Query 044048
Match_columns 269
No_of_seqs 169 out of 1309
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 19:07:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a8t_A Adenylate isopentenyltr 100.0 3.9E-74 1.3E-78 535.6 27.7 265 1-266 46-339 (339)
2 3eph_A TRNA isopentenyltransfe 100.0 3.2E-72 1.1E-76 533.2 19.5 248 1-268 8-331 (409)
3 3exa_A TRNA delta(2)-isopenten 100.0 5.5E-69 1.9E-73 496.5 24.2 213 1-232 9-291 (322)
4 3foz_A TRNA delta(2)-isopenten 100.0 1.1E-68 3.7E-73 493.7 23.4 215 1-233 16-300 (316)
5 3crm_A TRNA delta(2)-isopenten 100.0 2.3E-61 8E-66 447.7 23.7 214 1-232 11-305 (323)
6 3d3q_A TRNA delta(2)-isopenten 100.0 4.7E-58 1.6E-62 428.1 22.6 211 1-230 13-295 (340)
7 2ze6_A Isopentenyl transferase 100.0 4.2E-38 1.4E-42 281.3 17.7 210 1-216 7-224 (253)
8 2qmh_A HPR kinase/phosphorylas 99.6 5.5E-17 1.9E-21 140.8 -3.3 65 1-72 40-111 (205)
9 3trf_A Shikimate kinase, SK; a 99.0 2E-10 6.8E-15 95.5 3.1 105 1-130 11-115 (185)
10 3tau_A Guanylate kinase, GMP k 98.9 1.9E-11 6.5E-16 104.9 -6.1 115 1-134 14-142 (208)
11 3vaa_A Shikimate kinase, SK; s 98.7 5.7E-09 2E-13 88.4 4.4 105 1-131 31-136 (199)
12 3ney_A 55 kDa erythrocyte memb 98.7 3.5E-09 1.2E-13 91.3 1.2 118 1-134 25-156 (197)
13 1ex7_A Guanylate kinase; subst 98.7 2E-07 7E-12 79.4 11.7 109 1-133 7-135 (186)
14 3t61_A Gluconokinase; PSI-biol 98.6 1.6E-07 5.6E-12 79.2 9.9 106 1-134 24-132 (202)
15 3tr0_A Guanylate kinase, GMP k 98.6 3.5E-07 1.2E-11 76.6 10.6 107 1-133 13-139 (205)
16 2iyv_A Shikimate kinase, SK; t 98.5 3.9E-08 1.3E-12 81.6 3.4 107 1-133 8-114 (184)
17 1zuh_A Shikimate kinase; alpha 98.5 1.7E-07 5.8E-12 76.7 7.1 105 1-133 13-117 (168)
18 1ly1_A Polynucleotide kinase; 98.5 1.5E-07 5E-12 77.0 6.7 110 1-134 8-127 (181)
19 1qhx_A CPT, protein (chloramph 98.5 3.8E-07 1.3E-11 74.9 9.2 117 1-134 9-134 (178)
20 3nwj_A ATSK2; P loop, shikimat 98.5 2.2E-07 7.7E-12 82.5 8.1 115 1-140 54-172 (250)
21 1e6c_A Shikimate kinase; phosp 98.5 6.6E-08 2.3E-12 79.0 4.3 106 1-133 8-116 (173)
22 2qor_A Guanylate kinase; phosp 98.5 9.8E-07 3.3E-11 74.7 11.5 119 1-134 18-148 (204)
23 2c95_A Adenylate kinase 1; tra 98.5 4.5E-07 1.5E-11 75.3 9.2 117 1-134 15-134 (196)
24 1ukz_A Uridylate kinase; trans 98.5 4.9E-07 1.7E-11 76.0 9.3 120 1-134 21-142 (203)
25 3zvl_A Bifunctional polynucleo 98.5 1.7E-07 6E-12 88.7 7.1 93 1-135 264-359 (416)
26 1knq_A Gluconate kinase; ALFA/ 98.5 5.3E-07 1.8E-11 74.0 9.2 110 1-134 14-125 (175)
27 2rhm_A Putative kinase; P-loop 98.4 4.1E-07 1.4E-11 75.4 7.7 111 1-135 11-127 (193)
28 2pt5_A Shikimate kinase, SK; a 98.4 1.4E-07 4.8E-12 76.8 3.7 107 1-133 6-113 (168)
29 2p5t_B PEZT; postsegregational 98.4 1.9E-06 6.4E-11 75.8 10.5 120 1-138 38-162 (253)
30 3a4m_A L-seryl-tRNA(SEC) kinas 98.4 1.2E-06 4.1E-11 77.4 9.2 104 1-134 10-121 (260)
31 1kgd_A CASK, peripheral plasma 98.4 5.4E-06 1.9E-10 68.9 12.7 104 1-129 11-134 (180)
32 1gvn_B Zeta; postsegregational 98.4 1.5E-06 5.1E-11 78.3 9.7 119 1-137 39-162 (287)
33 2vli_A Antibiotic resistance p 98.3 9E-07 3.1E-11 72.8 7.0 112 1-134 11-126 (183)
34 2bwj_A Adenylate kinase 5; pho 98.3 1.4E-06 4.7E-11 72.5 8.1 116 1-133 18-136 (199)
35 3iij_A Coilin-interacting nucl 98.3 1.4E-06 4.6E-11 72.0 7.6 101 1-133 17-117 (180)
36 1tev_A UMP-CMP kinase; ploop, 98.3 1.5E-06 5.1E-11 71.7 7.8 29 1-29 9-37 (196)
37 3fdi_A Uncharacterized protein 98.3 1.9E-06 6.5E-11 73.7 8.4 120 1-133 12-137 (201)
38 1via_A Shikimate kinase; struc 98.3 2E-07 6.7E-12 76.9 2.1 103 1-133 10-113 (175)
39 1ltq_A Polynucleotide kinase; 98.3 8.9E-07 3E-11 79.0 6.4 110 1-134 8-127 (301)
40 3lw7_A Adenylate kinase relate 98.3 3E-06 1E-10 68.2 8.3 27 1-28 7-33 (179)
41 3kb2_A SPBC2 prophage-derived 98.2 4.4E-06 1.5E-10 67.6 9.2 30 1-30 7-36 (173)
42 3a00_A Guanylate kinase, GMP k 98.2 7.2E-06 2.4E-10 68.4 10.6 110 1-134 7-136 (186)
43 4eun_A Thermoresistant glucoki 98.2 3.5E-06 1.2E-10 71.1 8.5 110 1-133 35-145 (200)
44 1kag_A SKI, shikimate kinase I 98.2 6.4E-07 2.2E-11 73.2 3.5 108 1-133 10-117 (173)
45 3lnc_A Guanylate kinase, GMP k 98.2 1.6E-06 5.5E-11 74.7 6.2 103 1-133 33-161 (231)
46 1qf9_A UMP/CMP kinase, protein 98.2 2.5E-06 8.5E-11 70.3 7.1 29 1-29 12-40 (194)
47 3cm0_A Adenylate kinase; ATP-b 98.2 2.7E-06 9.2E-11 70.2 7.0 29 1-29 10-38 (186)
48 2f6r_A COA synthase, bifunctio 98.2 3.5E-06 1.2E-10 75.5 7.8 28 1-29 81-108 (281)
49 1kht_A Adenylate kinase; phosp 98.2 4.5E-06 1.5E-10 68.7 7.8 28 1-28 9-41 (192)
50 1uj2_A Uridine-cytidine kinase 98.1 4.6E-06 1.6E-10 73.0 7.7 124 1-148 28-185 (252)
51 2pbr_A DTMP kinase, thymidylat 98.1 3.8E-06 1.3E-10 69.3 6.7 28 1-28 6-36 (195)
52 2pez_A Bifunctional 3'-phospho 98.1 5.7E-06 1.9E-10 68.2 7.5 105 1-133 11-125 (179)
53 2yvu_A Probable adenylyl-sulfa 98.1 1.3E-05 4.5E-10 66.4 9.5 105 1-133 19-133 (186)
54 1nks_A Adenylate kinase; therm 98.1 3.3E-07 1.1E-11 75.6 -0.7 28 1-28 7-39 (194)
55 1cke_A CK, MSSA, protein (cyti 98.1 9.7E-07 3.3E-11 75.2 2.0 31 1-31 11-41 (227)
56 2cdn_A Adenylate kinase; phosp 98.1 2.3E-06 7.8E-11 72.0 4.2 29 1-29 26-54 (201)
57 1uf9_A TT1252 protein; P-loop, 98.0 3.1E-06 1.1E-10 70.5 4.5 28 1-29 14-41 (203)
58 1aky_A Adenylate kinase; ATP:A 98.0 7.2E-06 2.5E-10 69.9 6.9 29 1-29 10-38 (220)
59 3be4_A Adenylate kinase; malar 98.0 6.5E-06 2.2E-10 70.4 6.5 30 1-30 11-40 (217)
60 3uie_A Adenylyl-sulfate kinase 98.0 2E-05 7E-10 66.3 9.4 101 1-131 31-141 (200)
61 3dl0_A Adenylate kinase; phosp 98.0 6.6E-06 2.2E-10 69.8 6.3 29 1-29 6-34 (216)
62 1y63_A LMAJ004144AAA protein; 98.0 1E-05 3.4E-10 67.4 7.3 30 1-30 16-46 (184)
63 1zd8_A GTP:AMP phosphotransfer 98.0 2.6E-06 8.8E-11 73.2 3.6 29 1-29 13-41 (227)
64 4e22_A Cytidylate kinase; P-lo 98.0 1.1E-05 3.7E-10 70.9 7.4 30 1-30 33-62 (252)
65 2qt1_A Nicotinamide riboside k 98.0 1.3E-05 4.4E-10 67.6 7.5 30 1-30 27-57 (207)
66 1vht_A Dephospho-COA kinase; s 98.0 2.7E-05 9.2E-10 66.1 8.9 28 1-29 10-37 (218)
67 3hdt_A Putative kinase; struct 98.0 3.3E-05 1.1E-09 67.3 9.5 123 1-133 20-157 (223)
68 3fb4_A Adenylate kinase; psych 97.9 8.5E-06 2.9E-10 69.0 5.3 29 1-29 6-34 (216)
69 2xb4_A Adenylate kinase; ATP-b 97.9 2E-05 6.7E-10 67.8 7.6 29 1-29 6-34 (223)
70 1zak_A Adenylate kinase; ATP:A 97.9 1E-05 3.4E-10 69.1 5.7 29 1-29 11-39 (222)
71 2z0h_A DTMP kinase, thymidylat 97.9 5.4E-06 1.9E-10 68.7 3.7 26 1-26 6-34 (197)
72 1e4v_A Adenylate kinase; trans 97.8 2.3E-05 7.9E-10 66.6 5.7 29 1-29 6-34 (214)
73 3tlx_A Adenylate kinase 2; str 97.8 2.6E-05 8.9E-10 68.1 5.6 29 1-29 35-63 (243)
74 3umf_A Adenylate kinase; rossm 97.7 4.8E-05 1.7E-09 66.1 6.9 28 1-28 35-62 (217)
75 1x6v_B Bifunctional 3'-phospho 97.7 7.3E-05 2.5E-09 74.6 9.0 102 1-133 58-172 (630)
76 1m7g_A Adenylylsulfate kinase; 97.7 0.00015 5E-09 61.5 9.6 103 1-130 31-149 (211)
77 2h92_A Cytidylate kinase; ross 97.7 0.00024 8.2E-09 60.0 10.2 29 1-29 9-37 (219)
78 1ak2_A Adenylate kinase isoenz 97.7 5.8E-05 2E-09 65.1 6.3 29 1-29 22-50 (233)
79 2plr_A DTMP kinase, probable t 97.7 9.3E-05 3.2E-09 61.7 7.2 21 1-21 10-30 (213)
80 2bdt_A BH3686; alpha-beta prot 97.6 0.00017 5.8E-09 59.7 8.5 29 1-29 8-37 (189)
81 2j41_A Guanylate kinase; GMP, 97.6 0.00021 7.2E-09 59.4 9.1 19 1-19 12-30 (207)
82 1lvg_A Guanylate kinase, GMP k 97.6 0.00064 2.2E-08 57.3 11.8 47 1-55 10-56 (198)
83 3gmt_A Adenylate kinase; ssgci 97.6 0.00016 5.5E-09 63.5 8.0 29 1-29 14-42 (230)
84 2axn_A 6-phosphofructo-2-kinas 97.5 0.0002 6.9E-09 69.7 8.8 113 1-134 41-169 (520)
85 2wwf_A Thymidilate kinase, put 97.5 2.6E-05 8.8E-10 65.4 1.7 28 1-28 16-43 (212)
86 1nn5_A Similar to deoxythymidy 97.5 0.00012 4.2E-09 61.2 5.8 27 1-27 15-41 (215)
87 3r20_A Cytidylate kinase; stru 97.5 9.2E-05 3.1E-09 65.1 5.0 32 1-34 15-46 (233)
88 4i1u_A Dephospho-COA kinase; s 97.4 0.00018 6.3E-09 62.2 6.2 128 1-150 15-164 (210)
89 3sr0_A Adenylate kinase; phosp 97.4 0.00019 6.5E-09 61.6 6.1 28 1-28 6-33 (206)
90 1sq5_A Pantothenate kinase; P- 97.4 0.00017 5.7E-09 65.3 5.8 30 1-30 86-122 (308)
91 2grj_A Dephospho-COA kinase; T 97.4 4.3E-05 1.5E-09 65.0 1.7 29 1-29 18-46 (192)
92 4eaq_A DTMP kinase, thymidylat 97.4 0.00049 1.7E-08 59.7 8.4 20 1-20 32-51 (229)
93 1s96_A Guanylate kinase, GMP k 97.3 0.0019 6.6E-08 55.7 11.6 117 1-132 22-149 (219)
94 3c8u_A Fructokinase; YP_612366 97.3 0.00069 2.3E-08 57.2 8.1 30 1-30 28-62 (208)
95 1c9k_A COBU, adenosylcobinamid 97.1 8.5E-06 2.9E-10 69.1 -5.8 82 1-102 5-91 (180)
96 2if2_A Dephospho-COA kinase; a 97.1 0.00012 4.2E-09 61.1 1.3 28 1-29 7-34 (204)
97 3tqc_A Pantothenate kinase; bi 97.1 0.00054 1.8E-08 62.9 5.5 30 1-30 98-134 (321)
98 3ake_A Cytidylate kinase; CMP 97.1 0.00015 5E-09 60.5 1.6 30 1-30 8-37 (208)
99 1jjv_A Dephospho-COA kinase; P 97.0 0.00015 5.1E-09 60.8 1.4 28 1-29 8-35 (206)
100 2ga8_A Hypothetical 39.9 kDa p 97.0 0.0027 9.2E-08 59.2 9.4 35 115-152 291-328 (359)
101 1gtv_A TMK, thymidylate kinase 96.9 4.8E-05 1.6E-09 63.9 -3.0 21 1-21 6-26 (214)
102 3syl_A Protein CBBX; photosynt 96.8 0.00079 2.7E-08 59.6 4.3 34 1-34 73-113 (309)
103 2gks_A Bifunctional SAT/APS ki 96.8 0.0012 4.2E-08 64.6 5.8 100 1-131 378-488 (546)
104 1m8p_A Sulfate adenylyltransfe 96.8 0.0031 1E-07 62.2 8.2 98 1-131 402-514 (573)
105 1a7j_A Phosphoribulokinase; tr 96.7 0.00029 1E-08 63.4 0.7 30 1-30 11-45 (290)
106 1d2n_A N-ethylmaleimide-sensit 96.7 0.0061 2.1E-07 53.2 8.7 29 1-29 70-98 (272)
107 3asz_A Uridine kinase; cytidin 96.7 0.00052 1.8E-08 57.6 1.7 29 1-29 12-42 (211)
108 4gp7_A Metallophosphoesterase; 96.6 0.0023 7.8E-08 52.5 5.4 23 112-134 100-122 (171)
109 2p65_A Hypothetical protein PF 96.6 0.0026 8.7E-08 51.1 5.2 19 1-19 49-67 (187)
110 2jaq_A Deoxyguanosine kinase; 96.6 0.001 3.4E-08 54.9 2.7 25 1-25 6-30 (205)
111 2kjq_A DNAA-related protein; s 96.6 0.0047 1.6E-07 49.8 6.7 72 1-86 42-116 (149)
112 1q3t_A Cytidylate kinase; nucl 96.6 0.00068 2.3E-08 58.4 1.7 30 1-30 22-51 (236)
113 1z6g_A Guanylate kinase; struc 96.6 0.0014 4.8E-08 56.0 3.7 46 1-54 29-74 (218)
114 1jbk_A CLPB protein; beta barr 96.5 0.0047 1.6E-07 49.4 6.5 19 1-19 49-67 (195)
115 3aez_A Pantothenate kinase; tr 96.5 0.0022 7.6E-08 58.3 5.0 119 1-137 96-242 (312)
116 3cr8_A Sulfate adenylyltranfer 96.5 0.0032 1.1E-07 61.8 6.4 99 1-131 375-487 (552)
117 3eie_A Vacuolar protein sortin 96.5 0.006 2.1E-07 55.0 7.8 31 1-31 57-87 (322)
118 2jeo_A Uridine-cytidine kinase 96.5 0.0012 3.9E-08 57.3 2.7 34 1-36 31-74 (245)
119 2bbw_A Adenylate kinase 4, AK4 96.5 0.00072 2.5E-08 58.5 1.3 30 1-30 33-62 (246)
120 1znw_A Guanylate kinase, GMP k 96.5 0.0019 6.4E-08 54.4 3.8 44 1-53 26-69 (207)
121 4tmk_A Protein (thymidylate ki 96.4 0.0035 1.2E-07 53.9 5.5 21 113-133 133-153 (213)
122 3v9p_A DTMP kinase, thymidylat 96.3 0.00017 6E-09 62.9 -3.4 21 2-22 32-52 (227)
123 3t15_A Ribulose bisphosphate c 96.3 0.0012 4.2E-08 59.0 2.0 31 1-31 42-72 (293)
124 3lv8_A DTMP kinase, thymidylat 96.3 0.0016 5.4E-08 57.1 2.6 21 113-133 155-175 (236)
125 1lv7_A FTSH; alpha/beta domain 96.3 0.002 6.7E-08 55.8 3.0 31 1-31 51-81 (257)
126 4edh_A DTMP kinase, thymidylat 96.2 0.00076 2.6E-08 58.1 0.2 20 2-21 13-32 (213)
127 1bif_A 6-phosphofructo-2-kinas 96.2 0.0047 1.6E-07 58.9 5.5 26 1-26 45-70 (469)
128 1zp6_A Hypothetical protein AT 96.2 0.0015 5.2E-08 53.6 1.8 29 1-29 15-45 (191)
129 2v54_A DTMP kinase, thymidylat 96.2 0.0014 4.8E-08 54.3 1.5 26 1-26 10-36 (204)
130 2r62_A Cell division protease 96.2 0.0021 7.3E-08 55.8 2.7 30 1-30 50-79 (268)
131 3h4m_A Proteasome-activating n 96.2 0.003 1E-07 55.3 3.6 33 1-33 57-89 (285)
132 3hws_A ATP-dependent CLP prote 96.1 0.0021 7.1E-08 58.9 2.4 30 1-30 57-86 (363)
133 3bos_A Putative DNA replicatio 96.1 0.0052 1.8E-07 51.5 4.7 20 1-20 58-77 (242)
134 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0022 7.4E-08 55.2 2.4 29 1-29 45-73 (262)
135 1um8_A ATP-dependent CLP prote 96.1 0.0024 8.1E-08 58.7 2.7 31 1-31 78-108 (376)
136 1kjw_A Postsynaptic density pr 96.1 0.022 7.5E-07 51.4 9.0 105 1-133 111-235 (295)
137 3cf0_A Transitional endoplasmi 96.0 0.0029 1E-07 56.5 3.0 31 1-31 55-85 (301)
138 4hlc_A DTMP kinase, thymidylat 96.0 0.007 2.4E-07 51.6 5.1 21 113-133 125-145 (205)
139 3b9p_A CG5977-PA, isoform A; A 96.0 0.003 1E-07 55.6 2.7 28 1-28 60-87 (297)
140 1ofh_A ATP-dependent HSL prote 95.9 0.003 1E-07 55.5 2.5 31 1-31 56-86 (310)
141 3pxi_A Negative regulator of g 95.9 0.025 8.6E-07 56.9 9.6 28 1-28 527-557 (758)
142 4b4t_K 26S protease regulatory 95.9 0.0037 1.3E-07 59.5 3.3 32 1-32 212-243 (428)
143 1tue_A Replication protein E1; 95.8 0.004 1.4E-07 54.0 2.8 28 1-28 64-91 (212)
144 4b4t_J 26S protease regulatory 95.8 0.004 1.4E-07 58.9 2.9 32 1-32 188-219 (405)
145 4b4t_M 26S protease regulatory 95.8 0.0043 1.5E-07 59.2 3.0 32 1-32 221-252 (434)
146 4b4t_L 26S protease subunit RP 95.8 0.0042 1.4E-07 59.3 2.8 31 1-31 221-251 (437)
147 1ixz_A ATP-dependent metallopr 95.7 0.0043 1.5E-07 53.5 2.4 30 1-30 55-84 (254)
148 2c9o_A RUVB-like 1; hexameric 95.6 0.0052 1.8E-07 58.3 2.9 33 1-33 69-103 (456)
149 2x8a_A Nuclear valosin-contain 95.6 0.0056 1.9E-07 54.3 2.7 30 1-30 50-79 (274)
150 3ec2_A DNA replication protein 95.5 0.0057 1.9E-07 49.9 2.5 19 1-19 44-62 (180)
151 4b4t_H 26S protease regulatory 95.5 0.0065 2.2E-07 58.5 3.2 32 1-32 249-280 (467)
152 1g41_A Heat shock protein HSLU 95.5 0.0052 1.8E-07 58.8 2.5 30 1-30 56-85 (444)
153 3tqf_A HPR(Ser) kinase; transf 95.5 0.0032 1.1E-07 53.2 0.9 40 1-41 22-63 (181)
154 3n70_A Transport activator; si 95.5 0.0045 1.5E-07 49.2 1.7 19 1-19 30-48 (145)
155 3pfi_A Holliday junction ATP-d 95.5 0.0057 2E-07 54.9 2.5 27 1-27 61-87 (338)
156 2qp9_X Vacuolar protein sortin 95.5 0.0056 1.9E-07 56.3 2.4 32 1-32 90-121 (355)
157 3vfd_A Spastin; ATPase, microt 95.4 0.007 2.4E-07 56.0 3.0 31 1-31 154-184 (389)
158 3d8b_A Fidgetin-like protein 1 95.4 0.0079 2.7E-07 55.2 3.2 30 1-30 123-152 (357)
159 4b4t_I 26S protease regulatory 95.4 0.0072 2.5E-07 57.7 3.0 33 1-33 222-254 (437)
160 1odf_A YGR205W, hypothetical 3 95.3 0.0061 2.1E-07 54.8 2.2 30 1-30 37-74 (290)
161 1sxj_A Activator 1 95 kDa subu 95.3 0.0076 2.6E-07 58.1 3.0 30 1-30 83-112 (516)
162 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.0085 2.9E-07 54.2 3.0 28 1-28 51-79 (322)
163 1iy2_A ATP-dependent metallopr 95.3 0.0071 2.4E-07 53.1 2.4 29 1-29 79-107 (278)
164 3pxg_A Negative regulator of g 95.2 0.014 4.6E-07 55.7 4.4 29 1-29 207-245 (468)
165 1rz3_A Hypothetical protein rb 95.1 0.0083 2.8E-07 50.2 2.3 29 1-29 28-61 (201)
166 1hqc_A RUVB; extended AAA-ATPa 95.1 0.0085 2.9E-07 53.1 2.4 24 1-24 44-67 (324)
167 4fcw_A Chaperone protein CLPB; 95.0 0.0076 2.6E-07 53.1 1.6 19 1-19 53-71 (311)
168 1in4_A RUVB, holliday junction 94.8 0.012 4.2E-07 53.3 2.7 24 1-24 57-80 (334)
169 2w58_A DNAI, primosome compone 94.8 0.013 4.4E-07 48.5 2.6 19 1-19 60-78 (202)
170 1l8q_A Chromosomal replication 94.8 0.011 3.9E-07 52.8 2.3 128 1-134 43-179 (324)
171 3co5_A Putative two-component 94.7 0.0043 1.5E-07 49.3 -0.6 27 1-28 33-59 (143)
172 3u61_B DNA polymerase accessor 94.7 0.014 4.6E-07 52.1 2.6 28 1-28 54-81 (324)
173 2zan_A Vacuolar protein sortin 94.7 0.014 4.9E-07 55.2 2.9 30 1-30 173-203 (444)
174 1svm_A Large T antigen; AAA+ f 94.7 0.015 5.2E-07 54.3 3.0 26 1-26 175-200 (377)
175 1qvr_A CLPB protein; coiled co 94.7 0.084 2.9E-06 53.9 8.7 28 1-28 197-234 (854)
176 2v1u_A Cell division control p 94.6 0.014 4.8E-07 52.5 2.5 27 1-27 50-85 (387)
177 2xkx_A Disks large homolog 4; 94.6 0.018 6.3E-07 57.9 3.5 114 1-134 537-662 (721)
178 2r44_A Uncharacterized protein 94.6 0.011 3.8E-07 52.9 1.7 25 1-25 52-76 (331)
179 3uk6_A RUVB-like 2; hexameric 94.5 0.013 4.5E-07 53.0 2.1 27 1-27 76-104 (368)
180 2v9p_A Replication protein E1; 94.4 0.019 6.4E-07 52.2 2.8 25 1-25 132-156 (305)
181 3pvs_A Replication-associated 94.4 0.017 5.9E-07 54.9 2.6 27 1-27 56-82 (447)
182 1g8f_A Sulfate adenylyltransfe 94.3 0.021 7.2E-07 55.5 3.2 21 1-21 401-421 (511)
183 2bjv_A PSP operon transcriptio 94.2 0.017 6E-07 50.0 2.2 20 1-20 35-54 (265)
184 2ce7_A Cell division protein F 94.2 0.018 6.2E-07 55.4 2.4 30 1-30 55-84 (476)
185 2chg_A Replication factor C sm 94.2 0.017 5.8E-07 47.2 1.9 19 1-19 44-62 (226)
186 3hjn_A DTMP kinase, thymidylat 94.0 0.02 6.7E-07 48.3 1.9 19 2-20 7-25 (197)
187 3hu3_A Transitional endoplasmi 93.9 0.025 8.6E-07 54.5 2.8 31 1-31 244-274 (489)
188 2cvh_A DNA repair and recombin 93.9 0.024 8.3E-07 47.0 2.4 22 1-22 26-47 (220)
189 2qby_B CDC6 homolog 3, cell di 93.9 0.02 6.9E-07 51.7 2.0 29 1-29 51-90 (384)
190 2dhr_A FTSH; AAA+ protein, hex 93.9 0.024 8.3E-07 54.8 2.6 30 1-30 70-99 (499)
191 1r6b_X CLPA protein; AAA+, N-t 93.8 0.023 8E-07 57.0 2.4 28 1-28 494-521 (758)
192 1ye8_A Protein THEP1, hypothet 93.8 0.021 7.3E-07 47.3 1.7 20 1-20 6-25 (178)
193 1njg_A DNA polymerase III subu 93.7 0.023 8E-07 46.7 1.9 21 1-21 51-71 (250)
194 2qby_A CDC6 homolog 1, cell di 93.7 0.023 7.9E-07 50.9 2.0 28 1-28 51-84 (386)
195 2eyu_A Twitching motility prot 93.6 0.024 8.2E-07 50.0 1.9 19 1-19 31-49 (261)
196 3tvt_A Disks large 1 tumor sup 93.5 0.35 1.2E-05 43.5 9.4 105 5-133 107-231 (292)
197 1fnn_A CDC6P, cell division co 93.5 0.03 1E-06 50.5 2.4 27 1-27 50-80 (389)
198 2qgz_A Helicase loader, putati 93.5 0.025 8.7E-07 50.9 1.9 20 1-20 158-177 (308)
199 3cf2_A TER ATPase, transitiona 93.4 0.03 1E-06 57.3 2.4 31 1-31 244-274 (806)
200 3m6a_A ATP-dependent protease 93.4 0.035 1.2E-06 54.0 2.8 28 1-28 114-143 (543)
201 3pxi_A Negative regulator of g 93.4 0.033 1.1E-06 56.0 2.6 28 1-28 207-244 (758)
202 2ehv_A Hypothetical protein PH 93.4 0.027 9.3E-07 47.6 1.7 16 1-16 36-51 (251)
203 1p5z_B DCK, deoxycytidine kina 93.3 0.02 6.9E-07 49.8 0.9 25 1-25 30-55 (263)
204 2w0m_A SSO2452; RECA, SSPF, un 93.3 0.031 1E-06 46.5 1.9 19 1-19 29-47 (235)
205 4a74_A DNA repair and recombin 93.2 0.026 8.8E-07 47.1 1.4 18 1-18 31-48 (231)
206 2ocp_A DGK, deoxyguanosine kin 93.2 0.041 1.4E-06 47.1 2.7 20 2-21 9-28 (241)
207 1ypw_A Transitional endoplasmi 93.2 0.039 1.3E-06 56.3 2.8 30 1-30 244-273 (806)
208 1g8p_A Magnesium-chelatase 38 93.1 0.028 9.6E-07 50.2 1.6 21 1-21 51-71 (350)
209 3te6_A Regulatory protein SIR3 93.1 0.03 1E-06 51.1 1.7 19 1-19 51-69 (318)
210 2z4s_A Chromosomal replication 93.0 0.034 1.2E-06 52.5 2.1 28 1-28 136-168 (440)
211 1ypw_A Transitional endoplasmi 92.9 0.042 1.4E-06 56.1 2.6 31 1-31 517-547 (806)
212 3p32_A Probable GTPase RV1496/ 92.9 0.19 6.6E-06 45.8 6.9 89 1-91 85-178 (355)
213 2dr3_A UPF0273 protein PH0284; 92.9 0.033 1.1E-06 47.0 1.5 19 1-19 29-47 (247)
214 3tsz_A Tight junction protein 92.7 0.26 8.7E-06 46.1 7.5 91 1-133 238-330 (391)
215 3kta_A Chromosome segregation 92.7 0.044 1.5E-06 44.4 1.9 21 1-21 32-52 (182)
216 3cf2_A TER ATPase, transitiona 92.7 0.057 1.9E-06 55.2 3.2 32 1-32 517-548 (806)
217 1ko7_A HPR kinase/phosphatase; 92.6 0.034 1.2E-06 50.8 1.2 34 1-35 150-183 (314)
218 1sxj_C Activator 1 40 kDa subu 92.6 0.035 1.2E-06 50.0 1.4 21 1-21 52-72 (340)
219 1ojl_A Transcriptional regulat 92.5 0.063 2.2E-06 48.1 2.9 29 1-29 31-64 (304)
220 1n0w_A DNA repair protein RAD5 92.5 0.043 1.5E-06 46.2 1.7 18 1-18 30-47 (243)
221 1xjc_A MOBB protein homolog; s 92.3 0.05 1.7E-06 45.2 1.9 19 1-19 10-28 (169)
222 2f1r_A Molybdopterin-guanine d 92.3 0.029 1E-06 46.4 0.4 19 1-19 8-26 (171)
223 3jvv_A Twitching mobility prot 92.3 0.04 1.4E-06 51.0 1.3 19 1-19 129-147 (356)
224 2vp4_A Deoxynucleoside kinase; 92.3 0.041 1.4E-06 46.9 1.3 21 113-133 147-167 (230)
225 2gza_A Type IV secretion syste 92.3 0.041 1.4E-06 50.7 1.4 20 1-20 181-200 (361)
226 2v3c_C SRP54, signal recogniti 92.2 0.043 1.5E-06 52.1 1.5 28 1-28 105-137 (432)
227 3kl4_A SRP54, signal recogniti 92.2 0.066 2.3E-06 50.9 2.8 28 1-28 103-135 (433)
228 3b9q_A Chloroplast SRP recepto 92.1 0.051 1.8E-06 49.0 1.9 19 1-19 106-124 (302)
229 1qvr_A CLPB protein; coiled co 92.1 0.055 1.9E-06 55.3 2.3 27 1-27 594-623 (854)
230 2ewv_A Twitching motility prot 92.1 0.052 1.8E-06 50.3 1.9 24 1-24 142-169 (372)
231 1rj9_A FTSY, signal recognitio 92.1 0.052 1.8E-06 49.0 1.9 19 1-19 108-126 (304)
232 1sxj_E Activator 1 40 kDa subu 92.1 0.047 1.6E-06 48.9 1.5 19 1-19 42-60 (354)
233 1jr3_A DNA polymerase III subu 92.0 0.065 2.2E-06 48.1 2.4 21 1-21 44-64 (373)
234 1p9r_A General secretion pathw 92.0 0.057 1.9E-06 51.1 2.0 20 1-20 173-192 (418)
235 1sxj_D Activator 1 41 kDa subu 92.0 0.056 1.9E-06 48.2 1.9 20 1-20 64-83 (353)
236 2orw_A Thymidine kinase; TMTK, 91.9 0.052 1.8E-06 45.1 1.5 19 1-19 9-27 (184)
237 1htw_A HI0065; nucleotide-bind 91.9 0.065 2.2E-06 43.7 2.0 20 1-20 39-58 (158)
238 1lw7_A Transcriptional regulat 91.8 0.057 2E-06 49.4 1.9 21 1-21 176-196 (365)
239 2px0_A Flagellar biosynthesis 91.8 0.052 1.8E-06 48.8 1.5 28 1-28 111-144 (296)
240 3dm5_A SRP54, signal recogniti 91.7 0.076 2.6E-06 50.7 2.6 29 1-29 106-139 (443)
241 1iqp_A RFCS; clamp loader, ext 91.7 0.055 1.9E-06 47.5 1.5 20 1-20 52-71 (327)
242 3tif_A Uncharacterized ABC tra 91.6 0.051 1.8E-06 47.0 1.2 19 1-19 37-55 (235)
243 1pzn_A RAD51, DNA repair and r 91.6 0.07 2.4E-06 48.9 2.1 19 1-19 137-155 (349)
244 3nbx_X ATPase RAVA; AAA+ ATPas 91.6 0.066 2.3E-06 51.8 2.0 21 1-21 47-67 (500)
245 2zr9_A Protein RECA, recombina 91.6 0.25 8.6E-06 45.3 5.9 19 1-19 67-85 (349)
246 1r6b_X CLPA protein; AAA+, N-t 91.4 0.093 3.2E-06 52.6 3.0 19 1-19 213-231 (758)
247 1vma_A Cell division protein F 91.3 0.071 2.4E-06 48.2 1.9 28 1-28 110-142 (306)
248 2i3b_A HCR-ntpase, human cance 91.3 0.077 2.6E-06 44.5 1.9 19 1-19 7-25 (189)
249 1knx_A Probable HPR(Ser) kinas 91.2 0.083 2.8E-06 48.2 2.2 33 1-34 153-185 (312)
250 2chq_A Replication factor C sm 91.2 0.078 2.7E-06 46.3 2.0 19 1-19 44-62 (319)
251 2pt7_A CAG-ALFA; ATPase, prote 91.2 0.052 1.8E-06 49.4 0.9 20 1-20 177-196 (330)
252 3b85_A Phosphate starvation-in 91.2 0.067 2.3E-06 45.5 1.5 23 1-23 28-52 (208)
253 2zts_A Putative uncharacterize 91.2 0.092 3.2E-06 44.2 2.4 18 1-18 36-53 (251)
254 4ag6_A VIRB4 ATPase, type IV s 91.1 0.086 2.9E-06 48.5 2.3 33 1-33 41-76 (392)
255 3czq_A Putative polyphosphate 91.1 0.48 1.6E-05 43.0 7.1 102 2-134 93-212 (304)
256 2onk_A Molybdate/tungstate ABC 91.0 0.076 2.6E-06 46.2 1.7 19 1-19 30-48 (240)
257 3hr8_A Protein RECA; alpha and 90.9 0.3 1E-05 45.2 5.7 19 1-19 67-85 (356)
258 1cr0_A DNA primase/helicase; R 90.9 0.074 2.5E-06 46.8 1.5 19 1-19 41-59 (296)
259 1w5s_A Origin recognition comp 90.8 0.11 3.7E-06 47.2 2.6 19 1-19 58-76 (412)
260 1yrb_A ATP(GTP)binding protein 90.8 0.1 3.4E-06 44.7 2.3 28 1-28 20-51 (262)
261 1nlf_A Regulatory protein REPA 90.8 0.072 2.5E-06 46.6 1.4 19 1-19 36-54 (279)
262 2fz4_A DNA repair protein RAD2 90.8 0.1 3.6E-06 44.8 2.4 20 1-20 114-133 (237)
263 2og2_A Putative signal recogni 90.8 0.086 2.9E-06 48.9 1.9 19 1-19 163-181 (359)
264 2qen_A Walker-type ATPase; unk 90.8 0.084 2.9E-06 46.6 1.8 28 1-28 37-64 (350)
265 2oap_1 GSPE-2, type II secreti 90.7 0.069 2.4E-06 51.7 1.3 20 1-20 266-285 (511)
266 1np6_A Molybdopterin-guanine d 90.7 0.092 3.2E-06 43.5 1.9 19 1-19 12-30 (174)
267 3e70_C DPA, signal recognition 90.7 0.087 3E-06 48.1 1.9 19 1-19 135-153 (328)
268 4g1u_C Hemin import ATP-bindin 90.7 0.071 2.4E-06 47.1 1.2 19 1-19 43-61 (266)
269 2cbz_A Multidrug resistance-as 90.7 0.072 2.5E-06 46.1 1.2 19 1-19 37-55 (237)
270 2wsm_A Hydrogenase expression/ 90.7 0.1 3.6E-06 43.3 2.2 28 1-28 36-67 (221)
271 1zu4_A FTSY; GTPase, signal re 90.7 0.11 3.9E-06 47.1 2.6 28 1-28 111-143 (320)
272 3gfo_A Cobalt import ATP-bindi 90.6 0.073 2.5E-06 47.4 1.2 19 1-19 40-58 (275)
273 1sxj_B Activator 1 37 kDa subu 90.6 0.094 3.2E-06 45.9 1.9 20 1-20 48-67 (323)
274 2pcj_A ABC transporter, lipopr 90.6 0.065 2.2E-06 45.9 0.8 19 1-19 36-54 (224)
275 1xx6_A Thymidine kinase; NESG, 90.5 0.1 3.4E-06 44.0 1.9 19 1-19 14-32 (191)
276 1b0u_A Histidine permease; ABC 90.4 0.079 2.7E-06 46.6 1.2 19 1-19 38-56 (262)
277 1xp8_A RECA protein, recombina 90.3 0.43 1.5E-05 44.1 6.2 27 1-27 80-111 (366)
278 1j8m_F SRP54, signal recogniti 90.3 0.12 4.1E-06 46.4 2.4 28 1-28 104-136 (297)
279 1a5t_A Delta prime, HOLB; zinc 90.2 0.13 4.3E-06 46.5 2.5 22 1-22 30-51 (334)
280 1mv5_A LMRA, multidrug resista 90.2 0.083 2.9E-06 45.8 1.2 19 1-19 34-52 (243)
281 1dek_A Deoxynucleoside monopho 90.1 0.12 4.1E-06 45.3 2.1 27 1-27 7-33 (241)
282 2d2e_A SUFC protein; ABC-ATPas 90.1 0.1 3.6E-06 45.4 1.7 18 1-18 35-52 (250)
283 2b8t_A Thymidine kinase; deoxy 90.0 0.13 4.4E-06 44.5 2.3 19 1-19 18-36 (223)
284 1g6h_A High-affinity branched- 90.0 0.088 3E-06 46.1 1.2 19 1-19 39-57 (257)
285 1ji0_A ABC transporter; ATP bi 90.0 0.09 3.1E-06 45.5 1.2 19 1-19 38-56 (240)
286 2z43_A DNA repair and recombin 89.9 0.12 4.2E-06 46.5 2.1 19 1-19 113-131 (324)
287 2ff7_A Alpha-hemolysin translo 89.8 0.094 3.2E-06 45.7 1.2 19 1-19 41-59 (247)
288 2zu0_C Probable ATP-dependent 89.7 0.11 3.9E-06 45.7 1.7 18 1-18 52-69 (267)
289 2pze_A Cystic fibrosis transme 89.7 0.097 3.3E-06 45.0 1.2 19 1-19 40-58 (229)
290 1sgw_A Putative ABC transporte 89.6 0.099 3.4E-06 44.7 1.2 19 1-19 41-59 (214)
