Query 044048
Match_columns 269
No_of_seqs 169 out of 1309
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 10:59:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02748 tRNA dimethylallyltra 100.0 3.9E-76 8.5E-81 568.7 26.9 262 1-268 28-399 (468)
2 PLN02165 adenylate isopentenyl 100.0 2.1E-73 4.5E-78 528.4 26.0 265 1-267 49-334 (334)
3 PRK14729 miaA tRNA delta(2)-is 100.0 7.5E-73 1.6E-77 520.1 22.1 212 1-231 10-288 (300)
4 COG0324 MiaA tRNA delta(2)-iso 100.0 4.6E-71 1E-75 507.4 22.3 213 1-231 9-290 (308)
5 KOG1384 tRNA delta(2)-isopente 100.0 4.6E-69 9.9E-74 491.7 21.2 265 1-266 13-295 (348)
6 TIGR00174 miaA tRNA isopenteny 100.0 1E-68 2.2E-73 490.3 21.9 214 1-232 5-286 (287)
7 PRK00091 miaA tRNA delta(2)-is 100.0 2.1E-65 4.6E-70 473.1 22.3 211 1-229 10-287 (307)
8 PLN02840 tRNA dimethylallyltra 100.0 6.6E-65 1.4E-69 484.0 22.5 217 1-232 27-346 (421)
9 PF01715 IPPT: IPP transferase 100.0 9.2E-61 2E-65 431.7 20.1 184 29-230 1-252 (253)
10 PF01745 IPT: Isopentenyl tran 100.0 5.5E-33 1.2E-37 242.6 16.2 210 1-217 7-225 (233)
11 PRK04220 2-phosphoglycerate ki 99.3 7.5E-12 1.6E-16 115.6 7.0 122 1-137 98-239 (301)
12 COG0703 AroK Shikimate kinase 99.1 1.2E-10 2.6E-15 99.5 6.6 138 1-173 8-148 (172)
13 TIGR03263 guanyl_kin guanylate 99.1 1.8E-11 3.9E-16 103.8 0.8 115 1-134 7-134 (180)
14 PRK00300 gmk guanylate kinase; 99.1 3.6E-11 7.9E-16 104.0 1.5 114 1-134 11-138 (205)
15 cd00071 GMPK Guanosine monopho 99.1 6.2E-11 1.3E-15 97.5 2.6 106 1-122 5-120 (137)
16 TIGR01313 therm_gnt_kin carboh 98.9 6.9E-09 1.5E-13 86.7 10.6 111 1-134 4-115 (163)
17 PRK11545 gntK gluconate kinase 98.9 9.4E-09 2E-13 86.9 11.2 110 1-134 1-112 (163)
18 PRK00131 aroK shikimate kinase 98.9 2.2E-09 4.7E-14 89.6 7.0 109 1-134 10-118 (175)
19 PRK05057 aroK shikimate kinase 98.9 2.6E-09 5.6E-14 91.1 7.4 108 1-133 10-117 (172)
20 PRK13946 shikimate kinase; Pro 98.9 4E-09 8.6E-14 90.6 6.6 108 1-134 16-124 (184)
21 PRK00625 shikimate kinase; Pro 98.8 1.7E-08 3.7E-13 86.5 7.2 127 1-152 6-134 (173)
22 PRK13948 shikimate kinase; Pro 98.8 1.4E-08 3.1E-13 87.7 6.4 127 1-152 16-143 (182)
23 PRK06217 hypothetical protein; 98.7 6.6E-08 1.4E-12 82.8 10.1 99 1-134 7-105 (183)
24 cd00464 SK Shikimate kinase (S 98.7 2.7E-08 5.9E-13 81.6 7.0 108 1-133 5-112 (154)
25 PF13671 AAA_33: AAA domain; P 98.7 2.5E-08 5.5E-13 80.8 6.4 111 1-135 5-120 (143)
26 PRK13947 shikimate kinase; Pro 98.7 5.6E-08 1.2E-12 81.6 7.8 108 1-133 7-114 (171)
27 PRK13949 shikimate kinase; Pro 98.7 5.6E-08 1.2E-12 82.7 7.3 107 1-132 7-113 (169)
28 PF01202 SKI: Shikimate kinase 98.7 3.9E-08 8.4E-13 82.4 6.2 106 4-135 1-107 (158)
29 COG3265 GntK Gluconate kinase 98.7 9.8E-08 2.1E-12 79.7 8.1 127 1-152 1-130 (161)
30 PRK07261 topology modulation p 98.7 1.7E-07 3.8E-12 79.7 9.8 95 1-134 6-100 (171)
31 PRK10078 ribose 1,5-bisphospho 98.6 2.2E-07 4.8E-12 79.7 10.3 106 1-133 8-131 (186)
32 PRK14737 gmk guanylate kinase; 98.6 9.3E-09 2E-13 89.0 1.1 115 1-133 10-137 (186)
33 cd02021 GntK Gluconate kinase 98.6 2.5E-07 5.5E-12 76.0 9.2 114 1-134 5-119 (150)
34 PRK03731 aroL shikimate kinase 98.6 8.4E-08 1.8E-12 80.7 5.6 106 1-133 8-114 (171)
35 smart00072 GuKc Guanylate kina 98.6 5.7E-07 1.2E-11 77.1 10.6 116 1-133 8-135 (184)
36 PRK08118 topology modulation p 98.5 7.5E-07 1.6E-11 75.7 10.2 95 1-135 7-101 (167)
37 PLN02199 shikimate kinase 98.5 3.5E-07 7.5E-12 84.6 8.2 105 1-132 108-214 (303)
38 PF13207 AAA_17: AAA domain; P 98.5 2E-07 4.4E-12 73.6 5.7 29 1-29 5-33 (121)
39 PRK14021 bifunctional shikimat 98.5 1.4E-07 3.1E-12 94.0 5.7 127 1-152 12-143 (542)
40 PF00625 Guanylate_kin: Guanyl 98.5 6.9E-07 1.5E-11 76.4 8.9 108 1-133 8-135 (183)
41 PRK03839 putative kinase; Prov 98.5 4.4E-07 9.4E-12 77.2 7.4 29 1-29 6-34 (180)
42 PRK09825 idnK D-gluconate kina 98.5 1.3E-06 2.7E-11 75.0 9.9 110 1-134 9-120 (176)
43 PRK06762 hypothetical protein; 98.4 1E-06 2.3E-11 73.7 8.9 117 1-152 8-133 (166)
44 PRK04182 cytidylate kinase; Pr 98.4 4.3E-07 9.3E-12 76.2 6.3 107 1-133 6-112 (180)
45 PRK13951 bifunctional shikimat 98.4 3.4E-07 7.4E-12 90.2 6.5 125 1-152 6-130 (488)
46 PRK05541 adenylylsulfate kinas 98.4 8.5E-07 1.8E-11 75.1 7.8 119 1-152 13-138 (176)
47 COG1102 Cmk Cytidylate kinase 98.4 1.7E-06 3.7E-11 73.5 8.8 107 1-150 6-123 (179)
48 TIGR01360 aden_kin_iso1 adenyl 98.4 1.3E-06 2.7E-11 74.0 8.0 116 1-133 9-127 (188)
49 PRK08233 hypothetical protein; 98.4 2.3E-06 5E-11 72.0 9.4 109 1-134 9-119 (182)
50 COG0194 Gmk Guanylate kinase [ 98.4 2.1E-07 4.5E-12 80.5 2.7 114 1-133 10-135 (191)
51 PHA02530 pseT polynucleotide k 98.3 4.1E-06 8.9E-11 76.6 11.1 109 1-133 8-123 (300)
52 TIGR03574 selen_PSTK L-seryl-t 98.3 2.2E-06 4.7E-11 76.9 8.8 107 1-134 5-117 (249)
53 cd02024 NRK1 Nicotinamide ribo 98.3 2.5E-06 5.4E-11 74.1 8.2 31 1-31 5-36 (187)
54 PRK06547 hypothetical protein; 98.3 4.1E-06 8.9E-11 71.7 9.3 118 1-133 21-138 (172)
55 cd00227 CPT Chloramphenicol (C 98.3 7.2E-06 1.6E-10 69.6 10.2 118 1-136 8-134 (175)
56 cd01428 ADK Adenylate kinase ( 98.3 4.8E-06 1E-10 70.9 9.1 29 1-29 5-33 (194)
57 PRK14531 adenylate kinase; Pro 98.3 4.3E-06 9.4E-11 71.6 8.8 29 1-29 8-36 (183)
58 PRK08154 anaerobic benzoate ca 98.3 2E-06 4.3E-11 80.0 7.1 109 1-133 139-247 (309)
59 TIGR01359 UMP_CMP_kin_fam UMP- 98.3 5.5E-06 1.2E-10 70.2 9.1 115 1-134 5-125 (183)
60 cd02020 CMPK Cytidine monophos 98.3 3E-06 6.5E-11 68.6 7.1 100 1-134 5-104 (147)
61 PRK14738 gmk guanylate kinase; 98.2 4.5E-07 9.8E-12 79.4 2.3 117 1-134 19-146 (206)
62 PRK05800 cobU adenosylcobinami 98.2 8.3E-07 1.8E-11 75.8 3.8 87 1-102 7-94 (170)
63 TIGR02322 phosphon_PhnN phosph 98.2 1.2E-05 2.5E-10 68.1 10.4 48 78-133 84-131 (179)
64 TIGR02173 cyt_kin_arch cytidyl 98.2 2.9E-06 6.3E-11 70.7 6.5 28 1-28 6-33 (171)
65 PRK12338 hypothetical protein; 98.2 8.3E-06 1.8E-10 76.3 10.1 133 1-138 10-155 (319)
66 cd02025 PanK Pantothenate kina 98.2 9.5E-06 2.1E-10 72.0 9.9 119 1-138 5-154 (220)
67 TIGR01663 PNK-3'Pase polynucle 98.2 5.5E-06 1.2E-10 82.3 8.4 92 1-134 375-469 (526)
68 PRK14532 adenylate kinase; Pro 98.2 6.9E-06 1.5E-10 70.2 7.7 30 1-30 6-35 (188)
69 PRK14530 adenylate kinase; Pro 98.1 1.3E-05 2.8E-10 70.3 9.3 30 1-30 9-38 (215)
70 TIGR00017 cmk cytidylate kinas 98.1 9.9E-06 2.2E-10 71.8 8.6 29 1-29 8-36 (217)
71 TIGR01351 adk adenylate kinase 98.1 1.1E-05 2.4E-10 70.4 8.3 117 1-133 5-124 (210)
72 PF06414 Zeta_toxin: Zeta toxi 98.1 1.6E-05 3.4E-10 69.0 9.1 116 1-137 21-145 (199)
73 PF13238 AAA_18: AAA domain; P 98.1 1.3E-06 2.8E-11 68.9 1.7 19 1-19 4-22 (129)
74 PRK01184 hypothetical protein; 98.1 9E-06 1.9E-10 69.2 6.8 115 1-134 7-125 (184)
75 PRK12337 2-phosphoglycerate ki 98.1 1.5E-05 3.3E-10 77.9 8.7 129 1-138 261-409 (475)
76 PRK14528 adenylate kinase; Pro 98.1 8.9E-06 1.9E-10 70.1 6.3 29 1-29 7-35 (186)
77 PLN02200 adenylate kinase fami 98.0 1.7E-05 3.6E-10 71.1 8.1 30 1-30 49-78 (234)
78 TIGR00152 dephospho-CoA kinase 98.0 2.3E-05 4.9E-10 67.3 8.4 33 1-33 5-39 (188)
79 PRK00081 coaE dephospho-CoA ki 98.0 2.5E-05 5.5E-10 67.7 8.5 28 1-29 8-35 (194)
80 PRK00279 adk adenylate kinase; 98.0 2.6E-05 5.7E-10 68.3 8.6 29 1-29 6-34 (215)
81 COG1072 CoaA Panthothenate kin 98.0 3.2E-05 7E-10 70.7 9.2 118 1-136 88-234 (283)
82 PRK12339 2-phosphoglycerate ki 98.0 4.6E-05 1E-09 66.6 9.9 124 1-136 9-143 (197)
83 PRK14527 adenylate kinase; Pro 98.0 1.3E-05 2.8E-10 69.0 6.2 29 1-29 12-40 (191)
84 KOG3347 Predicted nucleotide k 98.0 2.5E-05 5.4E-10 65.7 7.3 97 1-134 13-114 (176)
85 PTZ00301 uridine kinase; Provi 98.0 2.6E-05 5.6E-10 68.9 7.9 114 1-134 9-148 (210)
86 PRK08356 hypothetical protein; 97.9 4.9E-05 1.1E-09 65.7 8.9 28 1-29 11-38 (195)
87 PRK02496 adk adenylate kinase; 97.9 2.6E-05 5.7E-10 66.4 6.9 29 1-29 7-35 (184)
88 PTZ00088 adenylate kinase 1; P 97.9 4.6E-05 1E-09 68.2 8.2 117 1-133 12-130 (229)
89 cd02027 APSK Adenosine 5'-phos 97.9 9.8E-05 2.1E-09 61.3 9.4 105 1-130 5-114 (149)
90 PLN02772 guanylate kinase 97.9 1.2E-05 2.7E-10 77.0 4.2 114 1-133 141-268 (398)
91 PRK00889 adenylylsulfate kinas 97.9 0.00011 2.4E-09 62.1 9.4 103 1-130 10-117 (175)
92 cd02028 UMPK_like Uridine mono 97.9 5.6E-05 1.2E-09 64.8 7.7 33 1-33 5-42 (179)
93 COG0645 Predicted kinase [Gene 97.8 9.6E-05 2.1E-09 63.1 8.6 111 1-135 7-126 (170)
94 PRK13477 bifunctional pantoate 97.8 0.00011 2.3E-09 73.0 10.2 33 1-35 290-322 (512)
95 PRK05480 uridine/cytidine kina 97.8 9.7E-05 2.1E-09 64.2 8.7 30 1-30 12-44 (209)
96 cd02023 UMPK Uridine monophosp 97.8 8.4E-05 1.8E-09 64.0 8.1 33 1-35 5-40 (198)
97 TIGR00554 panK_bact pantothena 97.8 8.6E-05 1.9E-09 68.7 8.6 125 1-139 68-223 (290)
98 cd02022 DPCK Dephospho-coenzym 97.8 0.00011 2.3E-09 62.7 8.4 28 1-29 5-32 (179)
99 PRK06696 uridine kinase; Valid 97.8 0.00012 2.5E-09 64.7 8.4 31 1-31 28-63 (223)
100 PRK14731 coaE dephospho-CoA ki 97.8 4.3E-05 9.3E-10 67.0 5.5 27 1-28 11-37 (208)
101 COG0572 Udk Uridine kinase [Nu 97.8 0.00017 3.6E-09 64.1 9.2 42 1-48 14-58 (218)
102 KOG3354 Gluconate kinase [Carb 97.7 8.6E-05 1.9E-09 62.9 6.8 134 1-152 18-157 (191)
103 PRK09270 nucleoside triphospha 97.7 0.00019 4E-09 63.7 9.0 130 1-151 39-197 (229)
104 PRK07667 uridine kinase; Provi 97.7 1.9E-05 4.2E-10 68.3 2.1 29 1-29 23-56 (193)
105 TIGR00235 udk uridine kinase. 97.7 0.00022 4.8E-09 62.1 8.4 29 1-29 12-43 (207)
106 PF00485 PRK: Phosphoribulokin 97.6 4.2E-05 9E-10 66.0 3.3 21 1-21 5-25 (194)
107 PRK00023 cmk cytidylate kinase 97.6 0.00013 2.8E-09 65.0 6.4 29 1-29 10-38 (225)
108 PRK04040 adenylate kinase; Pro 97.6 0.00029 6.3E-09 61.0 8.5 29 1-29 8-38 (188)
109 PF00406 ADK: Adenylate kinase 97.6 0.00014 3E-09 60.1 6.0 30 1-30 2-31 (151)
110 PRK14734 coaE dephospho-CoA ki 97.6 0.00015 3.2E-09 63.4 6.3 32 1-33 7-40 (200)
111 PRK13808 adenylate kinase; Pro 97.6 0.00019 4.1E-09 67.7 7.4 30 1-30 6-35 (333)
112 COG2074 2-phosphoglycerate kin 97.6 0.002 4.3E-08 58.7 13.3 179 2-205 96-291 (299)
113 PRK05439 pantothenate kinase; 97.6 0.00032 6.9E-09 65.6 8.6 120 1-136 92-240 (311)
114 TIGR00455 apsK adenylylsulfate 97.6 0.00061 1.3E-08 58.0 9.6 100 1-130 24-133 (184)
115 KOG2702 Predicted panthothenat 97.5 6.9E-05 1.5E-09 67.3 3.6 131 1-151 125-297 (323)
116 COG4088 Predicted nucleotide k 97.5 0.00063 1.4E-08 60.3 9.5 110 1-133 7-122 (261)
117 PRK00698 tmk thymidylate kinas 97.5 0.00027 5.9E-09 60.6 6.8 21 113-133 128-148 (205)
118 PF07931 CPT: Chloramphenicol 97.5 0.00052 1.1E-08 59.0 8.3 113 2-136 8-133 (174)
119 PRK05537 bifunctional sulfate 97.5 0.00051 1.1E-08 69.1 9.1 121 1-152 398-528 (568)
120 PF08433 KTI12: Chromatin asso 97.5 0.00045 9.7E-09 63.3 7.9 148 1-174 7-170 (270)
121 PF00004 AAA: ATPase family as 97.5 0.00029 6.2E-09 55.6 5.8 32 1-32 4-35 (132)
122 PRK03846 adenylylsulfate kinas 97.4 0.00075 1.6E-08 58.4 8.8 101 1-129 30-138 (198)
123 cd01672 TMPK Thymidine monopho 97.4 0.001 2.2E-08 56.2 9.4 22 113-134 126-147 (200)
124 TIGR03575 selen_PSTK_euk L-ser 97.4 0.00086 1.9E-08 63.5 9.7 33 112-149 154-186 (340)
125 PLN02348 phosphoribulokinase 97.4 0.0005 1.1E-08 66.1 7.5 32 1-32 55-106 (395)
126 COG1936 Predicted nucleotide k 97.4 0.00053 1.1E-08 58.9 6.7 97 1-133 6-103 (180)
127 PF01583 APS_kinase: Adenylyls 97.3 0.0017 3.6E-08 55.0 9.5 101 1-129 8-116 (156)
128 TIGR02881 spore_V_K stage V sp 97.3 0.00061 1.3E-08 61.6 7.2 29 1-29 48-83 (261)
129 cd01673 dNK Deoxyribonucleosid 97.3 0.0016 3.6E-08 55.6 9.5 24 113-136 125-148 (193)
130 PLN02674 adenylate kinase 97.3 0.00076 1.7E-08 61.0 7.3 30 1-30 37-66 (244)
131 PRK14526 adenylate kinase; Pro 97.3 0.0009 1.9E-08 59.1 7.6 30 1-30 6-35 (211)
132 PRK11860 bifunctional 3-phosph 97.3 0.00046 9.9E-09 70.6 6.5 33 1-35 448-480 (661)
133 PRK03333 coaE dephospho-CoA ki 97.3 0.00068 1.5E-08 65.3 6.9 28 1-29 7-34 (395)
134 COG0563 Adk Adenylate kinase a 97.2 0.00015 3.3E-09 62.4 2.2 30 1-30 6-35 (178)
135 cd02030 NDUO42 NADH:Ubiquinone 97.2 0.0048 1E-07 54.4 11.7 27 2-28 6-32 (219)
136 PRK14732 coaE dephospho-CoA ki 97.1 0.00046 9.9E-09 60.2 4.1 28 1-29 5-32 (196)
137 cd00544 CobU Adenosylcobinamid 97.1 0.0004 8.6E-09 59.3 3.6 86 1-102 5-91 (169)
138 PLN02459 probable adenylate ki 97.1 0.0014 3E-08 59.8 7.3 30 1-30 35-64 (261)
139 PRK07429 phosphoribulokinase; 97.1 0.0035 7.6E-08 59.0 10.2 30 1-30 14-46 (327)
140 PRK06620 hypothetical protein; 97.1 0.0032 6.9E-08 55.6 9.4 25 1-25 50-74 (214)
141 PRK14529 adenylate kinase; Pro 97.1 0.0022 4.7E-08 57.3 8.3 28 1-28 6-33 (223)
142 PLN02318 phosphoribulokinase/u 97.1 0.00025 5.5E-09 71.4 2.4 30 1-30 71-101 (656)
143 PRK14730 coaE dephospho-CoA ki 97.1 0.00032 7E-09 61.0 2.6 33 1-33 7-41 (195)
144 COG0396 sufC Cysteine desulfur 97.1 0.00098 2.1E-08 59.8 5.5 73 1-78 36-110 (251)
145 PLN02422 dephospho-CoA kinase 97.1 0.00068 1.5E-08 60.9 4.5 28 1-29 7-34 (232)
146 PRK05506 bifunctional sulfate 97.0 0.0035 7.5E-08 63.8 9.8 100 1-130 466-575 (632)
147 PRK13975 thymidylate kinase; P 97.0 0.0024 5.3E-08 54.5 7.2 22 1-22 8-29 (196)
148 PLN02842 nucleotide kinase 97.0 0.0036 7.8E-08 62.1 9.0 29 1-29 3-31 (505)
149 PF01121 CoaE: Dephospho-CoA k 97.0 0.0011 2.5E-08 57.1 4.8 28 1-29 6-33 (180)
150 PRK05416 glmZ(sRNA)-inactivati 96.9 0.0057 1.2E-07 56.6 9.7 21 112-132 85-105 (288)
151 PHA00729 NTP-binding motif con 96.9 0.0028 6E-08 56.7 7.3 20 1-20 23-42 (226)
152 PRK06893 DNA replication initi 96.9 0.0091 2E-07 53.0 10.4 84 1-93 45-133 (229)
153 COG0237 CoaE Dephospho-CoA kin 96.9 0.0018 3.9E-08 56.9 5.4 32 1-33 8-41 (201)
154 smart00382 AAA ATPases associa 96.8 0.00074 1.6E-08 52.2 2.5 22 1-22 8-29 (148)
155 COG1219 ClpX ATP-dependent pro 96.8 0.00077 1.7E-08 63.2 2.8 31 1-31 103-133 (408)
156 TIGR00041 DTMP_kinase thymidyl 96.8 0.0038 8.3E-08 53.2 7.0 21 1-21 9-29 (195)
157 PRK09087 hypothetical protein; 96.8 0.01 2.2E-07 52.9 9.7 115 1-136 50-168 (226)
158 PRK08084 DNA replication initi 96.8 0.0055 1.2E-07 54.7 8.0 122 1-135 51-181 (235)
159 cd02026 PRK Phosphoribulokinas 96.8 0.0073 1.6E-07 55.4 8.9 29 1-29 5-36 (273)
160 KOG3308 Uncharacterized protei 96.7 0.0036 7.8E-08 55.1 6.1 32 1-34 10-42 (225)
161 cd00009 AAA The AAA+ (ATPases 96.7 0.0025 5.4E-08 49.9 4.7 34 1-34 25-61 (151)
162 PF00448 SRP54: SRP54-type pro 96.7 0.00075 1.6E-08 58.9 1.8 30 1-30 7-41 (196)
163 PRK09518 bifunctional cytidyla 96.7 0.0087 1.9E-07 61.8 9.8 34 1-36 7-40 (712)
164 COG0283 Cmk Cytidylate kinase 96.6 0.0013 2.8E-08 58.4 2.5 32 2-35 11-42 (222)
165 PF06309 Torsin: Torsin; Inte 96.6 0.0056 1.2E-07 50.1 6.0 65 2-88 60-124 (127)
166 PF13173 AAA_14: AAA domain 96.6 0.0022 4.7E-08 51.6 3.6 83 1-96 8-100 (128)
167 PRK13973 thymidylate kinase; P 96.6 0.0077 1.7E-07 52.8 7.2 22 113-134 129-150 (213)
168 TIGR00390 hslU ATP-dependent p 96.5 0.0017 3.8E-08 63.0 3.1 32 1-32 53-84 (441)
169 COG3709 Uncharacterized compon 96.5 0.03 6.5E-07 48.0 10.2 105 1-134 11-136 (192)
170 PRK08903 DnaA regulatory inact 96.5 0.022 4.7E-07 50.0 9.7 29 1-29 48-81 (227)
171 PF13189 Cytidylate_kin2: Cyti 96.5 0.0099 2.1E-07 50.8 7.3 121 2-133 6-134 (179)
172 PF07728 AAA_5: AAA domain (dy 96.5 0.0017 3.6E-08 52.5 2.4 24 1-24 5-28 (139)
173 PRK14733 coaE dephospho-CoA ki 96.5 0.0019 4.1E-08 56.9 2.8 29 1-29 12-40 (204)
174 KOG3877 NADH:ubiquinone oxidor 96.5 0.04 8.7E-07 51.0 11.3 123 2-133 78-238 (393)
175 PRK05201 hslU ATP-dependent pr 96.5 0.0017 3.6E-08 63.2 2.5 30 1-30 56-85 (443)
176 PF07724 AAA_2: AAA domain (Cd 96.4 0.0019 4.1E-08 55.2 2.3 30 1-30 9-42 (171)
177 PRK14961 DNA polymerase III su 96.4 0.022 4.7E-07 54.1 9.4 22 1-22 44-65 (363)
178 cd03115 SRP The signal recogni 96.3 0.012 2.5E-07 49.5 6.6 29 1-29 6-39 (173)
179 cd02019 NK Nucleoside/nucleoti 96.3 0.0032 6.9E-08 45.5 2.6 19 1-19 5-23 (69)
180 PRK06761 hypothetical protein; 96.3 0.052 1.1E-06 50.2 11.1 128 1-152 9-146 (282)
181 PRK05342 clpX ATP-dependent pr 96.2 0.0027 5.9E-08 61.5 2.6 30 1-30 114-143 (412)
182 CHL00181 cbbX CbbX; Provisiona 96.2 0.014 3.1E-07 53.8 6.9 125 1-129 65-204 (287)
183 PRK14956 DNA polymerase III su 96.2 0.024 5.1E-07 56.1 8.7 22 1-22 46-67 (484)
184 PTZ00451 dephospho-CoA kinase; 96.1 0.0033 7.2E-08 56.9 2.4 29 1-29 7-35 (244)
185 KOG0707 Guanylate kinase [Nucl 96.1 0.015 3.3E-07 52.0 6.6 119 1-138 43-175 (231)
186 cd01918 HprK_C HprK/P, the bif 96.1 0.0038 8.3E-08 52.4 2.5 60 1-61 20-79 (149)
187 PF05496 RuvB_N: Holliday junc 96.1 0.0042 9.1E-08 55.7 2.9 77 1-93 56-137 (233)
188 PF06068 TIP49: TIP49 C-termin 96.1 0.0032 7E-08 60.1 2.2 33 1-33 56-90 (398)
189 COG1223 Predicted ATPase (AAA+ 96.1 0.02 4.3E-07 52.7 7.0 107 1-142 157-283 (368)
190 PRK05642 DNA replication initi 96.0 0.028 6.1E-07 50.1 7.9 119 1-134 51-179 (234)
191 COG4639 Predicted kinase [Gene 96.0 0.034 7.3E-07 47.3 7.6 107 1-133 8-117 (168)
192 PRK00149 dnaA chromosomal repl 96.0 0.039 8.5E-07 53.8 9.3 143 1-152 154-310 (450)
193 PRK14722 flhF flagellar biosyn 96.0 0.014 3E-07 56.0 6.0 29 1-29 143-178 (374)
194 CHL00195 ycf46 Ycf46; Provisio 96.0 0.014 3E-07 57.9 6.1 34 1-34 265-298 (489)
195 KOG0745 Putative ATP-dependent 95.9 0.0049 1.1E-07 60.0 2.7 33 1-33 232-264 (564)
196 TIGR00382 clpX endopeptidase C 95.9 0.0051 1.1E-07 59.7 2.7 30 1-30 122-151 (413)
197 PRK15453 phosphoribulokinase; 95.9 0.0054 1.2E-07 56.7 2.7 33 1-33 11-48 (290)
198 COG0529 CysC Adenylylsulfate k 95.9 0.075 1.6E-06 46.2 9.4 101 1-129 29-137 (197)
199 TIGR02880 cbbX_cfxQ probable R 95.8 0.031 6.7E-07 51.4 7.5 19 1-19 64-82 (284)
200 PRK12724 flagellar biosynthesi 95.8 0.0073 1.6E-07 58.8 3.4 30 1-30 229-264 (432)
201 cd02029 PRK_like Phosphoribulo 95.8 0.0059 1.3E-07 56.1 2.5 34 1-34 5-43 (277)
202 PRK06645 DNA polymerase III su 95.8 0.044 9.6E-07 54.6 8.8 22 1-22 49-70 (507)
203 TIGR02640 gas_vesic_GvpN gas v 95.8 0.0064 1.4E-07 55.1 2.7 24 1-24 27-50 (262)
204 PRK13974 thymidylate kinase; P 95.7 0.04 8.6E-07 48.3 7.2 20 1-20 9-28 (212)
205 PRK14088 dnaA chromosomal repl 95.7 0.064 1.4E-06 52.4 9.3 19 1-19 136-154 (440)
206 PF00308 Bac_DnaA: Bacterial d 95.7 0.015 3.3E-07 51.4 4.5 127 1-133 40-177 (219)
207 PRK12323 DNA polymerase III su 95.6 0.08 1.7E-06 54.3 10.1 21 1-21 44-64 (700)
208 COG1419 FlhF Flagellar GTP-bin 95.6 0.0067 1.4E-07 58.5 2.3 30 1-30 209-245 (407)
209 TIGR03499 FlhF flagellar biosy 95.6 0.0084 1.8E-07 55.1 2.7 29 1-29 200-235 (282)
210 PF02223 Thymidylate_kin: Thym 95.6 0.04 8.7E-07 46.7 6.6 23 113-135 119-141 (186)
211 COG1220 HslU ATP-dependent pro 95.5 0.0084 1.8E-07 56.8 2.5 28 1-28 56-83 (444)
212 PRK14962 DNA polymerase III su 95.4 0.051 1.1E-06 53.7 7.8 22 1-22 42-63 (472)
213 PHA02244 ATPase-like protein 95.4 0.0096 2.1E-07 57.1 2.6 27 1-27 125-151 (383)
214 PRK12723 flagellar biosynthesi 95.4 0.0091 2E-07 57.5 2.5 29 1-29 180-217 (388)
215 COG1224 TIP49 DNA helicase TIP 95.3 0.012 2.6E-07 56.1 2.8 33 1-33 71-105 (450)
216 COG2087 CobU Adenosyl cobinami 95.3 0.011 2.5E-07 50.5 2.4 87 1-102 6-93 (175)
217 TIGR00362 DnaA chromosomal rep 95.3 0.059 1.3E-06 51.7 7.6 143 1-151 142-297 (405)
218 PRK14958 DNA polymerase III su 95.3 0.09 1.9E-06 52.4 9.0 22 1-22 44-65 (509)
219 KOG3220 Similar to bacterial d 95.3 0.0097 2.1E-07 52.5 1.9 32 1-33 7-40 (225)
220 TIGR03015 pepcterm_ATPase puta 95.3 0.051 1.1E-06 48.5 6.7 20 1-20 49-68 (269)
221 PLN00020 ribulose bisphosphate 95.3 0.036 7.8E-07 53.3 5.9 34 1-34 154-187 (413)
222 PRK11889 flhF flagellar biosyn 95.2 0.013 2.7E-07 56.9 2.6 29 1-29 247-280 (436)
223 PRK07933 thymidylate kinase; V 95.2 0.096 2.1E-06 46.1 8.0 21 113-133 133-153 (213)
224 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.026 5.6E-07 49.1 4.4 19 1-19 44-62 (226)
225 PRK07764 DNA polymerase III su 95.1 0.11 2.4E-06 54.7 9.4 22 1-22 43-64 (824)
226 PRK14964 DNA polymerase III su 95.1 0.17 3.8E-06 50.2 10.3 22 1-22 41-62 (491)
227 PTZ00202 tuzin; Provisional 95.1 0.03 6.4E-07 55.1 4.7 74 1-90 292-366 (550)
228 PRK11034 clpA ATP-dependent Cl 95.1 0.013 2.9E-07 60.9 2.6 27 1-27 494-520 (758)
229 PF13521 AAA_28: AAA domain; P 95.0 0.014 3.1E-07 48.5 2.1 23 1-24 5-27 (163)
230 PLN03046 D-glycerate 3-kinase; 95.0 0.044 9.6E-07 53.5 5.7 60 1-71 218-287 (460)
231 TIGR01650 PD_CobS cobaltochela 95.0 0.015 3.4E-07 54.7 2.5 24 1-24 70-93 (327)
232 PRK14949 DNA polymerase III su 94.9 0.16 3.5E-06 53.8 9.9 22 1-22 44-65 (944)
233 COG1341 Predicted GTPase or GT 94.9 0.12 2.5E-06 49.9 8.2 79 1-83 79-171 (398)
234 cd01131 PilT Pilus retraction 94.9 0.015 3.2E-07 50.5 2.0 20 1-20 7-26 (198)
235 cd01120 RecA-like_NTPases RecA 94.9 0.02 4.4E-07 46.1 2.6 19 1-19 5-23 (165)
236 PRK10867 signal recognition pa 94.9 0.039 8.5E-07 53.9 5.0 29 1-29 106-140 (433)
237 TIGR02639 ClpA ATP-dependent C 94.9 0.016 3.5E-07 60.0 2.5 27 1-27 490-516 (731)
238 TIGR01425 SRP54_euk signal rec 94.9 0.018 4E-07 56.1 2.7 30 1-30 106-140 (429)
239 PRK14955 DNA polymerase III su 94.9 0.17 3.6E-06 48.7 9.3 22 1-22 44-65 (397)
240 smart00763 AAA_PrkA PrkA AAA d 94.9 0.014 3.1E-07 55.6 1.9 21 1-21 84-104 (361)
241 PRK03992 proteasome-activating 94.8 0.018 3.9E-07 55.3 2.6 31 1-31 171-201 (389)
242 PF13401 AAA_22: AAA domain; P 94.8 0.014 3E-07 46.1 1.4 20 1-20 10-29 (131)
243 PRK12726 flagellar biosynthesi 94.8 0.02 4.2E-07 55.3 2.6 30 1-30 212-246 (407)
244 COG2256 MGS1 ATPase related to 94.8 0.022 4.7E-07 55.0 2.8 26 1-26 54-79 (436)
245 PRK12269 bifunctional cytidyla 94.8 0.017 3.8E-07 60.8 2.4 32 2-35 41-72 (863)
246 TIGR01242 26Sp45 26S proteasom 94.7 0.022 4.8E-07 53.9 2.9 30 1-30 162-191 (364)
247 TIGR00750 lao LAO/AO transport 94.7 0.084 1.8E-06 48.8 6.7 30 1-30 40-74 (300)
248 TIGR02397 dnaX_nterm DNA polym 94.7 0.19 4.2E-06 46.7 9.2 22 1-22 42-63 (355)
249 COG1428 Deoxynucleoside kinase 94.7 0.023 4.9E-07 50.4 2.6 24 1-24 10-33 (216)
250 PLN02796 D-glycerate 3-kinase 94.7 0.023 4.9E-07 54.0 2.8 30 1-30 106-140 (347)
251 PRK05703 flhF flagellar biosyn 94.7 0.018 3.9E-07 56.1 2.1 29 1-29 227-262 (424)
252 PRK07952 DNA replication prote 94.7 0.037 8.1E-07 50.0 4.0 19 1-19 105-123 (244)
253 PRK14952 DNA polymerase III su 94.6 0.18 3.8E-06 51.2 9.2 22 1-22 41-62 (584)
254 COG0542 clpA ATP-binding subun 94.6 0.021 4.5E-07 59.4 2.5 27 1-27 527-556 (786)
255 TIGR00635 ruvB Holliday juncti 94.6 0.025 5.4E-07 51.8 2.8 23 1-23 36-58 (305)
256 PRK14960 DNA polymerase III su 94.6 0.19 4.1E-06 51.7 9.3 22 1-22 43-64 (702)
257 TIGR00959 ffh signal recogniti 94.6 0.051 1.1E-06 53.1 5.0 29 1-29 105-139 (428)
258 PRK13976 thymidylate kinase; P 94.6 0.045 9.8E-07 48.2 4.3 20 2-21 7-26 (209)
259 PRK10416 signal recognition pa 94.6 0.023 5E-07 53.3 2.5 29 1-29 120-153 (318)
260 PRK10865 protein disaggregatio 94.6 0.063 1.4E-06 56.7 6.0 19 1-19 205-223 (857)
261 PRK07994 DNA polymerase III su 94.6 0.19 4.1E-06 51.6 9.2 22 1-22 44-65 (647)
262 TIGR01241 FtsH_fam ATP-depende 94.5 0.025 5.4E-07 55.9 2.8 30 1-30 94-123 (495)
263 PRK04195 replication factor C 94.5 0.025 5.5E-07 55.7 2.8 28 1-28 45-72 (482)
264 PRK00080 ruvB Holliday junctio 94.5 0.026 5.6E-07 52.7 2.6 24 1-24 57-80 (328)
265 TIGR00064 ftsY signal recognit 94.5 0.024 5.2E-07 51.9 2.3 28 1-28 78-110 (272)
266 PF03029 ATP_bind_1: Conserved 94.4 0.024 5.1E-07 51.0 2.2 30 1-30 2-36 (238)
267 PF00910 RNA_helicase: RNA hel 94.4 0.027 5.8E-07 44.0 2.1 55 1-61 4-61 (107)
268 PRK08727 hypothetical protein; 94.4 0.16 3.4E-06 45.2 7.4 19 1-19 47-65 (233)
269 PF07475 Hpr_kinase_C: HPr Ser 94.4 0.03 6.6E-07 48.0 2.6 33 1-34 24-56 (171)
270 COG1618 Predicted nucleotide k 94.4 0.11 2.3E-06 44.6 5.8 19 1-19 11-29 (179)
271 PRK05896 DNA polymerase III su 94.4 0.18 3.9E-06 51.3 8.5 21 1-21 44-64 (605)
272 PRK06835 DNA replication prote 94.3 0.076 1.6E-06 50.1 5.4 19 1-19 189-207 (329)
273 COG0714 MoxR-like ATPases [Gen 94.3 0.038 8.2E-07 51.6 3.3 24 1-24 49-72 (329)
274 PF08303 tRNA_lig_kinase: tRNA 94.3 0.035 7.6E-07 47.4 2.8 30 1-30 5-35 (168)
275 PRK14954 DNA polymerase III su 94.3 0.22 4.8E-06 50.9 9.0 22 1-22 44-65 (620)
276 PRK08099 bifunctional DNA-bind 94.3 0.031 6.6E-07 54.1 2.7 25 1-25 225-249 (399)
277 COG4619 ABC-type uncharacteriz 94.2 0.033 7.2E-07 48.3 2.5 38 1-43 35-73 (223)
278 PTZ00361 26 proteosome regulat 94.2 0.031 6.7E-07 54.7 2.6 28 1-28 223-250 (438)
279 PRK06921 hypothetical protein; 94.1 0.052 1.1E-06 49.5 3.8 19 1-19 123-141 (266)
280 PF01695 IstB_IS21: IstB-like 94.1 0.024 5.3E-07 48.6 1.5 19 1-19 53-71 (178)
281 KOG3079 Uridylate kinase/adeny 94.1 0.41 8.8E-06 41.8 8.9 30 1-30 14-43 (195)
282 CHL00095 clpC Clp protease ATP 94.0 0.087 1.9E-06 55.4 5.7 31 1-31 206-246 (821)
283 TIGR03167 tRNA_sel_U_synt tRNA 94.0 0.49 1.1E-05 44.3 10.2 33 1-34 133-165 (311)
284 TIGR02639 ClpA ATP-dependent C 94.0 0.077 1.7E-06 55.1 5.3 28 1-28 209-246 (731)
285 PRK13342 recombination factor 94.0 0.035 7.6E-07 53.6 2.6 28 1-28 42-69 (413)
286 KOG0737 AAA+-type ATPase [Post 94.0 0.035 7.6E-07 52.9 2.5 27 1-27 133-159 (386)
287 cd00820 PEPCK_HprK Phosphoenol 94.0 0.031 6.8E-07 44.4 1.8 16 1-16 21-36 (107)
288 PRK12727 flagellar biosynthesi 94.0 0.038 8.3E-07 55.4 2.8 30 1-30 356-392 (559)
289 PRK14721 flhF flagellar biosyn 94.0 0.039 8.5E-07 53.7 2.8 30 1-30 197-233 (420)
290 PRK09169 hypothetical protein; 94.0 0.097 2.1E-06 59.4 6.1 104 1-133 2116-2220(2316)
291 COG0464 SpoVK ATPases of the A 93.9 0.039 8.4E-07 54.3 2.8 29 1-29 282-310 (494)
292 PF13245 AAA_19: Part of AAA d 93.9 0.042 9.1E-07 40.7 2.2 19 1-19 16-34 (76)
293 cd01130 VirB11-like_ATPase Typ 93.9 0.035 7.5E-07 47.5 2.0 20 1-20 31-50 (186)
294 PF04665 Pox_A32: Poxvirus A32 93.9 0.067 1.4E-06 48.4 3.9 51 1-60 19-70 (241)
295 PRK06995 flhF flagellar biosyn 93.8 0.038 8.3E-07 54.7 2.5 28 1-28 262-296 (484)
296 PLN02924 thymidylate kinase 93.8 0.12 2.7E-06 45.8 5.4 117 2-131 23-154 (220)
297 PF02283 CobU: Cobinamide kina 93.8 0.0098 2.1E-07 50.7 -1.6 87 1-103 4-91 (167)
298 PTZ00454 26S protease regulato 93.8 0.045 9.9E-07 52.9 2.8 29 1-29 185-213 (398)
299 PRK14948 DNA polymerase III su 93.8 0.21 4.6E-06 51.0 7.7 22 1-22 44-65 (620)
300 PF07726 AAA_3: ATPase family 93.7 0.034 7.5E-07 45.7 1.6 23 2-24 6-28 (131)
301 PRK00771 signal recognition pa 93.7 0.044 9.5E-07 53.7 2.6 30 1-30 101-135 (437)
302 PRK07003 DNA polymerase III su 93.7 0.28 6.2E-06 51.2 8.5 22 1-22 44-65 (830)
303 cd01983 Fer4_NifH The Fer4_Nif 93.7 0.066 1.4E-06 39.1 3.0 32 2-33 6-40 (99)
304 PRK14969 DNA polymerase III su 93.7 0.49 1.1E-05 47.4 10.0 22 1-22 44-65 (527)
305 TIGR00150 HI0065_YjeE ATPase, 93.6 0.056 1.2E-06 44.5 2.7 30 1-30 28-58 (133)
306 PRK06526 transposase; Provisio 93.6 0.037 7.9E-07 50.3 1.7 19 1-19 104-122 (254)
307 KOG0741 AAA+-type ATPase [Post 93.6 0.042 9.2E-07 54.8 2.3 29 2-30 545-576 (744)
308 PRK00411 cdc6 cell division co 93.6 0.16 3.5E-06 48.1 6.2 19 1-19 61-79 (394)
309 TIGR00679 hpr-ser Hpr(Ser) kin 93.5 0.027 5.7E-07 52.6 0.7 67 1-70 152-221 (304)
310 PRK14951 DNA polymerase III su 93.5 0.42 9E-06 48.9 9.3 22 1-22 44-65 (618)
311 PRK13851 type IV secretion sys 93.5 0.038 8.3E-07 52.4 1.7 21 1-21 168-188 (344)
312 PF12846 AAA_10: AAA-like doma 93.5 0.055 1.2E-06 48.4 2.6 34 1-34 7-43 (304)
313 TIGR03345 VI_ClpV1 type VI sec 93.4 0.16 3.4E-06 53.8 6.4 20 1-20 214-233 (852)
314 PHA02624 large T antigen; Prov 93.4 0.059 1.3E-06 54.7 3.1 26 1-26 437-462 (647)
315 PF03215 Rad17: Rad17 cell cyc 93.4 0.054 1.2E-06 54.2 2.8 24 1-24 51-74 (519)
316 PHA02544 44 clamp loader, smal 93.4 0.057 1.2E-06 49.6 2.7 24 1-24 49-72 (316)
317 PRK12422 chromosomal replicati 93.4 0.43 9.3E-06 46.8 9.0 143 1-152 147-301 (445)
318 TIGR02525 plasmid_TraJ plasmid 93.4 0.12 2.6E-06 49.6 4.9 20 1-20 155-174 (372)
319 PRK12377 putative replication 93.4 0.045 9.8E-07 49.6 2.0 19 1-19 107-125 (248)
320 TIGR01420 pilT_fam pilus retra 93.4 0.17 3.7E-06 47.8 5.9 20 1-20 128-147 (343)
321 cd01394 radB RadB. The archaea 93.4 0.058 1.3E-06 46.9 2.5 19 1-19 25-43 (218)
322 PRK05707 DNA polymerase III su 93.3 0.41 8.9E-06 45.1 8.4 22 1-22 28-49 (328)
323 KOG0734 AAA+-type ATPase conta 93.3 0.14 3.1E-06 51.3 5.4 94 1-95 343-448 (752)
324 KOG0733 Nuclear AAA ATPase (VC 93.3 0.055 1.2E-06 54.8 2.6 34 2-35 230-263 (802)
325 PRK11784 tRNA 2-selenouridine 93.3 0.72 1.6E-05 43.8 10.1 33 1-34 147-179 (345)
326 COG0466 Lon ATP-dependent Lon 93.3 0.051 1.1E-06 55.8 2.3 50 1-60 356-405 (782)
327 PRK08691 DNA polymerase III su 93.3 0.37 7.9E-06 49.9 8.5 22 1-22 44-65 (709)
328 CHL00176 ftsH cell division pr 93.3 0.059 1.3E-06 55.2 2.8 30 1-30 222-251 (638)
329 COG1493 HprK Serine kinase of 93.3 0.066 1.4E-06 49.8 2.8 41 1-42 151-192 (308)
330 TIGR02524 dot_icm_DotB Dot/Icm 93.3 0.045 9.8E-07 52.2 1.8 19 1-19 140-158 (358)
331 COG1117 PstB ABC-type phosphat 93.2 0.076 1.6E-06 47.6 3.1 43 1-43 39-82 (253)
332 cd01123 Rad51_DMC1_radA Rad51_ 93.2 0.12 2.5E-06 45.3 4.3 18 1-18 25-42 (235)
333 PF05673 DUF815: Protein of un 93.2 0.37 8E-06 43.8 7.5 117 1-152 58-184 (249)
334 PLN03025 replication factor C 93.2 0.05 1.1E-06 50.6 2.0 21 1-21 40-60 (319)
335 PRK12402 replication factor C 93.2 0.054 1.2E-06 49.9 2.2 21 1-21 42-62 (337)
336 cd03114 ArgK-like The function 93.2 0.23 5E-06 41.2 5.8 28 1-28 5-37 (148)
337 TIGR01243 CDC48 AAA family ATP 93.1 0.059 1.3E-06 55.8 2.6 30 1-30 493-522 (733)
338 PRK05428 HPr kinase/phosphoryl 93.1 0.039 8.4E-07 51.6 1.1 33 1-34 152-184 (308)
339 cd01124 KaiC KaiC is a circadi 93.0 0.064 1.4E-06 45.0 2.2 18 1-18 5-22 (187)
340 PRK14950 DNA polymerase III su 93.0 0.34 7.4E-06 49.1 7.8 22 1-22 44-65 (585)
341 PRK09183 transposase/IS protei 93.0 0.055 1.2E-06 49.1 1.9 18 1-18 108-125 (259)
342 TIGR01526 nadR_NMN_Atrans nico 93.0 0.067 1.4E-06 50.2 2.5 25 1-25 168-192 (325)
343 TIGR02782 TrbB_P P-type conjug 92.9 0.074 1.6E-06 49.4 2.7 19 1-19 138-156 (299)
344 COG4185 Uncharacterized protei 92.9 0.19 4.1E-06 43.1 4.9 30 1-30 8-39 (187)
345 PF02367 UPF0079: Uncharacteri 92.9 0.069 1.5E-06 43.4 2.2 33 2-34 22-58 (123)
346 PRK14087 dnaA chromosomal repl 92.9 0.37 8E-06 47.3 7.6 144 1-152 147-307 (450)
347 COG2805 PilT Tfp pilus assembl 92.9 0.2 4.2E-06 47.0 5.3 20 1-20 131-150 (353)
348 TIGR00763 lon ATP-dependent pr 92.9 0.066 1.4E-06 55.9 2.5 25 1-25 353-377 (775)
349 TIGR01243 CDC48 AAA family ATP 92.8 0.07 1.5E-06 55.3 2.6 29 1-29 218-246 (733)
350 PF13555 AAA_29: P-loop contai 92.8 0.064 1.4E-06 38.4 1.6 19 1-19 29-47 (62)
351 PRK06647 DNA polymerase III su 92.8 0.62 1.3E-05 47.1 9.2 22 1-22 44-65 (563)
352 cd00046 DEXDc DEAD-like helica 92.8 0.067 1.5E-06 41.1 1.9 20 1-20 6-25 (144)
353 PF00437 T2SE: Type II/IV secr 92.7 0.047 1E-06 49.2 1.1 22 1-22 133-154 (270)
354 PRK14963 DNA polymerase III su 92.7 0.37 8E-06 48.1 7.4 21 1-21 42-62 (504)
355 PRK07940 DNA polymerase III su 92.7 0.47 1E-05 45.8 7.9 22 1-22 42-63 (394)
356 CHL00095 clpC Clp protease ATP 92.6 0.072 1.6E-06 56.0 2.4 28 1-28 545-575 (821)
357 TIGR03346 chaperone_ClpB ATP-d 92.6 0.2 4.4E-06 52.9 5.8 19 1-19 200-218 (852)
358 TIGR02237 recomb_radB DNA repa 92.6 0.07 1.5E-06 46.0 2.0 19 1-19 18-36 (209)
359 PRK09435 membrane ATPase/prote 92.6 0.3 6.5E-06 46.2 6.4 37 1-37 62-103 (332)
360 TIGR00176 mobB molybdopterin-g 92.6 0.07 1.5E-06 44.7 1.9 19 1-19 5-23 (155)
361 PF13086 AAA_11: AAA domain; P 92.6 0.076 1.6E-06 45.4 2.1 19 1-19 23-41 (236)
362 PRK14086 dnaA chromosomal repl 92.5 0.54 1.2E-05 48.0 8.4 19 1-19 320-338 (617)
363 PF10662 PduV-EutP: Ethanolami 92.5 0.069 1.5E-06 44.6 1.6 17 1-17 7-23 (143)
364 PRK09111 DNA polymerase III su 92.4 0.96 2.1E-05 46.1 10.1 22 1-22 52-73 (598)
365 PRK13768 GTPase; Provisional 92.4 0.097 2.1E-06 47.3 2.7 28 1-28 8-40 (253)
366 PRK14957 DNA polymerase III su 92.4 0.92 2E-05 45.7 9.8 21 1-21 44-64 (546)
367 PRK08181 transposase; Validate 92.4 0.067 1.5E-06 49.0 1.6 19 1-19 112-130 (269)
368 COG0125 Tmk Thymidylate kinase 92.3 0.3 6.4E-06 43.2 5.6 123 2-135 10-150 (208)
369 PRK13341 recombination factor 92.3 0.082 1.8E-06 54.9 2.4 28 1-28 58-85 (725)
370 PF05729 NACHT: NACHT domain 92.3 0.081 1.8E-06 42.9 1.9 20 1-20 6-25 (166)
371 PRK14974 cell division protein 92.3 0.096 2.1E-06 49.6 2.6 28 1-28 146-178 (336)
372 PRK14723 flhF flagellar biosyn 92.3 0.08 1.7E-06 55.1 2.2 30 1-30 191-227 (767)
373 PF04851 ResIII: Type III rest 92.3 0.082 1.8E-06 43.6 1.9 20 2-21 32-51 (184)
374 cd00983 recA RecA is a bacter 92.3 0.3 6.4E-06 46.1 5.8 28 1-28 61-91 (325)
375 COG1124 DppF ABC-type dipeptid 92.3 0.074 1.6E-06 48.2 1.7 18 1-18 39-56 (252)
376 PRK15455 PrkA family serine pr 92.2 0.076 1.6E-06 53.8 1.8 20 1-20 109-128 (644)
377 PRK13764 ATPase; Provisional 92.2 0.076 1.6E-06 54.0 1.8 20 1-20 263-282 (602)
378 PRK13900 type IV secretion sys 92.2 0.086 1.9E-06 49.7 2.1 21 1-21 166-186 (332)
379 PTZ00322 6-phosphofructo-2-kin 92.1 0.66 1.4E-05 47.7 8.7 28 1-28 221-248 (664)
380 KOG0989 Replication factor C, 92.1 0.098 2.1E-06 49.0 2.4 22 1-22 63-84 (346)
381 COG0606 Predicted ATPase with 92.1 0.08 1.7E-06 52.1 1.8 88 1-93 204-319 (490)
382 cd00880 Era_like Era (E. coli 91.9 0.093 2E-06 41.1 1.7 18 1-18 2-19 (163)
383 PRK14965 DNA polymerase III su 91.9 1.3 2.7E-05 45.0 10.2 22 1-22 44-65 (576)
384 PRK04296 thymidine kinase; Pro 91.9 0.091 2E-06 45.3 1.8 19 1-19 8-26 (190)
385 KOG0738 AAA+-type ATPase [Post 91.9 0.12 2.7E-06 49.9 2.8 34 1-34 251-287 (491)
386 TIGR01618 phage_P_loop phage n 91.8 0.32 6.9E-06 43.4 5.2 26 1-28 18-43 (220)
387 PRK13833 conjugal transfer pro 91.8 0.097 2.1E-06 49.3 2.0 19 1-19 150-168 (323)
388 COG1222 RPT1 ATP-dependent 26S 91.8 0.13 2.7E-06 49.2 2.8 26 1-26 191-216 (406)
389 KOG0744 AAA+-type ATPase [Post 91.8 0.1 2.2E-06 49.4 2.0 20 2-21 184-203 (423)
390 cd03283 ABC_MutS-like MutS-lik 91.8 0.47 1E-05 41.3 6.2 17 1-17 31-47 (199)
391 TIGR02928 orc1/cdc6 family rep 91.8 0.24 5.3E-06 46.3 4.7 19 1-19 46-64 (365)
392 cd04163 Era Era subfamily. Er 91.7 0.097 2.1E-06 41.8 1.7 18 1-18 9-26 (168)
393 PRK10865 protein disaggregatio 91.7 0.11 2.4E-06 54.9 2.6 20 1-20 604-623 (857)
394 TIGR02788 VirB11 P-type DNA tr 91.7 0.09 2E-06 48.8 1.7 20 1-20 150-169 (308)
395 TIGR03345 VI_ClpV1 type VI sec 91.7 0.11 2.4E-06 54.9 2.5 27 1-27 602-631 (852)
396 PF13191 AAA_16: AAA ATPase do 91.7 0.11 2.4E-06 43.1 2.0 21 1-21 30-50 (185)
397 PRK08116 hypothetical protein; 91.7 0.1 2.2E-06 47.6 2.0 19 1-19 120-138 (268)
398 TIGR02012 tigrfam_recA protein 91.6 0.33 7.3E-06 45.7 5.4 28 1-28 61-91 (321)
399 CHL00206 ycf2 Ycf2; Provisiona 91.6 0.11 2.4E-06 58.7 2.5 32 1-32 1636-1667(2281)
400 TIGR00678 holB DNA polymerase 91.6 1.2 2.7E-05 37.7 8.5 22 1-22 20-41 (188)
401 PRK06305 DNA polymerase III su 91.6 1.4 3E-05 43.4 9.9 22 1-22 45-66 (451)
402 PRK13894 conjugal transfer ATP 91.5 0.1 2.3E-06 48.9 1.9 19 1-19 154-172 (319)
403 TIGR02236 recomb_radA DNA repa 91.5 0.14 2.9E-06 47.4 2.6 19 1-19 101-119 (310)
404 PF01935 DUF87: Domain of unkn 91.5 0.13 2.8E-06 45.1 2.4 36 1-36 29-68 (229)
405 PRK10733 hflB ATP-dependent me 91.5 0.12 2.7E-06 52.8 2.6 30 1-30 191-220 (644)
406 KOG1942 DNA helicase, TBP-inte 91.4 0.12 2.7E-06 48.4 2.2 21 1-21 70-90 (456)
407 COG1136 SalX ABC-type antimicr 91.4 0.11 2.3E-06 46.6 1.8 65 1-72 37-106 (226)
408 KOG0731 AAA+-type ATPase conta 91.4 0.12 2.6E-06 53.6 2.3 59 1-60 350-414 (774)
409 COG2255 RuvB Holliday junction 91.3 0.14 3E-06 47.6 2.4 23 1-23 58-80 (332)
410 KOG2170 ATPase of the AAA+ sup 91.3 0.3 6.5E-06 45.8 4.6 67 2-90 117-183 (344)
411 COG1484 DnaC DNA replication p 91.3 0.12 2.5E-06 47.0 1.9 19 1-19 111-129 (254)
412 PF12774 AAA_6: Hydrolytic ATP 91.3 0.16 3.4E-06 45.6 2.7 29 1-29 38-68 (231)
413 PRK11331 5-methylcytosine-spec 91.3 0.13 2.7E-06 50.7 2.2 22 1-22 200-221 (459)
414 PRK13407 bchI magnesium chelat 91.3 0.14 2.9E-06 48.5 2.4 20 1-20 35-54 (334)
415 PRK09361 radB DNA repair and r 91.1 0.16 3.4E-06 44.4 2.5 19 1-19 29-47 (225)
