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=52.52 E-value=33 Score=20.16 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=32.5
Q ss_pred HHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH-----HhCCCCCChhhHHHH
Q 044047 178 TAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDM-----EAKGVAPNCVTFNTL 236 (260)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~p~~~~~~~l 236 (260)
.+.++.+++...|+.|+..+...++..|...+- + +.++..+. ...|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 455666666677777777777777776666553 1 33332222 133566666655544
No 337
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=52.52 E-value=53 Score=26.59 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHH
Q 044047 195 VVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVV 250 (260)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 250 (260)
..-...++..|.+.|-.+.|.++++.+-.+-+. +...+ ..+..|.++|+++.+.
T Consensus 516 ndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 516 NDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 445678889999999999999999998776333 44455 5667888999887653
No 338
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=52.50 E-value=68 Score=23.74 Aligned_cols=25 Identities=8% Similarity=0.015 Sum_probs=12.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC
Q 044047 63 NGYCKTKDVEESLNLYSEMLSKGIR 87 (260)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~~~ 87 (260)
...+..|+.+-+..+++.....|..
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHhccccCCC
Confidence 3334455655555555544444443
No 339
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=52.14 E-value=71 Score=23.82 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=34.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcC--ChHHHHHHHHHHHhcCC
Q 044047 22 VYSTLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTK--DVEESLNLYSEMLSKGI 86 (260)
Q Consensus 22 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 86 (260)
....++.-|...|+.++|.+.++++.... ........++......+ ..+.+..++..+.+.|+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~--~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPS--LLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGG--GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcc--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 34667888888899999988888775221 11112222222222222 23445566666665543
No 340
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=50.79 E-value=58 Score=22.40 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=39.8
Q ss_pred hHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhcccc-----HHHHHHHHHHHhhcCCC
Q 044047 57 TYNTLINGYCK---TKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQ-----VEHALKLFDEMQHSDVA 122 (260)
Q Consensus 57 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 122 (260)
.+-.+|+++.+ -.|.+.|+-++.+|.+.|-.|.-..-..++.+.-..|. ...|...++.....|.|
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34445555544 46888888888888888877655444555555544443 33455556666666644
No 341
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=50.35 E-value=51 Score=24.60 Aligned_cols=77 Identities=9% Similarity=0.098 Sum_probs=50.5
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc-cchH--HHHHHH----hccccHHHHHHHH
Q 044047 41 ELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTV-VTYN--TLFHGL----FEIHQVEHALKLF 113 (260)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~--~l~~~~----~~~~~~~~a~~~~ 113 (260)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++++.+...|..... ..+. +++..+ ....+.++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 35566667788888888888888888777888999999999887654322 1221 222221 2346777777777
Q ss_pred HHHh
Q 044047 114 DEMQ 117 (260)
Q Consensus 114 ~~~~ 117 (260)
+.+.
T Consensus 310 ~~~p 313 (345)
T 2qfz_A 310 QNLP 313 (345)
T ss_dssp TSCS
T ss_pred HcCC
Confidence 6653
No 342
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=49.81 E-value=19 Score=22.24 Aligned_cols=47 Identities=9% Similarity=-0.019 Sum_probs=24.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHH
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESL 75 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 75 (260)
.|...+..++.+-|.++++...+.| +...|.+.+-.|...=+++-++
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 3444455555555555555555544 4455555555555544444443
No 343
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=48.53 E-value=88 Score=23.87 Aligned_cols=203 Identities=16% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCccHHHHH--HHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 5 SRLLDLMIQRGVRPNAFVYS--TLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
.++++.+.+.|..|+..... +.+...+..|+.+-+..+++. ...+......-.+.+...+..|+.+-+.-+++.
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-- 102 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN-- 102 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhC--
Q ss_pred hcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHH
Q 044047 83 SKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEA 162 (260)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (260)
...+......-...+...+..|..+.+..+++. ..........-...+...+..|+.+-+..+++.-.... ..+...
T Consensus 103 ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g 179 (437)
T 1n11_A 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNG 179 (437)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSC
T ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCC
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhH--HHHHHHHHhcCChHHHHHHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTY--NIMIHGFCNDGQMDKAHDLFL 219 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~ 219 (260)
.+.+..+..... .++++.+.+.|..++...+ ...+...+..|+.+-+..+++
T Consensus 180 ~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 233 (437)
T 1n11_A 180 LTPLHVAVHHNN-----LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233 (437)
T ss_dssp CCHHHHHHHTTC-----HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHcCC-----HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
No 344
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=47.89 E-value=74 Score=22.77 Aligned_cols=62 Identities=10% Similarity=0.033 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc-cccHHHHHHHHHHHh
Q 044047 56 VTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE-IHQVEHALKLFDEMQ 117 (260)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 117 (260)
.....++...-+.+++++....++++.+.+...+..--|.|-.+|-. .|....+++++..+.
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissie 94 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHH
Confidence 34445556666777777777777777777666666666666655533 244445555555443
No 345
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.79 E-value=63 Score=21.95 Aligned_cols=178 Identities=10% Similarity=0.004 Sum_probs=84.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCccc--hHHHHHHHhccccHHHHHHHHHHHhhcCCCcchh--hHHHHHHHHHh
Q 044047 62 INGYCKTKDVEESLNLYSEMLSKGIRPTVVT--YNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETS--TYNTFIDGLCK 137 (260)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 137 (260)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..++ +.|..++.. .-...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV----TAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCHHHHHHH
Confidence 4455677898888888887777665554332 223455555667765444443 444333221 11123444456
Q ss_pred cCcHHHHHHHHHHhhhcCCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchh---hHHHHHHHHHhcCCh
Q 044047 138 NGYIVEAAELFRTLRVLKCE---LGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVV---TYNIMIHGFCNDGQM 211 (260)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 211 (260)
.|+.+-+..+++.....+.. .+....+. +...+..|+.+-...+++ .|..++.. .-...+...+..|+.