291 1f2t_A RAD50 ABC-ATPase; DNA d 89.6 0.12 4.2E-06 41.3 1.7 21 1-21 29-49 (149)
292 1v5w_A DMC1, meiotic recombina 89.6 0.15 5.3E-06 46.4 2.5 18 1-18 128-145 (343)
293 2ghi_A Transport protein; mult 89.6 0.1 3.4E-06 45.9 1.2 19 1-19 52-70 (260)
294 3shw_A Tight junction protein 89.5 0.55 1.9E-05 45.0 6.4 88 1-129 230-319 (468)
295 2olj_A Amino acid ABC transpor 89.4 0.1 3.5E-06 46.0 1.2 19 1-19 56-74 (263)
296 2fna_A Conserved hypothetical 89.4 0.15 5.1E-06 45.0 2.3 28 1-28 36-65 (357)
297 3tmk_A Thymidylate kinase; pho 89.4 0.17 5.8E-06 43.4 2.5 20 2-21 12-31 (216)
298 1vpl_A ABC transporter, ATP-bi 89.4 0.1 3.6E-06 45.8 1.2 19 1-19 47-65 (256)
299 2xxa_A Signal recognition part 89.3 0.11 3.8E-06 49.2 1.4 28 1-28 106-139 (433)
300 1qhl_A Protein (cell division 89.3 0.092 3.2E-06 45.5 0.8 20 1-20 33-52 (227)
301 2yz2_A Putative ABC transporte 89.2 0.11 3.8E-06 45.7 1.2 19 1-19 39-57 (266)
302 2r2a_A Uncharacterized protein 89.1 0.25 8.5E-06 41.8 3.3 18 1-18 11-28 (199)
303 2qi9_C Vitamin B12 import ATP- 89.1 0.11 3.9E-06 45.4 1.2 20 1-20 32-51 (249)
304 4dzz_A Plasmid partitioning pr 89.1 0.51 1.7E-05 38.4 5.2 26 2-27 9-39 (206)
305 2ihy_A ABC transporter, ATP-bi 88.9 0.12 4E-06 46.0 1.2 19 1-19 53-71 (279)
306 2nq2_C Hypothetical ABC transp 88.9 0.12 4.1E-06 45.2 1.2 19 1-19 37-55 (253)
307 3k1j_A LON protease, ATP-depen 88.8 0.15 5.1E-06 50.0 2.0 20 1-20 66-85 (604)
308 2ixe_A Antigen peptide transpo 88.8 0.12 4.2E-06 45.6 1.2 19 1-19 51-69 (271)
309 3nh6_A ATP-binding cassette SU 88.8 0.096 3.3E-06 47.4 0.5 19 1-19 86-104 (306)
310 2hf9_A Probable hydrogenase ni 88.8 0.14 4.8E-06 42.6 1.5 27 1-27 44-74 (226)
311 2vhj_A Ntpase P4, P4; non- hyd 88.6 0.19 6.6E-06 46.1 2.4 26 1-26 129-156 (331)
312 2r8r_A Sensor protein; KDPD, P 88.3 0.26 8.9E-06 42.9 2.9 28 1-28 12-44 (228)
313 2yhs_A FTSY, cell division pro 88.2 0.17 5.9E-06 49.0 1.9 19 1-19 299-317 (503)
314 2j37_W Signal recognition part 88.0 0.2 6.9E-06 48.5 2.2 28 1-28 107-139 (504)
315 2pjz_A Hypothetical protein ST 87.9 0.15 5.1E-06 45.0 1.2 19 1-19 36-54 (263)
316 3sop_A Neuronal-specific septi 87.8 0.17 5.6E-06 44.8 1.4 19 1-19 8-26 (270)
317 3rlf_A Maltose/maltodextrin im 87.8 0.18 6.2E-06 47.1 1.7 19 1-19 35-53 (381)
318 3fvq_A Fe(3+) IONS import ATP- 87.8 0.16 5.5E-06 47.1 1.4 19 1-19 36-54 (359)
319 3ld9_A DTMP kinase, thymidylat 87.7 0.23 7.9E-06 42.8 2.3 21 1-21 27-47 (223)
320 1z47_A CYSA, putative ABC-tran 87.7 0.19 6.3E-06 46.5 1.7 19 1-19 47-65 (355)
321 3llm_A ATP-dependent RNA helic 87.7 0.19 6.6E-06 42.7 1.7 15 1-15 82-96 (235)
322 2dyk_A GTP-binding protein; GT 87.6 0.22 7.4E-06 38.5 1.9 19 1-19 7-25 (161)
323 2ffh_A Protein (FFH); SRP54, s 87.5 0.25 8.5E-06 46.8 2.5 28 1-28 104-136 (425)
324 2yyz_A Sugar ABC transporter, 87.5 0.19 6.6E-06 46.5 1.7 19 1-19 35-53 (359)
325 2f9l_A RAB11B, member RAS onco 87.5 0.21 7.1E-06 40.8 1.8 18 1-18 11-28 (199)
326 1u0j_A DNA replication protein 87.5 0.26 9E-06 43.9 2.5 19 1-19 110-128 (267)
327 2it1_A 362AA long hypothetical 87.4 0.2 6.7E-06 46.5 1.7 19 1-19 35-53 (362)
328 1hyq_A MIND, cell division inh 87.4 0.65 2.2E-05 39.6 5.0 28 2-29 10-42 (263)
329 2i1q_A DNA repair and recombin 87.3 0.2 6.8E-06 44.8 1.6 18 1-18 104-121 (322)
330 1oix_A RAS-related protein RAB 87.1 0.19 6.6E-06 41.0 1.3 19 1-19 35-53 (191)
331 1g29_1 MALK, maltose transport 87.1 0.21 7.2E-06 46.4 1.7 19 1-19 35-53 (372)
332 3f9v_A Minichromosome maintena 87.1 0.12 4E-06 51.0 -0.1 25 1-25 333-357 (595)
333 2wji_A Ferrous iron transport 87.1 0.23 7.9E-06 39.3 1.7 18 1-18 9-26 (165)
334 1ls1_A Signal recognition part 87.0 0.23 7.7E-06 44.4 1.8 28 1-28 104-136 (295)
335 1v43_A Sugar-binding transport 87.0 0.22 7.4E-06 46.4 1.7 19 1-19 43-61 (372)
336 1e9r_A Conjugal transfer prote 87.0 0.24 8.1E-06 46.1 2.0 29 1-29 59-90 (437)
337 3bh0_A DNAB-like replicative h 86.9 0.28 9.5E-06 44.1 2.4 19 1-19 74-92 (315)
338 2ius_A DNA translocase FTSK; n 86.9 0.67 2.3E-05 44.9 5.2 17 1-17 173-189 (512)
339 3tui_C Methionine import ATP-b 86.8 0.22 7.6E-06 46.3 1.7 19 1-19 60-78 (366)
340 2ce2_X GTPase HRAS; signaling 86.8 0.23 7.7E-06 38.2 1.5 18 1-18 9-26 (166)
341 1z2a_A RAS-related protein RAB 86.7 0.25 8.6E-06 38.3 1.7 18 1-18 11-28 (168)
342 2www_A Methylmalonic aciduria 86.7 0.32 1.1E-05 44.4 2.7 28 1-28 80-112 (349)
343 3d31_A Sulfate/molybdate ABC t 86.7 0.18 6E-06 46.5 0.9 19 1-19 32-50 (348)
344 3b6e_A Interferon-induced heli 86.4 0.27 9.1E-06 40.2 1.9 19 1-19 54-72 (216)
345 3qks_A DNA double-strand break 86.4 0.23 7.8E-06 41.7 1.4 21 1-21 29-49 (203)
346 2bbs_A Cystic fibrosis transme 86.3 0.19 6.4E-06 45.0 0.8 19 1-19 70-88 (290)
347 2p67_A LAO/AO transport system 86.2 0.75 2.6E-05 41.7 4.9 30 1-30 62-96 (341)
348 3io5_A Recombination and repai 86.2 0.33 1.1E-05 44.6 2.5 19 1-19 34-52 (333)
349 2wjg_A FEOB, ferrous iron tran 86.1 0.28 9.4E-06 39.2 1.7 18 1-18 13-30 (188)
350 2ged_A SR-beta, signal recogni 86.0 0.29 9.9E-06 39.3 1.9 19 1-19 54-72 (193)
351 1oxx_K GLCV, glucose, ABC tran 86.0 0.18 6.1E-06 46.5 0.6 19 1-19 37-55 (353)
352 4akg_A Glutathione S-transfera 86.0 0.35 1.2E-05 55.5 3.0 27 1-27 651-679 (2695)
353 2r6a_A DNAB helicase, replicat 86.0 0.27 9.3E-06 46.3 1.9 19 1-19 209-227 (454)
354 3gd7_A Fusion complex of cysti 85.9 0.23 8E-06 46.4 1.4 18 1-18 53-70 (390)
355 2zej_A Dardarin, leucine-rich 85.7 0.24 8.3E-06 39.9 1.2 17 1-17 8-24 (184)
356 2qm8_A GTPase/ATPase; G protei 85.7 0.35 1.2E-05 44.0 2.4 19 1-19 61-79 (337)
357 3lda_A DNA repair protein RAD5 85.7 0.25 8.4E-06 46.4 1.4 18 1-18 184-201 (400)
358 3qf7_A RAD50; ABC-ATPase, ATPa 85.6 0.28 9.5E-06 45.1 1.7 19 1-19 29-47 (365)
359 1kao_A RAP2A; GTP-binding prot 85.5 0.33 1.1E-05 37.4 1.9 18 1-18 9-26 (167)
360 1nrj_B SR-beta, signal recogni 85.4 0.32 1.1E-05 40.0 1.9 19 1-19 18-36 (218)
361 1u8z_A RAS-related protein RAL 85.4 0.32 1.1E-05 37.5 1.7 18 1-18 10-27 (168)
362 1u94_A RECA protein, recombina 85.4 0.35 1.2E-05 44.5 2.3 19 1-19 69-87 (356)
363 1ek0_A Protein (GTP-binding pr 85.1 0.33 1.1E-05 37.6 1.7 18 1-18 9-26 (170)
364 1nij_A Hypothetical protein YJ 85.1 0.32 1.1E-05 43.7 1.8 19 1-19 10-28 (318)
365 2erx_A GTP-binding protein DI- 85.0 0.34 1.1E-05 37.6 1.7 17 1-17 9-25 (172)
366 1z0j_A RAB-22, RAS-related pro 84.9 0.36 1.2E-05 37.5 1.9 18 1-18 12-29 (170)
367 1ky3_A GTP-binding protein YPT 84.9 0.34 1.2E-05 38.1 1.7 18 1-18 14-31 (182)
368 2npi_A Protein CLP1; CLP1-PCF1 84.7 0.29 9.8E-06 46.7 1.4 19 1-19 144-162 (460)
369 3q85_A GTP-binding protein REM 84.6 0.37 1.3E-05 37.6 1.7 17 1-17 8-24 (169)
370 2ipc_A Preprotein translocase 84.6 1.1 3.6E-05 46.7 5.5 70 1-93 382-451 (997)
371 2yv5_A YJEQ protein; hydrolase 84.5 0.34 1.2E-05 43.2 1.7 18 1-19 171-188 (302)
372 1g16_A RAS-related protein SEC 84.5 0.32 1.1E-05 37.8 1.4 18 1-18 9-26 (170)
373 3b5x_A Lipid A export ATP-bind 84.3 0.34 1.2E-05 47.2 1.8 19 1-19 375-393 (582)
374 2q6t_A DNAB replication FORK h 84.2 0.34 1.2E-05 45.6 1.6 19 1-19 206-224 (444)
375 1r2q_A RAS-related protein RAB 84.2 0.41 1.4E-05 37.0 1.9 18 1-18 12-29 (170)
376 1rif_A DAR protein, DNA helica 84.1 0.47 1.6E-05 41.2 2.4 18 1-18 134-151 (282)
377 3con_A GTPase NRAS; structural 84.0 0.39 1.3E-05 38.4 1.7 18 1-18 27-44 (190)
378 1z08_A RAS-related protein RAB 83.9 0.43 1.5E-05 37.1 1.9 18 1-18 12-29 (170)
379 1c1y_A RAS-related protein RAP 83.9 0.41 1.4E-05 37.0 1.7 18 1-18 9-26 (167)
380 2nzj_A GTP-binding protein REM 83.8 0.41 1.4E-05 37.4 1.7 18 1-18 10-27 (175)
381 3qkt_A DNA double-strand break 83.8 0.38 1.3E-05 43.5 1.7 19 1-19 29-47 (339)
382 1pui_A ENGB, probable GTP-bind 83.7 0.18 6.3E-06 41.2 -0.4 18 1-18 32-49 (210)
383 1r8s_A ADP-ribosylation factor 83.6 0.48 1.6E-05 36.7 2.0 18 1-18 6-23 (164)
384 1wms_A RAB-9, RAB9, RAS-relate 83.5 0.43 1.5E-05 37.5 1.7 18 1-18 13-30 (177)
385 1e69_A Chromosome segregation 83.4 0.35 1.2E-05 43.3 1.3 19 1-19 30-48 (322)
386 1svi_A GTP-binding protein YSX 83.0 0.38 1.3E-05 38.6 1.3 18 1-18 29-46 (195)
387 3lxx_A GTPase IMAP family memb 83.0 0.44 1.5E-05 40.3 1.7 18 1-18 35-52 (239)
388 3qf4_B Uncharacterized ABC tra 83.0 0.33 1.1E-05 47.6 1.0 20 1-20 387-406 (598)
389 2gj8_A MNME, tRNA modification 82.9 0.4 1.4E-05 38.3 1.4 18 1-18 10-27 (172)
390 4dsu_A GTPase KRAS, isoform 2B 82.9 0.46 1.6E-05 37.6 1.7 18 1-18 10-27 (189)
391 3b60_A Lipid A export ATP-bind 82.9 0.31 1.1E-05 47.5 0.8 20 1-20 375-394 (582)
392 2hxs_A RAB-26, RAS-related pro 82.9 0.49 1.7E-05 37.1 1.9 18 1-18 12-29 (178)
393 3tw8_B RAS-related protein RAB 82.9 0.44 1.5E-05 37.4 1.5 17 1-17 15-31 (181)
394 3pqc_A Probable GTP-binding pr 82.8 0.4 1.4E-05 38.2 1.3 18 1-18 29-46 (195)
395 2lkc_A Translation initiation 82.8 0.47 1.6E-05 37.3 1.7 18 1-18 14-31 (178)
396 2y8e_A RAB-protein 6, GH09086P 82.7 0.42 1.4E-05 37.4 1.4 18 1-18 20-37 (179)
397 3q72_A GTP-binding protein RAD 82.6 0.4 1.4E-05 37.2 1.2 16 1-16 8-23 (166)
398 4akg_A Glutathione S-transfera 82.5 7.4 0.00025 44.8 11.7 48 1-80 1615-1662(2695)
399 1upt_A ARL1, ADP-ribosylation 82.5 0.53 1.8E-05 36.6 1.9 18 1-18 13-30 (171)
400 2z0m_A 337AA long hypothetical 82.4 0.64 2.2E-05 40.4 2.6 20 1-20 37-56 (337)
401 1u0l_A Probable GTPase ENGC; p 82.3 0.38 1.3E-05 42.9 1.0 19 1-19 175-193 (301)
402 2j9r_A Thymidine kinase; TK1, 82.3 0.52 1.8E-05 40.6 1.9 19 1-19 34-52 (214)
403 2woo_A ATPase GET3; tail-ancho 82.3 0.73 2.5E-05 41.6 3.0 27 2-28 26-57 (329)
404 2yl4_A ATP-binding cassette SU 82.3 0.35 1.2E-05 47.3 0.8 20 1-20 376-395 (595)
405 1z0f_A RAB14, member RAS oncog 82.2 0.54 1.9E-05 36.7 1.9 18 1-18 21-38 (179)
406 2a9k_A RAS-related protein RAL 82.2 0.52 1.8E-05 37.2 1.7 18 1-18 24-41 (187)
407 3bc1_A RAS-related protein RAB 82.2 0.54 1.9E-05 37.2 1.9 18 1-18 17-34 (195)
408 2fn4_A P23, RAS-related protei 82.2 0.47 1.6E-05 37.2 1.5 18 1-18 15-32 (181)
409 2fwr_A DNA repair protein RAD2 82.2 0.62 2.1E-05 43.3 2.5 21 1-21 114-134 (472)
410 3ea0_A ATPase, para family; al 82.1 0.76 2.6E-05 38.5 2.9 27 3-29 13-45 (245)
411 2qag_B Septin-6, protein NEDD5 82.1 0.45 1.6E-05 45.1 1.5 18 1-18 48-65 (427)
412 1yqt_A RNAse L inhibitor; ATP- 82.0 0.48 1.6E-05 46.0 1.7 19 1-19 53-71 (538)
413 3euj_A Chromosome partition pr 81.8 0.49 1.7E-05 45.5 1.7 19 1-19 35-53 (483)
414 2cxx_A Probable GTP-binding pr 81.7 0.46 1.6E-05 37.8 1.3 18 1-18 7-24 (190)
415 3clv_A RAB5 protein, putative; 81.7 0.58 2E-05 37.2 1.9 18 1-18 13-30 (208)
416 3bgw_A DNAB-like replicative h 81.6 0.56 1.9E-05 44.4 2.0 19 1-19 203-221 (444)
417 2efe_B Small GTP-binding prote 81.5 0.59 2E-05 36.8 1.9 18 1-18 18-35 (181)
418 3kkq_A RAS-related protein M-R 81.5 0.56 1.9E-05 37.1 1.7 18 1-18 24-41 (183)
419 2oil_A CATX-8, RAS-related pro 81.5 0.6 2E-05 37.5 1.9 18 1-18 31-48 (193)
420 1mh1_A RAC1; GTP-binding, GTPa 81.4 0.6 2.1E-05 36.8 1.9 18 1-18 11-28 (186)
421 3zq6_A Putative arsenical pump 81.4 0.71 2.4E-05 41.4 2.6 27 2-28 21-52 (324)
422 2obl_A ESCN; ATPase, hydrolase 81.2 0.66 2.2E-05 42.5 2.3 21 1-21 77-97 (347)
423 2rcn_A Probable GTPase ENGC; Y 81.1 0.55 1.9E-05 43.4 1.7 19 1-19 221-239 (358)
424 4a1f_A DNAB helicase, replicat 81.0 0.59 2E-05 42.8 1.9 19 1-19 52-70 (338)
425 3qf4_A ABC transporter, ATP-bi 80.9 0.34 1.2E-05 47.4 0.2 20 1-20 375-394 (587)
426 4a82_A Cystic fibrosis transme 80.9 0.28 9.7E-06 47.8 -0.3 19 1-19 373-391 (578)
427 2bov_A RAla, RAS-related prote 80.8 0.61 2.1E-05 37.6 1.7 18 1-18 20-37 (206)
428 2bme_A RAB4A, RAS-related prot 80.7 0.54 1.9E-05 37.3 1.4 18 1-18 16-33 (186)
429 2qnr_A Septin-2, protein NEDD5 80.7 0.45 1.5E-05 42.4 1.0 17 1-17 24-40 (301)
430 2g6b_A RAS-related protein RAB 80.7 0.67 2.3E-05 36.4 1.9 18 1-18 16-33 (180)
431 2xj4_A MIPZ; replication, cell 80.6 0.97 3.3E-05 39.5 3.1 29 2-30 12-45 (286)
432 3ug7_A Arsenical pump-driving 80.6 0.89 3E-05 41.4 2.9 27 2-28 33-64 (349)
433 1tf7_A KAIC; homohexamer, hexa 80.6 0.51 1.7E-05 45.3 1.4 15 1-15 45-59 (525)
434 1m7b_A RND3/RHOE small GTP-bin 80.6 0.58 2E-05 37.4 1.5 18 1-18 13-30 (184)
435 3upu_A ATP-dependent DNA helic 80.5 0.69 2.4E-05 43.5 2.2 19 1-19 51-69 (459)
436 2dpy_A FLII, flagellum-specifi 80.5 0.71 2.4E-05 43.7 2.3 20 1-20 163-182 (438)
437 1p6x_A Thymidine kinase; P-loo 80.4 0.66 2.3E-05 42.5 2.0 20 2-21 14-33 (334)
438 1vg8_A RAS-related protein RAB 80.1 0.7 2.4E-05 37.4 1.9 18 1-18 14-31 (207)
439 3vkg_A Dynein heavy chain, cyt 80.0 0.85 2.9E-05 53.1 3.1 28 1-28 610-639 (3245)
440 3bwd_D RAC-like GTP-binding pr 80.0 0.72 2.5E-05 36.3 1.9 18 1-18 14-31 (182)
441 1ksh_A ARF-like protein 2; sma 80.0 0.64 2.2E-05 37.0 1.6 18 1-18 24-41 (186)
442 3tkl_A RAS-related protein RAB 79.9 0.69 2.4E-05 37.0 1.7 18 1-18 22-39 (196)
443 3t5g_A GTP-binding protein RHE 79.8 0.61 2.1E-05 36.9 1.4 17 1-17 12-28 (181)
444 1ihu_A Arsenical pump-driving 79.7 0.93 3.2E-05 44.0 2.9 28 1-28 14-46 (589)
445 1tq4_A IIGP1, interferon-induc 79.7 0.57 2E-05 44.1 1.3 19 1-19 75-93 (413)
446 3kjh_A CO dehydrogenase/acetyl 79.7 0.73 2.5E-05 38.4 1.9 27 2-28 7-38 (254)
447 3czp_A Putative polyphosphate 79.7 3.1 0.00011 40.1 6.5 102 2-136 50-171 (500)
448 2fh5_B SR-beta, signal recogni 79.7 0.73 2.5E-05 37.7 1.9 18 1-18 13-30 (214)
449 1q57_A DNA primase/helicase; d 79.6 0.54 1.8E-05 44.8 1.2 19 1-19 248-266 (503)
450 1m2o_B GTP-binding protein SAR 79.6 0.65 2.2E-05 37.6 1.5 18 1-18 29-46 (190)
451 3szr_A Interferon-induced GTP- 79.6 0.76 2.6E-05 45.2 2.2 19 1-19 51-69 (608)
452 2gf9_A RAS-related protein RAB 79.4 0.72 2.5E-05 36.9 1.7 18 1-18 28-45 (189)
453 3ozx_A RNAse L inhibitor; ATP 79.3 0.56 1.9E-05 45.6 1.2 19 1-19 300-318 (538)
454 3auy_A DNA double-strand break 79.3 0.6 2.1E-05 42.7 1.3 17 1-17 31-47 (371)
455 2p5s_A RAS and EF-hand domain 79.3 0.78 2.7E-05 37.2 1.9 18 1-18 34-51 (199)
456 1tf7_A KAIC; homohexamer, hexa 79.2 0.6 2E-05 44.8 1.3 19 1-19 287-305 (525)
457 1yqt_A RNAse L inhibitor; ATP- 79.2 0.68 2.3E-05 44.9 1.7 19 1-19 318-336 (538)
458 1g3q_A MIND ATPase, cell divis 79.1 1.2 4.1E-05 37.1 3.1 28 2-29 10-42 (237)
459 2a5j_A RAS-related protein RAB 79.1 0.8 2.7E-05 36.8 1.9 18 1-18 27-44 (191)
460 4b3f_X DNA-binding protein smu 79.1 0.8 2.7E-05 45.1 2.2 19 1-19 211-229 (646)
461 2atv_A RERG, RAS-like estrogen 79.0 0.79 2.7E-05 37.0 1.9 18 1-18 34-51 (196)
462 3t1o_A Gliding protein MGLA; G 79.0 0.84 2.9E-05 36.3 2.0 20 1-20 20-39 (198)
463 1w1w_A Structural maintenance 79.0 0.86 2.9E-05 42.4 2.3 21 1-21 32-52 (430)
464 2iwr_A Centaurin gamma 1; ANK 79.0 0.7 2.4E-05 36.4 1.5 18 1-18 13-30 (178)
465 2qag_C Septin-7; cell cycle, c 78.9 0.59 2E-05 44.0 1.2 18 1-18 37-54 (418)
466 1e2k_A Thymidine kinase; trans 78.9 0.63 2.2E-05 42.6 1.3 20 2-21 11-30 (331)
467 3ozx_A RNAse L inhibitor; ATP 78.7 0.6 2.1E-05 45.4 1.2 19 1-19 31-49 (538)
468 1zbd_A Rabphilin-3A; G protein 78.7 0.78 2.7E-05 37.1 1.7 18 1-18 14-31 (203)
469 3q9l_A Septum site-determining 78.7 1.3 4.3E-05 37.5 3.1 27 2-28 10-41 (260)
470 2ph1_A Nucleotide-binding prot 78.7 1.2 4.2E-05 38.2 3.1 29 2-30 26-59 (262)
471 1z6t_A APAF-1, apoptotic prote 78.7 0.72 2.4E-05 44.3 1.7 17 1-17 153-169 (591)
472 3czp_A Putative polyphosphate 78.5 7.2 0.00025 37.6 8.7 102 2-135 307-427 (500)
473 1z06_A RAS-related protein RAB 78.5 0.84 2.9E-05 36.5 1.9 18 1-18 26-43 (189)
474 2gf0_A GTP-binding protein DI- 78.5 0.73 2.5E-05 36.9 1.5 18 1-18 14-31 (199)
475 3j16_B RLI1P; ribosome recycli 78.4 0.73 2.5E-05 45.5 1.7 19 1-19 109-127 (608)
476 3ihw_A Centg3; RAS, centaurin, 78.4 0.84 2.9E-05 36.8 1.9 18 1-18 26-43 (184)
477 1x3s_A RAS-related protein RAB 78.4 0.86 3E-05 36.3 1.9 18 1-18 21-38 (195)
478 4aby_A DNA repair protein RECN 78.3 0.39 1.3E-05 44.1 -0.3 21 1-21 66-86 (415)
479 1fzq_A ADP-ribosylation factor 78.2 0.68 2.3E-05 37.1 1.2 18 1-18 22-39 (181)
480 2fg5_A RAB-22B, RAS-related pr 78.2 0.75 2.6E-05 37.1 1.5 18 1-18 29-46 (192)
481 4f4c_A Multidrug resistance pr 78.2 0.46 1.6E-05 51.0 0.2 19 1-19 1111-1129(1321)
482 1moz_A ARL1, ADP-ribosylation 78.1 0.48 1.7E-05 37.5 0.3 16 1-16 24-39 (183)
483 3cph_A RAS-related protein SEC 78.1 0.83 2.9E-05 37.1 1.7 18 1-18 26-43 (213)
484 3c5c_A RAS-like protein 12; GD 78.1 0.88 3E-05 36.6 1.9 18 1-18 27-44 (187)
485 3bk7_A ABC transporter ATP-bin 78.1 0.76 2.6E-05 45.3 1.7 19 1-19 388-406 (607)
486 3bk7_A ABC transporter ATP-bin 78.0 0.65 2.2E-05 45.8 1.2 19 1-19 123-141 (607)
487 2bcg_Y Protein YP2, GTP-bindin 78.0 0.78 2.7E-05 37.3 1.5 18 1-18 14-31 (206)
488 2gxq_A Heat resistant RNA depe 77.8 1.1 3.7E-05 36.4 2.4 16 1-16 44-59 (207)
489 2il1_A RAB12; G-protein, GDP, 77.8 0.81 2.8E-05 37.0 1.6 17 1-17 32-48 (192)
490 3dz8_A RAS-related protein RAB 77.7 0.84 2.9E-05 36.7 1.6 19 1-19 29-47 (191)
491 3lxw_A GTPase IMAP family memb 77.4 0.88 3E-05 39.1 1.8 18 1-18 27-44 (247)
492 3niq_A 3-guanidinopropionase; 77.3 4 0.00014 37.0 6.2 56 63-122 95-150 (326)
493 1zj6_A ADP-ribosylation factor 77.3 0.8 2.7E-05 36.6 1.4 18 1-18 22-39 (187)
494 2gk6_A Regulator of nonsense t 77.3 0.98 3.3E-05 44.4 2.2 19 1-19 201-219 (624)
495 3oes_A GTPase rhebl1; small GT 77.2 0.84 2.9E-05 37.1 1.5 18 1-18 30-47 (201)
496 1byi_A Dethiobiotin synthase; 77.1 1 3.5E-05 37.3 2.0 27 3-29 10-39 (224)
497 1zd9_A ADP-ribosylation factor 76.9 1 3.4E-05 36.2 1.9 18 1-18 28-45 (188)
498 3j16_B RLI1P; ribosome recycli 76.9 0.87 3E-05 45.0 1.7 19 1-19 384-402 (608)
499 3reg_A RHO-like small GTPase; 76.8 1 3.5E-05 36.2 1.9 18 1-18 29-46 (194)
500 2xtp_A GTPase IMAP family memb 76.7 0.82 2.8E-05 39.0 1.3 18 1-18 28-45 (260)
No 1
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=100.00 E-value=3.9e-74 Score=535.65 Aligned_cols=265 Identities=44% Similarity=0.799 Sum_probs=233.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCC-CCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDP-EADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~-~~~~~~~~f~~~a~~~i~~ 79 (269)
+||||||||+||+.||+++|++|||+||||||++||||||||+++|+.++||||+|+.+| .+.|++++|+++|.++|++
T Consensus 46 ~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a~~~i~~ 125 (339)
T 3a8t_A 46 MGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAGKAVSE 125 (339)
T ss_dssp ECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchh--h-----------hh--ccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHH
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSI--I-----------NF--RANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVD 144 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~--~-----------~~--~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~ 144 (269)
++++|++||+|||||+|+++++.|.. . .+ ..++++++|||++++++|++||++|++.|+++||++
T Consensus 126 i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~~~Ml~~Gl~e 205 (339)
T 3a8t_A 126 ITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFD 205 (339)
T ss_dssp HHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhhccHhhhccHHH
Confidence 99999999999999999999999741 0 00 135788999999999999999999999999999999
Q ss_pred HHHhhcCCCCC-------cccccccccCHHHHHHHHhcccCcc----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044048 145 EVRDMFDPNAD-------YNRGIRRSIGAPELHEYLKLESNVK----NETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQK 213 (269)
Q Consensus 145 Ev~~l~~~~~~-------~~~~~~qaIGykE~~~yl~~~~~~d----~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW 213 (269)
||+.|++.+.. +..|++|+||||||++||+|+...+ ...++..++..+++|++.++.+||||||||+||
T Consensus 206 Ev~~L~~~~~~~~~~~~~~~~~~~~aIGykE~~~yl~g~~~~~~~~~~~~~~~~~~~~l~eaie~ik~~TR~yAKRQ~tW 285 (339)
T 3a8t_A 206 ELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGK 285 (339)
T ss_dssp HHHHHCCTTCSCTTSCGGGSCGGGGSTTHHHHHHHHHHSCTTCCCCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccccchhccHHHHHhhHHHHHHHHcCcccccccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987532 2378999999999999999942111 111223567789999999999999999999999
Q ss_pred HhchhcccCCeeEEeccchhhhhhcc--cccchHHHHHHHhhhHHHHHHHHHhcc
Q 044048 214 IKRLRNELGWKIHRIDATYVLEGRMK--DAEDAEDAWEEVVLKPGVAIVEDFLNK 266 (269)
Q Consensus 214 ~r~~~~~~~~~i~~~d~t~~~~~~~~--~~~~~~~~W~~~V~~pa~~i~~~fl~~ 266 (269)
||++.+. +|+++++|+|+++...++ .+...++.|+++|.+||++||++||.+
T Consensus 286 fr~~~~~-~w~i~~lDat~~~~~~~~~~~~~~~~~~W~~~V~~pa~~iv~~fl~~ 339 (339)
T 3a8t_A 286 ILRLKGA-GWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVSRFLDE 339 (339)
T ss_dssp HHHHTTS-CCCEEEEECHHHHHHHHSTTTTHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred HccCCCC-CCceeeeccccchhhhhhccccchhhHHHHHHHHHHHHHHHHHHhhC
Confidence 9998764 899999999999755444 455667899999999999999999964
No 2
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=100.00 E-value=3.2e-72 Score=533.19 Aligned_cols=248 Identities=32% Similarity=0.590 Sum_probs=218.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||+||..||+.++++|||+|||||||+|+||||||+.+|+.++||||+|+++|.+.|++++|.++|.++|++|
T Consensus 8 ~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~~i~~i 87 (409)
T 3eph_A 8 AGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNAIEDI 87 (409)
T ss_dssp EECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred ECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcchh---h---------------------------------------------------
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSI---I--------------------------------------------------- 106 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~---~--------------------------------------------------- 106 (269)
+++|++||+|||||||++||++|.. .
T Consensus 88 ~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~~~~~~~g~~~L~~~L~~~DP~~A~rihpnd~~Ri~RALEV~ 167 (409)
T 3eph_A 88 HRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIY 167 (409)
T ss_dssp HTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHHHHHTCSSSSSHHHHHHHSCHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHHHHHhccCHHHHHHHHHHhCHHHHHhcCcccHHHHHHHHHHH
Confidence 9999999999999999999997621 0
Q ss_pred --------hh------ccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCCC-------CcccccccccC
Q 044048 107 --------NF------RANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDPNA-------DYNRGIRRSIG 165 (269)
Q Consensus 107 --------~~------~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~~~-------~~~~~~~qaIG 165 (269)
.+ ..+|++++|||++++++|++||++||+.|+++||++||+.|++.+. +++.+++|+||
T Consensus 168 ~~TG~~~S~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~~~~~~~~~~~~~~~aIG 247 (409)
T 3eph_A 168 YKTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIG 247 (409)
T ss_dssp HHHCSCHHHHHHTCCCCCSSEEEEEEEECCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCCGGGTTSGGGGSTT
T ss_pred HHHCCCHHHHHhhccCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHhccccccccccccccchhccc
Confidence 00 1257899999999999999999999999999999999999987421 13468999999
Q ss_pred HHHHHHHHhcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-cccCCeeEEeccchhhhhhcccccch
Q 044048 166 APELHEYLKLESNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRLR-NELGWKIHRIDATYVLEGRMKDAEDA 244 (269)
Q Consensus 166 ykE~~~yl~~~~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~~-~~~~~~i~~~d~t~~~~~~~~~~~~~ 244 (269)
||||++||+|+.+.. +..+++|++.++.+||||||||+||||++. ...+++++++|+|++
T Consensus 248 YkE~~~yL~g~~~~~--------e~~l~eaie~ik~~TRqyAKRQ~TWfR~~~~~~~~~~i~~lD~t~~----------- 308 (409)
T 3eph_A 248 FKEFLPWLTGKTDDN--------TVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDL----------- 308 (409)
T ss_dssp TGGGGGGGC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTCEEEEECSCT-----------
T ss_pred HHHHHHHHcCCCccc--------ccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEcCCCh-----------
Confidence 999999999953200 012789999999999999999999999862 222457999999998
Q ss_pred HHHHHHHhhhHHHHHHHHHhcccc
Q 044048 245 EDAWEEVVLKPGVAIVEDFLNKIK 268 (269)
Q Consensus 245 ~~~W~~~V~~pa~~i~~~fl~~~~ 268 (269)
+.|++.|.+||++|+++||.++.
T Consensus 309 -~~W~~~V~~pa~~iv~~fl~~~~ 331 (409)
T 3eph_A 309 -SQWDTNASQRAIAISNDFISNRP 331 (409)
T ss_dssp -TTCTTTTHHHHHHHHHHHHTTCC
T ss_pred -hHHHHHHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999864
No 3
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=100.00 E-value=5.5e-69 Score=496.49 Aligned_cols=213 Identities=35% Similarity=0.600 Sum_probs=197.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||+||..||+.++++|||+||||||++|||||+||+++|+.+|||||+|+++|++.||+++|+++|.++|+++
T Consensus 9 ~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~~i~~i 88 (322)
T 3exa_A 9 VGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATPLITEI 88 (322)
T ss_dssp ECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred ECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhh------------------------------------------------------
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSII------------------------------------------------------ 106 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~------------------------------------------------------ 106 (269)
+++|++||+|||||+|++||++|...