416 PF01580 FtsK_SpoIIIE: FtsK/Sp 91.1 0.34 7.4E-06 41.7 4.6 19 1-19 44-62 (205)
417 COG1122 CbiO ABC-type cobalt t 91.1 0.11 2.4E-06 46.8 1.5 19 1-19 36-54 (235)
418 PRK10751 molybdopterin-guanine 91.0 0.13 2.8E-06 44.2 1.8 20 1-20 12-31 (173)
419 KOG3062 RNA polymerase II elon 91.0 0.65 1.4E-05 42.0 6.2 128 1-149 7-137 (281)
420 PRK05563 DNA polymerase III su 91.0 0.76 1.7E-05 46.4 7.5 22 1-22 44-65 (559)
421 TIGR03346 chaperone_ClpB ATP-d 90.9 0.15 3.3E-06 53.9 2.6 27 1-27 601-630 (852)
422 COG0470 HolB ATPase involved i 90.9 0.15 3.2E-06 46.5 2.2 22 1-22 30-51 (325)
423 cd01129 PulE-GspE PulE/GspE Th 90.9 0.14 3E-06 46.7 2.0 20 1-20 86-105 (264)
424 PF00005 ABC_tran: ABC transpo 90.8 0.097 2.1E-06 41.7 0.8 19 1-19 17-35 (137)
425 cd03255 ABC_MJ0796_Lo1CDE_FtsE 90.8 0.13 2.8E-06 44.6 1.7 19 1-19 36-54 (218)
426 PRK14953 DNA polymerase III su 90.8 1.6 3.5E-05 43.4 9.5 21 1-21 44-64 (486)
427 TIGR03689 pup_AAA proteasome A 90.8 0.15 3.1E-06 51.0 2.2 22 1-22 222-243 (512)
428 PRK08939 primosomal protein Dn 90.7 0.14 3.1E-06 47.7 2.0 19 1-19 162-180 (306)
429 PF08477 Miro: Miro-like prote 90.7 0.16 3.4E-06 39.3 1.9 20 1-20 5-24 (119)
430 COG1703 ArgK Putative periplas 90.7 1 2.2E-05 42.1 7.5 88 1-90 57-149 (323)
431 PRK07133 DNA polymerase III su 90.6 1.2 2.7E-05 46.3 8.7 22 1-22 46-67 (725)
432 PLN03232 ABC transporter C fam 90.5 0.31 6.8E-06 54.5 4.7 20 1-20 1268-1287(1495)
433 cd03292 ABC_FtsE_transporter F 90.5 0.15 3.1E-06 44.1 1.7 19 1-19 33-51 (214)
434 TIGR03743 SXT_TraD conjugative 90.5 0.24 5.3E-06 50.7 3.5 73 1-76 182-261 (634)
435 cd03225 ABC_cobalt_CbiO_domain 90.5 0.15 3.2E-06 44.0 1.7 19 1-19 33-51 (211)
436 cd01853 Toc34_like Toc34-like 90.4 0.62 1.3E-05 42.1 5.8 18 1-18 37-54 (249)
437 COG1126 GlnQ ABC-type polar am 90.4 0.15 3.3E-06 45.6 1.8 17 1-17 34-50 (240)
438 cd03258 ABC_MetN_methionine_tr 90.4 0.14 3.1E-06 44.9 1.7 19 1-19 37-55 (233)
439 PF13481 AAA_25: AAA domain; P 90.4 0.14 3.1E-06 43.3 1.5 19 1-19 38-56 (193)
440 PF13476 AAA_23: AAA domain; P 90.4 0.12 2.6E-06 43.3 1.0 23 1-23 25-47 (202)
441 PRK11034 clpA ATP-dependent Cl 90.3 0.58 1.3E-05 49.0 6.2 19 1-19 213-231 (758)
442 KOG3078 Adenylate kinase [Nucl 90.3 0.45 9.7E-06 42.9 4.7 28 1-28 21-48 (235)
443 COG1120 FepC ABC-type cobalami 90.3 0.15 3.2E-06 46.6 1.7 20 1-20 34-53 (258)
444 cd03261 ABC_Org_Solvent_Resist 90.3 0.15 3.4E-06 44.8 1.7 19 1-19 32-50 (235)
445 PRK09354 recA recombinase A; P 90.3 0.59 1.3E-05 44.5 5.7 28 1-28 66-96 (349)
446 KOG0743 AAA+-type ATPase [Post 90.2 0.19 4.2E-06 49.1 2.5 24 1-24 241-264 (457)
447 PRK10536 hypothetical protein; 90.2 0.18 3.8E-06 46.2 2.0 18 1-18 80-97 (262)
448 KOG2004 Mitochondrial ATP-depe 90.2 0.17 3.7E-06 52.2 2.1 24 1-24 444-467 (906)
449 TIGR00960 3a0501s02 Type II (G 90.2 0.15 3.3E-06 44.2 1.6 19 1-19 35-53 (216)
450 TIGR02673 FtsE cell division A 90.2 0.16 3.4E-06 44.0 1.6 19 1-19 34-52 (214)
451 cd03256 ABC_PhnC_transporter A 90.2 0.16 3.4E-06 44.8 1.6 19 1-19 33-51 (241)
452 TIGR01166 cbiO cobalt transpor 90.2 0.16 3.5E-06 43.2 1.7 19 1-19 24-42 (190)
453 cd03269 ABC_putative_ATPase Th 90.1 0.17 3.6E-06 43.7 1.8 19 1-19 32-50 (210)
454 PRK05564 DNA polymerase III su 90.1 1.9 4.1E-05 39.9 8.9 22 1-22 32-53 (313)
455 TIGR03754 conj_TOL_TraD conjug 90.1 0.26 5.5E-06 50.5 3.3 79 1-82 186-271 (643)
456 TIGR02315 ABC_phnC phosphonate 90.1 0.17 3.6E-06 44.7 1.7 19 1-19 34-52 (243)
457 cd03226 ABC_cobalt_CbiO_domain 90.0 0.16 3.5E-06 43.7 1.6 19 1-19 32-50 (205)
458 PF01591 6PF2K: 6-phosphofruct 90.0 0.38 8.2E-06 43.0 3.9 28 1-28 18-50 (222)
459 TIGR03878 thermo_KaiC_2 KaiC d 89.9 0.19 4.1E-06 45.5 2.0 18 1-18 42-59 (259)
460 cd03293 ABC_NrtD_SsuB_transpor 89.9 0.17 3.7E-06 44.0 1.6 19 1-19 36-54 (220)
461 COG3839 MalK ABC-type sugar tr 89.8 0.17 3.8E-06 47.9 1.7 38 1-43 35-72 (338)
462 cd03264 ABC_drug_resistance_li 89.8 0.17 3.8E-06 43.7 1.7 19 1-19 31-49 (211)
463 cd03259 ABC_Carb_Solutes_like 89.8 0.18 3.9E-06 43.6 1.7 19 1-19 32-50 (213)
464 COG1116 TauB ABC-type nitrate/ 89.8 0.18 3.9E-06 45.7 1.7 18 1-18 35-52 (248)
465 cd03224 ABC_TM1139_LivF_branch 89.8 0.18 3.8E-06 43.9 1.6 19 1-19 32-50 (222)
466 cd03278 ABC_SMC_barmotin Barmo 89.8 0.18 4E-06 43.7 1.7 19 1-19 28-46 (197)
467 cd03301 ABC_MalK_N The N-termi 89.7 0.18 4E-06 43.5 1.7 19 1-19 32-50 (213)
468 cd03235 ABC_Metallic_Cations A 89.7 0.17 3.7E-06 43.8 1.5 19 1-19 31-49 (213)
469 COG2804 PulE Type II secretory 89.6 0.2 4.4E-06 49.6 2.1 22 1-22 264-285 (500)
470 cd03260 ABC_PstB_phosphate_tra 89.6 0.19 4.1E-06 44.0 1.7 19 1-19 32-50 (227)
471 PRK11629 lolD lipoprotein tran 89.6 0.19 4.2E-06 44.2 1.8 19 1-19 41-59 (233)
472 cd00984 DnaB_C DnaB helicase C 89.6 0.2 4.3E-06 44.1 1.8 19 1-19 19-37 (242)
473 cd03296 ABC_CysA_sulfate_impor 89.5 0.19 4.2E-06 44.4 1.7 19 1-19 34-52 (239)
474 cd03229 ABC_Class3 This class 89.4 0.2 4.3E-06 42.3 1.7 19 1-19 32-50 (178)
475 TIGR03608 L_ocin_972_ABC putat 89.4 0.2 4.4E-06 42.9 1.8 19 1-19 30-48 (206)
476 PF03205 MobB: Molybdopterin g 89.4 0.19 4.2E-06 41.4 1.5 19 1-19 6-24 (140)
477 cd03246 ABCC_Protease_Secretio 89.4 0.2 4.4E-06 42.1 1.7 19 1-19 34-52 (173)
478 cd01393 recA_like RecA is a b 89.4 0.22 4.9E-06 43.3 2.0 19 1-19 25-43 (226)
479 cd03265 ABC_DrrA DrrA is the A 89.4 0.2 4.3E-06 43.7 1.7 19 1-19 32-50 (220)
480 cd03263 ABC_subfamily_A The AB 89.4 0.2 4.4E-06 43.5 1.7 19 1-19 34-52 (220)
481 PRK14971 DNA polymerase III su 89.4 1.8 4E-05 44.2 8.8 22 1-22 45-66 (614)
482 COG1132 MdlB ABC-type multidru 89.4 0.25 5.4E-06 49.4 2.6 20 1-20 361-380 (567)
483 TIGR03864 PQQ_ABC_ATP ABC tran 89.4 0.2 4.3E-06 44.2 1.7 19 1-19 33-51 (236)
484 cd03219 ABC_Mj1267_LivG_branch 89.3 0.19 4.1E-06 44.2 1.5 19 1-19 32-50 (236)
485 cd03262 ABC_HisP_GlnQ_permease 89.3 0.21 4.5E-06 43.1 1.7 19 1-19 32-50 (213)
486 PRK08533 flagellar accessory p 89.3 0.22 4.7E-06 44.4 1.9 19 1-19 30-48 (230)
487 cd00882 Ras_like_GTPase Ras-li 89.3 0.24 5.1E-06 38.1 1.9 20 1-20 2-21 (157)
488 TIGR02211 LolD_lipo_ex lipopro 89.3 0.21 4.6E-06 43.4 1.7 19 1-19 37-55 (221)
489 PRK13541 cytochrome c biogenes 89.2 0.22 4.7E-06 42.7 1.8 19 1-19 32-50 (195)
490 COG0378 HypB Ni2+-binding GTPa 89.2 0.33 7.1E-06 42.7 2.8 19 1-19 19-37 (202)
491 cd03273 ABC_SMC2_euk Eukaryoti 89.2 0.24 5.3E-06 44.2 2.1 21 1-21 31-51 (251)
492 TIGR00073 hypB hydrogenase acc 89.2 0.32 7E-06 42.2 2.8 20 1-20 28-47 (207)
493 PRK10584 putative ABC transpor 89.2 0.22 4.7E-06 43.6 1.8 19 1-19 42-60 (228)
494 cd03116 MobB Molybdenum is an 89.2 0.24 5.2E-06 41.8 2.0 20 1-20 7-26 (159)
495 cd03247 ABCC_cytochrome_bd The 89.1 0.21 4.6E-06 42.1 1.6 19 1-19 34-52 (178)
496 PRK14247 phosphate ABC transpo 89.1 0.21 4.5E-06 44.4 1.6 19 1-19 35-53 (250)
497 cd02034 CooC The accessory pro 89.1 0.31 6.8E-06 38.8 2.5 28 1-28 5-37 (116)
498 cd03218 ABC_YhbG The ABC trans 89.1 0.22 4.8E-06 43.6 1.7 19 1-19 32-50 (232)
499 cd03230 ABC_DR_subfamily_A Thi 89.0 0.22 4.8E-06 41.9 1.6 19 1-19 32-50 (173)
500 PRK11124 artP arginine transpo 89.0 0.23 4.9E-06 43.9 1.8 19 1-19 34-52 (242)
No 1
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=3.9e-76 Score=568.69 Aligned_cols=262 Identities=45% Similarity=0.820 Sum_probs=230.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||+||+.||+.++++|||+|||||||||||||||||.+|+.+|||||+|+++|+++||+++|+++|.++|++|
T Consensus 28 ~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A~~~I~~I 107 (468)
T PLN02748 28 MGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHAVPLIEEI 107 (468)
T ss_pred ECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcchh-------------------------h-----------------------------
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSI-------------------------I----------------------------- 106 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~-------------------------~----------------------------- 106 (269)
+++|++||||||||||++||++|.. .
T Consensus 108 ~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r~~l~~~~~~~~~g~~~l~~~L~~vDP~~A~rihpn 187 (468)
T PLN02748 108 LSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGLGNDDEDHGYELLKELDPVAANRIHPN 187 (468)
T ss_pred HhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCCc
Confidence 9999999999999999999997531 0
Q ss_pred --------------------hh-c------------cccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCC
Q 044048 107 --------------------NF-R------------ANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDPN 153 (269)
Q Consensus 107 --------------------~~-~------------~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~~ 153 (269)
.+ . .+|++++|||++|+++|++||++||+.|+++||++||+.|++.+
T Consensus 188 D~rRI~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~RI~~Rvd~Mle~GlleEv~~l~~~~ 267 (468)
T PLN02748 188 NHRKINRYLELYATTGVLPSKLYQGKAAENWGRISNSRFDCCFICVDADTAVLDRYVNQRVDCMIDAGLLDEVYDIYDPG 267 (468)
T ss_pred cHHHHHHHHHHHHHHCcCHHHHhhhccccccccccCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcC
Confidence 00 0 14778999999999999999999999999999999999999876
Q ss_pred CCcccccccccCHHHHHHHHh--------cccCc-------cc--------cccccchHHHHHHHHHHHHHHHHHHHHHH
Q 044048 154 ADYNRGIRRSIGAPELHEYLK--------LESNV-------KN--------ETTNNNKDLLLKKAIQEIKDNTCKLVDKQ 210 (269)
Q Consensus 154 ~~~~~~~~qaIGykE~~~yl~--------~~~~~-------d~--------~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ 210 (269)
.+++.|++|+||||||.+||+ |+.+. ++ ...+.....++++|++.||.+||||||||
T Consensus 268 ~~~~~~~~qaIGykE~~~yL~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eaie~ik~~Tr~yAKRQ 347 (468)
T PLN02748 268 ADYTRGLRQAIGVREFEDFLRLYLSRNENGELTSSSNNDKVMKENSRKILNFPHDDKLKILLDEAIDQVKLNTRRLVRRQ 347 (468)
T ss_pred CCCCcccceeEcHHHHHHHHHhcccccccccccccccccchhhhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999998 33200 00 00112333579999999999999999999
Q ss_pred HHHHhchhcccCCeeEEeccchhhhhhcccccchHHHHHHHhhhHHHHHHHHHhcccc
Q 044048 211 VQKIKRLRNELGWKIHRIDATYVLEGRMKDAEDAEDAWEEVVLKPGVAIVEDFLNKIK 268 (269)
Q Consensus 211 ~tW~r~~~~~~~~~i~~~d~t~~~~~~~~~~~~~~~~W~~~V~~pa~~i~~~fl~~~~ 268 (269)
+|||+++....+|+++++|+|+++... .++.|++.|.+||++||++||.++.
T Consensus 348 ~tw~~rl~~~~~~~i~~lD~t~~~~~~------~~~~W~~~V~~pa~~iv~~fL~~~~ 399 (468)
T PLN02748 348 KRRLHRLNTVFGWNIHYIDATEAILCK------SEESWNAKVVKPAVEIVRRFLSDDT 399 (468)
T ss_pred HHHHhhhhhcccCCeeEeechhhhhhc------cHhHHHHHhHHHHHHHHHHHHcCCC
Confidence 999999766557899999999987322 3589999999999999999999853
No 2
>PLN02165 adenylate isopentenyltransferase
Probab=100.00 E-value=2.1e-73 Score=528.42 Aligned_cols=265 Identities=43% Similarity=0.800 Sum_probs=231.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCC-CCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEA-DYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~-~~~~~~f~~~a~~~i~~ 79 (269)
+||||||||+||..||+.++++|||+||||||+|+||+|+||+.+|+.++||||+|+++|.+ .|++.+|+++|..+|++
T Consensus 49 iGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~~a~~~I~~ 128 (334)
T PLN02165 49 MGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRSLASLSISE 128 (334)
T ss_pred ECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999997 89999999999999999
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchh-------------hhhccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHH
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSI-------------INFRANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEV 146 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~-------------~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev 146 (269)
++++|++||+|||||+|++||++|.. .....+|+++++||++|+++|++||++||++|+++||++||
T Consensus 129 i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd~Ml~~GlldEv 208 (334)
T PLN02165 129 ITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVDEMMDSGMFEEL 208 (334)
T ss_pred HHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 99999999999999999999999741 00113588899999999999999999999999999999999
Q ss_pred HhhcCCCCCc--ccccccccCHHHHHHHHhcccCcc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccC
Q 044048 147 RDMFDPNADY--NRGIRRSIGAPELHEYLKLESNVK--NETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRLRNELG 222 (269)
Q Consensus 147 ~~l~~~~~~~--~~~~~qaIGykE~~~yl~~~~~~d--~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~~~~~~ 222 (269)
+.|++.+.+. +.+++|+||||||.+||++..+.+ .+ .+..++..+++|++.++.+||||||||+||||++.+. .
T Consensus 209 ~~L~~~~~~~~~~~~~~qaIGYkE~~~yL~~~~~~~~~g~-~~~~~~~~l~e~ie~ik~~TrqYAKRQ~TWfR~~~~~-~ 286 (334)
T PLN02165 209 AEFYDPVKSGSEPLGIRKAIGVPEFDRYFKKYPPENKMGK-WDQARKAAYEEAVREIKENTCQLAKRQIEKIMKLKSA-G 286 (334)
T ss_pred HHHHHccCCcccCCCceeEEcHHHHHHHHHhccccccCCc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccc-C
Confidence 9999875544 458999999999999998322111 00 0012345699999999999999999999999998654 7
Q ss_pred CeeEEeccchhhhhhcc---cccchHHHHHHHhhhHHHHHHHHHhccc
Q 044048 223 WKIHRIDATYVLEGRMK---DAEDAEDAWEEVVLKPGVAIVEDFLNKI 267 (269)
Q Consensus 223 ~~i~~~d~t~~~~~~~~---~~~~~~~~W~~~V~~pa~~i~~~fl~~~ 267 (269)
|+++++|+|+++...|. ......+.|++.|.+||++|+++||+++
T Consensus 287 ~~~~~lD~t~~~~~~~~~~~~~~~~~~~w~~~v~~~~~~i~~~fl~~~ 334 (334)
T PLN02165 287 WDIKRVDATASFRAVMRKKGKKKKWREIWEKDVLEPSVKIVKRFLVED 334 (334)
T ss_pred CcEEEEechhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999865554 3345578999999999999999999985
No 3
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=7.5e-73 Score=520.10 Aligned_cols=212 Identities=26% Similarity=0.389 Sum_probs=194.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||+||++||++ ++||||||||||||+|||||||||++|+.+|||||+|+++|+++||+++|+++|.++|++|
T Consensus 10 ~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a~~~i~~i 88 (300)
T PRK14729 10 FGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEALKIIKEL 88 (300)
T ss_pred ECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHHHHHHHHH
Confidence 599999999999999999 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhh------------------------------------------------------
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSII------------------------------------------------------ 106 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~------------------------------------------------------ 106 (269)
+++|++||||||||||++||++|...
T Consensus 89 ~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~~i~pnd~~Ri~RALEv~ 168 (300)
T PRK14729 89 RQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYRIKRSLEVY 168 (300)
T ss_pred HHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhCCcCCHHHHHHHHHHH
Confidence 99999999999999999999988420
Q ss_pred --------hhc----cccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCCCCcccccccccCHHHHHHHH-
Q 044048 107 --------NFR----ANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDPNADYNRGIRRSIGAPELHEYL- 173 (269)
Q Consensus 107 --------~~~----~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~~~~~~~~~~qaIGykE~~~yl- 173 (269)
.|. ..|++++++|++|+++|++||++||++|+++||++||+.|++.+.+.+.+++|+|||||+++||
T Consensus 169 ~~tG~~~s~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~Rv~~Ml~~GlieEv~~l~~~~~~~~~~~~~aIGYkE~~~yl~ 248 (300)
T PRK14729 169 YQTGIPISQFLKKQNMFKNILAIGLKRPMEEMKSRIISRVNNMIDCGLLSEIKSLLGKGYNENTPAFKGIGYREFLLWKS 248 (300)
T ss_pred HHhCCChHhhhhccCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcCCCCCCCcceeEcHHHHHHHHh
Confidence 010 1357788999999999999999999999999999999999987767788999999999999999
Q ss_pred hcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCeeEEeccc
Q 044048 174 KLESNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRLRNELGWKIHRIDAT 231 (269)
Q Consensus 174 ~~~~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~~~~~~~~i~~~d~t 231 (269)
.|+.+ +++|++.++++||||||||+||||++. +++|+|.+
T Consensus 249 ~g~~~-------------l~e~~e~i~~~Tr~yAKRQ~TWfr~~~-----~~~w~~~~ 288 (300)
T PRK14729 249 RPCYM-------------LNDIINLIVKNSFLYVKRQMTFFAKIP-----NVLWFHPD 288 (300)
T ss_pred cCCCC-------------HHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCeeecCC
Confidence 66654 789999999999999999999999864 36788764
No 4
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-71 Score=507.42 Aligned_cols=213 Identities=38% Similarity=0.629 Sum_probs=197.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||.||++||+++|+||||+|||||||||||||||||.+|+.+|||||+|+++|.++||+++|.++|..+|++|
T Consensus 9 ~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a~~~i~~i 88 (308)
T COG0324 9 AGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDALAAIDDI 88 (308)
T ss_pred ECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhh------------------------------------------------------
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSII------------------------------------------------------ 106 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~------------------------------------------------------ 106 (269)
.++||+||+|||||+|++||++|.+.
T Consensus 89 ~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~Ri~RALEv~ 168 (308)
T COG0324 89 LARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKIDPEAAAKIHPNDPQRIIRALEVY 168 (308)
T ss_pred HhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHHhcCCCchhHHHHHHHHH
Confidence 99999999999999999999998420
Q ss_pred --------hh-------ccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCCCCcccccccccCHHHHHH
Q 044048 107 --------NF-------RANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDPNADYNRGIRRSIGAPELHE 171 (269)
Q Consensus 107 --------~~-------~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~~~~~~~~~~qaIGykE~~~ 171 (269)
++ ..+|++.+++|.++++.|++||+.|+++|+++||++||+.|+..+.+.+.+++|+|||||+.+
T Consensus 169 ~~tGk~~s~~~~~~~~~~~~~~~~~~~l~~~r~~L~~rI~~R~d~Ml~~Gli~EV~~L~~~g~~~~~~~~~~iGy~e~~~ 248 (308)
T COG0324 169 YLTGKPISELQKRSRPILEPYDILIIALAADREVLYERINRRVDAMLEQGLIEEVKALYARGLHLDLPAMQAIGYKEILA 248 (308)
T ss_pred HHHCCCHHHHhhcccCCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCccchHHHhcCHHHHHH
Confidence 00 015788999999999999999999999999999999999999988788899999999999999
Q ss_pred HHhcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCeeEEeccc
Q 044048 172 YLKLESNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRLRNELGWKIHRIDAT 231 (269)
Q Consensus 172 yl~~~~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~~~~~~~~i~~~d~t 231 (269)
||+|+.+ +++|++.++.+||||||||+|||||... ++|+|..
T Consensus 249 yl~g~~~-------------~~ea~~~~~~~TRqyAKRQ~TWfr~~~~-----~~w~~~~ 290 (308)
T COG0324 249 YLDGGIS-------------LEEAIERIKTATRQYAKRQLTWFRNQLG-----VHWLDSE 290 (308)
T ss_pred HHhCCCC-------------HHHHHHHHHHHHHHHHHHHHHHhccCcc-----cceeccC
Confidence 9998865 7899999999999999999999998643 5666654
No 5
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-69 Score=491.66 Aligned_cols=265 Identities=47% Similarity=0.836 Sum_probs=234.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||.||++||.+|++||||+|+||||+|+||+|||+|.+|+.||||||+++++|+.+||+++|.++|.++|++|
T Consensus 13 ~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a~~aie~I 92 (348)
T KOG1384|consen 13 MGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDASRAIEEI 92 (348)
T ss_pred ecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcchh----hhhc---------cccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSI----INFR---------ANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVR 147 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~----~~~~---------~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~ 147 (269)
++||++||+||||++|++||+.+.. .++. .+|+||++|++++.++|++|+.+|||.|+++||+||++
T Consensus 93 ~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~Ml~~Gl~eE~~ 172 (348)
T KOG1384|consen 93 HSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVDDMLESGLLEELR 172 (348)
T ss_pred HhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHHHHHHcchHHHHH
Confidence 9999999999999999999998721 1111 26999999999999999999999999999999999999
Q ss_pred hhcCC-CCCcccccccccCHHHHHHHHhcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCeeE
Q 044048 148 DMFDP-NADYNRGIRRSIGAPELHEYLKLESNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRLRNELGWKIH 226 (269)
Q Consensus 148 ~l~~~-~~~~~~~~~qaIGykE~~~yl~~~~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~~~~~~~~i~ 226 (269)
+|+.+ ..++..++.++||++||+.|++-...... .++..+.+++++|++.||.+|+||||||.+||.++.....|.|+
T Consensus 173 ~f~~~~~s~~~~~i~~~iGv~e~d~f~~~~~~~~~-k~d~~~~~~l~~aie~iK~nT~~lakrQ~~~I~~l~~~~~~~i~ 251 (348)
T KOG1384|consen 173 DFYDPYNSSYRSGIRKAIGVPEFDGFKEFYPWLTD-KWDLARKELLEKAIEAIKENTRRLAKRQKRKIEKLFLPRKWDIH 251 (348)
T ss_pred HHhhhhhcCccccchhccCcHHHhhhhhccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 99987 45566778899999999999876542111 23446667899999999999999999999999998665459999
Q ss_pred Eeccchhhhhhccccc----chHHHHHHHhhhHHHHHHHHHhcc
Q 044048 227 RIDATYVLEGRMKDAE----DAEDAWEEVVLKPGVAIVEDFLNK 266 (269)
Q Consensus 227 ~~d~t~~~~~~~~~~~----~~~~~W~~~V~~pa~~i~~~fl~~ 266 (269)
.+|+|+++...++.++ +....|+..|..|+..|++.||..
T Consensus 252 ~vdaT~~~~~~~~~~s~~~~~~~~~w~~~v~~ps~~iv~~~l~~ 295 (348)
T KOG1384|consen 252 RVDATEVFLFAKNRSSWFRIEQREIWNNPVKPPSAKIVKRFLDY 295 (348)
T ss_pred ccchHHHHHHhhhhhHHhhhccchhhccccccchHHHHHHHHHh
Confidence 9999999976443232 557799999999999999999864
No 6
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=1e-68 Score=490.26 Aligned_cols=214 Identities=34% Similarity=0.549 Sum_probs=198.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||+||..||+.++++|||+|||||||+||||||||+++|+.+|||||+|+++|.++||+++|..+|.++|+++
T Consensus 5 ~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~i~~~ 84 (287)
T TIGR00174 5 MGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNAIADI 84 (287)
T ss_pred ECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhh------------------------------------------------------
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSII------------------------------------------------------ 106 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~------------------------------------------------------ 106 (269)
+++|++||+|||||||++||++|...
T Consensus 85 ~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~RALEi~ 164 (287)
T TIGR00174 85 TARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAEEQGWDFLYNELKKVDPVAAAKIHPNDTRRVQRALEVF 164 (287)
T ss_pred HhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999999999999998420
Q ss_pred --------hhc------cccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCCCCcccccccccCHHHHHHH
Q 044048 107 --------NFR------ANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDPNADYNRGIRRSIGAPELHEY 172 (269)
Q Consensus 107 --------~~~------~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~~~~~~~~~~qaIGykE~~~y 172 (269)
.+. .+|+++++||++|++.|++||++||+.|+++||++||+.|++.+.+.+.+++|+||||||++|
T Consensus 165 ~~tG~~~s~~~~~~~~~~~~~~~~i~l~~dr~~L~~rI~~Rv~~Mi~~Gl~eEv~~l~~~~~~~~~~~~~aIGYkE~~~~ 244 (287)
T TIGR00174 165 YATGKPPSELFKEQKIELFYDAVQIGLASSREPLHQRIEQRVHDMLESGLLAEVKALYAQYDLCDLPSIQAIGYKEFLLY 244 (287)
T ss_pred HHHCCChHHHhhccCCCCCCCeEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCCcCCchhhhccHHHHHHH
Confidence 000 147888999999999999999999999999999999999998766667889999999999999
Q ss_pred HhcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCeeEEeccch
Q 044048 173 LKLESNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRLRNELGWKIHRIDATY 232 (269)
Q Consensus 173 l~~~~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~~~~~~~~i~~~d~t~ 232 (269)
|+|+.+ +++|++.++++||||||||+||||+.. +++|+|+++
T Consensus 245 l~g~~~-------------~~e~ie~i~~~Tr~yAKRQ~TWfR~~~-----~~~~~~~~~ 286 (287)
T TIGR00174 245 LEGTVS-------------LEDAIERIKCNTRQYAKRQLTWFRKWS-----DVLWLDSTD 286 (287)
T ss_pred HcCCCC-------------HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCEEeCCCC
Confidence 999876 789999999999999999999999864 378888754
No 7
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=100.00 E-value=2.1e-65 Score=473.06 Aligned_cols=211 Identities=42% Similarity=0.669 Sum_probs=195.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||+||..||+.++++|||+||||||++||||||||+++|+.+|||||+|+++|.+.||+++|+++|.+.|+++
T Consensus 10 ~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~~~i~~i 89 (307)
T PRK00091 10 VGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDALAAIADI 89 (307)
T ss_pred ECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcchh-------------------------------------------------------
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSI------------------------------------------------------- 105 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~------------------------------------------------------- 105 (269)
+++|++||+|||||+|+++|+.|..
T Consensus 90 ~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~~d~~Ri~RAlEi~ 169 (307)
T PRK00091 90 LARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAAEEGWEALHAELAEIDPEAAARIHPNDPQRIIRALEVY 169 (307)
T ss_pred HhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhcCCCCCchhHHHHHHH
Confidence 9999999999999999999988631
Q ss_pred -------hhhc-----cccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCCCCcccccccccCHHHHHHHH
Q 044048 106 -------INFR-----ANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDPNADYNRGIRRSIGAPELHEYL 173 (269)
Q Consensus 106 -------~~~~-----~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~~~~~~~~~~qaIGykE~~~yl 173 (269)
+.+. .+|+++++||++|+++|++||++||++|+++||++||+.|++.+.+.+.+++|+|||||+++||
T Consensus 170 ~~tG~~~s~~~~~~~~~~~~~~~~~l~~dr~~L~~rI~~Rv~~Ml~~Gl~eEv~~l~~~~~~~~~~~~~aIGykE~~~yl 249 (307)
T PRK00091 170 ELTGKPLSELQKRGKPPPYRVLIIGLDPDREELYERINQRVDQMLEQGLLEEVRALLARGYLPDLPAMRAIGYKELLAYL 249 (307)
T ss_pred HHHCCChhhhhhccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHcCCCCCCccceeecHHHHHHHH
Confidence 0010 2378899999999999999999999999999999999999987666778999999999999999
Q ss_pred hcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCeeEEec
Q 044048 174 KLESNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRLRNELGWKIHRID 229 (269)
Q Consensus 174 ~~~~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~~~~~~~~i~~~d 229 (269)
+|+.+ +++|++.++.+||||||||+||||++. +++|+|
T Consensus 250 ~g~~s-------------~~e~~e~i~~~Tr~yAKRQ~TWfr~~~-----~~~w~~ 287 (307)
T PRK00091 250 DGEIS-------------LEEAIEKIKQATRQYAKRQLTWFRRQP-----DIHWLD 287 (307)
T ss_pred cCCCC-------------HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCeeec
Confidence 99876 789999999999999999999999864 367877
No 8
>PLN02840 tRNA dimethylallyltransferase
Probab=100.00 E-value=6.6e-65 Score=483.99 Aligned_cols=217 Identities=30% Similarity=0.536 Sum_probs=193.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||+||..||+.++++|||+||||||++|||||||||.+|+.+|||||+|+++|+++||+++|.++|.++|++|
T Consensus 27 ~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~A~~~I~~i 106 (421)
T PLN02840 27 SGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDDARRATQDI 106 (421)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcchh-------------------------------------------------------
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSI------------------------------------------------------- 105 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~------------------------------------------------------- 105 (269)
+++|++||||||||||++||++|.+
T Consensus 107 ~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~DP~A~~i~pnD~~Ri~RA 186 (421)
T PLN02840 107 LNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGDPKARSLPRNDWYRLRRS 186 (421)
T ss_pred HhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccCcHHHhcCCCcHHHHHHH
Confidence 9999999999999999999998731
Q ss_pred -----------hhhc----------------------------cccceEEEEEeCCHHHHHHHHHHHHHHHHH--cCcHH
Q 044048 106 -----------INFR----------------------------ANYDCCFIWMDVDPLVLYKYVGIRVDKMVE--TGLVD 144 (269)
Q Consensus 106 -----------~~~~----------------------------~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~--~Gll~ 144 (269)
+.|. .+|++++++|.+|+++|++||++||++|++ +||++
T Consensus 187 LEV~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~L~~dR~~Ly~RI~~Rvd~Ml~~~~GLle 266 (421)
T PLN02840 187 LEIIKSSGSPPSAFSLPYDSFREQLVTEDTDSSLEDGSSAETELDYDFLCFFLSSPRLDLYRSIDLRCEEMLAGTNGILS 266 (421)
T ss_pred HHHHHHHCCCHHHhhccccchhhccccccccccccccccccCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHcccCHHH
Confidence 0111 025677899999999999999999999999 99999
Q ss_pred HHHhhcCCCCCcc-cccccccCHHHHHHHHh------cccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 044048 145 EVRDMFDPNADYN-RGIRRSIGAPELHEYLK------LESNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRL 217 (269)
Q Consensus 145 Ev~~l~~~~~~~~-~~~~qaIGykE~~~yl~------~~~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~ 217 (269)
||+.|++.+.+.+ .+++|+|||||+++||+ |+.+. +.+.++++.++++||||||||+||||++
T Consensus 267 EV~~Ll~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~G~~s~----------ee~~~~~e~i~~~TRqYAKRQ~TWFR~~ 336 (421)
T PLN02840 267 EASWLLDLGLLPNSNSATRAIGYRQAMEYLLQCRQNGGESSP----------QEFLAFLSKFQTASRNFAKRQMTWFRNE 336 (421)
T ss_pred HHHHHHHcCCCccccchHHHhcHHHHHHHHHhhcccCCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999998766554 58999999999999998 76652 1234567999999999999999999986
Q ss_pred hcccCCeeEEeccch
Q 044048 218 RNELGWKIHRIDATY 232 (269)
Q Consensus 218 ~~~~~~~i~~~d~t~ 232 (269)
. .++|+|+++
T Consensus 337 ~-----~~~w~~~~~ 346 (421)
T PLN02840 337 P-----IYHWLDASQ 346 (421)
T ss_pred C-----CCeEecCCC
Confidence 3 378888643
No 9
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=100.00 E-value=9.2e-61 Score=431.69 Aligned_cols=184 Identities=39% Similarity=0.647 Sum_probs=159.3
Q ss_pred cceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhh--
Q 044048 29 IQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSII-- 106 (269)
Q Consensus 29 ~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~-- 106 (269)
|||||||||||||||++|+.+|||||+|+++|+++||+++|+++|.++|++|+++|++||||||||||++||++|...
T Consensus 1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~~p 80 (253)
T PF01715_consen 1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLADIP 80 (253)
T ss_dssp STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS--TS
T ss_pred CCccCCCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhhhc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998420
Q ss_pred ------------------------------------------------------------hh------ccccceEEEEEe
Q 044048 107 ------------------------------------------------------------NF------RANYDCCFIWMD 120 (269)
Q Consensus 107 ------------------------------------------------------------~~------~~~~~~~~~~l~ 120 (269)
.+ ..+|+++++||+
T Consensus 81 ~~~~~~r~~~~~~~~~~~~~~l~~~L~~~DP~~A~~i~~nd~~Ri~RALei~~~tG~~~s~~~~~~~~~~~~~~~~i~L~ 160 (253)
T PF01715_consen 81 EVDPELRAELRAELEEEGNEELYEELKEVDPEAAAKIHPNDRRRIIRALEIYELTGKPPSEWQKKQKPPPRYDFLVIGLD 160 (253)
T ss_dssp SSHHHHHHHHHHHHHHSCHHHHHHHHHHC-HHHHCTS-TT-HHHHHHHHHHHHHHSS-HHHHHHCHHHCBSSEEEEEEEE
T ss_pred cccHHHHHHHHHHHHhccHHHHHHHHHhhCcHhhhcCCCCcHHHHHHHHHHHHhcCCChhHhhhcccccccCCeEEEEeC
Confidence 00 125889999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCCCCcccccccccCHHHHHHHHhcccCccccccccchHHHHHHHHHHHH
Q 044048 121 VDPLVLYKYVGIRVDKMVETGLVDEVRDMFDPNADYNRGIRRSIGAPELHEYLKLESNVKNETTNNNKDLLLKKAIQEIK 200 (269)
Q Consensus 121 ~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~~~~~~~~~~qaIGykE~~~yl~~~~~~d~~~~~~~~~~~~~~~ie~ik 200 (269)
+|++.|++||++||++|+++||++||+.|++.+.+.+.+++|+||||||++||+|+.+ +++|++.++
T Consensus 161 ~~r~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~~~~~~~~aIGYkE~~~~l~g~~~-------------~~e~~e~i~ 227 (253)
T PF01715_consen 161 RDREELYERINKRVDEMLEQGLLEEVRALLERGLPPDLPAMQAIGYKEFIDYLEGEIS-------------LEEAIERIK 227 (253)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTGGTTSCGGGSTTHHHHHHHHTTSSC-------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhceeeehHHHHHhhcCCCC-------------HHHHHHHHH
Confidence 9999999999999999999999999999999987788899999999999999999876 789999999
Q ss_pred HHHHHHHHHHHHHHhchhcccCCeeEEecc
Q 044048 201 DNTCKLVDKQVQKIKRLRNELGWKIHRIDA 230 (269)
Q Consensus 201 ~~TrqyAkrQ~tW~r~~~~~~~~~i~~~d~ 230 (269)
.+||||||||+|||||+. .++|+|.
T Consensus 228 ~~TrqyAKRQ~TWfr~~~-----~~~w~d~ 252 (253)
T PF01715_consen 228 TNTRQYAKRQRTWFRNQP-----NIHWIDI 252 (253)
T ss_dssp HHHHHHHHHHHHHHHTTS-----SEEEEET
T ss_pred HHHHHHHHHHHHHhCCCC-----CCeeeeC
Confidence 999999999999999975 3888885
No 10
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=100.00 E-value=5.5e-33 Score=242.56 Aligned_cols=210 Identities=21% Similarity=0.269 Sum_probs=157.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCC-CCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEA-DYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~-~~~~~~f~~~a~~~i~~ 79 (269)
+||||||||++|++||+++|+|||++|++|||.+++|||+||+++|+.+++|+++|-....+ .+++.++.+.+...+.+
T Consensus 7 ~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~Li~~v~~ 86 (233)
T PF01745_consen 7 VGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERLISEVNS 86 (233)
T ss_dssp E-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHHHHHHHT
T ss_pred ECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHHHHHHHh
Confidence 59999999999999999999999999999999999999999999999999999999888877 89999999999999998
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeC-CHHHHHHHHHHHHHHHHH-----cCcHHHHHhhcCCC
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDV-DPLVLYKYVGIRVDKMVE-----TGLVDEVRDMFDPN 153 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~-~~e~L~~Ri~~Rv~~Ml~-----~Gll~Ev~~l~~~~ 153 (269)
+.+ ++.+|+.|||.+.++.+.... .+..+|.+.+..+.. +++....|+.+||.+|+. .++++|+..++..
T Consensus 87 ~~~-~~~~IlEGGSISLl~~m~~~~--~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~~Sll~EL~~lW~~- 162 (233)
T PF01745_consen 87 YSA-HGGLILEGGSISLLNCMAQDP--YWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSGPSLLEELVALWND- 162 (233)
T ss_dssp TTT-SSEEEEEE--HHHHHHHHH-T--TTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SSS--HHHHHHHHHTS-
T ss_pred ccc-cCceEEeCchHHHHHHHHhcc--cccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhC-
Confidence 876 888999999999999988742 344567777777754 567888999999999997 4799999999976
Q ss_pred CCccccccccc-CHHHHHHHHhcc-cCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 044048 154 ADYNRGIRRSI-GAPELHEYLKLE-SNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRL 217 (269)
Q Consensus 154 ~~~~~~~~qaI-GykE~~~yl~~~-~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~ 217 (269)
+..+++++.| ||+-++.|.+.. .+.+.- .....++.++.++.|......||..|.+=|-..
T Consensus 163 -p~~r~~ledIdGyr~~i~~a~~~~v~~~~l--~~~~~~~~~~Li~~ia~eY~~ha~~QEq~F~~~ 225 (233)
T PF01745_consen 163 -PALRPILEDIDGYRYIIRFARKHQVTPDQL--LSIDLDMLQELIEGIAEEYLEHAQWQEQEFPQV 225 (233)
T ss_dssp -TTHHHHHTTSTTHHHHHHHHHHTT--GGGC--CG-THHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred -ccccchHhhhccHHHHHHHHHHhCCCHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3567789999 999999999764 222211 112337789999999999999999999887654
No 11
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.27 E-value=7.5e-12 Score=115.62 Aligned_cols=122 Identities=16% Similarity=0.244 Sum_probs=92.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCe-eeeCCccc------------------eecCCccccCCCCHhhhcCCCceecccCCCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGE-AINSDKIQ------------------VYKGLDIATNKVTESERQGVPHHLLGFVDPE 61 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e-iIs~Ds~Q------------------vYk~l~I~Takpt~~e~~~v~hhl~~~~~~~ 61 (269)
.||||||||++|..||.++|.+ ||+.|+++ .|..+++.|++|+.++ ||+.+++++.