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQLLLE----RGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHHHHHH----cCCCcccccccCCCcHHHHHHHcCCH
Confidence 77777776666654321111 11111222 223345566655555444 34333211 112233444566776
Q ss_pred HHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCchhHHHHH
Q 044047 212 DKAHDLFLDMEAKGVAPNCVTF--NTLMLGCIRNNETSKVVEL 252 (260)
Q Consensus 212 ~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~ 252 (260)
+-+.. +.+.|..++.... ...+...+..|+.+-+.-+
T Consensus 164 ~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 202 (241)
T 1k1a_A 164 SMVQL----LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202 (241)
T ss_dssp HHHHH----HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred HHHHH----HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 54443 4444554432211 1223334455665544433
No 346
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=46.91 E-value=44 Score=20.69 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=24.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL 176 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (260)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34444444455555666666665554444555544445555554443
No 347
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=44.97 E-value=53 Score=21.49 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 044047 59 NTLINGYCKTKDVEESLNLYSEML 82 (260)
Q Consensus 59 ~~l~~~~~~~~~~~~a~~~~~~~~ 82 (260)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555666666666666654
No 348
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=44.93 E-value=40 Score=21.22 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=27.3
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH
Q 044047 130 TFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL 176 (260)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (260)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555555555666777777766655555655555555555555543
No 349
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=44.23 E-value=45 Score=23.46 Aligned_cols=55 Identities=7% Similarity=-0.054 Sum_probs=31.1
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCC-------chhhHHHHHHHHH--hcCChHHHHHHHHHH
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMH-------NVVTYNTLINGYC--KTKDVEESLNLYSEM 81 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 81 (260)
+...++.|+.+.+..+++.....+... +..-++.|..++. +.|+.+-+..+++.-
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 444556788888887887665554222 2233444544443 246766666666553
No 350
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=43.10 E-value=39 Score=22.39 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=33.1
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccH
Q 044047 52 MHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQV 106 (260)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (260)
.|....++.++.+++...-.+.++..+.+....|.. +..+|.--.+.+++..-+
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I-~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTI-PLDTFVKQGRELARQQFL 161 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 345555577777777666677777777777766643 555665555555554333
No 351
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.08 E-value=72 Score=21.28 Aligned_cols=172 Identities=8% Similarity=-0.057 Sum_probs=88.4
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 044047 53 HNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFI 132 (260)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (260)
++...-...+..+...++. .+...+.++... ++..+-...+.++...+..+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 3444444555555555553 333333333332 34444445555555555533 3333333332 24555556666
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChH
Q 044047 133 DGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMD 212 (260)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (260)
.++...++.+.. ..+..+.. .++...-...+.++...|+.+. ...+..+.+ .++...-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 677776665433 33333332 4566666666777777776543 334444443 2455666666777777766 4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 044047 213 KAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNN 244 (260)
Q Consensus 213 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 244 (260)
.+...+..+.+. ++..+-...+.++...+
T Consensus 174 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 174 RVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 456666666553 35555555555555443
No 352
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=42.13 E-value=79 Score=22.16 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=48.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC-------CccchHHHHHHHh--ccccHHHHHHHHHHHhhc---------CCC
Q 044047 61 LINGYCKTKDVEESLNLYSEMLSKGIRP-------TVVTYNTLFHGLF--EIHQVEHALKLFDEMQHS---------DVA 122 (260)
Q Consensus 61 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~---------~~~ 122 (260)
.+...+..|+.+.+..+++...+.+... +..-.+.|..+.. +.|+.+-+..+++.-... +..
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~ 95 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYT 95 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccc
Confidence 3444567788888888888777665433 2333444555543 357777777777654221 111
Q ss_pred -cchhhHHHHHHHHHhcCcHHHHHHHHHH
Q 044047 123 -AETSTYNTFIDGLCKNGYIVEAAELFRT 150 (260)
Q Consensus 123 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (260)
.+....+.| ...+..|+.+-+..+++.
T Consensus 96 ~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 96 DSYYKGQTAL-HIAIERRNMTLVTLLVEN 123 (273)
T ss_dssp STTTTTCCHH-HHHHHTTCHHHHHHHHHT
T ss_pred cccCCCCCHH-HHHHHcCCHHHHHHHHHC
Confidence 111222333 334566777666555543
No 353
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=41.88 E-value=1.5e+02 Score=24.50 Aligned_cols=176 Identities=12% Similarity=-0.031 Sum_probs=99.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCccch----HHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHH
Q 044047 70 DVEESLNLYSEMLSKGIRPTVVTY----NTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAA 145 (260)
Q Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (260)
+.+.|...+....+.... +.... ..+.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 678888888777654322 22222 222223334443445566666544332 33333344444555779999999
Q ss_pred HHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC------------CCCC-------c---hh-----hH
Q 044047 146 ELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV------------GLMP-------N---VV-----TY 198 (260)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~-------~---~~-----~~ 198 (260)
..|+.+.... .........+.+++...|+.++|..+|..+... |.++ + .. .-
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 384 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPE 384 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHH
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChH
Confidence 9998887543 234555667788888889999998888776432 2110 0 00 01
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 044047 199 NIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVEL 252 (260)
Q Consensus 199 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 252 (260)
..-+..+...|....|...+..+... . +......+.......|.++.++..