T Consensus 89 ~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~i~pnd~~Ri~RALEV 168 (322)
T 3exa_A 89 HERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRALEI 168 (322)
T ss_dssp HHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSCTTCHHHHHHHHHH
T ss_pred HhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCcccHHHHHHHHHH
Confidence 99999999999999999999987310
Q ss_pred ---------hh-------ccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCCCCcccccccccCHHHHH
Q 044048 107 ---------NF-------RANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDPNADYNRGIRRSIGAPELH 170 (269)
Q Consensus 107 ---------~~-------~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~~~~~~~~~~qaIGykE~~ 170 (269)
.+ ..+|++++++|++||++|++||++||+.|+++||++||+.|++.+ +.+.+++|+|||||++
T Consensus 169 ~~~TG~~~S~~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~-~~~~~a~~aIGYkE~~ 247 (322)
T 3exa_A 169 IKLTGKTVTEQARHEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYDRG-IRDCQSVQAIGYKEMY 247 (322)
T ss_dssp HHHTC--------------CCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT-CCSSTGGGSTTTHHHH
T ss_pred HHHHCCCHHHHhhhccCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcC-CCcCccceeeeHHHHH
Confidence 00 024788999999999999999999999999999999999999887 6778899999999999
Q ss_pred HHHhcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCeeEEeccch
Q 044048 171 EYLKLESNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRLRNELGWKIHRIDATY 232 (269)
Q Consensus 171 ~yl~~~~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~~~~~~~~i~~~d~t~ 232 (269)
+||+|+.+ +++|++.++.+||||||||+||||+.. +++|+|+++
T Consensus 248 ~yL~G~~s-------------l~eaie~i~~~TR~yAKRQ~TWfR~~~-----~~~w~~~~~ 291 (322)
T 3exa_A 248 DYLDGNVT-------------LEEAIDTLKRNSRRYAKRQLTWFRNKA-----NVTWFDMTD 291 (322)
T ss_dssp HHHHTSSC-------------HHHHHHHHHHHHHHHHHHHHHHHHTST-----TEEEEECTT
T ss_pred HHHCCCCC-------------HHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCeEeCCCC
Confidence 99999986 789999999999999999999999864 478888754
No 4
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=100.00 E-value=1.1e-68 Score=493.74 Aligned_cols=215 Identities=28% Similarity=0.439 Sum_probs=198.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||+||..||+.++++|||+||||||++|||||+||+++|+.+|||||+|+++|++.||+++|+++|.++|+++
T Consensus 16 ~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~~~i~~i 95 (316)
T 3foz_A 16 MGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEMADI 95 (316)
T ss_dssp ECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhh------------------------------------------------------
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSII------------------------------------------------------ 106 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~------------------------------------------------------ 106 (269)
+++|++||+|||||+|++||++|...
T Consensus 96 ~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP~~A~ri~pnd~~Ri~RALEV~ 175 (316)
T 3foz_A 96 TAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVF 175 (316)
T ss_dssp HHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHhCHHHHhhCCCccHHHHHHHHHHH
Confidence 99999999999999999999988410
Q ss_pred --------hh------ccccceEEEEEeC-CHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCC-CCcccccccccCHHHHH
Q 044048 107 --------NF------RANYDCCFIWMDV-DPLVLYKYVGIRVDKMVETGLVDEVRDMFDPN-ADYNRGIRRSIGAPELH 170 (269)
Q Consensus 107 --------~~------~~~~~~~~~~l~~-~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~~-~~~~~~~~qaIGykE~~ 170 (269)
.+ ..+|++++++|++ ||++|++||++||+.|+++||++||+.|++.+ .+.+.+++|+|||||++
T Consensus 176 ~~TG~~~S~~~~~~~~~~~~~~~~i~L~~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~~~~~~~~~~~aIGYkE~~ 255 (316)
T 3foz_A 176 FISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMW 255 (316)
T ss_dssp HHHSSCHHHHHTSCCCCCSSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCCCTTSTTTTSTTHHHHH
T ss_pred HHHCCCHHHHhhccCCCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCCCccCccceeeehhhHH
Confidence 00 0247889999999 99999999999999999999999999999875 56677899999999999
Q ss_pred HHHhcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCeeEEeccchh
Q 044048 171 EYLKLESNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRLRNELGWKIHRIDATYV 233 (269)
Q Consensus 171 ~yl~~~~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~~~~~~~~i~~~d~t~~ 233 (269)
+||+|+.+ +++|++.++++||||||||+||||+.. +++|+|.++.
T Consensus 256 ~yL~G~~s-------------~~eai~~~~~~TR~yAKRQ~TWfR~~~-----~~~w~~~~~~ 300 (316)
T 3foz_A 256 SYLEGEIS-------------YDEMVYRGVCATRQLAKRQITWLRGWE-----GVHWLDSEKP 300 (316)
T ss_dssp HHHHTSSC-------------HHHHHHHHHHHHHHHHHHHHHHHHSCS-----SCEEEETTCH
T ss_pred HHhcCCCC-------------HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCeEeCCcCh
Confidence 99999986 789999999999999999999999864 4789987653
No 5
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=100.00 E-value=2.3e-61 Score=447.69 Aligned_cols=214 Identities=28% Similarity=0.436 Sum_probs=195.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||+||..||+++++++||+|++|+|++++|||+||+++|+.++||||+|+.+|.+.|++++|++.+.++|+++
T Consensus 11 ~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~~~i~~i 90 (323)
T 3crm_A 11 MGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADALAAMAKA 90 (323)
T ss_dssp ECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcchh-------------------------------------------------------
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSI------------------------------------------------------- 105 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~------------------------------------------------------- 105 (269)
+++|++||+|||||+|++||++|..
T Consensus 91 ~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~Ri~RALEv~ 170 (323)
T 3crm_A 91 TARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVY 170 (323)
T ss_dssp HHTTCEEEEEESCHHHHHHHHCCC--------------------------------------------------------
T ss_pred HHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHhCHHHHhhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999998841
Q ss_pred -------hhhc-----------------cccceEEEEEeCC-HHHHHHHHHHHHHHHHHcCcHHHHHhhcCCC-CCcccc
Q 044048 106 -------INFR-----------------ANYDCCFIWMDVD-PLVLYKYVGIRVDKMVETGLVDEVRDMFDPN-ADYNRG 159 (269)
Q Consensus 106 -------~~~~-----------------~~~~~~~~~l~~~-~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~~-~~~~~~ 159 (269)
+.+. .+|++++++|+++ |++|++||++||++|+++||++||+.|+..+ .+.+.+
T Consensus 171 ~~tG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~~~~~~~~~~~ 250 (323)
T 3crm_A 171 RLGGVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHARSDLHAGLP 250 (323)
T ss_dssp -----------------------------CSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHTCTTCCTTSS
T ss_pred HHHCCCHHHHHhhccccccccccccccCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcCCCCCCCc
Confidence 0000 1267889999997 9999999999999999999999999999775 455678
Q ss_pred cccccCHHHHHHHHhcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCeeEEeccch
Q 044048 160 IRRSIGAPELHEYLKLESNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRLRNELGWKIHRIDATY 232 (269)
Q Consensus 160 ~~qaIGykE~~~yl~~~~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~~~~~~~~i~~~d~t~ 232 (269)
++|+|||||+++||+|+.+ +++|++.++.+||||||||+||||+.. +++|+|+++
T Consensus 251 ~~~aIGyke~~~yl~g~~~-------------~~eai~~~~~~Tr~yAKRQ~TWfr~~~-----~~~w~~~~~ 305 (323)
T 3crm_A 251 SIRAVGYRQVWDYLDGKLS-------------YAEMTERGIIATRQLAKRQFTWLRSWS-----HLHWMDSLA 305 (323)
T ss_dssp GGGSTTHHHHHHHHTTSSC-------------HHHHHHHHHHHHHHHHHHHHHHHHTCS-----SCEEEETTC
T ss_pred chheecHHHHHHHHcCCCC-------------HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCeEecCCC
Confidence 9999999999999999986 789999999999999999999999863 478888543
No 6
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=100.00 E-value=4.7e-58 Score=428.07 Aligned_cols=211 Identities=33% Similarity=0.570 Sum_probs=194.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||||||||+||..||+.++++|||+||+|||++++|+|+||+.+|+.++||||+|+.++.+.|++.+|.+.+...+.++
T Consensus 13 ~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~~i~~i 92 (340)
T 3d3q_A 13 VGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEKYIKDI 92 (340)
T ss_dssp ECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred ECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccHHHHHHHHcch----h---hh----------------------------------------------
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDS----I---IN---------------------------------------------- 107 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~----~---~~---------------------------------------------- 107 (269)
..+|+.||+||||++|+++++.+. . ..
T Consensus 93 ~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl~r~~~~G~~~l~~~L~~vdP~~a~~I~p~d~~Ri~RA 172 (340)
T 3d3q_A 93 TRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRA 172 (340)
T ss_dssp HHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHCHHHHHHSCTTCHHHHHHH
T ss_pred HhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHhhCcHHHhhcCccCchhhhhH
Confidence 999999999999999999987653 0 00
Q ss_pred -------------h------ccccceEEEEEeCCHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCCCCcccccccccCHHH
Q 044048 108 -------------F------RANYDCCFIWMDVDPLVLYKYVGIRVDKMVETGLVDEVRDMFDPNADYNRGIRRSIGAPE 168 (269)
Q Consensus 108 -------------~------~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gll~Ev~~l~~~~~~~~~~~~qaIGykE 168 (269)
+ ..+|++++|+|++++++|++||++||+.|+++||++||+.|++.+.. +.+++|+|||||
T Consensus 173 LEv~~~tG~~~s~~~~~~~~~~~~~~~~~~L~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~~~~~~-~~~~~~aIGyke 251 (340)
T 3d3q_A 173 IEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGFE-ASQSMQAIGYKE 251 (340)
T ss_dssp HHHHHHHCSCSHHHHHHHHHSBCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCT-TSSGGGSTTTTT
T ss_pred HHHHHHhCCChHHHhhhccCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCC-cchhhhhccHHH
Confidence 0 01378899999999999999999999999999999999999987644 778999999999
Q ss_pred HHHHHhcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCeeEEecc
Q 044048 169 LHEYLKLESNVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKRLRNELGWKIHRIDA 230 (269)
Q Consensus 169 ~~~yl~~~~~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~~~~~~~~~i~~~d~ 230 (269)
+++||+|+.+ +++|++.++.+||||||||+||||+.. +++|+|.
T Consensus 252 ~~~yl~g~~~-------------~~ea~~~~~~~Tr~yAKRQ~TWfr~~~-----~~~w~~~ 295 (340)
T 3d3q_A 252 LVPVIKGNIS-------------MENAVEKLKQHSRQYAKRQLTWFKNKM-----NVHWLNK 295 (340)
T ss_dssp HHHHHHTSSC-------------HHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCEEEET
T ss_pred HHHHHcCCCC-------------HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCeeecC
Confidence 9999999986 789999999999999999999999864 3788875
No 7
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=100.00 E-value=4.2e-38 Score=281.31 Aligned_cols=210 Identities=14% Similarity=0.158 Sum_probs=179.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCC-CCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEA-DYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~-~~~~~~f~~~a~~~i~~ 79 (269)
+|||||||||||..||+.+++++|++|++|+|++++++|++|+.+|+.+++||+++..+|.+ .|+...|.+.+..++ +
T Consensus 7 ~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i-~ 85 (253)
T 2ze6_A 7 YGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLIFEV-D 85 (253)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHHHHH-H
T ss_pred ECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHHHHH-H
Confidence 59999999999999999999999999999999999999999999999999999999999887 899999999999999 8
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCH-HHHHHHHHHHHHHHHHc-----CcHHHHHhhcCCC
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDP-LVLYKYVGIRVDKMVET-----GLVDEVRDMFDPN 153 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~-e~L~~Ri~~Rv~~Ml~~-----Gll~Ev~~l~~~~ 153 (269)
+.++|+.||++||++.|+++++.+. .+...++++++||++|. +++.+|+.+|.++|+.. |+++|+..+++..
T Consensus 86 ~~~~g~~vIl~gg~~~~~~~~~~~~--~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~~~~~~l~e~~~~~~~p 163 (253)
T 2ze6_A 86 WRKSEEGLILEGGSISLLNCMAKSP--FWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLLEELAELWNYP 163 (253)
T ss_dssp TTTTSSEEEEEECCHHHHHHHHHCT--TTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHTST
T ss_pred HHhCCCCeEEeccHHHHHHHHHhcc--cccccCceEEEEecchhHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhcCCc
Confidence 8899999999999999999988741 12234677899999996 99999999999999886 9999999999762
Q ss_pred CCcccccccccCHHHHHHHHhccc-CccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044048 154 ADYNRGIRRSIGAPELHEYLKLES-NVKNETTNNNKDLLLKKAIQEIKDNTCKLVDKQVQKIKR 216 (269)
Q Consensus 154 ~~~~~~~~qaIGykE~~~yl~~~~-~~d~~~~~~~~~~~~~~~ie~ik~~TrqyAkrQ~tW~r~ 216 (269)
....++...+||+|+++|+.... +.+.- ....+.++.++++.|+.+|++|||||.+||.+
T Consensus 164 -~~~~~~~~~~g~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~a~~q~~~~~~ 224 (253)
T 2ze6_A 164 -AARPILEDIDGYRCAIRFARKHDLAISQL--PNIDAGRHVELIEAIANEYLEHALSQERDFPQ 224 (253)
T ss_dssp -THHHHHTTSTTHHHHHHHHHHHTCCGGGG--GGCCTTHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -chHHHHHHHhhHHHHHHHHHhcCCCcchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22244566889999999997431 11110 01223468899999999999999999977764
No 8
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=99.57 E-value=5.5e-17 Score=140.82 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=60.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCc---cccCCCCHhhhcCCCcee----cccCCCCCCCCHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLD---IATNKVTESERQGVPHHL----LGFVDPEADYPVEEFCEH 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~---I~Takpt~~e~~~v~hhl----~~~~~~~~~~~~~~f~~~ 72 (269)
+||||||||+||.+|+++.+ ++||.|++|||++++ |||+||+ +|||| +|+++|.+.|+++.|+..
T Consensus 40 ~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigiid~~~~f~~~~f~~~ 111 (205)
T 2qmh_A 40 TGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGIIDVMNLFGAGAVRED 111 (205)
T ss_dssp ECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEEEHHHHHCTTSBCSC
T ss_pred ECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCCceEEEECCcc------ccccccccceeEEcccccCCHHHHHhc
Confidence 59999999999999999976 999999999999999 9999997 99999 999999999999988654
No 9
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.96 E-value=2e-10 Score=95.53 Aligned_cols=105 Identities=17% Similarity=0.120 Sum_probs=70.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+||||||+|..||+.+|.++|+.|.+-. +..+.+- .+.-+.+....|.....+.+..+
T Consensus 11 ~G~~GsGKst~a~~La~~l~~~~i~~d~~~~--------------~~~g~~~-----~~~~~~~g~~~~~~~~~~~~~~~ 71 (185)
T 3trf_A 11 IGLMGAGKTSVGSQLAKLTKRILYDSDKEIE--------------KRTGADI-----AWIFEMEGEAGFRRREREMIEAL 71 (185)
T ss_dssp ECSTTSSHHHHHHHHHHHHCCCEEEHHHHHH--------------HHHTSCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEChHHHH--------------HHcCCCh-----hhHHHHhCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999731 1112110 00001234567887777888888
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYV 130 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri 130 (269)
.......|.+||+..+-..... .+ +-...++||++|.+++.+|+
T Consensus 72 ~~~~~~vi~~gg~~~~~~~~~~----~l--~~~~~vi~L~~~~e~l~~Rl 115 (185)
T 3trf_A 72 CKLDNIILATGGGVVLDEKNRQ----QI--SETGVVIYLTASIDTQLKRI 115 (185)
T ss_dssp HHSSSCEEECCTTGGGSHHHHH----HH--HHHEEEEEEECCHHHHHHHH
T ss_pred HhcCCcEEecCCceecCHHHHH----HH--HhCCcEEEEECCHHHHHHHH
Confidence 7777777777776432111110 01 11247899999999999999
No 10
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.89 E-value=1.9e-11 Score=104.91 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=70.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHH---------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCE--------- 71 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~--------- 71 (269)
+||+|||||||+..|+..++.. ++...+.+|.+|...|..|++||+++.-...+......|..
T Consensus 14 ~GpsGsGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 14 SGPSGVGKGTVREAVFKDPETS--------FDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp ECCTTSCHHHHHHHHHHSTTCC--------CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ECcCCCCHHHHHHHHHhhCCCc--------EEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 5999999999999999987642 44566789999999999999999765432211000000100
Q ss_pred -HHHHHHHHHHhcCCceEEE---cccHHHHHHHHcchhhhhccccceEEEEEeC-CHHHHHHHHHHHH
Q 044048 72 -HALRAIDKIIENGHLPIIV---GGSNTYIEALVEDSIINFRANYDCCFIWMDV-DPLVLYKYVGIRV 134 (269)
Q Consensus 72 -~a~~~i~~i~~~~~~pIiv---GGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~-~~e~L~~Ri~~Rv 134 (269)
.....++++.+.|+.+|+. .|...+.+. .....++++.+ +.++|.+|+.+|-
T Consensus 86 g~~~~~i~~~l~~g~~vild~~~~g~~~~~~~-----------~~~~~~i~i~~ps~~~l~~Rl~~R~ 142 (208)
T 3tau_A 86 GTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKA-----------MPEGIFIFLTPPDLSELKNRIIGRG 142 (208)
T ss_dssp EEEHHHHHHHHHTTCCEEEECCHHHHHHHHHH-----------CTTSEEEEEECTTTTTSSCC-----
T ss_pred CCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHh-----------CCCeEEEEEeCCCHHHHHHHHHhcC
Confidence 0124567778899988884 333221111 11234555554 4889999998884
No 11
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=5.7e-09 Score=88.37 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=67.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceec-CCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYK-GLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk-~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+||+||||||++..||+.++.++|+.|.+..-. +++| .+. -+.+....|+......+..
T Consensus 31 ~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i-------~~~-------------~~~~~~~~~~~~e~~~l~~ 90 (199)
T 3vaa_A 31 TGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTV-------GEL-------------FTERGEAGFRELERNMLHE 90 (199)
T ss_dssp ECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCH-------HHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcH-------HHH-------------HHhcChHHHHHHHHHHHHH
Confidence 599999999999999999999999999854111 1111 110 0122345677777777777
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHH
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVG 131 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~ 131 (269)
+...+...|.+||.......... .+ .....++||++|.+++.+|+.
T Consensus 91 l~~~~~~vi~~ggg~~~~~~~~~----~l--~~~~~vi~L~~~~e~l~~Rl~ 136 (199)
T 3vaa_A 91 VAEFENVVISTGGGAPCFYDNME----FM--NRTGKTVFLNVHPDVLFRRLR 136 (199)
T ss_dssp HTTCSSEEEECCTTGGGSTTHHH----HH--HHHSEEEEEECCHHHHHHHHH
T ss_pred HhhcCCcEEECCCcEEccHHHHH----HH--HcCCEEEEEECCHHHHHHHHh
Confidence 76555655555654221111110 01 113578999999999999998
No 12
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.67 E-value=3.5e-09 Score=91.29 Aligned_cols=118 Identities=13% Similarity=0.205 Sum_probs=72.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHH--------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEH-------- 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~-------- 72 (269)
+||+|||||||...|++.++..+.. ..+.+|.+|...|..|++||+++.-.....+....|...
T Consensus 25 ~GPSGaGKsTL~~~L~~~~~~~~~~--------~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~Y 96 (197)
T 3ney_A 25 IGASGVGRSHIKNALLSQNPEKFVY--------PVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMF 96 (197)
T ss_dssp ECCTTSSHHHHHHHHHHHCTTTEEC--------CCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ECcCCCCHHHHHHHHHhhCCccEEe--------eecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhceec
Confidence 5999999999999999988743333 344689999999999999997654332211111111111
Q ss_pred --HHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCH----HHHHHHHHHHH
Q 044048 73 --ALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDP----LVLYKYVGIRV 134 (269)
Q Consensus 73 --a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~----e~L~~Ri~~Rv 134 (269)
-...++++.++|+.+|+..-. -.++.+-. .....++|++.||. .+..++|.+|.
T Consensus 97 Gt~~~~v~~~l~~G~~vildid~-qg~~~~~~-------~~~~~~~Ifi~Pps~~~~~e~~~~i~~r~ 156 (197)
T 3ney_A 97 GTKFETVHQIHKQNKIAILDIEP-QTLKIVRT-------AELSPFIVFIAPTDQGTQTEALQQLQKDS 156 (197)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCG-GGHHHHCS-------TTTCEEEEEEEECCBSSCCHHHHHHHHHH
T ss_pred ccchhhHHHHHhcCCeEEEEECH-HHHHHHHh-------cCCCceEEEEeCCCccccchHHHHHHHHH
Confidence 135678888999988887532 22222221 11345667776652 13344566664
No 13
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.66 E-value=2e-07 Score=79.41 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=75.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHH--------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEH-------- 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~-------- 72 (269)
+||+|||||+|...|.+.++.. +..-.+.+|.+|.+.|..|+.||+++ ..+|.++
T Consensus 7 ~GPSG~GK~Tl~~~L~~~~~~~--------~~~svs~TTR~pR~gE~~G~dY~Fvs---------~~eF~~~i~~g~flE 69 (186)
T 1ex7_A 7 SGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVS---------VDEFKSMIKNNEFIE 69 (186)
T ss_dssp ECCTTSSHHHHHHHHHHHCTTT--------EEECCCEECSCCCTTCCBTTTBEECC---------HHHHHHHHHTTCEEE
T ss_pred ECCCCCCHHHHHHHHHHhCCCC--------eEEEEEEeccCCCCCCcCCceeEeec---------HHHHHHHHHcCCEEE
Confidence 5999999999999999887542 22345688999999999999999875 3344333
Q ss_pred -----------HHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEE-eCCHHHHHHHHHHH
Q 044048 73 -----------ALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWM-DVDPLVLYKYVGIR 133 (269)
Q Consensus 73 -----------a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l-~~~~e~L~~Ri~~R 133 (269)
-.+.+++.++.|+.+|+.+ ..-.++.+-. ....++.++++ -++.++|.+||..|
T Consensus 70 ~~~~~g~~YGt~~~~v~~~l~~g~~vil~i-d~~g~~~~k~------~~~~~~~~Ifi~pps~e~L~~RL~~R 135 (186)
T 1ex7_A 70 WAQFSGNYYGSTVASVKQVSKSGKTCILDI-DMQGVKSVKA------IPELNARFLFIAPPSVEDLKKRLEGR 135 (186)
T ss_dssp EEEETTEEEEEEHHHHHHHHHHTSEEEEEC-CHHHHHHHHT------CGGGCCEEEEEECSCHHHHHHHHHHH
T ss_pred EEEEcCceeeeecceeeehhhCCCEEEecC-CHHHHHHHHH------hcccCceEEEEeCCCHHHHHHHHHhc
Confidence 2345666778888766654 3333334332 11234555555 45679999999998
No 14
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.62 E-value=1.6e-07 Score=79.15 Aligned_cols=106 Identities=18% Similarity=0.224 Sum_probs=63.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhh-hcCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESE-RQGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e-~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+||+||||||+|..|++.+|..+|+.|.+. ... .... ..+. .|..... ....+.+.+
T Consensus 24 ~G~~GsGKSTla~~L~~~lg~~~i~~d~~~--~~~-------~~~~~~~g~------------~~~~~~~-~~~~~~l~~ 81 (202)
T 3t61_A 24 MGVSGSGKSSVGEAIAEACGYPFIEGDALH--PPE-------NIRKMSEGI------------PLTDDDR-WPWLAAIGE 81 (202)
T ss_dssp ECSTTSCHHHHHHHHHHHHTCCEEEGGGGC--CHH-------HHHHHHHTC------------CCCHHHH-HHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCEEEeCCcCc--chh-------hHHHHhcCC------------CCCchhh-HHHHHHHHH
Confidence 599999999999999999999999999863 100 0000 0111 1222211 112234444
Q ss_pred HHhcCCceEEEccc--HHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 80 IIENGHLPIIVGGS--NTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 80 i~~~~~~pIivGGt--~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
....|...|+.++. ..+.+.+.. ....+..+++|++|.+++.+|+.+|-
T Consensus 82 ~~~~~~~vivd~~~~~~~~~~~l~~------~~~~~~~vi~l~~~~e~~~~Rl~~R~ 132 (202)
T 3t61_A 82 RLASREPVVVSCSALKRSYRDKLRE------SAPGGLAFVFLHGSESVLAERMHHRT 132 (202)
T ss_dssp HHTSSSCCEEECCCCSHHHHHHHHH------TSTTCCEEEEEECCHHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCCCCHHHHHHHHH------hcCCCeEEEEEeCCHHHHHHHHHHhh
Confidence 44667655555443 122222221 01234688999999999999999985
No 15
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.57 E-value=3.5e-07 Score=76.64 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=68.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH-------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA------- 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a------- 73 (269)
+||+|||||||+..|+..++ .++-.....|.+|...+..++.+++.+ ...|....
T Consensus 13 ~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFID---------ETRFQAMVKEGAFLE 74 (205)
T ss_dssp ECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECC---------HHHHHHHHHHTCEEE
T ss_pred ECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEecc---------HHHHHHHHhcCcEEe
Confidence 59999999999999998864 344555667777777777778777553 22333322
Q ss_pred ------------HHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEe-CCHHHHHHHHHHH
Q 044048 74 ------------LRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMD-VDPLVLYKYVGIR 133 (269)
Q Consensus 74 ------------~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~-~~~e~L~~Ri~~R 133 (269)
.+.+.++.+.|+.+|+.+ .-..+..+.. .......+++. ++.+++.+|+.+|
T Consensus 75 ~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~-~~~~~~~~~~-------~~~~~~~v~~~~~~~e~l~~Rl~~R 139 (205)
T 3tr0_A 75 HATIYERHYGTEKDWVLRQLKAGRDVLLEI-DWQGARQIRE-------LFPPALSIFILPPSIEALRERLIKR 139 (205)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEEEC-CHHHHHHHHH-------HCTTCEEEEEECSCHHHHHHHHHTC
T ss_pred eeeeecccccchHHHHHHHHHcCCeEEEEE-CHHHHHHHHH-------hCCCcEEEEEECcCHHHHHHHHHHh
Confidence 145667778888666664 2222211211 01123445554 4689999999888
No 16
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.52 E-value=3.9e-08 Score=81.59 Aligned_cols=107 Identities=11% Similarity=0.164 Sum_probs=64.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|++||||||+|..||+.+|.++|++|.+. +.+ .+.+ ..+. ++ ......|.....+.+..+
T Consensus 8 ~G~~GsGKsT~a~~La~~lg~~~id~D~~~--~~~---~g~~-~~~~----------~~---~~g~~~~~~~~~~~~~~~ 68 (184)
T 2iyv_A 8 VGLPGSGKSTIGRRLAKALGVGLLDTDVAI--EQR---TGRS-IADI----------FA---TDGEQEFRRIEEDVVRAA 68 (184)
T ss_dssp ECSTTSSHHHHHHHHHHHHTCCEEEHHHHH--HHH---HSSC-HHHH----------HH---HHCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEeCchHH--HHH---cCCC-HHHH----------HH---HhChHHHHHHHHHHHHHH
Confidence 599999999999999999999999999852 321 0111 1110 00 012244655555666776
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.......|.+|| +. +++....... + ...++||++|.+++.+|+.+|
T Consensus 69 ~~~~~~vi~~g~-~~----v~~~~~~~~l-~-~~~vV~L~~~~e~~~~Rl~~r 114 (184)
T 2iyv_A 69 LADHDGVLSLGG-GA----VTSPGVRAAL-A-GHTVVYLEISAAEGVRRTGGN 114 (184)
T ss_dssp HHHCCSEEECCT-TG----GGSHHHHHHH-T-TSCEEEEECCHHHHHHHTTCC
T ss_pred HhcCCeEEecCC-cE----EcCHHHHHHH-c-CCeEEEEeCCHHHHHHHHhCC
Confidence 665554444555 32 2221111110 1 236899999999999998766
No 17
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.52 E-value=1.7e-07 Score=76.66 Aligned_cols=105 Identities=16% Similarity=0.198 Sum_probs=65.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|+.||||||+|..||+.+|.++|++|.+- +.. .++ +..+.. ..+....|...-.+.+..+
T Consensus 13 ~G~~GsGKSTva~~La~~lg~~~id~D~~~--~~~---~g~-~~~~~~-------------~~~g~~~~~~~~~~~l~~~ 73 (168)
T 1zuh_A 13 IGFMGSGKSSLAQELGLALKLEVLDTDMII--SER---VGL-SVREIF-------------EELGEDNFRMFEKNLIDEL 73 (168)
T ss_dssp ESCTTSSHHHHHHHHHHHHTCCEEEHHHHH--HHH---HTS-CHHHHH-------------HHTCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEChHHH--HHH---hCC-CHHHHH-------------HHhCHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999853 221 011 111110 0133445655555666776
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.+.+...|+++|.|.- +. .+ +. ....++||++|.+++.+|+.+|
T Consensus 74 ~~~~~~~Vi~~g~g~~----~~-~~--l~--~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 74 KTLKTPHVISTGGGIV----MH-EN--LK--GLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp HTCSSCCEEECCGGGG----GC-GG--GT--TSEEEEEEECCHHHHHHHHCC-
T ss_pred HhcCCCEEEECCCCEe----ch-hH--Hh--cCCEEEEEECCHHHHHHHHhcc
Confidence 5544431555444432 21 11 21 1347899999999999999877
No 18
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.52 E-value=1.5e-07 Score=77.05 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=66.6
Q ss_pred CCCCcCchhHHHHHHHH-HcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCC---HHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI-HFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYP---VEEFCEHALRA 76 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~-~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~---~~~f~~~a~~~ 76 (269)
+||+||||||+|..|++ .++..+|+.|.+. ..+. +.+. . .. ..|+ ...+.......
T Consensus 8 ~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r--~~~~---~~~~-~--------~~------~~~~~~~~~~~~~~~~~~ 67 (181)
T 1ly1_A 8 IGCPGSGKSTWAREFIAKNPGFYNINRDDYR--QSIM---AHEE-R--------DE------YKYTKKKEGIVTGMQFDT 67 (181)
T ss_dssp ECCTTSSHHHHHHHHHHHSTTEEEECHHHHH--HHHT---TSCC-G--------GG------CCCCHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHhhcCCcEEecHHHHH--HHhh---CCCc-c--------ch------hhhchhhhhHHHHHHHHH
Confidence 49999999999999999 6888999988643 1110 0000 0 00 1122 12233444556
Q ss_pred HHHHH---hcCCceEEEcccHH---HHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 77 IDKII---ENGHLPIIVGGSNT---YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 77 i~~i~---~~~~~pIivGGt~~---Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
+.... +.|+ .||+.|+.. |.+.+..- . -...+++.++||++|.+++.+|+..|-
T Consensus 68 ~~~~l~~~~~g~-~vi~d~~~~~~~~~~~l~~~-~--~~~~~~~~~i~l~~~~~~~~~R~~~R~ 127 (181)
T 1ly1_A 68 AKSILYGGDSVK-GVIISDTNLNPERRLAWETF-A--KEYGWKVEHKVFDVPWTELVKRNSKRG 127 (181)
T ss_dssp HHHHHTSCSSCC-EEEECSCCCSHHHHHHHHHH-H--HHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred HHHHHhhccCCC-eEEEeCCCCCHHHHHHHHHH-H--HHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence 66666 5565 666666643 33333210 0 011245678999999999999998885
No 19
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.52 E-value=3.8e-07 Score=74.86 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=62.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee--eCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHH---HHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI--NSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFC---EHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI--s~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~---~~a~~ 75 (269)
+||+||||||+|..||++++...+ +.|.+.- .+. .++ ..+..+ +++.+....+....|. .....
T Consensus 9 ~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~--~~~---~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 77 (178)
T 1qhx_A 9 NGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE--AMP---LKM-QSAEGG-----IEFDADGGVSIGPEFRALEGAWAE 77 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH--HSC---GGG-GTSTTS-----EEECTTSCEEECHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh--hcc---hhh-ccchhh-----ccccCCCccccchhHHHHHHHHHH
Confidence 499999999999999999987655 4665421 110 000 000111 1111111112223333 22333
Q ss_pred HHHHHHhcCCceEEEcccHH---H-HHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 76 AIDKIIENGHLPIIVGGSNT---Y-IEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~---Y-~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.+..+.+.|... |+.++.+ . .+.+.. .+ ....+.++||++|.+++.+|+.+|-
T Consensus 78 ~~~~~~~~g~~v-i~~~~~~~~~~~~~~~~~----~~-~~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 78 GVVAMARAGARI-IIDDVFLGGAAAQERWRS----FV-GDLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHHHHHHTTCEE-EEEECCTTTHHHHHHHHH----HH-TTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred HHHHHHhcCCeE-EEEeccccChHHHHHHHH----Hh-cCCcEEEEEEECCHHHHHHHHHhhC
Confidence 456666667644 4444421 1 111111 11 1245678899999999999998873
No 20
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.51 E-value=2.2e-07 Score=82.54 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=69.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+||||||++..||+.+|..++..|.+- +.. ++..+..+.. +.+....|+....+.+.++
T Consensus 54 ~G~~GsGKSTl~~~La~~lg~~~~d~d~~~--~~~---~~g~~i~~i~-------------~~~ge~~fr~~e~~~l~~l 115 (250)
T 3nwj_A 54 VGMMGSGKTTVGKIMARSLGYTFFDCDTLI--EQA---MKGTSVAEIF-------------EHFGESVFREKETEALKKL 115 (250)
T ss_dssp ECSTTSCHHHHHHHHHHHHTCEEEEHHHHH--HHH---STTSCHHHHH-------------HHHCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCcEEeCcHHH--HHH---hcCccHHHHH-------------HHhCcHHHHHHHHHHHHHH
Confidence 599999999999999999999999998753 211 0011122211 1245667877777788888
Q ss_pred Hhc-CCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHH---HHHHHHHc
Q 044048 81 IEN-GHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGI---RVDKMVET 140 (269)
Q Consensus 81 ~~~-~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~---Rv~~Ml~~ 140 (269)
... ....|.+||. . ++...+..+.. ...++||++|.+++.+|+.+ +.+.++..
T Consensus 116 ~~~~~~~Via~GgG-~----v~~~~~~~~l~--~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~ 172 (250)
T 3nwj_A 116 SLMYHQVVVSTGGG-A----VIRPINWKYMH--KGISIWLDVPLEALAHRIAAVGTGSRPLLHD 172 (250)
T ss_dssp HHHCSSEEEECCGG-G----GGSHHHHHHHT--TSEEEEEECCHHHHHHHHHC-----------
T ss_pred HhhcCCcEEecCCC-e----ecCHHHHHHHh--CCcEEEEECCHHHHHHHHhhcCCCCCCcccC
Confidence 766 4555556653 2 12111111111 24789999999999999975 33444443
No 21
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.50 E-value=6.6e-08 Score=78.98 Aligned_cols=106 Identities=14% Similarity=0.195 Sum_probs=60.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|++||||||+|..||+.+|.++|+.|.+. +.. .+.+ ..+. + + .+....|......++..+
T Consensus 8 ~G~~GsGKsT~a~~La~~lg~~~id~d~~~--~~~---~g~~-~~~~-------~---~---~~~~~~~~~~~~~~~~~l 68 (173)
T 1e6c_A 8 VGARGCGMTTVGRELARALGYEFVDTDIFM--QHT---SGMT-VADV-------V---A---AEGWPGFRRRESEALQAV 68 (173)
T ss_dssp ESCTTSSHHHHHHHHHHHHTCEEEEHHHHH--HHH---HCSC-HHHH-------H---H---HHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEcccHHH--HHH---hCCC-HHHH-------H---H---HcCHHHHHHHHHHHHHHh
Confidence 499999999999999999999999999753 221 1111 1110 0 0 011223444434455555
Q ss_pred HhcCCceEEE-cccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHH--HH
Q 044048 81 IENGHLPIIV-GGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVG--IR 133 (269)
Q Consensus 81 ~~~~~~pIiv-GGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~--~R 133 (269)
. .+. .|++ ||.......... .+. . ...++||++|.+++.+|+. .|
T Consensus 69 ~-~~~-~vi~~g~~~~~~~~~~~----~l~-~-~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 69 A-TPN-RVVATGGGMVLLEQNRQ----FMR-A-HGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp C-CSS-EEEECCTTGGGSHHHHH----HHH-H-HSEEEEEECCHHHHHHHHHHHHC
T ss_pred h-cCC-eEEECCCcEEeCHHHHH----HHH-c-CCeEEEEECCHHHHHHHHhhccC
Confidence 3 333 4444 543221111111 111 1 2378999999999999998 66
No 22
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.49 E-value=9.8e-07 Score=74.75 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=71.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCC-----CC------CCHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPE-----AD------YPVEEF 69 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~-----~~------~~~~~f 69 (269)
+||+|||||||+..|++.++.. ++......|-+|...|..|..+|+++.-... .. +.-. +
T Consensus 18 ~G~sGsGKsTl~~~L~~~~~~~--------~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 88 (204)
T 2qor_A 18 CGPSGVGKGTLIKKVLSEFPSR--------FRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANN-F 88 (204)
T ss_dssp ECCTTSCHHHHHHHHHHHCTTT--------EEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTE-E
T ss_pred ECCCCCCHHHHHHHHHHhCccc--------eeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCC-e
Confidence 5999999999999999998631 2233467888888888888887765321000 00 0000 0
Q ss_pred HHHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEe-CCHHHHHHHHHHHH
Q 044048 70 CEHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMD-VDPLVLYKYVGIRV 134 (269)
Q Consensus 70 ~~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~-~~~e~L~~Ri~~Rv 134 (269)
.......++.+.+.|+..|+.+-. .-...+..- + ...+..++||+ ++.++|.+|+.+|-
T Consensus 89 ~~~~~~~i~~~l~~g~~vi~d~~~-~~~~~l~~~----~-~~~~~~~i~l~~~s~e~l~~Rl~~R~ 148 (204)
T 2qor_A 89 YGTLKSEYDLAVGEGKICLFEMNI-NGVKQLKES----K-HIQDGIYIFVKPPSIDILLGRLKNRN 148 (204)
T ss_dssp EEEEHHHHHHHHHTTCEEEEECCH-HHHHHHHHC----S-SCSCCEEEEEECSCHHHHHHHHHTCT
T ss_pred ecCCHHHHHHHHHcCCeEEEEECH-HHHHHHHHh----c-CCCCeEEEEEcCCCHHHHHHHHHHcC
Confidence 000113456666788876665422 112222210 0 00145889998 89999999997773
No 23
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.49 E-value=4.5e-07 Score=75.33 Aligned_cols=117 Identities=10% Similarity=0.125 Sum_probs=64.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+||||||+|..||+.++..+|++|.+- +... -.+.+..... ...+. + .+.+..........+.+...