T Consensus 98 ~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~-----~~l~g~~~~~ 172 (301)
T PRK04220 98 GGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEP-----PVIYGFERHV 172 (301)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCch-----hhhhhHHHHH
Confidence 4999999999999999999987 99999999 9999999999999776 9999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEe-CCHHHHHHHHHHHHHHH
Q 044048 62 ADYPVEEFCEHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMD-VDPLVLYKYVGIRVDKM 137 (269)
Q Consensus 62 ~~~~~~~f~~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~-~~~e~L~~Ri~~Rv~~M 137 (269)
+.++++ +...|+..+.+|. .+|+-|.++.-. ++.. ......+++.+++. .+.+...+|...|...|
T Consensus 173 ~~v~~g-----i~~~I~~~~~~g~-s~IiEGvhl~P~-~i~~---~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 173 EPVSVG-----VEAVIERALKEGI-SVIIEGVHIVPG-FIKE---KYLENPNVFMFVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred HHHHHH-----HHHHHHHHHHhCC-cEEEecCCCCHH-HHHH---hhhcCCCEEEEEEEECCHHHHHHHHHHHHhhh
Confidence 666655 7778888888886 556666644211 1110 00112234455555 57789999999999888
No 12
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.11 E-value=1.2e-10 Score=99.53 Aligned_cols=138 Identities=17% Similarity=0.279 Sum_probs=101.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceec-CCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYK-GLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk-~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+|+.|+||||++..||+.+|.+++..|..---+ +|+|.. .- +.+....|++.-.+.|++
T Consensus 8 iG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~e----IF----------------~~~GE~~FR~~E~~vl~~ 67 (172)
T COG0703 8 IGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAE----IF----------------EEEGEEGFRRLETEVLKE 67 (172)
T ss_pred EcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHH----HH----------------HHHhHHHHHHHHHHHHHH
Confidence 699999999999999999999999999854333 444332 22 245788999999999999
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHH-HHHHHHHHcCcH-HHHHhhcCCCCCcc
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVG-IRVDKMVETGLV-DEVRDMFDPNADYN 157 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~-~Rv~~Ml~~Gll-~Ev~~l~~~~~~~~ 157 (269)
+...+...|..||.... ...+..+. .-...++||++|.+.|++|++ .+....+..+-. +++++|++...+.
T Consensus 68 l~~~~~~ViaTGGG~v~-----~~enr~~l-~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~- 140 (172)
T COG0703 68 LLEEDNAVIATGGGAVL-----SEENRNLL-KKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPL- 140 (172)
T ss_pred HhhcCCeEEECCCcccc-----CHHHHHHH-HhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHH-
Confidence 98888767777776432 22111111 113488999999999999999 666777777766 6799999764333
Q ss_pred cccccccCHHHHHHHH
Q 044048 158 RGIRRSIGAPELHEYL 173 (269)
Q Consensus 158 ~~~~qaIGykE~~~yl 173 (269)
|+|+..|.
T Consensus 141 --------Y~e~a~~~ 148 (172)
T COG0703 141 --------YREVADFI 148 (172)
T ss_pred --------HHHhCcEE
Confidence 88886664
No 13
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.10 E-value=1.8e-11 Score=103.75 Aligned_cols=115 Identities=15% Similarity=0.121 Sum_probs=77.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHH--------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEH-------- 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~-------- 72 (269)
+||+|||||+|+..|++.++...++ ..+.|.+|...+..+.+||+++.-.+...+..++|...
T Consensus 7 ~G~~GsGKsTl~~~L~~~~~~~~~~---------~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (180)
T TIGR03263 7 SGPSGVGKSTLVKALLEEDPNLKFS---------ISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYY 77 (180)
T ss_pred ECCCCCCHHHHHHHHHccCcccccc---------ccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeee
Confidence 5999999999999999987664433 26788999998999999998874433322333333222
Q ss_pred --HHHHHHHHHhcCCceEEEcc---cHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 73 --ALRAIDKIIENGHLPIIVGG---SNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 73 --a~~~i~~i~~~~~~pIivGG---t~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
....|+.++..|+++|+... ...+.+++. ....++++.++.+.+.+|+.+|.
T Consensus 78 ~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~----------~~~~i~~~~~~~e~~~~Rl~~r~ 134 (180)
T TIGR03263 78 GTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFP----------DAVSIFILPPSLEELERRLRKRG 134 (180)
T ss_pred CCcHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC----------CcEEEEEECCCHHHHHHHHHHcC
Confidence 25667888899999888543 333322221 12344455677899999998884
No 14
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.07 E-value=3.6e-11 Score=104.02 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=77.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHH----------HH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEE----------FC 70 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~----------f~ 70 (269)
+||+|||||+|+..|+..++ . +|..++++|.+|+..|..|.+||+++.......+..+. +.
T Consensus 11 ~G~sGsGKstl~~~l~~~~~-~--------~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 81 (205)
T PRK00300 11 SGPSGAGKSTLVKALLERDP-N--------LQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYY 81 (205)
T ss_pred ECCCCCCHHHHHHHHHhhCc-c--------ceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccc
Confidence 59999999999999999875 2 67888899999999999999999876433322111111 11
Q ss_pred HHHHHHHHHHHhcCCceEEE---cccHHHHHHHHcchhhhhccccceEEEE-EeCCHHHHHHHHHHHH
Q 044048 71 EHALRAIDKIIENGHLPIIV---GGSNTYIEALVEDSIINFRANYDCCFIW-MDVDPLVLYKYVGIRV 134 (269)
Q Consensus 71 ~~a~~~i~~i~~~~~~pIiv---GGt~~Y~~~ll~g~~~~~~~~~~~~~~~-l~~~~e~L~~Ri~~Rv 134 (269)
......|+..+..|+.+|+. +|...+.+.+. +..+++ +.++.+++.+|+..|-
T Consensus 82 ~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~-----------~~~~I~i~~~s~~~l~~Rl~~R~ 138 (205)
T PRK00300 82 GTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMP-----------DAVSIFILPPSLEELERRLRGRG 138 (205)
T ss_pred cCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCC-----------CcEEEEEECcCHHHHHHHHHhcC
Confidence 11356678888999988774 33322222111 234444 4667899999999885
No 15
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.06 E-value=6.2e-11 Score=97.53 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=78.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHH---------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCE--------- 71 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~--------- 71 (269)
+||||||||+|+..|++.++..+. .-...+|.+|...|..+++||+++..++.+.+..+.|..
T Consensus 5 ~GpsGsGKstl~~~L~~~~~~~~~--------~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~y 76 (137)
T cd00071 5 SGPSGVGKSTLLKRLLEEFDPNFG--------FSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYY 76 (137)
T ss_pred ECCCCCCHHHHHHHHHhcCCccce--------ecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEe
Confidence 599999999999999998764311 112337999999999999999998766655444444444
Q ss_pred -HHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCC
Q 044048 72 -HALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVD 122 (269)
Q Consensus 72 -~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~ 122 (269)
...+.++++++.|++||+.. +...++.+... .++..++++.+|
T Consensus 77 g~~~~~i~~~~~~g~~~il~~-~~~~~~~l~~~-------~~~~~~I~i~~~ 120 (137)
T cd00071 77 GTSKAAVEEALAEGKIVILEI-DVQGARQVKKS-------YPDAVSIFILPP 120 (137)
T ss_pred cCcHHHHHHHHhCCCeEEEEe-cHHHHHHHHHc-------CCCeEEEEEECC
Confidence 56778899999999888775 55555555542 346788999998
No 16
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.95 E-value=6.9e-09 Score=86.69 Aligned_cols=111 Identities=18% Similarity=0.263 Sum_probs=68.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||++|..|++.++..+|+.|++..+..+.... .+.++. ..+...|.....+.+...
T Consensus 4 ~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~--------~~~~~~---------~~~~~~~~~~~~~~~~~~ 66 (163)
T TIGR01313 4 MGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMS--------AGIPLN---------DDDRWPWLQNLNDASTAA 66 (163)
T ss_pred ECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHH--------cCCCCC---------hhhHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999986543222111 111110 012234444444455555
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhh-ccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINF-RANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~-~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
...|+..|+.-|. + -+.... .+ ....++.++||++|.+++.+|+..|.
T Consensus 67 l~~~~~~Vi~~t~-~-~~~~r~----~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 115 (163)
T TIGR01313 67 AAKNKVGIITCSA-L-KRHYRD----ILREAEPNLHFIYLSGDKDVILERMKARK 115 (163)
T ss_pred HhcCCCEEEEecc-c-HHHHHH----HHHhcCCCEEEEEEeCCHHHHHHHHHhcc
Confidence 5667655554432 2 111111 01 11245678999999999999999995
No 17
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.94 E-value=9.4e-09 Score=86.87 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=69.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||+|+..||..++...|+.|.++.-... . | ...|.++. + -+...|...........
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~--~--~----~~~g~~~~--------~-~~~~~~~~~~~~~~~~~ 63 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNI--E--K----MASGEPLN--------D-DDRKPWLQALNDAAFAM 63 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhh--c--c----ccCCCCCC--------h-hhHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999976421110 0 0 01122211 1 13344555544444444
Q ss_pred HhcCCceEEEcccHHH--HHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTY--IEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y--~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
...+..+|++ .|.+. ++.++. ....++.++||++|.+++.+|+..|-
T Consensus 64 ~~~~~~~viv-~s~~~~~~r~~~~------~~~~~~~~v~l~a~~~~l~~Rl~~R~ 112 (163)
T PRK11545 64 QRTNKVSLIV-CSALKKHYRDLLR------EGNPNLSFIYLKGDFDVIESRLKARK 112 (163)
T ss_pred HHcCCceEEE-EecchHHHHHHHH------ccCCCEEEEEEECCHHHHHHHHHhcc
Confidence 4456667777 45442 111121 12356899999999999999999995
No 18
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.93 E-value=2.2e-09 Score=89.63 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=73.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||++|..||+.++..+++.|.+- +. .++.+..+ + -+.+....|.....+.+..+
T Consensus 10 ~G~~GsGKstla~~La~~l~~~~~d~d~~~--~~---~~g~~~~~-----------~---~~~~g~~~~~~~~~~~~~~l 70 (175)
T PRK00131 10 IGFMGAGKSTIGRLLAKRLGYDFIDTDHLI--EA---RAGKSIPE-----------I---FEEEGEAAFRELEEEVLAEL 70 (175)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCEEEChHHH--HH---HcCCCHHH-----------H---HHHHCHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999752 11 11111111 1 01235567888888888888
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.......|.+||+..+-..... .+ +.....+||++|.+.+.+|+.+|.
T Consensus 71 ~~~~~~vi~~g~~~~~~~~~r~----~l--~~~~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 71 LARHNLVISTGGGAVLREENRA----LL--RERGTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred HhcCCCEEEeCCCEeecHHHHH----HH--HhCCEEEEEECCHHHHHHHhcCCC
Confidence 7766666777776443222111 11 123578999999999999998764
No 19
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.93 E-value=2.6e-09 Score=91.06 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=75.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||+++..||+.++.++|+.|..- +++.+. ++-...+.+....|+....+.++++
T Consensus 10 iG~~GaGKStl~~~La~~l~~~~vd~D~~i--------------~~~~g~-----~i~~~~~~~g~~~fr~~e~~~l~~l 70 (172)
T PRK05057 10 VGPMGAGKSTIGRQLAQQLNMEFYDSDQEI--------------EKRTGA-----DIGWVFDVEGEEGFRDREEKVINEL 70 (172)
T ss_pred ECCCCcCHHHHHHHHHHHcCCcEEECCchH--------------HHHhCc-----CHhHHHHHhCHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999731 112111 1111223468889999988999998
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
...+.++|.+||+...-. .+..+. +....++||++|.+++.+|+..|
T Consensus 71 ~~~~~~vi~~ggg~v~~~-----~~~~~l-~~~~~vv~L~~~~e~~~~Ri~~~ 117 (172)
T PRK05057 71 TEKQGIVLATGGGSVKSR-----ETRNRL-SARGVVVYLETTIEKQLARTQRD 117 (172)
T ss_pred HhCCCEEEEcCCchhCCH-----HHHHHH-HhCCEEEEEeCCHHHHHHHHhCC
Confidence 777777777877643211 111111 11247899999999999998643
No 20
>PRK13946 shikimate kinase; Provisional
Probab=98.87 E-value=4e-09 Score=90.58 Aligned_cols=108 Identities=22% Similarity=0.335 Sum_probs=71.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|++|||||++|..||+++|.++|.+|.+- +.+ .+. +..+. -+.|....|+....+.+..+
T Consensus 16 ~G~~GsGKsti~~~LA~~Lg~~~id~D~~~--~~~---~g~-~~~e~-------------~~~~ge~~~~~~e~~~l~~l 76 (184)
T PRK13946 16 VGLMGAGKSTVGRRLATMLGLPFLDADTEI--ERA---ARM-TIAEI-------------FAAYGEPEFRDLERRVIARL 76 (184)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCeECcCHHH--HHH---hCC-CHHHH-------------HHHHCHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999631 111 010 11111 11356677888888888888
Q ss_pred HhcCCceEEEcccHHHH-HHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYI-EALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~-~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
...+.. ||++|.|.|+ ..... .+ +-....+||++|.+.+.+|+..|-
T Consensus 77 ~~~~~~-Vi~~ggg~~~~~~~r~----~l--~~~~~~v~L~a~~e~~~~Rl~~r~ 124 (184)
T PRK13946 77 LKGGPL-VLATGGGAFMNEETRA----AI--AEKGISVWLKADLDVLWERVSRRD 124 (184)
T ss_pred HhcCCe-EEECCCCCcCCHHHHH----HH--HcCCEEEEEECCHHHHHHHhcCCC
Confidence 777654 5555544332 11110 01 113477999999999999998874
No 21
>PRK00625 shikimate kinase; Provisional
Probab=98.77 E-value=1.7e-08 Score=86.46 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=80.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceec-CCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYK-GLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk-~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+|++|||||+++..||++++.++|++|.+-.-+ +++. . .+..|. -+.+....|++....+++.
T Consensus 6 iG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~--~-~~i~ei-------------f~~~Ge~~fr~~E~~~l~~ 69 (173)
T PRK00625 6 CGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGAL--Y-SSPKEI-------------YQAYGEEGFCREEFLALTS 69 (173)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCC--C-CCHHHH-------------HHHHCHHHHHHHHHHHHHH
Confidence 599999999999999999999999999763221 2110 0 112221 1245777899998888888
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHH-HHHHcCcHHHHHhhcCC
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVD-KMVETGLVDEVRDMFDP 152 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~-~Ml~~Gll~Ev~~l~~~ 152 (269)
+.. +...|.+||....-.... .. .+...+++||++|.+++.+||..|-. +... + .+++.+++..
T Consensus 70 l~~-~~~VIs~GGg~~~~~e~~-----~~-l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~-~-~~~~~~ll~~ 134 (173)
T PRK00625 70 LPV-IPSIVALGGGTLMIEPSY-----AH-IRNRGLLVLLSLPIATIYQRLQKRGLPERLK-H-APSLEEILSQ 134 (173)
T ss_pred hcc-CCeEEECCCCccCCHHHH-----HH-HhcCCEEEEEECCHHHHHHHHhcCCCCcccC-c-HHHHHHHHHH
Confidence 754 555555666532111111 11 12245789999999999999998721 1111 1 4566666644
No 22
>PRK13948 shikimate kinase; Provisional
Probab=98.76 E-value=1.4e-08 Score=87.69 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=80.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|+.|||||+++..||++++.++|.+|..- .+. +++ +..+. -+.+....|++.-.++++++
T Consensus 16 iG~~GsGKSTvg~~La~~lg~~~iD~D~~i-e~~----~g~-si~~i-------------f~~~Ge~~fR~~E~~~l~~l 76 (182)
T PRK13948 16 AGFMGTGKSRIGWELSRALMLHFIDTDRYI-ERV----TGK-SIPEI-------------FRHLGEAYFRRCEAEVVRRL 76 (182)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEECCHHH-HHH----HhC-CHHHH-------------HHHhCHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999532 111 011 11111 01356788999888889998
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHHHHHcC-cHHHHHhhcCC
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDKMVETG-LVDEVRDMFDP 152 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~G-ll~Ev~~l~~~ 152 (269)
...+...|.+||... +...+...... ...++||+++.+.+.+||..+-..++..+ ..+++.++++.
T Consensus 77 ~~~~~~VIa~GgG~v-----~~~~n~~~l~~-~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~ 143 (182)
T PRK13948 77 TRLDYAVISLGGGTF-----MHEENRRKLLS-RGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNE 143 (182)
T ss_pred HhcCCeEEECCCcEE-----cCHHHHHHHHc-CCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHH
Confidence 777776666766422 11111111011 24678999999999999965433344322 24556666544
No 23
>PRK06217 hypothetical protein; Validated
Probab=98.75 E-value=6.6e-08 Score=82.78 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=61.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|++||||||||..||+.+|.++|+.|.+. .. |+ +.+ + ...-....+.+.+.+ .+
T Consensus 7 ~G~~GsGKSTla~~L~~~l~~~~~~~D~~~--~~-------~~-----~~~--~------~~~~~~~~~~~~~~~---~~ 61 (183)
T PRK06217 7 TGASGSGTTTLGAALAERLDIPHLDTDDYF--WL-------PT-----DPP--F------TTKRPPEERLRLLLE---DL 61 (183)
T ss_pred ECCCCCCHHHHHHHHHHHcCCcEEEcCcee--ec-------cC-----CCC--c------cccCCHHHHHHHHHH---HH
Confidence 599999999999999999999999999854 31 11 000 0 000122233332222 22
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
..+.--||.|+-..|.+.+.. ..+ .++||++|.++..+|+.+|-
T Consensus 62 -~~~~~~vi~G~~~~~~~~~~~--------~~d-~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 62 -RPREGWVLSGSALGWGDPLEP--------LFD-LVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred -hcCCCEEEEccHHHHHHHHHh--------hCC-EEEEEECCHHHHHHHHHcCc
Confidence 334445666655544443332 223 57899999999999999983
No 24
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.73 E-value=2.7e-08 Score=81.61 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=70.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||++|..||+.++..++++|.+- .+.. .. +..+. .+.++...|.....+++..+
T Consensus 5 ~G~~GsGKstla~~la~~l~~~~~~~d~~~-~~~~----~~-~~~~~-------------~~~~~~~~~~~~e~~~~~~~ 65 (154)
T cd00464 5 IGMMGAGKTTVGRLLAKALGLPFVDLDELI-EQRA----GM-SIPEI-------------FAEEGEEGFRELEREVLLLL 65 (154)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCEEEchHHH-HHHc----CC-CHHHH-------------HHHHCHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999652 1110 00 11111 11235567777777788888
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
...+.. ||++|++..+..-. ... ......++||++|.+++.+|+.+|
T Consensus 66 ~~~~~~-vi~~g~~~i~~~~~----~~~-~~~~~~~i~l~~~~e~~~~R~~~r 112 (154)
T cd00464 66 LTKENA-VIATGGGAVLREEN----RRL-LLENGIVVWLDASPEELLERLARD 112 (154)
T ss_pred hccCCc-EEECCCCccCcHHH----HHH-HHcCCeEEEEeCCHHHHHHHhccC
Confidence 776664 44445444222110 000 122457899999999999999877
No 25
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.72 E-value=2.5e-08 Score=80.82 Aligned_cols=111 Identities=22% Similarity=0.264 Sum_probs=67.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHH----HHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCE----HALRA 76 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~----~a~~~ 76 (269)
+||+|||||++|..|++.++..+|+.|.++ ..+. ++..|+. . ...+... .....
T Consensus 5 ~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~--~~~~-~~~~~~~------------------~-~~~~~~~~~~~~~~~~ 62 (143)
T PF13671_consen 5 CGPPGSGKSTLAKRLAKRLGAVVISQDEIR--RRLA-GEDPPSP------------------S-DYIEAEERAYQILNAA 62 (143)
T ss_dssp EESTTSSHHHHHHHHHHHSTEEEEEHHHHH--HHHC-CSSSGCC------------------C-CCHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHCCCEEEeHHHHH--HHHc-ccccccc------------------h-hHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999954 2210 0111111 1 1112223 33344
Q ss_pred HHHHHhcCCceEEEcccHHHHHHHHcchhhhh-ccccceEEEEEeCCHHHHHHHHHHHHH
Q 044048 77 IDKIIENGHLPIIVGGSNTYIEALVEDSIINF-RANYDCCFIWMDVDPLVLYKYVGIRVD 135 (269)
Q Consensus 77 i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~-~~~~~~~~~~l~~~~e~L~~Ri~~Rv~ 135 (269)
+....+.|. ++|+-.|+++-...-. ....+ ...++..+++|+++.+++.+|+..|..
T Consensus 63 ~~~~l~~g~-~~vvd~~~~~~~~r~~-~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 63 IRKALRNGN-SVVVDNTNLSREERAR-LRELARKHGYPVRVVYLDAPEETLRERLAQRNR 120 (143)
T ss_dssp HHHHHHTT--EEEEESS--SHHHHHH-HHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred HHHHHHcCC-CceeccCcCCHHHHHH-HHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence 555556665 5777777665322210 00011 124678899999999999999999963
No 26
>PRK13947 shikimate kinase; Provisional
Probab=98.69 E-value=5.6e-08 Score=81.60 Aligned_cols=108 Identities=20% Similarity=0.221 Sum_probs=68.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||++|..||+++|.++|+.|..- +.+ ++.+..+.. +.+....|+....+.++.+
T Consensus 7 ~G~~GsGKst~a~~La~~lg~~~id~d~~~--~~~---~g~~~~~~~--------------~~~ge~~~~~~e~~~~~~l 67 (171)
T PRK13947 7 IGFMGTGKTTVGKRVATTLSFGFIDTDKEI--EKM---TGMTVAEIF--------------EKDGEVRFRSEEKLLVKKL 67 (171)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCEEECchhh--hhh---cCCcHHHHH--------------HHhChHHHHHHHHHHHHHH
Confidence 599999999999999999999999999842 221 222211111 1234456777767778777
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
..++...|-+||. . +++........+. ..++||++|.+.+.+|+..|
T Consensus 68 ~~~~~~vi~~g~g-~----vl~~~~~~~l~~~-~~vv~L~~~~~~l~~Rl~~r 114 (171)
T PRK13947 68 ARLKNLVIATGGG-V----VLNPENVVQLRKN-GVVICLKARPEVILRRVGKK 114 (171)
T ss_pred hhcCCeEEECCCC-C----cCCHHHHHHHHhC-CEEEEEECCHHHHHHHhcCC
Confidence 6655544445543 2 1111100000112 35899999999999999866
No 27
>PRK13949 shikimate kinase; Provisional
Probab=98.67 E-value=5.6e-08 Score=82.72 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=69.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||.|||||+++..||+.++..+|+.|.+- -+. +++ +..+. -+.+....|++...++++++
T Consensus 7 iG~~GsGKstl~~~La~~l~~~~id~D~~i-~~~----~~~-~~~~~-------------~~~~g~~~fr~~e~~~l~~l 67 (169)
T PRK13949 7 VGYMGAGKTTLGKALARELGLSFIDLDFFI-ENR----FHK-TVGDI-------------FAERGEAVFRELERNMLHEV 67 (169)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCeecccHHH-HHH----HCc-cHHHH-------------HHHhCHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999642 111 111 11111 11346778888888888887
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGI 132 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~ 132 (269)
...+...|.+||... ....+.....+ ...+|||++|.+.+.+||..
T Consensus 68 ~~~~~~vis~Ggg~~-----~~~~~~~~l~~-~~~vi~L~~~~~~~~~Ri~~ 113 (169)
T PRK13949 68 AEFEDVVISTGGGAP-----CFFDNMELMNA-SGTTVYLKVSPEVLFVRLRL 113 (169)
T ss_pred HhCCCEEEEcCCccc-----CCHHHHHHHHh-CCeEEEEECCHHHHHHHHhc
Confidence 555555555666522 10000011111 23678999999999999864
No 28
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.67 E-value=3.9e-08 Score=82.42 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=72.9
Q ss_pred CcCchhHHHHHHHHHcCCeeeeCCccceec-CCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHHHh
Q 044048 4 TATGKTKLSIDLAIHFSGEAINSDKIQVYK-GLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKIIE 82 (269)
Q Consensus 4 TgsGKS~la~~LA~~~~~eiIs~Ds~QvYk-~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i~~ 82 (269)
.||||||++..||+.++.++|..|.+-..+ |++|.. .- .......|++.-.+++.++..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~----i~----------------~~~G~~~fr~~E~~~l~~l~~ 60 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISE----IF----------------AEEGEEAFRELESEALRELLK 60 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHH----HH----------------HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHH----HH----------------HcCChHHHHHHHHHHHHHHhc
Confidence 599999999999999999999999975433 433332 11 123677889999999999987
Q ss_pred cCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHH
Q 044048 83 NGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVD 135 (269)
Q Consensus 83 ~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~ 135 (269)
.+...|.+||....-.... .+. +-...+|||+.+.+.+.+|+..+-.
T Consensus 61 ~~~~VIa~GGG~~~~~~~~-----~~L-~~~g~vI~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 61 ENNCVIACGGGIVLKEENR-----ELL-KENGLVIYLDADPEELAERLRARDN 107 (158)
T ss_dssp SSSEEEEE-TTGGGSHHHH-----HHH-HHHSEEEEEE--HHHHHHHHHHHCT
T ss_pred cCcEEEeCCCCCcCcHHHH-----HHH-HhCCEEEEEeCCHHHHHHHHhCCCC
Confidence 7777777877643211111 110 1245799999999999999977753
No 29
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=9.8e-08 Score=79.75 Aligned_cols=127 Identities=17% Similarity=0.263 Sum_probs=90.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|..|||||+++..||++++++.|..|.++--.+.+-+++-.++.+- +-.-|.+....++...
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~Dd-----------------DR~pWL~~l~~~~~~~ 63 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDD-----------------DRWPWLEALGDAAASL 63 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcc-----------------hhhHHHHHHHHHHHHh
Confidence 69999999999999999999999999999865554433322222211 3344556666666666
Q ss_pred HhcCCceEEEcccHH---HHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCC
Q 044048 81 IENGHLPIIVGGSNT---YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDP 152 (269)
Q Consensus 81 ~~~~~~pIivGGt~~---Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~ 152 (269)
...|+. +|+..|.+ |-.-|-.+ .....|+||+.+.+.+.+|+..|-...+...|++---..++.
T Consensus 64 ~~~~~~-~vi~CSALKr~YRD~LR~~-------~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~ 130 (161)
T COG3265 64 AQKNKH-VVIACSALKRSYRDLLREA-------NPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEE 130 (161)
T ss_pred hcCCCc-eEEecHHHHHHHHHHHhcc-------CCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcC
Confidence 667774 45556644 33222221 124789999999999999999998888888888887777764
No 30
>PRK07261 topology modulation protein; Provisional
Probab=98.65 E-value=1.7e-07 Score=79.74 Aligned_cols=95 Identities=15% Similarity=0.257 Sum_probs=63.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|++||||||||..|++.++.++|+.|.+....+. + +.+..+|...+ .++
T Consensus 6 ~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---~-----------------------~~~~~~~~~~~----~~~ 55 (171)
T PRK07261 6 IGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---Q-----------------------ERDDDDMIADI----SNF 55 (171)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---c-----------------------cCCHHHHHHHH----HHH
Confidence 59999999999999999999999999998742221 0 11233444444 444
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
..++. .|+.|+. ...+... .+ ...+ .++||++|+.....|+-+|.
T Consensus 56 ~~~~~--wIidg~~--~~~~~~~---~l-~~ad-~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 56 LLKHD--WIIDGNY--SWCLYEE---RM-QEAD-QIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred HhCCC--EEEcCcc--hhhhHHH---HH-HHCC-EEEEEcCCHHHHHHHHHHHH
Confidence 45554 6777773 3222211 11 1223 67999999999999998886
No 31
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.65 E-value=2.2e-07 Score=79.71 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=66.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH-----
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR----- 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~----- 75 (269)
+||+|||||||+..|+..++.+++-.|+.- |..+... +..++ .++..+|.++...
T Consensus 8 ~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~ 67 (186)
T PRK10078 8 MGPSGSGKDSLLAALRQREQTQLLVAHRYI--------TRPASAG---SENHI---------ALSEQEFFTRAGQNLFAL 67 (186)
T ss_pred ECCCCCCHHHHHHHHhccCCCeEEEcCEEC--------CCccchh---HHhhe---------eEcHHHHHHHHHCCchhh
Confidence 599999999999999999887776666532 1111111 11111 1223333332111
Q ss_pred -------------HHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 76 -------------AIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 76 -------------~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.++...+.|+ +||++|+..+...+... + .-...++||++|.+++.+|+..|
T Consensus 68 ~~~~~g~~yg~~~~~~~~l~~g~-~VI~~G~~~~~~~~~~~----~--~~~~~vi~l~~s~e~l~~RL~~R 131 (186)
T PRK10078 68 SWHANGLYYGVGIEIDLWLHAGF-DVLVNGSRAHLPQARAR----Y--QSALLPVCLQVSPEILRQRLENR 131 (186)
T ss_pred HHHHhCCccCCcHHHHHHHhCCC-EEEEeChHHHHHHHHHH----c--CCCEEEEEEeCCHHHHHHHHHHh
Confidence 2445556777 46678887776655541 1 22467789999999999999887
No 32
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.62 E-value=9.3e-09 Score=88.97 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=76.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHH--------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEH-------- 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~-------- 72 (269)
+||+|||||+|+..|.+.++. ++.-.+.+|.+|.+.|..|+.||+++.-+.......+.|.+.
T Consensus 10 ~GpsG~GK~tl~~~l~~~~~~---------~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 10 SSVAGGGKSTIIQALLEEHPD---------FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred ECCCCCCHHHHHHHHHhcCCc---------cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 599999999999999987532 233458899999999999999998854332222112222222
Q ss_pred --HHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhcccc--ceEEEEEeC-CHHHHHHHHHHH
Q 044048 73 --ALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANY--DCCFIWMDV-DPLVLYKYVGIR 133 (269)
Q Consensus 73 --a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~--~~~~~~l~~-~~e~L~~Ri~~R 133 (269)
..+.|+..++.|+++|+.--.. -++.+- ..+ ...+|++.+ +.+.+.+|+.+|
T Consensus 81 Gt~~~~i~~~~~~g~~~i~d~~~~-g~~~l~--------~~~~~~~~~Ifi~pps~e~l~~RL~~R 137 (186)
T PRK14737 81 GTPKAFIEDAFKEGRSAIMDIDVQ-GAKIIK--------EKFPERIVTIFIEPPSEEEWEERLIHR 137 (186)
T ss_pred cCcHHHHHHHHHcCCeEEEEcCHH-HHHHHH--------HhCCCCeEEEEEECCCHHHHHHHHHhc
Confidence 3466888889999998873221 111111 112 125677776 578999999888
No 33
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.60 E-value=2.5e-07 Score=76.05 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=63.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHH-H
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAID-K 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~-~ 79 (269)
+||+||||||+|..|++.++..+|+.|.+- +... . .....+.+ ..+. .-..|.......+. .
T Consensus 5 ~G~~GsGKST~a~~l~~~~~~~~i~~D~~~--~~~~-~-----~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~ 67 (150)
T cd02021 5 MGVSGSGKSTVGKALAERLGAPFIDGDDLH--PPAN-I-----AKMAAGIP--------LNDE-DRWPWLQALTDALLAK 67 (150)
T ss_pred EcCCCCCHHHHHHHHHhhcCCEEEeCcccc--cHHH-H-----HHHHcCCC--------CCcc-chhhHHHHHHHHHHHH
Confidence 599999999999999999999999999864 3211 0 00011111 0000 01233333333222 2
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
+.+.|...|+. .+++. +....-. ..+....++.++++++|.+++.+|+.+|-
T Consensus 68 l~~~~~~vVid-~~~~~-~~~r~~~-~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 68 LASAGEGVVVA-CSALK-RIYRDIL-RGGAANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred HHhCCCCEEEE-ecccc-HHHHHHH-HhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence 32456544444 44321 1111100 00101356789999999999999999994
No 34
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.57 E-value=8.4e-08 Score=80.71 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=70.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce-ecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV-YKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv-Yk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+|++|||||++|..||+++|.++++.|.+.- ..++++. +. -+.+....|++...++++.
T Consensus 8 ~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~-------~~-------------~~~~g~~~~~~~e~~~~~~ 67 (171)
T PRK03731 8 VGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVA-------EI-------------VEREGWAGFRARESAALEA 67 (171)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHH-------HH-------------HHHHCHHHHHHHHHHHHHH
Confidence 5999999999999999999999999998641 1132221 11 0124577788888888865
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
+ ..+...|.+||+.. +...+..+. +....++||++|.+.+.+|+..|
T Consensus 68 ~-~~~~~vi~~ggg~v-----l~~~~~~~l-~~~~~~v~l~~~~~~~~~Rl~~r 114 (171)
T PRK03731 68 V-TAPSTVIATGGGII-----LTEENRHFM-RNNGIVIYLCAPVSVLANRLEAN 114 (171)
T ss_pred h-cCCCeEEECCCCcc-----CCHHHHHHH-HhCCEEEEEECCHHHHHHHHccc
Confidence 4 55565555666522 121111111 11346899999999999999876
No 35
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.56 E-value=5.7e-07 Score=77.12 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=77.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCC-----------CCCHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEA-----------DYPVEEF 69 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~-----------~~~~~~f 69 (269)
+||+||||++|+..|.+.++-. +..-..-+|..|.+.|..|+.||+++.-.... .|+ +.|
T Consensus 8 ~Gpsg~GK~tl~~~L~~~~~~~--------~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~-g~~ 78 (184)
T smart00072 8 SGPSGVGKGTLLAELIQEIPDA--------FERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYS-GNY 78 (184)
T ss_pred ECCCCCCHHHHHHHHHhcCCcc--------eEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEc-CcC
Confidence 5999999999999999986421 23445678888889999999999875221111 111 122
Q ss_pred HHHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEe-CCHHHHHHHHHHH
Q 044048 70 CEHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMD-VDPLVLYKYVGIR 133 (269)
Q Consensus 70 ~~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~-~~~e~L~~Ri~~R 133 (269)
.--..+.|+++.+.|+.+|+.+. .-.+..|-. ......++++. ++.++|.+|+.+|
T Consensus 79 YGt~~~~i~~~~~~~~~~ild~~-~~~~~~l~~-------~~~~~~vIfi~~~s~~~l~~rl~~R 135 (184)
T smart00072 79 YGTSKETIRQVAEQGKHCLLDID-PQGVKQLRK-------AQLYPIVIFIAPPSSEELERRLRGR 135 (184)
T ss_pred cccCHHHHHHHHHcCCeEEEEEC-HHHHHHHHH-------hCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 33344567777788998888865 333333332 12355788887 5667899999887
No 36
>PRK08118 topology modulation protein; Reviewed
Probab=98.53 E-value=7.5e-07 Score=75.65 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+||||||||..|++.++.++++.|.+.-..+. . ..+.. ...+.++++
T Consensus 7 ~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w----------------------~----~~~~~----~~~~~~~~~ 56 (167)
T PRK08118 7 IGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNW----------------------E----GVPKE----EQITVQNEL 56 (167)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCceecchhhcccCC----------------------c----CCCHH----HHHHHHHHH
Confidence 59999999999999999999999999986421110 0 11122 233444455
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVD 135 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~ 135 (269)
.++.. -|+.|.-+..+...+. . .-.++||++|.++...|+-+|.-
T Consensus 57 ~~~~~-wVidG~~~~~~~~~l~--------~-~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 57 VKEDE-WIIDGNYGGTMDIRLN--------A-ADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred hcCCC-EEEeCCcchHHHHHHH--------h-CCEEEEEeCCHHHHHHHHHHHHH
Confidence 44433 5666654333322221 2 23679999999999999999973
No 37
>PLN02199 shikimate kinase
Probab=98.51 E-value=3.5e-07 Score=84.62 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=75.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc--eecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ--VYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAID 78 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q--vYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~ 78 (269)
+|++|||||+++..||+.+|.++|.+|.+- .+.|++ ..+. -+.+....|++.-.++++
T Consensus 108 IG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~s-------I~eI-------------f~~~GE~~FR~~E~e~L~ 167 (303)
T PLN02199 108 VGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTS-------VAEI-------------FVHHGENFFRGKETDALK 167 (303)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCC-------HHHH-------------HHHhCHHHHHHHHHHHHH
Confidence 599999999999999999999999999743 222322 2222 124678899999999999
Q ss_pred HHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHH
Q 044048 79 KIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGI 132 (269)
Q Consensus 79 ~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~ 132 (269)
++.......|-+||.. ++...+..+. . ...++||++|.+.|.+||..
T Consensus 168 ~L~~~~~~VIStGGG~-----V~~~~n~~~L-~-~G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 168 KLSSRYQVVVSTGGGA-----VIRPINWKYM-H-KGISIWLDVPLEALAHRIAA 214 (303)
T ss_pred HHHhcCCEEEECCCcc-----cCCHHHHHHH-h-CCeEEEEECCHHHHHHHHhh
Confidence 9876666666677753 2222111111 1 34789999999999999974
No 38
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.50 E-value=2e-07 Score=73.55 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=27.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||+.+|..+|++|.+
T Consensus 5 ~G~~gsGKST~a~~La~~~~~~~i~~d~~ 33 (121)
T PF13207_consen 5 SGPPGSGKSTLAKELAERLGFPVISMDDL 33 (121)
T ss_dssp EESTTSSHHHHHHHHHHHHTCEEEEEHHH
T ss_pred ECCCCCCHHHHHHHHHHHHCCeEEEecce
Confidence 49999999999999999999999999993
No 39
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.49 E-value=1.4e-07 Score=94.01 Aligned_cols=127 Identities=16% Similarity=0.201 Sum_probs=83.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceec-CCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYK-GLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk-~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+|+.|||||+++..||+++|.++|.+|..-.-+ |++| .|. -+.+....|++.-.+++++
T Consensus 12 iG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si-------~ei-------------f~~~Ge~~FR~~E~~~l~~ 71 (542)
T PRK14021 12 IGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSI-------PSY-------------FEEYGEPAFREVEADVVAD 71 (542)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCH-------HHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999842211 3322 221 1145788999999999999
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchhhhhc---cccceEEEEEeCCHHHHHHHHHHHH-HHHHHcCcHHHHHhhcCC
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSIINFR---ANYDCCFIWMDVDPLVLYKYVGIRV-DKMVETGLVDEVRDMFDP 152 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~---~~~~~~~~~l~~~~e~L~~Ri~~Rv-~~Ml~~Gll~Ev~~l~~~ 152 (269)
+.......|.+||... +...+.... .+....++||+++.+.+.+|+..+- +.++...-.+++++|++.
T Consensus 72 ~~~~~~~VIs~GGG~v-----~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~ 143 (542)
T PRK14021 72 MLEDFDGIFSLGGGAP-----MTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQ 143 (542)
T ss_pred HHhcCCeEEECCCchh-----CCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHH
Confidence 8765554555777632 111111100 0123478999999999999986431 223432234677777754
No 40
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.48 E-value=6.9e-07 Score=76.36 Aligned_cols=108 Identities=26% Similarity=0.363 Sum_probs=73.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHH--------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEH-------- 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~-------- 72 (269)
+||+|||||+|+..|.+.++..+ ..-...+|.+|.+.|..|+.||+++ -.+|.++
T Consensus 8 ~Gpsg~GK~~l~~~L~~~~~~~~--------~~~v~~TTR~~r~~E~~g~~y~fvs---------~~~f~~~~~~~~fie 70 (183)
T PF00625_consen 8 VGPSGSGKSTLAKRLIQEFPDKF--------GRVVSHTTRPPRPGEVDGVDYHFVS---------KEEFERMIKAGEFIE 70 (183)
T ss_dssp ESSTTSSHHHHHHHHHHHSTTTE--------EEEEEEESS-GGTTS-TTTSEEE-----------HHHHHHHHHTTHEEE
T ss_pred ECCCCCCHHHHHHHHHHhccccc--------ccceeecccCCcccccCCcceEEEe---------echhhhhhccccEEE
Confidence 59999999999999999987532 1334568999999999999999764 2333322
Q ss_pred -----------HHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCC-HHHHHHHHHHH
Q 044048 73 -----------ALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVD-PLVLYKYVGIR 133 (269)
Q Consensus 73 -----------a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~-~e~L~~Ri~~R 133 (269)
....|+.+.+.|+.+|+.... --++.|-. ....+.++++.++ .+.|.+|+.+|
T Consensus 71 ~~~~~g~~YGt~~~~i~~~~~~gk~~il~~~~-~g~~~L~~-------~~~~~~~IfI~~~s~~~l~~~l~~r 135 (183)
T PF00625_consen 71 YGEYDGNYYGTSKSAIDKVLEEGKHCILDVDP-EGVKQLKK-------AGFNPIVIFIKPPSPEVLKRRLRRR 135 (183)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTTEEEEEETH-HHHHHHHH-------CTTTEEEEEEEESSHHHHHHHHHTT
T ss_pred EeeecchhhhhccchhhHhhhcCCcEEEEccH-HHHHHHHh-------cccCceEEEEEccchHHHHHHHhcc
Confidence 345677788899988887542 22233332 2456788888655 68888888766
No 41
>PRK03839 putative kinase; Provisional
Probab=98.47 E-value=4.4e-07 Score=77.16 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=27.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|++||||||+|..||++++.++|++|.+
T Consensus 6 ~G~pGsGKsT~~~~La~~~~~~~id~d~~ 34 (180)
T PRK03839 6 TGTPGVGKTTVSKLLAEKLGYEYVDLTEF 34 (180)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEehhhh
Confidence 59999999999999999999999999964
No 42
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.46 E-value=1.3e-06 Score=74.95 Aligned_cols=110 Identities=22% Similarity=0.362 Sum_probs=64.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||+|+..|+..++...|+.|.+. ..-++ .....++++. + + ....|.......+...
T Consensus 9 ~G~sGsGKSTl~~~la~~l~~~~i~gd~~~--~~~~~------r~~~~g~~~~-----~--~--~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 9 MGVSGSGKSLIGSKIAALFSAKFIDGDDLH--PAKNI------DKMSQGIPLT-----D--E--DRLPWLERLNDASYSL 71 (176)
T ss_pred ECCCCCCHHHHHHHHHHhcCCEEECCcccC--CHhHH------HHHhcCCCCC-----c--c--cchHHHHHHHHHHHHH
Confidence 599999999999999999998888777652 11000 0111233322 1 1 1113444444443333
Q ss_pred HhcCCceEEEcccHHH--HHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTY--IEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y--~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
..+++--+++ .|.+. .+.++. ....++.++||+++.+++.+|+.+|-
T Consensus 72 ~~~~~~g~iv-~s~~~~~~R~~~r------~~~~~~~~v~l~a~~~~l~~Rl~~R~ 120 (176)
T PRK09825 72 YKKNETGFIV-CSSLKKQYRDILR------KSSPNVHFLWLDGDYETILARMQRRA 120 (176)
T ss_pred HhcCCCEEEE-EEecCHHHHHHHH------hhCCCEEEEEEeCCHHHHHHHHhccc
Confidence 3333334455 44321 222332 12346789999999999999999995
No 43
>PRK06762 hypothetical protein; Provisional
Probab=98.44 E-value=1e-06 Score=73.68 Aligned_cols=117 Identities=14% Similarity=0.260 Sum_probs=68.7
Q ss_pred CCCCcCchhHHHHHHHHHc--CCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF--SGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAID 78 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~--~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~ 78 (269)
+|++||||||+|..|++.+ +..+|+.|.+. +.+. ...+....+....+. ..+.
T Consensus 8 ~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r--~~l~-------------------~~~~~~~~~~~~~~~----~~~~ 62 (166)
T PRK06762 8 RGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR--RDML-------------------RVKDGPGNLSIDLIE----QLVR 62 (166)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH--HHhc-------------------cccCCCCCcCHHHHH----HHHH
Confidence 5999999999999999998 46678887754 2220 000000112222222 2233
Q ss_pred HHHhcCCceEEEcccHH---H---HHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCc-HHHHHhhcC
Q 044048 79 KIIENGHLPIIVGGSNT---Y---IEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGL-VDEVRDMFD 151 (269)
Q Consensus 79 ~i~~~~~~pIivGGt~~---Y---~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gl-l~Ev~~l~~ 151 (269)
.....|.. |++.|+.. | ++.+.. ....++..+||++|.++..+|+.+|.. ..++ .+++..+++
T Consensus 63 ~~~~~g~~-vild~~~~~~~~~~~~~~l~~------~~~~~~~~v~Ldap~e~~~~R~~~R~~---~~~~~~~~l~~~~~ 132 (166)
T PRK06762 63 YGLGHCEF-VILEGILNSDRYGPMLKELIH------LFRGNAYTYYFDLSFEETLRRHSTRPK---SHEFGEDDMRRWWN 132 (166)
T ss_pred HHHhCCCE-EEEchhhccHhHHHHHHHHHH------hcCCCeEEEEEeCCHHHHHHHHhcccc---cccCCHHHHHHHHh
Confidence 34456764 44455521 1 222222 112467899999999999999999963 2233 566666664
Q ss_pred C
Q 044048 152 P 152 (269)
Q Consensus 152 ~ 152 (269)
.
T Consensus 133 ~ 133 (166)
T PRK06762 133 P 133 (166)
T ss_pred h
Confidence 4
No 44
>PRK04182 cytidylate kinase; Provisional
Probab=98.43 E-value=4.3e-07 Score=76.25 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=58.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|++|||||++|..||+++|.++|++|. +++.+.--.+ .+..+.. ... ...+. +.......+..+
T Consensus 6 ~G~~GsGKstia~~la~~lg~~~id~~~--~~~~~~~~~g-~~~~~~~--------~~~-~~~~~---~~~~~~~~~~~~ 70 (180)
T PRK04182 6 SGPPGSGKTTVARLLAEKLGLKHVSAGE--IFRELAKERG-MSLEEFN--------KYA-EEDPE---IDKEIDRRQLEI 70 (180)
T ss_pred ECCCCCCHHHHHHHHHHHcCCcEecHHH--HHHHHHHHcC-CCHHHHH--------HHh-hcCch---HHHHHHHHHHHH
Confidence 5999999999999999999999999763 2222100000 0111111 000 00111 112223334444
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
...+...|+.|..+.+ ++. ......+||++|.+.+.+|+..|
T Consensus 71 ~~~~~~~Vi~g~~~~~---~~~--------~~~~~~V~l~a~~e~~~~Rl~~r 112 (180)
T PRK04182 71 AEKEDNVVLEGRLAGW---MAK--------DYADLKIWLKAPLEVRAERIAER 112 (180)
T ss_pred HhcCCCEEEEEeecce---Eec--------CCCCEEEEEECCHHHHHHHHHhc
Confidence 3244445555532221 111 11347789999999999999877
No 45
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.43 E-value=3.4e-07 Score=90.23 Aligned_cols=125 Identities=13% Similarity=0.226 Sum_probs=82.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|+.|||||+++..||+.++.++|++|..- .+. ++++ ..+. -..+....|++.-.+.++++
T Consensus 6 ~G~~GsGKSTv~~~La~~lg~~~id~D~~i-~~~----~g~~-i~~i-------------~~~~Ge~~fr~~E~~~l~~l 66 (488)
T PRK13951 6 VGMMGSGKSTIGKRVSEVLDLQFIDMDEEI-ERR----EGRS-VRRI-------------FEEDGEEYFRLKEKELLREL 66 (488)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEECcHHH-HHH----cCCC-HHHH-------------HHHhhhHHHHHHHHHHHHHH
Confidence 599999999999999999999999999753 110 1111 1111 11356778888888888888
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCC
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDP 152 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~ 152 (269)
.......|-+||+- +++..+.....+ ..++||+++.+++.+|+..|-+.++..+ .++++++++.
T Consensus 67 ~~~~~~Vis~Gggv-----v~~~~~r~~l~~--~~vI~L~as~e~l~~Rl~~~~RPLl~~~-~e~l~~L~~~ 130 (488)
T PRK13951 67 VERDNVVVATGGGV-----VIDPENRELLKK--EKTLFLYAPPEVLMERVTTENRPLLREG-KERIREIWER 130 (488)
T ss_pred hhcCCEEEECCCcc-----ccChHHHHHHhc--CeEEEEECCHHHHHHHhccCCCCCcccc-HHHHHHHHHH
Confidence 76666555566652 222111111111 2479999999999999987654444433 5677777654
No 46
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.42 E-value=8.5e-07 Score=75.11 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=63.1
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
+|++|||||++|..|++.++ ..+++.|.+ ++.+ ++- + .+ .++..+.......
T Consensus 13 ~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~--r~~~---------------~~~--~-~~---~~~~~~~~~~~~~ 69 (176)
T PRK05541 13 TGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL--REIL---------------GHY--G-YD---KQSRIEMALKRAK 69 (176)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH--Hhhc---------------CCC--C-CC---HHHHHHHHHHHHH
Confidence 59999999999999999986 345555543 2221 000 0 00 0111111111111
Q ss_pred HHHHHHhcCCceEEEcccHHH--HHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCC
Q 044048 76 AIDKIIENGHLPIIVGGSNTY--IEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDP 152 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~Y--~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~ 152 (269)
..+.+...|...|+.| ++.+ +..+.. ... ..++.+||++|.+++.+|+.++ ++.....+|+..++..
T Consensus 70 l~~~l~~~g~~VI~~~-~~~~~~~~~~~~----~~~--~~~~~v~l~~~~e~~~~R~~~~---l~~~~~~~~~~~~~~~ 138 (176)
T PRK05541 70 LAKFLADQGMIVIVTT-ISMFDEIYAYNR----KHL--PNYFEVYLKCDMEELIRRDQKG---LYTKALKGEIKNVVGV 138 (176)
T ss_pred HHHHHHhCCCEEEEEe-CCcHHHHHHHHH----hhc--CCeEEEEEeCCHHHHHHhchhh---HHHHHHcCcccccccC
Confidence 2222445676555554 4443 222221 111 1346899999999999998754 3333344566666644
No 47
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.39 E-value=1.7e-06 Score=73.46 Aligned_cols=107 Identities=22% Similarity=0.369 Sum_probs=72.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH-----
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR----- 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~----- 75 (269)
.||+||||||+|..||+.+|.++||+-- +||+| ..|++ ++..+|.+.|..
T Consensus 6 sG~pGsG~TTva~~lAe~~gl~~vsaG~--iFR~~--------A~e~g---------------msl~ef~~~AE~~p~iD 60 (179)
T COG1102 6 SGLPGSGKTTVARELAEHLGLKLVSAGT--IFREM--------ARERG---------------MSLEEFSRYAEEDPEID 60 (179)
T ss_pred ccCCCCChhHHHHHHHHHhCCceeeccH--HHHHH--------HHHcC---------------CCHHHHHHHHhcCchhh
Confidence 4999999999999999999999999765 67776 55554 677777777653
Q ss_pred -HH----HHHHhcCCceEEEcccHHHHHHHHcchhhhhcc-ccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhh
Q 044048 76 -AI----DKIIENGHLPIIVGGSNTYIEALVEDSIINFRA-NYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDM 149 (269)
Q Consensus 76 -~i----~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~-~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l 149 (269)
.+ .++..++. ||+.|- |.| |.. .+.-+.+||.+|.++..+||.+|= .+-++|+...