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~ 435 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQA 435 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHH
Confidence 12234566778888888877777654 2 223333444444555666555443
No 354
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.87 E-value=71 Score=20.88 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=30.6
Q ss_pred ccCCHHHHHHHHHHHhhcCCCC--chhhHHHHHH-H-----HHhcCChHHHHHHHHHHHh
Q 044047 32 LTGEIDRARELFVSMDINGCMH--NVVTYNTLIN-G-----YCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 83 (260)
..|++-+|.++++..=.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777764443233 4455555555 2 2335777777777776654
No 355
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=41.85 E-value=1.2e+02 Score=23.63 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=29.1
Q ss_pred hcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCC-----HHHHHHHHHhhhhCCC
Q 044047 137 KNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGK-----LETAWELFQSLPRVGL 191 (260)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 191 (260)
+.++.+.|+.++..|...|..|....-..+..+.-..|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 456777777777777777655444333334444444443 2234444444455543
No 356
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=41.08 E-value=29 Score=21.39 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 044047 163 YSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDL 217 (260)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 217 (260)
|.-.|.....+++.+-|.++++-..+.| +...|.+.+-.|-..=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4444555556666666666666666654 555566666666555555555543
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.00 E-value=1.9e+02 Score=25.42 Aligned_cols=107 Identities=16% Similarity=0.050 Sum_probs=62.1
Q ss_pred HHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC------------------
Q 044047 96 LFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE------------------ 157 (260)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 157 (260)
++..+...+..+-+.++..- .+.++..-..+..+|...|++++|...|++.-. ++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 33444445555544332221 233444445678889999999999999987531 110
Q ss_pred -----cCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCch----hhHHHHHHHHHhc
Q 044047 158 -----LGIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNV----VTYNIMIHGFCND 208 (260)
Q Consensus 158 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 208 (260)
....-|..++..+-+.+-++-+.++-+.+.+.--.-|. ..|+.+.++.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 01124566777777888888888877777654211122 3455555555543
No 358
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.82 E-value=1.4e+02 Score=23.77 Aligned_cols=74 Identities=15% Similarity=0.027 Sum_probs=51.9
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhc
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFE 102 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (260)
.+...-...++.|...|..+.... |.+...||.+.-.....|+.-.|.-.|-+.... ..|-..+..++...+.+
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHHH
Confidence 333444566788999998887775 667788999988888888887777776666554 34566666666665543
No 359
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=39.10 E-value=1.1e+02 Score=24.03 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCc--------hhhHH-HHHHHHHhcCChHHHHHHHHHH
Q 044047 162 AYSCLIDGLCKIGKLETAWELFQSLPRVGLMPN--------VVTYN-IMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~-~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
..+.+.+.|.+.++...+..+++.+...+..|+ ..+|. .+.+.+...+++.+|.+.+..+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 345666777777777777777777766544222 12332 2334455566666665555443
No 360
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=38.72 E-value=1.2e+02 Score=22.59 Aligned_cols=25 Identities=8% Similarity=0.332 Sum_probs=18.2
Q ss_pred hHHHHHHHhccccHHHHHHHHHHHh
Q 044047 93 YNTLFHGLFEIHQVEHALKLFDEMQ 117 (260)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~ 117 (260)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3456777777788888887777764
No 361
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=37.68 E-value=1.7e+02 Score=23.90 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHH
Q 044047 159 GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAH 215 (260)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 215 (260)
+..-...++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|.++|+++.+.
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 4556778899999999999999999988765433 33444 5566778888877653
No 362
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=37.27 E-value=1e+02 Score=21.29 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=7.5
Q ss_pred HHhcCchhHHHHHHH
Q 044047 240 CIRNNETSKVVELLH 254 (260)
Q Consensus 240 ~~~~~~~~~a~~~~~ 254 (260)
.+..|+.+-+.-+++
T Consensus 228 A~~~g~~~~v~~Ll~ 242 (256)
T 2etb_A 228 AAKEGKIEIFRHILQ 242 (256)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHh
Confidence 345566555544443
No 363
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.10 E-value=1.6e+02 Score=23.42 Aligned_cols=141 Identities=11% Similarity=0.106 Sum_probs=90.2
Q ss_pred cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 044047 103 IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWEL 182 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 182 (260)
..+.+-|.++- .+.|++--...|..-...+...|++++|.++-..... |+--++.|.+.+-..=...|...-...+
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 35666666554 4456666666677778888899999999888776654 4456777877766655666777778888
Q ss_pred HHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 044047 183 FQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRM 256 (260)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 256 (260)
|..+.+.| ..+..---.+++.-...|+.+-....+.+ ..+..+... .-++ +..+..-|..+|.+.
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeL-GDlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEEL-GDLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHH-HHHH----HHHCSHHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHh-Hhhh----hhcCHHHHHHHHHHc
Confidence 88888776 34554444566666777777766655543 334544432 2222 334556666666543
No 364
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=36.56 E-value=79 Score=20.97 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=34.7
Q ss_pred ccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcC
Q 044047 90 VVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNG 139 (260)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 139 (260)
...++-++..++...-.+.++..+.+....| ..+..+|.--++.+++..
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQ 159 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQ 159 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 4446677778888778888888888888777 466666766666665543
No 365
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=34.53 E-value=78 Score=23.57 Aligned_cols=45 Identities=7% Similarity=0.013 Sum_probs=30.1
Q ss_pred HHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044047 182 LFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGV 226 (260)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 226 (260)
+++.+.+.|+.|...++..++..+.+.=.++.+..+|+.+...|.
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~ 275 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPD 275 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCC
Confidence 344455566666666777777777766677777777777776653
No 366
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=34.01 E-value=48 Score=16.62 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=8.7
Q ss_pred CHHHHHHHHHhhhhCCC
Q 044047 175 KLETAWELFQSLPRVGL 191 (260)
Q Consensus 175 ~~~~a~~~~~~~~~~~~ 191 (260)
+...|.++++.+.+.|-
T Consensus 8 Dv~RaiELle~lq~sge 24 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGE 24 (53)
T ss_dssp HHHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 34455555555555543
No 367
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=33.86 E-value=1e+02 Score=22.91 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 044047 25 TLIDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGI 86 (260)
Q Consensus 25 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 86 (260)
..+..+.+..++ ++++.+.+.|+.|...++.-++..+.+.=.++.+.++++-+...|.