T Consensus 15 ~G~~GsGKsT~~~~La~~l~~~~i~~d~~~--~~~~-~~~~~~~~~i---~~~~~---~-g~~~~~~~~~~~~~~~i~~~ 84 (196)
T 2c95_A 15 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLL--RSEV-SSGSARGKKL---SEIME---K-GQLVPLETVLDMLRDAMVAK 84 (196)
T ss_dssp EECTTSSHHHHHHHHHHHHCCEEEEHHHHH--HHHH-HTTCHHHHHH---HHHHH---T-TCCCCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEcHHHHH--HHHH-HcCChHHHHH---HHHHH---c-CCcCCHHHHHHHHHHHHHhc
Confidence 499999999999999999999999998743 3210 0000000000 00110 1 11122222333344455555
Q ss_pred HhcCCceEEEcccHH---HHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNT---YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~---Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.+.|+..|+.| ... .++.+.. .+ .....+++|++|.+++.+|+..|-
T Consensus 85 ~~~~~~vi~d~-~~~~~~~~~~~~~----~~--~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 85 VNTSKGFLIDG-YPREVQQGEEFER----RI--GQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp TTTCSCEEEES-CCCSHHHHHHHHH----HT--CCCSEEEEEECCHHHHHHHHHHHH
T ss_pred cccCCcEEEeC-CCCCHHHHHHHHH----hc--CCCCEEEEEECCHHHHHHHHHccC
Confidence 55676555544 321 2222211 01 123378999999999999998884
No 24
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.48 E-value=4.9e-07 Score=75.98 Aligned_cols=120 Identities=11% Similarity=0.110 Sum_probs=64.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|++||||||+|..||+.+|..+|++|. +++...--.+.+..+... . ++. +....+. ........+.+...
T Consensus 21 ~G~~GsGKsT~~~~L~~~~g~~~i~~d~--~~~~~~~~~~~~~~~~i~---~-~~~--~g~~~~~-~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 21 LGGPGAGKGTQCEKLVKDYSFVHLSAGD--LLRAEQGRAGSQYGELIK---N-CIK--EGQIVPQ-EITLALLRNAISDN 91 (203)
T ss_dssp ECSTTSSHHHHHHHHHHHSSCEEEEHHH--HHHHHHHSTTCSCHHHHH---H-HHH--TTCCCCH-HHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHcCceEEeHHH--HHHHHHhccCCHHHHHHH---H-HHH--cCCcCCH-HHHHHHHHHHHHhh
Confidence 4999999999999999999999999996 333210000111111111 0 110 0000111 11122334445555
Q ss_pred HhcCCceEEEcccHHHHH-H-HHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIE-A-LVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~-~-ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.+.|+-.+++.|...-+. + ++.. .+ .. ...+++|++|.+++.+|+.+|-
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~---~~-~~-~~~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFER---DI-VE-SKFILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHH---HT-CC-CSEEEEEECCHHHHHHHHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHH---hc-CC-CCEEEEEECCHHHHHHHHHhcc
Confidence 667754555555421111 1 1110 01 11 2378999999999999999884
No 25
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.48 E-value=1.7e-07 Score=88.71 Aligned_cols=93 Identities=11% Similarity=0.131 Sum_probs=63.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+||||||+|..|++.++..+|+.|.+.. |.. +...+...
T Consensus 264 ~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~-------------------------------------~~~-~~~~~~~~ 305 (416)
T 3zvl_A 264 VGFPGAGKSTFIQEHLVSAGYVHVNRDTLGS-------------------------------------WQR-CVSSCQAA 305 (416)
T ss_dssp ESCTTSSHHHHHHHHTGGGTCEECCGGGSCS-------------------------------------HHH-HHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCcEEEccchHHH-------------------------------------HHH-HHHHHHHH
Confidence 5999999999999999999999999998621 222 23334444
Q ss_pred HhcCCceEEEcccHHH---HHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTY---IEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVD 135 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y---~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~ 135 (269)
...|+ +||+.+|+.. .+.+..- .-...+.+.++||+++.+++.+|+..|..
T Consensus 306 l~~g~-~vIiD~~~~~~~~r~~~~~~---~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 306 LRQGK-RVVIDNTNPDVPSRARYIQC---AKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp HHTTC-CEEEESCCCSHHHHHHHHHH---HHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred HhcCC-cEEEeCCCCCHHHHHHHHHH---HHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 46666 4556666432 2222210 00123567899999999999999999974
No 26
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.48 E-value=5.3e-07 Score=74.03 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=62.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhh-hcCCCceecccCCCCCCCCHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESE-RQGVPHHLLGFVDPEADYPVEEFCEHALRAIDK 79 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e-~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~ 79 (269)
+||+||||||++..|+..+|..+|+.|.+. +... ... ..+... . +.....+.......+..
T Consensus 14 ~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~--~~~~-------~~~~~~g~~~--------~-~~~~~~~~~~~~~~~~~ 75 (175)
T 1knq_A 14 MGVSGSGKSAVASEVAHQLHAAFLDGDFLH--PRRN-------IEKMASGEPL--------N-DDDRKPWLQALNDAAFA 75 (175)
T ss_dssp ECSTTSCHHHHHHHHHHHHTCEEEEGGGGC--CHHH-------HHHHHTTCCC--------C-HHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHhhCcEEEeCcccc--chHH-------HHHhhcCcCC--------C-ccccccHHHHHHHHHHH
Confidence 599999999999999999999999998763 1100 000 011100 0 00111222333344555
Q ss_pred HHhcCCceEEEcccHHHHHHHHcchhhhhccc-cceEEEEEeCCHHHHHHHHHHHH
Q 044048 80 IIENGHLPIIVGGSNTYIEALVEDSIINFRAN-YDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 80 i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~-~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
+...+...|+..|. ++ ..... .+... .++.++||++|.+++.+|+.+|-
T Consensus 76 ~~~~~~~~vi~~~~-~~-~~~~~----~l~~~~~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 76 MQRTNKVSLIVCSA-LK-KHYRD----LLREGNPNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp HHHHCSEEEEECCC-CS-HHHHH----HHHTTCTTEEEEEEECCHHHHHHHHHTST
T ss_pred HHhcCCcEEEEeCc-hH-HHHHH----HHHhcCCCEEEEEEECCHHHHHHHHHhcc
Confidence 55556645554332 21 11110 11111 25589999999999999998873
No 27
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.44 E-value=4.1e-07 Score=75.35 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=63.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHH---HHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEE---FCEHALRAI 77 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~---f~~~a~~~i 77 (269)
+|++||||||++..|++.++.++|+.|.+. ..+ ... ++. + +..|...- ........+
T Consensus 11 ~G~~GsGKST~~~~L~~~l~~~~i~~D~~~--~~~-----------~~~-----~~~-~-~~~~~~~~~~~~~~~~~~~~ 70 (193)
T 2rhm_A 11 TGHPATGKTTLSQALATGLRLPLLSKDAFK--EVM-----------FDG-----LGW-S-DREWSRRVGATAIMMLYHTA 70 (193)
T ss_dssp EESTTSSHHHHHHHHHHHHTCCEEEHHHHH--HHH-----------HHH-----HCC-C-SHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEecHHHHH--HHH-----------HHh-----cCc-c-chHHHHHhhHHHHHHHHHHH
Confidence 499999999999999999999999988753 111 000 000 0 00110000 011122334
Q ss_pred HHHHhcCCceEEEcccHHHH---HHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHH
Q 044048 78 DKIIENGHLPIIVGGSNTYI---EALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVD 135 (269)
Q Consensus 78 ~~i~~~~~~pIivGGt~~Y~---~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~ 135 (269)
..+.+.|... |+.|+..+- +.+. .... .......++||++|.+++.+|+.+|-.
T Consensus 71 ~~~l~~g~~v-i~d~~~~~~~~~~~~~-~l~~--~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 71 ATILQSGQSL-IMESNFRVDLDTERMQ-NLHT--IAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp HHHHHTTCCE-EEEECCCHHHHHHHHH-HHHH--HSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHhCCCeE-EEecCCCCHHHHHHHH-HHHH--hcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 4555677744 554554321 1120 0000 112456889999999999999999863
No 28
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.40 E-value=1.4e-07 Score=76.79 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=61.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
.|++||||||+|..|++.++.++|++|.+- +.. .+ .+..+. +. .+....|......++..+
T Consensus 6 ~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~--~~~-~g---~~~~~~-------~~------~~~~~~~~~~~~~~l~~l 66 (168)
T 2pt5_A 6 IGFMCSGKSTVGSLLSRSLNIPFYDVDEEV--QKR-EG---LSIPQI-------FE------KKGEAYFRKLEFEVLKDL 66 (168)
T ss_dssp ESCTTSCHHHHHHHHHHHHTCCEEEHHHHH--HHH-HT---SCHHHH-------HH------HSCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEECcHHH--HHH-cC---CCHHHH-------HH------HhChHHHHHHHHHHHHHH
Confidence 499999999999999999999999999753 221 01 111111 00 123344544434455555
Q ss_pred HhcCCceEEEcccHHH-HHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTY-IEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y-~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.+.+ ..|++.|.+.. ...... .+. . ...++||++|.+++.+|+.+|
T Consensus 67 ~~~~-~~Vi~~g~~~~~~~~~~~----~l~-~-~~~~i~l~~~~e~~~~R~~~r 113 (168)
T 2pt5_A 67 SEKE-NVVISTGGGLGANEEALN----FMK-S-RGTTVFIDIPFEVFLERCKDS 113 (168)
T ss_dssp TTSS-SEEEECCHHHHTCHHHHH----HHH-T-TSEEEEEECCHHHHHHHCBCT
T ss_pred hccC-CeEEECCCCEeCCHHHHH----HHH-c-CCEEEEEECCHHHHHHHHhCC
Confidence 4333 35555332221 111111 111 1 237899999999999998776
No 29
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.37 E-value=1.9e-06 Score=75.78 Aligned_cols=120 Identities=17% Similarity=0.129 Sum_probs=68.2
Q ss_pred CCCCcCchhHHHHHHHHHcC--CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCC-CCCCHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS--GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPE-ADYPVEEFCEHALRAI 77 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~--~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~-~~~~~~~f~~~a~~~i 77 (269)
+||+||||||+|..|++.++ ..+++.|.+. +.+ |...++. .-.... ..+....+...+...+
T Consensus 38 ~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r--~~~------~~~~~i~-------~~~g~~~~~~~~~~~~~~~~~~~ 102 (253)
T 2p5t_B 38 GGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR--SQH------PHYLELQ-------QEYGKDSVEYTKDFAGKMVESLV 102 (253)
T ss_dssp ESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG--TTS------TTHHHHH-------TTCSSTTHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH--Hhc------hhHHHHH-------HHcCchHHHHhhHHHHHHHHHHH
Confidence 59999999999999999997 4566777643 222 1111110 000000 0111111334445566
Q ss_pred HHHHhcCCceEEEcccHH--HHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHHHH
Q 044048 78 DKIIENGHLPIIVGGSNT--YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDKMV 138 (269)
Q Consensus 78 ~~i~~~~~~pIivGGt~~--Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml 138 (269)
+.+.+.|...|+.|+-+. +...+..-. ....+.+.++++++|.+++.+|+..|...+.
T Consensus 103 ~~~~~~g~~vVid~~~~~~~~~~~~~~~l---~~~g~~v~lv~l~~~~e~~~~R~~~R~~~~~ 162 (253)
T 2p5t_B 103 TKLSSLGYNLLIEGTLRTVDVPKKTAQLL---KNKGYEVQLALIATKPELSYLSTLIRYEELY 162 (253)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHH---HHTTCEEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCEEEeCCCCCHHHHHHHHHHH---HHCCCcEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 666677765566554332 222222100 0123566778899999999999999986654
No 30
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.37 E-value=1.2e-06 Score=77.43 Aligned_cols=104 Identities=24% Similarity=0.228 Sum_probs=65.2
Q ss_pred CCCCcCchhHHHHHHHHH---cCCeee--eCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH---FSGEAI--NSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~---~~~eiI--s~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
+|++||||||+|..|++. +|..+| +.|.+. ..+ .+ .++ .....|......
T Consensus 10 ~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~--~~l------------~~--------~~~---~~e~~~~~~~~~ 64 (260)
T 3a4m_A 10 TGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR--ESF------------PV--------WKE---KYEEFIKKSTYR 64 (260)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH--TTS------------SS--------CCG---GGHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH--HHH------------hh--------hhH---HHHHHHHHHHHH
Confidence 499999999999999998 677777 666542 111 00 111 123344444455
Q ss_pred HHHHHHhcCCceEEEcccHHHH---HHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 76 AIDKIIENGHLPIIVGGSNTYI---EALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~Y~---~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.+....+. ..||+.|+.+|- +.+.. . .-....+.+++||++|.+++.+|+.+|-
T Consensus 65 ~i~~~l~~--~~vIiD~~~~~~~~~~~l~~-~--a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 65 LIDSALKN--YWVIVDDTNYYNSMRRDLIN-I--AKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp HHHHHHTT--SEEEECSCCCSHHHHHHHHH-H--HHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred HHHHHhhC--CEEEEeCCcccHHHHHHHHH-H--HHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 66666554 567777775432 11211 0 0012345789999999999999999884
No 31
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.36 E-value=5.4e-06 Score=68.91 Aligned_cols=104 Identities=15% Similarity=0.206 Sum_probs=65.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHH--------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEH-------- 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~-------- 72 (269)
+||+|||||||+..|+..++. ..+..+..+|.+|...|..+++||+++.- .|..+
T Consensus 11 ~GpsGsGKSTL~~~L~~~~~~--------~~~~~i~~ttr~~~~ge~~g~~~~~~~~~---------~~~~~~~~~~~l~ 73 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLITKHPD--------RFAYPIPHTTRPPKKDEENGKNYYFVSHD---------QMMQDISNNEYLE 73 (180)
T ss_dssp ECCTTSSHHHHHHHHHHHCTT--------TEECCCCEECSCC---CCBTTTBEECCHH---------HHHHHHHTTCEEE
T ss_pred ECCCCCCHHHHHHHHHhhCCc--------cEEEeeeccCCCCCccccCCCeeEEeCHH---------HHHHHHHcCCceE
Confidence 599999999999999998652 12234567899999989999999976532 22221
Q ss_pred -----------HHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCC-HHHHHHH
Q 044048 73 -----------ALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVD-PLVLYKY 129 (269)
Q Consensus 73 -----------a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~-~e~L~~R 129 (269)
....++++.+.|+.+|+..-. -.+..+.. .......+++.+| .+.|.+|
T Consensus 74 ~~~~~~n~yg~~~~~i~~~l~~g~~vil~id~-~g~~~~~~-------~~~~~~~ifi~~p~~~~l~~R 134 (180)
T 1kgd_A 74 YGSHEDAMYGTKLETIRKIHEQGLIAILDVEP-QALKVLRT-------AEFAPFVVFIAAPTITPGLNE 134 (180)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEEECCG-GGHHHHSS-------TTTCEEEEEEECCSCCTTSCC
T ss_pred EEEEcCccccccHHHHHHHHHCCCeEEEEECH-HHHHHHHH-------hCCCcEEEEEECCCHHHHHhh
Confidence 134567777899988887432 22222221 1124577888865 6666665
No 32
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.35 E-value=1.5e-06 Score=78.33 Aligned_cols=119 Identities=15% Similarity=0.071 Sum_probs=65.1
Q ss_pred CCCCcCchhHHHHHHHHHc--CCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF--SGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAID 78 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~--~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~ 78 (269)
+||+||||||++..|++.+ +..+||+|.+.... |...++.. . ++ .....+.-..|...+...++
T Consensus 39 ~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~--------~~~~~~~~---~-~~--~~a~~~~~~~~~~~~~~~v~ 104 (287)
T 1gvn_B 39 GGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH--------PNFDELVK---L-YE--KDVVKHVTPYSNRMTEAIIS 104 (287)
T ss_dssp ECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS--------TTHHHHHH---H-HG--GGCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhc--------hhhHHHHH---H-cc--chhhhhhhHHHHHHHHHHHH
Confidence 5999999999999999998 67889988754222 11111100 0 00 00001112233444566777
Q ss_pred HHHhcCCceEEEccc-H-HHHHHHHcchhhhh-ccccceEEEEEeCCHHHHHHHHHHHHHHH
Q 044048 79 KIIENGHLPIIVGGS-N-TYIEALVEDSIINF-RANYDCCFIWMDVDPLVLYKYVGIRVDKM 137 (269)
Q Consensus 79 ~i~~~~~~pIivGGt-~-~Y~~~ll~g~~~~~-~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~M 137 (269)
.+.+.|+..|+.|+- + .+...+.. .+ ...+...++++.+|++....|+.+|+...
T Consensus 105 ~~l~~g~~vIld~~~~~~~~~~~~~~----~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 105 RLSDQGYNLVIEGTGRTTDVPIQTAT----MLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp HHHHHTCCEEECCCCCCSHHHHHHHH----HHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCeEEEECCCCCHHHHHHHHH----HHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 777788755554322 1 12222221 11 12356667899999999944444444333
No 33
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.33 E-value=9e-07 Score=72.80 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=55.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|+.||||||+|..||+.++..+|. |.-.+ +.. ..+. ++...-++.+. ..+.....+.+..+
T Consensus 11 ~G~~GsGKST~a~~La~~l~~~~i~-d~~~~--g~~-------i~~~--~~~g~~~~~~~------~~~~~~~~~~i~~~ 72 (183)
T 2vli_A 11 NGPFGVGKTHTAHTLHERLPGSFVF-EPEEM--GQA-------LRKL--TPGFSGDPQEH------PMWIPLMLDALQYA 72 (183)
T ss_dssp ECCC----CHHHHHHHHHSTTCEEC-CTHHH--HHH-------HHHT--STTCCSCGGGS------TTHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCCEEE-chhhh--HHH-------HHHh--Cccccchhhhh------HHHHHHHHHHHHHH
Confidence 4999999999999999999998872 31000 000 0000 00000001110 11223334455555
Q ss_pred HhcCCceEEEcccHH---HHHHHHcchhhhhc-cccceEEEEEeCCHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNT---YIEALVEDSIINFR-ANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 81 ~~~~~~pIivGGt~~---Y~~~ll~g~~~~~~-~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.+.+...|++.++.. |...+.. .+. ....+..++|++|.+++.+|+..|-
T Consensus 73 l~~~g~~vi~d~~~~~~~~~~~~~~----~l~~~~~~~~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 73 SREAAGPLIVPVSISDTARHRRLMS----GLKDRGLSVHHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp HHHCSSCEEEEECCCCHHHHHHHHH----HHHHTTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred HHhCCCcEEEeeeccCHHHHHHHHH----HHHhcCCceEEEEEeCCHHHHHHHHHhcc
Confidence 565333555666642 2222221 011 1233466999999999999999885
No 34
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.32 E-value=1.4e-06 Score=72.49 Aligned_cols=116 Identities=10% Similarity=0.061 Sum_probs=62.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+||||||+|..||+.++..+|++|.+- +...- .+.|.-... ...+ + ..+............+.+...
T Consensus 18 ~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~--~~~~~-~~~~~~~~i---~~~~-~---~g~~~~~~~~~~~~~~~i~~~ 87 (199)
T 2bwj_A 18 IGGPGSGKGTQCEKLVEKYGFTHLSTGELL--REELA-SESERSKLI---RDIM-E---RGDLVPSGIVLELLKEAMVAS 87 (199)
T ss_dssp EECTTSSHHHHHHHHHHHHTCEEEEHHHHH--HHHHH-HTCHHHHHH---HHHH-H---TTCCCCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEcHHHHH--HHHHH-hCCHHHHHH---HHHH-H---cCCcCCHHHHHHHHHHHHhcc
Confidence 499999999999999999999999998752 22100 000000000 0011 0 011122222223333444443
Q ss_pred HhcCCceEEEcccHHHH---HHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYI---EALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~---~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
...|+ .||+.|..... +.+... + .....+++|++|.+++.+|+.+|
T Consensus 88 ~~~~~-~vi~dg~~~~~~~~~~l~~~----~--~~~~~~i~l~~~~~~~~~R~~~R 136 (199)
T 2bwj_A 88 LGDTR-GFLIDGYPREVKQGEEFGRR----I--GDPQLVICMDCSADTMTNRLLQM 136 (199)
T ss_dssp TTSCS-CEEEETCCSSHHHHHHHHHH----T--CCCSEEEEEECCHHHHHHHHHHT
T ss_pred cccCc-cEEEeCCCCCHHHHHHHHHh----c--CCCCEEEEEECCHHHHHHHHHcC
Confidence 34455 45666653221 112110 1 12236899999999999999877
No 35
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.30 E-value=1.4e-06 Score=71.99 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=59.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||+++..||+.++..+++.|.+- +...+.. ..+.......+......+ .+..+
T Consensus 17 ~G~~GsGKst~~~~l~~~~~~~~~~~d~~~--~~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~ 76 (180)
T 3iij_A 17 TGTPGVGKTTLGKELASKSGLKYINVGDLA--REEQLYD--------------GYDEEYDCPILDEDRVVD----ELDNQ 76 (180)
T ss_dssp ECSTTSSHHHHHHHHHHHHCCEEEEHHHHH--HHHTCEE--------------EEETTTTEEEECHHHHHH----HHHHH
T ss_pred EeCCCCCHHHHHHHHHHHhCCeEEEHHHHH--hhcchhh--------------hhhhhhcCccCChHHHHH----HHHHH
Confidence 499999999999999999999999998742 2111100 000000000122333333 33344
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.+.|.. |+.+.... + +...+...++||++|.+++.+|+.+|
T Consensus 77 ~~~g~~-vv~~~~~~----~-------~~~~~~~~vi~L~~~~e~l~~R~~~r 117 (180)
T 3iij_A 77 MREGGV-IVDYHGCD----F-------FPERWFHIVFVLRTDTNVLYERLETR 117 (180)
T ss_dssp HHHCCE-EEECSCCT----T-------SCGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred HhcCCE-EEEechhh----h-------cchhcCCEEEEEECCHHHHHHHHHHc
Confidence 455653 33332211 1 11123458899999999999999988
No 36
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.30 E-value=1.5e-06 Score=71.72 Aligned_cols=29 Identities=10% Similarity=0.319 Sum_probs=27.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|++||||||+|..||+.+|..+|++|.+
T Consensus 9 ~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 37 (196)
T 1tev_A 9 LGGPGAGKGTQCARIVEKYGYTHLSAGEL 37 (196)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence 49999999999999999999999999975
No 37
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.29 E-value=1.9e-06 Score=73.69 Aligned_cols=120 Identities=16% Similarity=0.080 Sum_probs=61.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCC-CH-hhhcCCCceec-ccCC-CCCCCCHH-HHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKV-TE-SERQGVPHHLL-GFVD-PEADYPVE-EFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takp-t~-~e~~~v~hhl~-~~~~-~~~~~~~~-~f~~~a~~ 75 (269)
.||.|||||++|..||+++|.++++ +. +|+..---++-+ .. ++.......+. .++. +...++.. .....-.+
T Consensus 12 ~g~~GsGk~ti~~~la~~lg~~~~D-~~--~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (201)
T 3fdi_A 12 GREFGSGGHLVAKKLAEHYNIPLYS-KE--LLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIAIRQFN 88 (201)
T ss_dssp EECTTSSHHHHHHHHHHHTTCCEEC-HH--HHHHTTCC---------------------------------CHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHhCcCEEC-HH--HHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHHHHHHH
Confidence 3899999999999999999999996 33 343211111111 01 11110000000 0000 00001111 11233455
Q ss_pred HHHHHHh-cCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 76 AIDKIIE-NGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 76 ~i~~i~~-~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.+.++.+ ...-.|++|..|-|+ +.+ ...++.|||++|.+++.+|+.+|
T Consensus 89 ~i~~la~~~~~~~Vi~Gr~g~~v---l~~-------~~~~~~V~L~A~~e~r~~R~~~~ 137 (201)
T 3fdi_A 89 FIRKKANEEKESFVIVGRCAEEI---LSD-------NPNMISAFILGDKDTKTKRVMER 137 (201)
T ss_dssp HHHHHHHTSCCCEEEESTTHHHH---TTT-------CTTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCcchh---cCC-------CCCeEEEEEECCHHHHHHHHHHH
Confidence 6666651 334467777555544 321 12468899999999999999776
No 38
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.29 E-value=2e-07 Score=76.91 Aligned_cols=103 Identities=21% Similarity=0.182 Sum_probs=62.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+||||||+|..||+.++.++++.|.+. +.. .+.+ ..+. ++ ......|.......+..+
T Consensus 10 ~G~~GsGKsTla~~La~~l~~~~~d~d~~~--~~~---~g~~-~~~~-------~~------~~g~~~~~~~~~~~~~~l 70 (175)
T 1via_A 10 IGFMGSGKSTLARALAKDLDLVFLDSDFLI--EQK---FNQK-VSEI-------FE------QKRENFFREQEQKMADFF 70 (175)
T ss_dssp ECCTTSCHHHHHHHHHHHHTCEEEEHHHHH--HHH---HTSC-HHHH-------HH------HHCHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHcCCCEEcccHHH--HHH---cCCC-HHHH-------HH------HcCHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999853 210 0111 1110 00 012334555445566666
Q ss_pred HhcCCceEEE-cccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIV-GGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIiv-GGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
...+. .|+. ||. . +++ .+ +. . ...++||++|.+++.+|+.+|
T Consensus 71 ~~~~~-~vi~~g~~-~----~~~-~~--l~-~-~~~~i~l~~~~e~~~~R~~~r 113 (175)
T 1via_A 71 SSCEK-ACIATGGG-F----VNV-SN--LE-K-AGFCIYLKADFEYLKKRLDKD 113 (175)
T ss_dssp TTCCS-EEEECCTT-G----GGS-TT--GG-G-GCEEEEEECCHHHHTTCCCGG
T ss_pred HccCC-EEEECCCC-E----ehh-hH--Hh-c-CCEEEEEeCCHHHHHHHHhcc
Confidence 54444 3444 543 2 111 11 22 1 237899999999999998776
No 39
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.28 E-value=8.9e-07 Score=79.01 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=65.5
Q ss_pred CCCCcCchhHHHHHHHHHc-CCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCH---HHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF-SGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPV---EEFCEHALRA 76 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~---~~f~~~a~~~ 76 (269)
+||+||||||+|..|++++ +..+|+.|.+. +.+.-.+ + +.. ..|+. ..+.....+.
T Consensus 8 ~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r--~~~~~~~--~------g~~----------~~~~~~~~~~~~~~~~~~ 67 (301)
T 1ltq_A 8 IGCPGSGKSTWAREFIAKNPGFYNINRDDYR--QSIMAHE--E------RDE----------YKYTKKKEGIVTGMQFDT 67 (301)
T ss_dssp ECCTTSSHHHHHHHHHHHSTTEEEECHHHHH--HHHTTSC--C------CC-------------CCHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhCCCcEEecccHHH--HHhccCC--c------ccc----------cccchhhhhHHHHHHHHH
Confidence 4999999999999999985 88999999432 2211000 0 000 01221 1222334455
Q ss_pred HHHHH---hcCCceEEEcccHH---HHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 77 IDKII---ENGHLPIIVGGSNT---YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 77 i~~i~---~~~~~pIivGGt~~---Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
+.... +.|. .||+.|+++ +.+.+.. . .-...++..+++|++|.+++.+|+.+|-
T Consensus 68 ~~~~l~~~~~g~-~vi~d~~~~~~~~~~~l~~-~--~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 68 AKSILYGGDSVK-GVIISDTNLNPERRLAWET-F--AKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp HHHHTTSCTTCC-EEEECSCCCCHHHHHHHHH-H--HHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred HHHHHhhccCCC-EEEEeCCCCCHHHHHHHHH-H--HHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 55665 5555 677777653 2322321 0 0011245689999999999999999885
No 40
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.25 E-value=3e-06 Score=68.17 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=24.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
+||+||||||+|..| +.+|..+|+.|.
T Consensus 7 ~G~~GsGKsT~a~~L-~~~g~~~i~~~~ 33 (179)
T 3lw7_A 7 TGMPGSGKSEFAKLL-KERGAKVIVMSD 33 (179)
T ss_dssp ECCTTSCHHHHHHHH-HHTTCEEEEHHH
T ss_pred ECCCCCCHHHHHHHH-HHCCCcEEEHhH
Confidence 499999999999999 999999999774
No 41
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.24 E-value=4.4e-06 Score=67.57 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=27.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+||||||++..||+.++..+++.|.+.
T Consensus 7 ~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~ 36 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLSKELKYPIIKGSSFE 36 (173)
T ss_dssp ECSSSSSHHHHHHHHHHHHCCCEEECCCHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeeecCcccc
Confidence 499999999999999999999999999654
No 42
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.23 E-value=7.2e-06 Score=68.44 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=58.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH-------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA------- 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a------- 73 (269)
+||+|||||||...|+..++.. .+.....+|.+|...|..|+.+|..+ ...|..+.
T Consensus 7 ~GpsGaGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~ge~~g~~~~~~~---------~~~~~~~~~~~~~~e 69 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVS---------VDEFKSMIKNNEFIE 69 (186)
T ss_dssp ESSSSSSHHHHHHHHHHHCGGG--------EECCCEEECSCCCTTCCBTTTBEECC---------HHHHHHHHHTTCEEE
T ss_pred ECCCCCCHHHHHHHHHhhCCcc--------ceEEeeccccCCCCCccCCeeeeecC---------HHHHHHHHhhcceee
Confidence 5999999999999999887421 12234567777877777777777543 22333221
Q ss_pred ------------HHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCH-HHHHHHHHHHH
Q 044048 74 ------------LRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDP-LVLYKYVGIRV 134 (269)
Q Consensus 74 ------------~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~-e~L~~Ri~~Rv 134 (269)
.+.++++.+.|+.+|+. .+..=.+.+.. .......++++.+|. ++|.+|+.+|-
T Consensus 70 ~~~~~~~~yg~~~~~i~~~l~~g~~~il~-~~~~g~~~l~~------~~~~~~~~i~i~~p~~~~l~~Rl~~Rg 136 (186)
T 3a00_A 70 WAQFSGNYYGSTVASVKQVSKSGKTCILD-IDMQGVKSVKA------IPELNARFLFIAPPSVEDLKKRLEGRG 136 (186)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEEE-CCHHHHHHHHT------CGGGCCEEEEEECSCC-----------
T ss_pred EEEEeceeccCcHHHHHHHHHcCCeEEEE-EcHHHHHHHHH------hcCCCeEEEEEECcCHHHHHHHHHhcC
Confidence 24566777888866553 22111111211 012345678888865 99999999884
No 43
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.22 E-value=3.5e-06 Score=71.09 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=61.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||||+..|+..+|..+|+.|.+. +.. ..... ..++... +.....+.......+...
T Consensus 35 ~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~--~~~--------~~~~~-----~~g~~~~--~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVADETGLEFAEADAFH--SPE--------NIATM-----QRGIPLT--DEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp ECCTTSCHHHHHHHHHHHHCCEEEEGGGGS--CHH--------HHHHH-----HTTCCCC--HHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhhCCeEEcccccc--cHH--------HHHHH-----hcCCCCC--CcccccHHHHHHHHHHHH
Confidence 599999999999999999999999988752 100 00000 0111111 112222223333344444
Q ss_pred HhcCCceEEEcccHH-HHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNT-YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~-Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
...|...|+..|... -....+.. ...++.++||++|.+++.+|+.+|
T Consensus 98 ~~~g~~viid~~~~~~~~~~~l~~------~~~~~~vv~l~~~~e~l~~Rl~~R 145 (200)
T 4eun_A 98 ADAGVSTIITCSALKRTYRDVLRE------GPPSVDFLHLDGPAEVIKGRMSKR 145 (200)
T ss_dssp HHTTCCEEEEECCCCHHHHHHHTT------SSSCCEEEEEECCHHHHHHHHTTC
T ss_pred HhcCCCEEEEchhhhHHHHHHHHH------hCCceEEEEEeCCHHHHHHHHHhc
Confidence 456665555543211 01111111 012457899999999999999877
No 44
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.21 E-value=6.4e-07 Score=73.16 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=59.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|||||||+..||..++..+++.|.+- +.+ .++ +..+.. +.+....|.......+..+
T Consensus 10 ~G~~GsGKSTl~~~La~~l~~~~id~d~~~--~~~---~~~-~i~~i~-------------~~~g~~~~~~~~~~~l~~l 70 (173)
T 1kag_A 10 VGPMGAGKSTIGRQLAQQLNMEFYDSDQEI--EKR---TGA-DVGWVF-------------DLEGEEGFRDREEKVINEL 70 (173)
T ss_dssp ECCTTSCHHHHHHHHHHHTTCEEEEHHHHH--HHH---HTS-CHHHHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEeccHHH--HHH---hCc-CHHHHH-------------HHHhHHHHHHHHHHHHHHH
Confidence 599999999999999999999999988642 110 000 010000 0012233444444566666
Q ss_pred HhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.....+.+.+||. . ++......+..... .+++++++.+.+.+|+.+|
T Consensus 71 ~~~~~~v~~~~~~-~----~~~~~~~~~l~~~~-~~i~l~~~~~~l~~R~~~r 117 (173)
T 1kag_A 71 TEKQGIVLATGGG-S----VKSRETRNRLSARG-VVVYLETTIEKQLARTQRD 117 (173)
T ss_dssp HTSSSEEEECCTT-G----GGSHHHHHHHHHHS-EEEECCCCHHHHHSCC---
T ss_pred HhCCCeEEECCCe-E----EecHHHHHHHHhCC-EEEEEeCCHHHHHHHHhCC
Confidence 5555544444442 2 11111001101122 5789999999999999887
No 45
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.21 E-value=1.6e-06 Score=74.69 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=57.3
Q ss_pred CCCCcCchhHHHHHHH-HHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH------
Q 044048 1 MGATATGKTKLSIDLA-IHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA------ 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA-~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a------ 73 (269)
+||+|||||||+..|+ ..++. ++.+.+++|.+|+..+..|+.++..+ ...|....
T Consensus 33 ~Gp~GsGKSTl~~~L~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~~~~~---------~~~~~~~~~~~~~~ 94 (231)
T 3lnc_A 33 SSPSGCGKTTVANKLLEKQKNN---------IVKSVSVTTRAARKGEKEGKDYYFVD---------REEFLRLCSNGEII 94 (231)
T ss_dssp ECSCC----CHHHHHHC----C---------EEECCCEESSCCCTTCCBTTTBEECC---------HHHHHHHHHTTCEE
T ss_pred ECCCCCCHHHHHHHHHhcCCCC---------cccccccCCCCCCccccCCCeEEEec---------HHHhhhhhhcCcee
Confidence 5999999999999999 76542 46677899999988888888877543 22222221
Q ss_pred -------------HHHHHHHHhcCCceEEEc---ccHHHHHHHHcchhhhhcccc--ceEEEEE-eCCHHHHHHHHHHH
Q 044048 74 -------------LRAIDKIIENGHLPIIVG---GSNTYIEALVEDSIINFRANY--DCCFIWM-DVDPLVLYKYVGIR 133 (269)
Q Consensus 74 -------------~~~i~~i~~~~~~pIivG---Gt~~Y~~~ll~g~~~~~~~~~--~~~~~~l-~~~~e~L~~Ri~~R 133 (269)
.+.++++.+.++.+|+.. |...| ...+ .+..+|+ .++.++|.+|+.+|
T Consensus 95 ~~~~~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~~~~------------~~~~~~~~~~v~v~~~~~~~l~~Rl~~R 161 (231)
T 3lnc_A 95 EHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKF------------MEMMREHVVSIFIMPPSMEELRRRLCGR 161 (231)
T ss_dssp EEEEETTEEEEEECTTHHHHHHHTCEEEEECCHHHHHHH------------HHHSGGGEEEEEEECSCHHHHHHC----
T ss_pred hhhhhccccCCCCHHHHHHHHHcCCeEEEEcCHHHHHHH------------HHhcCCCeEEEEEECCcHHHHHHHHHHc
Confidence 123555566777666532 22221 1122 3455555 55789999999888
No 46
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.21 E-value=2.5e-06 Score=70.26 Aligned_cols=29 Identities=14% Similarity=0.352 Sum_probs=26.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|++||||||+|..|++.+|..+|++|.+
T Consensus 12 ~G~~GsGKsT~~~~L~~~l~~~~i~~d~~ 40 (194)
T 1qf9_A 12 LGGPGSGKGTQCANIVRDFGWVHLSAGDL 40 (194)
T ss_dssp EESTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEeeHHHH
Confidence 49999999999999999999999999864
No 47
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.19 E-value=2.7e-06 Score=70.20 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=26.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||+.+|.++|++|.+
T Consensus 10 ~G~~GsGKST~~~~La~~l~~~~i~~d~~ 38 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLAQELGFKKLSTGDI 38 (186)
T ss_dssp ECCTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 49999999999999999999999999864
No 48
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.17 E-value=3.5e-06 Score=75.52 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=26.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|+.||||||+|..|+ .+|.++|++|.+
T Consensus 81 ~G~~GSGKSTva~~La-~lg~~~id~D~~ 108 (281)
T 2f6r_A 81 TGISGSGKSSVAQRLK-NLGAYIIDSDHL 108 (281)
T ss_dssp EECTTSCHHHHHHHHH-HHTCEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHH-HCCCcEEehhHH
Confidence 4999999999999999 689999999986
No 49
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.16 E-value=4.5e-06 Score=68.69 Aligned_cols=28 Identities=14% Similarity=0.067 Sum_probs=25.3
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds 28 (269)
.||+||||||++..||+.++ .++|+.|.
T Consensus 9 ~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~ 41 (192)
T 1kht_A 9 TGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41 (192)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence 49999999999999999998 78888775
No 50
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.14 E-value=4.6e-06 Score=73.00 Aligned_cols=124 Identities=16% Similarity=0.274 Sum_probs=69.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCe----------eeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGE----------AINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFC 70 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e----------iIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~ 70 (269)
.||+||||||+|..||+.+|.+ +|++|.+ |+.+.-++ .....++. +.+-+| +.|+...+.
T Consensus 28 ~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~--~~~~~~~~--~~~~~~g~-----~~f~~~-~~~d~~~l~ 97 (252)
T 1uj2_A 28 SGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF--YRVLTSEQ--KAKALKGQ-----FNFDHP-DAFDNELIL 97 (252)
T ss_dssp ECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG--BCCCCHHH--HHHHHTTC-----SCTTSG-GGBCHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc--ccccChhh--hhhhccCC-----CCCCCc-chhhHHHHH
Confidence 4999999999999999999987 7999984 56532100 00011111 122223 246666555
Q ss_pred HHHHHHHHHHHh-----------------------cCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHH
Q 044048 71 EHALRAIDKIIE-----------------------NGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLY 127 (269)
Q Consensus 71 ~~a~~~i~~i~~-----------------------~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~ 127 (269)
+.. +.+.. ...-.||+-|..++.+. .+...++ .++||+++.+++.