T Consensus 61 ~~iD~rq~e~a~~~n--vVlegr-------LA~----Wi~k~~adlkI~L~Apl~vRa~Ria~RE-----gi~~~~a~~~ 122 (179)
T COG1102 61 KEIDRRQKELAKEGN--VVLEGR-------LAG----WIVREYADLKIWLKAPLEVRAERIAKRE-----GIDVDEALAE 122 (179)
T ss_pred HHHHHHHHHHHHcCC--eEEhhh-------hHH----HHhccccceEEEEeCcHHHHHHHHHHhc-----CCCHHHHHHH
Confidence 11 12323333 344332 111 111 245577999999999999999994 3344454444
Q ss_pred c
Q 044048 150 F 150 (269)
Q Consensus 150 ~ 150 (269)
.
T Consensus 123 ~ 123 (179)
T COG1102 123 T 123 (179)
T ss_pred H
Confidence 3
No 48
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.38 E-value=1.3e-06 Score=74.02 Aligned_cols=116 Identities=10% Similarity=0.108 Sum_probs=61.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+||||||++..||+.+|..++++|.+- .+.+.-++ +....... +..-...+............+...
T Consensus 9 ~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~-~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~ 78 (188)
T TIGR01360 9 VGGPGSGKGTQCEKIVEKYGFTHLSTGDLL-RAEVASGS--ERGKQLQA-------IMESGDLVPLDTVLDLLKDAMVAA 78 (188)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEeHHHHH-HHHHhcCC--HHHHHHHH-------HHHCCCCCCHHHHHHHHHHHHHcc
Confidence 599999999999999999999999997642 12222111 11111110 000011111222222223333333
Q ss_pred HhcCCceEEEcccHH---HHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNT---YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~---Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
...++..|+. |... ..+.+-. . ......+++|++|.+.+.+|+.+|
T Consensus 79 ~~~~~~~i~d-g~~~~~~q~~~~~~----~--~~~~~~vi~l~~~~~~~~~Rl~~R 127 (188)
T TIGR01360 79 LGTSKGFLID-GYPREVKQGEEFER----R--IGPPTLVLYFDCSEDTMVKRLLKR 127 (188)
T ss_pred cCcCCeEEEe-CCCCCHHHHHHHHH----c--CCCCCEEEEEECCHHHHHHHHHcc
Confidence 3455544444 4321 1222211 0 112457899999999999999888
No 49
>PRK08233 hypothetical protein; Provisional
Probab=98.37 E-value=2.3e-06 Score=72.04 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=59.0
Q ss_pred CCCCcCchhHHHHHHHHHcC-CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
.|++||||||||..||+.++ ..++..|.... . . .| .+.....+.-.++ +.+....+ .+.+..
T Consensus 9 ~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~--~--~---~~--~~~~~~~~~~~~~----~~~~~~~~----~~~l~~ 71 (182)
T PRK08233 9 AAVSGGGKTTLTERLTHKLKNSKALYFDRYDF--D--N---CP--EDICKWIDKGANY----SEWVLTPL----IKDIQE 71 (182)
T ss_pred ECCCCCCHHHHHHHHHhhCCCCceEEECCEEc--c--c---Cc--hhhhhhhhccCCh----hhhhhHHH----HHHHHH
Confidence 49999999999999999996 45776776531 1 0 01 1111110100000 12333333 333444
Q ss_pred HHhcCCce-EEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 80 IIENGHLP-IIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 80 i~~~~~~p-IivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
..+...++ |+++|...+...-+ ...++ ..+||++|.+++.+|+.+|-
T Consensus 72 ~~~~~~~~~vivd~~~~~~~~~~-------~~~~d-~~i~l~~~~~~~~~R~~~R~ 119 (182)
T PRK08233 72 LIAKSNVDYIIVDYPFAYLNSEM-------RQFID-VTIFIDTPLDIAMARRILRD 119 (182)
T ss_pred HHcCCCceEEEEeeehhhccHHH-------HHHcC-EEEEEcCCHHHHHHHHHHHH
Confidence 44445334 45565532221111 11223 78999999999888877775
No 50
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.36 E-value=2.1e-07 Score=80.51 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=72.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHH----------HHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVE----------EFC 70 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~----------~f~ 70 (269)
+||+|+|||||...|-+..+. +--.+-+|.+|.+.|..|+.+|+++.-...+-.+-. .|.
T Consensus 10 sgPSG~GKsTl~k~L~~~~~l----------~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyY 79 (191)
T COG0194 10 SGPSGVGKSTLVKALLEDDKL----------RFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYY 79 (191)
T ss_pred ECCCCCCHHHHHHHHHhhcCe----------EEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcc
Confidence 599999999999999888732 233457899999999999999988643322211111 222
Q ss_pred HHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhcccc-ceEEEEEeCC-HHHHHHHHHHH
Q 044048 71 EHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANY-DCCFIWMDVD-PLVLYKYVGIR 133 (269)
Q Consensus 71 ~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~-~~~~~~l~~~-~e~L~~Ri~~R 133 (269)
--....++...+.|+.+|+.= .......+ +..+ +.+.|++.|| .++|.+||..|
T Consensus 80 GT~~~~ve~~~~~G~~vildI-d~qGa~qv--------k~~~p~~v~IFi~pPs~eeL~~RL~~R 135 (191)
T COG0194 80 GTSREPVEQALAEGKDVILDI-DVQGALQV--------KKKMPNAVSIFILPPSLEELERRLKGR 135 (191)
T ss_pred cCcHHHHHHHHhcCCeEEEEE-ehHHHHHH--------HHhCCCeEEEEEcCCCHHHHHHHHHcc
Confidence 223445555666666555441 11111111 1122 6677887765 58999999888
No 51
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.35 E-value=4.1e-06 Score=76.61 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=64.9
Q ss_pred CCCCcCchhHHHHHHHHHc-CCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCC---HHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF-SGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYP---VEEFCEHALRA 76 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~---~~~f~~~a~~~ 76 (269)
+||+||||||+|..|++++ +..+||.|.+. +.+. +.+. .. . ..|+ ...........
T Consensus 8 ~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r--~~~~-~~~~-----~~--------~----~~~~~~~~~~~~~~~~~~ 67 (300)
T PHA02530 8 VGVPGSGKSTWAREFAAKNPKAVNVNRDDLR--QSLF-GHGE-----WG--------E----YKFTKEKEDLVTKAQEAA 67 (300)
T ss_pred EcCCCCCHHHHHHHHHHHCCCCEEEeccHHH--HHhc-CCCc-----cc--------c----cccChHHHHHHHHHHHHH
Confidence 4999999999999999999 89999999953 2210 0000 00 0 0111 11112222334
Q ss_pred HHHHHhcCCceEEEcccHH---HHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 77 IDKIIENGHLPIIVGGSNT---YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 77 i~~i~~~~~~pIivGGt~~---Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
+.+....|.. +|+.+|+. +.+.+..- .-...+.+.+++|++|.+++.+|+.+|
T Consensus 68 ~~~~l~~g~~-vIid~~~~~~~~~~~~~~l---a~~~~~~~~~v~l~~~~e~~~~R~~~R 123 (300)
T PHA02530 68 ALAALKSGKS-VIISDTNLNPERRRKWKEL---AKELGAEFEEKVFDVPVEELVKRNRKR 123 (300)
T ss_pred HHHHHHcCCe-EEEeCCCCCHHHHHHHHHH---HHHcCCeEEEEEeCCCHHHHHHHHHcc
Confidence 4455566764 55555543 33332210 001235667899999999999999999
No 52
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.33 E-value=2.2e-06 Score=76.88 Aligned_cols=107 Identities=22% Similarity=0.259 Sum_probs=63.4
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
+|++||||||+|..||+.++ ..+++.|.+. ..++. .+ ..+ ...+......
T Consensus 5 ~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr--~~~~~--------------------~~--~~~-e~~~~~~~~~ 59 (249)
T TIGR03574 5 TGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR--ESFPV--------------------WK--EKY-EEFIRDSTLY 59 (249)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH--HHhHH--------------------hh--HHh-HHHHHHHHHH
Confidence 59999999999999999873 3456666532 11100 00 001 1122333345
Q ss_pred HHHHHHhcCCceEEEcccHHHHHHHHcchhhhh-ccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 76 AIDKIIENGHLPIIVGGSNTYIEALVEDSIINF-RANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~-~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.++...++|.. ||+.|+++| +.......... ....+++++|+++|.+.+.+|...|-
T Consensus 60 ~i~~~l~~~~~-VI~D~~~~~-~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~ 117 (249)
T TIGR03574 60 LIKTALKNKYS-VIVDDTNYY-NSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred HHHHHHhCCCe-EEEeccchH-HHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCC
Confidence 66667777764 666666544 22221110001 12356789999999999999998884
No 53
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.31 E-value=2.5e-06 Score=74.10 Aligned_cols=31 Identities=29% Similarity=0.269 Sum_probs=28.1
Q ss_pred CCCCcCchhHHHHHHHHHc-CCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHF-SGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-~~eiIs~Ds~Qv 31 (269)
.|++|||||+||..|++.+ +..+|+.|.+..
T Consensus 5 ~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 5 SGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 4999999999999999999 689999998664
No 54
>PRK06547 hypothetical protein; Provisional
Probab=98.30 E-value=4.1e-06 Score=71.65 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=61.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
.||+|||||+||..||+.++.++|+.|+. |++.+= .+. +...+.-+++..-.+. .+. .+|......... .
T Consensus 21 ~G~~GsGKTt~a~~l~~~~~~~~~~~d~~--~~~~~~---~~~--~~~~l~~~~l~~g~~~-~~~-yd~~~~~~~~~~-~ 90 (172)
T PRK06547 21 DGRSGSGKTTLAGALAARTGFQLVHLDDL--YPGWHG---LAA--ASEHVAEAVLDEGRPG-RWR-WDWANNRPGDWV-S 90 (172)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeecccce--eccccc---CCh--HHHHHHHHHHhCCCCc-eec-CCCCCCCCCCcE-E
Confidence 49999999999999999999999999994 554211 010 0000111111100000 000 011111000000 1
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
...+.+.|+.|+..++ ..+.. .+.......+|||++|.++..+|+.+|
T Consensus 91 l~~~~vVIvEG~~al~-~~~r~----~~d~~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 91 VEPGRRLIIEGVGSLT-AANVA----LASLLGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred eCCCCeEEEEehhhcc-HHHHH----HhccCCCEEEEEEECCHHHHHHHHHhc
Confidence 1234455566665443 23211 111223357899999999999999999
No 55
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.27 E-value=7.2e-06 Score=69.59 Aligned_cols=118 Identities=13% Similarity=0.068 Sum_probs=66.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCee--eeCCccceecCCccccCCCCHhhhcCCCceecccCC----CCCCCCHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEA--INSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVD----PEADYPVEEFCEHAL 74 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ei--Is~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~----~~~~~~~~~f~~~a~ 74 (269)
.||+||||||+|..|++.++... ++.|.+... ++ .......+ .+++-. ..+.+ ...+.....
T Consensus 8 ~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~--~~----~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~y~~~~ 75 (175)
T cd00227 8 NGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA--LP----LKCQDAEG-----GIEFDGDGGVSPGPE-FRLLEGAWY 75 (175)
T ss_pred ECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh--cC----hhhccccc-----ccccCccCCcccchH-HHHHHHHHH
Confidence 59999999999999999987654 467764322 11 00000000 111111 11111 112333444
Q ss_pred HHHHHHHhcCCceEEEcccHH---HHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHH
Q 044048 75 RAIDKIIENGHLPIIVGGSNT---YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDK 136 (269)
Q Consensus 75 ~~i~~i~~~~~~pIivGGt~~---Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~ 136 (269)
..+..+.+.|...|+. .+.. .++..+. .+ ...++.++|+.+|.+++.+|+.+|-+.
T Consensus 76 ~~~~~~l~~G~~VIvD-~~~~~~~~~r~~~~----~~-~~~~~~~v~l~~~~~~l~~R~~~R~~~ 134 (175)
T cd00227 76 EAVAAMARAGANVIAD-DVFLGRAALQDCWR----SF-VGLDVLWVGVRCPGEVAEGRETARGDR 134 (175)
T ss_pred HHHHHHHhCCCcEEEe-eeccCCHHHHHHHH----Hh-cCCCEEEEEEECCHHHHHHHHHhcCCc
Confidence 5566777888865554 4322 1211111 11 124678999999999999999998543
No 56
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.27 E-value=4.8e-06 Score=70.90 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=27.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+|||||++|..||+.+|..+|++|.+
T Consensus 5 ~G~pGsGKst~a~~La~~~~~~~i~~~~l 33 (194)
T cd01428 5 LGPPGSGKGTQAERLAKKYGLPHISTGDL 33 (194)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEECcHH
Confidence 59999999999999999999999999874
No 57
>PRK14531 adenylate kinase; Provisional
Probab=98.27 E-value=4.3e-06 Score=71.59 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=26.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||+.+|...||++.+
T Consensus 8 ~G~pGsGKsT~~~~la~~~g~~~is~gd~ 36 (183)
T PRK14531 8 LGPPGAGKGTQAARLCAAHGLRHLSTGDL 36 (183)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeEecccH
Confidence 59999999999999999999999999554
No 58
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.26 E-value=2e-06 Score=79.96 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=69.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|+.|||||+++..||+.+|.++|.+|.. +.+.. +. +..+. ...+....|.....+.+.++
T Consensus 139 ~G~~GsGKStvg~~La~~Lg~~~id~D~~-i~~~~----G~-~i~ei-------------~~~~G~~~fr~~e~~~l~~l 199 (309)
T PRK08154 139 IGLRGAGKSTLGRMLAARLGVPFVELNRE-IEREA----GL-SVSEI-------------FALYGQEGYRRLERRALERL 199 (309)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEeHHHH-HHHHh----CC-CHHHH-------------HHHHCHHHHHHHHHHHHHHH
Confidence 59999999999999999999999988843 22211 10 11111 11245778888888888887
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.......||..|.|.+....... .+. -+++++||++|.+.+.+|+.+|
T Consensus 200 l~~~~~~VI~~Ggg~v~~~~~~~---~l~--~~~~~V~L~a~~e~~~~Rl~~r 247 (309)
T PRK08154 200 IAEHEEMVLATGGGIVSEPATFD---LLL--SHCYTVWLKASPEEHMARVRAQ 247 (309)
T ss_pred HhhCCCEEEECCCchhCCHHHHH---HHH--hCCEEEEEECCHHHHHHHHhcC
Confidence 65444344444444322110000 001 1457899999999999999876
No 59
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.26 E-value=5.5e-06 Score=70.17 Aligned_cols=115 Identities=16% Similarity=0.262 Sum_probs=62.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+||||||+|..||+++|..+||+|..- .+.+.- .++..+. +-+.++..+.++.....+...+.+..
T Consensus 5 ~G~pGsGKst~a~~la~~~~~~~is~~d~l-r~~~~~---~~~~~~~------~~~~~~~g~~~~~~~~~~ll~~~~~~- 73 (183)
T TIGR01359 5 LGGPGSGKGTQCAKIVENFGFTHLSAGDLL-RAEIKS---GSENGEL------IESMIKNGKIVPSEVTVKLLKNAIQA- 73 (183)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEECChHH-HHHHhc---CChHHHH------HHHHHHCCCcCCHHHHHHHHHHHHhc-
Confidence 599999999999999999999999985432 223221 1111110 11112222233333333333333322
Q ss_pred HhcCCceEEEcccHH---HHH---HHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNT---YIE---ALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~---Y~~---~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.+.-.+|+.|... ..+ .++.. ....+ .+++|++|.+.+.+|+..|-
T Consensus 74 --~~~~~~vlDg~p~~~~q~~~~~~~~~~-----~~~~d-~~i~l~~~~~~~~~Rl~~R~ 125 (183)
T TIGR01359 74 --DGSKKFLIDGFPRNEENLEAWEKLMDN-----KVNFK-FVLFFDCPEEVMIKRLLKRG 125 (183)
T ss_pred --cCCCcEEEeCCCCCHHHHHHHHHHHhc-----CCCCC-EEEEEECCHHHHHHHHhcCC
Confidence 1233455655421 122 22211 01223 58999999999999999883
No 60
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.25 E-value=3e-06 Score=68.64 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=60.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|++|||||++|..||+.+|.++++.|.+ ..++....... ..+...+.....+.+.++
T Consensus 5 ~G~~GsGKst~a~~la~~~~~~~~~~~~i-------------~~e~~~~~~~~---------~~~~~~i~~~l~~~~~~~ 62 (147)
T cd02020 5 DGPAGSGKSTVAKLLAKKLGLPYLDTGGI-------------RTEEVGKLASE---------VAAIPEVRKALDERQREL 62 (147)
T ss_pred ECCCCCCHHHHHHHHHHHhCCceeccccC-------------CHHHHHHHHHH---------hcccHhHHHHHHHHHHHH
Confidence 59999999999999999999999999921 12222110000 011223444455555565
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.+.+ .+|+-|... ..++ . ......|||++|++...+|+.+|.
T Consensus 63 ~~~~--~~Vidg~~~--~~~~-------~-~~~~~~i~l~~~~~~r~~R~~~r~ 104 (147)
T cd02020 63 AKKP--GIVLEGRDI--GTVV-------F-PDADLKIFLTASPEVRAKRRAKQL 104 (147)
T ss_pred hhCC--CEEEEeeee--eeEE-------c-CCCCEEEEEECCHHHHHHHHHHHH
Confidence 4443 244444421 0011 1 113367999999999999998886
No 61
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.25 E-value=4.5e-07 Score=79.37 Aligned_cols=117 Identities=13% Similarity=0.083 Sum_probs=70.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHH----------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFC---------- 70 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~---------- 70 (269)
+||+|||||+|+..|++. +.. ++.-....|-.|.+.|..|+.||+++--+.......+.|.
T Consensus 19 ~GpsG~GK~tl~~~L~~~-~~~--------~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 19 SGPSGVGKDAVLARMRER-KLP--------FHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred ECcCCCCHHHHHHHHHhc-CCc--------ccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 599999999999999865 211 2233445677777788999999977533211100001111
Q ss_pred HHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEe-CCHHHHHHHHHHHH
Q 044048 71 EHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMD-VDPLVLYKYVGIRV 134 (269)
Q Consensus 71 ~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~-~~~e~L~~Ri~~Rv 134 (269)
--....|+...+.|+++|+. .+.-++..+-.. ..+..++++. ++.++|.+|+..|-
T Consensus 90 Gt~~~~i~~~~~~g~~vi~~-~~~~g~~~l~~~-------~pd~~~if~~pps~e~l~~Rl~~R~ 146 (206)
T PRK14738 90 GVPKAPVRQALASGRDVIVK-VDVQGAASIKRL-------VPEAVFIFLAPPSMDELTRRLELRR 146 (206)
T ss_pred cCCHHHHHHHHHcCCcEEEE-cCHHHHHHHHHh-------CCCeEEEEEeCCCHHHHHHHHHHcC
Confidence 11124677777889877664 454455444321 1234455554 56789999999984
No 62
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.25 E-value=8.3e-07 Score=75.80 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=60.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhh-cCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESER-QGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~-~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+||+|||||++|..++.+++.+++ -|.|++|..+|+ .+|+||.... |. .|..-+.-....++|+.
T Consensus 7 ~G~~~sGKS~~a~~l~~~~~~~~~-----------~iat~~~~~~e~~~ri~~h~~~R--~~-~w~t~E~~~~l~~~i~~ 72 (170)
T PRK05800 7 TGGARSGKSRFAERLAAQSGLQVL-----------YIATAQPFDDEMAARIAHHRQRR--PA-HWQTVEEPLDLAELLRA 72 (170)
T ss_pred ECCCCccHHHHHHHHHHHcCCCcE-----------eCcCCCCChHHHHHHHHHHHhcC--CC-CCeEecccccHHHHHHh
Confidence 599999999999999999875543 388999998887 7899997765 32 34222222233344555
Q ss_pred HHhcCCceEEEcccHHHHHHHHc
Q 044048 80 IIENGHLPIIVGGSNTYIEALVE 102 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~ 102 (269)
..+.+. .|++.+...|+..++.
T Consensus 73 ~~~~~~-~VlID~Lt~~~~n~l~ 94 (170)
T PRK05800 73 DAAPGR-CVLVDCLTTWVTNLLF 94 (170)
T ss_pred hcCCCC-EEEehhHHHHHHHHhc
Confidence 434444 6888888888776664
No 63
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.22 E-value=1.2e-05 Score=68.11 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=32.7
Q ss_pred HHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 78 DKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 78 ~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
......|..+|+.|+ +-++..+... ..+..++||++|.+++.+||..|
T Consensus 84 ~~~~~~g~~vv~~g~-~~~~~~~~~~-------~~~~~~i~l~~~~~~~~~Rl~~R 131 (179)
T TIGR02322 84 DQWLEAGDVVVVNGS-RAVLPEARQR-------YPNLLVVNITASPDVLAQRLAAR 131 (179)
T ss_pred HHHHhcCCEEEEECC-HHHHHHHHHH-------CCCcEEEEEECCHHHHHHHHHHc
Confidence 344467776666655 4455444321 12567899999999999999988
No 64
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.22 E-value=2.9e-06 Score=70.72 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=26.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
.|++|||||++|..||+.+|.++++.|.
T Consensus 6 ~G~~GSGKstia~~la~~lg~~~~~~~~ 33 (171)
T TIGR02173 6 SGPPGSGKTTVAKILAEKLSLKLISAGD 33 (171)
T ss_pred ECCCCCCHHHHHHHHHHHcCCceecHHH
Confidence 4999999999999999999999999975
No 65
>PRK12338 hypothetical protein; Provisional
Probab=98.22 E-value=8.3e-06 Score=76.31 Aligned_cols=133 Identities=19% Similarity=0.233 Sum_probs=73.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee-eCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCC------HHHHHHH-
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI-NSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYP------VEEFCEH- 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI-s~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~------~~~f~~~- 72 (269)
.|++|||||++|..||+++|...+ +.|.+. +-+.-..+++-.-++..-.++-...+.+.+.+. ...|...
T Consensus 10 ~G~sGsGKST~a~~la~~l~~~~~~~tD~~r--~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~gf~~q~ 87 (319)
T PRK12338 10 GSASGIGKSTIASELARTLNIKHLIETDFIR--EVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAGFEEHA 87 (319)
T ss_pred ECCCCCCHHHHHHHHHHHCCCeEEccChHHH--HHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHHHHHHH
Confidence 499999999999999999998866 777755 222111112110111111111122222222222 3345333
Q ss_pred --HHHHHHHHHh---cCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHHHH
Q 044048 73 --ALRAIDKIIE---NGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDKMV 138 (269)
Q Consensus 73 --a~~~i~~i~~---~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml 138 (269)
....|+.+.+ +++.+||+-|.++- -.++.. ..+....+..++++.++.+...+|...|...|-
T Consensus 88 ~~V~~~i~~vi~r~~~~g~svIiEGvhl~-P~~i~~--~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~ 155 (319)
T PRK12338 88 SFVIPAIEKVIERAVTDSDDIVIEGVHLV-PGLIDI--EQFEENASIHFFILSADEEVHKERFVKRAMEIK 155 (319)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecccc-HHHHhh--hhhcccCceEEEEEECCHHHHHHHHHHhhhccC
Confidence 3344444433 57779999998652 111110 011122355677778999999999999997763
No 66
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.21 E-value=9.5e-06 Score=71.95 Aligned_cols=119 Identities=20% Similarity=0.197 Sum_probs=66.1
Q ss_pred CCCCcCchhHHHHHHHHHcC-------CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-------GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-------~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a 73 (269)
.||+||||||||..|+..+. ..+|+.|.+ |.. .+++.... +++..+....|+...+.+..
T Consensus 5 ~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f--~~~---------~~~~~~~~--~~~~~g~p~~~d~~~l~~~L 71 (220)
T cd02025 5 AGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF--LYP---------NKELIERG--LMDRKGFPESYDMEALLKFL 71 (220)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc--cCc---------HHHHHHhh--hhhcCCCcccCCHHHHHHHH
Confidence 59999999999999998873 358999997 332 22221111 12222223467776665544
Q ss_pred HHHHHH---H-------------------HhcCCceEEEcccHHHHHHHHcchh--hhhccccceEEEEEeCCHHHHHHH
Q 044048 74 LRAIDK---I-------------------IENGHLPIIVGGSNTYIEALVEDSI--INFRANYDCCFIWMDVDPLVLYKY 129 (269)
Q Consensus 74 ~~~i~~---i-------------------~~~~~~pIivGGt~~Y~~~ll~g~~--~~~~~~~~~~~~~l~~~~e~L~~R 129 (269)
..+... + ..... .||+-|-.+ |..... ..+..-++ +.+|+++|.+++.+|
T Consensus 72 ~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~-vvIvEG~~~----l~~~~~~~~~l~~~~D-~~ifvd~~~~~~~~r 145 (220)
T cd02025 72 KDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPD-ILIIEGLNV----LQTGQNPRLFVSDFFD-FSIYVDADEDDIEKW 145 (220)
T ss_pred HHHHCCCCcEEccccceeccccCCCCceecCCCC-EEEECCchh----cCCcccchhhHHHhCC-eEEEEECCHHHHHHH
Confidence 333220 0 00111 244444422 111000 00111223 669999999999999
Q ss_pred HHHHHHHHH
Q 044048 130 VGIRVDKMV 138 (269)
Q Consensus 130 i~~Rv~~Ml 138 (269)
+.+|...++
T Consensus 146 l~~R~~r~~ 154 (220)
T cd02025 146 YIKRFLKLR 154 (220)
T ss_pred HHHHHHHHH
Confidence 999987654
No 67
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.17 E-value=5.5e-06 Score=82.31 Aligned_cols=92 Identities=13% Similarity=0.238 Sum_probs=67.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|++|||||++|..+++..+.++||.|.+. + | ..+...+.+.
T Consensus 375 ~G~pGSGKST~A~~l~~~~g~~~vn~D~lg--------~-----------------------------~-~~~~~~a~~~ 416 (526)
T TIGR01663 375 VGFPGAGKSHFCKKFFQPAGYKHVNADTLG--------S-----------------------------T-QNCLTACERA 416 (526)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEECcHHHH--------H-----------------------------H-HHHHHHHHHH
Confidence 599999999999999999999999999741 0 1 2234445666
Q ss_pred HhcCCceEEEcccHHHH---HHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYI---EALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~---~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
+.+|+ +||+..|+..- +.++. ..-...+++.++++++|.+++.+|+..|-
T Consensus 417 L~~G~-sVVIDaTn~~~~~R~~~i~---lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~ 469 (526)
T TIGR01663 417 LDQGK-RCAIDNTNPDAASRAKFLQ---CARAAGIPCRCFLFNAPLAQAKHNIAFRE 469 (526)
T ss_pred HhCCC-cEEEECCCCCHHHHHHHHH---HHHHcCCeEEEEEeCCCHHHHHHHHHhhc
Confidence 67887 78888887642 11111 01123468899999999999999999994
No 68
>PRK14532 adenylate kinase; Provisional
Probab=98.16 E-value=6.9e-06 Score=70.16 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=27.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+||||||+|..||+++|..+|++|.+-
T Consensus 6 ~G~pGsGKsT~a~~la~~~g~~~is~~d~l 35 (188)
T PRK14532 6 FGPPAAGKGTQAKRLVEERGMVQLSTGDML 35 (188)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEeCcHHH
Confidence 599999999999999999999999997643
No 69
>PRK14530 adenylate kinase; Provisional
Probab=98.14 E-value=1.3e-05 Score=70.33 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=27.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+||||||+|..||+.+|.+.|++|.+-
T Consensus 9 ~G~pGsGKsT~~~~La~~~~~~~i~~g~~l 38 (215)
T PRK14530 9 LGAPGAGKGTQSSNLAEEFGVEHVTTGDAL 38 (215)
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEeccHHH
Confidence 599999999999999999999999887654
No 70
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.14 E-value=9.9e-06 Score=71.79 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=27.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
.||+|||||+++..||++++.++++.|.+
T Consensus 8 ~G~~GsGKst~~~~la~~~~~~~~~~g~~ 36 (217)
T TIGR00017 8 DGPSGAGKSTVAKAVAEKLGYAYLDSGAM 36 (217)
T ss_pred ECCCCCCHHHHHHHHHHHhCCceeeCchH
Confidence 49999999999999999999999988875
No 71
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.11 E-value=1.1e-05 Score=70.42 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=62.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||++|..||+++|..+||++.+- .+.+.-.| +..+. .-+.++.....+-....+...+.|...
T Consensus 5 ~G~pGsGKsT~a~~La~~~g~~~is~gdll-r~~~~~~~---~~~~~------~~~~~~~g~~vp~~~~~~l~~~~i~~~ 74 (210)
T TIGR01351 5 LGPPGSGKGTQAKRIAEKYGLPHISTGDLL-RAEIKAGT---PLGKK------AKEYMEKGELVPDEIVNQLVKERLTQN 74 (210)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCeeehhHHH-HHhhcccc---HHHHH------HHHHHhCCCCCCHHHHHHHHHHHHhcC
Confidence 599999999999999999999999997643 12221111 01000 011112222222333334444444332
Q ss_pred HhcCCceEEEccc-HHHHH--HHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGS-NTYIE--ALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt-~~Y~~--~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
...++ .+|+.|. ...-+ +|.. .+ ......+++|++|.+.+.+|+..|
T Consensus 75 ~~~~~-~~ilDGfPrt~~Qa~~l~~----~~-~~~~~~vi~L~~~~~~~~~Rl~~R 124 (210)
T TIGR01351 75 QDNEN-GFILDGFPRTLSQAEALDA----LL-KEKIDAVIELDVPDEELVERLSGR 124 (210)
T ss_pred cccCC-cEEEeCCCCCHHHHHHHHH----Hh-ccCCCEEEEEECCHHHHHHHHHCC
Confidence 11133 3444443 22211 1111 00 002347899999999999999988
No 72
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.11 E-value=1.6e-05 Score=68.98 Aligned_cols=116 Identities=23% Similarity=0.332 Sum_probs=66.7
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCC--CCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEA--DYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~--~~~~~~f~~~a~~ 75 (269)
.|++|||||+++..+...+ +..+|+.|.+.-+- |.-.+.. .. ++.+ .++-.+-...+..
T Consensus 21 aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~--------p~~~~~~-------~~-~~~~~~~~~~~~a~~~~~~ 84 (199)
T PF06414_consen 21 AGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH--------PDYDELL-------KA-DPDEASELTQKEASRLAEK 84 (199)
T ss_dssp ES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS--------TTHHHHH-------HH-HCCCTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc--------cchhhhh-------hh-hhhhhHHHHHHHHHHHHHH
Confidence 4999999999999999987 56789999976332 2222221 11 2222 2233333345555
Q ss_pred HHHHHHhcCCceEEEcccHH---HHHHHHcchhhhhc-cccceEEEEEeCCHHHHHHHHHHHHHHH
Q 044048 76 AIDKIIENGHLPIIVGGSNT---YIEALVEDSIINFR-ANYDCCFIWMDVDPLVLYKYVGIRVDKM 137 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~---Y~~~ll~g~~~~~~-~~~~~~~~~l~~~~e~L~~Ri~~Rv~~M 137 (269)
+++.+.+++. .|++-||.. ++..++. .++ ..|.+.++++.+|++.-..|+..|+.+=
T Consensus 85 ~~~~a~~~~~-nii~E~tl~~~~~~~~~~~----~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~ 145 (199)
T PF06414_consen 85 LIEYAIENRY-NIIFEGTLSNPSKLRKLIR----EAKAAGYKVELYYVAVPPELSIERVRQRYEEG 145 (199)
T ss_dssp HHHHHHHCT---EEEE--TTSSHHHHHHHH----HHHCTT-EEEEEEE---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CEEEecCCCChhHHHHHHH----HHHcCCceEEEEEEECCHHHHHHHHHHHHHcc
Confidence 6666666666 677777743 4443443 222 3688899999999999999999998543
No 73
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.10 E-value=1.3e-06 Score=68.94 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=18.1
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|++||||||+|..|++.+
T Consensus 4 ~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 4 SGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999998
No 74
>PRK01184 hypothetical protein; Provisional
Probab=98.08 E-value=9e-06 Score=69.21 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=60.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCC-ccceecCCccccCCC-CHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSD-KIQVYKGLDIATNKV-TESERQGVPHHLLGFVDPEADYPVEEFCEHALRAID 78 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~D-s~QvYk~l~I~Takp-t~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~ 78 (269)
+||+||||||+|. +++++|.++|++| -+. +.+. ..+-| ..++....-..+ + +.+....+...+.+.|
T Consensus 7 ~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr--~~~~-~~~~~~~~~~~g~~~~~~---~---~~~~~~~~~~~~~~~i- 75 (184)
T PRK01184 7 VGMPGSGKGEFSK-IAREMGIPVVVMGDVIR--EEVK-KRGLEPTDENIGKVAIDL---R---KELGMDAVAKRTVPKI- 75 (184)
T ss_pred ECCCCCCHHHHHH-HHHHcCCcEEEhhHHHH--HHHH-HcCCCCCcHHHHHHHHHH---H---HHHChHHHHHHHHHHH-
Confidence 5999999999986 8999999999974 332 1110 00111 111111000000 0 1233333334443333
Q ss_pred HHHhcCCceEEEcccHH--HHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 79 KIIENGHLPIIVGGSNT--YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 79 ~i~~~~~~pIivGGt~~--Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.+.+...|++-|.-. .++.+-. .+ ...+.++++++|.+.+.+|+..|-
T Consensus 76 --~~~~~~~vvidg~r~~~e~~~~~~----~~--~~~~~~i~v~~~~~~~~~Rl~~R~ 125 (184)
T PRK01184 76 --REKGDEVVVIDGVRGDAEVEYFRK----EF--PEDFILIAIHAPPEVRFERLKKRG 125 (184)
T ss_pred --HhcCCCcEEEeCCCCHHHHHHHHH----hC--CcccEEEEEECCHHHHHHHHHHcC
Confidence 334444566666411 1222211 01 123578999999999999998873
No 75
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.06 E-value=1.5e-05 Score=77.86 Aligned_cols=129 Identities=13% Similarity=0.181 Sum_probs=75.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCe-eeeCCc-cceecCCccccCC-CCHhhhcCCCceecccC-CC-----CCCC---CHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGE-AINSDK-IQVYKGLDIATNK-VTESERQGVPHHLLGFV-DP-----EADY---PVEE 68 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e-iIs~Ds-~QvYk~l~I~Tak-pt~~e~~~v~hhl~~~~-~~-----~~~~---~~~~ 68 (269)
+|+||||||++|..||.+++.. ||+.|+ .++++++ |.... |+. ....|+-...+ ++ ...+ -...
T Consensus 261 ~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~-i~~e~~P~L---h~Sty~A~~~~~~~~~~~~~~~~~~~vi~G 336 (475)
T PRK12337 261 GGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM-VSKDLLPTL---HASTFNAWRALLPPGEGLPAEPTRAEVLRG 336 (475)
T ss_pred ECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh-cchhhccch---hhchhhHHhhccCcccccccccchHHHHHH
Confidence 5999999999999999999987 899999 6888886 21110 111 00111111111 11 1123 2566
Q ss_pred HHHHHHHH---HHH----HHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEE-eCCHHHHHHHHHHHHHHHH
Q 044048 69 FCEHALRA---IDK----IIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWM-DVDPLVLYKYVGIRVDKMV 138 (269)
Q Consensus 69 f~~~a~~~---i~~----i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l-~~~~e~L~~Ri~~Rv~~Ml 138 (269)
|.+.|... ++. ...+|. .||+-|.+++-..+-. .......++.|.+ -.+.+...+|...|...|-
T Consensus 337 f~~q~~~V~~gi~~vI~r~l~eG~-SvIIEGVHl~P~~i~~----~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~ 409 (475)
T PRK12337 337 FRDQVQQVAVGLGAIQERSAQEGT-SLVLEGVHLVPGYLRH----PYQAGALVVPMLVTLPDEALHRRRFELRDRETG 409 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-eEEEECCCCCHHHHHH----HHhcCCceEEEEEEECCHHHHHHHHHHHhhhcc
Confidence 77776665 433 345555 7777788765322221 1111223343444 4467788899999998763
No 76
>PRK14528 adenylate kinase; Provisional
Probab=98.05 E-value=8.9e-06 Score=70.09 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=27.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+|||||++|..||+.+|.++|++|.+
T Consensus 7 ~G~pGsGKtt~a~~la~~~~~~~is~~~~ 35 (186)
T PRK14528 7 MGPPGAGKGTQAKILCERLSIPQISTGDI 35 (186)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeeeCCHH
Confidence 59999999999999999999999999987
No 77
>PLN02200 adenylate kinase family protein
Probab=98.04 E-value=1.7e-05 Score=71.09 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=27.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+|||||++|..||+++|...|+++.+-
T Consensus 49 ~G~PGSGKsT~a~~La~~~g~~his~gdll 78 (234)
T PLN02200 49 LGGPGSGKGTQCEKIVETFGFKHLSAGDLL 78 (234)
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEEccHHH
Confidence 599999999999999999999999996653
No 78
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.03 E-value=2.3e-05 Score=67.28 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=29.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc--ceec
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI--QVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~--QvYk 33 (269)
+|+.|||||+++..|++..+..+|++|.+ ++|.
T Consensus 5 tG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~ 39 (188)
T TIGR00152 5 TGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVE 39 (188)
T ss_pred ECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHh
Confidence 59999999999999999877999999987 4554
No 79
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.01 E-value=2.5e-05 Score=67.68 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=26.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|+.|||||+++..|++ +|.++|++|.+
T Consensus 8 tG~~gsGKst~~~~l~~-~g~~~i~~D~~ 35 (194)
T PRK00081 8 TGGIGSGKSTVANLFAE-LGAPVIDADAI 35 (194)
T ss_pred ECCCCCCHHHHHHHHHH-cCCEEEEecHH
Confidence 59999999999999998 89999999985
No 80
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.01 E-value=2.6e-05 Score=68.34 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=26.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+|||||++|..||+.+|.++||++.+
T Consensus 6 ~G~pGsGKsT~a~~la~~~~~~~is~~dl 34 (215)
T PRK00279 6 LGPPGAGKGTQAKFIAEKYGIPHISTGDM 34 (215)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEECCcc
Confidence 59999999999999999999999998663
No 81
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.00 E-value=3.2e-05 Score=70.70 Aligned_cols=118 Identities=16% Similarity=0.134 Sum_probs=80.4
Q ss_pred CCCCcCchhHHHHHHHHHcC-------CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-------GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-------~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a 73 (269)
.||.|+||||+|.-|+..+. ..+|..|.+..+... ++ +|-+.+.....+.|++..|.+..
T Consensus 88 aGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~--------L~-----~~glm~rKGfPeSyD~~~ll~fl 154 (283)
T COG1072 88 AGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAV--------LD-----ERGLMARKGFPESYDVAALLRFL 154 (283)
T ss_pred ccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhH--------hh-----hccccccCCCCccccHHHHHHHH
Confidence 59999999999999988763 579999999976653 22 55689999999999999998876
Q ss_pred HHHHHHH----------------------HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHH
Q 044048 74 LRAIDKI----------------------IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVG 131 (269)
Q Consensus 74 ~~~i~~i----------------------~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~ 131 (269)
....... ...-++.|+. |.|+ |+++.+..+-..+--..+|++++.+.|++|..
T Consensus 155 ~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~E---G~nv--Lq~~~p~~~~sdffDfSIyvDa~~~~le~wyi 229 (283)
T COG1072 155 SDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVE---GNNV--LQDGEPWLFLSDFFDFSIYVDADEELLEERYI 229 (283)
T ss_pred HHHhcCCCccccccccccccccCCCceeecCCCCEEEEe---chhh--hcCCCccccccccceEEEEecCCHHHHHHHHH
Confidence 6544210 0111222222 2333 44443222222233367899999999999999
Q ss_pred HHHHH
Q 044048 132 IRVDK 136 (269)
Q Consensus 132 ~Rv~~ 136 (269)
+|.-.
T Consensus 230 ~Rfl~ 234 (283)
T COG1072 230 ERFLK 234 (283)
T ss_pred HHHHh
Confidence 99833
No 82
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.00 E-value=4.6e-05 Score=66.61 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=65.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCe-eeeCCcccee-cCCccccCCCCHhhhcCCCceecccCCCCC-CCCHHHHHHHHHH--
Q 044048 1 MGATATGKTKLSIDLAIHFSGE-AINSDKIQVY-KGLDIATNKVTESERQGVPHHLLGFVDPEA-DYPVEEFCEHALR-- 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e-iIs~Ds~QvY-k~l~I~Takpt~~e~~~v~hhl~~~~~~~~-~~~~~~f~~~a~~-- 75 (269)
.|++|||||++|..||.+++.. +++.|.+.=. ++. +..+ |.+..- -++--..+++.. +.-+..|...+..
T Consensus 9 ~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~-~~~~-p~l~~s---~~~a~~~~~~~~~~~~~~~y~~q~~~v~ 83 (197)
T PRK12339 9 GGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPY-VDDE-PVLAKS---VYDAWEFYGSMTDENIVKGYLDQARAIM 83 (197)
T ss_pred ECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHh-cCCC-CCcccc---cHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 4999999999999999999875 6777765411 111 1221 222100 000001122221 2334555555442
Q ss_pred -----HHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEe-CCHHHHHHHHHHHHHH
Q 044048 76 -----AIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMD-VDPLVLYKYVGIRVDK 136 (269)
Q Consensus 76 -----~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~-~~~e~L~~Ri~~Rv~~ 136 (269)
.++.+...|. |+++-|+.+.-.-+ .. . . .....++++. .+.+.+.+|+..|...
T Consensus 84 ~~L~~va~~~l~~G~-sVIvEgv~l~p~~~-~~---~-~-~~~v~~i~l~v~d~e~lr~Rl~~R~~~ 143 (197)
T PRK12339 84 PGINRVIRRALLNGE-DLVIESLYFHPPMI-DE---N-R-TNNIRAFYLYIRDAELHRSRLADRINY 143 (197)
T ss_pred HHHHHHHHHHHHcCC-CEEEEecCcCHHHH-HH---H-H-hcCeEEEEEEeCCHHHHHHHHHHHhhc
Confidence 3344556666 66666675532221 10 0 0 1123344443 4788999999999943
No 83
>PRK14527 adenylate kinase; Provisional
Probab=97.99 E-value=1.3e-05 Score=68.95 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=27.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+|||||++|..||++++.+.++.|.+
T Consensus 12 ~G~pGsGKsT~a~~La~~~~~~~is~gd~ 40 (191)
T PRK14527 12 LGPPGAGKGTQAERLAQELGLKKLSTGDI 40 (191)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCccHH
Confidence 59999999999999999999999998765
No 84
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.98 E-value=2.5e-05 Score=65.70 Aligned_cols=97 Identities=22% Similarity=0.307 Sum_probs=57.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc----eecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHH-HHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ----VYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCE-HALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q----vYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~-~a~~ 75 (269)
.|++|+|||+|+.+||+.++.+.|++-..- +|-|. +++|.-.-+-+ ....
T Consensus 13 tGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gy-------------------------DE~y~c~i~DEdkv~D 67 (176)
T KOG3347|consen 13 TGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGY-------------------------DEEYKCHILDEDKVLD 67 (176)
T ss_pred eCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcc-------------------------cccccCccccHHHHHH
Confidence 499999999999999999999999865432 22222 11222211111 1223
Q ss_pred HHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 76 AIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.++.....|...|=-=|.++ |..++--+++.|.+|.++||.||..|.
T Consensus 68 ~Le~~m~~Gg~IVDyHgCd~------------FperwfdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 68 ELEPLMIEGGNIVDYHGCDF------------FPERWFDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred HHHHHHhcCCcEEeecccCc------------cchhheeEEEEEecCchHHHHHHHHcC
Confidence 33333333443333333333 122333377889999999999999994
No 85
>PTZ00301 uridine kinase; Provisional
Probab=97.98 E-value=2.6e-05 Score=68.89 Aligned_cols=114 Identities=21% Similarity=0.278 Sum_probs=62.3
Q ss_pred CCCCcCchhHHHHHHHHHcC-------CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-------GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-------~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a 73 (269)
.||+||||||||..|+++++ ..+++.|++ |+.-.. -| ..+.+ ..++-.| +.|+...|.+..
T Consensus 9 aG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y--y~~~~~---~~-~~~~~-----~~~~d~p-~a~D~~~l~~~l 76 (210)
T PTZ00301 9 SGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY--YRDQSN---IP-ESERA-----YTNYDHP-KSLEHDLLTTHL 76 (210)
T ss_pred ECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC--ccCccc---CC-HHHhc-----CCCCCCh-hhhCHHHHHHHH
Confidence 49999999999999988762 248888994 453211 11 11111 2233333 367888777766
Q ss_pred HHHHHH--H---------Hhc--------CCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 74 LRAIDK--I---------IEN--------GHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 74 ~~~i~~--i---------~~~--------~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
..+... + +.+ ..-.|||-|-..| .. ..+...++ +.+|+++|.++...|..+|-
T Consensus 77 ~~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l----~~---~~l~~l~D-~~ifvd~~~d~~~~Rr~~Rd 148 (210)
T PTZ00301 77 RELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLF----TN---AELRNEMD-CLIFVDTPLDICLIRRAKRD 148 (210)
T ss_pred HHHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhh----CC---HHHHHhCC-EEEEEeCChhHHHHHHHhhh
Confidence 443321 0 000 0112333333221 11 11222344 45999999998888777774
No 86
>PRK08356 hypothetical protein; Provisional
Probab=97.94 E-value=4.9e-05 Score=65.68 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=24.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..|+ .+|..+|++..+
T Consensus 11 ~G~~gsGK~t~a~~l~-~~g~~~is~~~~ 38 (195)
T PRK08356 11 VGKIAAGKTTVAKFFE-EKGFCRVSCSDP 38 (195)
T ss_pred ECCCCCCHHHHHHHHH-HCCCcEEeCCCc
Confidence 5999999999999996 589999997764
No 87
>PRK02496 adk adenylate kinase; Provisional
Probab=97.93 E-value=2.6e-05 Score=66.43 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=27.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+|||||++|..||+.+|..+|++|.+
T Consensus 7 ~G~pGsGKst~a~~la~~~~~~~i~~~~~ 35 (184)
T PRK02496 7 LGPPGAGKGTQAVVLAEHLHIPHISTGDI 35 (184)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEEhHHH
Confidence 59999999999999999999999999765
No 88
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.90 E-value=4.6e-05 Score=68.16 Aligned_cols=117 Identities=17% Similarity=0.105 Sum_probs=64.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceec-CCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYK-GLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk-~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+||+||||||+|..||+++|..+||.|.+- + .+.-.| +.-.+. -.+++.....+-........+.+..
T Consensus 12 ~G~PGsGK~T~a~~La~~~g~~~is~gdll--r~~~~~~t--~lg~~i-------~~~~~~G~lvpd~iv~~lv~~~l~~ 80 (229)
T PTZ00088 12 FGAPGVGKGTFAEILSKKENLKHINMGNIL--REEIKAKT--TIGKEI-------QKVVTSGNLVPDNLVIAIVKDEIAK 80 (229)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEECChHH--HHHhhcCC--hHHHHH-------HHHHHcCCcCCHHHHHHHHHHHHHh
Confidence 599999999999999999999999999965 3 221111 111111 1122222223333444455555544
Q ss_pred HHhcCCceEEEccc-HHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 80 IIENGHLPIIVGGS-NTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 80 i~~~~~~pIivGGt-~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
+.......++..|. -..-++.... .+ .-...+++|+++.+.+.+|+..|
T Consensus 81 ~~~~~~~g~iLDGfPRt~~Qa~~l~---~~--~~~~~vi~l~~~~~~~~~Rl~~R 130 (229)
T PTZ00088 81 VTDDCFKGFILDGFPRNLKQCKELG---KI--TNIDLFVNIYLPRNILIKKLLGR 130 (229)
T ss_pred hccccCceEEEecCCCCHHHHHHHH---hc--CCCCEEEEEeCCHHHHHHHHHcC
Confidence 32222223344333 2222222211 00 11236789999999999998877
No 89
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.88 E-value=9.8e-05 Score=61.35 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=57.1
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
+|++|||||+||..|++.+ + ..+++.|.+. +.+. ++ .. .++. +..+..+....
T Consensus 5 ~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r--~~l~---------------~~-~~-~~~~---~~~~~~~~~~~ 62 (149)
T cd02027 5 TGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR--HGLN---------------KD-LG-FSRE---DREENIRRIAE 62 (149)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH--Hhhh---------------hc-cC-CCcc---hHHHHHHHHHH
Confidence 4999999999999999998 4 3456666654 2210 00 00 0111 11222222233
Q ss_pred HHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHH
Q 044048 76 AIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYV 130 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri 130 (269)
....+.+.|. .||+..+..+-..- .. -..+....++.++|+++|.+++.+|.
T Consensus 63 ~a~~l~~~G~-~VIid~~~~~~~~R-~~-~~~l~~~~~~~~i~l~~~~e~~~~R~ 114 (149)
T cd02027 63 VAKLLADAGL-IVIAAFISPYREDR-EA-ARKIIGGGDFLEVFVDTPLEVCEQRD 114 (149)
T ss_pred HHHHHHhCCC-EEEEccCCCCHHHH-HH-HHHhcCCCCEEEEEEeCCHHHHHHhC
Confidence 3334445665 55665654331110 00 00111146789999999999998884
No 90
>PLN02772 guanylate kinase
Probab=97.87 E-value=1.2e-05 Score=77.03 Aligned_cols=114 Identities=21% Similarity=0.253 Sum_probs=72.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHH---------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCE--------- 71 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~--------- 71 (269)
+||+|||||+|...|.+.++.. +..-..-+|.+|.+.|..|+.+|+++.-........+.|.+
T Consensus 141 sGPSGvGKsTL~~~L~~~~p~~--------~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~Y 212 (398)
T PLN02772 141 SGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLY 212 (398)
T ss_pred ECCCCCCHHHHHHHHhhhcccc--------ccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccc
Confidence 5999999999999999876432 11233568999999999998888875322222222222222
Q ss_pred -HHHHHHHHHHhcCCceEEE---cccHHHHHHHHcchhhhhccccceEEEE-EeCCHHHHHHHHHHH
Q 044048 72 -HALRAIDKIIENGHLPIIV---GGSNTYIEALVEDSIINFRANYDCCFIW-MDVDPLVLYKYVGIR 133 (269)
Q Consensus 72 -~a~~~i~~i~~~~~~pIiv---GGt~~Y~~~ll~g~~~~~~~~~~~~~~~-l~~~~e~L~~Ri~~R 133 (269)
-..+.++.+.+.|+.+|+. -|.-. +.. ..+...+++ +.++.++|.+||..|
T Consensus 213 GTsk~~V~~vl~~Gk~vILdLD~qGar~----Lr~-------~~l~~v~IFI~PPSlEeLe~RL~~R 268 (398)
T PLN02772 213 GTSIEAVEVVTDSGKRCILDIDVQGARS----VRA-------SSLEAIFIFICPPSMEELEKRLRAR 268 (398)
T ss_pred cccHHHHHHHHHhCCcEEEeCCHHHHHH----HHH-------hcCCeEEEEEeCCCHHHHHHHHHhc
Confidence 2456777888889888865 11111 111 012334444 456789999999888
No 91
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.86 E-value=0.00011 Score=62.09 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=55.3
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
+|+.|||||++|..||..+. ..+|+.|.+. +.+..+. .+ .+ +-....+...+ .