T Consensus 202 ~~~~~ll~~~~P----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~ 259 (334)
T 2qq8_A 202 AAFEVFFEENLP----KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE 259 (334)
T ss_dssp HHHHHHHHHHCH----HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHCH----HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC
Confidence 344444443333 3566677788888888888888888877788999999999888763
No 368
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=32.50 E-value=58 Score=21.90 Aligned_cols=82 Identities=18% Similarity=0.081 Sum_probs=37.8
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc-----hHHHHHHHh
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVT-----YNTLFHGLF 101 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~~ 101 (260)
+...++.|+.+.+..+++.-.......+..-.+ .+...+..|+.+ +++.+.+.|..++... -...+...+
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRI-PLHWSVSFQAHE----ITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCC-HHHHHHHcCCHH----HHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 444566788877777776533221112222222 333344566654 3444445552222211 123344445
Q ss_pred ccccHHHHHHHH
Q 044047 102 EIHQVEHALKLF 113 (260)
Q Consensus 102 ~~~~~~~a~~~~ 113 (260)
..|+.+-+..++
T Consensus 81 ~~~~~~~~~~Ll 92 (228)
T 2dzn_A 81 SVGNLEVVKSLY 92 (228)
T ss_dssp HHCCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 566655444333
No 369
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=32.41 E-value=83 Score=21.19 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=13.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 044047 60 TLINGYCKTKDVEESLNLYSEMLS 83 (260)
Q Consensus 60 ~l~~~~~~~~~~~~a~~~~~~~~~ 83 (260)
.+|.++...|++++|.+++.++..
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666665555543
No 370
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.03 E-value=78 Score=18.43 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHH
Q 044047 196 VTYNIMIHGFCNDGQMDKAHDLFLDM 221 (260)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 221 (260)
..+......+.+.|++++|++.....
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 34555666777888888888776543
No 371
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=31.96 E-value=57 Score=18.25 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=6.6
Q ss_pred CCchhhHHHHHHHH
Q 044047 192 MPNVVTYNIMIHGF 205 (260)
Q Consensus 192 ~~~~~~~~~l~~~~ 205 (260)
+|+..||+-+...+
T Consensus 33 PpgVnTW~qI~el~ 46 (81)
T 2ko4_A 33 PPNINTWQQVTALA 46 (81)
T ss_dssp CTTTCBHHHHHHHH
T ss_pred CCCcchHHHHHHHH
Confidence 44455555444433
No 372
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.30 E-value=1.7e+02 Score=22.14 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH--HHHHHHHHhhhhCCCCCchhhHHHHHHH
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL--ETAWELFQSLPRVGLMPNVVTYNIMIHG 204 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (260)
....++.-|...|+.++|.+.++++.... .........++......++. +.+-.++..+...++-+.......+...
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~-~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~l 92 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPK-HFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNV 92 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCch-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_pred HHhcCChH----HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHhh
Q 044047 205 FCNDGQMD----KAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 205 ~~~~g~~~----~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
+....+.. .|..++.++...-+.-+......+...+...+-..-...+++.+.+
T Consensus 93 le~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k 150 (364)
T 3l6a_A 93 LDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAK 150 (364)
T ss_dssp HHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHH
T ss_pred HhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHH
No 373
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=31.22 E-value=1.2e+02 Score=20.21 Aligned_cols=151 Identities=9% Similarity=-0.043 Sum_probs=85.0
Q ss_pred CccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHH
Q 044047 89 TVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLID 168 (260)
Q Consensus 89 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (260)
+..+-...+..+...+..+ +...+..+.. .++...-...+.++...++.+.. ..+..+.. .++...-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHH
Confidence 4444444455555555533 3333333333 23555555666666666654333 33333332 456667677778
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCchhH
Q 044047 169 GLCKIGKLETAWELFQSLPRVGLMPNVVTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNCVTFNTLMLGCIRNNETSK 248 (260)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 248 (260)
++.+.++.+....+.. +.+ .++...-...+.++...|..+ +...+..+.+ .++..+-...+.++.+.+.. +
T Consensus 104 aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~ 174 (211)
T 3ltm_A 104 ALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-R 174 (211)
T ss_dssp HHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-H
T ss_pred HHHHhCcHHHHHHHHH-HHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-h
Confidence 8888887654444444 443 256666667777777777654 5555555554 35667777777888777764 4
Q ss_pred HHHHHHHH
Q 044047 249 VVELLHRM 256 (260)
Q Consensus 249 a~~~~~~m 256 (260)
+...+.++
T Consensus 175 ~~~~L~~~ 182 (211)
T 3ltm_A 175 VRAAMEKL 182 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 374
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.14 E-value=97 Score=18.97 Aligned_cols=43 Identities=14% Similarity=0.046 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhc
Q 044047 77 LYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHS 119 (260)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (260)
+|+++....+.|+...--.-+..+...++++.|..+...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555655556544433333344456788999999999888664
No 375
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=30.10 E-value=1e+02 Score=20.66 Aligned_cols=175 Identities=13% Similarity=0.129 Sum_probs=75.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCC--cchhhHHHHHHHHHhcC
Q 044047 62 INGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVA--AETSTYNTFIDGLCKNG 139 (260)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 139 (260)
+...+..|+.+.+..+++.-.......+..-. +.+...+..|+.+-+..+++.-....+. .+....+. +...+..|
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~-L~~A~~~~ 83 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP-FHIACSVG 83 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCH-HHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCC-CHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCH-HHHHHHcC
Confidence 44556778877766666553322111233323 3444455667766554444432111100 11122223 33344566
Q ss_pred cHHHHHHHHHHhhhcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCch---hhHHHHHHHHHhcCCh
Q 044047 140 YIVEAAELFRTLRVLKCEL-----GIEAYSCLIDGLCKIGKLETAWELFQSLPRVGLMPNV---VTYNIMIHGFCNDGQM 211 (260)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~ 211 (260)
+.+-+..+++ .+..+ +....+. +...+..|+.+-+..+++. |..++. .-.+ .+...+..|+.