T Consensus 98 ~~L----~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~-------~~~~~~d-~vi~l~~~~e~~~ 165 (252)
T 1uj2_A 98 KTL----KEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ-------EVRDLFQ-MKLFVDTDADTRL 165 (252)
T ss_dssp HHH----HHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH-------HHHHHCS-EEEEEECCHHHHH
T ss_pred HHH----HHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH-------HHHHhcC-eeEEEeCCHHHHH
Confidence 443 33321 02223455554322111 1111233 6899999999999
Q ss_pred HHHHHHHHHHHHcCc-HHHHHh
Q 044048 128 KYVGIRVDKMVETGL-VDEVRD 148 (269)
Q Consensus 128 ~Ri~~Rv~~Ml~~Gl-l~Ev~~ 148 (269)
+|+..|- +...|. .+++..
T Consensus 166 ~R~~~R~--~~~rg~~~e~i~~ 185 (252)
T 1uj2_A 166 SRRVLRD--ISERGRDLEQILS 185 (252)
T ss_dssp HHHHHHH--HHHSCCCHHHHHH
T ss_pred HHHHHHH--HhhhCCCHHHHHH
Confidence 9998873 344454 334443
No 51
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.13 E-value=3.8e-06 Score=69.32 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=25.4
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~Ds 28 (269)
.|+.||||||+|..|++.+ |.++|++|.
T Consensus 6 ~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp ECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4999999999999999998 889998873
No 52
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.12 E-value=5.7e-06 Score=68.24 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=60.2
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCH----HHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPV----EEFCEHA 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~----~~f~~~a 73 (269)
+|++||||||++..|+..+ |.++|..|+-.+-+.+.. ...|.. ..|.+.+
T Consensus 11 ~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~ 67 (179)
T 2pez_A 11 TGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK-----------------------NLGFSPEDREENVRRIA 67 (179)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT-----------------------TCCSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhh-----------------------ccccccccHHHHHHHHH
Confidence 4999999999999999988 878887776544333210 001222 2333332
Q ss_pred HHHHHHHH-hcCCceEEEcccHHHHH--HHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 74 LRAIDKII-ENGHLPIIVGGSNTYIE--ALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 74 ~~~i~~i~-~~~~~pIivGGt~~Y~~--~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
. ...++ +.| ..+++|+..-|.. ..+..... .......++||++|.+++.+|+.+|
T Consensus 68 ~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 68 E--VAKLFADAG-LVCITSFISPYTQDRNNARQIHE--GASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp H--HHHHHHHTT-CEEEEECCCCCHHHHHHHHHHHH--HTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred H--HHHHHHHCC-CEEEEecCCcchHHHHHHHHHhh--ccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 2 12333 444 4566666544421 11110000 0123457899999999999998665
No 53
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.10 E-value=1.3e-05 Score=66.40 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=57.2
Q ss_pred CCCCcCchhHHHHHHHHHcC---C--eeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHH---H
Q 044048 1 MGATATGKTKLSIDLAIHFS---G--EAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCE---H 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~---~--eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~---~ 72 (269)
+|++||||||++..||+.++ + .+++.|.+. ..+. ....|+..+... .
T Consensus 19 ~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~--~~~~-----------------------~~~~~~~~~r~~~~~~ 73 (186)
T 2yvu_A 19 TGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR--TTVS-----------------------EGAGFTREERLRHLKR 73 (186)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH--TTTT-----------------------TTCCCCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH--HHHh-----------------------hccCCChhhHHHHHHH
Confidence 49999999999999999874 2 345555431 2221 011233332221 1
Q ss_pred HHHHHHHHHhcCCceEEEcccHHHHH--HHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 73 ALRAIDKIIENGHLPIIVGGSNTYIE--ALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 73 a~~~i~~i~~~~~~pIivGGt~~Y~~--~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.......+...| ..|++||+..|-. ..+..... ....+.+++||++|.+++.+|+.++
T Consensus 74 ~~~~~~~~~~~g-~~vi~d~~~~~~~~r~~~~~~~~--~~~~~~~~v~L~~~~e~~~~R~~~~ 133 (186)
T 2yvu_A 74 IAWIARLLARNG-VIVICSFVSPYKQARNMVRRIVE--EEGIPFLEIYVKASLEEVIRRDPKG 133 (186)
T ss_dssp HHHHHHHHHTTT-CEEEEECCCCCHHHHHHHHHHHH--HTTCCEEEEEEECCHHHHHHHCHHH
T ss_pred HHHHHHHHHhCC-CEEEEeCccccHHHHHHHHHHhh--ccCCCeEEEEEeCCHHHHHHhhhhh
Confidence 112222233444 4677777654421 11110000 0123578899999999999998654
No 54
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.09 E-value=3.3e-07 Score=75.62 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=23.5
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds 28 (269)
+||+||||||++..|+++++ ..+++.|.
T Consensus 7 ~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 7 TGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 49999999999999999997 56666554
No 55
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.07 E-value=9.7e-07 Score=75.20 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=28.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
+||+||||||++..|++.+|.+++++|.+..
T Consensus 11 ~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 11 DGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp ECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5999999999999999999999999998653
No 56
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.07 E-value=2.3e-06 Score=71.96 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=26.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||+.++.++|++|.+
T Consensus 26 ~G~~GsGKST~a~~La~~l~~~~i~~d~~ 54 (201)
T 2cdn_A 26 LGPPGAGKGTQAVKLAEKLGIPQISTGEL 54 (201)
T ss_dssp ECCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEehhHH
Confidence 49999999999999999999999999864
No 57
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.04 E-value=3.1e-06 Score=70.53 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=26.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|++||||||++..||+. |.++|++|.+
T Consensus 14 ~G~~GsGKST~~~~La~~-g~~~id~d~~ 41 (203)
T 1uf9_A 14 TGNIGSGKSTVAALLRSW-GYPVLDLDAL 41 (203)
T ss_dssp EECTTSCHHHHHHHHHHT-TCCEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHC-CCEEEcccHH
Confidence 499999999999999998 9999999974
No 58
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.04 E-value=7.2e-06 Score=69.94 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=27.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||+.++..+|++|.+
T Consensus 10 ~G~~GsGKsT~a~~La~~l~~~~i~~d~~ 38 (220)
T 1aky_A 10 IGPPGAGKGTQAPNLQERFHAAHLATGDM 38 (220)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHcCceEEehhHH
Confidence 49999999999999999999999999764
No 59
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.04 E-value=6.5e-06 Score=70.35 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=27.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+|++||||||+|..||+.++.++|+.|.+-
T Consensus 11 ~G~~GsGKsT~a~~La~~l~~~~i~~d~li 40 (217)
T 3be4_A 11 IGAPGSGKGTQCEFIKKEYGLAHLSTGDML 40 (217)
T ss_dssp EECTTSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCceEEehhHHH
Confidence 499999999999999999999999998753
No 60
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.03 E-value=2e-05 Score=66.29 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=56.6
Q ss_pred CCCCcCchhHHHHHHHHHc---CCe--eeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHH---H
Q 044048 1 MGATATGKTKLSIDLAIHF---SGE--AINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCE---H 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~e--iIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~---~ 72 (269)
+||+|||||||+..||..+ |.. .+..|.+ .+.+. ....|+..+... .
T Consensus 31 ~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~--~~~~~-----------------------~~~~~~~~~~~~~~~~ 85 (200)
T 3uie_A 31 TGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV--RHGLN-----------------------RDLSFKAEDRAENIRR 85 (200)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH--TTTTT-----------------------TTCCSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh--hhHhh-----------------------cccCcChHHHHHHHHH
Confidence 5999999999999999998 433 4444433 23221 011234433332 2
Q ss_pred HHHHHHHHHhcCCceEEEcccH--HHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHH
Q 044048 73 ALRAIDKIIENGHLPIIVGGSN--TYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVG 131 (269)
Q Consensus 73 a~~~i~~i~~~~~~pIivGGt~--~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~ 131 (269)
.......+...|...|+.++.. -+.+.+.. ......+..+||++|.+++.+|+.
T Consensus 86 ~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~-----~~~~~~~~~v~L~a~~e~~~~R~~ 141 (200)
T 3uie_A 86 VGEVAKLFADAGIICIASLISPYRTDRDACRS-----LLPEGDFVEVFMDVPLSVCEARDP 141 (200)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCHHHHHHHHH-----TSCTTSEEEEEECCCHHHHHHHCT
T ss_pred HHHHHHHHHhCCceEEEecCCchHHHHHHHHH-----hcCCCCEEEEEEeCCHHHHHHhcc
Confidence 2233444455565444433332 22222221 112345778999999999999963
No 61
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.03 E-value=6.6e-06 Score=69.79 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=27.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||+.+|..+|++|.+
T Consensus 6 ~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 34 (216)
T 3dl0_A 6 MGLPGAGKGTQGERIVEKYGIPHISTGDM 34 (216)
T ss_dssp ECSTTSSHHHHHHHHHHHSSCCEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence 49999999999999999999999999764
No 62
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.03 E-value=1e-05 Score=67.42 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=27.4
Q ss_pred CCCCcCchhHHHHHHHHH-cCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIH-FSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~-~~~eiIs~Ds~Q 30 (269)
+|++||||||+|..||+. +|..+|++|.+-
T Consensus 16 ~G~~GsGKSTv~~~La~~l~g~~~id~d~~~ 46 (184)
T 1y63_A 16 TGTPGTGKTSMAEMIAAELDGFQHLEVGKLV 46 (184)
T ss_dssp ECSTTSSHHHHHHHHHHHSTTEEEEEHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCCEEeeHHHHH
Confidence 599999999999999999 799999999753
No 63
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.02 E-value=2.6e-06 Score=73.22 Aligned_cols=29 Identities=31% Similarity=0.546 Sum_probs=27.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||+.++..+|+.|.+
T Consensus 13 ~G~~GsGKsT~a~~La~~l~~~~i~~d~~ 41 (227)
T 1zd8_A 13 MGAPGSGKGTVSSRITTHFELKHLSSGDL 41 (227)
T ss_dssp EECTTSSHHHHHHHHHHHSSSEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEechHH
Confidence 49999999999999999999999999874
No 64
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.00 E-value=1.1e-05 Score=70.95 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=27.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+||||||++..||+++|...++.|.+-
T Consensus 33 ~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 33 DGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 599999999999999999999998887753
No 65
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.00 E-value=1.3e-05 Score=67.62 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=27.3
Q ss_pred CCCCcCchhHHHHHHHHHc-CCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHF-SGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-~~eiIs~Ds~Q 30 (269)
+||+||||||++..|++.+ +..+|+.|..-
T Consensus 27 ~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~ 57 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQKHLPNCSVISQDDFF 57 (207)
T ss_dssp EESTTSSHHHHHHHHHTTSTTEEEEEGGGGB
T ss_pred ECCCCCCHHHHHHHHHHhcCCcEEEeCCccc
Confidence 4999999999999999998 78999999753
No 66
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.96 E-value=2.7e-05 Score=66.14 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=25.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|++||||||++..||+ +|.++|++|.+
T Consensus 10 ~G~~GSGKST~~~~L~~-lg~~~id~D~~ 37 (218)
T 1vht_A 10 TGGIGSGKSTVANAFAD-LGINVIDADII 37 (218)
T ss_dssp ECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHH-cCCEEEEccHH
Confidence 49999999999999998 89999999974
No 67
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.95 E-value=3.3e-05 Score=67.35 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=62.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcccee-cCCccccCCCCHhhhc-CCCce-ecccC---------CCC--CCCCH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVY-KGLDIATNKVTESERQ-GVPHH-LLGFV---------DPE--ADYPV 66 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvY-k~l~I~Takpt~~e~~-~v~hh-l~~~~---------~~~--~~~~~ 66 (269)
.|+.|||||++|..||+++|.++++.|-+.-. +...+..... ++.. ..+.. +..+. .+. ..+..
T Consensus 20 ~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~~--~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (223)
T 3hdt_A 20 EREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFF--RLADEKAGNNLLYRLGGGRKIDLHSKPSPNDKLTS 97 (223)
T ss_dssp EECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------------
T ss_pred eCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHHH--HHHHhhccccHHHHHhccccccccccccccccccc
Confidence 38999999999999999999999997764321 1111111111 0011 01111 11111 010 01111
Q ss_pred H-HHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 67 E-EFCEHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 67 ~-~f~~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
. .....-.+.|.++.+++. .|++|-.|-|+-.++.+ .-++..|||++|.+.+.+|+.+|
T Consensus 98 ~~~~f~~~~~~i~~la~~~~-~Vi~Grggg~vl~~~~~-------~~~~~~VfL~A~~e~r~~Ri~~~ 157 (223)
T 3hdt_A 98 PENLFKFQSEVMRELAESEP-CIFVGRAAGYVLDQDED-------IERLIRIFVYTDKVKKVQRVMEV 157 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-EEEESTTHHHHHHHCTT-------CCEEEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-EEEEeCCcchhcccccC-------CCCeEEEEEECCHHHHHHHHHHh
Confidence 1 112333456667755554 56665545454111121 12478899999999999999776
No 68
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.93 E-value=8.5e-06 Score=68.97 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=26.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||+.+|..+|++|.+
T Consensus 6 ~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 34 (216)
T 3fb4_A 6 MGLPGAGKGTQAEQIIEKYEIPHISTGDM 34 (216)
T ss_dssp ECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEeeHHHH
Confidence 49999999999999999999999999764
No 69
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.93 E-value=2e-05 Score=67.81 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=26.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
.||+||||||+|..||+.+|..+|+.|.+
T Consensus 6 ~G~~GsGKsT~a~~La~~lg~~~i~~dd~ 34 (223)
T 2xb4_A 6 FGPNGSGKGTQGNLVKDKYSLAHIESGGI 34 (223)
T ss_dssp ECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEchHHH
Confidence 49999999999999999999999999874
No 70
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.93 E-value=1e-05 Score=69.13 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=26.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||+.++...|++|.+
T Consensus 11 ~G~~GsGKsT~~~~La~~l~~~~i~~d~~ 39 (222)
T 1zak_A 11 SGAPASGKGTQCELIKTKYQLAHISAGDL 39 (222)
T ss_dssp EESTTSSHHHHHHHHHHHHCCEECCHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCceecHHHH
Confidence 49999999999999999999999998864
No 71
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.92 E-value=5.4e-06 Score=68.73 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=22.5
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeC
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINS 26 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~ 26 (269)
.||.||||||++..|++.+ |.+++..
T Consensus 6 ~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 4999999999999999999 8888754
No 72
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.80 E-value=2.3e-05 Score=66.57 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=26.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||+.+|..+|++|.+
T Consensus 6 ~G~~GsGKsT~a~~L~~~~g~~~i~~d~~ 34 (214)
T 1e4v_A 6 LGAPVAGKGTQAQFIMEKYGIPQISTGDM 34 (214)
T ss_dssp EESTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence 49999999999999999999999999764
No 73
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.77 E-value=2.6e-05 Score=68.13 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=27.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..|++.+|..+|++|.+
T Consensus 35 ~G~~GsGKsT~a~~L~~~~g~~~is~~~~ 63 (243)
T 3tlx_A 35 LGAPGSGKGTQSLNLKKSHCYCHLSTGDL 63 (243)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEecHHH
Confidence 49999999999999999999999999864
No 74
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.74 E-value=4.8e-05 Score=66.11 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
+||+||||||.|..||+++|...||+..
T Consensus 35 lGpPGsGKgTqa~~L~~~~g~~hIstGd 62 (217)
T 3umf_A 35 LGGPGSGKGTQCEKLVQKFHFNHLSSGD 62 (217)
T ss_dssp ECCTTCCHHHHHHHHHHHHCCEEECHHH
T ss_pred ECCCCCCHHHHHHHHHHHHCCceEcHHH
Confidence 5999999999999999999999999754
No 75
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.74 E-value=7.3e-05 Score=74.58 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=62.5
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCC----HHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYP----VEEFCEHA 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~----~~~f~~~a 73 (269)
+|+.||||||+|..|++.+ |..++..|+-.+-.++.+. ..|+ ...|++.
T Consensus 58 tGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~-----------------------~~fs~~dree~~r~i- 113 (630)
T 1x6v_B 58 TGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKN-----------------------LGFSPEDREENVRRI- 113 (630)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTT-----------------------CCSSHHHHHHHHHHH-
T ss_pred EeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCcc-----------------------ccCChhhhHHHHHHH-
Confidence 4999999999999999999 8888888754443343211 1233 2233332
Q ss_pred HHHHHHHHhcCCceEEEcccHHH---H---HHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHH
Q 044048 74 LRAIDKIIENGHLPIIVGGSNTY---I---EALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 74 ~~~i~~i~~~~~~pIivGGt~~Y---~---~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~R 133 (269)
.+.++.+.+.|. .|+++++..| . ..++. ....+++++||++|.+++.+|+.++
T Consensus 114 ~eva~~~l~~G~-iVI~d~~s~~~~~r~~~r~ll~------~~g~p~~vV~Ldap~Evl~~Rl~r~ 172 (630)
T 1x6v_B 114 AEVAKLFADAGL-VCITSFISPYTQDRNNARQIHE------GASLPFFEVFVDAPLHVCEQRDVKG 172 (630)
T ss_dssp HHHHHHHHHTTC-EEEEECCCCCHHHHHHHHHHHH------TTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HHHHHHHHhCCC-EEEEeCchhhHHHHHHHHHHHH------hCCCCeEEEEEECCHHHHHHHhccc
Confidence 234444455665 4455544333 1 12221 1124578999999999999998743
No 76
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.73 E-value=0.00015 Score=61.46 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=56.8
Q ss_pred CCCCcCchhHHHHHHHHHcC------CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCH---HHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS------GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPV---EEFCE 71 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~------~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~---~~f~~ 71 (269)
+|++||||||++..|++.++ ..+++.|.+. ..+... ..|.. ..+.+
T Consensus 31 ~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r--~~l~~~-----------------------~~~~~~~r~~~~~ 85 (211)
T 1m7g_A 31 TGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR--FGLNKD-----------------------LGFSEADRNENIR 85 (211)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT--TTTTTT-----------------------CCSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh--hhhccc-----------------------cCCCHHHHHHHHH
Confidence 49999999999999999886 4455544432 333110 11231 12223
Q ss_pred HHHHHHHHHHhcCCceEEEcccHH---HHHHHHcchhhhh----ccccceEEEEEeCCHHHHHHHH
Q 044048 72 HALRAIDKIIENGHLPIIVGGSNT---YIEALVEDSIINF----RANYDCCFIWMDVDPLVLYKYV 130 (269)
Q Consensus 72 ~a~~~i~~i~~~~~~pIivGGt~~---Y~~~ll~g~~~~~----~~~~~~~~~~l~~~~e~L~~Ri 130 (269)
.....+....+.|...|+. ++.. +.+.+. .....+ ....+..++||++|.+++.+|+
T Consensus 86 ~~~~~~~~~l~~g~~VI~d-~~~~~~~~~~~l~-~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 86 RIAEVAKLFADSNSIAITS-FISPYRKDRDTAR-QLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHHHHHHHHHTTCEEEEE-CCCCCHHHHHHHH-HHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHHHHHHHHHCCCEEEEe-cCCccHHHHHHHH-HHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 3333445556677755544 3322 222111 110000 0123478999999999999996
No 77
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.68 E-value=0.00024 Score=60.02 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=27.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|++|||||+++..||+.+|..++++|.+
T Consensus 9 ~G~~gsGkst~~~~l~~~~g~~~~~~d~~ 37 (219)
T 2h92_A 9 DGPAAAGKSTIAKRVASELSMIYVDTGAM 37 (219)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCceecCChH
Confidence 49999999999999999999999999985
No 78
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.67 E-value=5.8e-05 Score=65.09 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=26.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|++||||||+|..||+.++..+|++|.+
T Consensus 22 ~G~~GsGKsT~a~~La~~l~~~~i~~d~l 50 (233)
T 1ak2_A 22 LGPPGAGKGTQAPKLAKNFCVCHLATGDM 50 (233)
T ss_dssp ECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCceecHHHH
Confidence 49999999999999999999999999864
No 79
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.65 E-value=9.3e-05 Score=61.66 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=19.6
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||.||||||+|..||+.++.
T Consensus 10 ~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 10 EGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp ECCTTSSHHHHHHHHHHHHTT
T ss_pred EcCCCCCHHHHHHHHHHHHhh
Confidence 499999999999999999876
No 80
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.64 E-value=0.00017 Score=59.65 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=24.9
Q ss_pred CCCCcCchhHHHHHHHHHcCC-eeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSG-EAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~-eiIs~Ds~ 29 (269)
+||+|||||||+..|+..+++ ..|+.|.+
T Consensus 8 ~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37 (189)
T ss_dssp ECSTTSSHHHHHHHHHHHSSSEEEEEHHHH
T ss_pred ECCCCCcHHHHHHHHhcccCCeEEEcccch
Confidence 599999999999999998877 56777764
No 81
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.63 E-value=0.00021 Score=59.41 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=17.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+||||||++..|+..+
T Consensus 12 ~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ECSTTSCHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHHhh
Confidence 5999999999999999887
No 82
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.61 E-value=0.00064 Score=57.28 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=30.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceec
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLL 55 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~ 55 (269)
+||+|||||||...|+..+.. + ........|.+|..-+..|++++.+
T Consensus 10 vGpsGaGKSTLl~~L~~~~~~-~-------~~~~v~~ttr~~~~g~~~g~~~~~~ 56 (198)
T 1lvg_A 10 SGPSGAGKSTLLKKLFQEHSS-I-------FGFSVSHTTRNPRPGEEDGKDYYFV 56 (198)
T ss_dssp ECCTTSSHHHHHHHHHHHHTT-T-------EEECCCEECSCCCTTCCBTTTBEEC
T ss_pred ECCCCCCHHHHHHHHHhhCch-h-------ceeeeeeeccCCCCcccCCceEEEc
Confidence 599999999999999987651 1 1112234455566655666666643
No 83
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.59 E-value=0.00016 Score=63.49 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=26.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||+|..||++++.++||+|.+
T Consensus 14 ~G~pGsGKsT~a~~L~~~~g~~~is~gdl 42 (230)
T 3gmt_A 14 LGAPGAGKGTQANFIKEKFGIPQISTGDM 42 (230)
T ss_dssp ECCTTSCHHHHHHHHHHHHTCCEECHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeeechHH
Confidence 49999999999999999999999998753
No 84
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.54 E-value=0.0002 Score=69.72 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=60.6
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHH---HH
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFC---EH 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~---~~ 72 (269)
+|++|||||++|..||+.++ ..++|+|.+. +.+ .+.. .-.++.++. +...|. ..
T Consensus 41 vGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r--~~~------------~~~~-~~~~~f~~~---~~~~~~~re~~ 102 (520)
T 2axn_A 41 VGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR--REA------------VKQY-SSYNFFRPD---NEEAMKVRKQC 102 (520)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH--HHH------------HSCC-CCGGGGCTT---CHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH--HHh------------ccCC-ccccccCcc---cHHHHHHHHHH
Confidence 59999999999999999874 3568888743 111 1100 011333332 333332 22
Q ss_pred HHHHHHH---HH-hcCCceEEEcccHH---HHHHHHcchhhhhccccceEEEEEeCC-HHHHHHHHHHHH
Q 044048 73 ALRAIDK---II-ENGHLPIIVGGSNT---YIEALVEDSIINFRANYDCCFIWMDVD-PLVLYKYVGIRV 134 (269)
Q Consensus 73 a~~~i~~---i~-~~~~~pIivGGt~~---Y~~~ll~g~~~~~~~~~~~~~~~l~~~-~e~L~~Ri~~Rv 134 (269)
+..++++ .+ ..+...||+.+|+. |.+.+..-. -...+.++++++.++ .+.+.+|+.+|.
T Consensus 103 ~~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a---~~~g~~v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 103 ALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFA---KENDFKAFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHH---HHHTCEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHH---HHcCCeEEEEEEeCChHHHHHHHHHhhh
Confidence 3333332 22 23344566555543 333332100 011234567777776 788999997774
No 85
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.51 E-value=2.6e-05 Score=65.44 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=24.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
+|+.||||||++..|++.++...+++|.
T Consensus 16 ~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 16 EGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 4999999999999999999877777653
No 86
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.50 E-value=0.00012 Score=61.24 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~D 27 (269)
+|+.||||||++..|++.++...+++|
T Consensus 15 ~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 15 EGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 499999999999999999876555544
No 87
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.48 E-value=9.2e-05 Score=65.08 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=28.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~ 34 (269)
.||+||||||++..||+.++..+++.|.+ |+.
T Consensus 15 ~G~~GsGKsTla~~la~~lg~~~~d~g~~--~r~ 46 (233)
T 3r20_A 15 DGPAGTGKSSVSRGLARALGARYLDTGAM--YRI 46 (233)
T ss_dssp ECCTTSSHHHHHHHHHHHHTCEEEEHHHH--HHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcccCCcH--HHH
Confidence 49999999999999999999999999985 454
No 88
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.43 E-value=0.00018 Score=62.24 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=70.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc--ceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHH------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI--QVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEH------ 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~--QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~------ 72 (269)
+|..||||||++..|++ +|.++|++|.+ ++|.. +.+...+. +.+..-++++++...+-..-.+.
T Consensus 15 TGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~-----~~~~~~~i--~~~fG~~~~~~dg~ldR~~L~~~vF~d~~ 86 (210)
T 4i1u_A 15 TGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAP-----AGLAMPAI--EQTFGPAFVAADGSLDRARMRALIFSDED 86 (210)
T ss_dssp ECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTST-----TCTTHHHH--HHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred ECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcC-----CcHHHHHH--HHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence 48999999999999998 99999999984 33431 22333322 12233455666555553332221
Q ss_pred HHHHHHH-------------HHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 044048 73 ALRAIDK-------------IIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGIRVDKMVE 139 (269)
Q Consensus 73 a~~~i~~-------------i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~Ml~ 139 (269)
+++.++. +...+...|++-.. ++++. . .+...++ .++++++|.++..+|+.+|-
T Consensus 87 ~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~p-LL~E~----~--~~~~~~D-~vi~V~ap~e~r~~Rl~~Rd----- 153 (210)
T 4i1u_A 87 ARRRLEAITHPLIRAETEREARDAQGPYVIFVVP-LLVES----R--NWKARCD-RVLVVDCPVDTQIARVMQRN----- 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECT-TCTTC----H--HHHHHCS-EEEEEECCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEe-ccccc----C--CccccCC-eEEEEECCHHHHHHHHHhcC-----
Confidence 1112221 11223323444333 22210 0 1111233 67889999999999998883
Q ss_pred cCcH-HHHHhhc
Q 044048 140 TGLV-DEVRDMF 150 (269)
Q Consensus 140 ~Gll-~Ev~~l~ 150 (269)
|+- +|+...+
T Consensus 154 -g~s~eea~~ri 164 (210)
T 4i1u_A 154 -GFTREQVEAII 164 (210)
T ss_dssp -CCCHHHHHHHH
T ss_pred -CCCHHHHHHHH
Confidence 553 4455544
No 89
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.42 E-value=0.00019 Score=61.62 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=26.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
+||+||||+|.|..||+++|.+.||+..
T Consensus 6 ~GpPGsGKgTqa~~La~~~g~~~istGd 33 (206)
T 3sr0_A 6 LGPPGAGKGTQAKRLAKEKGFVHISTGD 33 (206)
T ss_dssp ECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred ECCCCCCHHHHHHHHHHHHCCeEEcHHH
Confidence 5999999999999999999999999755
No 90
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.40 E-value=0.00017 Score=65.27 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=25.2
Q ss_pred CCCCcCchhHHHHHHHHHcC-------CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-------GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-------~eiIs~Ds~Q 30 (269)
+||+|||||||+..|+..++ ..+|++|...
T Consensus 86 ~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred ECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 59999999999999998776 4578888754
No 91
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.40 E-value=4.3e-05 Score=64.98 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=27.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+|++||||||+|..|++.+|.++|++|.+
T Consensus 18 tG~~GSGKSTva~~L~~~lg~~vid~D~~ 46 (192)
T 2grj_A 18 TGKIGTGKSTVCEILKNKYGAHVVNVDRI 46 (192)
T ss_dssp ECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCEEEECcHH
Confidence 49999999999999999999999999986
No 92
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.39 E-value=0.00049 Score=59.67 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=18.8
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.||.||||||++..|++.++
T Consensus 32 ~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 32 EGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp ECCTTSCHHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHHh
Confidence 49999999999999999987
No 93
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.34 E-value=0.0019 Score=55.68 Aligned_cols=117 Identities=9% Similarity=0.042 Sum_probs=62.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCC-----C----CC--CCCHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVD-----P----EA--DYPVEEF 69 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~-----~----~~--~~~~~~f 69 (269)
+||+|||||||...|+..+.. | .+.-...+.|..|...+..++.+++.+.-. . -+ .|.. .+
T Consensus 22 ~GpsGsGKSTLlk~L~g~~~p-----~--~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~-~~ 93 (219)
T 1s96_A 22 SAPSGAGKSSLIQALLKTQPL-----Y--DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG-NY 93 (219)
T ss_dssp ECCTTSCHHHHHHHHHHHSCT-----T--TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT-EE
T ss_pred ECCCCCCHHHHHHHHhccCCC-----C--ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh-cc
Confidence 599999999999999987652 1 111234556666666667777777554210 0 00 0000 00
Q ss_pred HHHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHHH
Q 044048 70 CEHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVGI 132 (269)
Q Consensus 70 ~~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~~ 132 (269)
.....+.+.++.+.|++.|+- ...-..+.+.. .+. ....++.+..+.+.+.+|+..
T Consensus 94 yg~~~~~v~~~l~~G~illLD-LD~~~~~~i~~----~l~--~~~tI~i~th~~~~l~~Rl~~ 149 (219)
T 1s96_A 94 YGTSREAIEQVLATGVDVFLD-IDWQGAQQIRQ----KMP--HARSIFILPPSKIELDRRLRG 149 (219)
T ss_dssp EEEEHHHHHHHHTTTCEEEEE-CCHHHHHHHHH----HCT--TCEEEEEECSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhcCCeEEEE-ECHHHHHHHHH----Hcc--CCEEEEEECCCHHHHHHHHHH
Confidence 000123456666778776666 33222222222 111 134555566778888887633
No 94
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.30 E-value=0.00069 Score=57.22 Aligned_cols=30 Identities=37% Similarity=0.485 Sum_probs=25.7
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~Q 30 (269)
+||+|||||||+..|+..++ ..+|+.|...
T Consensus 28 ~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 28 SGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp ECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 59999999999999999875 5688888754
No 95
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.11 E-value=8.5e-06 Score=69.13 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=48.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhh-hcCCCceecccCC----CCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESE-RQGVPHHLLGFVD----PEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e-~~~v~hhl~~~~~----~~~~~~~~~f~~~a~~ 75 (269)
+|++|||||++|.+||+. +.++ +| |.|+.+..+| +..|.||....-+ .++..+.. +
T Consensus 5 ~Gg~~SGKS~~A~~la~~-~~~~-------~y----iaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~-------~ 65 (180)
T 1c9k_A 5 TGGARSGKSRHAEALIGD-APQV-------LY----IATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLD-------T 65 (180)
T ss_dssp EECTTSSHHHHHHHHHCS-CSSE-------EE----EECCCC------CHHHHHHHTSCTTEEEECCSSCGG-------G
T ss_pred ECCCCCcHHHHHHHHHhc-CCCe-------EE----EecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHH-------H
Confidence 499999999999999987 6554 33 7777764444 4557777554211 11112222 1
Q ss_pred HHHHHHhcCCceEEEcccHHHHHHHHc
Q 044048 76 AIDKIIENGHLPIIVGGSNTYIEALVE 102 (269)
Q Consensus 76 ~i~~i~~~~~~pIivGGt~~Y~~~ll~ 102 (269)
.+... ....-+|++.+-++++..++.
T Consensus 66 ~l~~~-~~~~~~VLvDclt~wl~n~l~ 91 (180)
T 1c9k_A 66 LITAD-LAPDDAILLECITTMVTNLLF 91 (180)
T ss_dssp TSCTT-SCTTCEEEEECHHHHHHHHHH
T ss_pred HHHhh-cccCCeEEEcCHHHHHHHHHh
Confidence 12221 122238999999999988875
No 96
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.09 E-value=0.00012 Score=61.13 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+||||||++..||+ +|..+|++|.+
T Consensus 7 ~G~~GsGKSTl~~~L~~-~g~~~i~~d~~ 34 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFRE-LGAYVLDADKL 34 (204)
T ss_dssp EECTTSSHHHHHHHHHH-TTCEEEEHHHH
T ss_pred ECCCCcCHHHHHHHHHH-CCCEEEEccHH
Confidence 49999999999999999 99999999975
No 97
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.08 E-value=0.00054 Score=62.91 Aligned_cols=30 Identities=33% Similarity=0.345 Sum_probs=25.4
Q ss_pred CCCCcCchhHHHHHHHHHcC-------CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-------GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-------~eiIs~Ds~Q 30 (269)
+||+|||||||+..|+..++ ..+|+.|...
T Consensus 98 ~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 98 AGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp ECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred ECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 49999999999999998874 3578999865
No 98
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.08 E-value=0.00015 Score=60.47 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=27.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
.|++||||||+|..||+.+|.++++.|.+.
T Consensus 8 ~G~~GsGKst~~~~la~~lg~~~~d~d~~~ 37 (208)
T 3ake_A 8 DGPSASGKSSVARRVAAALGVPYLSSGLLY 37 (208)
T ss_dssp ECSTTSSHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCceeccchHH
Confidence 499999999999999999999999999753
No 99
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.05 E-value=0.00015 Score=60.83 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=26.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||.||||||++..||. +|..+|++|.+
T Consensus 8 ~G~~GsGKST~~~~La~-lg~~~id~d~~ 35 (206)
T 1jjv_A 8 TGGIGSGKTTIANLFTD-LGVPLVDADVV 35 (206)
T ss_dssp ECSTTSCHHHHHHHHHT-TTCCEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHH-CCCcccchHHH
Confidence 59999999999999998 89999999985
No 100
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.98 E-value=0.0027 Score=59.20 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=29.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHcCc---HHHHHhhcCC
Q 044048 115 CFIWMDVDPLVLYKYVGIRVDKMVETGL---VDEVRDMFDP 152 (269)
Q Consensus 115 ~~~~l~~~~e~L~~Ri~~Rv~~Ml~~Gl---l~Ev~~l~~~ 152 (269)
..+++++|.++..+|+.+|- ++.|+ .+|+...+..
T Consensus 291 ~~i~Vdad~ev~~~Rli~R~---~~~Gl~~s~eea~~r~~~ 328 (359)
T 2ga8_A 291 LVYKIDIDYEATEERVAKRH---LQSGLVTTIAEGREKFRS 328 (359)
T ss_dssp EEEEEECCHHHHHHHHHHHH---HHTTSCSSHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHhh---hccCCCCCHHHHHHHHHh
Confidence 67889999999999999997 56898 8888777653
No 101
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.90 E-value=4.8e-05 Score=63.87 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.9
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||+||||||++..|++.++.
T Consensus 6 ~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 6 EGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEHHHHHHHHHHHHHE
T ss_pred EcCCCCCHHHHHHHHHHHHHh
Confidence 499999999999999999853
No 102
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.84 E-value=0.00079 Score=59.62 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.4
Q ss_pred CCCCcCchhHHHHHHHHHc-------CCeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHF-------SGEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-------~~eiIs~Ds~QvYk~ 34 (269)
.||+|||||++|..+|+.+ +.+++.++.-.+...
T Consensus 73 ~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~ 113 (309)
T 3syl_A 73 TGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQ 113 (309)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCS
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhh
Confidence 4999999999999999987 336777766555443
No 103
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.81 E-value=0.0012 Score=64.57 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=59.6
Q ss_pred CCCCcCchhHHHHHHHHHcCC-----eeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHH---HH
Q 044048 1 MGATATGKTKLSIDLAIHFSG-----EAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFC---EH 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~-----eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~---~~ 72 (269)
+|+.||||||+|..|++.++. .+++.|.+. +.+ .....|+..+.. +.
T Consensus 378 ~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir--~~l-----------------------~~~~~f~~~er~~~l~~ 432 (546)
T 2gks_A 378 TGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR--THL-----------------------SRGLGFSKEDRITNILR 432 (546)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH--HHT-----------------------CTTCCSSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh--hhh-----------------------cccccccHHHHHHHHHH
Confidence 499999999999999998863 666666532 222 011134433322 22
Q ss_pred HHHHHHHHHhcCCceEEEcccHHHH---HHHHcchhhhhccccceEEEEEeCCHHHHHHHHH
Q 044048 73 ALRAIDKIIENGHLPIIVGGSNTYI---EALVEDSIINFRANYDCCFIWMDVDPLVLYKYVG 131 (269)
Q Consensus 73 a~~~i~~i~~~~~~pIivGGt~~Y~---~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~ 131 (269)
....+..+.+.|... |+.++..|- ..+.. +....++.+++|++|.+++.+|+.
T Consensus 433 i~~~~~~~l~~G~~V-I~d~~~~~~~~r~~~~~-----~l~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 433 VGFVASEIVKHNGVV-ICALVSPYRSARNQVRN-----MMEEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp HHHHHHHHHHTTCEE-EEECCCCCHHHHHHHHT-----TSCTTCEEEEEEECCGGGHHHHCC
T ss_pred HHHHHHHHHhCCCEE-EEEcCCCCHHHHHHHHH-----HhhcCCEEEEEEeCCHHHHHHHhh
Confidence 233455566777744 454554332 11111 111135688999999999999975
No 104
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.76 E-value=0.0031 Score=62.15 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=57.1
Q ss_pred CCCCcCchhHHHHHHHHHcC----C--eeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHH---H
Q 044048 1 MGATATGKTKLSIDLAIHFS----G--EAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFC---E 71 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~----~--eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~---~ 71 (269)
.|+.||||||+|..|++.++ . .++..|. +++++. .+..|+..+-. +
T Consensus 402 ~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~--ir~~l~-----------------------~~~~f~~~er~~~i~ 456 (573)
T 1m8p_A 402 TGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT--VRHELS-----------------------SELGFTREDRHTNIQ 456 (573)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH--HHHHTC-----------------------TTCCCSHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH--HHHHhc-----------------------cccCCChhHHHHHHH
Confidence 49999999999999999986 2 4555554 334321 11134433211 2
Q ss_pred HHHHHHHHHHhcCCceEEEcccHHH------HHHHHcchhhhhccccceEEEEEeCCHHHHHHHHH
Q 044048 72 HALRAIDKIIENGHLPIIVGGSNTY------IEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVG 131 (269)
Q Consensus 72 ~a~~~i~~i~~~~~~pIivGGt~~Y------~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~ 131 (269)
.....++.+.+.|.+ ||++....| +..++. ..-.++.+||++|.+++.+|..