T Consensus 10 ~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~--~~~~~~~----------------~~-~~--~~r~~~~~~~~-~ 67 (175)
T PRK00889 10 TGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR--TNLSKGL----------------GF-SK--EDRDTNIRRIG-F 67 (175)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH--HHHhcCC----------------CC-Ch--hhHHHHHHHHH-H
Confidence 59999999999999999873 4567888653 3322111 00 00 00112222222 1
Q ss_pred HHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHH
Q 044048 76 AIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYV 130 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri 130 (269)
....+...|. .|+++++..|- ....-. . .....+.++||++|.+++.+|.
T Consensus 68 ~a~~~~~~g~-~vi~~~~~~~~-~~~~~l-~--~~~~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 68 VANLLTRHGV-IVLVSAISPYR-ETREEV-R--ANIGNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHHHHHhCCC-EEEEecCCCCH-HHHHHH-H--hhcCCeEEEEEcCCHHHHHHhC
Confidence 2222334555 45665554332 111100 0 0113567899999999999994
No 92
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.86 E-value=5.6e-05 Score=64.80 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.4
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCccceec
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDKIQVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~QvYk 33 (269)
.|++|||||+||..|++.+ +..+|+.|.+..+.
T Consensus 5 ~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 5 AGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 4999999999999999996 45799999977554
No 93
>COG0645 Predicted kinase [General function prediction only]
Probab=97.83 E-value=9.6e-05 Score=63.11 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCC---ccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGL---DIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAI 77 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l---~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i 77 (269)
.|-.|||||++|..|++.+++..|..|-+. |.| +.-|..| -+.+++ ..+...|..+-..+.
T Consensus 7 ~Gl~GsGKstlA~~l~~~lgA~~lrsD~ir--k~L~g~p~~~r~~------------~g~ys~--~~~~~vy~~l~~~A~ 70 (170)
T COG0645 7 GGLPGSGKSTLARGLAELLGAIRLRSDVIR--KRLFGVPEETRGP------------AGLYSP--AATAAVYDELLGRAE 70 (170)
T ss_pred ecCCCccHhHHHHHHHhhcCceEEehHHHH--HHhcCCcccccCC------------CCCCcH--HHHHHHHHHHHHHHH
Confidence 478999999999999999999999999866 543 2222221 122222 346666766554443
Q ss_pred HHHHhcCCceEEEcccHHHHHHHHcchhh------hhccccceEEEEEeCCHHHHHHHHHHHHH
Q 044048 78 DKIIENGHLPIIVGGSNTYIEALVEDSII------NFRANYDCCFIWMDVDPLVLYKYVGIRVD 135 (269)
Q Consensus 78 ~~i~~~~~~pIivGGt~~Y~~~ll~g~~~------~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~ 135 (269)
.+.+.|. +||..++. ...... .-.....+..+++.++.+++.+|+..|..
T Consensus 71 -l~l~~G~-~VVlDa~~------~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 71 -LLLSSGH-SVVLDATF------DRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred -HHHhCCC-cEEEeccc------CCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 4557777 55555551 111100 00123467889999999999999999963
No 94
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.83 E-value=0.00011 Score=72.99 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=30.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGL 35 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l 35 (269)
.||+|||||++|..||+++|..+++.|+ +||.+
T Consensus 290 ~G~sgsGKst~a~~la~~l~~~~~d~g~--~YR~~ 322 (512)
T PRK13477 290 DGPAGAGKSTVTRAVAKKLGLLYLDTGA--MYRAV 322 (512)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEecCCc--eehHH
Confidence 4999999999999999999999999997 58975
No 95
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.81 E-value=9.7e-05 Score=64.25 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=26.2
Q ss_pred CCCCcCchhHHHHHHHHHcC---CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS---GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~---~eiIs~Ds~Q 30 (269)
+||+|||||||+..|++.++ ..+|+.|.+-
T Consensus 12 ~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~ 44 (209)
T PRK05480 12 AGGSGSGKTTVASTIYEELGDESIAVIPQDSYY 44 (209)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence 59999999999999999984 4689999864
No 96
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.81 E-value=8.4e-05 Score=64.01 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=27.2
Q ss_pred CCCCcCchhHHHHHHHHHcC---CeeeeCCccceecCC
Q 044048 1 MGATATGKTKLSIDLAIHFS---GEAINSDKIQVYKGL 35 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~---~eiIs~Ds~QvYk~l 35 (269)
+||+||||||||..|+..++ ..+++.|. .|+.+
T Consensus 5 ~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~--~~~~~ 40 (198)
T cd02023 5 AGGSGSGKTTVAEEIIEQLGNPKVVIISQDS--YYKDL 40 (198)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCeEEEEecc--ccccc
Confidence 49999999999999999873 57999996 34443
No 97
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.81 E-value=8.6e-05 Score=68.73 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=67.8
Q ss_pred CCCCcCchhHHHHHHHHHcC-------CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-------GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-------~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a 73 (269)
+||+||||||++..|+..+. ..+|+.|... .. .+++.. +.+....+..+.|++..+.+..
T Consensus 68 aG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~--~~---------~~~l~~--~g~~~~~g~P~s~D~~~l~~~L 134 (290)
T TIGR00554 68 AGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL--HP---------NQVLKE--RNLMKKKGFPESYDMHRLVKFL 134 (290)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc--cc---------HHHHHH--cCCccccCCChhccHHHHHHHH
Confidence 59999999999987765552 4578999955 22 222221 1123334445678888877665
Q ss_pred HHHHHH---H---------Hh--cC-------CceEEEcccHHHH-HHH-Hcchhhhh-ccccceEEEEEeCCHHHHHHH
Q 044048 74 LRAIDK---I---------IE--NG-------HLPIIVGGSNTYI-EAL-VEDSIINF-RANYDCCFIWMDVDPLVLYKY 129 (269)
Q Consensus 74 ~~~i~~---i---------~~--~~-------~~pIivGGt~~Y~-~~l-l~g~~~~~-~~~~~~~~~~l~~~~e~L~~R 129 (269)
...... + ++ .+ .-.||+-|-.... ..+ +++.+..+ +..++ ..||+++|.+.+.+|
T Consensus 135 ~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D-~~IyvDa~~d~~~~w 213 (290)
T TIGR00554 135 SDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVD-FSIYVDAEEDLLQTW 213 (290)
T ss_pred HHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCC-EEEEEECCHHHHHHH
Confidence 443321 0 00 01 1123333432210 000 11111111 12233 678999999999999
Q ss_pred HHHHHHHHHH
Q 044048 130 VGIRVDKMVE 139 (269)
Q Consensus 130 i~~Rv~~Ml~ 139 (269)
.-+|...+.+
T Consensus 214 ~i~R~~~l~~ 223 (290)
T TIGR00554 214 YINRFLKFRE 223 (290)
T ss_pred HHHHHHHHHH
Confidence 9999865543
No 98
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.79 E-value=0.00011 Score=62.75 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=26.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|+.|||||+++..|++ +|.++|++|.+
T Consensus 5 tG~~gsGKst~~~~l~~-~g~~~i~~D~~ 32 (179)
T cd02022 5 TGGIGSGKSTVAKLLKE-LGIPVIDADKI 32 (179)
T ss_pred ECCCCCCHHHHHHHHHH-CCCCEEecCHH
Confidence 59999999999999999 89999999975
No 99
>PRK06696 uridine kinase; Validated
Probab=97.76 E-value=0.00012 Score=64.70 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=25.2
Q ss_pred CCCCcCchhHHHHHHHHHc---CCe--eeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHF---SGE--AINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~e--iIs~Ds~Qv 31 (269)
.|++||||||||..|++.+ |.. +++.|.+-.
T Consensus 28 ~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 28 DGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 4999999999999999999 334 456998653
No 100
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.76 E-value=4.3e-05 Score=67.02 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=25.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
+|+.|||||+++..|+. +|+.++++|.
T Consensus 11 tG~igsGKSt~~~~l~~-~g~~v~d~D~ 37 (208)
T PRK14731 11 TGGIGSGKSTVCRFLAE-MGCELFEADR 37 (208)
T ss_pred ECCCCCCHHHHHHHHHH-CCCeEEeccH
Confidence 59999999999999996 8999999994
No 101
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.75 E-value=0.00017 Score=64.11 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=33.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCe---eeeCCccceecCCccccCCCCHhhhc
Q 044048 1 MGATATGKTKLSIDLAIHFSGE---AINSDKIQVYKGLDIATNKVTESERQ 48 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e---iIs~Ds~QvYk~l~I~Takpt~~e~~ 48 (269)
.|++||||||+|..|+..++.+ +|+-|+. |+. ..+.+.+|+.
T Consensus 14 aG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y--Yk~----~~~~~~~~~~ 58 (218)
T COG0572 14 AGGSGSGKTTVAKELSEQLGVEKVVVISLDDY--YKD----QSHLPFEERN 58 (218)
T ss_pred eCCCCCCHHHHHHHHHHHhCcCcceEeecccc--ccc----hhhcCHhhcC
Confidence 4999999999999999999977 9999995 453 3344455555
No 102
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.74 E-value=8.6e-05 Score=62.88 Aligned_cols=134 Identities=16% Similarity=0.272 Sum_probs=81.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|+.||||||++..|+++++.++|.+|.++-=.+.+-.| +|+|----| .+. |.......+..-
T Consensus 18 mGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~--------~GipLnD~D------R~p---WL~~i~~~~~~~ 80 (191)
T KOG3354|consen 18 MGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMT--------QGIPLNDDD------RWP---WLKKIAVELRKA 80 (191)
T ss_pred EecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHh--------cCCCCCccc------ccH---HHHHHHHHHHHH
Confidence 599999999999999999999999999988444432222 344422111 222 222222222222
Q ss_pred HhcCCceEEEcccHHH--HHHHHcchhh---h-hccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCC
Q 044048 81 IENGHLPIIVGGSNTY--IEALVEDSII---N-FRANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDP 152 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y--~~~ll~g~~~---~-~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~ 152 (269)
...|+. +|+..|.+- ++.++.+... + -.+.....|++|..+.|++-+|+.+|-...+..-|++---+.++.
T Consensus 81 l~~~q~-vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf~~LE~ 157 (191)
T KOG3354|consen 81 LASGQG-VVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLESQFATLEA 157 (191)
T ss_pred hhcCCe-EEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHHHHHHhccC
Confidence 234553 344455542 3344433100 0 011245678899999999999999998777777777776666654
No 103
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.71 E-value=0.00019 Score=63.68 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=70.2
Q ss_pred CCCCcCchhHHHHHHHHHcC---Ce--e-eeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS---GE--A-INSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHAL 74 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~---~e--i-Is~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~ 74 (269)
.||+|||||||+..|+..+. +. | |+.|...... ..+... ..+...+..+.|+...+.+...
T Consensus 39 ~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~-----------~~~~~~--g~~~~~~~~~~~d~~~~~~~l~ 105 (229)
T PRK09270 39 AGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDN-----------AVLDAH--GLRPRKGAPETFDVAGLAALLR 105 (229)
T ss_pred ECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCH-----------HHHHhc--ccccccCCCCCCCHHHHHHHHH
Confidence 49999999999999998874 32 4 8888743211 111111 1122222334677777765543
Q ss_pred HHHHHH-------Hh--------------cCCceEEEcccHHHHHHHHcchh-hhhccccceEEEEEeCCHHHHHHHHHH
Q 044048 75 RAIDKI-------IE--------------NGHLPIIVGGSNTYIEALVEDSI-INFRANYDCCFIWMDVDPLVLYKYVGI 132 (269)
Q Consensus 75 ~~i~~i-------~~--------------~~~~pIivGGt~~Y~~~ll~g~~-~~~~~~~~~~~~~l~~~~e~L~~Ri~~ 132 (269)
.....- .+ .....|++-|.+..+ .+.. ..+...++ .++|+++|.+...+|+.+
T Consensus 106 ~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~----~~~~~~~l~~~~D-~vi~v~~~~~~~~~R~~~ 180 (229)
T PRK09270 106 RLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLL----DEEPWRRLAGLFD-FTIFLDAPAEVLRERLVA 180 (229)
T ss_pred HHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceee----ccccHHHHHhhCC-EEEEEECCHHHHHHHHHH
Confidence 332110 00 011223333433211 1100 01111223 779999999999999999
Q ss_pred HHHHHHHcCcH-HHHHhhcC
Q 044048 133 RVDKMVETGLV-DEVRDMFD 151 (269)
Q Consensus 133 Rv~~Ml~~Gll-~Ev~~l~~ 151 (269)
|. ...|+- +|+...+.
T Consensus 181 R~---~~~g~s~~~~~~~~~ 197 (229)
T PRK09270 181 RK---LAGGLSPEAAEAFVL 197 (229)
T ss_pred HH---HhcCCCHHHHHHHHH
Confidence 94 356764 55766664
No 104
>PRK07667 uridine kinase; Provisional
Probab=97.68 E-value=1.9e-05 Score=68.30 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=25.3
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~ 29 (269)
.|++|||||++|..|++.++ ..+|+.|++
T Consensus 23 ~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 23 DGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 49999999999999999874 459999985
No 105
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.65 E-value=0.00022 Score=62.12 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=25.4
Q ss_pred CCCCcCchhHHHHHHHHHcC---CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFS---GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~---~eiIs~Ds~ 29 (269)
+||+|||||||+..|+..++ ..+|+.|..
T Consensus 12 ~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 12 GGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred ECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 59999999999999999876 468888885
No 106
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.62 E-value=4.2e-05 Score=66.02 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.3
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||+||||||||..|+..++.
T Consensus 5 ~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 5 AGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EESTTSSHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHhCc
Confidence 499999999999999999973
No 107
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.61 E-value=0.00013 Score=64.97 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=27.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
.||+|||||++|..||+.+|.++++.|.+
T Consensus 10 ~g~~gsGksti~~~la~~~~~~~~~~~~~ 38 (225)
T PRK00023 10 DGPAGSGKGTVAKILAKKLGFHYLDTGAM 38 (225)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcccCchh
Confidence 49999999999999999999999999984
No 108
>PRK04040 adenylate kinase; Provisional
Probab=97.61 E-value=0.00029 Score=61.01 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=26.4
Q ss_pred CCCCcCchhHHHHHHHHHc--CCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF--SGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~--~~eiIs~Ds~ 29 (269)
+|++||||||++..|++.+ +..+++.|++
T Consensus 8 ~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 8 TGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred EeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 5999999999999999999 7889988884
No 109
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.60 E-value=0.00014 Score=60.06 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=27.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+|||||++|..||+++|...||+..+-
T Consensus 2 ~G~PgsGK~t~~~~la~~~~~~~is~~~ll 31 (151)
T PF00406_consen 2 LGPPGSGKGTQAKRLAKRYGLVHISVGDLL 31 (151)
T ss_dssp EESTTSSHHHHHHHHHHHHTSEEEEHHHHH
T ss_pred cCCCCCChHHHHHHHHHhcCcceechHHHH
Confidence 599999999999999999999999987654
No 110
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.59 E-value=0.00015 Score=63.35 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=27.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc--ceec
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI--QVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~--QvYk 33 (269)
+|+.|||||+++..|+. +|..+|++|.+ ++|.
T Consensus 7 tG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~ 40 (200)
T PRK14734 7 TGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVE 40 (200)
T ss_pred ECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHh
Confidence 59999999999999997 79999999985 4554
No 111
>PRK13808 adenylate kinase; Provisional
Probab=97.58 E-value=0.00019 Score=67.69 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=27.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+|||||+++..||+.+|..+||+|.+-
T Consensus 6 ~GpPGSGK~T~a~~LA~~ygl~~is~gdlL 35 (333)
T PRK13808 6 LGPPGAGKGTQAQRLVQQYGIVQLSTGDML 35 (333)
T ss_pred ECCCCCCHHHHHHHHHHHhCCceecccHHH
Confidence 599999999999999999999999998765
No 112
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.002 Score=58.66 Aligned_cols=179 Identities=20% Similarity=0.276 Sum_probs=91.3
Q ss_pred CCCcCchhHHHHHHHHHcCC-eeeeCCccce-ecCCcccc--CCCCHhhhcCCCce-ecccCCCCC-CCCHHHHHHHHHH
Q 044048 2 GATATGKTKLSIDLAIHFSG-EAINSDKIQV-YKGLDIAT--NKVTESERQGVPHH-LLGFVDPEA-DYPVEEFCEHALR 75 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~-eiIs~Ds~Qv-Yk~l~I~T--akpt~~e~~~v~hh-l~~~~~~~~-~~~~~~f~~~a~~ 75 (269)
|++|+|||++|-+||.++|. .+|+.|++.- -|. +.+ --||..+-. +- +--..+++. +-=.+.|.+.|..
T Consensus 96 GasGVGkStIA~ElA~rLgI~~visTD~IREvlR~--ii~~~l~PtLh~Ss---y~Awkalr~~~~~~piiaGF~dqa~~ 170 (299)
T COG2074 96 GASGVGKSTIAGELARRLGIRSVISTDSIREVLRK--IISPELLPTLHTSS---YDAWKALRDPTDENPIIAGFEDQASA 170 (299)
T ss_pred CCCCCChhHHHHHHHHHcCCceeecchHHHHHHHH--hCCHHhcchhhHhH---HHHHHHhcCCCCCcchhhhHHHHhHH
Confidence 89999999999999999997 5899999751 122 222 112211100 00 111223332 1135667776654
Q ss_pred H-------HHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccc-eEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHH
Q 044048 76 A-------IDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYD-CCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVR 147 (269)
Q Consensus 76 ~-------i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~-~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~ 147 (269)
. |+.....|.-.|+. |.++ +=.+++. ..+ ..+ +.++..-.+++..+.|..+|...+-..+-..--.
T Consensus 171 V~~GI~~VI~RAi~eG~~lIIE-GvHl-VPg~i~~--~~~--~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~~Ryl 244 (299)
T COG2074 171 VMVGIEAVIERAIEEGEDLIIE-GVHL-VPGLIKE--EAL--GNNVFMFMLYIADEELHRERFYDRIRYTHASRPGGRYL 244 (299)
T ss_pred HHHHHHHHHHHHHhcCcceEEE-eeee-ccccccH--hhh--ccceEEEEEEeCCHHHHHHHHHHHHHHHhccCchhHHH
Confidence 3 22233344433333 3321 0001110 011 122 3334446678888999999998886655443333
Q ss_pred hhcCCCCCcccccccccCHHHHHHHHhccc---CccccccccchHHHHHHHHHHHHHHHHH
Q 044048 148 DMFDPNADYNRGIRRSIGAPELHEYLKLES---NVKNETTNNNKDLLLKKAIQEIKDNTCK 205 (269)
Q Consensus 148 ~l~~~~~~~~~~~~qaIGykE~~~yl~~~~---~~d~~~~~~~~~~~~~~~ie~ik~~Trq 205 (269)
.-|.. |+.+.+|+.... +.+- .++..-++....+++.+...|-+
T Consensus 245 ~yf~E-------------iR~I~Dyl~~~Are~gVPv-I~n~di~etv~~il~~i~~~~~r 291 (299)
T COG2074 245 EYFKE-------------IRTIHDYLVERAREHGVPV-IENDDIDETVDRILEDIRKRTVR 291 (299)
T ss_pred HHHHH-------------HHHHHHHHHHHHHhcCCCe-eccccHHHHHHHHHHHHHHHHHH
Confidence 33323 678888875321 1110 11223445556666666555533
No 113
>PRK05439 pantothenate kinase; Provisional
Probab=97.56 E-value=0.00032 Score=65.56 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=67.0
Q ss_pred CCCCcCchhHHHHHHHHHcC-------CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-------GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-------~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a 73 (269)
.||+||||||+|..|+..++ ..+|+.|++. +. .+++. .|.+++..+..+.|+...+.+..
T Consensus 92 aG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy--~~---------~~~l~--~~~l~~~kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 92 AGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL--YP---------NAVLE--ERGLMKRKGFPESYDMRALLRFL 158 (311)
T ss_pred ECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc--cC---------HHHHh--hhhccccCCCcccccHHHHHHHH
Confidence 49999999999999998653 4699999975 32 11221 23355545555578887776554
Q ss_pred HHHHHH---H---------Hh---------cCCceEEEcccHHH-HHHHHcchhhhhccccceEEEEEeCCHHHHHHHHH
Q 044048 74 LRAIDK---I---------IE---------NGHLPIIVGGSNTY-IEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVG 131 (269)
Q Consensus 74 ~~~i~~---i---------~~---------~~~~pIivGGt~~Y-~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~ 131 (269)
...... + .+ ...-.|||-|-..+ .... + ....+..-++ ..+|+++|.+.+.+|.-
T Consensus 159 ~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~-~-~~~~l~d~~D-~~IfVda~~~~~~~w~i 235 (311)
T PRK05439 159 SDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQN-H-HRLFVSDFFD-FSIYVDADEDLIEKWYI 235 (311)
T ss_pred HHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCccc-c-cchhhHHhCC-EEEEEECCHHHHHHHHH
Confidence 433321 0 00 00111333333221 1110 0 0000111122 66899999999999999
Q ss_pred HHHHH
Q 044048 132 IRVDK 136 (269)
Q Consensus 132 ~Rv~~ 136 (269)
+|.-.
T Consensus 236 ~R~~~ 240 (311)
T PRK05439 236 ERFLK 240 (311)
T ss_pred HHHHH
Confidence 99754
No 114
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.56 E-value=0.00061 Score=58.05 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=56.6
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHH---HHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEF---CEH 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f---~~~ 72 (269)
+|++|||||++|..|+..+. ..+++.|.+. +.+. .+..|+..+- ...
T Consensus 24 ~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r--~~l~-----------------------~~~~~~~~~~~~~~~~ 78 (184)
T TIGR00455 24 TGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR--HGLN-----------------------KDLGFSEEDRKENIRR 78 (184)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH--hhhc-----------------------cccCCCHHHHHHHHHH
Confidence 59999999999999999872 3456666543 2221 0011222221 122
Q ss_pred HHHHHHHHHhcCCceEEEcccHHHH--HHHHcchhhhhccccceEEEEEeCCHHHHHHHH
Q 044048 73 ALRAIDKIIENGHLPIIVGGSNTYI--EALVEDSIINFRANYDCCFIWMDVDPLVLYKYV 130 (269)
Q Consensus 73 a~~~i~~i~~~~~~pIivGGt~~Y~--~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri 130 (269)
.......+...|. +||+..+..+- +..+. .......++++|+++|.+++.+|-
T Consensus 79 ~~~~~~~~~~~G~-~VI~d~~~~~~~~r~~~~----~~~~~~~~~~v~l~~~~e~~~~R~ 133 (184)
T TIGR00455 79 IGEVAKLFVRNGI-IVITSFISPYRADRQMVR----ELIEKGEFIEVFVDCPLEVCEQRD 133 (184)
T ss_pred HHHHHHHHHcCCC-EEEEecCCCCHHHHHHHH----HhCcCCCeEEEEEeCCHHHHHHhC
Confidence 2223344556665 55566675432 11111 111234678899999999998883
No 115
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.54 E-value=6.9e-05 Score=67.28 Aligned_cols=131 Identities=23% Similarity=0.344 Sum_probs=82.5
Q ss_pred CCCCcCchhHHHHHHHHHc-------CC------eeeeCCccceec-CCccccCCCCHhhhcCCCceecccCCCCCCCCH
Q 044048 1 MGATATGKTKLSIDLAIHF-------SG------EAINSDKIQVYK-GLDIATNKVTESERQGVPHHLLGFVDPEADYPV 66 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-------~~------eiIs~Ds~QvYk-~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~ 66 (269)
.|++|||||+++.+++++. +. .||.+|.++.|+ .||-.-+--+.-.++|.|- +|+.
T Consensus 125 ag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapw----------TFD~ 194 (323)
T KOG2702|consen 125 AGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPW----------TFDS 194 (323)
T ss_pred ecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCc----------ccCH
Confidence 5999999999999999853 22 358899999999 5666554444444454443 5889
Q ss_pred HHHHHHHHHHHH----H-------------------HHhcCCceEEEcccHHHHHHHHcchhhhhccccc--eEEEEEeC
Q 044048 67 EEFCEHALRAID----K-------------------IIENGHLPIIVGGSNTYIEALVEDSIINFRANYD--CCFIWMDV 121 (269)
Q Consensus 67 ~~f~~~a~~~i~----~-------------------i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~--~~~~~l~~ 121 (269)
.-|...+...-+ + +....++.|+.| .|+ |++.+ .|+.-+. -...++++
T Consensus 195 ~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EG---nYl--Ll~~~--~Wkdi~k~~d~k~~idV 267 (323)
T KOG2702|consen 195 NLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEG---NYL--LLDQE--NWKDIYKTLDDKYKIDV 267 (323)
T ss_pred HHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEec---cEE--EecCc--cHHHHHHHhhhheeccc
Confidence 999887654321 0 112334444443 344 44432 2221111 12367899
Q ss_pred CHHHHHHHHHHHHHHHHHcCcH---HHHHhhcC
Q 044048 122 DPLVLYKYVGIRVDKMVETGLV---DEVRDMFD 151 (269)
Q Consensus 122 ~~e~L~~Ri~~Rv~~Ml~~Gll---~Ev~~l~~ 151 (269)
+-+.-.+|+++|. +..||+ +|.++=++
T Consensus 268 ~~~~a~~RVa~RH---l~sGl~~t~~ea~er~d 297 (323)
T KOG2702|consen 268 DYEAAEERVAKRH---LQSGLVTTIAEARERFD 297 (323)
T ss_pred cHHHHHHHHHHHh---hcccccCCHHHHHhhcc
Confidence 9999999999998 889975 44444443
No 116
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00063 Score=60.34 Aligned_cols=110 Identities=18% Similarity=0.242 Sum_probs=62.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCe-----eeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGE-----AINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e-----iIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
.|++|||||++|.+||+.+.-+ .++.|-...|.. +|-.++.|. .| ..-|.+.+.+
T Consensus 7 TGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~----------DEslpi~ke---------~y-res~~ks~~r 66 (261)
T COG4088 7 TGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILW----------DESLPILKE---------VY-RESFLKSVER 66 (261)
T ss_pred ecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheec----------ccccchHHH---------HH-HHHHHHHHHH
Confidence 5999999999999999998543 233333333321 000011110 01 1123334444
Q ss_pred HHHHHHhcCCceEEEcccHHHHHHHHcchhh-hhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 76 AIDKIIENGHLPIIVGGSNTYIEALVEDSII-NFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~-~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.|....+ ..-|||..|++ ++++-..... +....-.+|+|++.+|.+.+.+|=..|
T Consensus 67 lldSalk--n~~VIvDdtNY-yksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er 122 (261)
T COG4088 67 LLDSALK--NYLVIVDDTNY-YKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER 122 (261)
T ss_pred HHHHHhc--ceEEEEecccH-HHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC
Confidence 5555443 44678888864 4555443211 112234689999999999988886555
No 117
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.50 E-value=0.00027 Score=60.59 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=19.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHH
Q 044048 113 DCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 113 ~~~~~~l~~~~e~L~~Ri~~R 133 (269)
+.++++|++|.+.+.+|+.+|
T Consensus 128 pd~~i~l~~~~~~~~~Rl~~R 148 (205)
T PRK00698 128 PDLTLYLDVPPEVGLARIRAR 148 (205)
T ss_pred CCEEEEEeCCHHHHHHHHHhc
Confidence 458899999999999999998
No 118
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.49 E-value=0.00052 Score=59.00 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=62.6
Q ss_pred CCCcCchhHHHHHHHHHcCCe--eeeCCccceecCCccccCCCCHhhhcCCCceecccC-CCCC---CCCHHHHHHHHHH
Q 044048 2 GATATGKTKLSIDLAIHFSGE--AINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFV-DPEA---DYPVEEFCEHALR 75 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~e--iIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~-~~~~---~~~~~~f~~~a~~ 75 (269)
||+.||||++|..|...+..+ .+++|++. +.|+=.... +..++. .++. .--...+......
T Consensus 8 G~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~--~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (174)
T PF07931_consen 8 GPSSSGKSSIARALQERLPEPWLHLSVDTFV--DMMPPGRYR-----------PGDGLEPAGDRPDGGPLFRRLYAAMHA 74 (174)
T ss_dssp E-TTSSHHHHHHHHHHHSSS-EEEEEHHHHH--HHS-GGGGT-----------STTSEEEETTSEEE-HHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCcCCeEEEecChHH--hhcCccccc-----------CCccccccccCCchhHHHHHHHHHHHH
Confidence 899999999999999999765 78889754 323211111 111110 0000 1112233444455
Q ss_pred HHHHHHhcCCceEEEcccH-------HHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHH
Q 044048 76 AIDKIIENGHLPIIVGGSN-------TYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDK 136 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~-------~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~ 136 (269)
.+....+.|. .|||.+-. -+++.+|. .+++.++.+.||.+++.+|=..|-|.
T Consensus 75 ~iaa~a~aG~-~VIvD~v~~~~~~l~d~l~~~L~--------~~~vl~VgV~Cpleil~~RE~~RgDR 133 (174)
T PF07931_consen 75 AIAAMARAGN-NVIVDDVFLGPRWLQDCLRRLLA--------GLPVLFVGVRCPLEILERRERARGDR 133 (174)
T ss_dssp HHHHHHHTT--EEEEEE--TTTHHHHHHHHHHHT--------TS-EEEEEEE--HHHHHHHHHHHTSS
T ss_pred HHHHHHhCCC-CEEEecCccCcHHHHHHHHHHhC--------CCceEEEEEECCHHHHHHHHHhcCCc
Confidence 6666655665 55554321 12223332 47889999999999999999999764
No 119
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.46 E-value=0.00051 Score=69.13 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCCCcCchhHHHHHHHHHcCC------eeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSG------EAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHAL 74 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~------eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~ 74 (269)
+|++||||||+|..||+.++. .++..|.+ -++|. ....|+..+=.....
T Consensus 398 ~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v--r~~l~-----------------------ge~~f~~~er~~~~~ 452 (568)
T PRK05537 398 TGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV--RKHLS-----------------------SELGFSKEDRDLNIL 452 (568)
T ss_pred ECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH--HHhcc-----------------------CCCCCCHHHHHHHHH
Confidence 599999999999999999985 67776755 34541 011344433222211
Q ss_pred ---HHHHHHHhcCCceEEEcccHHHHHHHHcchhhh-hccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhc
Q 044048 75 ---RAIDKIIENGHLPIIVGGSNTYIEALVEDSIIN-FRANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMF 150 (269)
Q Consensus 75 ---~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~-~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~ 150 (269)
.....+.+.|. .+|+.-+..|-..--. +.. +...-.+.++||++|.+++.+|+.+. ++...-.+++..|+
T Consensus 453 ~l~~~a~~v~~~Gg-~vI~~~~~p~~~~R~~--nr~llk~~g~fivV~L~~p~e~l~~R~rr~---Ll~~~~~~~i~~l~ 526 (568)
T PRK05537 453 RIGFVASEITKNGG-IAICAPIAPYRATRRE--VREMIEAYGGFIEVHVATPLEVCEQRDRKG---LYAKAREGKIKGFT 526 (568)
T ss_pred HHHHHHHHHHhCCC-EEEEEeCCchHHHHHH--HHHHHhhcCCEEEEEEcCCHHHHHHhcccc---ccccchhchhhccc
Confidence 12234556676 5555555444211100 001 11112356899999999999997443 33333345666665
Q ss_pred CC
Q 044048 151 DP 152 (269)
Q Consensus 151 ~~ 152 (269)
..
T Consensus 527 ~~ 528 (568)
T PRK05537 527 GI 528 (568)
T ss_pred cc
Confidence 43
No 120
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.46 E-value=0.00045 Score=63.32 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=76.3
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
+|.+|||||++|.+|++.+. ..||+-|++.+=++- .. ..-.....+.....
T Consensus 7 ~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~-y~-----------------------~~~~Ek~~R~~l~s 62 (270)
T PF08433_consen 7 CGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRND-YA-----------------------DSKKEKEARGSLKS 62 (270)
T ss_dssp E--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSS-S-------------------------GGGHHHHHHHHHH
T ss_pred EcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhh-hh-----------------------chhhhHHHHHHHHH
Confidence 59999999999999999753 356776666622221 00 11234455556666
Q ss_pred HHHHHHhcCCceEEEcccHHHHHHHHcchhh-hhccccceEEEEEeCCHHHHHHHHHHHHHH-HHHcCcHHHHHhhcCC-
Q 044048 76 AIDKIIENGHLPIIVGGSNTYIEALVEDSII-NFRANYDCCFIWMDVDPLVLYKYVGIRVDK-MVETGLVDEVRDMFDP- 152 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~-~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~-Ml~~Gll~Ev~~l~~~- 152 (269)
.++...+++. .||+.+. +|++++-..... +-.....+|+++++++.+.-.+|=.+|-+. -+....++++..=|+.
T Consensus 63 ~v~r~ls~~~-iVI~Dd~-nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P 140 (270)
T PF08433_consen 63 AVERALSKDT-IVILDDN-NYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEP 140 (270)
T ss_dssp HHHHHHTT-S-EEEE-S----SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---T
T ss_pred HHHHhhccCe-EEEEeCC-chHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCC
Confidence 6777667764 5667777 577776553211 112246789999999999988888888533 3444445554444543
Q ss_pred CC--Ccccc------cccccCHHHHHHHHh
Q 044048 153 NA--DYNRG------IRRSIGAPELHEYLK 174 (269)
Q Consensus 153 ~~--~~~~~------~~qaIGykE~~~yl~ 174 (269)
.. .++.+ .-..+-+.+++..+-
T Consensus 141 ~~~nrWD~plf~i~~~~~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 141 DPKNRWDSPLFTIDSSDEELPLEEIWNALF 170 (270)
T ss_dssp TSS-GGGS-SEEEE-TTS---HHHHHHHHH
T ss_pred CCCCCccCCeEEEecCCCCCCHHHHHHHHH
Confidence 11 11112 123445778888773
No 121
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.45 E-value=0.00029 Score=55.57 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=27.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcccee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVY 32 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvY 32 (269)
.||+|+|||+++..+|+.++.+++..|...+.
T Consensus 4 ~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred ECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence 49999999999999999999988887776544
No 122
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.44 E-value=0.00075 Score=58.42 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=52.9
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
+|++|||||+||..|+..+. ..+++.|.+. +.+. . .+++.+.+ ....+.. ...
T Consensus 30 ~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~--~~~~-----------~-----~~~~~~~~---~~~~~~~-l~~ 87 (198)
T PRK03846 30 TGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR--HGLC-----------S-----DLGFSDAD---RKENIRR-VGE 87 (198)
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH--hhhh-----------h-----cCCcCccc---HHHHHHH-HHH
Confidence 59999999999999999862 3445555443 2211 0 01111111 1222222 222
Q ss_pred HHHHHHhcCCceEEEcccHH---HHHHHHcchhhhhccccceEEEEEeCCHHHHHHH
Q 044048 76 AIDKIIENGHLPIIVGGSNT---YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKY 129 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~---Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~R 129 (269)
....+...|.+ |++..+.. |.+.+.. +.....+.++||++|.+.+.+|
T Consensus 88 ~a~~~~~~G~~-VI~~~~~~~~~~R~~~r~-----~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 88 VAKLMVDAGLV-VLTAFISPHRAERQMVRE-----RLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHHhhCCCE-EEEEeCCCCHHHHHHHHH-----HcccCCEEEEEEcCCHHHHHhc
Confidence 33345556664 44433322 2222221 0112245679999999999999
No 123
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.44 E-value=0.001 Score=56.22 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=19.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHH
Q 044048 113 DCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 113 ~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
+..++||++|.+++.+|+.+|-
T Consensus 126 ~~~~i~l~~~~~~~~~R~~~R~ 147 (200)
T cd01672 126 PDLTILLDIDPEVGLARIEARG 147 (200)
T ss_pred CCEEEEEeCCHHHHHHHHHhcC
Confidence 4578999999999999998883
No 124
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.43 E-value=0.00086 Score=63.46 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=25.8
Q ss_pred cceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhh
Q 044048 112 YDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDM 149 (269)
Q Consensus 112 ~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l 149 (269)
..++.+|+++|.+++.+|..+|- ...-+|+-+.
T Consensus 154 ~~~~~V~ld~ple~~l~RN~~R~-----~~v~devie~ 186 (340)
T TIGR03575 154 LGFCQLFLDCPVESCLLRNKQRP-----VPLPDETIQL 186 (340)
T ss_pred CCEEEEEEeCCHHHHHHHHhcCC-----CCCCHHHHHH
Confidence 46799999999999999999994 3455565444
No 125
>PLN02348 phosphoribulokinase
Probab=97.38 E-value=0.0005 Score=66.10 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=27.6
Q ss_pred CCCCcCchhHHHHHHHHHcCC--------------------eeeeCCcccee
Q 044048 1 MGATATGKTKLSIDLAIHFSG--------------------EAINSDKIQVY 32 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~--------------------eiIs~Ds~QvY 32 (269)
.|++||||||||..|+..++. .+|+.|....|
T Consensus 55 aG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~ 106 (395)
T PLN02348 55 AADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSL 106 (395)
T ss_pred ECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCC
Confidence 499999999999999999863 48999997754
No 126
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.00053 Score=58.92 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=55.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCC-CCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEA-DYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~-~~~~~~f~~~a~~~i~~ 79 (269)
.|++|+||||++..|+ .+|..+|+.-. +. ..++++.-.|... ++.+. . +.+...++.
T Consensus 6 TGTPGvGKTT~~~~L~-~lg~~~i~l~e------------------l~-~e~~~~~~~de~r~s~~vD-~-d~~~~~le~ 63 (180)
T COG1936 6 TGTPGVGKTTVCKLLR-ELGYKVIELNE------------------LA-KENGLYTEYDELRKSVIVD-V-DKLRKRLEE 63 (180)
T ss_pred eCCCCCchHHHHHHHH-HhCCceeeHHH------------------HH-HhcCCeeccCCccceEEee-H-HHHHHHHHH
Confidence 5999999999999999 89998887432 21 2234444444321 11111 1 222333333
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
+. +....|+.|=.. .|+ +-.-.+|.|.+++++|++|+..|
T Consensus 64 ~~-~~~~~Ivd~H~~----hl~---------~~~dlVvVLR~~p~~L~~RLk~R 103 (180)
T COG1936 64 LL-REGSGIVDSHLS----HLL---------PDCDLVVVLRADPEVLYERLKGR 103 (180)
T ss_pred Hh-ccCCeEeechhh----hcC---------CCCCEEEEEcCCHHHHHHHHHHc
Confidence 33 223233432111 111 11127788999999999999998
No 127
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.35 E-value=0.0017 Score=54.96 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=51.6
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHH---HHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEE---FCEH 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~---f~~~ 72 (269)
+|.+||||||||..|.+++. ..++..|.+. +++ .++-.|+..+ ..+.
T Consensus 8 tGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR--~~l-----------------------~~dl~fs~~dR~e~~rr 62 (156)
T PF01583_consen 8 TGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR--HGL-----------------------NADLGFSKEDREENIRR 62 (156)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC--TTT-----------------------TTT--SSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh--hcc-----------------------CCCCCCCHHHHHHHHHH
Confidence 48999999999999999873 3455555432 333 1111344432 2222
Q ss_pred HHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHH
Q 044048 73 ALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKY 129 (269)
Q Consensus 73 a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~R 129 (269)
.-..-.-+.+.|.++|+. -...|- ..-. .........++.-+|+++|.+++.+|
T Consensus 63 ~~~~A~ll~~~G~ivIva-~isp~~-~~R~-~~R~~~~~~~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 63 IAEVAKLLADQGIIVIVA-FISPYR-EDRE-WARELIPNERFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp HHHHHHHHHHTTSEEEEE-----SH-HHHH-HHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEe-eccCch-HHHH-HHHHhCCcCceEEEEeCCCHHHHHHh
Confidence 222222344555555444 444442 1111 00011112257889999999999998
No 128
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.34 E-value=0.00061 Score=61.57 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=22.2
Q ss_pred CCCCcCchhHHHHHHHHHc-------CCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF-------SGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-------~~eiIs~Ds~ 29 (269)
.||+|||||++|..+|+.+ .+.+++++.-
T Consensus 48 ~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 48 KGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred EcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 4999999999999999875 2356655543
No 129
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.33 E-value=0.0016 Score=55.57 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHHH
Q 044048 113 DCCFIWMDVDPLVLYKYVGIRVDK 136 (269)
Q Consensus 113 ~~~~~~l~~~~e~L~~Ri~~Rv~~ 136 (269)
+..+++|+++.++..+|+.+|-+.
T Consensus 125 pd~~i~l~~~~~~~~~Ri~~R~r~ 148 (193)
T cd01673 125 PDLVIYLDASPETCLKRIKKRGRP 148 (193)
T ss_pred CCEEEEEeCCHHHHHHHHHhcCcH
Confidence 558899999999999999998654
No 130
>PLN02674 adenylate kinase
Probab=97.30 E-value=0.00076 Score=60.99 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=28.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+||||||+|..||+++|...||++.+-
T Consensus 37 ~G~PGsGKgT~a~~La~~~~~~his~Gdll 66 (244)
T PLN02674 37 IGPPGSGKGTQSPIIKDEYCLCHLATGDML 66 (244)
T ss_pred ECCCCCCHHHHHHHHHHHcCCcEEchhHHH
Confidence 599999999999999999999999998865
No 131
>PRK14526 adenylate kinase; Provisional
Probab=97.29 E-value=0.0009 Score=59.09 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+||||||++..||+.++..+||++.+-
T Consensus 6 ~G~pGsGKsT~a~~La~~~~~~~is~G~ll 35 (211)
T PRK14526 6 LGPPGSGKGTIAKILSNELNYYHISTGDLF 35 (211)
T ss_pred ECCCCCCHHHHHHHHHHHhCCceeecChHH
Confidence 599999999999999999999999988863
No 132
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.29 E-value=0.00046 Score=70.59 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=29.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGL 35 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l 35 (269)
.||+|||||++|..||+++|.++++.| ++||.+
T Consensus 448 ~g~~~~gks~~~~~l~~~~~~~~~~~~--~~~~~~ 480 (661)
T PRK11860 448 DGPTASGKGTVAARVAEALGYHYLDSG--ALYRLT 480 (661)
T ss_pred eCCCCCCHHHHHHHHHHHhCCeEecHH--HhhhHH
Confidence 499999999999999999999996666 688975
No 133
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.25 E-value=0.00068 Score=65.28 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=26.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|..||||||++..|++ +|..+|++|.+
T Consensus 7 tG~igsGKStv~~~L~~-~G~~vidaD~i 34 (395)
T PRK03333 7 TGGIGAGKSTVAARLAE-LGAVVVDADVL 34 (395)
T ss_pred ECCCCCCHHHHHHHHHH-CCCeEEehHHH
Confidence 59999999999999997 89999999976
No 134
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00015 Score=62.40 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=27.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+||||||+|..||++++.+.|+.|.|-
T Consensus 6 lG~pGaGK~T~A~~La~~~~i~hlstgd~~ 35 (178)
T COG0563 6 LGPPGAGKSTLAKKLAKKLGLPHLDTGDIL 35 (178)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEcHhHHh
Confidence 599999999999999999999999877754
No 135
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.24 E-value=0.0048 Score=54.37 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
|..||||||++..|++.++.+++..+.
T Consensus 6 G~~GsGKSTl~~~L~~~l~~~~~~e~~ 32 (219)
T cd02030 6 GNIASGKGKLAKELAEKLGMKYFPEAG 32 (219)
T ss_pred cCCCCCHHHHHHHHHHHhCCCeeeccc
Confidence 899999999999999999988776553
No 136
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.15 E-value=0.00046 Score=60.21 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|+.|||||+++..|+. +|..+|++|.+
T Consensus 5 tG~~gsGKst~~~~l~~-~g~~~i~~D~i 32 (196)
T PRK14732 5 TGMIGGGKSTALKILEE-LGAFGISADRL 32 (196)
T ss_pred ECCCCccHHHHHHHHHH-CCCEEEecchH
Confidence 59999999999998875 69999999986
No 137
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.14 E-value=0.0004 Score=59.31 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=58.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhh-cCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESER-QGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~-~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+|++|||||++|.+++...+..++- +.|++|-..|+ ..|.+|--.. ...|+..++..+..+.+.+
T Consensus 5 ~G~~~sGKS~~a~~~~~~~~~~~~y-----------~at~~~~d~em~~rI~~H~~~R---~~~w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 5 TGGARSGKSRFAERLAAELGGPVTY-----------IATAEAFDDEMAERIARHRKRR---PAHWRTIETPRDLVSALKE 70 (169)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCeEE-----------EEccCcCCHHHHHHHHHHHHhC---CCCceEeecHHHHHHHHHh
Confidence 5999999999999999885444333 46777766664 3455553222 3357777776676666654
Q ss_pred HHhcCCceEEEcccHHHHHHHHc
Q 044048 80 IIENGHLPIIVGGSNTYIEALVE 102 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~ 102 (269)
.. +.-.|++.+-+.|+..++.
T Consensus 71 ~~--~~~~VLIDclt~~~~n~l~ 91 (169)
T cd00544 71 LD--PGDVVLIDCLTLWVTNLLF 91 (169)
T ss_pred cC--CCCEEEEEcHhHHHHHhCC
Confidence 42 3347899998888888775
No 138
>PLN02459 probable adenylate kinase
Probab=97.13 E-value=0.0014 Score=59.85 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=27.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+||||||+|..||+.+|...||+..+-
T Consensus 35 ~G~PGsGK~T~a~~la~~~~~~~is~gdll 64 (261)
T PLN02459 35 LGCPGVGKGTYASRLSKLLGVPHIATGDLV 64 (261)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEeCcHHH
Confidence 599999999999999999999999987754
No 139
>PRK07429 phosphoribulokinase; Provisional
Probab=97.13 E-value=0.0035 Score=58.99 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=26.4
Q ss_pred CCCCcCchhHHHHHHHHHcC---CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS---GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~---~eiIs~Ds~Q 30 (269)
.|++|||||||+..|+..++ +.+|+.|.+.
T Consensus 14 ~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 14 AGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred ECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 49999999999999999987 5688999863
No 140
>PRK06620 hypothetical protein; Validated
Probab=97.13 E-value=0.0032 Score=55.61 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=21.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAIN 25 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs 25 (269)
.||+|||||.|+..+++..+..+++
T Consensus 50 ~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 50 KGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ECCCCCCHHHHHHHHHhccCCEEcc
Confidence 4999999999999999988776655
No 141
>PRK14529 adenylate kinase; Provisional
Probab=97.13 E-value=0.0022 Score=57.28 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=25.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
+||+||||||+|..||+.++...||+..
T Consensus 6 ~G~PGsGK~T~a~~La~~~~~~~is~gd 33 (223)
T PRK14529 6 FGPNGSGKGTQGALVKKKYDLAHIESGA 33 (223)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCcccch
Confidence 5999999999999999999999887543
No 142
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.11 E-value=0.00025 Score=71.36 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=26.4
Q ss_pred CCCCcCchhHHHHHHHHHcC-CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-~eiIs~Ds~Q 30 (269)
.||+|||||||+..|+..++ ..+|+.|...
T Consensus 71 aGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 71 AGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred ECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 49999999999999999985 4699999963
No 143
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.09 E-value=0.00032 Score=61.01 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=29.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc--eec
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ--VYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q--vYk 33 (269)
+|+.|||||+++..|++.+|.++|++|.+. +|+
T Consensus 7 tG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~ 41 (195)
T PRK14730 7 TGGIASGKSTVGNYLAQQKGIPILDADIYAREALA 41 (195)
T ss_pred ECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHh
Confidence 599999999999999999999999999973 454
No 144
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00098 Score=59.80 Aligned_cols=73 Identities=26% Similarity=0.398 Sum_probs=58.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCC--CCCHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEA--DYPVEEFCEHALRAID 78 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~--~~~~~~f~~~a~~~i~ 78 (269)
+||.||||||||..|+-.-+.+|.+.+- +|+|-||..-.|+.--+.|+ ++.+-.|.+ -.+..+|.+.|..+..
T Consensus 36 MGPNGsGKSTLa~~i~G~p~Y~Vt~G~I--~~~GedI~~l~~~ERAr~Gi---fLafQ~P~ei~GV~~~~fLr~a~n~~~ 110 (251)
T COG0396 36 MGPNGSGKSTLAYTIMGHPKYEVTEGEI--LFDGEDILELSPDERARAGI---FLAFQYPVEIPGVTNSDFLRAAMNARR 110 (251)
T ss_pred ECCCCCCHHHHHHHHhCCCCceEecceE--EECCcccccCCHhHHHhcCC---EEeecCCccCCCeeHHHHHHHHHHhhh
Confidence 6999999999999999887788888776 78999998877665555554 566666665 5799999998887753
No 145
>PLN02422 dephospho-CoA kinase
Probab=97.06 E-value=0.00068 Score=60.85 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=26.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|+.|||||+++..|+ .+|+.+|++|.+
T Consensus 7 tG~igsGKstv~~~l~-~~g~~~idaD~~ 34 (232)
T PLN02422 7 TGGIASGKSTVSNLFK-SSGIPVVDADKV 34 (232)
T ss_pred ECCCCCCHHHHHHHHH-HCCCeEEehhHH
Confidence 4899999999999999 689999999986
No 146
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.02 E-value=0.0035 Score=63.81 Aligned_cols=100 Identities=12% Similarity=0.209 Sum_probs=59.3
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH--
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA-- 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a-- 73 (269)
+|++|||||++|..|++++ +..+|+.|.+. +.+. . ...|+..+-...+
T Consensus 466 ~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r--~~l~--~---------------------~~~~~~~~r~~~~~~ 520 (632)
T PRK05506 466 TGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVR--HGLN--R---------------------DLGFSDADRVENIRR 520 (632)
T ss_pred cCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhh--hccC--C---------------------CCCCCHHHHHHHHHH
Confidence 5999999999999999997 34788889865 4442 0 0123333222222
Q ss_pred -HHHHHHHHhcCCceEEEcccHHH--HHHHHcchhhhhccccceEEEEEeCCHHHHHHHH
Q 044048 74 -LRAIDKIIENGHLPIIVGGSNTY--IEALVEDSIINFRANYDCCFIWMDVDPLVLYKYV 130 (269)
Q Consensus 74 -~~~i~~i~~~~~~pIivGGt~~Y--~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri 130 (269)
......+.+.|. .|++..+..| .+..+. .......++++||++|.+.+.+|.