T Consensus 84 ~~~~~~~Ll~----~g~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t-~L~~A~~~~~~ 153 (228)
T 2dzn_A 84 NLEVVKSLYD----RPLKPDLNKITNQGVTC-LHLAVGKKWFEVSQFLIEN----GASVRIKDKFNQI-PLHRAASVGSL 153 (228)
T ss_dssp CHHHHHHHHS----SSSCCCTTCCCTTCCCH-HHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCC-HHHHHHHTTCH
T ss_pred CHHHHHHHHh----CCCCcccccCCcCCCCH-HHHHHHcCCHhHHHHHHHc----CCCccccCCCCCC-HHHHHHHcCCH
Confidence 6665444443 33111 1112222 2334466777655555543 433332 1222 23334556766
Q ss_pred HHHHHHHHHHHhCC-CCCC---hhhHHHHHHHHHhcCchhHHHHHH
Q 044047 212 DKAHDLFLDMEAKG-VAPN---CVTFNTLMLGCIRNNETSKVVELL 253 (260)
Q Consensus 212 ~~a~~~~~~~~~~~-~~p~---~~~~~~l~~~~~~~~~~~~a~~~~ 253 (260)
+-+ +.+.+.| ..++ ..-.+ .+...+..|+.+-+.-++
T Consensus 154 ~~v----~~Ll~~g~~~~~~~d~~g~t-~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 154 KLI----ELLCGLGKSAVNWQDKQGWT-PLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp HHH----HHHHTTTCCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred HHH----HHHHhcCcccccCcCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence 543 3344444 3222 12122 333445566665555544
No 376
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.99 E-value=1.4e+02 Score=23.54 Aligned_cols=62 Identities=8% Similarity=0.102 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--------hhHH-HHHHHHHhcCchhHHHHHHHHHhh
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPNC--------VTFN-TLMLGCIRNNETSKVVELLHRMDE 258 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--------~~~~-~l~~~~~~~~~~~~a~~~~~~m~~ 258 (260)
..+.+.+.|.+.|+...+..+++.+...+..|+. .+|. .+...+...+++.+|.+.+....+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4677889999999999999999999877653332 3443 344667788999999888776543
No 377
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.91 E-value=1.4e+02 Score=20.59 Aligned_cols=56 Identities=9% Similarity=-0.056 Sum_probs=31.7
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCch-------hhHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNV-------VTYNTLINGYCKT---KDVEESLNLYSEMLS 83 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 83 (260)
+...++.|+.+.+..+++.+...|..++. .-.+.+..+ +.. |+.+-+..+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCc
Confidence 44556778888777777776666544332 223334333 344 666666666655433
No 378
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=29.55 E-value=59 Score=24.17 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=16.2
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 044047 155 KCELGIEAYSCLIDGLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (260)
++.|...++..++..+.+.=.++.+.++|+.+...
T Consensus 223 ~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 223 NLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp TCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 34444444444444444444445555555554443
No 379
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=29.03 E-value=1.3e+02 Score=20.18 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=9.9
Q ss_pred HHHHHhccCCHHHHHHHHHHH
Q 044047 26 LIDGFCLTGEIDRARELFVSM 46 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~ 46 (260)
+|.++.+.|++++|.+++.++
T Consensus 38 vI~GLlql~~ydea~~yI~~~ 58 (192)
T 1ixm_A 38 LIKGNLSLQKYDRVFEMIEEM 58 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444444444
No 380
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=28.88 E-value=66 Score=16.66 Aligned_cols=41 Identities=7% Similarity=-0.052 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHH
Q 044047 34 GEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESL 75 (260)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 75 (260)
...++|..+-+.+...+ .....+--.-+..+...|++++|+
T Consensus 20 HcH~EA~tIA~~L~~~~-~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 20 HCHQEAASIADWLAQEE-CMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp TCHHHHHHHHHHHHTSS-TTHHHHHHHHHHHHHHC-------
T ss_pred hHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHccchHhHhh
Confidence 34555555555554443 111111122233445556665553
No 381
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=28.82 E-value=1.1e+02 Score=19.17 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=8.4
Q ss_pred HHhccCCHHHHHHHHH
Q 044047 29 GFCLTGEIDRARELFV 44 (260)
Q Consensus 29 ~~~~~~~~~~a~~~~~ 44 (260)
..++.|+.+....+++
T Consensus 14 ~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 14 EAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHTCHHHHHHHCC
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3445566665555443
No 382
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=28.55 E-value=65 Score=16.78 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=12.1
Q ss_pred CChHHHHHHHHHHHhcC
Q 044047 69 KDVEESLNLYSEMLSKG 85 (260)
Q Consensus 69 ~~~~~a~~~~~~~~~~~ 85 (260)
-|++.|...|.++...|
T Consensus 34 Wd~~~A~~~F~~l~~~~ 50 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKG 50 (59)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 47778888887776554
No 383
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=27.90 E-value=98 Score=22.18 Aligned_cols=49 Identities=4% Similarity=0.007 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHhhhhCC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 174 GKLETAWELFQSLPRVG-LMPNVVTYNIMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 174 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
.++.....++..|.... -.|+......++++|.+.-+-.+|.+.++...
T Consensus 187 eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 187 ERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 34444455555554432 23556666666666666666666666665433
No 384
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.85 E-value=3.1e+02 Score=23.97 Aligned_cols=87 Identities=10% Similarity=0.118 Sum_probs=41.4
Q ss_pred HHHHHhcCC---hHHHHHHHHHHHhcC----CCCCccchHHHHHHHhccccHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 044047 62 INGYCKTKD---VEESLNLYSEMLSKG----IRPTVVTYNTLFHGLFEIHQVEHALKLFDEMQHSDVAAETSTYNTFIDG 134 (260)
Q Consensus 62 ~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (260)
+...+..|+ .+.|.+.|++....+ +.|+.. ..+...-.+.|..++-..+++...... +..--..++.+
T Consensus 693 l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~a 767 (909)
T 4fke_A 693 ISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRSA 767 (909)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHHH
Confidence 334444444 245556666554431 233321 122222233454444444555554432 22233456666
Q ss_pred HHhcCcHHHHHHHHHHhhh
Q 044047 135 LCKNGYIVEAAELFRTLRV 153 (260)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~ 153 (260)
++...+.....++++....