T Consensus 457 ri~~v~~~~~~~g~~-VI~~~is~~~~~R~~~r~l~~-------~~g~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 457 RIAFVATELTRAGAA-VIAAPIAPYEESRKFARDAVS-------QAGSFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp HHHHHHHHHHHTTCE-EEEECCCCCHHHHHHHHHHHH-------TTSEEEEEEECCCHHHHHHHCS
T ss_pred HHHHHHHHHHhCCCE-EEEEcCCCcHHHHHHHHHHHH-------hcCCeEEEEEeCCHHHHHHHhc
Confidence 222355566666764 455444322 222221 1114688999999999999953
No 105
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.74 E-value=0.00029 Score=63.39 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=24.3
Q ss_pred CCCCcCchhHHHHHHHHHcC-----CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-----GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-----~eiIs~Ds~Q 30 (269)
.||+||||||+|..|++.++ ..+|++|++.
T Consensus 11 tG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 11 TGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp ESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 49999999999999999887 7899999965
No 106
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.67 E-value=0.0061 Score=53.20 Aligned_cols=29 Identities=24% Similarity=0.148 Sum_probs=24.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
.||+|||||+||..+|+.++.+++..+.-
T Consensus 70 ~G~~GtGKT~la~~ia~~~~~~~~~i~~~ 98 (272)
T 1d2n_A 70 EGPPHSGKTALAAKIAEESNFPFIKICSP 98 (272)
T ss_dssp ECSTTSSHHHHHHHHHHHHTCSEEEEECG
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEEeCH
Confidence 49999999999999999999887765543
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.67 E-value=0.00052 Score=57.58 Aligned_cols=29 Identities=34% Similarity=0.401 Sum_probs=26.5
Q ss_pred CCCCcCchhHHHHHHHHHcC--CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFS--GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~--~eiIs~Ds~ 29 (269)
+||+|||||||+..|+..++ ..+|+.|.+
T Consensus 12 ~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~ 42 (211)
T 3asz_A 12 AGGTASGKTTLAQALARTLGERVALLPMDHY 42 (211)
T ss_dssp EESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence 49999999999999999988 889998884
No 108
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.65 E-value=0.0023 Score=52.48 Aligned_cols=23 Identities=9% Similarity=-0.133 Sum_probs=19.7
Q ss_pred cceEEEEEeCCHHHHHHHHHHHH
Q 044048 112 YDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 112 ~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
.++.++++|-|-..|..+...|+
T Consensus 100 ~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 100 CFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp CEEEEEEECCCHHHHHHHHHTCS
T ss_pred CcEEEEEEeCCHHHHHHHHhccc
Confidence 56788999999999999988775
No 109
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.58 E-value=0.0026 Score=51.09 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|+..+|+.+
T Consensus 49 ~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 49 LGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp ESCGGGCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999987
No 110
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.56 E-value=0.001 Score=54.93 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAIN 25 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs 25 (269)
.|++||||||++..||+.++..++.
T Consensus 6 ~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 6 FGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp ECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred ECCCccCHHHHHHHHHHhcCCcEEc
Confidence 4999999999999999999986653
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.56 E-value=0.0047 Score=49.84 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=39.3
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAI 77 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i 77 (269)
+||+|||||+|+..++..+ |..++-.+.-. +... +-....+=-++|..+. .+... .+.....+
T Consensus 42 ~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~------~~~~----~~~~~~~lLilDE~~~---~~~~~-~~~l~~li 107 (149)
T 2kjq_A 42 WGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS------MPLT----DAAFEAEYLAVDQVEK---LGNEE-QALLFSIF 107 (149)
T ss_dssp ESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT------SCCC----GGGGGCSEEEEESTTC---CCSHH-HHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH------hhHH----HHHhCCCEEEEeCccc---cChHH-HHHHHHHH
Confidence 5999999999999999876 42222222111 1110 1122222235555433 33333 55666777
Q ss_pred HHHHhcCCc
Q 044048 78 DKIIENGHL 86 (269)
Q Consensus 78 ~~i~~~~~~ 86 (269)
+.+.++|+.
T Consensus 108 ~~~~~~g~~ 116 (149)
T 2kjq_A 108 NRFRNSGKG 116 (149)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHcCCc
Confidence 777777775
No 112
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.56 E-value=0.00068 Score=58.36 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=27.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+|+.||||||++..||+.+|.+++++|.+.
T Consensus 22 ~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 22 DGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp ECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 499999999999999999999999999854
No 113
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.55 E-value=0.0014 Score=56.02 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=31.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCcee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHL 54 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl 54 (269)
+||+|||||||...|+..++|. +.+ +.++.|..|...++.++.+..
T Consensus 29 vGpsGsGKSTLl~~L~g~~pG~------i~~--g~~~~~~~~~~~~~~~i~~~~ 74 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLNEFPNY------FYF--SVSCTTRKKREKEKEGVDYYF 74 (218)
T ss_dssp ECSTTSSHHHHHHHHHHHSTTT------EEE--CCCEECSCCCSSCCBTTTBEE
T ss_pred ECCCCCCHHHHHHHHHhhCCCc------EEE--eecccCCCCCcccccCCeEEE
Confidence 5999999999999999877422 222 566666666555556655543
No 114
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.0047 Score=49.39 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=17.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|+..+++.+
T Consensus 49 ~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 49 IGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999987
No 115
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.52 E-value=0.0022 Score=58.30 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=62.0
Q ss_pred CCCCcCchhHHHHHHHHHcC-------CeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFS-------GEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA 73 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-------~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a 73 (269)
+||+|||||||+..|+..+. ..+|+-|..- |.. . ..|. +. +....+....++... +
T Consensus 96 ~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~-~~~-t-------~~e~--~~--~~~~~g~~~~~d~~~----~ 158 (312)
T 3aez_A 96 AGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFL-YPN-A-------ELQR--RN--LMHRKGFPESYNRRA----L 158 (312)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGB-CCH-H-------HHHH--TT--CTTCTTSGGGBCHHH----H
T ss_pred ECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccC-Ccc-c-------HHHH--HH--HHHhcCCChHHHHHH----H
Confidence 59999999999999998663 2466666542 111 1 1111 11 111112222344333 3
Q ss_pred HHHHHHHHhc---CCceEEEcccHHHH---HHHHc--------chhh-------hhccccceEEEEEeCCHHHHHHHHHH
Q 044048 74 LRAIDKIIEN---GHLPIIVGGSNTYI---EALVE--------DSII-------NFRANYDCCFIWMDVDPLVLYKYVGI 132 (269)
Q Consensus 74 ~~~i~~i~~~---~~~pIivGGt~~Y~---~~ll~--------g~~~-------~~~~~~~~~~~~l~~~~e~L~~Ri~~ 132 (269)
.+.++.+... ..+|.+.||..--+ .+++. |+.. .+...++ ..++++++.+...+|+.+
T Consensus 159 ~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D-~~I~V~a~~~~~~~R~i~ 237 (312)
T 3aez_A 159 MRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFD-FSLYVDARIEDIEQWYVS 237 (312)
T ss_dssp HHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCS-EEEEEEECHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcC-cEEEEECCHHHHHHHHHH
Confidence 3444444311 24677778863211 11121 1110 1122244 458899999999999888
Q ss_pred HHHHH
Q 044048 133 RVDKM 137 (269)
Q Consensus 133 Rv~~M 137 (269)
|.-.|
T Consensus 238 R~~~~ 242 (312)
T 3aez_A 238 RFLAM 242 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87554
No 116
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.51 E-value=0.0032 Score=61.76 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=46.4
Q ss_pred CCCCcCchhHHHHHHHHHcC----Cee--eeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHH---HHH
Q 044048 1 MGATATGKTKLSIDLAIHFS----GEA--INSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEE---FCE 71 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~----~ei--Is~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~---f~~ 71 (269)
+|++|||||||+..||..++ +.+ +..|.+. .++ . ..-.|+..+ +.+
T Consensus 375 iG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~--~~l------------~-----------~~l~f~~~~r~~~~r 429 (552)
T 3cr8_A 375 TGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR--RHL------------S-----------SELGFSKAHRDVNVR 429 (552)
T ss_dssp EESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH--HHT------------T-----------SSCCCSHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH--Hhh------------c-----------cccCCCHHHHHHHHH
Confidence 59999999999999999985 233 4444432 111 0 001234322 222
Q ss_pred HHHHHHHHHHhcCCceEEEcccH-H----HHHHHHcchhhhhccccceEEEEEeCCHHHHHHHHH
Q 044048 72 HALRAIDKIIENGHLPIIVGGSN-T----YIEALVEDSIINFRANYDCCFIWMDVDPLVLYKYVG 131 (269)
Q Consensus 72 ~a~~~i~~i~~~~~~pIivGGt~-~----Y~~~ll~g~~~~~~~~~~~~~~~l~~~~e~L~~Ri~ 131 (269)
......+++...+.+.|..+|.. . ..+.++. ..-++..+||+++.+++.+|+.
T Consensus 430 ~i~~v~q~l~~~~~ivi~~~~~~~~~~r~~~r~lL~-------~~g~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 430 RIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIE-------AVGGFVEIHVATPIETCESRDR 487 (552)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHH-------TTSEEEEEEECC----------
T ss_pred HHHHHHHHHHhcCCEEEEecCCccHHHHHHHHHHHH-------HcCCEEEEEEcCCHHHHHHhcc
Confidence 22334445555666555555431 1 1122222 1115788999999999999964
No 117
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.51 E-value=0.006 Score=54.95 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=26.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
.||+|||||+||..+|..++..++.++.-.+
T Consensus 57 ~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 57 YGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp ECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred ECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 4999999999999999999999887765443
No 118
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.48 E-value=0.0012 Score=57.31 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=27.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCe----------eeeCCccceecCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGE----------AINSDKIQVYKGLD 36 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e----------iIs~Ds~QvYk~l~ 36 (269)
+||+|||||||+..|+..+|.. +|+.|. +|+.+.
T Consensus 31 ~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~--~~~~l~ 74 (245)
T 2jeo_A 31 SGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR--FYKVLT 74 (245)
T ss_dssp ECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG--GBCCCC
T ss_pred ECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc--CccccC
Confidence 4999999999999999988754 577774 676653
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.47 E-value=0.00072 Score=58.48 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=26.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+|||||||+..||+.+|...++.|.+.
T Consensus 33 ~G~~GsGKSTl~k~La~~lg~~~~~~G~i~ 62 (246)
T 2bbw_A 33 LGPPGSGKGTVCQRIAQNFGLQHLSSGHFL 62 (246)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCCCEEHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEecHHHHH
Confidence 599999999999999999998888877654
No 120
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.45 E-value=0.0019 Score=54.44 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=28.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHH 53 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hh 53 (269)
+||+|||||||...|+..+.. ++-..++.+.+|...++.++.++
T Consensus 26 ~GpnGsGKSTLl~~l~gl~~~---------i~~~~~~~~~~~~~~~~~~i~~~ 69 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLRERIPN---------LHFSVSATTRAPRPGEVDGVDYH 69 (207)
T ss_dssp ECSTTSSHHHHHHHHHHHSTT---------CEECCCEESSCCCTTCCBTTTBE
T ss_pred ECCCCCCHHHHHHHHHhhCCc---------eEEcccccccCCcccccCCCeeE
Confidence 599999999999999988751 11223555655654444444444
No 121
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.44 E-value=0.0035 Score=53.95 Aligned_cols=21 Identities=29% Similarity=0.293 Sum_probs=18.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHH
Q 044048 113 DCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 113 ~~~~~~l~~~~e~L~~Ri~~R 133 (269)
+-++++|++|.++..+|+.+|
T Consensus 133 PDl~i~Ldv~~e~~~~Ri~~R 153 (213)
T 4tmk_A 133 PDLTLYLDVTPEVGLKRARAR 153 (213)
T ss_dssp CSEEEEEECCHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHhc
Confidence 457899999999999999888
No 122
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.35 E-value=0.00017 Score=62.93 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=15.9
Q ss_pred CCCcCchhHHHHHHHHHcCCe
Q 044048 2 GATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~e 22 (269)
||.||||||++..|++.++..
T Consensus 32 G~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 32 GIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCC---CHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998543
No 123
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.33 E-value=0.0012 Score=59.01 Aligned_cols=31 Identities=13% Similarity=0.028 Sum_probs=26.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
.||+|||||+||..+|+.++.+++.++.-++
T Consensus 42 ~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 42 WGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp EECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 3999999999999999999998887775444
No 124
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.32 E-value=0.0016 Score=57.10 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=15.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHH
Q 044048 113 DCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 113 ~~~~~~l~~~~e~L~~Ri~~R 133 (269)
+-.+|+|++|++++.+|+.+|
T Consensus 155 PDlvi~Ldv~~e~~~~Ri~~R 175 (236)
T 3lv8_A 155 PDLTLYLDIDPKLGLERARGR 175 (236)
T ss_dssp CSEEEEEECCHHHHHHC----
T ss_pred CCEEEEEeCCHHHHHHHHHhc
Confidence 458899999999999999888
No 125
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.28 E-value=0.002 Score=55.82 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=26.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
+||+|||||+|+..+|..++.+++.++.-.+
T Consensus 51 ~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 51 VGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp ECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred ECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 4999999999999999999988777765443
No 126
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.24 E-value=0.00076 Score=58.05 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=18.4
Q ss_pred CCCcCchhHHHHHHHHHcCC
Q 044048 2 GATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~ 21 (269)
||.||||||++..|++.++.
T Consensus 13 G~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 13 GPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CSTTSSHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999853
No 127
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.21 E-value=0.0047 Score=58.89 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=21.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINS 26 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~ 26 (269)
+|.+|||||+++..||+.++...+++
T Consensus 45 vGlpGsGKSTia~~La~~l~~~~~~t 70 (469)
T 1bif_A 45 VGLPARGKTYISKKLTRYLNFIGVPT 70 (469)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ECCCCCCHHHHHHHHHHHHhccCCCc
Confidence 59999999999999999986443333
No 128
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.20 E-value=0.0015 Score=53.59 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=22.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCe--eeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGE--AINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e--iIs~Ds~ 29 (269)
+||+|||||||+..||..++.. .++.|.+
T Consensus 15 ~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 15 SGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred ECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 5999999999999999986544 4555543
No 129
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.19 E-value=0.0014 Score=54.30 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCCCcCchhHHHHHHHHHc-CCeeeeC
Q 044048 1 MGATATGKTKLSIDLAIHF-SGEAINS 26 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-~~eiIs~ 26 (269)
.||.||||||++..||+.+ |.+++..
T Consensus 10 ~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp ECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred EcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 4999999999999999999 4566664
No 130
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.18 E-value=0.0021 Score=55.77 Aligned_cols=30 Identities=23% Similarity=0.156 Sum_probs=25.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
.||+|||||+||..+|+.++.+++.++.-.
T Consensus 50 ~G~~GtGKT~la~~la~~~~~~~~~v~~~~ 79 (268)
T 2r62_A 50 VGPPGTGKTLLAKAVAGEAHVPFFSMGGSS 79 (268)
T ss_dssp BCSSCSSHHHHHHHHHHHHTCCCCCCCSCT
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEechHH
Confidence 499999999999999999998877766443
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.17 E-value=0.003 Score=55.25 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=27.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceec
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk 33 (269)
.||+|||||+||..+|+.++..++.++.-.+..
T Consensus 57 ~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 57 YGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp ESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 499999999999999999999887766555443
No 132
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.12 E-value=0.0021 Score=58.87 Aligned_cols=30 Identities=30% Similarity=0.302 Sum_probs=26.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
.||||||||++|..||+.++.+++.++...
T Consensus 57 ~GppGtGKT~la~~ia~~~~~~~~~~~~~~ 86 (363)
T 3hws_A 57 IGPTGSGKTLLAETLARLLDVPFTMADATT 86 (363)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEEechHH
Confidence 499999999999999999999988877654
No 133
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.11 E-value=0.0052 Score=51.49 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=18.1
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.||+|||||+|+..+|+.++
T Consensus 58 ~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 58 WGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp ECSTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 49999999999999998764
No 134
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.11 E-value=0.0022 Score=55.16 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=24.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
.||+|||||++|..+|+.++.+++.++.-
T Consensus 45 ~G~~GtGKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 45 LGPPGCGKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp ESCTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEechH
Confidence 49999999999999999999887665543
No 135
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.09 E-value=0.0024 Score=58.66 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=26.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
+||+|||||++|..+|+.++.+++.+|...+
T Consensus 78 ~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 108 (376)
T 1um8_A 78 IGPTGSGKTLMAQTLAKHLDIPIAISDATSL 108 (376)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEecchhh
Confidence 4999999999999999999988887765543
No 136
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.08 E-value=0.022 Score=51.36 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHH--------
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEH-------- 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~-------- 72 (269)
+|| ||++|...|.+.++.. +..-.+.+|.+|.+.|..|+.||++. |..+|.++
T Consensus 111 ~GP---gK~tl~~~L~~~~~~~--------~~~~vs~TTR~~R~gE~~G~dY~Fv~--------s~eef~~~i~~g~flE 171 (295)
T 1kjw_A 111 LGP---TKDRANDDLLSEFPDK--------FGSCVPHTTRPKREYEIDGRDYHFVS--------SREKMEKDIQAHKFIE 171 (295)
T ss_dssp EST---THHHHHHHHHHHCTTT--------EECCCCEECSCCCTTCCBTTTBEECS--------CHHHHHHHHHTTCEEE
T ss_pred ECC---CHHHHHHHHHhhCccc--------eeeeeeecccCCCCccccCceeEecC--------CHHHHHHHHHCCCcEE
Confidence 366 8999999999887521 22345679999999999999999871 34455544
Q ss_pred -----------HHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCC-HHHHHHHHHHH
Q 044048 73 -----------ALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVD-PLVLYKYVGIR 133 (269)
Q Consensus 73 -----------a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~-~e~L~~Ri~~R 133 (269)
..+.|+++.+.|+.+|+... .-.++.+-. ...++ ++|+|.+| .++|.+ |..|
T Consensus 172 ~~~~~g~~YGt~~~~V~~~~~~G~~vildid-~~g~~~l~~------~~~~p-i~IfI~pps~~~L~~-L~~R 235 (295)
T 1kjw_A 172 AGQYNSHLYGTSVQSVREVAEQGKHCILDVS-ANAVRRLQA------AHLHP-IAIFIRPRSLENVLE-INKR 235 (295)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEECCC-TTHHHHHHH------TTCCC-EEEEECCSSHHHHHH-HCTT
T ss_pred EEEEcCcEeeeeHHHHHHHHhcCCeEEEEeC-HHHHHHHHh------cccCC-eEEEEECCCHHHHHH-HHhc
Confidence 34567788889998777643 222322221 11233 67777765 778877 6555
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.04 E-value=0.0029 Score=56.54 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=26.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
.||+|||||+||..+|..++..++.++.-.+
T Consensus 55 ~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 55 YGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp ECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred ECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 4999999999999999999999888775443
No 138
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.02 E-value=0.007 Score=51.58 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=17.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHH
Q 044048 113 DCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 113 ~~~~~~l~~~~e~L~~Ri~~R 133 (269)
+-++|+|++|+++..+|+.+|
T Consensus 125 PDl~i~Ld~~~e~~~~Ri~~r 145 (205)
T 4hlc_A 125 PDLTIYLNVSAEVGRERIIKN 145 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHC-
T ss_pred CCEEeeeCCCHHHHHHHHHhc
Confidence 447899999999999999777
No 139
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.96 E-value=0.003 Score=55.62 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=24.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
.||+|||||++|..+|+.++.+++.++.
T Consensus 60 ~Gp~GtGKT~la~~la~~~~~~~~~i~~ 87 (297)
T 3b9p_A 60 FGPPGNGKTLLARAVATECSATFLNISA 87 (297)
T ss_dssp ESSSSSCHHHHHHHHHHHTTCEEEEEES
T ss_pred ECcCCCCHHHHHHHHHHHhCCCeEEeeH
Confidence 4999999999999999999988766544
No 140
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.95 E-value=0.003 Score=55.49 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=25.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
.||+|||||++|..+|+.++.+++.+|.-.+
T Consensus 56 ~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 56 IGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp ECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 4999999999999999999988776655443
No 141
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.94 E-value=0.025 Score=56.91 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=22.9
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~Ds 28 (269)
+||||||||.+|..||+.+ +.++|.+|-
T Consensus 527 ~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~ 557 (758)
T 3pxi_A 527 LGPTGVGKTELARALAESIFGDEESMIRIDM 557 (758)
T ss_dssp ESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCcceEEEec
Confidence 4999999999999999997 455666554
No 142
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0037 Score=59.54 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=28.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcccee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVY 32 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvY 32 (269)
.||+|||||.||.++|..++..+++++.-.+.
T Consensus 212 ~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 212 YGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 49999999999999999999999988775543
No 143
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.83 E-value=0.004 Score=53.96 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=25.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
.||+|||||++|..||+.+.+.|++.+.
T Consensus 64 ~GPPGtGKTt~a~ala~~l~g~i~~fan 91 (212)
T 1tue_A 64 CGPANTGKSYFGMSFIHFIQGAVISFVN 91 (212)
T ss_dssp ESCGGGCHHHHHHHHHHHHTCEECCCCC
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeeeEEe
Confidence 4999999999999999999999887654
No 144
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.004 Score=58.89 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=27.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcccee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVY 32 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvY 32 (269)
.||+|||||.||.++|..++..+++++.-.+.
T Consensus 188 ~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 188 YGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred eCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 49999999999999999999999887765443
No 145
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.0043 Score=59.15 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=27.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcccee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVY 32 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvY 32 (269)
.||+|||||.||.++|..++..+++++.-.+.
T Consensus 221 yGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 221 YGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred ECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 49999999999999999999998887765543
No 146
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.0042 Score=59.33 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=27.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
.||+|||||.||.++|..++..+++++.-.+
T Consensus 221 ~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 221 YGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp ESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence 4999999999999999999999888765443
No 147
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.68 E-value=0.0043 Score=53.51 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=25.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+|||||+|+..+|..++...|.++...
T Consensus 55 ~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 55 VGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 499999999999999999887777666543
No 148
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.61 E-value=0.0052 Score=58.30 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=28.8
Q ss_pred CCCCcCchhHHHHHHHHHcC--CeeeeCCccceec
Q 044048 1 MGATATGKTKLSIDLAIHFS--GEAINSDKIQVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~--~eiIs~Ds~QvYk 33 (269)
.||+|||||+||..+|+.++ ..++.++.-.++.
T Consensus 69 ~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 69 AGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp ECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 49999999999999999998 7888888776664
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.56 E-value=0.0056 Score=54.31 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=25.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+|||||+|+..||..++...|.++.-.
T Consensus 50 ~Gp~GtGKTtLakala~~~~~~~i~i~g~~ 79 (274)
T 2x8a_A 50 AGPPGCGKTLLAKAVANESGLNFISVKGPE 79 (274)
T ss_dssp ESSTTSCHHHHHHHHHHHTTCEEEEEETTT
T ss_pred ECCCCCcHHHHHHHHHHHcCCCEEEEEcHH
Confidence 499999999999999999988777665433
No 150
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.52 E-value=0.0057 Score=49.95 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=17.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|+..++..+
T Consensus 44 ~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 44 VGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCSSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999999876
No 151
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.0065 Score=58.47 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=28.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcccee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVY 32 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvY 32 (269)
.||+|||||.||.++|..++..+++++.-.+.
T Consensus 249 yGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 249 YGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp CSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred eCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 59999999999999999999999887765543
No 152
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.52 E-value=0.0052 Score=58.80 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=26.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+|||||++|..||+.++..++.+|.-.
T Consensus 56 ~GppGtGKT~lar~lA~~l~~~~~~v~~~~ 85 (444)
T 1g41_A 56 IGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (444)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred EcCCCCCHHHHHHHHHHHcCCCceeecchh
Confidence 499999999999999999999988887633
No 153
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.50 E-value=0.0032 Score=53.23 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=33.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCc--cccCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLD--IATNK 41 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~--I~Tak 41 (269)
.|++|+|||+||.+|.++ |..+|+=|...+++.-+ ++++.
T Consensus 22 ~G~SGaGKStlal~L~~r-G~~lvaDD~v~i~~~~~~l~g~~p 63 (181)
T 3tqf_A 22 TGEANIGKSELSLALIDR-GHQLVCDDVIDLKQENNQLIGSCP 63 (181)
T ss_dssp EESSSSSHHHHHHHHHHT-TCEEEESSEEEEEESSSCEEEECC
T ss_pred EcCCCCCHHHHHHHHHHc-CCeEecCCEEEEEEeCCEEEEeCc
Confidence 489999999999999986 89999999999998544 55543
No 154
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.48 E-value=0.0045 Score=49.20 Aligned_cols=19 Identities=26% Similarity=0.146 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||.+|..++...
T Consensus 30 ~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 30 YGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp ESSTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 4999999999999999875
No 155
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.48 E-value=0.0057 Score=54.85 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~D 27 (269)
.||+|||||+||..+|+.++.+++.++
T Consensus 61 ~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 61 SGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp ECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred ECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 499999999999999999988766544
No 156
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.45 E-value=0.0056 Score=56.25 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=27.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcccee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVY 32 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvY 32 (269)
.||+|||||+||..+|..++..++.++.-.+.
T Consensus 90 ~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 90 YGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 49999999999999999999998877655443
No 157
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.43 E-value=0.007 Score=55.97 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=26.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
.||+|+|||+||..+|..++..++.++.-.+
T Consensus 154 ~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 154 FGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp ESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred ECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 4999999999999999999999887766443
No 158
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.40 E-value=0.0079 Score=55.15 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=25.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
.||+|||||+||..+|+.++..++.++.-.
T Consensus 123 ~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 123 FGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp ESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 499999999999999999998877665543
No 159
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.0072 Score=57.67 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=28.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceec
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk 33 (269)
.||+|||||.||.++|..++..+++++.-.+..
T Consensus 222 yGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 222 YGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp ESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred ECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 499999999999999999999998887655443
No 160
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.34 E-value=0.0061 Score=54.83 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=24.6
Q ss_pred CCCCcCchhHHHHHHHHHcC-------Ceee-eCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFS-------GEAI-NSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-------~eiI-s~Ds~Q 30 (269)
+||+|||||||+..|+..++ ..+| +.|++-
T Consensus 37 ~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 37 SGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred ECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 59999999999999998875 2344 999964
No 161
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.33 E-value=0.0076 Score=58.12 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=26.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
.||+|+|||++|..+|+.++.+++..+.-.
T Consensus 83 ~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 83 YGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp ECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 499999999999999999999888776544
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.28 E-value=0.0085 Score=54.24 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCCCcCchhHHHHHHHHHc-CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF-SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-~~eiIs~Ds 28 (269)
.||+|||||+||..+|..+ +..+++++.
T Consensus 51 ~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 51 FGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp ESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred ECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 4999999999999999998 666665544
No 163
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.28 E-value=0.0071 Score=53.10 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=24.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~ 29 (269)
+||+|||||+|+..||..++...|.++..
T Consensus 79 ~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~ 107 (278)
T 1iy2_A 79 VGPPGVGKTHLARAVAGEARVPFITASGS 107 (278)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ECCCcChHHHHHHHHHHHcCCCEEEecHH
Confidence 59999999999999999988777766543
No 164
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.22 E-value=0.014 Score=55.74 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCCCcCchhHHHHHHHHHc----------CCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF----------SGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----------~~eiIs~Ds~ 29 (269)
+||+|+|||+++..||+.+ +.+++..|.-
T Consensus 207 ~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 207 IGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp ESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 4999999999999999997 5666666654
No 165
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.13 E-value=0.0083 Score=50.23 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=22.5
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeee--eCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAI--NSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiI--s~Ds~ 29 (269)
+||+|||||||+..|+..+ ++.|+ +.|..
T Consensus 28 ~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 4999999999999999875 56554 44653
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.11 E-value=0.0085 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
.||+|||||+||..+++.++.+++
T Consensus 44 ~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 44 FGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp ECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEE
Confidence 499999999999999999987654
No 167
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.97 E-value=0.0076 Score=53.13 Aligned_cols=19 Identities=42% Similarity=0.641 Sum_probs=17.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||++|..+|+.+
T Consensus 53 ~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 53 LGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp ESCSSSSHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHH
Confidence 4999999999999999987
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.84 E-value=0.012 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiI 24 (269)
+||+|+|||+|+..+|..++..+.
T Consensus 57 ~Gp~G~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 57 AGPPGLGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp ESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEE
Confidence 499999999999999999987543
No 169
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.82 E-value=0.013 Score=48.53 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=17.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+|+..++..+
T Consensus 60 ~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 60 HGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999876
No 170
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.79 E-value=0.011 Score=52.80 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=59.9
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCCccceecCCccccCCCCHhh----hcCCCceecccCCCCCCCCH-HHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSDKIQVYKGLDIATNKVTESE----RQGVPHHLLGFVDPEADYPV-EEFCEH 72 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~Ds~QvYk~l~I~Takpt~~e----~~~v~hhl~~~~~~~~~~~~-~~f~~~ 72 (269)
.||+|||||+|+..++..+ +..++.++.-.+...+.-....-.... .....--++|.++. ++. ......
T Consensus 43 ~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~---l~~~~~~~~~ 119 (324)
T 1l8q_A 43 YGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQF---LSGKERTQIE 119 (324)
T ss_dssp ECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGG---GTTCHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCccc---ccCChHHHHH
Confidence 4999999999999999987 666555443332221100000000111 11112234554432 221 123445
Q ss_pred HHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccce-EEEEEeCCHHHHHHHHHHHH
Q 044048 73 ALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDC-CFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 73 a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~-~~~~l~~~~e~L~~Ri~~Rv 134 (269)
....++.....++ +|+++++...-. +...+..+..++.. ..+.+.++.+.+.+-+..++
T Consensus 120 l~~~l~~~~~~~~-~iii~~~~~~~~--l~~l~~~L~sR~~~~~~i~l~~~~~e~~~il~~~~ 179 (324)
T 1l8q_A 120 FFHIFNTLYLLEK-QIILASDRHPQK--LDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKL 179 (324)
T ss_dssp HHHHHHHHHHTTC-EEEEEESSCGGG--CTTSCHHHHHHHHTSEEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-eEEEEecCChHH--HHHhhhHhhhcccCceEEEeCCCHHHHHHHHHHHH
Confidence 5556666666666 566766632110 01111222233322 34455555555555555554
No 171
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.72 E-value=0.0043 Score=49.27 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=21.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
.||+|||||.+|..++...+ +++.+|.
T Consensus 33 ~G~~GtGKt~lA~~i~~~~~-~~~~~~~ 59 (143)
T 3co5_A 33 TGEAGSPFETVARYFHKNGT-PWVSPAR 59 (143)
T ss_dssp EEETTCCHHHHHGGGCCTTS-CEECCSS
T ss_pred ECCCCccHHHHHHHHHHhCC-CeEEech
Confidence 49999999999999998876 5555443
No 172
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.71 E-value=0.014 Score=52.13 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=24.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
.||+|+|||+++..+|+.++.+++..+.
T Consensus 54 ~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 54 SPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp CSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred eCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 3889999999999999999988776653
No 173
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.71 E-value=0.014 Score=55.22 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=24.5
Q ss_pred CCCCcCchhHHHHHHHHHc-CCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHF-SGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-~~eiIs~Ds~Q 30 (269)
.||+|||||+||..+|..+ +..+++++.-.
T Consensus 173 ~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 173 FGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp ECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred ECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 4999999999999999999 77776665443
No 174
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.69 E-value=0.015 Score=54.30 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINS 26 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~ 26 (269)
+||+|||||||+..|+..+++.++++
T Consensus 175 ~G~~GsGKSTl~~~l~~~~~g~~~~~ 200 (377)
T 1svm_A 175 KGPIDSGKTTLAAALLELCGGKALNV 200 (377)
T ss_dssp ECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred ECCCCCCHHHHHHHHHhhcCCcEEEE
Confidence 49999999999999999999988774
No 175
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.65 E-value=0.084 Score=53.94 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCCCcCchhHHHHHHHHHc----------CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF----------SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----------~~eiIs~Ds 28 (269)
+||+|||||+++..+|+.+ +..++..|-
T Consensus 197 ~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 197 IGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp EECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred EcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 4999999999999999987 677777664
No 176
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.59 E-value=0.014 Score=52.45 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=22.4
Q ss_pred CCCCcCchhHHHHHHHHHc---------CCeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHF---------SGEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---------~~eiIs~D 27 (269)
.||+|+|||+|+..+++.+ +..++.++
T Consensus 50 ~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 5999999999999999987 66665444
No 177
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=94.59 E-value=0.018 Score=57.95 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=71.0
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceec-ccCCCCCCCCHH----------HH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLL-GFVDPEADYPVE----------EF 69 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~-~~~~~~~~~~~~----------~f 69 (269)
+|| ||++|...|.+.++.. +..-.+.+|.+|.+.|..|+.||++ +.-........+ .|
T Consensus 537 ~GP---~K~tl~~~L~~~~~~~--------~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~ 605 (721)
T 2xkx_A 537 LGP---TKDRANDDLLSEFPDK--------FGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHL 605 (721)
T ss_pred ECC---CHHHHHHHHHHhCccc--------eeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCcc
Confidence 367 5999999999887521 1123567899999999999999998 322111111111 12
Q ss_pred HHHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCC-HHHHHHHHHHHH
Q 044048 70 CEHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVD-PLVLYKYVGIRV 134 (269)
Q Consensus 70 ~~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~-~e~L~~Ri~~Rv 134 (269)
+=--.+.|++++++|+.+|+.. +.-.++.+-. ...++ ++||+.++ .++|.+ |..|-
T Consensus 606 YGt~~~~v~~~~~~g~~~ildi-~~~~~~~l~~------~~~~p-~~ifi~pps~~~L~~-l~~R~ 662 (721)
T 2xkx_A 606 YGTSVQSVREVAEQGKHCILDV-SANAVRRLQA------AHLHP-IAIFIRPRSLENVLE-INKRI 662 (721)
T ss_pred ceeeHHHHHHHHHCCCcEEEeC-CHHHHHHHHh------cccCC-EEEEEeCCcHHHHHH-HhccC
Confidence 2224566888889999888875 3333433332 12234 67777754 678877 66663
No 178
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.55 E-value=0.011 Score=52.92 Aligned_cols=25 Identities=20% Similarity=0.034 Sum_probs=21.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAIN 25 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs 25 (269)
.||+|+|||+||..+|+.++.+++.
T Consensus 52 ~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 52 EGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp ESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred ECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 4999999999999999999876543
No 179
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.55 E-value=0.013 Score=52.95 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.0
Q ss_pred CCCCcCchhHHHHHHHHHcCC--eeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG--EAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~--eiIs~D 27 (269)
.||+|+|||++|..+|+.++. +.+...
T Consensus 76 ~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 76 AGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp EESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 499999999999999999875 444443
No 180
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.37 E-value=0.019 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAIN 25 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs 25 (269)
+||+|||||||..-|+.-+.|.|+.
T Consensus 132 vGpsGsGKSTLl~lL~gl~~G~I~~ 156 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLIHFLGGSVLS 156 (305)
T ss_dssp ECSSSSSHHHHHHHHHHHHTCEEEC
T ss_pred ECCCCCcHHHHHHHHhhhcCceEEE
Confidence 5999999999999999988888864
No 181
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.36 E-value=0.017 Score=54.92 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~D 27 (269)
.||+|||||+||..+|+.++.+++.+.
T Consensus 56 ~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 56 WGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp ECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred ECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 499999999999999999988766544
No 182
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.33 E-value=0.021 Score=55.48 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=19.7
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+|+.||||||+|..||++++.
T Consensus 401 ~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 401 GNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CTTCCSCHHHHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHH
Confidence 599999999999999999985
No 183
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.23 E-value=0.017 Score=49.96 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=18.2
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.||+|||||.+|..++...+
T Consensus 35 ~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 35 IGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ECCTTSCHHHHHHHHHHTST
T ss_pred ECCCCCcHHHHHHHHHHhcC
Confidence 49999999999999999874
No 184
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.22 E-value=0.018 Score=55.44 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=25.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+|||||+||..+|...+.+++.++.-.
T Consensus 55 ~GppGtGKT~Laraia~~~~~~f~~is~~~ 84 (476)
T 2ce7_A 55 VGPPGTGKTLLARAVAGEANVPFFHISGSD 84 (476)
T ss_dssp ECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred ECCCCCCHHHHHHHHHHHcCCCeeeCCHHH
Confidence 499999999999999999998877665433
No 185
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.18 E-value=0.017 Score=47.16 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=17.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|+|||+|+..+++.+
T Consensus 44 ~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 44 SGPPGTGKTATAIALARDL 62 (226)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999986
No 186
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.00 E-value=0.02 Score=48.34 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=17.4
Q ss_pred CCCcCchhHHHHHHHHHcC
Q 044048 2 GATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~ 20 (269)
|+-||||||.+..|++.+.
T Consensus 7 G~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp CSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999873
No 187
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.95 E-value=0.025 Score=54.49 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=26.5
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
.||+|||||.+|..+|..++.+++.++.-.+
T Consensus 244 ~GppGtGKT~lAraia~~~~~~fv~vn~~~l 274 (489)
T 3hu3_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (489)
T ss_dssp ECSTTSSHHHHHHHHHHHCSSEEEEEEHHHH
T ss_pred ECcCCCCHHHHHHHHHHHhCCCEEEEEchHh
Confidence 4999999999999999999998887665443
No 188
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.93 E-value=0.024 Score=47.03 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=17.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
+||+|||||+|+..+|...+..
T Consensus 26 ~G~~GsGKTtl~~~l~~~~~~~ 47 (220)
T 2cvh_A 26 YGPYASGKTTLALQTGLLSGKK 47 (220)
T ss_dssp ECSTTSSHHHHHHHHHHHHCSE
T ss_pred ECCCCCCHHHHHHHHHHHcCCc
Confidence 4999999999999999833333
No 189
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.92 E-value=0.02 Score=51.74 Aligned_cols=29 Identities=24% Similarity=0.150 Sum_probs=23.9
Q ss_pred CCCCcCchhHHHHHHHHHc-----------CCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF-----------SGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----------~~eiIs~Ds~ 29 (269)
.||+|+|||+|+..+++.+ +..++.++..