T Consensus 521 l~~~a~~~~~~G~-~Vivda~~~~~~~R~~~r----~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 521 VAEVARLMADAGL-IVLVSFISPFREERELAR----ALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHHHHHHhCCC-EEEEECCCCCHHHHHHHH----HhcccCCeEEEEECCCHHHHHhhC
Confidence 222233445565 5566556432 111111 111223678999999999999993
No 147
>PRK13975 thymidylate kinase; Provisional
Probab=97.00 E-value=0.0024 Score=54.50 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=20.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.|+.||||||++..||+.++..
T Consensus 8 eG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 8 EGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred ECCCCCCHHHHHHHHHHHhCCC
Confidence 4999999999999999999864
No 148
>PLN02842 nucleotide kinase
Probab=96.97 E-value=0.0036 Score=62.06 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=26.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||+.++..+|+++.+
T Consensus 3 ~G~PGSGKSTqa~~Lak~lg~~hIs~gdL 31 (505)
T PLN02842 3 SGAPASGKGTQCELIVHKFGLVHISTGDL 31 (505)
T ss_pred eCCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence 59999999999999999999999998764
No 149
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.96 E-value=0.0011 Score=57.10 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=25.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|..|||||+++..|++ +|+.+|+||.+
T Consensus 6 TG~igsGKStv~~~l~~-~G~~vidaD~i 33 (180)
T PF01121_consen 6 TGGIGSGKSTVSKILAE-LGFPVIDADEI 33 (180)
T ss_dssp EESTTSSHHHHHHHHHH-TT-EEEEHHHH
T ss_pred ECCCcCCHHHHHHHHHH-CCCCEECccHH
Confidence 48999999999999998 89999999985
No 150
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.95 E-value=0.0057 Score=56.61 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.3
Q ss_pred cceEEEEEeCCHHHHHHHHHH
Q 044048 112 YDCCFIWMDVDPLVLYKYVGI 132 (269)
Q Consensus 112 ~~~~~~~l~~~~e~L~~Ri~~ 132 (269)
..+.++||+++.++|.+|+..
T Consensus 85 ~~~~iI~L~a~~e~L~~Rl~~ 105 (288)
T PRK05416 85 IDVRVLFLDASDEVLIRRYSE 105 (288)
T ss_pred CcEEEEEEECCHHHHHHHHhh
Confidence 456789999999999999974
No 151
>PHA00729 NTP-binding motif containing protein
Probab=96.94 E-value=0.0028 Score=56.73 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.6
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|||||+||..||.+++
T Consensus 23 tG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 23 FGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 59999999999999999875
No 152
>PRK06893 DNA replication initiation factor; Validated
Probab=96.92 E-value=0.0091 Score=52.99 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=46.9
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
.||+|||||.|+..+|..+ ++.+++++..+.+.. .+ .+......=-++|-++... ....+......
T Consensus 45 ~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~-~~------~~~~~~~dlLilDDi~~~~--~~~~~~~~l~~ 115 (229)
T PRK06893 45 WGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSP-AV------LENLEQQDLVCLDDLQAVI--GNEEWELAIFD 115 (229)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhH-HH------HhhcccCCEEEEeChhhhc--CChHHHHHHHH
Confidence 4999999999999999875 455666643221100 00 1111122222444443211 12344555666
Q ss_pred HHHHHHhcCCceEEEccc
Q 044048 76 AIDKIIENGHLPIIVGGS 93 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt 93 (269)
.++.+.++|+..|+++++
T Consensus 116 l~n~~~~~~~~illits~ 133 (229)
T PRK06893 116 LFNRIKEQGKTLLLISAD 133 (229)
T ss_pred HHHHHHHcCCcEEEEeCC
Confidence 777777778766677665
No 153
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.86 E-value=0.0018 Score=56.90 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=28.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc--ceec
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI--QVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~--QvYk 33 (269)
+|-.|||||++|.-++. +|.++|++|.. |+|.
T Consensus 8 TG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~ 41 (201)
T COG0237 8 TGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVE 41 (201)
T ss_pred ecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHh
Confidence 58899999999999998 99999999974 5555
No 154
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.85 E-value=0.00074 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
+||+|||||+++..||..++..
T Consensus 8 ~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 8 VGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred ECCCCCcHHHHHHHHHhccCCC
Confidence 5999999999999999998764
No 155
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00077 Score=63.18 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=28.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
+||||||||-||.-||+-++.++-=+|.-.+
T Consensus 103 iGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 103 IGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred ECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence 5999999999999999999999999998664
No 156
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.82 E-value=0.0038 Score=53.21 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=19.1
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.|+.||||||++..|++.++.
T Consensus 9 eG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 9 EGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 399999999999999999864
No 157
>PRK09087 hypothetical protein; Validated
Probab=96.80 E-value=0.01 Score=52.86 Aligned_cols=115 Identities=11% Similarity=0.153 Sum_probs=60.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||+|+..+++..++.+|+.+.+. .+ +.+ .... .--++|-++.- ..+. ...-..+..+
T Consensus 50 ~G~~GsGKThLl~~~~~~~~~~~i~~~~~~--~~--~~~------~~~~-~~l~iDDi~~~-~~~~----~~lf~l~n~~ 113 (226)
T PRK09087 50 AGPVGSGKTHLASIWREKSDALLIHPNEIG--SD--AAN------AAAE-GPVLIEDIDAG-GFDE----TGLFHLINSV 113 (226)
T ss_pred ECCCCCCHHHHHHHHHHhcCCEEecHHHcc--hH--HHH------hhhc-CeEEEECCCCC-CCCH----HHHHHHHHHH
Confidence 599999999999999999888888876322 11 000 0000 11244444332 1232 3345566777
Q ss_pred HhcCCceEEEccc--HHHHHHHHcchhhhhccccc-eEEEEEeCCH-HHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGS--NTYIEALVEDSIINFRANYD-CCFIWMDVDP-LVLYKYVGIRVDK 136 (269)
Q Consensus 81 ~~~~~~pIivGGt--~~Y~~~ll~g~~~~~~~~~~-~~~~~l~~~~-e~L~~Ri~~Rv~~ 136 (269)
.++|+ +||.+++ ..++...+. .++.++. ..++-+.++. +.+.+.+.++++.
T Consensus 114 ~~~g~-~ilits~~~p~~~~~~~~----dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 114 RQAGT-SLLMTSRLWPSSWNVKLP----DLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred HhCCC-eEEEECCCChHHhccccc----cHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 77777 5555554 223322222 1222332 2455565554 4555555555433
No 158
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.79 E-value=0.0055 Score=54.66 Aligned_cols=122 Identities=10% Similarity=0.091 Sum_probs=62.0
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCC-HhhhcCCCceecccCCCCCCCC-HHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVT-ESERQGVPHHLLGFVDPEADYP-VEEFCEHA 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt-~~e~~~v~hhl~~~~~~~~~~~-~~~f~~~a 73 (269)
.||+|||||.|+..++.... ...+++|...-+ .+. .+....+.--++|-++. ++ -.++....
T Consensus 51 ~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~dlliiDdi~~---~~~~~~~~~~l 119 (235)
T PRK08084 51 WSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQLSLVCIDNIEC---IAGDELWEMAI 119 (235)
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhhCCEEEEeChhh---hcCCHHHHHHH
Confidence 49999999999999998754 346666542211 000 01111111123333322 11 13344455
Q ss_pred HHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccc-eEEEEEeCC-HHHHHHHHHHHHH
Q 044048 74 LRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYD-CCFIWMDVD-PLVLYKYVGIRVD 135 (269)
Q Consensus 74 ~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~-~~~~~l~~~-~e~L~~Ri~~Rv~ 135 (269)
-..+..+.+.|+..++.-|+.-..+ +......+..|+. ..++-+.++ .+.+.+.+.++..
T Consensus 120 f~l~n~~~e~g~~~li~ts~~~p~~--l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 120 FDLYNRILESGRTRLLITGDRPPRQ--LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred HHHHHHHHHcCCCeEEEeCCCChHH--cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 5667777777876677766633321 1111112333432 245556664 5677777765553
No 159
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.78 E-value=0.0073 Score=55.36 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=25.1
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~Ds~ 29 (269)
+|++|||||||+..|+..+ ++.+|+.|.+
T Consensus 5 ~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 5 AGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred ECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 5999999999999999887 4568999954
No 160
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0036 Score=55.14 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=28.0
Q ss_pred CCCCcCchhHHHHHHHHHcC-CeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHFS-GEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-~eiIs~Ds~QvYk~ 34 (269)
.|.|.|||||||..|.+.|+ +.+|+-|- .||-
T Consensus 10 SG~TnsGKTTLak~l~~~f~~~~lIhqDD--FyKp 42 (225)
T KOG3308|consen 10 SGCTNSGKTTLAKSLHRFFPGCSLIHQDD--FYKP 42 (225)
T ss_pred ecccCCCHhHHHHHHHHHccCCeeecccc--ccCc
Confidence 48999999999999999995 68999998 5663
No 161
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.72 E-value=0.0025 Score=49.89 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=26.9
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~Ds~QvYk~ 34 (269)
+||+|+|||+++..++..+ +..++.+|.-+.+..
T Consensus 25 ~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 25 YGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG 61 (151)
T ss_pred ECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh
Confidence 5999999999999999998 666766666554443
No 162
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.72 E-value=0.00075 Score=58.89 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=25.3
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~Q 30 (269)
+|||||||||.+.+||..+. ..+|++|..+
T Consensus 7 vGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 7 VGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred ECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 59999999999999998763 4588988754
No 163
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.70 E-value=0.0087 Score=61.80 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=30.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLD 36 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~ 36 (269)
.||+|||||++|..||+++|...|+... +||.+.
T Consensus 7 ~G~~GsGKST~ak~la~~l~~~~~~~g~--~~r~~~ 40 (712)
T PRK09518 7 DGPAGVGKSSVSRALAQYLGYAYLDTGA--MYRACA 40 (712)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEeecCc--EeHHHH
Confidence 3999999999999999999999999988 788754
No 164
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0013 Score=58.42 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=28.3
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCccceecCC
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDKIQVYKGL 35 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l 35 (269)
||.||||||+|..||++||...++.-. +||-+
T Consensus 11 GPagsGKsTvak~lA~~Lg~~yldTGa--mYRa~ 42 (222)
T COG0283 11 GPAGSGKSTVAKILAEKLGFHYLDTGA--MYRAV 42 (222)
T ss_pred CCCccChHHHHHHHHHHhCCCeecccH--HHHHH
Confidence 999999999999999999999887665 67854
No 165
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.60 E-value=0.0056 Score=50.06 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=44.4
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHHH
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKII 81 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i~ 81 (269)
||||+|||-+|.-||+.+=-.-... ..-|+++...+....=.+.+|.....+.|.+..
T Consensus 60 G~tGtGKn~v~~liA~~ly~~G~~S----------------------~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~~~v 117 (127)
T PF06309_consen 60 GWTGTGKNFVSRLIAEHLYKSGMKS----------------------PFVHQFIATHHFPHNSNVDEYKEQLKSWIRGNV 117 (127)
T ss_pred cCCCCcHHHHHHHHHHHHHhcccCC----------------------CceeeecccccCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999952222222 223455555554455588899999999888876
Q ss_pred hcCCceE
Q 044048 82 ENGHLPI 88 (269)
Q Consensus 82 ~~~~~pI 88 (269)
.+-.-.+
T Consensus 118 ~~C~rsl 124 (127)
T PF06309_consen 118 SRCPRSL 124 (127)
T ss_pred HhCCcCe
Confidence 6543343
No 166
>PF13173 AAA_14: AAA domain
Probab=96.60 E-value=0.0022 Score=51.59 Aligned_cols=83 Identities=23% Similarity=0.217 Sum_probs=52.4
Q ss_pred CCCCcCchhHHHHHHHHHcC----CeeeeCCccceecCCccccCCCCHhhh-----cCCCceecccCCCCCCCCHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS----GEAINSDKIQVYKGLDIATNKVTESER-----QGVPHHLLGFVDPEADYPVEEFCE 71 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~----~eiIs~Ds~QvYk~l~I~Takpt~~e~-----~~v~hhl~~~~~~~~~~~~~~f~~ 71 (269)
.||.+||||+|+.++++.+. .-.||+|.....+-.+. . -.+.. .+-.+-++|.+ ++..
T Consensus 8 ~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~i~iDEi---------q~~~ 74 (128)
T PF13173_consen 8 TGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D---LLEYFLELIKPGKKYIFIDEI---------QYLP 74 (128)
T ss_pred ECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h---hHHHHHHhhccCCcEEEEehh---------hhhc
Confidence 49999999999999999875 56888888776442110 0 01111 12233444443 3445
Q ss_pred HHHHHHHHHHhcC-CceEEEcccHHH
Q 044048 72 HALRAIDKIIENG-HLPIIVGGSNTY 96 (269)
Q Consensus 72 ~a~~~i~~i~~~~-~~pIivGGt~~Y 96 (269)
.....++.+.+.+ ...|++-||..-
T Consensus 75 ~~~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 75 DWEDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred cHHHHHHHHHHhccCceEEEEccchH
Confidence 5566667776666 678888888553
No 167
>PRK13973 thymidylate kinase; Provisional
Probab=96.57 E-value=0.0077 Score=52.84 Aligned_cols=22 Identities=14% Similarity=0.008 Sum_probs=19.5
Q ss_pred ceEEEEEeCCHHHHHHHHHHHH
Q 044048 113 DCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 113 ~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
+-++++|++|+++..+|+.+|-
T Consensus 129 PD~vi~Ldv~~e~~~~Rl~~R~ 150 (213)
T PRK13973 129 PDLTLILDIPAEVGLERAAKRR 150 (213)
T ss_pred CCEEEEEeCCHHHHHHHHHhcc
Confidence 4588999999999999998884
No 168
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.54 E-value=0.0017 Score=63.04 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=29.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcccee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVY 32 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvY 32 (269)
+||||||||++|..||+.++.+++.+|+..+.
T Consensus 53 iGppG~GKT~lAraLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 53 IGPTGVGKTEIARRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEEeecceee
Confidence 59999999999999999999999999986543
No 169
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.03 Score=48.02 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=62.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCe--eeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH---
Q 044048 1 MGATATGKTKLSIDLAIHFSGE--AINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR--- 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e--iIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~--- 75 (269)
+||+|+||-+|--.....+.+. +.-+ ..-|-|--+.|+ =.| +..+..+|...+.+
T Consensus 11 vGPSGAGKDtl~~~ar~~l~~~~r~~fv-rRvITRpa~ag~----------EdH---------~avs~~eF~~~a~~g~F 70 (192)
T COG3709 11 VGPSGAGKDTLLDAARARLAGRPRLHFV-RRVITRPADAGG----------EDH---------DALSEAEFNTRAGQGAF 70 (192)
T ss_pred ECCCCCChHHHHHHHHHHhccCCceEEE-EEEecccCCCCc----------ccc---------cccCHHHHHHHhhcCce
Confidence 6999999999988888887553 1110 011112222221 111 13566677666543
Q ss_pred ---------------HHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccc-eEEEEEeCCHHHHHHHHHHHH
Q 044048 76 ---------------AIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYD-CCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 76 ---------------~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~-~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.|++-+.+|. .|++-||=.|+- ..+.+|. ..++.|.+++++|.+|+..|=
T Consensus 71 AlsWqAhGL~Ygip~eId~wl~~G~-vvl~NgSRa~Lp--------~arrry~~Llvv~ita~p~VLaqRL~~RG 136 (192)
T COG3709 71 ALSWQAHGLSYGIPAEIDLWLAAGD-VVLVNGSRAVLP--------QARRRYPQLLVVCITASPEVLAQRLAERG 136 (192)
T ss_pred eEEehhcCccccCchhHHHHHhCCC-EEEEeccHhhhH--------HHHHhhhcceeEEEecCHHHHHHHHHHhc
Confidence 3444456666 556666755542 2233443 466788999999999999985
No 170
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.51 E-value=0.022 Score=50.02 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~ 29 (269)
.||+|||||+|+..++... ...+|++.++
T Consensus 48 ~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 48 WGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 4999999999999999875 4456665553
No 171
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=96.50 E-value=0.0099 Score=50.82 Aligned_cols=121 Identities=16% Similarity=0.200 Sum_probs=56.5
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCccc-eecCCccccCCCCH-hhhc---CCCceec-ccCCC--CCCCCHHHHHHHH
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDKIQ-VYKGLDIATNKVTE-SERQ---GVPHHLL-GFVDP--EADYPVEEFCEHA 73 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q-vYk~l~I~Takpt~-~e~~---~v~hhl~-~~~~~--~~~~~~~~f~~~a 73 (269)
+..|||++++|..||+++|.++++-+-+. +-+.+.+....... +|.. .+.+.+. +.... ........+...-
T Consensus 6 r~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (179)
T PF13189_consen 6 RQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDKIFRAQ 85 (179)
T ss_dssp E-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------HHHHHH
T ss_pred CCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHHHHHHH
Confidence 57899999999999999999987654331 11122222211100 0000 0000000 00000 0112233333444
Q ss_pred HHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 74 LRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 74 ~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.+.|.++.+.| -.|++|=.+.|+ +.+ ..+++.++|.+|.+.--+|+.+|
T Consensus 86 ~~~i~~la~~~-~~Vi~GR~a~~i---l~~-------~~~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 86 SEIIRELAAKG-NCVIVGRCANYI---LRD-------IPNVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp HHHHHHHHH----EEEESTTHHHH---TTT--------TTEEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHhccC-CEEEEecCHhhh---hCC-------CCCeEEEEEECCHHHHHHHHHHH
Confidence 46777875555 488999888775 432 22678899999998777777666
No 172
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.50 E-value=0.0017 Score=52.49 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
+||+|+|||+|+..+|+.++.+++
T Consensus 5 ~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 5 VGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EESSSSSHHHHHHHHHHHHTCEEE
T ss_pred ECCCCCCHHHHHHHHHHHhhcceE
Confidence 499999999999999999987653
No 173
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.49 E-value=0.0019 Score=56.89 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=27.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|+.|||||+++..|++.+|..+|++|.+
T Consensus 12 TG~iGsGKStv~~~l~~~lg~~vidaD~i 40 (204)
T PRK14733 12 TGGIASGKSTATRILKEKLNLNVVCADTI 40 (204)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEeccHH
Confidence 59999999999999999999999999986
No 174
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.48 E-value=0.04 Score=51.01 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=71.3
Q ss_pred CCCcCchhHHHHHHHHHcCCe--------eeeCCccceecCCccccCCCCHhhhcCCCceecc----cCCCCCCCCHHHH
Q 044048 2 GATATGKTKLSIDLAIHFSGE--------AINSDKIQVYKGLDIATNKVTESERQGVPHHLLG----FVDPEADYPVEEF 69 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~e--------iIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~----~~~~~~~~~~~~f 69 (269)
|+-|||||+||.+||.++|.+ +|-+||.- |-.-+.-+.=| -...+.| ..+|+.+ ..+.|
T Consensus 78 GnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg-~D~r~l~~~~p-------~~cr~~di~~Fy~dPS~d-lsa~~ 148 (393)
T KOG3877|consen 78 GNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYG-NDLRNLYNKFP-------ARCRLPDISMFYKDPSGD-LSAAM 148 (393)
T ss_pred CCcccCchhHHHHHHHHhCCcccccccccceeecccC-ccchhccccCC-------cccCchhHHHhccCCCcc-HHHHH
Confidence 899999999999999999865 33344421 00101111111 1123333 2366555 34444
Q ss_pred HHH--------HHHHHHHHHhcCCceEEEccc---HHHHHHHHcchh---------hhhc------cccceEEEEEeCCH
Q 044048 70 CEH--------ALRAIDKIIENGHLPIIVGGS---NTYIEALVEDSI---------INFR------ANYDCCFIWMDVDP 123 (269)
Q Consensus 70 ~~~--------a~~~i~~i~~~~~~pIivGGt---~~Y~~~ll~g~~---------~~~~------~~~~~~~~~l~~~~ 123 (269)
+.. -..+++.+++-|.-.|+.--. ..+++|+.+..- .+.+ .-.+-++|+|+.|-
T Consensus 149 Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv 228 (393)
T KOG3877|consen 149 QDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPV 228 (393)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCc
Confidence 433 345677788888766665433 225666654310 0011 11345899999999
Q ss_pred HHHHHHHHHH
Q 044048 124 LVLYKYVGIR 133 (269)
Q Consensus 124 e~L~~Ri~~R 133 (269)
....++|.+|
T Consensus 229 ~~v~~~Ik~r 238 (393)
T KOG3877|consen 229 NKVLENIKRR 238 (393)
T ss_pred HHHHHHHHhc
Confidence 9999999888
No 175
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.46 E-value=0.0017 Score=63.16 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=27.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||||||||+||..||+.++.+++.+|...
T Consensus 56 iGp~G~GKT~LAr~LAk~l~~~fi~vD~t~ 85 (443)
T PRK05201 56 IGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (443)
T ss_pred ECCCCCCHHHHHHHHHHHhCChheeecchh
Confidence 599999999999999999999999999753
No 176
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.40 E-value=0.0019 Score=55.16 Aligned_cols=30 Identities=30% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCCcCchhHHHHHHHHHcCC----eeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSG----EAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~----eiIs~Ds~Q 30 (269)
+||||+|||.+|..||+.+.. .++.+|--+
T Consensus 9 ~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 9 AGPSGVGKTELAKALAELLFVGSERPLIRIDMSE 42 (171)
T ss_dssp ESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGG
T ss_pred ECCCCCCHHHHHHHHHHHhccCCccchHHHhhhc
Confidence 599999999999999999985 666666543
No 177
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.022 Score=54.10 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||+|+|||++|..+|+.++++
T Consensus 44 ~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 44 SGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred ecCCCCCHHHHHHHHHHHhcCC
Confidence 4999999999999999999854
No 178
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.33 E-value=0.012 Score=49.49 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=23.6
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~Ds~ 29 (269)
+||+|||||+++..+|..+ + .-+|++|..
T Consensus 6 ~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 6 VGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 4999999999999999875 3 347888863
No 179
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.29 E-value=0.0032 Score=45.49 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=17.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|+.|||||+++..|++.+
T Consensus 5 ~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 5 TGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999996
No 180
>PRK06761 hypothetical protein; Provisional
Probab=96.27 E-value=0.052 Score=50.17 Aligned_cols=128 Identities=13% Similarity=0.146 Sum_probs=70.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHH----
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRA---- 76 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~---- 76 (269)
.||.||||||++..|++.++..-++++. +..-+. |.+.+.. ....|+..+|...+.+.
T Consensus 9 ~G~~GsGKTTla~~L~~~L~~~g~~v~~---~~~~~~----~~p~d~~-----------~~~~~~~eer~~~l~~~~~f~ 70 (282)
T PRK06761 9 EGLPGFGKSTTAKMLNDILSQNGIEVEL---YLEGNL----DHPADYD-----------GVACFTKEEFDRLLSNYPDFK 70 (282)
T ss_pred ECCCCCCHHHHHHHHHHhcCcCceEEEE---EecCCC----CCchhhc-----------cccCCCHHHHHHHHHhhhHHH
Confidence 4999999999999999999876666555 222111 1122221 12235666666665432
Q ss_pred ---HHHHHhcCCceEEEcccH---HHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhc
Q 044048 77 ---IDKIIENGHLPIIVGGSN---TYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMF 150 (269)
Q Consensus 77 ---i~~i~~~~~~pIivGGt~---~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~ 150 (269)
++.....|...|+. -+. -|-..+-.+ .........++ ..|.+.+.+|+.+|....+++.+.+.--.++
T Consensus 71 ~~l~~~~~~~g~~~i~~-~~~l~~~yr~~~~~~----~~~~~~v~~~h-~~p~e~i~~R~~~rw~~f~~a~l~~dq~~if 144 (282)
T PRK06761 71 EVLLKNVLKKGDYYLLP-YRKIKNEFGDQFSDE----LFNDISKNDIY-ELPFDKNTELITDRWNDFAEIALEENKVYIF 144 (282)
T ss_pred HHHHHHHHHcCCeEEEE-ehhhhHHHhhhhhhh----hcccceeeeee-cCCHHHHHHHHHHHHHHHHHHhhccCceEEE
Confidence 22233444322222 111 111111110 00111233344 8999999999999999988887776655566
Q ss_pred CC
Q 044048 151 DP 152 (269)
Q Consensus 151 ~~ 152 (269)
+.
T Consensus 145 E~ 146 (282)
T PRK06761 145 EC 146 (282)
T ss_pred ec
Confidence 54
No 181
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.24 E-value=0.0027 Score=61.55 Aligned_cols=30 Identities=30% Similarity=0.298 Sum_probs=27.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||||||||+||..||+.++.+++.+|.-.
T Consensus 114 ~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~ 143 (412)
T PRK05342 114 IGPTGSGKTLLAQTLARILDVPFAIADATT 143 (412)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 499999999999999999999988888754
No 182
>CHL00181 cbbX CbbX; Provisional
Probab=96.18 E-value=0.014 Score=53.81 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=58.2
Q ss_pred CCCCcCchhHHHHHHHHHcC-------CeeeeCCccce---ecCCccccCCCCHhhhcCCCc--eecccCCCC-CCCCHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-------GEAINSDKIQV---YKGLDIATNKVTESERQGVPH--HLLGFVDPE-ADYPVE 67 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-------~eiIs~Ds~Qv---Yk~l~I~Takpt~~e~~~v~h--hl~~~~~~~-~~~~~~ 67 (269)
.||+|||||++|..+|+.+. ++++.+++-.+ |.|- |++-+..-.....+ -++|.++-- ..=+..
T Consensus 65 ~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~---~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~ 141 (287)
T CHL00181 65 TGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGH---TAPKTKEVLKKAMGGVLFIDEAYYLYKPDNER 141 (287)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhcc---chHHHHHHHHHccCCEEEEEccchhccCCCcc
Confidence 49999999999999998752 23444433222 3221 11111111111111 245544320 000112
Q ss_pred HHHHHHHHHHHHHHhc--CCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHH
Q 044048 68 EFCEHALRAIDKIIEN--GHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKY 129 (269)
Q Consensus 68 ~f~~~a~~~i~~i~~~--~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~R 129 (269)
+|-..+...+-.+.+. +.+.||..|+.--+..++.. +..+..+++..+.+-..+.+++.+-
T Consensus 142 ~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~-np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 142 DYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYES-NPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhc-CHHHHHhCCceEEcCCcCHHHHHHH
Confidence 3445665555554433 34555555543334444432 2345556665444445555555443
No 183
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.024 Score=56.10 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++.+
T Consensus 46 ~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 46 FGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred ECCCCCCHHHHHHHHHHhcCcc
Confidence 5999999999999999999875
No 184
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.13 E-value=0.0033 Score=56.86 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=27.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|..|||||++|.-|++.+|.+||+||.+
T Consensus 7 TGgIgSGKStVs~~L~~~~G~~viDaD~i 35 (244)
T PTZ00451 7 TGGIACGKSTVSRILREEHHIEVIDADLV 35 (244)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEehHHH
Confidence 48999999999999999899999999985
No 185
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.015 Score=51.98 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCCCcCchhHHHHHHHHHcCC---eeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH----
Q 044048 1 MGATATGKTKLSIDLAIHFSG---EAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA---- 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~---eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a---- 73 (269)
.||.|+||++|...|-+.+++ =.||.+... |..-|..+..||+.+.=+......-.+|++-|
T Consensus 43 ~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~-----------pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~g 111 (231)
T KOG0707|consen 43 SGPSGVGKSTLLKRLREELGGMFGFSVSHTTRT-----------PRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSG 111 (231)
T ss_pred eCCCCcchhHHHHHHHHHcCCcceEEecCCCCC-----------CCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhc
Confidence 599999999999999999986 355655543 77778888888866543332222223333322
Q ss_pred ------HHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEe-CCHHHHHHHHHHHHHHHH
Q 044048 74 ------LRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMD-VDPLVLYKYVGIRVDKMV 138 (269)
Q Consensus 74 ------~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~-~~~e~L~~Ri~~Rv~~Ml 138 (269)
..+++++-..|++.|+- -.+.|....-...++.+++++. ++...+.+|+.+|--.|-
T Consensus 112 n~yGtsi~av~~~~~~gk~~ild--------Id~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~ 175 (231)
T KOG0707|consen 112 NKYGTSIAAVQRLMLSGKVCILD--------IDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETE 175 (231)
T ss_pred ccCCchHHHHHHHHhcCCcceee--------hhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchH
Confidence 23444444555544332 0222321111123566777776 556799999998854443
No 186
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.11 E-value=0.0038 Score=52.41 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=39.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPE 61 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~ 61 (269)
+||+|+|||++|.+|.++ +..+|+=|-..+.+.-.-.-+.++..-...+.=.-+++++..
T Consensus 20 ~G~sG~GKStlal~L~~~-g~~lvaDD~v~v~~~~~~l~~~~p~~l~g~iEvRGlGiv~v~ 79 (149)
T cd01918 20 TGPSGIGKSELALELIKR-GHRLVADDRVVVKREGGRLVGRAPEALKGLIEIRGLGIIDVP 79 (149)
T ss_pred EcCCCCCHHHHHHHHHHc-CCeEEECCEEEEEEECCEEEEeChHHhCCCcEecCceEEEch
Confidence 499999999999999987 789999998888874332233333322222332334455443
No 187
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.10 E-value=0.0042 Score=55.69 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=41.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCee--eeCCccceecCCccccCCCCHhhhcCCCc---eecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEA--INSDKIQVYKGLDIATNKVTESERQGVPH---HLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ei--Is~Ds~QvYk~l~I~Takpt~~e~~~v~h---hl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
.||+|+|||+||.-+|..++.++ +|+-.++ +..|+.. -+..... -++|.+. .|.+...+
T Consensus 56 ~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~--k~~dl~~------il~~l~~~~ILFIDEIH--------Rlnk~~qe 119 (233)
T PF05496_consen 56 YGPPGLGKTTLARIIANELGVNFKITSGPAIE--KAGDLAA------ILTNLKEGDILFIDEIH--------RLNKAQQE 119 (233)
T ss_dssp ESSTTSSHHHHHHHHHHHCT--EEEEECCC----SCHHHHH------HHHT--TT-EEEECTCC--------C--HHHHH
T ss_pred ECCCccchhHHHHHHHhccCCCeEeccchhhh--hHHHHHH------HHHhcCCCcEEEEechh--------hccHHHHH
Confidence 49999999999999999998764 3433222 2222111 0111111 1333332 23344455
Q ss_pred HHHHHHhcCCceEEEccc
Q 044048 76 AIDKIIENGHLPIIVGGS 93 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt 93 (269)
.+-...+.+.+-|++|-+
T Consensus 120 ~LlpamEd~~idiiiG~g 137 (233)
T PF05496_consen 120 ILLPAMEDGKIDIIIGKG 137 (233)
T ss_dssp HHHHHHHCSEEEEEBSSS
T ss_pred HHHHHhccCeEEEEeccc
Confidence 555566788888888743
No 188
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.08 E-value=0.0032 Score=60.14 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=25.6
Q ss_pred CCCCcCchhHHHHHHHHHcC--CeeeeCCccceec
Q 044048 1 MGATATGKTKLSIDLAIHFS--GEAINSDKIQVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~--~eiIs~Ds~QvYk 33 (269)
+||+|||||+||+.+|+.+| .++++..+-.||.
T Consensus 56 aGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 56 AGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp EE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred eCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 49999999999999999997 5677776666665
No 189
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.05 E-value=0.02 Score=52.75 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=65.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
.||||+|||.+|.+||-..+.+++.+-+-++ .++|+-++.+-|.++
T Consensus 157 yGppGTGKTm~Akalane~kvp~l~vkat~l----------------------------------iGehVGdgar~Ihel 202 (368)
T COG1223 157 YGPPGTGKTMMAKALANEAKVPLLLVKATEL----------------------------------IGEHVGDGARRIHEL 202 (368)
T ss_pred ECCCCccHHHHHHHHhcccCCceEEechHHH----------------------------------HHHHhhhHHHHHHHH
Confidence 4999999999999999999999988766441 344445555555544
Q ss_pred H--hcCCceEEEcc------------------cHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHHHHHc
Q 044048 81 I--ENGHLPIIVGG------------------SNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDKMVET 140 (269)
Q Consensus 81 ~--~~~~~pIivGG------------------t~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~ 140 (269)
. ++.-.|.|+== -.=-++|||..++ ....+...|.|.-.-.++.|..-|..|++.=|+=
T Consensus 203 y~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD-gi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF 281 (368)
T COG1223 203 YERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD-GIKENEGVVTIAATNRPELLDPAIRSRFEEEIEF 281 (368)
T ss_pred HHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc-CcccCCceEEEeecCChhhcCHHHHhhhhheeee
Confidence 2 23445555500 0001222222111 1123455677776667889999999998877764
Q ss_pred Cc
Q 044048 141 GL 142 (269)
Q Consensus 141 Gl 142 (269)
-|
T Consensus 282 ~L 283 (368)
T COG1223 282 KL 283 (368)
T ss_pred eC
Confidence 33
No 190
>PRK05642 DNA replication initiation factor; Validated
Probab=96.02 E-value=0.028 Score=50.12 Aligned_cols=119 Identities=10% Similarity=0.114 Sum_probs=62.4
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCccceecCCccccCCCC-HhhhcCCCceecccCCCCCCCCHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDKIQVYKGLDIATNKVT-ESERQGVPHHLLGFVDPEADYPVEEFCEHAL 74 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~QvYk~l~I~Takpt-~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~ 74 (269)
.||+|||||.|+..++..+ .+..++++.+.-+ . +. .+....++.-++|-++... .-..+....-
T Consensus 51 ~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--~------~~~~~~~~~~d~LiiDDi~~~~--~~~~~~~~Lf 120 (234)
T PRK05642 51 WGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--G------PELLDNLEQYELVCLDDLDVIA--GKADWEEALF 120 (234)
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--h------HHHHHhhhhCCEEEEechhhhc--CChHHHHHHH
Confidence 4999999999999987543 3446666553311 0 01 1112334444566555322 1234555566
Q ss_pred HHHHHHHhcCCceEEEcccH--HHHHHHHcchhhhhccccce-EEEEEeC-CHHHHHHHHHHHH
Q 044048 75 RAIDKIIENGHLPIIVGGSN--TYIEALVEDSIINFRANYDC-CFIWMDV-DPLVLYKYVGIRV 134 (269)
Q Consensus 75 ~~i~~i~~~~~~pIivGGt~--~Y~~~ll~g~~~~~~~~~~~-~~~~l~~-~~e~L~~Ri~~Rv 134 (269)
.+++.+..+|+ +|+++++. .++..+. ..+..|+.. .++-+.+ +.+.+.+-+..|+
T Consensus 121 ~l~n~~~~~g~-~ilits~~~p~~l~~~~----~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 121 HLFNRLRDSGR-RLLLAASKSPRELPIKL----PDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HHHHHHHhcCC-EEEEeCCCCHHHcCccC----ccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 77777777777 67776662 2221111 122334332 3344666 4556666555554
No 191
>COG4639 Predicted kinase [General function prediction only]
Probab=95.99 E-value=0.034 Score=47.25 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=62.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|+.||||||+|.+.- .+.++||+|+++.=.| +..-+|.. .=+-.+--+.+...++.-
T Consensus 8 ~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg------~~~~~e~s--------------qk~~~~~~~~l~~~l~qr 65 (168)
T COG4639 8 RGASGSGKSTFAKENF--LQNYVLSLDDLRLLLG------VSASKENS--------------QKNDELVWDILYKQLEQR 65 (168)
T ss_pred ecCCCCchhHHHHHhC--CCcceecHHHHHHHhh------hchhhhhc--------------cccHHHHHHHHHHHHHHH
Confidence 5999999999987753 3579999999884333 11111110 012222334555666666
Q ss_pred HhcCCceEEEcccHHH---HHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTY---IEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y---~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
..+|+..|+- .|++- .+-+++ .. -.-.+....++++.|.+.+.+|...|
T Consensus 66 l~~Gk~tiid-Atn~rr~~r~~l~~-La--~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 66 LRRGKFTIID-ATNLRREDRRKLID-LA--KAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred HHcCCeEEEE-cccCCHHHHHHHHH-HH--HHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 7899988776 34321 111110 00 01135567799999999999996433
No 192
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.99 E-value=0.039 Score=53.83 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=70.0
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCe--eeeCCccceecCC-ccccCCCCHhhh----cCCCceecccCCCCCCCCHHH
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGE--AINSDKIQVYKGL-DIATNKVTESER----QGVPHHLLGFVDPEADYPVEE 68 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~e--iIs~Ds~QvYk~l-~I~Takpt~~e~----~~v~hhl~~~~~~~~~~~~~~ 68 (269)
.||+|+|||.|+..+|..+ +.. .++++.+ ...+ .-.- +.+.++. ..+.=-++|-++.-. .-..
T Consensus 154 ~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~dlLiiDDi~~l~--~~~~ 228 (450)
T PRK00149 154 YGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF--TNDFVNALR-NNTMEEFKEKYRSVDVLLIDDIQFLA--GKER 228 (450)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHHH-cCcHHHHHHHHhcCCEEEEehhhhhc--CCHH
Confidence 4999999999999999876 333 4454432 1111 0000 0111111 122222444443211 1111
Q ss_pred HHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccce-EEEEEeCC-HHHHHHHHHHHHHHHHHcCcHHHH
Q 044048 69 FCEHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDC-CFIWMDVD-PLVLYKYVGIRVDKMVETGLVDEV 146 (269)
Q Consensus 69 f~~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~-~~~~l~~~-~e~L~~Ri~~Rv~~Ml~~Gll~Ev 146 (269)
..+.....++.+.++|+ +|+++++... . .+.+....+..++.. .++-+.+| .+.+.+-+.+++... .--+-+|+
T Consensus 229 ~~~~l~~~~n~l~~~~~-~iiits~~~p-~-~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~-~~~l~~e~ 304 (450)
T PRK00149 229 TQEEFFHTFNALHEAGK-QIVLTSDRPP-K-ELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE-GIDLPDEV 304 (450)
T ss_pred HHHHHHHHHHHHHHCCC-cEEEECCCCH-H-HHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc-CCCCCHHH
Confidence 23445566777777777 5566554321 1 111111233344432 45566554 455555666665541 22367888
Q ss_pred HhhcCC
Q 044048 147 RDMFDP 152 (269)
Q Consensus 147 ~~l~~~ 152 (269)
.+++..
T Consensus 305 l~~ia~ 310 (450)
T PRK00149 305 LEFIAK 310 (450)
T ss_pred HHHHHc
Confidence 777755
No 193
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.014 Score=56.04 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=23.9
Q ss_pred CCCCcCchhHHHHHHHHHc----C---CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF----S---GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~---~eiIs~Ds~ 29 (269)
+||||+|||+++..||..+ | .-+|.+|..
T Consensus 143 vGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 143 MGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 5999999999999999753 3 247888886
No 194
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.95 E-value=0.014 Score=57.89 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~ 34 (269)
.||+|||||.+|..+|..++.+++..|.-.++.+
T Consensus 265 ~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 265 VGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 4999999999999999999999999887555543
No 195
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0049 Score=59.98 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceec
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk 33 (269)
+||||||||-||.-||+-++.+|+=||--++=+
T Consensus 232 lGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQ 264 (564)
T KOG0745|consen 232 LGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQ 264 (564)
T ss_pred ECCCCCchhHHHHHHHHHhCCCeEEecccchhh
Confidence 599999999999999999999999999877644
No 196
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.91 E-value=0.0051 Score=59.69 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=25.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
.||||||||++|..||+.++.+++.+|.-.
T Consensus 122 ~GP~GsGKT~lAraLA~~l~~pf~~~da~~ 151 (413)
T TIGR00382 122 IGPTGSGKTLLAQTLARILNVPFAIADATT 151 (413)
T ss_pred ECCCCcCHHHHHHHHHHhcCCCeEEechhh
Confidence 499999999999999999998877666543
No 197
>PRK15453 phosphoribulokinase; Provisional
Probab=95.90 E-value=0.0054 Score=56.72 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=28.5
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceec
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk 33 (269)
+|++||||||++..|++.++ ..+|+.|+.+-|-
T Consensus 11 tG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~yd 48 (290)
T PRK15453 11 TGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYT 48 (290)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccC
Confidence 59999999999999998774 5689999988663
No 198
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.89 E-value=0.075 Score=46.17 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=53.1
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
.|.+||||||+|.+|++++- ..++..|-+ .|.|-. +--||-.+=.+..++
T Consensus 29 TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv---------------------R~gL~~----dLgFs~edR~eniRR 83 (197)
T COG0529 29 TGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV---------------------RHGLNR----DLGFSREDRIENIRR 83 (197)
T ss_pred ecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH---------------------hhcccC----CCCCChHHHHHHHHH
Confidence 48999999999999999873 234444443 233221 124566655555544
Q ss_pred HH--HHHHhcCCceEEEc-ccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHH
Q 044048 76 AI--DKIIENGHLPIIVG-GSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKY 129 (269)
Q Consensus 76 ~i--~~i~~~~~~pIivG-Gt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~R 129 (269)
.- ..++.+..+.++|- =|. |-.. ..........-++.=+|+++|-++..+|
T Consensus 84 vaevAkll~daG~iviva~ISP-~r~~--R~~aR~~~~~~~FiEVyV~~pl~vce~R 137 (197)
T COG0529 84 VAEVAKLLADAGLIVIVAFISP-YRED--RQMARELLGEGEFIEVYVDTPLEVCERR 137 (197)
T ss_pred HHHHHHHHHHCCeEEEEEeeCc-cHHH--HHHHHHHhCcCceEEEEeCCCHHHHHhc
Confidence 32 23444444455551 121 1000 0000011112356778999988776655
No 199
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.84 E-value=0.031 Score=51.40 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||++|..+|+.+
T Consensus 64 ~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 64 TGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4999999999998888865
No 200
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.0073 Score=58.77 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=24.5
Q ss_pred CCCCcCchhHHHHHHHHHc----C--CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHF----S--GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~--~eiIs~Ds~Q 30 (269)
+|||||||||++..||..+ | .-+|++|..+
T Consensus 229 vGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 229 VGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 5999999999999999754 2 4578889844
No 201
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.80 E-value=0.0059 Score=56.12 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=28.7
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~ 34 (269)
+|++|||||+++..|++.++ ..+|+.|++.-|..
T Consensus 5 tG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r 43 (277)
T cd02029 5 TGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYER 43 (277)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCc
Confidence 59999999999999998774 46999999876544
No 202
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.79 E-value=0.044 Score=54.61 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=20.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 49 ~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 49 TGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred ECCCCCCHHHHHHHHHHHhcCc
Confidence 4999999999999999999875
No 203
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.79 E-value=0.0064 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
.||+|||||+||..||+.+|.+++
T Consensus 27 ~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 27 RGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCEE
Confidence 499999999999999999987655
No 204
>PRK13974 thymidylate kinase; Provisional
Probab=95.67 E-value=0.04 Score=48.27 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=18.4
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.|+.||||||++..|++.+.
T Consensus 9 eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 9 EGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 39999999999999999985
No 205
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.66 E-value=0.064 Score=52.43 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=17.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|+|||.|+..+|..+
T Consensus 136 yG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 136 YGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred EcCCCCcHHHHHHHHHHHH
Confidence 4999999999999999874
No 206
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.66 E-value=0.015 Score=51.40 Aligned_cols=127 Identities=10% Similarity=0.117 Sum_probs=63.3
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCccceecCC-ccc-cCCCC--HhhhcCCCceecccCCCCCCCCHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDKIQVYKGL-DIA-TNKVT--ESERQGVPHHLLGFVDPEADYPVEEFCE 71 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~QvYk~l-~I~-Takpt--~~e~~~v~hhl~~~~~~~~~~~~~~f~~ 71 (269)
.||+|+|||.|..+++..+ +..|+-.++-+..+.+ +.. .++++ .+....++--++|-++.- -+-..+.+
T Consensus 40 ~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l--~~~~~~q~ 117 (219)
T PF00308_consen 40 YGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFL--AGKQRTQE 117 (219)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGG--TTHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhh--cCchHHHH
Confidence 4999999999999997654 3345554443433322 111 11111 122344444455555432 24455778
Q ss_pred HHHHHHHHHHhcCCceEEEcccH-HHHHHHHcchhhhhccccc-eEEEEEeCCHHHHHHHHHHH
Q 044048 72 HALRAIDKIIENGHLPIIVGGSN-TYIEALVEDSIINFRANYD-CCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 72 ~a~~~i~~i~~~~~~pIivGGt~-~Y~~~ll~g~~~~~~~~~~-~~~~~l~~~~e~L~~Ri~~R 133 (269)
..-..++.+..+|+..|+.+... .-+ .+....+..|+. ...+.|.+|.+..+.+|-++
T Consensus 118 ~lf~l~n~~~~~~k~li~ts~~~P~~l----~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 118 ELFHLFNRLIESGKQLILTSDRPPSEL----SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp HHHHHHHHHHHTTSEEEEEESS-TTTT----TTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCeEEEEeCCCCccc----cccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 88888899989998555555331 111 111112223332 34566776665555544443
No 207
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.08 Score=54.30 Aligned_cols=21 Identities=38% Similarity=0.387 Sum_probs=19.8
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||.|+|||++|..||+.+++
T Consensus 44 tGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 44 TGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ECCCCCCHHHHHHHHHHHhcC
Confidence 499999999999999999986
No 208
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.62 E-value=0.0067 Score=58.48 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=25.9
Q ss_pred CCCCcCchhHHHHHHHHHcC-------CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-------GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-------~eiIs~Ds~Q 30 (269)
+||||+||||--..||.++. .-||+.|+..
T Consensus 209 VGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 209 VGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred ECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
Confidence 69999999999999999875 3599999854
No 209
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.59 E-value=0.0084 Score=55.11 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=23.6
Q ss_pred CCCCcCchhHHHHHHHHHc----C---CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF----S---GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~---~eiIs~Ds~ 29 (269)
+|||||||||++..||..+ + .-+|++|..
T Consensus 200 vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 200 VGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 5999999999999998765 2 248888873
No 210
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=95.55 E-value=0.04 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=19.5
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHH
Q 044048 113 DCCFIWMDVDPLVLYKYVGIRVD 135 (269)
Q Consensus 113 ~~~~~~l~~~~e~L~~Ri~~Rv~ 135 (269)
+-.+|+|++++++..+|+..|-.
T Consensus 119 PDl~~~Ldv~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 119 PDLTFFLDVDPEEALKRIAKRGE 141 (186)
T ss_dssp -SEEEEEECCHHHHHHHHHHTSS
T ss_pred CCEEEEEecCHHHHHHHHHcCCc
Confidence 45789999999999999999853
No 211
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0084 Score=56.80 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
+||||+|||.+|..||+-.|+++|-+-.
T Consensus 56 IGpTGVGKTEIARRLAkl~~aPFiKVEA 83 (444)
T COG1220 56 IGPTGVGKTEIARRLAKLAGAPFIKVEA 83 (444)
T ss_pred ECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 5999999999999999999999886543
No 212
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.051 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=20.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||+|+|||++|..+|+.++.+
T Consensus 42 ~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 42 AGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred ECCCCCCHHHHHHHHHHHhccc
Confidence 4999999999999999998763
No 213
>PHA02244 ATPase-like protein
Probab=95.44 E-value=0.0096 Score=57.06 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~D 27 (269)
.||||||||+||..+|..++.+++.++
T Consensus 125 ~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 125 KGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 499999999999999999998877665
No 214
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.0091 Score=57.54 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=23.8
Q ss_pred CCCCcCchhHHHHHHHHHcC---------CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFS---------GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~---------~eiIs~Ds~ 29 (269)
+||||+||||.+..||..+. .-+|++|..
T Consensus 180 vGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 180 VGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred ECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 59999999999999998652 348888863
No 215
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.34 E-value=0.012 Score=56.10 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=25.3
Q ss_pred CCCCcCchhHHHHHHHHHcC--CeeeeCCccceec
Q 044048 1 MGATATGKTKLSIDLAIHFS--GEAINSDKIQVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~--~eiIs~Ds~QvYk 33 (269)
+||+|||||+||+.+|+.+| .++++.-.-.+|.
T Consensus 71 ~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 71 VGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred ECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 59999999999999999997 3455544444554
No 216
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=95.31 E-value=0.011 Score=50.45 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=60.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhh-cCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESER-QGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~-~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
.|+-=||||+.|-.||...++.+ +-|.|++|...|+ ..|.||-- .-|..=.++..+.+.+ ..+..
T Consensus 6 tGgaRSGKS~~AE~la~~~~~~v-----------~YvAT~~a~D~Em~~RI~~Hr~--rRp~~W~tvE~~~~l~-~~L~~ 71 (175)
T COG2087 6 TGGARSGKSSFAEALAGESGGQV-----------LYVATGRAFDDEMQERIAHHRA--RRPEHWRTVEAPLDLA-TLLEA 71 (175)
T ss_pred ecCccCCchHHHHHHHHhhCCce-----------EEEEecCCCCHHHHHHHHHHHh--cCCCcceEEeccccHH-HHHHh
Confidence 48888999999999999977766 3489999997776 56888855 2333222333333333 33343
Q ss_pred HHhcCCceEEEcccHHHHHHHHc
Q 044048 80 IIENGHLPIIVGGSNTYIEALVE 102 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~ 102 (269)
..+ +.-||+|.+-++++..++.