T Consensus 768 L~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 768 LACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HTTCCCHHHHHHHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHHhC
Confidence 6666677666666666554
No 385
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.63 E-value=2.7e+02 Score=23.27 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=22.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCccchHHHHHHHh
Q 044047 60 TLINGYCKTKDVEESLNLYSEMLSKGIRPTVVTYNTLFHGLF 101 (260)
Q Consensus 60 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (260)
.++-.|.++|++++|.++.++.... ...-...|..++..|+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 4556677888888888888665432 1111234555555554
No 386
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=26.70 E-value=1.3e+02 Score=19.19 Aligned_cols=27 Identities=4% Similarity=0.103 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044047 195 VVTYNIMIHGFCNDGQMDKAHDLFLDME 222 (260)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 222 (260)
+.++..+++...+.|-.+.. +.|..|.
T Consensus 77 ~~s~rd~~r~a~~~GlI~d~-~~w~~m~ 103 (146)
T 1jog_A 77 AYGFKDILREALRFGLIGDM-SKWVAYR 103 (146)
T ss_dssp SCCHHHHHHHHHHTTSCSCH-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 44555555555555555444 3444443
No 387
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.57 E-value=1.4e+02 Score=19.53 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCH--HHHHHHHHhhh
Q 044047 127 TYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKL--ETAWELFQSLP 187 (260)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~ 187 (260)
....++.-|...++.++|...++++.... ........++......++. +.+-.++..+.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34567778888899999998888876322 2222333344433333322 23445555553
No 388
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=26.55 E-value=1.9e+02 Score=23.71 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 044047 18 PNAFVYSTLIDGFCLTGEIDRARELFVS 45 (260)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 45 (260)
-|..+|...++-|...|......+++++
T Consensus 26 ~d~~~f~~~~~~~l~~g~~~~l~eilqD 53 (596)
T 4f52_E 26 EDFGLFQLAGQRCIEEGHTDQLLEIIQN 53 (596)
T ss_dssp ---CHHHHHHHHHHSSSCSHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcCcccHHHHHHHHhC
Confidence 3667899999999999999998888876
No 389
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.41 E-value=1.5e+02 Score=19.87 Aligned_cols=179 Identities=12% Similarity=0.062 Sum_probs=81.5
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc--hHHHHHHHhccc
Q 044047 27 IDGFCLTGEIDRARELFVSMDINGCMHNVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVT--YNTLFHGLFEIH 104 (260)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 104 (260)
+...++.|+.+....++..-...--.++..-++ .+...+..|+.+- ++.+.+.|..++... -.+.+...+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 555667889888888876543211112222222 3334455666544 444445565544321 123344455666
Q ss_pred cHHHHHHHHHHHhhcCCCcc---hhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCH---HHHHHHHHHHHhcCCHHH
Q 044047 105 QVEHALKLFDEMQHSDVAAE---TSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGI---EAYSCLIDGLCKIGKLET 178 (260)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 178 (260)
+.+-+..++ +.|..++ .... ..+...+..|+.+-+..+++ .+..++. ...+ .+...+..|+.+-
T Consensus 85 ~~~~v~~Ll----~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t-~L~~A~~~~~~~~ 154 (231)
T 3aji_A 85 XDEIVKALL----VKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLE----GGANPDAKDHYDAT-AMHRAAAKGNLKM 154 (231)
T ss_dssp CHHHHHHHH----HTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCC-HHHHHHHHTCHHH
T ss_pred HHHHHHHHH----HcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCc-HHHHHHHcCCHHH
Confidence 665444333 3343322 1222 23334455677665554443 2322221 1112 2333345667665
Q ss_pred HHHHHHhhhhCCCCCch---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 044047 179 AWELFQSLPRVGLMPNV---VTYNIMIHGFCNDGQMDKAHDLFLDMEAKGVAPN 229 (260)
Q Consensus 179 a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 229 (260)
+..+++ .|..++. .-.+ .+...+..|+.+- .+.+.+.|..++
T Consensus 155 v~~Ll~----~g~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~ga~~~ 199 (231)
T 3aji_A 155 VHILLF----YKASTNIQDTEGNT-PLHLACDEERVEE----AKFLVTQGASIY 199 (231)
T ss_dssp HHHHHH----TTCCSCCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCSC
T ss_pred HHHHHh----cCCCccccCCCCCC-HHHHHHHCCCHHH----HHHHHHCCCCCC
Confidence 555444 3333331 1122 2333456666554 344445555554
No 390
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.02 E-value=74 Score=16.26 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 044047 36 IDRARELFVSM 46 (260)
Q Consensus 36 ~~~a~~~~~~~ 46 (260)
++.|.+.+.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 391
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.83 E-value=1.5e+02 Score=19.62 Aligned_cols=51 Identities=4% Similarity=0.062 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 044047 106 VEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCE 157 (260)
Q Consensus 106 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (260)
.+.+..+++.+.+.|.-.|...-...+....+.|.+. ...+-.++...|++
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 4455566777777776555554455555554443222 23445555666654
No 392
>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1
Probab=25.31 E-value=1.5e+02 Score=19.60 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcCCCCchhhHHHHHHHHHhc-CChHHHHHHHHHHH
Q 044047 38 RARELFVSMDINGCMHNVVTYNTLINGYCKT-KDVEESLNLYSEML 82 (260)
Q Consensus 38 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~ 82 (260)
....+|..+.+..++.+...--.-+--++.. +++.+|-+.|-+|.