T Consensus 51 ~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 51 LGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp EECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 4999999999999999987 7777666543
No 190
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.86 E-value=0.024 Score=54.84 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=25.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+|||||+|+..+|...+..+|.++.-.
T Consensus 70 ~GppGtGKTtLaraIa~~~~~~~i~i~g~~ 99 (499)
T 2dhr_A 70 VGPPGVGKTHLARAVAGEARVPFITASGSD 99 (499)
T ss_dssp ECSSSSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEehhH
Confidence 499999999999999999988877766544
No 191
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.80 E-value=0.023 Score=56.98 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
+||||||||.+|..||+.++..+|..|-
T Consensus 494 ~G~~GtGKT~la~~la~~l~~~~~~i~~ 521 (758)
T 1r6b_X 494 AGPTGVGKTEVTVQLSKALGIELLRFDM 521 (758)
T ss_dssp ECSTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred ECCCCCcHHHHHHHHHHHhcCCEEEEec
Confidence 4999999999999999999888776664
No 192
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.75 E-value=0.021 Score=47.35 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=18.6
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|||||||...|+..++
T Consensus 6 ~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHHG
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 59999999999999999886
No 193
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.72 E-value=0.023 Score=46.74 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.8
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||+|+|||+|+..+++.++.
T Consensus 51 ~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 51 SGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp ECSTTSCHHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHHHhcC
Confidence 499999999999999998754
No 194
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.71 E-value=0.023 Score=50.91 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=23.1
Q ss_pred CCCCcCchhHHHHHHHHHc------CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF------SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~------~~eiIs~Ds 28 (269)
.||+|+|||+|+..+++.+ +..++.++.
T Consensus 51 ~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 51 YGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp EECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 4999999999999999987 666665553
No 195
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.62 E-value=0.024 Score=50.02 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||||||||||...|+..+
T Consensus 31 ~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp ECSTTCSHHHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHHhC
Confidence 5999999999999988754
No 196
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=93.53 E-value=0.35 Score=43.50 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=68.8
Q ss_pred cCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHH-----------
Q 044048 5 ATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHA----------- 73 (269)
Q Consensus 5 gsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a----------- 73 (269)
|.||++|...|.+.++..+ ..-.+-+|-+|.+.|..|+.+|+++ +...|.++.
T Consensus 107 Gp~K~tl~~~Ll~~~p~~f--------~~sVs~TTR~pR~gE~dG~dY~Fv~--------s~e~fe~~i~~~~flE~a~~ 170 (292)
T 3tvt_A 107 GPLKDRINDDLISEYPDKF--------GSCVPHTTRPKREYEVDGRDYHFVS--------SREQMERDIQNHLFIEAGQY 170 (292)
T ss_dssp STTHHHHHHHHHHHCTTTE--------ECCCCEECSCCCTTCCBTTTBEECS--------CHHHHHHHHHTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHhChhhc--------cccccCCccCCcCCccCCccccccC--------CHHHHHHHHhcCceEEEEEE
Confidence 4479999999999886532 1345678999999999999999873 223344332
Q ss_pred --------HHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCC-HHHHHHHHHHH
Q 044048 74 --------LRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVD-PLVLYKYVGIR 133 (269)
Q Consensus 74 --------~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~-~e~L~~Ri~~R 133 (269)
.+.|++++++|+.+|+.--. -=++.|-. ....+++|||.|| .++|.+|+..|
T Consensus 171 ~gn~YGT~~~~V~~~~~~gk~viLdid~-qg~~~lk~-------~~~~pi~IFI~PpS~e~L~~r~~~r 231 (292)
T 3tvt_A 171 NDNLYGTSVASVREVAEKGKHCILDVSG-NAIKRLQV-------AQLYPVAVFIKPKSVDSVMEMNRRM 231 (292)
T ss_dssp TTEEEEEEHHHHHHHHHHTCEEEECCCT-HHHHHHHH-------TTCCCEEEEECCSCHHHHHHTCTTS
T ss_pred ccceeEEehHHHHHHHHcCCcEEEeccc-hhhhhccc-------ccccceEEEEECCCHHHHHHHHhCC
Confidence 45677888899988775221 11111211 1234577777764 67888776655
No 197
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.53 E-value=0.03 Score=50.50 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=21.8
Q ss_pred CCCCcCchhHHHHHHHHHc----CCeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHF----SGEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~~eiIs~D 27 (269)
+||+|+|||+|+..++..+ +..++.++
T Consensus 50 ~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 50 LGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp ECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 4999999999999999988 45555444
No 198
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.52 E-value=0.025 Score=50.92 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.5
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.||||||||.||..+|..+.
T Consensus 158 ~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 158 YGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp ECSTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 49999999999999998653
No 199
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.42 E-value=0.03 Score=57.30 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=27.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
.||+|||||.||..+|..++..++.+|.-.+
T Consensus 244 ~GPPGTGKT~LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp ECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence 4999999999999999999999888776443
No 200
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.40 E-value=0.035 Score=53.96 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCee--eeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEA--INSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ei--Is~Ds 28 (269)
+||+|||||+|+..+|..++... |+++.
T Consensus 114 ~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 114 AGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp ESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred ECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 49999999999999999987654 44444
No 201
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.35 E-value=0.033 Score=56.04 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.7
Q ss_pred CCCCcCchhHHHHHHHHHc----------CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF----------SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----------~~eiIs~Ds 28 (269)
+||+|||||++|..||+.+ +.+++..|.
T Consensus 207 ~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 207 IGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp ESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 4999999999999999997 666776665
No 202
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.35 E-value=0.027 Score=47.62 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=15.0
Q ss_pred CCCCcCchhHHHHHHH
Q 044048 1 MGATATGKTKLSIDLA 16 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA 16 (269)
+||+|||||||+..|+
T Consensus 36 ~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 5999999999999988
No 203
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.33 E-value=0.02 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.2
Q ss_pred CCCCcCchhHHHHHHHHHcC-Ceeee
Q 044048 1 MGATATGKTKLSIDLAIHFS-GEAIN 25 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~-~eiIs 25 (269)
.|+.||||||++..|++.++ ..+|.
T Consensus 30 eG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 30 EGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp ECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred ECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 39999999999999999994 45554
No 204
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.27 E-value=0.031 Score=46.51 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|+..++...
T Consensus 29 ~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 29 TGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4999999999999998653
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.23 E-value=0.026 Score=47.15 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=16.4
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||+|+..|+..
T Consensus 31 ~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999974
No 206
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.19 E-value=0.041 Score=47.06 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=18.7
Q ss_pred CCCcCchhHHHHHHHHHcCC
Q 044048 2 GATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~ 21 (269)
|+.||||||++..|++.+++
T Consensus 9 G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 9 GNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp ECTTSSHHHHHHHHHHHCTT
T ss_pred cCCCCCHHHHHHHHHHHcCC
Confidence 89999999999999999964
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.19 E-value=0.039 Score=56.31 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=25.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Q 30 (269)
+||+|||||+|+..||..++..+|.++.-.
T Consensus 244 ~Gp~GtGKTtLarala~~l~~~~i~v~~~~ 273 (806)
T 1ypw_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp CSCTTSSHHHHHHHHHHTTTCEEEEEEHHH
T ss_pred ECcCCCCHHHHHHHHHHHcCCcEEEEEchH
Confidence 599999999999999999998877766543
No 208
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.14 E-value=0.028 Score=50.16 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.2
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||+|||||+||..+|+.++.
T Consensus 51 ~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 51 FGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp ECCGGGCTTHHHHHHHHHSCC
T ss_pred ECCCCccHHHHHHHHHHhCcc
Confidence 499999999999999999873
No 209
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.10 E-value=0.03 Score=51.15 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=17.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+++..+++.+
T Consensus 51 ~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 51 TNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp ECCCSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999988
No 210
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.03 E-value=0.034 Score=52.55 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=22.2
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds 28 (269)
.||+|+|||+|+..+|..+ +..++.++.
T Consensus 136 ~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 136 YGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp ECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4999999999999999977 555554443
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.92 E-value=0.042 Score=56.07 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=26.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccce
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQV 31 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~Qv 31 (269)
+||+|||||+||..+|..++..++.++.-.+
T Consensus 517 ~GppGtGKT~Lakala~~~~~~~i~v~~~~l 547 (806)
T 1ypw_A 517 YGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp BCCTTSSHHHHHHHHHHHHTCCCCCCCCSSS
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEechHh
Confidence 5999999999999999999988888765444
No 212
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.92 E-value=0.19 Score=45.84 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=39.9
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALR 75 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~ 75 (269)
+|++|+|||+|+..|+..+ ..-+|.+|.-.-+.+-.+...+....+...-|.-. +++...............+
T Consensus 85 ~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~t~d 162 (355)
T 3p32_A 85 TGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAY--IRPSPTSGTLGGVTRATRE 162 (355)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEE--EECCC--CCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCee--EEECCCCccccchhHHHHH
Confidence 5999999999999999875 23578888554444433333332222222222221 2222222344444455555
Q ss_pred HHHHHHhcCCceEEEc
Q 044048 76 AIDKIIENGHLPIIVG 91 (269)
Q Consensus 76 ~i~~i~~~~~~pIivG 91 (269)
.+..+...+...+++.
T Consensus 163 ~i~~~~~~~~~~iiiD 178 (355)
T 3p32_A 163 TVVLLEAAGFDVILIE 178 (355)
T ss_dssp HHHHHHHTTCCEEEEE
T ss_pred HHHHHhhCCCCEEEEe
Confidence 5544444454445553
No 213
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.87 E-value=0.033 Score=46.99 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=16.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|+..+|...
T Consensus 29 ~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 29 SGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EECTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998753
No 214
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=92.73 E-value=0.26 Score=46.09 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=58.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+| ++|...|-+.++.-..+ .|..|.+.|..|+.+|++ -.+.|+++
T Consensus 238 sGPsg---~tl~~~L~~~~p~~~~~------------~tr~pR~gE~dG~~Y~Fv-----------------~~~~V~~~ 285 (391)
T 3tsz_A 238 FGPIA---DVAREKLAREEPDIYQI------------AKSEPRDAGTDQRSSGII-----------------RLHTIKQI 285 (391)
T ss_dssp ESTTH---HHHHHHHHHHCTTTEEE------------CCCCCCCSSSCCC--CCC-----------------CHHHHHHH
T ss_pred ECCCH---HHHHHHHHhhCcccccc------------ccCCCCCcccCCccCCcC-----------------cHHHHHHH
Confidence 48887 89999998887643332 366788899999999987 35788888
Q ss_pred HhcCCceEEEcc-cHHHHHHHHcchhhhhccccceEEEEEeC-CHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGG-SNTYIEALVEDSIINFRANYDCCFIWMDV-DPLVLYKYVGIR 133 (269)
Q Consensus 81 ~~~~~~pIivGG-t~~Y~~~ll~g~~~~~~~~~~~~~~~l~~-~~e~L~~Ri~~R 133 (269)
+++|+.+|+.=- -|. +.|- ...+.+++|||.| +.++|.+| .+|
T Consensus 286 ~~~Gk~~iLdId~qg~--~~l~-------~~~~~p~~IFI~PPS~~~L~~~-~~r 330 (391)
T 3tsz_A 286 IDQDKHALLDVTPNAV--DRLN-------YAQWYPIVVFLNPDSKQGVKTM-RMR 330 (391)
T ss_dssp HTTTCEEEECCCHHHH--HHHH-------HTTCCCEEEEEECCCHHHHHHH-HHH
T ss_pred HHcCCEEEEEeCHHHH--HHHH-------hCCCCCEEEEEeCcCHHHHHHH-Hhc
Confidence 999998887611 110 1111 0122345666655 57888886 444
No 215
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.65 E-value=0.044 Score=44.45 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.5
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+||+|||||+|...|+-.+++
T Consensus 32 ~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 32 VGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EECTTSSHHHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHHHHHcC
Confidence 599999999999999887764
No 216
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.65 E-value=0.057 Score=55.25 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=28.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCcccee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVY 32 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvY 32 (269)
.||+|||||.||..+|...+..+++++.-.+.
T Consensus 517 ~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 517 YGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp ESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 49999999999999999999999998875544
No 217
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.58 E-value=0.034 Score=50.82 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGL 35 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l 35 (269)
+|++|+|||++|.+|.++ |..+|+=|..-+++.-
T Consensus 150 ~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 150 TGDSGIGKSETALELIKR-GHRLVADDNVEIREIS 183 (314)
T ss_dssp EESTTSSHHHHHHHHHHT-TCEEEESSEEEEEESS
T ss_pred EeCCCCCHHHHHHHHHhc-CCceecCCeEEEEEcC
Confidence 499999999999999886 8999999999998843
No 218
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.56 E-value=0.035 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=18.9
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+||+|+|||+++..+|+.+.+
T Consensus 52 ~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 52 YGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp ECSSSSSHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHcC
Confidence 499999999999999998754
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.48 E-value=0.063 Score=48.09 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=22.3
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~Ds~ 29 (269)
.||||||||.+|..++... + ...|||.++
T Consensus 31 ~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 31 HGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp ESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred ECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 4999999999999999864 2 345666554
No 220
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.46 E-value=0.043 Score=46.18 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||+|+..+|..
T Consensus 30 ~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 30 FGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 499999999999999984
No 221
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.33 E-value=0.05 Score=45.21 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=17.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|++|||||||+..|+..+
T Consensus 10 ~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 10 VGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhh
Confidence 4999999999999999875
No 222
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.27 E-value=0.029 Score=46.43 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||+..|+..+
T Consensus 8 vG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 8 VGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EESCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999999876
No 223
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.27 E-value=0.04 Score=50.97 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||||||||||...|+..+
T Consensus 129 ~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 129 TGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhcc
Confidence 5999999999999887765
No 224
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.27 E-value=0.041 Score=46.94 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHH
Q 044048 113 DCCFIWMDVDPLVLYKYVGIR 133 (269)
Q Consensus 113 ~~~~~~l~~~~e~L~~Ri~~R 133 (269)
+-.+++|++|.+++.+|+.+|
T Consensus 147 pD~vi~Ld~~~e~~~~Ri~~R 167 (230)
T 2vp4_A 147 ADLIIYLRTSPEVAYERIRQR 167 (230)
T ss_dssp CSEEEEEECCHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHc
Confidence 337899999999999998777
No 225
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.26 E-value=0.041 Score=50.67 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=18.1
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||||||||||...|+..++
T Consensus 181 vG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 181 AGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp EESSSSCHHHHHHHHHTTSC
T ss_pred ECCCCCCHHHHHHHHHhcCC
Confidence 59999999999999998765
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.22 E-value=0.043 Score=52.06 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds 28 (269)
+|++||||||++..||..+ ..-+|++|.
T Consensus 105 vG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 105 VGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp ECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 5999999999999999875 356888885
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.17 E-value=0.066 Score=50.92 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=22.7
Q ss_pred CCCCcCchhHHHHHHHHHc---CC--eeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---SG--EAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~--eiIs~Ds 28 (269)
+||+||||||++..||..+ |. -+|.+|.
T Consensus 103 vG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 103 VGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 6999999999999999765 33 4678884
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.13 E-value=0.051 Score=48.95 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+||||||+...||..+
T Consensus 106 vG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 106 VGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 5999999999999999875
No 229
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.12 E-value=0.055 Score=55.32 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=22.2
Q ss_pred CCCCcCchhHHHHHHHHHc---CCeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHF---SGEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~eiIs~D 27 (269)
+||||||||.+|..||..+ +.++|.+|
T Consensus 594 ~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~ 623 (854)
T 1qvr_A 594 LGPTGVGKTELAKTLAATLFDTEEAMIRID 623 (854)
T ss_dssp BSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 5999999999999999988 55555544
No 230
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.11 E-value=0.052 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=19.6
Q ss_pred CCCCcCchhHHHHHHHHHc----CCeee
Q 044048 1 MGATATGKTKLSIDLAIHF----SGEAI 24 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~~eiI 24 (269)
+|||||||||+...|+..+ .+.|+
T Consensus 142 vG~~GsGKTTll~~l~~~~~~~~~g~I~ 169 (372)
T 2ewv_A 142 TGPTGSGKSTTIASMIDYINQTKSYHII 169 (372)
T ss_dssp ECSSSSSHHHHHHHHHHHHHHHSCCEEE
T ss_pred ECCCCCCHHHHHHHHHhhcCcCCCcEEE
Confidence 5999999999999998765 35554
No 231
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.10 E-value=0.052 Score=48.99 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=17.3
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+||||||+...||..+
T Consensus 108 vG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 108 VGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 5999999999999999765
No 232
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.05 E-value=0.047 Score=48.94 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|+|||+++..+|+.+
T Consensus 42 ~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 42 YGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp ECSTTSSHHHHHHTHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999965
No 233
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.99 E-value=0.065 Score=48.10 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=19.3
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||+|+|||+++..+|+.++.
T Consensus 44 ~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 44 SGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp ESCTTSSHHHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHHHhCC
Confidence 499999999999999999865
No 234
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.98 E-value=0.057 Score=51.05 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=17.7
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||||||||||...|+..++
T Consensus 173 ~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 173 TGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp ECSTTSCHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHhhcC
Confidence 59999999999999988764
No 235
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.95 E-value=0.056 Score=48.16 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=18.3
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.||+|+|||+++..+|+.++
T Consensus 64 ~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 64 YGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp ECSTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 49999999999999999864
No 236
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.91 E-value=0.052 Score=45.14 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||++++.++.++
T Consensus 9 ~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 9 TGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998765
No 237
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.86 E-value=0.065 Score=43.65 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=18.1
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||.|||||||...|+..++
T Consensus 39 ~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHhCC
Confidence 59999999999999999873
No 238
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.84 E-value=0.057 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.0
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+||+|||||||+..|+..++.
T Consensus 176 vG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp ECCTTSHHHHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHHHHhCC
Confidence 599999999999999998764
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.84 E-value=0.052 Score=48.76 Aligned_cols=28 Identities=32% Similarity=0.334 Sum_probs=22.4
Q ss_pred CCCCcCchhHHHHHHHHHcC---C---eeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFS---G---EAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~---~---eiIs~Ds 28 (269)
+||+||||||++..||..+. | -++.+|.
T Consensus 111 vG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 111 FGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 59999999999999997552 3 4677776
No 240
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.74 E-value=0.076 Score=50.69 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~ 29 (269)
+||+||||||++..||..+ ..-+|.+|..
T Consensus 106 vG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 106 VGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred ECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 5999999999999999765 2357888864
No 241
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.66 E-value=0.055 Score=47.49 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.3
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.||+|+|||+++..+|+.++
T Consensus 52 ~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 52 AGPPGVGKTTAALALARELF 71 (327)
T ss_dssp ESCTTSSHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHhc
Confidence 49999999999999999874
No 242
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.62 E-value=0.051 Score=47.00 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 37 iG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 5999999999999888554
No 243
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.58 E-value=0.07 Score=48.94 Aligned_cols=19 Identities=37% Similarity=0.579 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|+..++...
T Consensus 137 ~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999875
No 244
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.56 E-value=0.066 Score=51.77 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=19.0
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.||+|+|||+||..||..++.
T Consensus 47 ~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 47 LGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp ECCSSSSHHHHHHHGGGGBSS
T ss_pred ecCchHHHHHHHHHHHHHHhh
Confidence 499999999999999998854
No 245
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.55 E-value=0.25 Score=45.29 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+|+..+|...
T Consensus 67 ~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 67 YGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998653
No 246
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.41 E-value=0.093 Score=52.57 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=17.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+++..||..+
T Consensus 213 ~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 213 VGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 5999999999999999987
No 247
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.33 E-value=0.071 Score=48.24 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=21.7
Q ss_pred CCCCcCchhHHHHHHHHHc---CC--eeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---SG--EAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~--eiIs~Ds 28 (269)
+||+||||||++..||..+ ++ -++.+|.
T Consensus 110 vG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 110 VGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred EcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 5999999999999999876 33 3556664
No 248
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.27 E-value=0.077 Score=44.47 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=17.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||...|+..+
T Consensus 7 ~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp ESCCSSCHHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHhhc
Confidence 5999999999999999876
No 249
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.24 E-value=0.083 Score=48.18 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=29.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKG 34 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~ 34 (269)
.|++|+|||++|.+|.+ .|..+|+=|..-+++.
T Consensus 153 ~G~sG~GKStlal~l~~-~G~~lv~DD~v~i~~~ 185 (312)
T 1knx_A 153 TGRSGIGKSECALDLIN-KNHLFVGDDAIEIYRL 185 (312)
T ss_dssp EESSSSSHHHHHHHHHT-TTCEEEEEEEEEEEEE
T ss_pred EcCCCCCHHHHHHHHHH-cCCEEEeCCEEEEEEe
Confidence 49999999999999986 4899999999999873
No 250
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.20 E-value=0.078 Score=46.33 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=17.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|+|||+++..+|+.+
T Consensus 44 ~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 44 SGPPGTGKTATAIALARDL 62 (319)
T ss_dssp ESSSSSSHHHHHHHHHHHH
T ss_pred ECcCCcCHHHHHHHHHHHh
Confidence 4999999999999999986
No 251
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.20 E-value=0.052 Score=49.44 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.8
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||||||||||...|+..++
T Consensus 177 ~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp EESTTSCHHHHHHHGGGGSC
T ss_pred ECCCCCCHHHHHHHHhCCCc
Confidence 59999999999999998764
No 252
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.19 E-value=0.067 Score=45.53 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=18.0
Q ss_pred CCCCcCchhHHHHHHHHH--cCCee
Q 044048 1 MGATATGKTKLSIDLAIH--FSGEA 23 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~--~~~ei 23 (269)
+||+|||||||..-|+-- ..|+|
T Consensus 28 iG~nGsGKSTLl~~l~Gl~p~~G~I 52 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQALQSKQV 52 (208)
T ss_dssp ECCTTSSTTHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCHHHHHHHHhcCCCcCCee
Confidence 599999999999988854 23555
No 253
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.17 E-value=0.092 Score=44.15 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.7
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
.|++|+|||+|+.++|.+
T Consensus 36 ~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 36 TGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 499999999999998754
No 254
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.12 E-value=0.086 Score=48.52 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=24.8
Q ss_pred CCCCcCchhHHHHHHHHH---cCCeeeeCCccceec
Q 044048 1 MGATATGKTKLSIDLAIH---FSGEAINSDKIQVYK 33 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~---~~~eiIs~Ds~QvYk 33 (269)
+||||||||++...++.. .++.|+-.|.-.=|+
T Consensus 41 ~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~ 76 (392)
T 4ag6_A 41 LAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYK 76 (392)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSH
T ss_pred EcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHH
Confidence 599999999999888765 467777777644443
No 255
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=91.07 E-value=0.48 Score=42.99 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=61.2
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHHH
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKII 81 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i~ 81 (269)
|.=|||||+....|...++-.-+. -+.|.+|+.+|+. ||++- +....+-
T Consensus 93 G~DgAGKgt~Ik~L~e~Ldprg~~----------V~~~~~Pt~eE~~---~~yl~------------------R~~~~LP 141 (304)
T 3czq_A 93 GRDAAGKGGAIHATTANMNPRSAR----------VVALTKPTETERG---QWYFQ------------------RYVATFP 141 (304)
T ss_dssp ESTTSSHHHHHHHHHTTSCTTTEE----------EEECCSCCHHHHT---SCTTH------------------HHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHhcccCCe----------EEEeCCcChHHHh---chHHH------------------HHHHhcc
Confidence 677999999999999998643111 2457899988886 44221 1222333
Q ss_pred hcCCceEEEcccHH--HHHHHHcchhh-----------hh-----ccccceEEEEEeCCHHHHHHHHHHHH
Q 044048 82 ENGHLPIIVGGSNT--YIEALVEDSII-----------NF-----RANYDCCFIWMDVDPLVLYKYVGIRV 134 (269)
Q Consensus 82 ~~~~~pIivGGt~~--Y~~~ll~g~~~-----------~~-----~~~~~~~~~~l~~~~e~L~~Ri~~Rv 134 (269)
++|++.|+-...-. -++.+..+... .| ......+.|||+.++++..+|+.+|-
T Consensus 142 ~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~ 212 (304)
T 3czq_A 142 TAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRR 212 (304)
T ss_dssp CTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHH
T ss_pred cCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhh
Confidence 57776555433200 01111111110 11 12345678999999999999998885
No 256
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.03 E-value=0.076 Score=46.19 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 30 iG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998654
No 257
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.91 E-value=0.3 Score=45.18 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+|+..+|...
T Consensus 67 ~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 67 FGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998764
No 258
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.90 E-value=0.074 Score=46.83 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|+|||+|+..||..+
T Consensus 41 ~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 4999999999999998764
No 259
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.85 E-value=0.11 Score=47.22 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|+|||+|+..+++.+
T Consensus 58 ~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHHHH
Confidence 5999999999999999876
No 260
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.83 E-value=0.1 Score=44.65 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCCCcCchhHHHHHHHHHc----CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF----SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~----~~eiIs~Ds 28 (269)
+|..||||||++..||..+ ..-+|++|.
T Consensus 20 ~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 20 VGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp ECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4899999999999999654 345788886
No 261
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.81 E-value=0.072 Score=46.62 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|+..++...
T Consensus 36 ~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 36 VSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4999999999999998643
No 262
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.80 E-value=0.1 Score=44.82 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=17.7
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||||+|||.++..++..++
T Consensus 114 ~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 114 VLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp EESSSTTHHHHHHHHHHHSC
T ss_pred EeCCCCCHHHHHHHHHHHcC
Confidence 48999999999999998864
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.76 E-value=0.086 Score=48.87 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+||||||+...||..+
T Consensus 163 vG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 163 VGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHhhc
Confidence 5999999999999999875
No 264
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=90.75 E-value=0.084 Score=46.58 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.2
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds 28 (269)
.||.|+|||+|+..+++..+...++++.
T Consensus 37 ~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 37 LGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp ECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred ECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 4999999999999999998755666543
No 265
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.74 E-value=0.069 Score=51.73 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=17.6
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|||||||||+...|+..++
T Consensus 266 ~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 266 VGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp EESTTSSHHHHHHHHGGGSC
T ss_pred ECCCCCCHHHHHHHHHhhCC
Confidence 59999999999999987764
No 266
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.72 E-value=0.092 Score=43.51 Aligned_cols=19 Identities=32% Similarity=0.268 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||...|...+
T Consensus 12 ~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 12 AAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHhc
Confidence 5999999999999998764
No 267
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.72 E-value=0.087 Score=48.10 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=17.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+||||||+...||..+
T Consensus 135 vG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 135 VGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999999765
No 268
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.70 E-value=0.071 Score=47.12 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 43 iG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ECCTTSCHHHHHHHHTSSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 5999999999999998654
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.69 E-value=0.072 Score=46.12 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+.-+
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998654
No 270
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.67 E-value=0.1 Score=43.26 Aligned_cols=28 Identities=32% Similarity=0.255 Sum_probs=21.4
Q ss_pred CCCCcCchhHHHHHHHHHcC----CeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFS----GEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~----~eiIs~Ds 28 (269)
+|++|||||+|...|+..+. ..+|..|.
T Consensus 36 ~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~ 67 (221)
T 2wsm_A 36 MGAIGSGKTLLIERTIERIGNEVKIGAMLGDV 67 (221)
T ss_dssp EECTTSCHHHHHHHHHHHHTTTSCEEEEECSC
T ss_pred EcCCCCCHHHHHHHHHHHhccCCeEEEEecCC
Confidence 59999999999999998753 34555553
No 271
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.66 E-value=0.11 Score=47.08 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCCCcCchhHHHHHHHHHc---CC--eeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---SG--EAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~--eiIs~Ds 28 (269)
+||+|+||||++..||..+ ++ -++.+|.
T Consensus 111 vG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 111 VGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4999999999999999865 33 3666664
No 272
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.60 E-value=0.073 Score=47.39 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 40 iGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998654
No 273
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.58 E-value=0.094 Score=45.89 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=18.2
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.||+|+|||+++..+|+.+.
T Consensus 48 ~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 48 SGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp ECSTTSSHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHhc
Confidence 49999999999999999863
No 274
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.56 E-value=0.065 Score=45.94 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 36 iG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EECTTSCHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999888544
No 275
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.48 E-value=0.1 Score=44.00 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=17.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+.++.+|.++
T Consensus 14 ~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 14 VGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 4999999999999999886
No 276
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.36 E-value=0.079 Score=46.62 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 38 iG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998654
No 277
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.30 E-value=0.43 Score=44.11 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=20.4
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~D 27 (269)
.||+|||||+|+..+|... + +-+|+.+
T Consensus 80 ~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 80 YGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4899999999999998764 3 3455554
No 278
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.26 E-value=0.12 Score=46.37 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=22.1
Q ss_pred CCCCcCchhHHHHHHHHHc---CC--eeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---SG--EAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~--eiIs~Ds 28 (269)
+|++|+||||++..||..+ +. -++.+|.
T Consensus 104 ~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 104 VGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp ECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4999999999999999766 33 4666664
No 279
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.24 E-value=0.13 Score=46.49 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=20.1
Q ss_pred CCCCcCchhHHHHHHHHHcCCe
Q 044048 1 MGATATGKTKLSIDLAIHFSGE 22 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e 22 (269)
.||.|+|||++|..+|+.++++
T Consensus 30 ~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 30 QALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp ECCTTSCHHHHHHHHHHHHTCS
T ss_pred ECCCCchHHHHHHHHHHHHhCC
Confidence 4999999999999999998764
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.19 E-value=0.083 Score=45.78 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998654
No 281
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=90.08 E-value=0.12 Score=45.25 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~D 27 (269)
+|+.|||||++|.-|++.+|.++++..
T Consensus 7 tG~~~sGK~tv~~~l~~~~g~~~~~~~ 33 (241)
T 1dek_A 7 SGVKRSGKDTTADFIMSNYSAVKYQLA 33 (241)
T ss_dssp ECCTTSSHHHHHHHHHHHSCEEECCTT
T ss_pred ECCCCCCHHHHHHHHHHhcCCeEEecC
Confidence 489999999999999999998886644
No 282
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.08 E-value=0.1 Score=45.40 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=16.2
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||||..-|+--
T Consensus 35 ~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ECSTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999864
No 283
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.05 E-value=0.13 Score=44.49 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||++++.++.++
T Consensus 18 tG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 18 TGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 4999999999999999887
No 284
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.05 E-value=0.088 Score=46.09 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 39 iG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998654
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.96 E-value=0.09 Score=45.53 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999988654
No 286
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.92 E-value=0.12 Score=46.48 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+|+..+|...
T Consensus 113 ~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 113 FGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EESTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHhHHHHHHHHHH
Confidence 4999999999999999863
No 287
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.79 E-value=0.094 Score=45.69 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999988654
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.75 E-value=0.11 Score=45.71 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=16.2
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||||..-|+--
T Consensus 52 ~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECCTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999864
No 289
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.68 E-value=0.097 Score=44.99 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998665
No 290
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.64 E-value=0.099 Score=44.75 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 41 iG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999988654
No 291
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.61 E-value=0.12 Score=41.29 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=17.1
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+||+|||||++.-+|.-.+.+
T Consensus 29 ~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp ECCTTSSHHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHHHHcC
Confidence 599999999998888766533
No 292
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.58 E-value=0.15 Score=46.37 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||+|+..+|..
T Consensus 128 ~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 128 FGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp ECCTTCTHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999986
No 293
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.58 E-value=0.1 Score=45.88 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 52 ~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 5999999999999998654
No 294
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=89.53 E-value=0.55 Score=45.05 Aligned_cols=88 Identities=11% Similarity=0.087 Sum_probs=47.8
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+||+|+| |...|-+.++....++ .|- |.+.|..|+.||+ + -...|+++
T Consensus 230 sGPsG~G---l~~~Ll~~~p~~f~s~-----------~TR-pR~gE~dG~~Y~F----------T-------s~~~V~~v 277 (468)
T 3shw_A 230 FGPIADV---AREKLAREEPDIYQIA-----------KSE-PRDAGTDQRSSGI----------I-------RLHTIKQI 277 (468)
T ss_dssp ESTTHHH---HHHHHHHHCTTTEEEC-----------CCB-C----------CB----------C-------CHHHHHHH
T ss_pred ECCCHHH---HHHHHHHhCCCceeee-----------cCC-CCCcccccccCCc----------c-------cHHHHHHH
Confidence 4999999 8888888776444332 266 8899999999997 2 45677888
Q ss_pred HhcCCceEEEcc-cHHHHHHHHcchhhhhccccceEEEEEeC-CHHHHHHH
Q 044048 81 IENGHLPIIVGG-SNTYIEALVEDSIINFRANYDCCFIWMDV-DPLVLYKY 129 (269)
Q Consensus 81 ~~~~~~pIivGG-t~~Y~~~ll~g~~~~~~~~~~~~~~~l~~-~~e~L~~R 129 (269)
+++|+.+|+.=- -|. +.|- ...+.+++|||.| +.++|.++
T Consensus 278 l~~Gk~~iLdId~qg~--~~l~-------~~~~~p~~IFI~PPS~e~L~~~ 319 (468)
T 3shw_A 278 IDQDKHALLDVTPNAV--DRLN-------YAQWYPIVVFLNPDSKQGVKTM 319 (468)
T ss_dssp HTTTCEEEECCCHHHH--HHHH-------HTTCCCEEEEEECSCHHHHHHH
T ss_pred HHCCCeEEEEeCHHHH--HHHH-------hcCCCCEEEEEeCcCHHHHHHH
Confidence 899998887611 110 1111 1122345666665 56788763
No 295
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.44 E-value=0.1 Score=46.05 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 56 iG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCCcHHHHHHHHHcCC
Confidence 5999999999999998654
No 296
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.43 E-value=0.15 Score=44.95 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=22.0
Q ss_pred CCCCcCchhHHHHHHHHHcCC--eeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSG--EAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~--eiIs~Ds 28 (269)
.||.|+|||+|+.++++..+. .++++..
T Consensus 36 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 36 LGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp EESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred ECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 499999999999999998754 3455543
No 297
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.40 E-value=0.17 Score=43.41 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=19.2
Q ss_pred CCCcCchhHHHHHHHHHcCC
Q 044048 2 GATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~ 21 (269)
|+.||||||++..|++.++.
T Consensus 12 G~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 12 GLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp ECSSSSHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHhcc
Confidence 89999999999999999986
No 298
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.38 E-value=0.1 Score=45.78 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 47 ~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998654
No 299
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.32 E-value=0.11 Score=49.24 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=22.9
Q ss_pred CCCCcCchhHHHHHHHHHc------CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF------SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~------~~eiIs~Ds 28 (269)
+|++||||||++..||..+ ..-+|.+|.
T Consensus 106 vG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 106 AGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4899999999999999665 235888885
No 300
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.32 E-value=0.092 Score=45.49 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=17.6
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|||||+|...|+-.+.
T Consensus 33 ~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HSCCSHHHHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcccc
Confidence 49999999999999987764
No 301
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.20 E-value=0.11 Score=45.70 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 39 iG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999998654
No 302
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=89.13 E-value=0.25 Score=41.76 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.5
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
.|+.|||||++|+.++..
T Consensus 11 tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 11 TGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 499999999999997544
No 303
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.12 E-value=0.11 Score=45.38 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=17.1
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|||||||..-|+--+.
T Consensus 32 iG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ECCTTSSHHHHHHHHTTSSC
T ss_pred ECCCCCcHHHHHHHHhCCCC
Confidence 59999999999999986543
No 304
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.10 E-value=0.51 Score=38.42 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=20.4
Q ss_pred CCCcCchhHHHHHHHHHc---C--CeeeeCC
Q 044048 2 GATATGKTKLSIDLAIHF---S--GEAINSD 27 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~---~--~eiIs~D 27 (269)
+-.|+|||++|..||..+ | .-+|.+|
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456899999999999876 2 4577777
No 305
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.93 E-value=0.12 Score=46.04 Aligned_cols=19 Identities=32% Similarity=0.200 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 53 iG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999998654
No 306
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.91 E-value=0.12 Score=45.22 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998655
No 307
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.83 E-value=0.15 Score=50.03 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.6
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|||||+|+..||..++
T Consensus 66 ~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 66 IGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp ECCTTSSHHHHHHHHHHTSC
T ss_pred EeCCCCCHHHHHHHHhccCC
Confidence 59999999999999999875
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.82 E-value=0.12 Score=45.64 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 51 ~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998665
No 309
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.79 E-value=0.096 Score=47.43 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+.-+
T Consensus 86 vG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ESSSCHHHHHHHHHHTTSS
T ss_pred ECCCCchHHHHHHHHHcCC
Confidence 5999999999999988765
No 310
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.79 E-value=0.14 Score=42.61 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=20.9
Q ss_pred CCCCcCchhHHHHHHHHHcC----CeeeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFS----GEAINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~----~eiIs~D 27 (269)
+|++|||||+|...|+.... ..+|..|
T Consensus 44 vG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 44 MGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp EESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred EcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 58999999999999998752 3455544
No 311
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.56 E-value=0.19 Score=46.13 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=20.1
Q ss_pred CCCCcCchhHHHHHHHHHcCC--eeeeC
Q 044048 1 MGATATGKTKLSIDLAIHFSG--EAINS 26 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~--eiIs~ 26 (269)
.||+|+|||+||..+|...+. -.|++
T Consensus 129 ~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 129 TGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 499999999999999986332 35554
No 312
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.29 E-value=0.26 Score=42.92 Aligned_cols=28 Identities=21% Similarity=-0.003 Sum_probs=22.1
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~Ds 28 (269)
.|+.|+|||+++..+|..+ | .-++.+|.
T Consensus 12 ~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 12 GAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3899999999999998765 3 34678875
No 313
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.19 E-value=0.17 Score=49.02 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=17.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||...||..+
T Consensus 299 VGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 299 VGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCcccHHHHHHHHHHHh
Confidence 5999999999999999765
No 314
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.96 E-value=0.2 Score=48.47 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~Ds 28 (269)
+|++||||||++..||..+ | .-+|++|.
T Consensus 107 vG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 5899999999999999754 2 45788886
No 315
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.94 E-value=0.15 Score=45.00 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.3
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 36 ~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999988543
No 316
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.83 E-value=0.17 Score=44.76 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=17.1
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|+|||||...|+...
T Consensus 8 vG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 8 VGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EESSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998765
No 317
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.81 E-value=0.18 Score=47.13 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-||--.
T Consensus 35 lGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHHcCC
Confidence 5999999999999999654
No 318
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.80 E-value=0.16 Score=47.07 Aligned_cols=19 Identities=42% Similarity=0.345 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-||--.