T Consensus 72 ~~~-~~~~VLvDcLt~wvtNll~ 93 (175)
T COG2087 72 LIE-PGDVVLVDCLTLWVTNLLF 93 (175)
T ss_pred ccc-CCCEEEEEcHHHHHHHHHh
Confidence 323 3349999999999988887
No 217
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.30 E-value=0.059 Score=51.71 Aligned_cols=143 Identities=16% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCe--eeeCCccceecCCccccCCCCHhh----hcCCCceecccCCCCCCCCHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGE--AINSDKIQVYKGLDIATNKVTESE----RQGVPHHLLGFVDPEADYPVEEF 69 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~e--iIs~Ds~QvYk~l~I~Takpt~~e----~~~v~hhl~~~~~~~~~~~~~~f 69 (269)
.||+|+|||.|+..++..+ +.. .|+++.+ ...+--.-...+.++ ...+.--++|-++.-. .-...
T Consensus 142 ~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~--~~~~~ 217 (405)
T TIGR00362 142 YGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF--TNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLA--GKERT 217 (405)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH--HHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhc--CCHHH
Confidence 4999999999999999865 333 3444332 111100000001111 1222223444443211 11112
Q ss_pred HHHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccce-EEEEEeCCH-HHHHHHHHHHHHHHHHcCcHHHHH
Q 044048 70 CEHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDC-CFIWMDVDP-LVLYKYVGIRVDKMVETGLVDEVR 147 (269)
Q Consensus 70 ~~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~-~~~~l~~~~-e~L~~Ri~~Rv~~Ml~~Gll~Ev~ 147 (269)
.+.....++.+.++++ +|++.++... . .+.+....+..++.. ..+.+.+|. +.+.+-+.+++... .--+-+|+.
T Consensus 218 ~~~l~~~~n~~~~~~~-~iiits~~~p-~-~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~-~~~l~~e~l 293 (405)
T TIGR00362 218 QEEFFHTFNALHENGK-QIVLTSDRPP-K-ELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEE-GLELPDEVL 293 (405)
T ss_pred HHHHHHHHHHHHHCCC-CEEEecCCCH-H-HHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHc-CCCCCHHHH
Confidence 3344566667767776 5566554321 1 111111233344443 456665544 45555555555442 122345555
Q ss_pred hhcC
Q 044048 148 DMFD 151 (269)
Q Consensus 148 ~l~~ 151 (269)
+++.
T Consensus 294 ~~ia 297 (405)
T TIGR00362 294 EFIA 297 (405)
T ss_pred HHHH
Confidence 5543
No 218
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.29 E-value=0.09 Score=52.44 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=20.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 44 ~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 44 TGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC
Confidence 4999999999999999999875
No 219
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=95.28 E-value=0.0097 Score=52.48 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=27.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc--ceec
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI--QVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~--QvYk 33 (269)
.|-+|||||+++..+- ++|.+||++|.| ||++
T Consensus 7 TGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~ 40 (225)
T KOG3220|consen 7 TGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVE 40 (225)
T ss_pred ecccccChHHHHHHHH-HcCCcEecHHHHHHHHhc
Confidence 4889999999998887 889999999986 4444
No 220
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.28 E-value=0.051 Score=48.47 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=18.7
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|||||+|+..++..+.
T Consensus 49 ~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 49 TGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EcCCCCCHHHHHHHHHHhcC
Confidence 59999999999999999886
No 221
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.27 E-value=0.036 Score=53.31 Aligned_cols=34 Identities=15% Similarity=0.022 Sum_probs=30.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~ 34 (269)
.||+|+|||.+|..+|+.+|+++|.++.-.++..
T Consensus 154 ~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 154 WGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred eCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 4999999999999999999999999988776654
No 222
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.013 Score=56.92 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~ 29 (269)
+|||||||||++..||..+- .-+|++|..
T Consensus 247 VGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 59999999999999997662 347788753
No 223
>PRK07933 thymidylate kinase; Validated
Probab=95.20 E-value=0.096 Score=46.09 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=19.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHH
Q 044048 113 DCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 113 ~~~~~~l~~~~e~L~~Ri~~R 133 (269)
+-+.|+|+.|+++..+|+.+|
T Consensus 133 PDl~i~Ldv~~e~a~~Ri~~R 153 (213)
T PRK07933 133 PDLQVLLDVPVELAAERARRR 153 (213)
T ss_pred CCEEEEecCCHHHHHHHHHhh
Confidence 458899999999999999988
No 224
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.20 E-value=0.026 Score=49.07 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+||..+++..
T Consensus 44 ~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 44 WGESGSGKSHLLQAACAAA 62 (226)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999875
No 225
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.11 E-value=0.11 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=20.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..||+.++++
T Consensus 43 ~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 43 SGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred ECCCCCCHHHHHHHHHHHhCcc
Confidence 4999999999999999999864
No 226
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.09 E-value=0.17 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 41 ~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 41 VGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred ECCCCccHHHHHHHHHHHHcCc
Confidence 4999999999999999998764
No 227
>PTZ00202 tuzin; Provisional
Probab=95.08 E-value=0.03 Score=55.15 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=46.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||.|+|||+|...++..++.. |+|-+.. + .+|. -..++.-+.....+.-.+..+...+.+.++
T Consensus 292 tG~~G~GKTTLlR~~~~~l~~~-------qL~vNpr-g-----~eEl---Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~ 355 (550)
T PTZ00202 292 TGFRGCGKSSLCRSAVRKEGMP-------AVFVDVR-G-----TEDT---LRSVVKALGVPNVEACGDLLDFISEACRRA 355 (550)
T ss_pred ECCCCCCHHHHHHHHHhcCCce-------EEEECCC-C-----HHHH---HHHHHHHcCCCCcccHHHHHHHHHHHHHHH
Confidence 5999999999999999888733 5555543 2 2222 122333344333455555556666666666
Q ss_pred Hhc-CCceEEE
Q 044048 81 IEN-GHLPIIV 90 (269)
Q Consensus 81 ~~~-~~~pIiv 90 (269)
... |+.||++
T Consensus 356 ~~e~GrtPVLI 366 (550)
T PTZ00202 356 KKMNGETPLLV 366 (550)
T ss_pred HHhCCCCEEEE
Confidence 555 9999887
No 228
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.08 E-value=0.013 Score=60.90 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=24.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~D 27 (269)
+||||||||.+|..||+.++.++|-+|
T Consensus 494 ~GP~GvGKT~lAk~LA~~l~~~~i~id 520 (758)
T PRK11034 494 AGPTGVGKTEVTVQLSKALGIELLRFD 520 (758)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcEEee
Confidence 599999999999999999998877666
No 229
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.02 E-value=0.014 Score=48.52 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=18.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
+|+.|||||||+.+|++. |..+|
T Consensus 5 ~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 5 TGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp E--TTSHHHHHHHHHHHH-T-EEE
T ss_pred ECCCCCCHHHHHHHHHHc-CCeEE
Confidence 499999999999999999 77777
No 230
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.01 E-value=0.044 Score=53.47 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=39.0
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCCHhhhc----CCC-ceecccCCCCCCCCHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVTESERQ----GVP-HHLLGFVDPEADYPVEEFC 70 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt~~e~~----~v~-hhl~~~~~~~~~~~~~~f~ 70 (269)
+|++|||||||+..|...+. ..+|+.|.+-+ +.+|+. ..| |.|+...++..++++.--.
T Consensus 218 sG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL-----------t~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~ 286 (460)
T PLN03046 218 SAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL-----------TAEGQAELRERNPGNALLELRGNAGSHDLQFSV 286 (460)
T ss_pred ECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC-----------ChHHHHHHHhhCccchhhcccCCCccccHhhHH
Confidence 59999999999999987662 46789999541 133332 234 5577776665555554333
Q ss_pred H
Q 044048 71 E 71 (269)
Q Consensus 71 ~ 71 (269)
+
T Consensus 287 e 287 (460)
T PLN03046 287 E 287 (460)
T ss_pred H
Confidence 3
No 231
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.98 E-value=0.015 Score=54.70 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=21.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
.||+|||||+++..||+.+|.+++
T Consensus 70 ~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 70 QGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred EeCCCChHHHHHHHHHHHHCCCeE
Confidence 499999999999999999998755
No 232
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.16 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..||+.++++
T Consensus 44 tGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 44 TGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred ECCCCCCHHHHHHHHHHhccCc
Confidence 5999999999999999999886
No 233
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.92 E-value=0.12 Score=49.93 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=59.2
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCC--c--cc----cCC-CCHhhhcCCCceecccCCCCCCCCH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGL--D--IA----TNK-VTESERQGVPHHLLGFVDPEADYPV 66 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l--~--I~----Tak-pt~~e~~~v~hhl~~~~~~~~~~~~ 66 (269)
+||..||||||+.-||-++. .-||.+|-=| .++ | |. ++. ++.+|+.-..|.+++-.+|.. ..
T Consensus 79 vG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ--~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP~~--~~ 154 (398)
T COG1341 79 VGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQ--SEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISPQG--FP 154 (398)
T ss_pred ECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCC--cccCCCceEEeecccCCCCCHHHcCccceEEEeccCCCC--Ch
Confidence 59999999999999998875 4699999887 432 1 22 222 237777777788999999976 56
Q ss_pred HHHHHHHHHHHHHHHhc
Q 044048 67 EEFCEHALRAIDKIIEN 83 (269)
Q Consensus 67 ~~f~~~a~~~i~~i~~~ 83 (269)
..|..-+.++++...+.
T Consensus 155 ~~~i~~v~rL~~~a~~~ 171 (398)
T COG1341 155 GRYIAGVARLVDLAKKE 171 (398)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 77888888887776554
No 234
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.91 E-value=0.015 Score=50.52 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.9
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|||||||||+...|+..++
T Consensus 7 ~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 7 TGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred ECCCCCCHHHHHHHHHHHhh
Confidence 59999999999999888775
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.89 E-value=0.02 Score=46.07 Aligned_cols=19 Identities=42% Similarity=0.800 Sum_probs=17.3
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|+|||+++..++...
T Consensus 5 ~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 5 FGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 5999999999999998876
No 236
>PRK10867 signal recognition particle protein; Provisional
Probab=94.88 E-value=0.039 Score=53.92 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=23.5
Q ss_pred CCCCcCchhHHHHHHHHHc----C--CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF----S--GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~--~eiIs~Ds~ 29 (269)
+||+||||||++..||..+ | .-+|++|..
T Consensus 106 vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 106 VGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 5999999999988888754 2 358999973
No 237
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.87 E-value=0.016 Score=59.98 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~D 27 (269)
+||||||||.||..||+.++..++..|
T Consensus 490 ~Gp~GvGKT~lA~~la~~l~~~~~~~d 516 (731)
T TIGR02639 490 TGPTGVGKTELAKQLAEALGVHLERFD 516 (731)
T ss_pred ECCCCccHHHHHHHHHHHhcCCeEEEe
Confidence 599999999999999999988777666
No 238
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.86 E-value=0.018 Score=56.10 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=25.1
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~Ds~Q 30 (269)
+||+||||||++..||..+ | .-+|++|..+
T Consensus 106 vG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 106 VGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 5999999999999999765 3 4689999743
No 239
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.86 E-value=0.17 Score=48.73 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 44 ~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 44 SGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC
Confidence 4999999999999999999875
No 240
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.86 E-value=0.014 Score=55.58 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.2
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+||+|||||+||..||+.++.
T Consensus 84 ~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 84 LGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred ECCCCCCHHHHHHHHHHHHhh
Confidence 599999999999999999854
No 241
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.84 E-value=0.018 Score=55.31 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=26.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
.||+|||||.+|..+|..++..++.++.-.+
T Consensus 171 ~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 171 YGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 4999999999999999999988777655443
No 242
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.79 E-value=0.014 Score=46.12 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=17.3
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.||+|+|||+++..+++.+.
T Consensus 10 ~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 10 SGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp EE-TTSSHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHhH
Confidence 49999999999999999873
No 243
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.02 Score=55.30 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=24.2
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~Q 30 (269)
+|||||||||++..||..+ ..-+|++|..+
T Consensus 212 vGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 212 IGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 5999999999999999765 23478888653
No 244
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.022 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=22.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINS 26 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~ 26 (269)
.||+|+||||||.-||..++.+++-.
T Consensus 54 ~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 54 WGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred ECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 49999999999999999999875443
No 245
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=94.75 E-value=0.017 Score=60.81 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=29.2
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCccceecCC
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDKIQVYKGL 35 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l 35 (269)
||.||||||+|..||++++..+|+.+. +||.+
T Consensus 41 G~~gsGKst~~~~la~~l~~~~~~~g~--~yRa~ 72 (863)
T PRK12269 41 GPAGSGKSSVCRLLASRLGAQCLNTGS--FYRAF 72 (863)
T ss_pred CCCCCCHHHHHHHHHHHhCCcEEeHHH--HHHHH
Confidence 999999999999999999999999998 46754
No 246
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.74 E-value=0.022 Score=53.92 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=25.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
.||+|||||++|..+|..++..++.+..-+
T Consensus 162 ~GppGtGKT~lakaia~~l~~~~~~v~~~~ 191 (364)
T TIGR01242 162 YGPPGTGKTLLAKAVAHETNATFIRVVGSE 191 (364)
T ss_pred ECCCCCCHHHHHHHHHHhCCCCEEecchHH
Confidence 499999999999999999998877766544
No 247
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.74 E-value=0.084 Score=48.82 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~Q 30 (269)
+||+|||||+|...|+..+ ...+|++|.-.
T Consensus 40 ~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 40 TGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 5999999999999988865 34588888643
No 248
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.73 E-value=0.19 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||+|+|||++|..+|+.+.++
T Consensus 42 ~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 42 SGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC
Confidence 4999999999999999998755
No 249
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.023 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
.||-|+||||||..||++++..++
T Consensus 10 ~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 10 EGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ecccccCHHHHHHHHHHHhCCcee
Confidence 399999999999999999987543
No 250
>PLN02796 D-glycerate 3-kinase
Probab=94.70 E-value=0.023 Score=54.00 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=25.6
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~Q 30 (269)
+||+|||||||+..|+..+. ..+|+.|.+-
T Consensus 106 ~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 106 SAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred ECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 59999999999999998875 3578889855
No 251
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.66 E-value=0.018 Score=56.09 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=23.2
Q ss_pred CCCCcCchhHHHHHHHHHc----C---CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF----S---GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~---~eiIs~Ds~ 29 (269)
+|||||||||++..||..+ + .-+|++|..
T Consensus 227 vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 227 VGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 5999999999999998654 2 358888884
No 252
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.66 E-value=0.037 Score=50.02 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=17.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||.|+..+|..+
T Consensus 105 ~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 105 SGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999987
No 253
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.64 E-value=0.18 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=20.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 41 ~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 41 SGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred ECCCCCCHHHHHHHHHHHhccc
Confidence 4999999999999999999864
No 254
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.021 Score=59.39 Aligned_cols=27 Identities=41% Similarity=0.539 Sum_probs=22.8
Q ss_pred CCCCcCchhHHHHHHHHHcCC---eeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG---EAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~---eiIs~D 27 (269)
+||||+|||.||..||..+.+ ..|..|
T Consensus 527 ~GPTGVGKTELAkaLA~~Lfg~e~aliR~D 556 (786)
T COG0542 527 LGPTGVGKTELAKALAEALFGDEQALIRID 556 (786)
T ss_pred eCCCcccHHHHHHHHHHHhcCCCccceeec
Confidence 599999999999999999863 466655
No 255
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.62 E-value=0.025 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEA 23 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ei 23 (269)
.||+|+|||+||..+|..++..+
T Consensus 36 ~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 36 YGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCE
Confidence 49999999999999999987653
No 256
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.19 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=20.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 43 ~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 43 TGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred ECCCCCCHHHHHHHHHHHhCCC
Confidence 4999999999999999999874
No 257
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.59 E-value=0.051 Score=53.06 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=24.0
Q ss_pred CCCCcCchhHHHHHHHHHc----C--CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF----S--GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~--~eiIs~Ds~ 29 (269)
+||+||||||++..||..+ | .-+|++|..
T Consensus 105 vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 105 VGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 5999999999999999874 1 358999974
No 258
>PRK13976 thymidylate kinase; Provisional
Probab=94.59 E-value=0.045 Score=48.18 Aligned_cols=20 Identities=40% Similarity=0.338 Sum_probs=18.2
Q ss_pred CCCcCchhHHHHHHHHHcCC
Q 044048 2 GATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~ 21 (269)
|+-||||||++..|++.+..
T Consensus 7 GiDGsGKsTq~~~L~~~L~~ 26 (209)
T PRK13976 7 GIDGSGKTTQSRLLAEYLSD 26 (209)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 88999999999999999853
No 259
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.58 E-value=0.023 Score=53.29 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~Ds~ 29 (269)
+||+||||||++..||..+ + .-++.+|..
T Consensus 120 vGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 120 VGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred ECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 5999999999999999876 2 246777763
No 260
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.56 E-value=0.063 Score=56.74 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=18.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|+|||+++..||..+
T Consensus 205 ~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 205 IGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999999987
No 261
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.56 E-value=0.19 Score=51.56 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 44 ~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 44 SGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred ECCCCCCHHHHHHHHHHhhhhc
Confidence 4999999999999999999886
No 262
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.52 E-value=0.025 Score=55.88 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=26.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
.||+|||||+|+..+|...+.+++.++.-.
T Consensus 94 ~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 94 VGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 499999999999999999999988877543
No 263
>PRK04195 replication factor C large subunit; Provisional
Probab=94.52 E-value=0.025 Score=55.68 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
.||+|+|||++|..||+.++.+++..+.
T Consensus 45 ~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 45 YGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 4999999999999999999988776543
No 264
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.48 E-value=0.026 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
.||+|+|||+||..+|..++..+.
T Consensus 57 ~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 57 YGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred ECCCCccHHHHHHHHHHHhCCCeE
Confidence 499999999999999999987654
No 265
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.45 E-value=0.024 Score=51.93 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=22.7
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~Ds 28 (269)
+||+|+||||++..||..+ | .-+|.+|.
T Consensus 78 ~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 78 VGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred ECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 5999999999999999876 2 23677775
No 266
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.45 E-value=0.024 Score=51.00 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~Q 30 (269)
+||.||||||+...+.+-+. .-|||.|.-.
T Consensus 2 iGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 2 IGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAV 36 (238)
T ss_dssp EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-
T ss_pred CCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHh
Confidence 59999999999999998774 3589988754
No 267
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.40 E-value=0.027 Score=44.03 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=33.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCce---ecccCCCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHH---LLGFVDPE 61 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hh---l~~~~~~~ 61 (269)
.||+|+|||+|+..||+.+.-.+-.- ..-.|-+..|..+-..|-.++ ++|-+...
T Consensus 4 ~G~~G~GKS~l~~~l~~~l~~~~~~~------~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 4 YGPPGIGKSTLAKELAKDLLKHIGEP------TKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhccC------CCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 49999999999999999885443111 112344445555555555554 45544443
No 268
>PRK08727 hypothetical protein; Validated
Probab=94.39 E-value=0.16 Score=45.20 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=16.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||.|+..++...
T Consensus 47 ~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 47 SGPAGTGKTHLALALCAAA 65 (233)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999986653
No 269
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=94.38 E-value=0.03 Score=48.03 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=29.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~ 34 (269)
.|++|+|||+||.+|.++ |...|+=|.+.+++.
T Consensus 24 ~G~SG~GKS~lAl~Li~r-Gh~lvaDD~v~i~~~ 56 (171)
T PF07475_consen 24 TGPSGIGKSELALELIKR-GHRLVADDRVEIRRI 56 (171)
T ss_dssp EESTTSSHHHHHHHHHHT-T-EEEESSEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHC-CCeEEeCCEEEEEEC
Confidence 499999999999999987 889999999999985
No 270
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.11 Score=44.60 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=17.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|++||||||+...+|..+
T Consensus 11 TG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 11 TGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eCCCCccHHHHHHHHHHHH
Confidence 4999999999999999765
No 271
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.36 E-value=0.18 Score=51.27 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=19.5
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||.|+|||++|..+|+.+++
T Consensus 44 ~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 44 SGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred ECCCCCCHHHHHHHHHHHhcC
Confidence 499999999999999999975
No 272
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.33 E-value=0.076 Score=50.09 Aligned_cols=19 Identities=47% Similarity=0.462 Sum_probs=17.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||||+|||.||..+|+.+
T Consensus 189 ~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 189 YGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 4999999999999999976
No 273
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.30 E-value=0.038 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
.||+|+|||+|+..+|+.++.+.+
T Consensus 49 ~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 49 EGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred ECCCCccHHHHHHHHHHHhCCCeE
Confidence 399999999999999999986544
No 274
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=94.28 E-value=0.035 Score=47.44 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=26.3
Q ss_pred CCCCcCchhHHHHHHHHHcC-CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-~eiIs~Ds~Q 30 (269)
+++-|+||||+|+.|+.-|| +-.|..|-+.
T Consensus 5 IAtiGCGKTTva~aL~~LFg~wgHvQnDnI~ 35 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEWGHVQNDNIT 35 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCCCccccCCCC
Confidence 47889999999999999999 8888888753
No 275
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.28 E-value=0.22 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 44 ~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 44 SGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred ECCCCCCHHHHHHHHHHHhCCC
Confidence 4999999999999999999885
No 276
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.27 E-value=0.031 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAIN 25 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs 25 (269)
+|++|||||||+..||+.+|...+.
T Consensus 225 ~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 225 LGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCeee
Confidence 5999999999999999999876544
No 277
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.22 E-value=0.033 Score=48.28 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=29.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcccee-cCCccccCCCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVY-KGLDIATNKVT 43 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvY-k~l~I~Takpt 43 (269)
.||+|||||+|-..+|. .||-||=.+| +|-++.|.+|.
T Consensus 35 tGPSG~GKStllk~va~-----Lisp~~G~l~f~Ge~vs~~~pe 73 (223)
T COG4619 35 TGPSGCGKSTLLKIVAS-----LISPTSGTLLFEGEDVSTLKPE 73 (223)
T ss_pred eCCCCccHHHHHHHHHh-----ccCCCCceEEEcCccccccChH
Confidence 59999999999998884 4666666554 58788886664
No 278
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.18 E-value=0.031 Score=54.69 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=24.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
.||+|||||++|..+|..++..++.++.
T Consensus 223 ~GPPGTGKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 223 YGPPGTGKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred ECCCCCCHHHHHHHHHHhhCCCEEEEec
Confidence 4999999999999999999988776554
No 279
>PRK06921 hypothetical protein; Provisional
Probab=94.14 E-value=0.052 Score=49.53 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||||+|||.|+..+|..+
T Consensus 123 ~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 123 LGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 4999999999999999875
No 280
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.13 E-value=0.024 Score=48.58 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||||+|||.||..+|..+
T Consensus 53 ~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 53 YGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred EhhHhHHHHHHHHHHHHHh
Confidence 4999999999999999764
No 281
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=94.09 E-value=0.41 Score=41.78 Aligned_cols=30 Identities=10% Similarity=0.267 Sum_probs=27.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+|++||||-|....++++++...+|+.-.-
T Consensus 14 lGGPGsgKgTqC~kiv~ky~ftHlSaGdLL 43 (195)
T KOG3079|consen 14 LGGPGSGKGTQCEKIVEKYGFTHLSAGDLL 43 (195)
T ss_pred EcCCCCCcchHHHHHHHHcCceeecHHHHH
Confidence 599999999999999999999999987654
No 282
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.05 E-value=0.087 Score=55.38 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=24.5
Q ss_pred CCCCcCchhHHHHHHHHHcC----------CeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFS----------GEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~----------~eiIs~Ds~Qv 31 (269)
+||+|+|||+++..||..+. ..|++.|.-.+
T Consensus 206 ~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l 246 (821)
T CHL00095 206 IGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL 246 (821)
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH
Confidence 59999999999999999863 46776665433
No 283
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=94.04 E-value=0.49 Score=44.31 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~ 34 (269)
.|+||+|||.|+..|+.. +..||.+.+..-|+|
T Consensus 133 ~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~hrG 165 (311)
T TIGR03167 133 GGMTGSGKTELLHALANA-GAQVLDLEGLANHRG 165 (311)
T ss_pred CCCCCcCHHHHHHHHhcC-CCeEEECCchHHhcC
Confidence 389999999999999877 788999999999998
No 284
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.04 E-value=0.077 Score=55.06 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=24.0
Q ss_pred CCCCcCchhHHHHHHHHHc----------CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF----------SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----------~~eiIs~Ds 28 (269)
+||+|+|||+++..||+++ +..+++.|.
T Consensus 209 ~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 209 VGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 5999999999999999987 567777773
No 285
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.04 E-value=0.035 Score=53.58 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=23.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
.||+|||||+||..+|+.++..++..+.
T Consensus 42 ~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 42 WGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 4999999999999999998877665443
No 286
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.035 Score=52.91 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=25.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~D 27 (269)
.||+|+|||.||.++|++-++..||++
T Consensus 133 ~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 133 YGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred cCCCCchHHHHHHHHHHHcCCCcceee
Confidence 599999999999999999999999964
No 287
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.02 E-value=0.031 Score=44.35 Aligned_cols=16 Identities=38% Similarity=0.717 Sum_probs=14.8
Q ss_pred CCCCcCchhHHHHHHH
Q 044048 1 MGATATGKTKLSIDLA 16 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA 16 (269)
+||+|||||+|+..+.
T Consensus 21 ~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 21 TGDSGIGKTELALELI 36 (107)
T ss_pred EcCCCCCHHHHHHHhh
Confidence 5999999999999987
No 288
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.98 E-value=0.038 Score=55.35 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCCCcCchhHHHHHHHHHc-------CCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHF-------SGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-------~~eiIs~Ds~Q 30 (269)
+||||+|||+++..||..+ ..-+|++|..+
T Consensus 356 VGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 356 VGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 5999999999999998753 23578888743
No 289
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.98 E-value=0.039 Score=53.71 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=24.0
Q ss_pred CCCCcCchhHHHHHHHHHc-------CCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHF-------SGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-------~~eiIs~Ds~Q 30 (269)
+||||+||||+...||..+ .+.+|.+|...
T Consensus 197 vGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 197 IGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 6999999999999998753 24577888854
No 290
>PRK09169 hypothetical protein; Validated
Probab=93.97 E-value=0.097 Score=59.42 Aligned_cols=104 Identities=12% Similarity=-0.057 Sum_probs=71.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceec-CCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYK-GLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk-~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+|+.|+|||+++..||+.++...+..|....-+ ++.|.. ..... . .|++.+...|.+
T Consensus 2116 IG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~r----IFa~e----------------G--~FRe~Eaa~V~D 2173 (2316)
T PRK09169 2116 EREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIAR----IQALR----------------G--LSPEQAAARVRD 2173 (2316)
T ss_pred eeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHH----HHHhc----------------C--chHHHHHHHHHH
Confidence 589999999999999999999999888755433 333321 11111 1 789999999999
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
+.. ..+.|-.||.......... .+ .-..+++|+..+.+.+.+|+.+.
T Consensus 2174 llr-~~vVLSTGGGav~~~enr~----~L--~~~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2174 ALR-WEVVLPAEGFGAAVEQARQ----AL--GAKGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred Hhc-CCeEEeCCCCcccCHHHHH----HH--HHCCEEEEEECCHHHHHHHhccC
Confidence 874 5555556666544333222 11 12347899999999999998755
No 291
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.039 Score=54.31 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=27.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
.||+|+|||.||.++|...+..+|+.|.-
T Consensus 282 ~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 282 YGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 49999999999999999999999998886
No 292
>PF13245 AAA_19: Part of AAA domain
Probab=93.86 E-value=0.042 Score=40.70 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+++.+++..+
T Consensus 16 ~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 3999999998877777665
No 293
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.86 E-value=0.035 Score=47.53 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=17.6
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||||||||||...|+..++
T Consensus 31 ~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 31 SGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred ECCCCCCHHHHHHHHHhhcC
Confidence 59999999999999987664
No 294
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.86 E-value=0.067 Score=48.39 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=30.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCC-CceecccCCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGV-PHHLLGFVDP 60 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v-~hhl~~~~~~ 60 (269)
+|++|||||+|...|-..+.- .|+.+=+.|..+..+--..+ |.|+.++.+.
T Consensus 19 IG~sGSGKT~li~~lL~~~~~---------~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~ 70 (241)
T PF04665_consen 19 IGKSGSGKTTLIKSLLYYLRH---------KFDHIFLITPEYNNEYYKYIWPDHIFKVFDK 70 (241)
T ss_pred ECCCCCCHHHHHHHHHHhhcc---------cCCEEEEEecCCchhhhhhcchhhccccccH
Confidence 599999999999999877543 33444455544433333333 3555554443
No 295
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.84 E-value=0.038 Score=54.72 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=23.0
Q ss_pred CCCCcCchhHHHHHHHHHc----C---CeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF----S---GEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~---~eiIs~Ds 28 (269)
+||||+||||++..||..+ | .-+|.+|.
T Consensus 262 vGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 262 MGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred ECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 6999999999999999765 2 23788887
No 296
>PLN02924 thymidylate kinase
Probab=93.76 E-value=0.12 Score=45.77 Aligned_cols=117 Identities=11% Similarity=0.148 Sum_probs=57.8
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCH-hhhcC-CCceeccc--CCCCC---CCCHHHHHHHHH
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTE-SERQG-VPHHLLGF--VDPEA---DYPVEEFCEHAL 74 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~-~e~~~-v~hhl~~~--~~~~~---~~~~~~f~~~a~ 74 (269)
|+-||||||++..|++.+...-+++ +.|..|+. ...+. ++-.+.+. .+|.. -|.+..+.. .
T Consensus 23 GiDGsGKsTq~~~L~~~l~~~g~~v----------~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~--~ 90 (220)
T PLN02924 23 GLDRSGKSTQCAKLVSFLKGLGVAA----------ELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEK--R 90 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCc----------eeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH--H
Confidence 8999999999999999996543322 12222321 00000 11112221 12211 133333332 2
Q ss_pred HHHHHHHhcCCceEEEcccHH--HHHHHHcchhhhh------ccccceEEEEEeCCHHHHHHHHH
Q 044048 75 RAIDKIIENGHLPIIVGGSNT--YIEALVEDSIINF------RANYDCCFIWMDVDPLVLYKYVG 131 (269)
Q Consensus 75 ~~i~~i~~~~~~pIivGGt~~--Y~~~ll~g~~~~~------~~~~~~~~~~l~~~~e~L~~Ri~ 131 (269)
..|....+.|++ ||+.-..+ +......|.+..| ..+.+-++++|++|+++..+|+.
T Consensus 91 ~~I~pal~~g~v-VI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 91 SLMERKLKSGTT-LVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHHHCCCE-EEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 345555677885 55544311 0111122322111 01235688999999999998864
No 297
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=93.76 E-value=0.0098 Score=50.71 Aligned_cols=87 Identities=20% Similarity=0.288 Sum_probs=49.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhh-cCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESER-QGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~-~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+|...||||.+|-+||..++.+++ -|.|++|..+|+ ..|.+|.-.. |..=-++.... +..+++..
T Consensus 4 ~GG~rSGKS~~Ae~la~~~~~~~~-----------YiAT~~~~D~em~~RI~~H~~~R--~~~w~tiE~~~-~l~~~~~~ 69 (167)
T PF02283_consen 4 TGGARSGKSSFAERLALSFGGPVT-----------YIATARPFDEEMRERIARHRQRR--PKGWITIEEPR-DLAEALEE 69 (167)
T ss_dssp EESTTSSHHHHHHHHHTS--SCEE-----------EEESSHHHHHHHHHHHHHHHHHS--STCEEEEE-SS--GGGTS-T
T ss_pred eCCCCcchHHHHHHHHHhcCCCcE-----------EEeCCCCCCHHHHHHHHHHHHhC--CCCcEEEecch-hHHHHHHH
Confidence 489999999999999987765433 388999987776 4566664443 11100111111 11122222
Q ss_pred HHhcCCceEEEcccHHHHHHHHcc
Q 044048 80 IIENGHLPIIVGGSNTYIEALVED 103 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g 103 (269)
. ...-+|++.+-++++..++..
T Consensus 70 ~--~~~~~vLlDclt~wl~n~l~~ 91 (167)
T PF02283_consen 70 L--SPGDVVLLDCLTLWLANLLFA 91 (167)
T ss_dssp T--S-T-EEEEE-HHHHHHHHHHH
T ss_pred h--ccCCeEEEeCHHHHHHHHHHh
Confidence 1 113588888888888888765
No 298
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.76 E-value=0.045 Score=52.87 Aligned_cols=29 Identities=31% Similarity=0.304 Sum_probs=25.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
.||+|||||+||..+|..++..++.+..-
T Consensus 185 ~GppGTGKT~LAkalA~~l~~~fi~i~~s 213 (398)
T PTZ00454 185 YGPPGTGKTMLAKAVAHHTTATFIRVVGS 213 (398)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence 49999999999999999999887776543
No 299
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.21 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=20.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 44 ~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 44 TGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ECCCCCChHHHHHHHHHHhcCC
Confidence 4999999999999999999875
No 300
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.74 E-value=0.034 Score=45.68 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=16.7
Q ss_pred CCCcCchhHHHHHHHHHcCCeee
Q 044048 2 GATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiI 24 (269)
|++|+|||+++..||+.+++.+.
T Consensus 6 g~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 6 GVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp S---HHHHHHHHHHHHHTT--EE
T ss_pred CCCccHHHHHHHHHHHHcCCcee
Confidence 89999999999999999998754
No 301
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.73 E-value=0.044 Score=53.66 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=24.9
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~Q 30 (269)
+|++|||||+++..||..+. .-+|++|..+
T Consensus 101 vG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 101 VGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 59999999999999998762 4589999753
No 302
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.71 E-value=0.28 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=20.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||+++..||+.++++
T Consensus 44 tGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 44 TGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred ECCCCCCHHHHHHHHHHHhcCc
Confidence 4999999999999999999875
No 303
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.70 E-value=0.066 Score=39.11 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=26.1
Q ss_pred CCCcCchhHHHHHHHHHc---CCeeeeCCccceec
Q 044048 2 GATATGKTKLSIDLAIHF---SGEAINSDKIQVYK 33 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~---~~eiIs~Ds~QvYk 33 (269)
|..|+|||+++..||..+ |..++.+|...+..
T Consensus 6 g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d~iivD 40 (99)
T cd01983 6 GKGGVGKTTLAANLAAALAKRGKRVLLIDDYVLID 40 (99)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEECCEEEEe
Confidence 677999999999999987 67888888555554
No 304
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.49 Score=47.41 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||+|+|||++|..+|+.++++
T Consensus 44 ~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 44 TGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC
Confidence 4999999999999999999875
No 305
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.61 E-value=0.056 Score=44.51 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=24.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCe-eeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGE-AINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e-iIs~Ds~Q 30 (269)
.|+.|+|||+|+..+++.++.. -|++-++-
T Consensus 28 ~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~ 58 (133)
T TIGR00150 28 KGDLGAGKTTLVQGLLQGLGIQGNVTSPTFT 58 (133)
T ss_pred EcCCCCCHHHHHHHHHHHcCCCCcccCCCee
Confidence 4999999999999999999853 45555543
No 306
>PRK06526 transposase; Provisional
Probab=93.60 E-value=0.037 Score=50.27 Aligned_cols=19 Identities=47% Similarity=0.732 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||.||..|+...
T Consensus 104 ~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 104 LGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred EeCCCCchHHHHHHHHHHH
Confidence 5999999999999998654
No 307
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.042 Score=54.85 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=24.4
Q ss_pred CCCcCchhHHHHHHHHHcCCe---eeeCCccc
Q 044048 2 GATATGKTKLSIDLAIHFSGE---AINSDKIQ 30 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~e---iIs~Ds~Q 30 (269)
||.|||||+||..+|+.-+.+ |||.+.|-
T Consensus 545 Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~mi 576 (744)
T KOG0741|consen 545 GPPGSGKTALAAKIALSSDFPFVKIISPEDMI 576 (744)
T ss_pred cCCCCChHHHHHHHHhhcCCCeEEEeChHHcc
Confidence 999999999999999987765 66766654
No 308
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.57 E-value=0.16 Score=48.06 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|+|||+++..+++.+
T Consensus 61 ~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 61 YGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999876
No 309
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=93.54 E-value=0.027 Score=52.58 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=44.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecC-Cc--cccCCCCHhhhcCCCceecccCCCCCCCCHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKG-LD--IATNKVTESERQGVPHHLLGFVDPEADYPVEEFC 70 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~-l~--I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~ 70 (269)
.|++|+|||++|.+|-++ |...|+=|...+++. =+ +|+ ++..-+.-+.=.-+++++....|.++.++
T Consensus 152 ~G~sg~GKS~lal~Li~r-g~~lvaDD~~~~~~~~~~~L~g~--~p~~l~~~iEvRG~GIi~v~~~fG~~a~~ 221 (304)
T TIGR00679 152 TGKSGVGKSETALELINR-GHRLVADDAVEIYRLNGNRLFGR--AQELIKHFMEIRGLGIINVERLYGLGITR 221 (304)
T ss_pred EcCCCCCHHHHHHHHHHc-CCceeecCeEEEEEecCCEEEEe--CChhhCCcEEEeCcEEEEchhhcCcccee
Confidence 499999999999999977 888999999988875 23 554 33321222222245666665556555443
No 310
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.53 E-value=0.42 Score=48.87 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..||+.++++
T Consensus 44 ~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 44 TGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC
Confidence 4999999999999999999864
No 311
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.47 E-value=0.038 Score=52.42 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.7
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+|||||||||+...|+..++.
T Consensus 168 ~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 168 CGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred ECCCCccHHHHHHHHHcccCC
Confidence 599999999999999988753
No 312
>PF12846 AAA_10: AAA-like domain
Probab=93.46 E-value=0.055 Score=48.36 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=26.3
Q ss_pred CCCCcCchhHHHHHHHHH---cCCeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIH---FSGEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~---~~~eiIs~Ds~QvYk~ 34 (269)
+|+||||||+++..+... .|..++-.|.-.=|..
T Consensus 7 ~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 7 LGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 599999999999988874 4667777787654444
No 313
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.45 E-value=0.16 Score=53.76 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.5
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|+|||+++..||+.+.
T Consensus 214 vG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 214 TGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 59999999999999999974
No 314
>PHA02624 large T antigen; Provisional
Probab=93.45 E-value=0.059 Score=54.70 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=24.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINS 26 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~ 26 (269)
.||.|||||+|+..|++.++|.++|+
T Consensus 437 ~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 437 KGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 49999999999999999999998886
No 315
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.44 E-value=0.054 Score=54.16 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
.||+||||||...-||+.+|.+|+
T Consensus 51 tGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 51 TGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred ECCCCCCHHHHHHHHHHHhCCeeE
Confidence 499999999999999999998665
No 316
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.44 E-value=0.057 Score=49.65 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
.||+|+|||+++..+++.++..++
T Consensus 49 ~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 49 SPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred eCcCCCCHHHHHHHHHHHhCccce
Confidence 499999999999999999876544
No 317
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.43 E-value=0.43 Score=46.81 Aligned_cols=143 Identities=10% Similarity=0.137 Sum_probs=69.3
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCCccceecCC-ccccCCCCHhh----hcCCCceecccCCCCCCCCHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSDKIQVYKGL-DIATNKVTESE----RQGVPHHLLGFVDPEADYPVEEFCEH 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~Ds~QvYk~l-~I~Takpt~~e----~~~v~hhl~~~~~~~~~~~~~~f~~~ 72 (269)
.||+|+|||.|+..+|..+ +..++-+.+-..-..+ +-..+ ...++ ...++=-++|-++.-. .-..-.+.
T Consensus 147 ~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~-~~~~~f~~~~~~~dvLiIDDiq~l~--~k~~~qee 223 (445)
T PRK12422 147 FGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRS-GEMQRFRQFYRNVDALFIEDIEVFS--GKGATQEE 223 (445)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhc-chHHHHHHHcccCCEEEEcchhhhc--CChhhHHH
Confidence 4999999999999999865 3444333331111110 00000 11111 1222333455433211 01112334
Q ss_pred HHHHHHHHHhcCCceEEEcccHH--HHHHHHcchhhhhccccce-EEEEEeC-CHHHHHHHHHHHHHHHHHcCcHHHHHh
Q 044048 73 ALRAIDKIIENGHLPIIVGGSNT--YIEALVEDSIINFRANYDC-CFIWMDV-DPLVLYKYVGIRVDKMVETGLVDEVRD 148 (269)
Q Consensus 73 a~~~i~~i~~~~~~pIivGGt~~--Y~~~ll~g~~~~~~~~~~~-~~~~l~~-~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~ 148 (269)
....+..+...|+ +||.+++.. -+..+. ..+..|+.. ..+-+.+ +.+.+.+-|.++++.. .--+-+|+..
T Consensus 224 lf~l~N~l~~~~k-~IIlts~~~p~~l~~l~----~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~-~~~l~~evl~ 297 (445)
T PRK12422 224 FFHTFNSLHTEGK-LIVISSTCAPQDLKAME----ERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL-SIRIEETALD 297 (445)
T ss_pred HHHHHHHHHHCCC-cEEEecCCCHHHHhhhH----HHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHH
Confidence 4455666666776 566655421 122221 233344432 4455654 4566666676666552 2346788888
Q ss_pred hcCC
Q 044048 149 MFDP 152 (269)
Q Consensus 149 l~~~ 152 (269)
++..
T Consensus 298 ~la~ 301 (445)
T PRK12422 298 FLIE 301 (445)
T ss_pred HHHH
Confidence 6644
No 318
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.39 E-value=0.12 Score=49.60 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=17.7
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|||||||||+...|...++
T Consensus 155 ~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 155 CGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 59999999999999988763
No 319
>PRK12377 putative replication protein; Provisional
Probab=93.39 E-value=0.045 Score=49.60 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=17.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||.||..+|..+
T Consensus 107 ~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 107 SGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999987
No 320
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.37 E-value=0.17 Score=47.76 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=17.6
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|||||||||+...|...++
T Consensus 128 ~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 128 TGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred ECCCCCCHHHHHHHHHHhhC
Confidence 59999999999999988654
No 321
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.35 E-value=0.058 Score=46.93 Aligned_cols=19 Identities=42% Similarity=0.691 Sum_probs=17.1
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|++|||||+|+.++|...
T Consensus 25 ~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 25 YGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999765
No 322
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.35 E-value=0.41 Score=45.08 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+||+++|..+|+.+.++
T Consensus 28 ~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 28 HGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred ECCCCCCHHHHHHHHHHHHcCC
Confidence 4999999999999999999764
No 323
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.14 Score=51.29 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=59.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhh-----hcCCCc-eecccCCCC---CCCCHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESE-----RQGVPH-HLLGFVDPE---ADYPVEEFCE 71 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e-----~~~v~h-hl~~~~~~~---~~~~~~~f~~ 71 (269)
+||+|+|||-||.++|-.-+.++..+-.-+ |.+|-+|-+.-..-+ ....|. .+||.+|.- .+-+..+|.+
T Consensus 343 vGPPGTGKTlLARAvAGEA~VPFF~~sGSE-FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~k 421 (752)
T KOG0734|consen 343 VGPPGTGKTLLARAVAGEAGVPFFYASGSE-FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAK 421 (752)
T ss_pred eCCCCCchhHHHHHhhcccCCCeEeccccc-hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHH
Confidence 599999999999999999888877665444 445545443322222 245665 488887642 2334444655
Q ss_pred HHHH-HHHHH--HhcCCceEEEcccHH
Q 044048 72 HALR-AIDKI--IENGHLPIIVGGSNT 95 (269)
Q Consensus 72 ~a~~-~i~~i--~~~~~~pIivGGt~~ 95 (269)
.... .+-++ ++++.-.|++|.|++
T Consensus 422 qTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 422 QTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred HHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 5433 22232 567777888899976
No 324
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.055 Score=54.81 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=28.7
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCccceecCC
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDKIQVYKGL 35 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l 35 (269)
||+|+|||.||.++|..++.+++++-.=-|-.|+
T Consensus 230 GPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 230 GPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 9999999999999999999988877665555554
No 325
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=93.33 E-value=0.72 Score=43.82 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=28.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~ 34 (269)
.|+||||||++...|+.. +..||.+-+..-|+|
T Consensus 147 ~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehrG 179 (345)
T PRK11784 147 GGNTGSGKTELLQALANA-GAQVLDLEGLANHRG 179 (345)
T ss_pred CCCCcccHHHHHHHHHhc-CCeEEECCchhhhcc
Confidence 489999999999999866 677999888888887
No 326
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.051 Score=55.81 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=34.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDP 60 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~ 60 (269)
+||+|+|||+|+..+|+.+|-++|- +..|-- =..+|.+|-++..++-.+-
T Consensus 356 VGPPGVGKTSLgkSIA~al~RkfvR---------~sLGGv-rDEAEIRGHRRTYIGamPG 405 (782)
T COG0466 356 VGPPGVGKTSLGKSIAKALGRKFVR---------ISLGGV-RDEAEIRGHRRTYIGAMPG 405 (782)
T ss_pred ECCCCCCchhHHHHHHHHhCCCEEE---------EecCcc-ccHHHhccccccccccCCh
Confidence 6999999999999999999877553 111211 1256666666667766654
No 327
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.29 E-value=0.37 Score=49.86 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..||+.++++
T Consensus 44 ~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 44 TGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred ECCCCCcHHHHHHHHHHHhccc
Confidence 5999999999999999999875
No 328
>CHL00176 ftsH cell division protein; Validated
Probab=93.28 E-value=0.059 Score=55.17 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=26.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
.||+|||||.||..+|...+.++++++.-+
T Consensus 222 ~GPpGTGKT~LAralA~e~~~p~i~is~s~ 251 (638)
T CHL00176 222 VGPPGTGKTLLAKAIAGEAEVPFFSISGSE 251 (638)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeeeccHHH
Confidence 499999999999999999999988877544
No 329
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=93.26 E-value=0.066 Score=49.76 Aligned_cols=41 Identities=17% Similarity=0.482 Sum_probs=34.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceec-CCccccCCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYK-GLDIATNKV 42 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk-~l~I~Takp 42 (269)
+||+|+|||.+|.+|-++ |.-.|.=|.+-+|+ +-+..-++|
T Consensus 151 tG~SG~GKSElALeLi~r-ghrLVaDD~V~i~~~~~~~L~gr~ 192 (308)
T COG1493 151 TGPSGAGKSELALELIKR-GHRLVADDAVEIFREGGNRLVGRA 192 (308)
T ss_pred ECCCCCCHhHHHHHHHHh-ccceeccccEEEEeccCCeEeecC
Confidence 599999999999999988 78889999999999 655555554
No 330
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.25 E-value=0.045 Score=52.16 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|||||||||+...|...+
T Consensus 140 ~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 140 TGATGSGKSTLLAAIIREL 158 (358)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999999876
No 331
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.25 E-value=0.076 Score=47.58 Aligned_cols=43 Identities=21% Similarity=0.187 Sum_probs=26.8
Q ss_pred CCCCcCchhHHHHHHHHHcC-CeeeeCCccceecCCccccCCCC
Q 044048 1 MGATATGKTKLSIDLAIHFS-GEAINSDKIQVYKGLDIATNKVT 43 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-~eiIs~Ds~QvYk~l~I~Takpt 43 (269)
+||+|||||||-..|-+-.. .+-+-++.--.|.|-+|-+.+..
T Consensus 39 IGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 39 IGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 59999999999999986542 12233334444555555444333
No 332
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.24 E-value=0.12 Score=45.35 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=16.3
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||+|+..+|..
T Consensus 25 ~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 25 FGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999855
No 333
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.23 E-value=0.37 Score=43.78 Aligned_cols=117 Identities=18% Similarity=0.244 Sum_probs=67.0
Q ss_pred CCCCcCchhHHHHHHHHHcC---CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCH--HHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS---GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPV--EEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~---~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~--~~f~~~a~~ 75 (269)
.|+.|||||++..++...+. .-+|.++.-++..=-+| .+.+...|+.+|=++|.- .|.. ..|
T Consensus 58 ~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l------~~~l~~~~~kFIlf~DDL-sFe~~d~~y------ 124 (249)
T PF05673_consen 58 WGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPEL------LDLLRDRPYKFILFCDDL-SFEEGDTEY------ 124 (249)
T ss_pred ecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHH------HHHHhcCCCCEEEEecCC-CCCCCcHHH------
Confidence 49999999999999998874 45666655443221001 234456777766666532 2222 222
Q ss_pred HHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHH-HHHHHHHHHHH----HHHHcCcHHHHHhhc
Q 044048 76 AIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPL-VLYKYVGIRVD----KMVETGLVDEVRDMF 150 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e-~L~~Ri~~Rv~----~Ml~~Gll~Ev~~l~ 150 (269)
-+++|+|+|.- ..+.+-+.++....|- .+.+....|-+ ++-..--++|--.|.
T Consensus 125 -------------------k~LKs~LeGgl---e~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLs 182 (249)
T PF05673_consen 125 -------------------KALKSVLEGGL---EARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLS 182 (249)
T ss_pred -------------------HHHHHHhcCcc---ccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHH
Confidence 23566676631 2233446677766653 34445555544 333345677777777
Q ss_pred CC
Q 044048 151 DP 152 (269)
Q Consensus 151 ~~ 152 (269)
++
T Consensus 183 DR 184 (249)
T PF05673_consen 183 DR 184 (249)
T ss_pred Hh
Confidence 65
No 334
>PLN03025 replication factor C subunit; Provisional
Probab=93.21 E-value=0.05 Score=50.57 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.0
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||+|+|||++|..+|+.+.+
T Consensus 40 ~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 40 SGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred ECCCCCCHHHHHHHHHHHHhc
Confidence 499999999999999999854
No 335
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.20 E-value=0.054 Score=49.90 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.8
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||+|||||++|..+|+.+.+
T Consensus 42 ~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 42 QGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred ECCCCCCHHHHHHHHHHHhcC
Confidence 499999999999999998753
No 336
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.20 E-value=0.23 Score=41.20 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.1
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds 28 (269)
+|+.|||||+++..++..+ ..-++.+|-
T Consensus 5 ~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 5 TGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 4999999999999999876 235788884
No 337
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.14 E-value=0.059 Score=55.82 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
.||+|||||.+|..+|..++..+++++.-.
T Consensus 493 ~GppGtGKT~lakalA~e~~~~fi~v~~~~ 522 (733)
T TIGR01243 493 FGPPGTGKTLLAKAVATESGANFIAVRGPE 522 (733)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 499999999999999999999888876533
No 338
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=93.13 E-value=0.039 Score=51.63 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=29.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~ 34 (269)
.|++|+|||++|.+|-++ |...|.=|.+.+++.