T Consensus 64 ~l~PL~~~Lr~~~L~~dil~~L~~Iv~~~q~~r~y~~And~Yl~La 109 (173)
T 1dvk_A 64 ALFPLLLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLS 109 (173)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 3456777777777666665444444445566 88999998887764
No 393
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=24.71 E-value=1.6e+02 Score=19.59 Aligned_cols=142 Identities=11% Similarity=-0.035 Sum_probs=64.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCchhh--HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CC---CccchHHHHHH
Q 044047 26 LIDGFCLTGEIDRARELFVSMDINGCMHNVVT--YNTLINGYCKTKDVEESLNLYSEMLSKGI-RP---TVVTYNTLFHG 99 (260)
Q Consensus 26 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~---~~~~~~~l~~~ 99 (260)
.+...+..|+.+-+..+++ .|..++... -.+.+...+..|+.+-+..++ +.+. .+ +..-. ..+..
T Consensus 28 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~g~-t~L~~ 98 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRLLE----ASADANIQDNMGRTPLHAAVSADAQGVFQILI----RNRATDLDARMHDGT-TPLIL 98 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH----HBTTSCTTCCCTTCC-CHHHH
T ss_pred hHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCC-cHHHH
Confidence 4555567788776655554 343333211 123344455667765444443 3332 11 12222 33444
Q ss_pred HhccccHHHHHHHHHHHhhcCCCcchhh--HHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcC---HHHHHHHHHHHHhcC
Q 044047 100 LFEIHQVEHALKLFDEMQHSDVAAETST--YNTFIDGLCKNGYIVEAAELFRTLRVLKCELG---IEAYSCLIDGLCKIG 174 (260)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 174 (260)
.+..|+.+-+..+++ .|..++... -...+...+..|+.+-+..+++. +..++ ..-.+. +...+..|
T Consensus 99 A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~-L~~A~~~~ 169 (223)
T 2f8y_A 99 AARLAVEGMLEDLIN----SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN----GANKDMQNNREETP-LFLAAREG 169 (223)
T ss_dssp HHHHTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCH-HHHHHHHT
T ss_pred HHHhCcHHHHHHHHH----cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCcCH-HHHHHHcC
Confidence 456666654444443 333332111 11233444567776665555543 32222 111222 23335667
Q ss_pred CHHHHHHHHHh
Q 044047 175 KLETAWELFQS 185 (260)
Q Consensus 175 ~~~~a~~~~~~ 185 (260)
+.+-+..+++.
T Consensus 170 ~~~~v~~Ll~~ 180 (223)
T 2f8y_A 170 SYETAKVLLDH 180 (223)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 77655555544
No 394
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=24.71 E-value=1.2e+02 Score=18.14 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=11.0
Q ss_pred HHhccCCHHHHHHHHHHHh
Q 044047 29 GFCLTGEIDRARELFVSMD 47 (260)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~ 47 (260)
..++.|++++|.+.+++..
T Consensus 29 ~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 29 KAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3455666666666665543
No 395
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.36 E-value=1.6e+02 Score=19.68 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=15.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 044047 202 IHGFCNDGQMDKAHDLFLDMEAKGV 226 (260)
Q Consensus 202 ~~~~~~~g~~~~a~~~~~~~~~~~~ 226 (260)
+...+..|+.+-+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3344566777766666666666654
No 396
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.21 E-value=80 Score=17.65 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 044047 199 NIMIHGFCNDGQMDKAHDLFLDMEA 223 (260)
Q Consensus 199 ~~l~~~~~~~g~~~~a~~~~~~~~~ 223 (260)
..+.+-|+..|+++.|..+|+...+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4566677778888888887776654
No 397
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.11 E-value=1.8e+02 Score=19.93 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=14.6
Q ss_pred HHHHHhcCCHHHHHHHHHhhhh
Q 044047 167 IDGLCKIGKLETAWELFQSLPR 188 (260)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~ 188 (260)
+..|.+.|.+++|.+++++...
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHccchHHHHHHHHHHhc
Confidence 4566777777777777777544
No 398
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.84 E-value=2.9e+02 Score=22.02 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHHHH
Q 044047 103 IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLIDGL 170 (260)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (260)
...++.|...|.+..... |.+...|+.+.-.....|+.-+|.-.|-+..... .|-+.+..++...+
T Consensus 165 ~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHH
Confidence 345677888888877764 6667778888777777777666665555444333 34444444444444
No 399
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.09 E-value=4e+02 Score=23.28 Aligned_cols=89 Identities=10% Similarity=-0.047 Sum_probs=54.3
Q ss_pred HHHHHhcccc---HHHHHHHHHHHhhcC----CCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCcCHHHHHHHHH
Q 044047 96 LFHGLFEIHQ---VEHALKLFDEMQHSD----VAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCELGIEAYSCLID 168 (260)
Q Consensus 96 l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (260)
++...+..|. .+.|.+.|+.....+ ++|+.. ..+...-.+.|..++-..+++...... +..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHH
Confidence 4455555554 456777887765432 445432 223333345566666556666665532 4444566788
Q ss_pred HHHhcCCHHHHHHHHHhhhhC
Q 044047 169 GLCKIGKLETAWELFQSLPRV 189 (260)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~ 189 (260)
+++...+.....++++.....
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCT
T ss_pred HhCCCCCHHHHHHHHHHHhCC
Confidence 888888988888888877654
No 400
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.02 E-value=1.7e+02 Score=19.12 Aligned_cols=157 Identities=11% Similarity=0.076 Sum_probs=70.3
Q ss_pred HhccCCHHHHHHHHHHHhhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc---hHHHHHHHhc-cc
Q 044047 30 FCLTGEIDRARELFVSMDINGCMH-NVVTYNTLINGYCKTKDVEESLNLYSEMLSKGIRPTVVT---YNTLFHGLFE-IH 104 (260)
Q Consensus 30 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~-~~ 104 (260)
.++.|+++....++.. +... +...-.+.+...+..|+.+.-.++.+-+.+.|..++... .+.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3466777776655543 2111 101112344555566666666667777777776665432 2223222221 22
Q ss_pred cHHHHHHHHHHHhhcCCCcchh---hHHHHHHHHHhcCcH-HHHHHHHHHhhh-cCCCcCHH---HHHHHHHHHHhcCCH
Q 044047 105 QVEHALKLFDEMQHSDVAAETS---TYNTFIDGLCKNGYI-VEAAELFRTLRV-LKCELGIE---AYSCLIDGLCKIGKL 176 (260)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~-~~a~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~ 176 (260)
+.....++.+.+.+.|..++.. -.+..+...+..+.. .....+++.+.. .|..++.. -.+. +....+.|+.