T Consensus 152 ~G~SG~GKSelALeLi~r-Gh~LVaDD~v~i~~~ 184 (308)
T PRK05428 152 TGESGIGKSETALELIKR-GHRLVADDAVDIKRI 184 (308)
T ss_pred EcCCCCCHHHHHHHHHHc-CCceEecCeEEEEEe
Confidence 499999999999999987 788999999999884
No 339
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.01 E-value=0.064 Score=45.02 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
.||+|||||+|+.+++..
T Consensus 5 ~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 5 SGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999998775
No 340
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.98 E-value=0.34 Score=49.06 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=20.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.+++.
T Consensus 44 ~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 44 TGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC
Confidence 4999999999999999999754
No 341
>PRK09183 transposase/IS protein; Provisional
Probab=92.97 E-value=0.055 Score=49.11 Aligned_cols=18 Identities=39% Similarity=0.696 Sum_probs=16.2
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||.||..|+..
T Consensus 108 ~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 108 LGPSGVGKTHLAIALGYE 125 (259)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 599999999999999765
No 342
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=92.97 E-value=0.067 Score=50.24 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAIN 25 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs 25 (269)
+|++|||||+|+..|+..++..++.
T Consensus 168 ~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 168 LGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred ECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 5999999999999999999887644
No 343
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.95 E-value=0.074 Score=49.40 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=17.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|||||||||+...|...+
T Consensus 138 ~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 138 VGGTGSGKTTLANALLAEI 156 (299)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999999876
No 344
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.94 E-value=0.19 Score=43.11 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=21.9
Q ss_pred CCCCcCchhHHHHHHHHHc--CCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHF--SGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~--~~eiIs~Ds~Q 30 (269)
.||.|||||++...+-..+ +.++||+|-|-
T Consensus 8 aG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA 39 (187)
T COG4185 8 AGPNGSGKSTVYASTLAPLLPGIVFVNADEIA 39 (187)
T ss_pred ecCCCCCceeeeeccchhhcCCeEEECHHHHh
Confidence 3999999999965544333 34789998764
No 345
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.90 E-value=0.069 Score=43.41 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=22.0
Q ss_pred CCCcCchhHHHHHHHHHcCCe-eeeCCc---cceecC
Q 044048 2 GATATGKTKLSIDLAIHFSGE-AINSDK---IQVYKG 34 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~e-iIs~Ds---~QvYk~ 34 (269)
|+-|+|||+|+..+++.+|.+ .|++=+ ||.|..
T Consensus 22 GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~ 58 (123)
T PF02367_consen 22 GDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEG 58 (123)
T ss_dssp ESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecC
Confidence 899999999999999999764 444333 455543
No 346
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.87 E-value=0.37 Score=47.30 Aligned_cols=144 Identities=10% Similarity=0.047 Sum_probs=70.6
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCccceecCCc--cccCCCCHhhh----cCCCceecccCCCCCCCCHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDKIQVYKGLD--IATNKVTESER----QGVPHHLLGFVDPEADYPVEEF 69 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~QvYk~l~--I~Takpt~~e~----~~v~hhl~~~~~~~~~~~~~~f 69 (269)
.|++|+|||.|+..++..+ +..++-+.+..+.+.+. +..+.-..++. ..++=-++|-++.-. .-...
T Consensus 147 ~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~--~k~~~ 224 (450)
T PRK14087 147 YGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS--YKEKT 224 (450)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccccc--CCHHH
Confidence 4999999999999998854 23444333333333321 11100011111 222223444443211 11234
Q ss_pred HHHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccc-eEEEEEeC-CHHHHHHHHHHHHHHHHHcC----cH
Q 044048 70 CEHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYD-CCFIWMDV-DPLVLYKYVGIRVDKMVETG----LV 143 (269)
Q Consensus 70 ~~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~-~~~~~l~~-~~e~L~~Ri~~Rv~~Ml~~G----ll 143 (269)
.+.....+..+.++|+ +||+.+.+.- ..+.+....+..|+. ..++-|.+ +.+.+.+-|.++++. .| +-
T Consensus 225 ~e~lf~l~N~~~~~~k-~iIltsd~~P--~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~---~gl~~~l~ 298 (450)
T PRK14087 225 NEIFFTIFNNFIENDK-QLFFSSDKSP--ELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN---QNIKQEVT 298 (450)
T ss_pred HHHHHHHHHHHHHcCC-cEEEECCCCH--HHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh---cCCCCCCC
Confidence 4556667777778887 4555433221 122222223344544 23444554 456666666666654 24 55
Q ss_pred HHHHhhcCC
Q 044048 144 DEVRDMFDP 152 (269)
Q Consensus 144 ~Ev~~l~~~ 152 (269)
+|+..++..
T Consensus 299 ~evl~~Ia~ 307 (450)
T PRK14087 299 EEAINFISN 307 (450)
T ss_pred HHHHHHHHH
Confidence 777666644
No 347
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.87 E-value=0.2 Score=47.04 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=15.5
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.|||||||||--.++-..+|
T Consensus 131 TGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 131 TGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred eCCCCCcHHHHHHHHHHHHh
Confidence 49999999987766665554
No 348
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.87 E-value=0.066 Score=55.94 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAIN 25 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs 25 (269)
+||+|+|||++|..||+.++.+.+.
T Consensus 353 ~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 353 VGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 5999999999999999999876543
No 349
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.81 E-value=0.07 Score=55.29 Aligned_cols=29 Identities=28% Similarity=0.228 Sum_probs=25.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
.||+|||||+|+..+|..++..++.++.-
T Consensus 218 ~GppGtGKT~laraia~~~~~~~i~i~~~ 246 (733)
T TIGR01243 218 YGPPGTGKTLLAKAVANEAGAYFISINGP 246 (733)
T ss_pred ECCCCCChHHHHHHHHHHhCCeEEEEecH
Confidence 49999999999999999999888776643
No 350
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.79 E-value=0.064 Score=38.44 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=14.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+|--++--.+
T Consensus 29 ~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 29 TGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999976665443
No 351
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.77 E-value=0.62 Score=47.11 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=20.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..||+.++++
T Consensus 44 ~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 44 SGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred ECCCCCCHHHHHHHHHHhhccc
Confidence 4999999999999999999865
No 352
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.76 E-value=0.067 Score=41.12 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=17.6
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.||||||||..+..++..+.
T Consensus 6 ~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 6 AAPTGSGKTLAALLPILELL 25 (144)
T ss_pred ECCCCCchhHHHHHHHHHHH
Confidence 48999999999999988864
No 353
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.72 E-value=0.047 Score=49.18 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=19.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
+|||||||||+...|...++-.
T Consensus 133 ~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 133 SGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp EESTTSSHHHHHHHHHHHCHTT
T ss_pred ECCCccccchHHHHHhhhcccc
Confidence 4999999999999999887543
No 354
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.68 E-value=0.37 Score=48.06 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.3
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||+|+|||++|..+|+.++.
T Consensus 42 ~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 42 SGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred ECCCCCCHHHHHHHHHHHHhc
Confidence 499999999999999999864
No 355
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.67 E-value=0.47 Score=45.84 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=20.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.+.++
T Consensus 42 ~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 42 TGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred ECCCCCcHHHHHHHHHHHhCCC
Confidence 4999999999999999998765
No 356
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.64 E-value=0.072 Score=56.02 Aligned_cols=28 Identities=39% Similarity=0.437 Sum_probs=22.9
Q ss_pred CCCCcCchhHHHHHHHHHcC---CeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFS---GEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~---~eiIs~Ds 28 (269)
+||||+|||.||..||+.+. ..+|.+|.
T Consensus 545 ~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~ 575 (821)
T CHL00095 545 SGPTGVGKTELTKALASYFFGSEDAMIRLDM 575 (821)
T ss_pred ECCCCCcHHHHHHHHHHHhcCCccceEEEEc
Confidence 59999999999999999874 34666664
No 357
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.64 E-value=0.2 Score=52.91 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=17.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|+|||+++..||.++
T Consensus 200 ~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 200 IGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 5999999999999999986
No 358
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.64 E-value=0.07 Score=46.04 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+|+.+++...
T Consensus 18 ~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 18 YGPPGSGKTNICMILAVNA 36 (209)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998754
No 359
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.62 E-value=0.3 Score=46.16 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=28.4
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDI 37 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I 37 (269)
+||.|||||||...|+..+. ..||+.|--..+.+-.|
T Consensus 62 ~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gal 103 (332)
T PRK09435 62 TGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSI 103 (332)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhh
Confidence 59999999999998877652 46899998766655443
No 360
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.61 E-value=0.07 Score=44.75 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=17.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|++|||||+|+..|++.+
T Consensus 5 ~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 5 VGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999999876
No 361
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.58 E-value=0.076 Score=45.41 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||++...++..+
T Consensus 23 ~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 23 QGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp E-STTSSHHHHHHHHHHHH
T ss_pred ECCCCCChHHHHHHHHHHh
Confidence 3999999999988888876
No 362
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.53 E-value=0.54 Score=48.01 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=17.1
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|++|+|||.|+..+|..+
T Consensus 320 yG~sGsGKTHLL~AIa~~a 338 (617)
T PRK14086 320 YGESGLGKTHLLHAIGHYA 338 (617)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999865
No 363
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.47 E-value=0.069 Score=44.58 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=14.9
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+||+|||||+|+..|-.
T Consensus 7 iG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 7 IGPSGSGKTTLAQALNG 23 (143)
T ss_pred ECCCCCCHHHHHHHHcC
Confidence 69999999999888764
No 364
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.45 E-value=0.96 Score=46.09 Aligned_cols=22 Identities=32% Similarity=0.276 Sum_probs=20.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..||+.++++
T Consensus 52 ~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 52 TGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred ECCCCCCHHHHHHHHHHhhCcC
Confidence 4999999999999999999875
No 365
>PRK13768 GTPase; Provisional
Probab=92.41 E-value=0.097 Score=47.29 Aligned_cols=28 Identities=29% Similarity=0.429 Sum_probs=22.7
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds 28 (269)
.||.|||||+++..++..+ ..-+|+.|.
T Consensus 8 ~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 8 LGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred ECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4999999999999888766 234888886
No 366
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.39 E-value=0.92 Score=45.75 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.5
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||.|+|||++|..+|+.+++
T Consensus 44 ~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 44 TGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred ECCCCCCHHHHHHHHHHHhCC
Confidence 499999999999999999875
No 367
>PRK08181 transposase; Validated
Probab=92.36 E-value=0.067 Score=49.05 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|+|||.||..+|...
T Consensus 112 ~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 112 FGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred EecCCCcHHHHHHHHHHHH
Confidence 5999999999999998654
No 368
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=92.34 E-value=0.3 Score=43.19 Aligned_cols=123 Identities=18% Similarity=0.191 Sum_probs=66.6
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhc-CCCceeccc---CCCCC--CCCHHHHHHHHHH
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQ-GVPHHLLGF---VDPEA--DYPVEEFCEHALR 75 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~-~v~hhl~~~---~~~~~--~~~~~~f~~~a~~ 75 (269)
|.=||||||++..|++.+...-+ .+ +.|.-|+-...+ .+.+-+++- .+|.. -+-+++......+
T Consensus 10 GiDGaGKTT~~~~L~~~l~~~g~---~v-------~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~ 79 (208)
T COG0125 10 GIDGAGKTTQAELLKERLEERGI---KV-------VLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEE 79 (208)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCC---eE-------EEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999854422 11 234444432221 133334442 22211 1222333333444
Q ss_pred HHHHHHhcCCceEEEcc---cHHHHHHHHcchhhhh-------cc--ccceEEEEEeCCHHHHHHHHHHHHH
Q 044048 76 AIDKIIENGHLPIIVGG---SNTYIEALVEDSIINF-------RA--NYDCCFIWMDVDPLVLYKYVGIRVD 135 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGG---t~~Y~~~ll~g~~~~~-------~~--~~~~~~~~l~~~~e~L~~Ri~~Rv~ 135 (269)
.|.-...+|+ .||+.. |++.++..-.|.+..+ .. ..+-..++|++|+++--+|+.+|-.
T Consensus 80 ~i~pal~~g~-vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~ 150 (208)
T COG0125 80 VIKPALKEGK-VVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGE 150 (208)
T ss_pred HHHHhhcCCC-EEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 5555556776 445532 3344444333322111 11 1345789999999999999998843
No 369
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.32 E-value=0.082 Score=54.89 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=23.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
.||+|+|||+||..+|+.++..++..+.
T Consensus 58 ~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 58 YGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred ECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 4999999999999999998877665554
No 370
>PF05729 NACHT: NACHT domain
Probab=92.31 E-value=0.081 Score=42.89 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.0
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.|++|+|||+++..++..+-
T Consensus 6 ~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 6 SGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred ECCCCCChHHHHHHHHHHHH
Confidence 49999999999999998874
No 371
>PRK14974 cell division protein FtsY; Provisional
Probab=92.29 E-value=0.096 Score=49.58 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=21.2
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~Ds 28 (269)
+||+||||||++..||..+ + .-++++|.
T Consensus 146 ~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 146 VGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 5999999999888888765 2 23567774
No 372
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.29 E-value=0.08 Score=55.13 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=23.9
Q ss_pred CCCCcCchhHHHHHHHHHc----C---CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHF----S---GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~---~eiIs~Ds~Q 30 (269)
+||||+||||....||..+ | .-+|.+|...
T Consensus 191 VGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 191 VGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred ECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 6999999999999999755 2 2488888643
No 373
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=92.27 E-value=0.082 Score=43.56 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=17.2
Q ss_pred CCCcCchhHHHHHHHHHcCC
Q 044048 2 GATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~ 21 (269)
+|||||||-++..++.++..
T Consensus 32 ~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 32 APTGSGKTIIALALILELAR 51 (184)
T ss_dssp ESTTSSHHHHHHHHHHHHHC
T ss_pred ECCCCCcChhhhhhhhcccc
Confidence 79999999999997777644
No 374
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.26 E-value=0.3 Score=46.12 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=21.6
Q ss_pred CCCCcCchhHHHHHHHHH---cCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIH---FSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~---~~~eiIs~Ds 28 (269)
.||+|||||+|+..++.. .++.++-.|.
T Consensus 61 ~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 61 YGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 499999999999998854 3566665554
No 375
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.26 E-value=0.074 Score=48.19 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|||||||+..||--
T Consensus 39 vGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 39 VGESGSGKSTLARLLAGL 56 (252)
T ss_pred EcCCCCCHHHHHHHHhcc
Confidence 599999999999999843
No 376
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.17 E-value=0.076 Score=53.79 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.4
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|+|||+|+..||+.+.
T Consensus 109 vGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 109 LGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred ecCCCCCchHHHHHHHHHHH
Confidence 59999999999999999764
No 377
>PRK13764 ATPase; Provisional
Probab=92.16 E-value=0.076 Score=53.98 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.2
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|||||||||++..|+..++
T Consensus 263 sG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 263 AGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 59999999999999998875
No 378
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.15 E-value=0.086 Score=49.73 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.9
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+|||||||||+...|...++.
T Consensus 166 ~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 166 SGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred ECCCCCCHHHHHHHHHhhCCC
Confidence 599999999999999988764
No 379
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=92.14 E-value=0.66 Score=47.70 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=22.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
+|..|+|||++|..|++.+++.-+++|.
T Consensus 221 vglp~~GKStia~~L~~~l~~~~~~~~~ 248 (664)
T PTZ00322 221 VGLPGRGKTYVARQIQRYFQWNGLQSRI 248 (664)
T ss_pred cccCCCChhHHHHHHHHHHHhcCCCcEE
Confidence 5899999999999999998655444443
No 380
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.12 E-value=0.098 Score=49.00 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||+|+|||+-|..+|++++++
T Consensus 63 yGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 63 YGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred eCCCCCcHhHHHHHHHHHhcCc
Confidence 3999999999999999999883
No 381
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.08 Score=52.13 Aligned_cols=88 Identities=31% Similarity=0.414 Sum_probs=56.1
Q ss_pred CCCCcCchhHHHHHHHHHcC----CeeeeCCccceecCCc-----cccCCCCHhhhcCCCce------ecc---cCCCCC
Q 044048 1 MGATATGKTKLSIDLAIHFS----GEAINSDKIQVYKGLD-----IATNKVTESERQGVPHH------LLG---FVDPEA 62 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~----~eiIs~Ds~QvYk~l~-----I~Takpt~~e~~~v~hh------l~~---~~~~~~ 62 (269)
+||+|||||.||..+..-++ -|++-+-.+|.|-+.. +..-.| ...||| |++ ...|.+
T Consensus 204 ~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rP-----Fr~PHHsaS~~aLvGGG~~p~PGe 278 (490)
T COG0606 204 VGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRP-----FRAPHHSASLAALVGGGGVPRPGE 278 (490)
T ss_pred ecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCC-----ccCCCccchHHHHhCCCCCCCCCc
Confidence 59999999999999988775 3566666777776632 233333 457888 222 122222
Q ss_pred C----------CCHHHHHHHHHHHHHHHHhcCCceEEEccc
Q 044048 63 D----------YPVEEFCEHALRAIDKIIENGHLPIIVGGS 93 (269)
Q Consensus 63 ~----------~~~~~f~~~a~~~i~~i~~~~~~pIivGGt 93 (269)
- =...+|.+.+.+.+..=+..|++-|-..|+
T Consensus 279 IsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~ 319 (490)
T COG0606 279 ISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGS 319 (490)
T ss_pred eeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCC
Confidence 0 035677776666666656778877777666
No 382
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=91.92 E-value=0.093 Score=41.13 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=16.2
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|||||+|...|...
T Consensus 2 ~G~~gsGKstl~~~l~~~ 19 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQ 19 (163)
T ss_pred cCCCCCCHHHHHHHHhCc
Confidence 699999999999999765
No 383
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.89 E-value=1.3 Score=44.98 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=20.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..||+.++++
T Consensus 44 ~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 44 TGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred ECCCCCCHHHHHHHHHHhhcCC
Confidence 4999999999999999999864
No 384
>PRK04296 thymidine kinase; Provisional
Probab=91.89 E-value=0.091 Score=45.28 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|+|||++++.++.++
T Consensus 8 tG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 8 YGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred ECCCCCHHHHHHHHHHHHH
Confidence 4999999999999999886
No 385
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=0.12 Score=49.87 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=27.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc---ceecC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI---QVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~---QvYk~ 34 (269)
+||+|||||-||.++|..-+..+.|+-|- --|||
T Consensus 251 ~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRG 287 (491)
T KOG0738|consen 251 VGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRG 287 (491)
T ss_pred eCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhcc
Confidence 59999999999999999999877765553 33555
No 386
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=91.81 E-value=0.32 Score=43.36 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=21.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
.|++|+|||++|..|+ -..-+++.|.
T Consensus 18 yG~~G~GKtt~a~~~~--~~~~~~~~d~ 43 (220)
T TIGR01618 18 YGKPGTGKTSTIKYLP--GKTLVLSFDM 43 (220)
T ss_pred ECCCCCCHHHHHHhcC--CCCEEEeccc
Confidence 4999999999999986 2356888876
No 387
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.81 E-value=0.097 Score=49.30 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|+|||||||+...|...+
T Consensus 150 ~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 150 SGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999999875
No 388
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=0.13 Score=49.22 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINS 26 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~ 26 (269)
.||+|+|||-||.+.|.+.++.+|-+
T Consensus 191 YGPPGTGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 191 YGPPGTGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred eCCCCCcHHHHHHHHHhccCceEEEe
Confidence 49999999999999999999986653
No 389
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.1 Score=49.44 Aligned_cols=20 Identities=45% Similarity=0.483 Sum_probs=18.6
Q ss_pred CCCcCchhHHHHHHHHHcCC
Q 044048 2 GATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~ 21 (269)
||+|+|||+|-.+||+++..
T Consensus 184 GPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 184 GPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred CCCCCChhHHHHHHHHhhee
Confidence 99999999999999999854
No 390
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=91.76 E-value=0.47 Score=41.26 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=15.2
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+||.|+|||+|...++.
T Consensus 31 tGpNg~GKSTllr~i~~ 47 (199)
T cd03283 31 TGSNMSGKSTFLRTIGV 47 (199)
T ss_pred ECCCCCChHHHHHHHHH
Confidence 59999999999988874
No 391
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.75 E-value=0.24 Score=46.26 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|+|||+++..+++.+
T Consensus 46 ~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 46 YGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998765
No 392
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=91.74 E-value=0.097 Score=41.75 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|+||||||+|...+...
T Consensus 9 ~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 9 VGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999754
No 393
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.72 E-value=0.11 Score=54.88 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=18.2
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||||||||++|..||+.+.
T Consensus 604 ~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 604 LGPTGVGKTELCKALANFMF 623 (857)
T ss_pred ECCCCCCHHHHHHHHHHHhh
Confidence 59999999999999998873
No 394
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.68 E-value=0.09 Score=48.82 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.9
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||||||||||...|+..++
T Consensus 150 ~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 150 SGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred ECCCCCCHHHHHHHHHccCC
Confidence 59999999999999998775
No 395
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.67 E-value=0.11 Score=54.88 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=21.8
Q ss_pred CCCCcCchhHHHHHHHHHcCC---eeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG---EAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~---eiIs~D 27 (269)
+||||||||.||..||+.+.+ .+|..|
T Consensus 602 ~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 602 VGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred ECCCCCCHHHHHHHHHHHHhCCCcceEEEe
Confidence 599999999999999999832 355555
No 396
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.67 E-value=0.11 Score=43.14 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=16.5
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.|++|+|||+|..++...+..
T Consensus 30 ~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 30 TGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp -B-TTSSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 599999999999998887643
No 397
>PRK08116 hypothetical protein; Validated
Probab=91.67 E-value=0.1 Score=47.65 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=17.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|++|||||.||..+|..+
T Consensus 120 ~G~~GtGKThLa~aia~~l 138 (268)
T PRK08116 120 WGSVGTGKTYLAACIANEL 138 (268)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999975
No 398
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.65 E-value=0.33 Score=45.67 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=20.4
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~Ds 28 (269)
.||+|||||+|+..++... ++.++=.|.
T Consensus 61 ~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 61 YGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 4999999999999887653 445444443
No 399
>CHL00206 ycf2 Ycf2; Provisional
Probab=91.64 E-value=0.11 Score=58.66 Aligned_cols=32 Identities=22% Similarity=0.120 Sum_probs=27.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcccee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVY 32 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvY 32 (269)
+||+|||||.||.+||...+++.|++..-.+.
T Consensus 1636 iGPPGTGKTlLAKALA~es~VPFIsISgs~fl 1667 (2281)
T CHL00206 1636 IGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2281)
T ss_pred ECCCCCCHHHHHHHHHHhcCCceEEEEHHHHh
Confidence 59999999999999999999998877654443
No 400
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.62 E-value=1.2 Score=37.67 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||+|+|||+++..+|+.+.++
T Consensus 20 ~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 20 AGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred ECCCCCCHHHHHHHHHHHHcCC
Confidence 4999999999999999998764
No 401
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.60 E-value=1.4 Score=43.35 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||+|+|||++|..+|+.+.++
T Consensus 45 ~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 45 SGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred EcCCCCCHHHHHHHHHHHhcCC
Confidence 4999999999999999999765
No 402
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.53 E-value=0.1 Score=48.93 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=17.1
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||||||||++...|+..+
T Consensus 154 ~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 154 IGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred ECCCCCCHHHHHHHHHHhh
Confidence 5999999999999999764
No 403
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=91.51 E-value=0.14 Score=47.39 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|+..+|...
T Consensus 101 ~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 101 FGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999998763
No 404
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=91.51 E-value=0.13 Score=45.08 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=28.4
Q ss_pred CCCCcCchhHHHHHHHHHc----CCeeeeCCccceecCCc
Q 044048 1 MGATATGKTKLSIDLAIHF----SGEAINSDKIQVYKGLD 36 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~~eiIs~Ds~QvYk~l~ 36 (269)
+|.||||||.++..|.+.+ ++.+|-.|-.--|..+.
T Consensus 29 ~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GEY~~~~ 68 (229)
T PF01935_consen 29 FGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGEYASLF 68 (229)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCcchhhh
Confidence 5999999999998887765 46788878777666654
No 405
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=91.49 E-value=0.12 Score=52.83 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=26.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+|||||+++..+|..++.++++.+.-.
T Consensus 191 ~G~~G~GKt~~~~~~a~~~~~~f~~is~~~ 220 (644)
T PRK10733 191 VGPPGTGKTLLAKAIAGEAKVPFFTISGSD 220 (644)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEEEehHH
Confidence 599999999999999999999888776543
No 406
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=91.43 E-value=0.12 Score=48.36 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.3
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||+|+|||+||+.+++.+|.
T Consensus 70 aGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 70 AGPPGTGKTALALAISQELGP 90 (456)
T ss_pred ecCCCCchhHHHHHHHHHhCC
Confidence 499999999999999999973
No 407
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.42 E-value=0.11 Score=46.64 Aligned_cols=65 Identities=25% Similarity=0.273 Sum_probs=35.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc-eecCCccccCCCCHhhhcCCCceecccCCCCC----CCCHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ-VYKGLDIATNKVTESERQGVPHHLLGFVDPEA----DYPVEEFCEH 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q-vYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~----~~~~~~f~~~ 72 (269)
+||+|||||||---|+--.. .|+=+ .+.|-|+.+ .+..++.....+-++++-.+- .+|+.+.+..
T Consensus 37 ~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d~~~--l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 37 VGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKDLTK--LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred ECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEcCc--CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 69999999999877764321 12222 122333322 345555555555556554332 4677766663
No 408
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.36 E-value=0.12 Score=53.63 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=39.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhh-----hcCCCce-ecccCCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESE-----RQGVPHH-LLGFVDP 60 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e-----~~~v~hh-l~~~~~~ 60 (269)
+||+|||||-||.++|..-|.+++|+=.=. +=+|-+|-+-....+ +...||. ++|.+|.
T Consensus 350 ~GPPGTGKTLLAKAiAGEAgVPF~svSGSE-FvE~~~g~~asrvr~lf~~ar~~aP~iifideida 414 (774)
T KOG0731|consen 350 VGPPGTGKTLLAKAIAGEAGVPFFSVSGSE-FVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDA 414 (774)
T ss_pred ECCCCCcHHHHHHHHhcccCCceeeechHH-HHHHhcccchHHHHHHHHHhhccCCeEEEeccccc
Confidence 599999999999999999999999875532 223333332222222 3457774 6676654
No 409
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.34 E-value=0.14 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.305 Sum_probs=20.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEA 23 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ei 23 (269)
.||+|.||||||.-+|..+|..+
T Consensus 58 ~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 58 FGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred eCCCCCcHHHHHHHHHHHhcCCe
Confidence 59999999999999999998653
No 410
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.34 E-value=0.3 Score=45.76 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=49.6
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHHH
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKII 81 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i~ 81 (269)
|+|||||+-+|.-||..+ |++. .+...-||++...+..+.=.+.+|+....+.|.+-.
T Consensus 117 G~tGTGKN~Va~iiA~n~------------~~~G----------l~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v 174 (344)
T KOG2170|consen 117 GWTGTGKNYVAEIIAENL------------YRGG----------LRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTV 174 (344)
T ss_pred CCCCCchhHHHHHHHHHH------------Hhcc----------ccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999985 5521 133344777777776666678889988888887766
Q ss_pred hcCCceEEE
Q 044048 82 ENGHLPIIV 90 (269)
Q Consensus 82 ~~~~~pIiv 90 (269)
+.-..+|++
T Consensus 175 ~~C~rslFI 183 (344)
T KOG2170|consen 175 QACQRSLFI 183 (344)
T ss_pred HhcCCceEE
Confidence 665656655
No 411
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.33 E-value=0.12 Score=46.97 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=17.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|+|||.||.++|..+
T Consensus 111 ~G~~G~GKThLa~Ai~~~l 129 (254)
T COG1484 111 LGPPGVGKTHLAIAIGNEL 129 (254)
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 4999999999999999886
No 412
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=91.32 E-value=0.16 Score=45.58 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCCCcCchhHHHHHHHHHcCC--eeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSG--EAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~--eiIs~Ds~ 29 (269)
.||+|||||....+||+.+|- -+.|||.-
T Consensus 38 ~GpagtGKtetik~La~~lG~~~~vfnc~~~ 68 (231)
T PF12774_consen 38 SGPAGTGKTETIKDLARALGRFVVVFNCSEQ 68 (231)
T ss_dssp ESSTTSSHHHHHHHHHHCTT--EEEEETTSS
T ss_pred cCCCCCCchhHHHHHHHHhCCeEEEeccccc
Confidence 499999999999999999985 57777763
No 413
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=91.29 E-value=0.13 Score=50.69 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||+|+|||++|..||..+.++
T Consensus 200 ~GppGtGKT~lA~~la~~l~~~ 221 (459)
T PRK11331 200 QGPPGVGKTFVARRLAYLLTGE 221 (459)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC
Confidence 4999999999999999998764
No 414
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=91.27 E-value=0.14 Score=48.51 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.7
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.||+|+|||+++..||+-++
T Consensus 35 ~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 35 FGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred EcCCCCCHHHHHHHHHHHCC
Confidence 49999999999999999995
No 415
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.12 E-value=0.16 Score=44.44 Aligned_cols=19 Identities=32% Similarity=0.634 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+|+.++|...
T Consensus 29 ~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 29 YGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999743
No 416
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=91.11 E-value=0.34 Score=41.70 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=13.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|+||||||++...++..+
T Consensus 44 ~G~tgsGKS~~l~~ll~~l 62 (205)
T PF01580_consen 44 AGATGSGKSTLLRTLLLSL 62 (205)
T ss_dssp E--TTSSHHHHHHHHHHHH
T ss_pred EcCCCCCccHHHHHHHHHH
Confidence 4999999999988776654
No 417
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.06 E-value=0.11 Score=46.76 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||||||||||...|+--+
T Consensus 36 ~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 36 IGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred ECCCCCCHHHHHHHHcCcC
Confidence 5999999999998887543
No 418
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.00 E-value=0.13 Score=44.24 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=18.1
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|++|||||||...|.+.+.
T Consensus 12 vG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 12 AAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred ECCCCChHHHHHHHHHHHHh
Confidence 59999999999999998864
No 419
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=90.98 E-value=0.65 Score=41.99 Aligned_cols=128 Identities=16% Similarity=0.257 Sum_probs=70.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCc--eecccCCCCCCCCHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPH--HLLGFVDPEADYPVEEFCEHALRAID 78 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~h--hl~~~~~~~~~~~~~~f~~~a~~~i~ 78 (269)
+|-++||||+.|.+|++.+...+- =||+-+-. +|-.|+.| |..| .-....-+...+.+++
T Consensus 7 ~G~P~SGKstrA~~L~~~l~~~~~-K~~v~ii~-----------deslg~~~ns~y~~------s~~EK~lRg~L~S~v~ 68 (281)
T KOG3062|consen 7 CGLPCSGKSTRAVELREALKERGT-KQSVRIID-----------DESLGIEKNSNYGD------SQAEKALRGKLRSAVD 68 (281)
T ss_pred eCCCCCCchhHHHHHHHHHHhhcc-cceEEEec-----------hhhcCCCCcccccc------cHHHHHHHHHHHHHHH
Confidence 588999999999999998853321 11111111 11122222 1000 0122233444555556
Q ss_pred HHHhcCCceEEEcccHHHHHHHHcchhhhh-ccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhh
Q 044048 79 KIIENGHLPIIVGGSNTYIEALVEDSIINF-RANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDM 149 (269)
Q Consensus 79 ~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~-~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l 149 (269)
.-++++.+.|+- +..||+.+-....-.- ..+-.+|+++..+|.+.-++-=..|-+.=. .|.-+|+-+-
T Consensus 69 R~Lsk~~iVI~D--slNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e-~gy~~e~le~ 137 (281)
T KOG3062|consen 69 RSLSKGDIVIVD--SLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGE-DGYDDELLEA 137 (281)
T ss_pred hhcccCcEEEEe--cccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCC-CCCCHHHHHH
Confidence 666888877665 5567766654321100 123456888888998887776666654433 6677775443
No 420
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.95 E-value=0.76 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=20.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 44 ~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 44 SGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC
Confidence 4999999999999999999764
No 421
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.92 E-value=0.15 Score=53.86 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=21.5
Q ss_pred CCCCcCchhHHHHHHHHHcC---CeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFS---GEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~---~eiIs~D 27 (269)
+||||+|||.+|..||+.+. ..++..|
T Consensus 601 ~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d 630 (852)
T TIGR03346 601 LGPTGVGKTELAKALAEFLFDDEDAMVRID 630 (852)
T ss_pred EcCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 59999999999999999873 3455444
No 422
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.91 E-value=0.15 Score=46.54 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||+|+|||++|..||+.+.++
T Consensus 30 ~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 30 YGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eCCCCCCHHHHHHHHHHHHhCC
Confidence 4999999999999999999765
No 423
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.87 E-value=0.14 Score=46.71 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.3
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|||||||||+...+...++
T Consensus 86 sG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 86 TGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred ECCCCCcHHHHHHHHHhhhC
Confidence 59999999999998877764
No 424
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.84 E-value=0.097 Score=41.74 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|...|+..+
T Consensus 17 ~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 17 VGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EESTTSSHHHHHHHHTTSS
T ss_pred EccCCCccccceeeecccc
Confidence 5999999999999998765
No 425
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=90.83 E-value=0.13 Score=44.62 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 36 ~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 36 VGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCCCHHHHHHHHhCCc
Confidence 5999999999999998654
No 426
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.80 E-value=1.6 Score=43.37 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.6
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||.|+|||++|..+|+.+++
T Consensus 44 ~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 44 AGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred ECCCCCCHHHHHHHHHHHhcC
Confidence 499999999999999999975
No 427
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.76 E-value=0.15 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||+|||||+++..+|..++..
T Consensus 222 yGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 222 YGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred ECCCCCcHHHHHHHHHHhhccc
Confidence 4999999999999999998654
No 428
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.74 E-value=0.14 Score=47.72 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=17.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|+|||.|+.++|..+
T Consensus 162 ~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 162 YGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999886
No 429
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=90.69 E-value=0.16 Score=39.27 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|+.|||||+|...|+....
T Consensus 5 ~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 5 LGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp ECSTTSSHHHHHHHHHHSS-
T ss_pred ECcCCCCHHHHHHHHhcCCC
Confidence 59999999999999986643
No 430
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=90.67 E-value=1 Score=42.14 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=59.6
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
.|++|+|||||--.|.+.|- .-||.+|.---|-|-.|.-+|..-.+...-|--++--.+ ..=+.+.--+.+.+
T Consensus 57 TG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~--srG~lGGlS~at~~ 134 (323)
T COG1703 57 TGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSP--SRGTLGGLSRATRE 134 (323)
T ss_pred cCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecC--CCccchhhhHHHHH
Confidence 49999999999999988872 469999999999999999988877666543333332222 22244444455555
Q ss_pred HHHHHHhcCCceEEE
Q 044048 76 AIDKIIENGHLPIIV 90 (269)
Q Consensus 76 ~i~~i~~~~~~pIiv 90 (269)
+|.-+-+-|.-.|||
T Consensus 135 ~i~~ldAaG~DvIIV 149 (323)
T COG1703 135 AIKLLDAAGYDVIIV 149 (323)
T ss_pred HHHHHHhcCCCEEEE
Confidence 565555667555555
No 431
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.59 E-value=1.2 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 46 ~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 46 SGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred ECCCCCcHHHHHHHHHHHhccc
Confidence 4999999999999999999875
No 432
>PLN03232 ABC transporter C family member; Provisional
Probab=90.48 E-value=0.31 Score=54.52 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=17.9
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|+||||||||..-|.+-+.
T Consensus 1268 VG~SGSGKSTL~~lL~rl~~ 1287 (1495)
T PLN03232 1268 VGRTGAGKSSMLNALFRIVE 1287 (1495)
T ss_pred ECCCCCCHHHHHHHHhCCCc
Confidence 69999999999999998763
No 433
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=90.46 E-value=0.15 Score=44.13 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999754
No 434
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=90.46 E-value=0.24 Score=50.70 Aligned_cols=73 Identities=23% Similarity=0.222 Sum_probs=42.5
Q ss_pred CCCCcCchhHHHHHHHH---HcCCeeeeCCccceecCCccccCCCCHhhhcCCC--ceecccCCCCC--CCCHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI---HFSGEAINSDKIQVYKGLDIATNKVTESERQGVP--HHLLGFVDPEA--DYPVEEFCEHA 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~---~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~--hhl~~~~~~~~--~~~~~~f~~~a 73 (269)
+||||||||++..-++. +.|..+|-.|.-- +.++...=-......|-+ +..+|...|+. .||+-.+....
T Consensus 182 ~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKg---D~~l~~~~~~~~~~~G~~dd~~~f~~~~p~~S~~~NPl~~~~~~ 258 (634)
T TIGR03743 182 LGTTGVGKTRLAELLITQDIRRGDVVIVIDPKG---DADLKRRMRAEAKRAGRPDRFYYFHPAFPEISVRYNPLGNFSRI 258 (634)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC---chHHHHHHHHHHHHhCCCceEEEEecCCCCcCcCcChhhhcCCh
Confidence 59999999999755543 3477888888631 111111000122334555 66778777775 57776655554
Q ss_pred HHH
Q 044048 74 LRA 76 (269)
Q Consensus 74 ~~~ 76 (269)
.+.
T Consensus 259 ~ev 261 (634)
T TIGR03743 259 SEV 261 (634)
T ss_pred HHH
Confidence 443
No 435
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.45 E-value=0.15 Score=44.02 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 33 VGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998654
No 436
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=90.44 E-value=0.62 Score=42.15 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|.||+|||+|.-.|...
T Consensus 37 vG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 37 LGKTGVGKSSTINSIFGE 54 (249)
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 599999999999998865
No 437
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.43 E-value=0.15 Score=45.65 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=15.0
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+||+|||||||-..|..
T Consensus 34 iGpSGSGKSTlLRclN~ 50 (240)
T COG1126 34 IGPSGSGKSTLLRCLNG 50 (240)
T ss_pred ECCCCCCHHHHHHHHHC
Confidence 59999999999988863
No 438
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.43 E-value=0.14 Score=44.87 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=17.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-||..+
T Consensus 37 ~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 37 IGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999765
No 439
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.40 E-value=0.14 Score=43.26 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|+|||+++.++|..+
T Consensus 38 ~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 38 AGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EECSTSSHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 4899999999999999886
No 440
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=90.37 E-value=0.12 Score=43.32 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=19.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEA 23 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ei 23 (269)
+||+|+|||++.-.|.-.+++..
T Consensus 25 ~G~Ng~GKStil~ai~~~L~~~~ 47 (202)
T PF13476_consen 25 YGPNGSGKSTILEAIRYALGGQS 47 (202)
T ss_dssp EESTTSSHHHHHHHHHHHHHSS-
T ss_pred ECCCCCCHHHHHHHHHHHHcCCC
Confidence 49999999999999988887765
No 441
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.34 E-value=0.58 Score=48.95 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=17.3
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|+|||+++..||...
T Consensus 213 vGppGvGKT~lae~la~~i 231 (758)
T PRK11034 213 VGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999999874
No 442
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=90.34 E-value=0.45 Score=42.92 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
+||.|+||++.|-.+++.++...|++-.
T Consensus 21 ~G~pg~gkgt~a~~l~~~~~~~hl~tGd 48 (235)
T KOG3078|consen 21 LGAPGSGKGTQAPRLTKNFGVIHISTGD 48 (235)
T ss_pred EeCCCCCCCccCHHHHHhcCCccchhHH
Confidence 5999999999999999999877655433
No 443
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=90.33 E-value=0.15 Score=46.61 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.0
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||.|||||||-..|+.-+.
T Consensus 34 iGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 34 LGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ECCCCCCHHHHHHHHhccCC
Confidence 59999999999999998664
No 444
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.29 E-value=0.15 Score=44.80 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 32 IGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999654
No 445
>PRK09354 recA recombinase A; Provisional
Probab=90.26 E-value=0.59 Score=44.54 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=21.0
Q ss_pred CCCCcCchhHHHHHHHHH---cCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIH---FSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~---~~~eiIs~Ds 28 (269)
.||+|||||+|+..++.. .|+.++=.|.
T Consensus 66 ~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 66 YGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 499999999999998754 3555555554
No 446
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.25 E-value=0.19 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
.||+|||||++..++|-.++..|-
T Consensus 241 YGPPGTGKSS~IaAmAn~L~ydIy 264 (457)
T KOG0743|consen 241 YGPPGTGKSSFIAAMANYLNYDIY 264 (457)
T ss_pred eCCCCCCHHHHHHHHHhhcCCceE
Confidence 499999999999999999987643
No 447
>PRK10536 hypothetical protein; Provisional
Probab=90.23 E-value=0.18 Score=46.22 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||.||..+|..
T Consensus 80 ~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 80 TGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999985
No 448
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=0.17 Score=52.23 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
+||+|+|||++|..+|+++|-++.
T Consensus 444 ~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 444 VGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred eCCCCCCcccHHHHHHHHhCCceE
Confidence 599999999999999999997743
No 449
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.20 E-value=0.15 Score=44.17 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 35 VGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999654
No 450
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.20 E-value=0.16 Score=44.00 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 34 ~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 34 TGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998654
No 451
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.18 E-value=0.16 Score=44.77 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 33 IGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999998554
No 452
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=90.17 E-value=0.16 Score=43.18 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||..-|+-.+
T Consensus 24 ~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 24 LGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998654
No 453
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.12 E-value=0.17 Score=43.75 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 32 LGPNGAGKTTTIRMILGII 50 (210)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999654
No 454
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.09 E-value=1.9 Score=39.87 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=19.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.+.+.
T Consensus 32 ~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 32 VGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred ECCCCCCHHHHHHHHHHHHcCC
Confidence 4999999999999999998654
No 455
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=90.07 E-value=0.26 Score=50.54 Aligned_cols=79 Identities=22% Similarity=0.204 Sum_probs=48.2
Q ss_pred CCCCcCchhHHHHHHHHH---cCCeeeeCCccceecCCccccCCCCHhhhcCC--CceecccCCCCC--CCCHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH---FSGEAINSDKIQVYKGLDIATNKVTESERQGV--PHHLLGFVDPEA--DYPVEEFCEHA 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~---~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v--~hhl~~~~~~~~--~~~~~~f~~~a 73 (269)
+||||||||+|..-|+.+ .|..+|-.|.-. +.++...=.....+.|- +.++++.-.|+. .||+-......
T Consensus 186 ~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkg---D~el~~~~~~~~~~~GR~~~f~~~~~~~P~~S~~~Npl~n~~~~ 262 (643)
T TIGR03754 186 LGTTRVGKTRLAELLITQDIRRGDVVIVFDPKG---DADLLKRMYAEAKRAGRLDEFYVFHLGWPEISARYNAIGNFGRI 262 (643)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC---CHHHHHHHHHHHHHhCCCCceEEecCCCCccccccChhhccCCh
Confidence 599999999998877643 467788877621 22222222223344555 466777777776 56766544455
Q ss_pred HHHHHHHHh
Q 044048 74 LRAIDKIIE 82 (269)
Q Consensus 74 ~~~i~~i~~ 82 (269)
.+....|.+
T Consensus 263 ~EvasrI~~ 271 (643)
T TIGR03754 263 SEVATRITG 271 (643)
T ss_pred HHHHHHHHH
Confidence 555555543
No 456
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.05 E-value=0.17 Score=44.71 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 34 IGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999998654
No 457
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.05 E-value=0.16 Score=43.73 Aligned_cols=19 Identities=37% Similarity=0.349 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 32 TGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998654
No 458
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=89.98 E-value=0.38 Score=42.98 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.5
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds 28 (269)
+|.+|.|||.+|..|++-|+ ..|.|+..
T Consensus 18 VGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~ 50 (222)
T PF01591_consen 18 VGLPARGKSYIARKLCRYLNWLGVKTKVFNVGD 50 (222)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCcceeeccc
Confidence 69999999999999999875 36777654
No 459
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.92 E-value=0.19 Score=45.52 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=16.2
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
.||+|||||+|+.++|..
T Consensus 42 ~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 42 TGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999998775
No 460
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.86 E-value=0.17 Score=44.05 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 36 VGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998654
No 461
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=89.85 E-value=0.17 Score=47.91 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=24.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVT 43 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt 43 (269)
+||+|||||||-.-+|- .| ..||=+|+=+-...|+-|+
T Consensus 35 lGPSGcGKSTlLr~IAG---Le--~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 35 LGPSGCGKSTLLRMIAG---LE--EPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred ECCCCCCHHHHHHHHhC---CC--CCCCceEEECCEECCCCCh
Confidence 59999999999999983 22 2333344444344455443
No 462
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.85 E-value=0.17 Score=43.66 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||..-|+-.+
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 31 LGPNGAGKTTLMRILATLT 49 (211)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998543
No 463
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.81 E-value=0.18 Score=43.62 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 32 LGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998654
No 464
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.81 E-value=0.18 Score=45.74 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||||-.-+|--
T Consensus 35 lGpSGcGKSTLLriiAGL 52 (248)
T COG1116 35 LGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999998854
No 465
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=89.78 E-value=0.18 Score=43.87 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 32 LGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998654
No 466
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=89.76 E-value=0.18 Score=43.69 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|...|+--+
T Consensus 28 ~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 28 VGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999997554
No 467
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=89.70 E-value=0.18 Score=43.53 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 32 LGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999654
No 468
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=89.68 E-value=0.17 Score=43.80 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 31 ~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 31 VGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred ECCCCCCHHHHHHHHcCCC
Confidence 5999999999999998654
No 469
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.65 E-value=0.2 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||||||||+.--.+-..++.+
T Consensus 264 TGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 264 TGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred eCCCCCCHHHHHHHHHHHhcCC
Confidence 5999999999988888887754
No 470
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=89.62 E-value=0.19 Score=43.97 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=17.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 32 IGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 5999999999999999765
No 471
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=89.61 E-value=0.19 Score=44.22 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998653
No 472
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.58 E-value=0.2 Score=44.06 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=16.3
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|+||+|||+++.+++...
T Consensus 19 ~G~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 19 AARPSMGKTAFALNIAENI 37 (242)
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 4999999999999887654
No 473
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.55 E-value=0.19 Score=44.38 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 34 LGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998654
No 474
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.44 E-value=0.2 Score=42.34 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||+|..-|+..+
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998553
No 475
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=89.44 E-value=0.2 Score=42.94 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 30 ~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 30 IGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998654
No 476
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=89.43 E-value=0.19 Score=41.39 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=17.3
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.+||||+|+..|...+
T Consensus 6 vG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 6 VGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999998776
No 477
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=89.43 E-value=0.2 Score=42.10 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|..-|+-.+
T Consensus 34 ~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 34 IGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCCCHHHHHHHHHhcc
Confidence 5999999999999999654
No 478
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.41 E-value=0.22 Score=43.26 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+|+..+|...
T Consensus 25 ~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 25 FGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred eCCCCCChhHHHHHHHHHh
Confidence 4999999999999998763
No 479
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.40 E-value=0.2 Score=43.66 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 32 LGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998643
No 480
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=89.39 E-value=0.2 Score=43.47 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||..-|+-.+
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 34 LGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999654
No 481
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.39 E-value=1.8 Score=44.19 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 45 ~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 45 CGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred ECCCCCCHHHHHHHHHHHhCCC
Confidence 4999999999999999999754
No 482
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=89.38 E-value=0.25 Score=49.38 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=18.2
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||||||||||+.-|.+-+.
T Consensus 361 VG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 361 VGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred ECCCCCCHHHHHHHHhccCC
Confidence 59999999999999998774
No 483
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=89.37 E-value=0.2 Score=44.20 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 33 LGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999654
No 484
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=89.34 E-value=0.19 Score=44.16 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 32 IGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ECCCCCCHHHHHHHHcCCC
Confidence 5999999999999998654
No 485
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=89.31 E-value=0.21 Score=43.11 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 32 IGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999654
No 486
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=89.31 E-value=0.22 Score=44.38 Aligned_cols=19 Identities=47% Similarity=0.567 Sum_probs=16.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+||.+++..+
T Consensus 30 ~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 30 EGDESTGKSILSQRLAYGF 48 (230)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999998887654
No 487
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=89.30 E-value=0.24 Score=38.07 Aligned_cols=20 Identities=30% Similarity=0.190 Sum_probs=17.3
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|++|||||+|...+.....
T Consensus 2 iG~~~~GKStl~~~l~~~~~ 21 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEF 21 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCc
Confidence 69999999999999986644
No 488
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=89.26 E-value=0.21 Score=43.39 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||..-|+-.+
T Consensus 37 ~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 37 VGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998654
No 489
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.21 E-value=0.22 Score=42.70 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=17.1
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 32 KGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998764
No 490
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=89.20 E-value=0.33 Score=42.69 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||.|||||+|-..+.+.+
T Consensus 19 ~Gp~GSGKTaLie~~~~~L 37 (202)
T COG0378 19 GGPPGSGKTALIEKTLRAL 37 (202)
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 5999999999998887776
No 491
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=89.18 E-value=0.24 Score=44.23 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=18.4
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+||+|||||+|...|+--++.
T Consensus 31 vG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 31 TGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred ECCCCCCHHHHHHHHHHHhcc
Confidence 599999999999999877754
No 492
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=89.18 E-value=0.32 Score=42.19 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.8
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|++|||||||...+++.++
T Consensus 28 ~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 28 MSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 59999999999999998754
No 493
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=89.17 E-value=0.22 Score=43.59 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 42 ~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 42 IGESGSGKSTLLAILAGLD 60 (228)
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999654
No 494
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=89.16 E-value=0.24 Score=41.79 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=18.1
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|++|||||+|...|.+.+.
T Consensus 7 ~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 7 VGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 59999999999999998864
No 495
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=89.13 E-value=0.21 Score=42.09 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|..-|+-..
T Consensus 34 ~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 34 LGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 5999999999999998764
No 496
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.12 E-value=0.21 Score=44.40 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 35 ~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 35 MGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 5999999999999999654
No 497
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=89.12 E-value=0.31 Score=38.84 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=22.6
Q ss_pred CCCCcCchhHHHHHHHHHc---CC--eeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---SG--EAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~--eiIs~Ds 28 (269)
.|..|+|||+++..||..+ +. .+|.+|.
T Consensus 5 ~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 5 TGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4889999999999998876 33 4678887
No 498
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=89.10 E-value=0.22 Score=43.63 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 32 LGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998654
No 499
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.05 E-value=0.22 Score=41.88 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|..-||-.+
T Consensus 32 ~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 32 LGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998754
No 500
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=88.97 E-value=0.23 Score=43.94 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-||-..
T Consensus 34 ~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 34 LGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998653
Done!