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp-L~~A~~~~~~ 167 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA-LEFVKRCQKP 167 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH-HHHHHTTTCH
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH-HHHHHHcCCH
Confidence 3334455666666666444321 110222222223322 233445555555 44443321 1122 2333455665
Q ss_pred HHHHHHHHhhhhCCC
Q 044047 177 ETAWELFQSLPRVGL 191 (260)
Q Consensus 177 ~~a~~~~~~~~~~~~ 191 (260)
+...-+.+...+.+.
T Consensus 168 ~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 168 IALKMMEDYIKKYNL 182 (186)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 554444444444443
No 401
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=22.01 E-value=1.9e+02 Score=20.41 Aligned_cols=24 Identities=4% Similarity=-0.005 Sum_probs=10.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHH
Q 044047 197 TYNIMIHGFCNDGQMDKAHDLFLD 220 (260)
Q Consensus 197 ~~~~l~~~~~~~g~~~~a~~~~~~ 220 (260)
.|..++.++...+..+.+..+|+.
T Consensus 155 ly~~li~gL~~~~~~~~~l~FF~~ 178 (244)
T 3b5o_A 155 LIVKLVEWLHEGAIPKDLQYFFSK 178 (244)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhHHHHHHH
Confidence 344444444444444444444443
No 402
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.33 E-value=5e+02 Score=24.11 Aligned_cols=79 Identities=14% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHhc---------------cccHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCc
Q 044047 94 NTLFHGLFE---------------IHQVEHALKLFDEMQHSDVAAETSTYNTFIDGLCKNGYIVEAAELFRTLRVLKCEL 158 (260)
Q Consensus 94 ~~l~~~~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (260)
+.|+.++++ ....+...+.|.++.+---..|.......+.....++++..|++++.++.+. .+
T Consensus 1238 ~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~ 1315 (1354)
T 3lxu_X 1238 NTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KR 1315 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cc
Q ss_pred CHHHHHHHHHHHHhcC
Q 044047 159 GIEAYSCLIDGLCKIG 174 (260)
Q Consensus 159 ~~~~~~~l~~~~~~~~ 174 (260)
+...|..++..+...|
T Consensus 1316 ~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1316 TRDHFVELAAINGALG 1331 (1354)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHcC
No 403
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=21.27 E-value=1.4e+02 Score=17.75 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=11.7
Q ss_pred HHHhccCCHHHHHHHHHHHh
Q 044047 28 DGFCLTGEIDRARELFVSMD 47 (260)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~~~ 47 (260)
--.++.|++++|.+.+++..
T Consensus 26 l~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 26 LKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 33456666666666665543
No 404
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=21.09 E-value=2.3e+02 Score=20.05 Aligned_cols=20 Identities=5% Similarity=-0.175 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCHHHHHHHH
Q 044047 24 STLIDGFCLTGEIDRARELF 43 (260)
Q Consensus 24 ~~l~~~~~~~~~~~~a~~~~ 43 (260)
.+.+...+..|+.++..++.
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~ 35 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSK 35 (285)
T ss_dssp --------------------
T ss_pred HHHHHHHhhcCCCCCcccCC
Confidence 34455555566655555543
No 405
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.96 E-value=1.5e+02 Score=17.92 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh-CCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 044047 140 YIVEAAELFRTLRVLKCELGIEAYSCLIDGLCKIGKLETAWELFQSLPR-VGLMPNVVTYNIMIHGFCNDGQMDKAHDLF 218 (260)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 218 (260)
.+..|..-+++.... +++......++..+-.. ++.++++.+...+ .|+ .+.++...++...+.|-.+.. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 466777777777554 45666666666554332 4555555555443 455 356777788888888877655 566
Q ss_pred HHHHhCCCCCChhhHHHHH--HHHHh-cCchhHHHHHHHHHhh
Q 044047 219 LDMEAKGVAPNCVTFNTLM--LGCIR-NNETSKVVELLHRMDE 258 (260)
Q Consensus 219 ~~~~~~~~~p~~~~~~~l~--~~~~~-~~~~~~a~~~~~~m~~ 258 (260)
..|.... ...+.+|+... ..+.. ....+...++.+.+.+
T Consensus 76 ~~m~~~R-N~~vH~Y~~~~a~~v~~~i~~~l~~~~~l~~~i~~ 117 (119)
T 1wty_A 76 LEMLELR-NLTNHTYDEALAERIYAELPKALERFQELLRRLEE 117 (119)
T ss_dssp HHHHHHH-HHGGGTTSHHHHHHHHTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHh-hHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665431 11334444332 12211 1344555555555543
No 406
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=20.08 E-value=2.4e+02 Score=20.04 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhcCC-------CCchhhHHHHHHHHHhcC---------ChHHHHHHHHHHHhcCCC-CCccchHHHHH
Q 044047 36 IDRARELFVSMDINGC-------MHNVVTYNTLINGYCKTK---------DVEESLNLYSEMLSKGIR-PTVVTYNTLFH 98 (260)
Q Consensus 36 ~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 98 (260)
.+.|..++.+|--..+ .....-|..+..+|.+.| +.+-...+++-..+.|++ .=++.|..+++
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 5678888888843211 234566888888888876 345667777777787764 23577888887
Q ss_pred HHhccccHHHHHHHHHHHhh
Q 044047 99 GLFEIHQVEHALKLFDEMQH 118 (260)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~ 118 (260)
--.-.-+++++.+++..+++
T Consensus 250 k~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 66666778888888877654
Done!