T Consensus 36 lGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EESTTSSHHHHHHHHHTSS
T ss_pred ECCCCchHHHHHHHHhcCC
Confidence 5999999999999999654
No 319
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.74 E-value=0.23 Score=42.85 Aligned_cols=21 Identities=38% Similarity=0.279 Sum_probs=18.8
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.|+.||||||++..|++.++.
T Consensus 27 ~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 27 EGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp ECSTTSSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhh
Confidence 399999999999999998854
No 320
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.73 E-value=0.19 Score=46.54 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-||--.
T Consensus 47 lGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999654
No 321
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.67 E-value=0.19 Score=42.67 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=11.5
Q ss_pred CCCCcCchhHHHHHH
Q 044048 1 MGATATGKTKLSIDL 15 (269)
Q Consensus 1 ~GpTgsGKS~la~~L 15 (269)
.||||||||++...+
T Consensus 82 ~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 82 RGATGCGKTTQVPQF 96 (235)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred EeCCCCCcHHhHHHH
Confidence 499999999765443
No 322
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.63 E-value=0.22 Score=38.51 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|++|+|||+|...+....
T Consensus 7 ~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 7 VGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp ECCTTSSHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998653
No 323
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.55 E-value=0.25 Score=46.80 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=22.3
Q ss_pred CCCCcCchhHHHHHHHHHc---CC--eeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---SG--EAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~--eiIs~Ds 28 (269)
+||+||||||++..||..+ +. -++.+|-
T Consensus 104 ~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 104 VGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 4999999999999999876 33 4677774
No 324
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.53 E-value=0.19 Score=46.46 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-||--.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHHCCC
Confidence 5999999999999999654
No 325
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.50 E-value=0.21 Score=40.83 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.3
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||+|...|+..
T Consensus 11 vG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 11 IGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp ESSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHhcC
Confidence 599999999999999865
No 326
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.47 E-value=0.26 Score=43.86 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||.||..||..+
T Consensus 110 ~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 110 FGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhhh
Confidence 4999999999999999974
No 327
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.43 E-value=0.2 Score=46.48 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-||--.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCchHHHHHHHHhcCC
Confidence 5999999999999999654
No 328
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=87.39 E-value=0.65 Score=39.61 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=22.0
Q ss_pred CCCcCchhHHHHHHHHHc---C--CeeeeCCcc
Q 044048 2 GATATGKTKLSIDLAIHF---S--GEAINSDKI 29 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~---~--~eiIs~Ds~ 29 (269)
+-.|+|||++|..||..+ | .-+|.+|..
T Consensus 10 ~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 10 GKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 457999999999999876 2 357888864
No 329
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.31 E-value=0.2 Score=44.76 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=16.5
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
.||+|||||+|+..+|..
T Consensus 104 ~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 104 AGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999975
No 330
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.15 E-value=0.19 Score=40.99 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|...|+...
T Consensus 35 vG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 35 IGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EECTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999998653
No 331
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.14 E-value=0.21 Score=46.39 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-||--.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCcHHHHHHHHHHcCC
Confidence 5999999999999998654
No 332
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=87.08 E-value=0.12 Score=50.98 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=21.3
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeee
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAIN 25 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs 25 (269)
+||+|+|||.||..+|+.++..+..
T Consensus 333 ~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 333 IGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp EESSCCTHHHHHHSSSTTCSCEECC
T ss_pred ECCCchHHHHHHHHHHHhCCCceec
Confidence 4999999999999999998765444
No 333
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.07 E-value=0.23 Score=39.28 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|+..
T Consensus 9 vG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 9 IGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp ECSTTSSHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999853
No 334
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.02 E-value=0.23 Score=44.40 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=21.3
Q ss_pred CCCCcCchhHHHHHHHHHc---CC--eeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---SG--EAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~~--eiIs~Ds 28 (269)
+|++|+||||++..||..+ ++ -++.+|.
T Consensus 104 ~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 104 VGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp ECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 4899999999999999765 33 3555554
No 335
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.97 E-value=0.22 Score=46.37 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-||--.
T Consensus 43 lGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCChHHHHHHHHHcCC
Confidence 5999999999999999654
No 336
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.96 E-value=0.24 Score=46.11 Aligned_cols=29 Identities=34% Similarity=0.295 Sum_probs=21.2
Q ss_pred CCCCcCchhHHHHHHHH---HcCCeeeeCCcc
Q 044048 1 MGATATGKTKLSIDLAI---HFSGEAINSDKI 29 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~---~~~~eiIs~Ds~ 29 (269)
+||||||||++...+.. ..|..+|-.|.-
T Consensus 59 ~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 59 NGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 59999999998755543 347777777753
No 337
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.90 E-value=0.28 Score=44.05 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|++|+|||+|+..+|...
T Consensus 74 ~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 74 AARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 4899999999999999764
No 338
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.87 E-value=0.67 Score=44.90 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=14.2
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+|+||||||++...|..
T Consensus 173 aG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 173 AGTTGSGASVGVNAMIL 189 (512)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999998777654
No 339
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.81 E-value=0.22 Score=46.27 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 60 iGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHhcCC
Confidence 5999999999999888654
No 340
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.78 E-value=0.23 Score=38.24 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 9 ~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999864
No 341
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.69 E-value=0.25 Score=38.33 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|||||+|...|...
T Consensus 11 ~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 11 VGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp ECSTTSSHHHHHHHHHHC
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 342
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=86.69 E-value=0.32 Score=44.42 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=21.5
Q ss_pred CCCCcCchhHHHHHHHHHc-----CCeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF-----SGEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~-----~~eiIs~Ds 28 (269)
+|++|||||||...|+..+ ...|++.|-
T Consensus 80 vG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 80 SGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 5999999999999998754 234666654
No 343
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.69 E-value=0.18 Score=46.51 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-||--.
T Consensus 32 lGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECCCTHHHHHHHHHHHTSS
T ss_pred ECCCCccHHHHHHHHHcCC
Confidence 5999999999999998654
No 344
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=86.45 E-value=0.27 Score=40.23 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.+|||+|||..+..++..+
T Consensus 54 ~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 54 CLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp ECSCHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 3899999999998888754
No 345
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.38 E-value=0.23 Score=41.70 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.2
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+||+|||||++.-+|.-.+++
T Consensus 29 ~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 29 IGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp ECCTTSSHHHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHhcC
Confidence 599999999998888877765
No 346
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.26 E-value=0.19 Score=45.05 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 70 ~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EESTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 5999999999999998654
No 347
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=86.22 E-value=0.75 Score=41.66 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=22.8
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCCccc
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSDKIQ 30 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~Ds~Q 30 (269)
+|++|+|||||...|+..+ + ..|++.|...
T Consensus 62 ~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 62 TGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp EECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 5999999999999998654 3 3577777644
No 348
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.20 E-value=0.33 Score=44.59 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=16.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+|++.++...
T Consensus 34 ~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 34 AGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EESSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999987653
No 349
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.12 E-value=0.28 Score=39.21 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|+..
T Consensus 13 vG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 13 IGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp ECSTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999853
No 350
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.05 E-value=0.29 Score=39.33 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|++|||||+|...|....
T Consensus 54 vG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 54 AGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp ECCTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998653
No 351
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=86.03 E-value=0.18 Score=46.51 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-||--.
T Consensus 37 lGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999654
No 352
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=85.97 E-value=0.35 Score=55.46 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCCCcCchhHHHHHHHHHcCCe--eeeCC
Q 044048 1 MGATATGKTKLSIDLAIHFSGE--AINSD 27 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e--iIs~D 27 (269)
.||+|+|||.++.+||+.+|.. ++||+
T Consensus 651 ~GpaGtGKTe~vk~LA~~lg~~~v~~nc~ 679 (2695)
T 4akg_A 651 FGPAGTGKTETVKAFGQNLGRVVVVFNCD 679 (2695)
T ss_dssp ECCTTSCHHHHHHHHHHTTTCCCEEEETT
T ss_pred cCCCCCCcHHHHHHHHHHhCCcEEEEECC
Confidence 3999999999999999999875 55554
No 353
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.96 E-value=0.27 Score=46.35 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|++|+|||+|+..+|...
T Consensus 209 ~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 209 AARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998754
No 354
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=85.93 E-value=0.23 Score=46.42 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||||..-||--
T Consensus 53 lGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EESTTSSHHHHHHHHHTC
T ss_pred ECCCCChHHHHHHHHhCC
Confidence 599999999999999854
No 355
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.71 E-value=0.24 Score=39.88 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.6
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+|++|+|||+|...++.
T Consensus 8 vG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 8 VGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp ESCTTSSHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 59999999999999986
No 356
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.70 E-value=0.35 Score=44.01 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||...|+..+
T Consensus 61 ~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 61 TGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhh
Confidence 5999999999999998654
No 357
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.66 E-value=0.25 Score=46.38 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=15.6
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||+|+..||..
T Consensus 184 ~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 184 FGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EcCCCCChHHHHHHHHHH
Confidence 499999999999988744
No 358
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.63 E-value=0.28 Score=45.11 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=15.1
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||||||||+|--.|+-.+
T Consensus 29 ~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 29 EGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999976666443
No 359
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=85.50 E-value=0.33 Score=37.41 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=15.7
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...+...
T Consensus 9 ~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 9 LGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999888754
No 360
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.40 E-value=0.32 Score=40.01 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|++|||||+|...|....
T Consensus 18 ~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 18 AGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp ECSTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998764
No 361
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=85.38 E-value=0.32 Score=37.52 Aligned_cols=18 Identities=22% Similarity=0.553 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 10 ~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 10 VGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999998854
No 362
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.37 E-value=0.35 Score=44.54 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.7
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+||..+|...
T Consensus 69 ~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 69 YGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998753
No 363
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.14 E-value=0.33 Score=37.58 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|||||+|...|...
T Consensus 9 ~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999998754
No 364
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.11 E-value=0.32 Score=43.69 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|+.|||||||...|+...
T Consensus 10 ~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EESSSSSCHHHHHHHHHSC
T ss_pred EecCCCCHHHHHHHHHhhc
Confidence 4999999999999999764
No 365
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.04 E-value=0.34 Score=37.65 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.5
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+|++|+|||+|...|..
T Consensus 9 ~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 9 FGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp ECCTTSSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHc
Confidence 59999999999999985
No 366
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=84.92 E-value=0.36 Score=37.47 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 12 ~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 12 LGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999999755
No 367
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=84.87 E-value=0.34 Score=38.06 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|||||+|...|...
T Consensus 14 ~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 14 LGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999998754
No 368
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.69 E-value=0.29 Score=46.73 Aligned_cols=19 Identities=42% Similarity=0.473 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+--+
T Consensus 144 vGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 144 VGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp EESTTSSHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhCcc
Confidence 5999999999999988654
No 369
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=84.56 E-value=0.37 Score=37.57 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=15.3
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+|++|||||+|...|..
T Consensus 8 vG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 8 VGESGVGKSTLAGTFGG 24 (169)
T ss_dssp ECSTTSSHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 59999999999999864
No 370
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=84.56 E-value=1.1 Score=46.69 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=48.4
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
.|-|||.+|. +.++.+-+|..+|. |-||+|..- . -+-|.+- -|..+......+.|.++
T Consensus 382 sGMTGTA~tE-~~Ef~~iY~l~Vv~-----------IPTn~p~~R----~--D~~d~vy----~t~~~K~~AIv~eI~~~ 439 (997)
T 2ipc_A 382 AGMTGTAKTE-EKEFQEIYGMDVVV-----------VPTNRPVIR----K--DFPDVVY----RTEKGKFYAVVEEIAEK 439 (997)
T ss_dssp EEEESSCGGG-HHHHHHHHCCCEEE-----------CCCSSCCCC----E--EEEEEEE----SSHHHHHHHHHHHHHHH
T ss_pred eecCCCchHH-HHHHHHHhCCCEEE-----------cCCCCCccc----c--cCCCeEE----cCHHHHHHHHHHHHHHH
Confidence 4889999986 66788777777655 788998731 1 1112222 25566666667778888
Q ss_pred HhcCCceEEEccc
Q 044048 81 IENGHLPIIVGGS 93 (269)
Q Consensus 81 ~~~~~~pIivGGt 93 (269)
+++|+ ||+||-+
T Consensus 440 ~~~Gq-PVLVgT~ 451 (997)
T 2ipc_A 440 YERGQ-PVLVGTI 451 (997)
T ss_dssp HHHTC-CEEEECS
T ss_pred HHCCC-CEEEEeC
Confidence 88887 9999886
No 371
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=84.51 E-value=0.34 Score=43.25 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=16.3
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|+|||||...|+ ..
T Consensus 171 ~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp ECSTTSSHHHHHHHHH-SC
T ss_pred ECCCCCCHHHHHHHHH-Hh
Confidence 5999999999999999 54
No 372
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=84.50 E-value=0.32 Score=37.78 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 9 ~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 9 IGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EESTTSSHHHHHHHHHHC
T ss_pred ECcCCCCHHHHHHHHHhC
Confidence 599999999999999753
No 373
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.28 E-value=0.34 Score=47.19 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=17.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+.-+
T Consensus 375 vG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998765
No 374
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.25 E-value=0.34 Score=45.58 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|++|+|||+|+..+|...
T Consensus 206 ~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 206 AARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp EECTTSCHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 4899999999999998764
No 375
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=84.18 E-value=0.41 Score=37.04 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 12 ~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 12 LGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999853
No 376
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=84.07 E-value=0.47 Score=41.24 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
.+|||||||..+..++..
T Consensus 134 ~~~tGsGKT~~~~~~~~~ 151 (282)
T 1rif_A 134 NLPTSAGRSLIQALLARY 151 (282)
T ss_dssp CCCTTSCHHHHHHHHHHH
T ss_pred EcCCCCCcHHHHHHHHHH
Confidence 489999999999888875
No 377
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.01 E-value=0.39 Score=38.41 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=16.2
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|||||+|...|+..
T Consensus 27 vG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 27 VGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 378
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=83.89 E-value=0.43 Score=37.13 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 12 ~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 12 LGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp ECCTTSCHHHHHHHHHHC
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999998854
No 379
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=83.86 E-value=0.41 Score=37.02 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 9 ~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 9 LGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp ECSTTSSHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999998753
No 380
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=83.79 E-value=0.41 Score=37.43 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.6
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 10 ~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 10 LGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp ECCTTSSHHHHHHHHHCC
T ss_pred ECCCCccHHHHHHHHhcC
Confidence 599999999999988743
No 381
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=83.79 E-value=0.38 Score=43.49 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|.-++.-.+
T Consensus 29 ~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 29 IGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999988775443
No 382
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=83.73 E-value=0.18 Score=41.20 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.3
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|||||+|...|+..
T Consensus 32 vG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 32 AGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EECTTSSHHHHHTTTCCC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999887643
No 383
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=83.59 E-value=0.48 Score=36.69 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...+...
T Consensus 6 ~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 6 VGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999754
No 384
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=83.50 E-value=0.43 Score=37.49 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 13 ~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 13 LGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999754
No 385
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.45 E-value=0.35 Score=43.33 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|.-.|.--+
T Consensus 30 ~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 30 VGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp ECCTTTCSTHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 5999999999999988554
No 386
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=83.02 E-value=0.38 Score=38.59 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 29 ~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 29 AGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEBTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999754
No 387
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=82.98 E-value=0.44 Score=40.28 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 35 vG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 35 VGKTGAGKSATGNSILGR 52 (239)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 599999999999998753
No 388
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=82.96 E-value=0.33 Score=47.60 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.4
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|||||||..-|+.-+.
T Consensus 387 vG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp ECCTTSSTTHHHHHHTTSSC
T ss_pred ECCCCCcHHHHHHHHhcCcC
Confidence 59999999999999987653
No 389
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=82.94 E-value=0.4 Score=38.31 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|+..
T Consensus 10 vG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 10 AGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EESTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999864
No 390
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=82.93 E-value=0.46 Score=37.63 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 10 ~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 10 VGADGVGKSALTIQLIQN 27 (189)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999854
No 391
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=82.92 E-value=0.31 Score=47.48 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=17.5
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|||||||..-|+.-+.
T Consensus 375 vG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 375 VGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EECTTSSHHHHHHHHTTTTC
T ss_pred ECCCCCCHHHHHHHHhhccC
Confidence 59999999999999987653
No 392
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=82.91 E-value=0.49 Score=37.15 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 12 ~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 12 LGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp ECCTTSSHHHHHHHHHGG
T ss_pred ECcCCCCHHHHHHHHHhC
Confidence 599999999999999854
No 393
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=82.86 E-value=0.44 Score=37.38 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=15.0
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+|++|+|||+|...|..
T Consensus 15 ~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 15 IGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp ECCTTSCHHHHHHHHCS
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 59999999999988864
No 394
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=82.79 E-value=0.4 Score=38.24 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 29 ~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 29 VGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEBTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999998754
No 395
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=82.76 E-value=0.47 Score=37.26 Aligned_cols=18 Identities=33% Similarity=0.363 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 14 ~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 14 MGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp ESCTTTTHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999753
No 396
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=82.65 E-value=0.42 Score=37.41 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.7
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|||||+|...|...
T Consensus 20 ~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 20 LGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999743
No 397
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=82.59 E-value=0.4 Score=37.22 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=14.4
Q ss_pred CCCCcCchhHHHHHHH
Q 044048 1 MGATATGKTKLSIDLA 16 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA 16 (269)
+|++|+|||+|...|.
T Consensus 8 vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 8 LGAPGVGKSALARIFG 23 (166)
T ss_dssp EESTTSSHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHc
Confidence 5999999999998885
No 398
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=82.49 E-value=7.4 Score=44.83 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=35.7
Q ss_pred CCCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
+|+.||||++|+.-.|--.+.++... .....|+..+|.++.+..+...
T Consensus 1615 vGvgGsGkqSltrLaa~i~~~~~fqi--------------------------------~~~~~Y~~~~f~eDLk~l~~~a 1662 (2695)
T 4akg_A 1615 IGASRTGKTILTRFVAWLNGLKIVQP--------------------------------KIHRHSNLSDFDMILKKAISDC 1662 (2695)
T ss_dssp ECTTTSCHHHHHHHHHHHTTCEEECC--------------------------------CCCTTCCHHHHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHhCCeeEEE--------------------------------EeeCCCCHHHHHHHHHHHHHHc
Confidence 59999999999877665556565442 1234699999999988877654
No 399
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=82.45 E-value=0.53 Score=36.60 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.6
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 13 ~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 13 LGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999653
No 400
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=82.41 E-value=0.64 Score=40.44 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=15.6
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
.+|||||||..+...+...+
T Consensus 37 ~~~TGsGKT~~~~~~~~~~~ 56 (337)
T 2z0m_A 37 RAKTGSGKTAAYAIPILELG 56 (337)
T ss_dssp ECCTTSSHHHHHHHHHHHHT
T ss_pred EcCCCCcHHHHHHHHHHhhc
Confidence 37999999998777766554
No 401
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=82.32 E-value=0.38 Score=42.88 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||...|+...
T Consensus 175 ~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTC
T ss_pred ECCCCCcHHHHHHHhcccc
Confidence 5999999999999998654
No 402
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=82.30 E-value=0.52 Score=40.57 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=17.3
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||.|||||+.++.+|.++
T Consensus 34 tG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 34 CGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 4899999999999999876
No 403
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=82.28 E-value=0.73 Score=41.56 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=22.4
Q ss_pred CCCcCchhHHHHHHHHHc---C--CeeeeCCc
Q 044048 2 GATATGKTKLSIDLAIHF---S--GEAINSDK 28 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~---~--~eiIs~Ds 28 (269)
|-.|+|||++|..||..+ | .-+|++|.
T Consensus 26 gkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 26 GKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp CSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 778999999999999876 2 35889985
No 404
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=82.25 E-value=0.35 Score=47.30 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.5
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|||||||..-|+.-+.
T Consensus 376 vG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp ECCTTSSSTHHHHHHTTSSC
T ss_pred ECCCCCCHHHHHHHHhcCcC
Confidence 59999999999999987653
No 405
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=82.22 E-value=0.54 Score=36.74 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 21 ~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 21 IGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 406
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=82.21 E-value=0.52 Score=37.17 Aligned_cols=18 Identities=22% Similarity=0.553 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 24 ~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 24 VGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhhC
Confidence 599999999999999854
No 407
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=82.20 E-value=0.54 Score=37.22 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 17 ~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 17 LGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 408
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=82.18 E-value=0.47 Score=37.20 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 15 ~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 15 VGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EECTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999865
No 409
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=82.16 E-value=0.62 Score=43.34 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.9
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
.+|||||||..++.++..++.
T Consensus 114 ~~~TGsGKT~~~l~~i~~~~~ 134 (472)
T 2fwr_A 114 VLPTGSGKTHVAMAAINELST 134 (472)
T ss_dssp ECCTTSCHHHHHHHHHHHHCS
T ss_pred EeCCCCCHHHHHHHHHHHcCC
Confidence 389999999999998887754
No 410
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=82.15 E-value=0.76 Score=38.52 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=21.1
Q ss_pred CCcCchhHHHHHHHHHcCC------eeeeCCcc
Q 044048 3 ATATGKTKLSIDLAIHFSG------EAINSDKI 29 (269)
Q Consensus 3 pTgsGKS~la~~LA~~~~~------eiIs~Ds~ 29 (269)
-.|+|||++|..||..+.- -+|.+|.-
T Consensus 13 kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 13 KGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp STTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4699999999999987642 37888853
No 411
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=82.07 E-value=0.45 Score=45.08 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|||||||...|+..
T Consensus 48 vG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 48 VGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp ECSTTSSSHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCc
Confidence 599999999999998864
No 412
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=81.96 E-value=0.48 Score=45.97 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 53 vG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999654
No 413
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=81.82 E-value=0.49 Score=45.54 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||...|+--+
T Consensus 35 iG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 35 SGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 5999999999999998754
No 414
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=81.69 E-value=0.46 Score=37.75 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 7 ~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 7 AGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEBTTSSHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhCc
Confidence 599999999999998753
No 415
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=81.66 E-value=0.58 Score=37.21 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=16.2
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 13 ~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 13 LGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999865
No 416
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=81.62 E-value=0.56 Score=44.36 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|++|+|||+|+.++|...
T Consensus 203 aG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 203 AARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp EECSSSSHHHHHHHHHHHH
T ss_pred EeCCCCChHHHHHHHHHHH
Confidence 4899999999999998764
No 417
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=81.53 E-value=0.59 Score=36.78 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 18 ~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 18 LGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp ECCTTSCHHHHHHHHHHC
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999998754
No 418
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=81.52 E-value=0.56 Score=37.14 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 24 ~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 24 VGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999998854
No 419
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=81.51 E-value=0.6 Score=37.50 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 31 ~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 31 IGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp ESSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHhcC
Confidence 599999999999998864
No 420
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=81.44 E-value=0.6 Score=36.82 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=15.7
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 11 ~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 11 VGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999988753
No 421
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=81.40 E-value=0.71 Score=41.43 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=22.1
Q ss_pred CCCcCchhHHHHHHHHHc-----CCeeeeCCc
Q 044048 2 GATATGKTKLSIDLAIHF-----SGEAINSDK 28 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~-----~~eiIs~Ds 28 (269)
|-.|+|||++|..||..+ ..-+|++|.
T Consensus 21 gKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 21 GKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 678999999999998765 245888886
No 422
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=81.24 E-value=0.66 Score=42.51 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.6
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+||.|+|||||...|+.....
T Consensus 77 iG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EECTTSSHHHHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHhcCCCC
Confidence 599999999999999988754
No 423
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=81.07 E-value=0.55 Score=43.42 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.4
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|+|||||...|+-..
T Consensus 221 vG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCS
T ss_pred ECCCCccHHHHHHHHhccc
Confidence 5999999999999998543
No 424
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.96 E-value=0.59 Score=42.83 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|++|+|||+|+..+|...
T Consensus 52 aG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 52 GARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp EECTTSCHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 4899999999999998764
No 425
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=80.93 E-value=0.34 Score=47.42 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.3
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|||||||..-|+.-+.
T Consensus 375 vG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSSC
T ss_pred ECCCCCCHHHHHHHHhCCcc
Confidence 59999999999998887653
No 426
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=80.87 E-value=0.28 Score=47.79 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=16.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+.-+
T Consensus 373 vG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCChHHHHHHHHhcCC
Confidence 5999999999998887655
No 427
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=80.84 E-value=0.61 Score=37.62 Aligned_cols=18 Identities=22% Similarity=0.553 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|||||+|...|...
T Consensus 20 ~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 20 VGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999998754
No 428
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=80.73 E-value=0.54 Score=37.27 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|||||+|...|...
T Consensus 16 ~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 16 IGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999754
No 429
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=80.69 E-value=0.45 Score=42.43 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=15.2
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+||+|+|||||...|+.
T Consensus 24 vG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 24 VGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEETTSSHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 59999999999999874
No 430
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.66 E-value=0.67 Score=36.43 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 16 ~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 16 VGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHhC
Confidence 599999999999998754
No 431
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=80.64 E-value=0.97 Score=39.53 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCCcCchhHHHHHHHHHc-----CCeeeeCCccc
Q 044048 2 GATATGKTKLSIDLAIHF-----SGEAINSDKIQ 30 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~-----~~eiIs~Ds~Q 30 (269)
+-.|+|||++|..||..+ ..-+|.+|..|
T Consensus 12 ~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q 45 (286)
T 2xj4_A 12 EKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQ 45 (286)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 457999999999999876 34578888754
No 432
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=80.63 E-value=0.89 Score=41.39 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.4
Q ss_pred CCCcCchhHHHHHHHHHc-----CCeeeeCCc
Q 044048 2 GATATGKTKLSIDLAIHF-----SGEAINSDK 28 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~-----~~eiIs~Ds 28 (269)
|-.|+|||++|..||..+ ..-+|++|-
T Consensus 33 gKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 33 GKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 678999999999998875 345888886
No 433
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=80.61 E-value=0.51 Score=45.32 Aligned_cols=15 Identities=47% Similarity=0.702 Sum_probs=13.7
Q ss_pred CCCCcCchhHHHHHH
Q 044048 1 MGATATGKTKLSIDL 15 (269)
Q Consensus 1 ~GpTgsGKS~la~~L 15 (269)
+||+|||||||+..+
T Consensus 45 ~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 45 SGTSGTGKTLFSIQF 59 (525)
T ss_dssp EESTTSSHHHHHHHH
T ss_pred EcCCCCCHHHHHHHH
Confidence 599999999999984
No 434
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=80.58 E-value=0.58 Score=37.42 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 13 ~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 13 VGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 435
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=80.54 E-value=0.69 Score=43.51 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=17.1
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||.|||||+++..+++.+
T Consensus 51 ~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 51 NGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 4999999999999998876
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=80.47 E-value=0.71 Score=43.68 Aligned_cols=20 Identities=20% Similarity=0.115 Sum_probs=18.0
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+||+|||||||...||....
T Consensus 163 vG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 163 FAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp EECTTSSHHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcccC
Confidence 59999999999999998865
No 437
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=80.41 E-value=0.66 Score=42.49 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=18.7
Q ss_pred CCCcCchhHHHHHHHHHcCC
Q 044048 2 GATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~ 21 (269)
|+-||||||++..|++.++.
T Consensus 14 G~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 14 GVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp CSTTSSHHHHHHHHHSGGGC
T ss_pred CCCCCCHHHHHHHHHHHhcc
Confidence 89999999999999999865
No 438
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=80.06 E-value=0.7 Score=37.37 Aligned_cols=18 Identities=28% Similarity=0.411 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 14 ~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 14 LGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999998764
No 439
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.02 E-value=0.85 Score=53.08 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=23.6
Q ss_pred CCCCcCchhHHHHHHHHHcCCe--eeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHFSGE--AINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~e--iIs~Ds 28 (269)
.||+|+|||.++.+||+.+|-. ++||+.
T Consensus 610 ~GPaGtGKTet~k~La~~lgr~~~vfnC~~ 639 (3245)
T 3vkg_A 610 FGPAGTGKTETVKALGSQLGRFVLVFCCDE 639 (3245)
T ss_dssp ECSTTSSHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCCCCCHHHHHHHHHHHhCCeEEEEeCCC
Confidence 3999999999999999999865 556643
No 440
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=80.01 E-value=0.72 Score=36.30 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...+...
T Consensus 14 ~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 14 VGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999988754
No 441
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=79.95 E-value=0.64 Score=36.99 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=15.6
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...+...
T Consensus 24 ~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 24 LGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp ECSTTSSHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999988753
No 442
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=79.88 E-value=0.69 Score=36.97 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 22 ~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 22 IGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999998853
No 443
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=79.80 E-value=0.61 Score=36.87 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=15.3
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+|++|+|||+|...|..
T Consensus 12 ~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 12 LGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHc
Confidence 59999999999999984
No 444
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=79.73 E-value=0.93 Score=43.98 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=23.0
Q ss_pred CCCCcCchhHHHHHHHHHc---C--CeeeeCCc
Q 044048 1 MGATATGKTKLSIDLAIHF---S--GEAINSDK 28 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~---~--~eiIs~Ds 28 (269)
.|..|+|||++|..||..+ | .-+|++|-
T Consensus 14 sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 14 TGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3789999999999998876 2 35899994
No 445
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=79.70 E-value=0.57 Score=44.12 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||...|+-..
T Consensus 75 vG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 75 TGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EECTTSSHHHHHHHHHTCC
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999998643
No 446
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=79.68 E-value=0.73 Score=38.44 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCCcCchhHHHHHHHHHcC-----CeeeeCCc
Q 044048 2 GATATGKTKLSIDLAIHFS-----GEAINSDK 28 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~-----~eiIs~Ds 28 (269)
|--|+|||++|..||..+. .-+|.+|.
T Consensus 7 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 7 GKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5679999999999998873 34788886
No 447
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=79.66 E-value=3.1 Score=40.10 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=60.6
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCccceecCCccccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHHH
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLDIATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKII 81 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i~ 81 (269)
|-=||||++....|...++-.-+. -+.+.+||.+|+.. . | |. +....+-
T Consensus 50 G~D~AGKg~~Ik~l~~~l~prg~~----------V~a~~~Pt~~E~~~---~----------y----l~----R~~~~lP 98 (500)
T 3czp_A 50 GIEGAGKGETVKLLNEWMDPRLIE----------VQSFLRPSDEELER---P----------P----QW----RFWRRLP 98 (500)
T ss_dssp ECTTSSHHHHHHHHHHHSCGGGEE----------EEECSSCCHHHHTS---C----------T----TH----HHHHHCC
T ss_pred CcCCCCHHHHHHHHHHhcCccCCe----------EEEeCCCChhhccC---C----------h----hh----hHHHhCC
Confidence 667999999999999998643111 13357899999973 1 1 11 2334455
Q ss_pred hcCCceEEEcccHHHHHHHHc---c-hh-h----------hh-----ccccceEEEEEeCCHHHHHHHHHHHHHH
Q 044048 82 ENGHLPIIVGGSNTYIEALVE---D-SI-I----------NF-----RANYDCCFIWMDVDPLVLYKYVGIRVDK 136 (269)
Q Consensus 82 ~~~~~pIivGGt~~Y~~~ll~---g-~~-~----------~~-----~~~~~~~~~~l~~~~e~L~~Ri~~Rv~~ 136 (269)
.+|.+.|+-.. .|=..+.. | .+ . .| ......+.|||+.++++..+|+.+|.+.
T Consensus 99 ~~G~IvIfdRS--wYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~ 171 (500)
T 3czp_A 99 PKGRTGIFFGN--WYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKD 171 (500)
T ss_dssp CTTCEEEEESC--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC------
T ss_pred CCCeEEEEeCc--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcC
Confidence 67887666644 23333322 1 11 0 01 1245678899999999999999999653
No 448
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=79.66 E-value=0.73 Score=37.68 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=16.2
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 13 vG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 13 VGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999865
No 449
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.63 E-value=0.54 Score=44.76 Aligned_cols=19 Identities=5% Similarity=0.116 Sum_probs=17.0
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.|++|+|||+|+.++|...
T Consensus 248 ~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 248 TSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp EESSCHHHHHHHHHHHHHH
T ss_pred eecCCCCchHHHHHHHHHH
Confidence 4899999999999999865
No 450
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=79.60 E-value=0.65 Score=37.63 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...+...
T Consensus 29 vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 29 LGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 451
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=79.55 E-value=0.76 Score=45.21 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||...|+-.+
T Consensus 51 vG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 51 IGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCTTSCHHHHHHHHHSCC
T ss_pred ECCCCChHHHHHHHHhCCC
Confidence 6999999999999998654
No 452
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=79.43 E-value=0.72 Score=36.92 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 28 vG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 28 IGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999998754
No 453
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=79.34 E-value=0.56 Score=45.57 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||...|+-.+
T Consensus 300 ~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998654
No 454
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=79.28 E-value=0.6 Score=42.69 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=14.4
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+||||+|||++--+|.-
T Consensus 31 ~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 31 IGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999777664
No 455
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=79.25 E-value=0.78 Score=37.20 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 34 ~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 34 AGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ESSTTSSHHHHHHHHHHC
T ss_pred ECcCCCCHHHHHHHHHhC
Confidence 599999999999999754
No 456
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.23 E-value=0.6 Score=44.84 Aligned_cols=19 Identities=42% Similarity=0.410 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||+|+..++...
T Consensus 287 ~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 287 TGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EECTTSSHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 4999999999999998654
No 457
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=79.17 E-value=0.68 Score=44.91 Aligned_cols=19 Identities=32% Similarity=0.233 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||...|+-.+
T Consensus 318 ~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 318 VGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999654
No 458
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=79.14 E-value=1.2 Score=37.12 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=21.9
Q ss_pred CCCcCchhHHHHHHHHHc---C--CeeeeCCcc
Q 044048 2 GATATGKTKLSIDLAIHF---S--GEAINSDKI 29 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~---~--~eiIs~Ds~ 29 (269)
+-.|+|||++|..||..+ | .-+|.+|.-
T Consensus 10 ~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 10 GKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 457999999999999876 2 357888864
No 459
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=79.07 E-value=0.8 Score=36.80 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 27 ~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp ESSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHhcC
Confidence 599999999999998754
No 460
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=79.06 E-value=0.8 Score=45.07 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=15.5
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+...++...+
T Consensus 211 ~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 211 HGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 3999999999888776654
No 461
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.03 E-value=0.79 Score=37.01 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 34 ~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 34 FGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999864
No 462
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=79.01 E-value=0.84 Score=36.27 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHHcC
Q 044048 1 MGATATGKTKLSIDLAIHFS 20 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~ 20 (269)
+|++|+|||+|...|...+.
T Consensus 20 vG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 20 YGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp ECSTTSSHHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHHhhcc
Confidence 59999999999876665543
No 463
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=79.01 E-value=0.86 Score=42.42 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=17.6
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+||+|||||+|...++--++.
T Consensus 32 ~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 32 IGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp ECSTTSSHHHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHHhhhcc
Confidence 599999999999988876543
No 464
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=78.99 E-value=0.7 Score=36.41 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...+...
T Consensus 13 vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 13 LGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp ECCGGGCHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999864
No 465
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=78.94 E-value=0.59 Score=44.02 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+||+|+|||||...|+..
T Consensus 37 vG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 37 VGESGLGKSTLINSLFLT 54 (418)
T ss_dssp ECCTTSSHHHHHHHHTTC
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 599999999999988754
No 466
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=78.89 E-value=0.63 Score=42.59 Aligned_cols=20 Identities=30% Similarity=0.179 Sum_probs=15.6
Q ss_pred CCCcCchhHHHHHHHHHcCC
Q 044048 2 GATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~ 21 (269)
|+-||||||++..|++.++.
T Consensus 11 G~dGsGKTT~~~~La~~L~~ 30 (331)
T 1e2k_A 11 GPHGMGKTTTTQLLVALGSR 30 (331)
T ss_dssp SCTTSSHHHHHHHHTC----
T ss_pred CCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999998764
No 467
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=78.74 E-value=0.6 Score=45.36 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||..-|+-.+
T Consensus 31 iGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 31 LGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 5999999999999998654
No 468
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=78.73 E-value=0.78 Score=37.10 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.7
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 14 ~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 14 IGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp ECSTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999998754
No 469
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=78.72 E-value=1.3 Score=37.50 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=21.2
Q ss_pred CCCcCchhHHHHHHHHHc---C--CeeeeCCc
Q 044048 2 GATATGKTKLSIDLAIHF---S--GEAINSDK 28 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~---~--~eiIs~Ds 28 (269)
+-.|+|||++|..||..+ | .-+|.+|.
T Consensus 10 ~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 457999999999999876 2 35788886
No 470
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=78.67 E-value=1.2 Score=38.19 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=22.2
Q ss_pred CCCcCchhHHHHHHHHHc---C--CeeeeCCccc
Q 044048 2 GATATGKTKLSIDLAIHF---S--GEAINSDKIQ 30 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~---~--~eiIs~Ds~Q 30 (269)
+-.|+|||++|..||..+ | .-+|.+|.-.
T Consensus 26 ~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 26 GKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 457999999999999876 2 3477888643
No 471
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=78.67 E-value=0.72 Score=44.25 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=15.2
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+||.|+|||+||.+++.
T Consensus 153 ~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 153 HGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp ECCTTSSHHHHHHHHHC
T ss_pred EcCCCCCHHHHHHHHHh
Confidence 49999999999999964
No 472
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=78.54 E-value=7.2 Score=37.56 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=62.0
Q ss_pred CCCcCchhHHHHHHHHHcCCeeeeCCccceecCCc-cccCCCCHhhhcCCCceecccCCCCCCCCHHHHHHHHHHHHHHH
Q 044048 2 GATATGKTKLSIDLAIHFSGEAINSDKIQVYKGLD-IATNKVTESERQGVPHHLLGFVDPEADYPVEEFCEHALRAIDKI 80 (269)
Q Consensus 2 GpTgsGKS~la~~LA~~~~~eiIs~Ds~QvYk~l~-I~Takpt~~e~~~v~hhl~~~~~~~~~~~~~~f~~~a~~~i~~i 80 (269)
|-=||||++....|...++-. |.. +.+.+||.+|+. |+++ -+....+
T Consensus 307 G~DaAGKg~~Ik~l~~~ldpr-----------g~~V~~~~~Pt~~E~~---~~yl------------------~R~~~~l 354 (500)
T 3czp_A 307 GNDAAGKGGAIRRVTDALDPR-----------QYHIVPIAAPTEEERA---QPYL------------------WRFWRHI 354 (500)
T ss_dssp ESTTSCHHHHHHHHHTTSCGG-----------GCEEEECCSCCHHHHT---SCTT------------------HHHHTTC
T ss_pred ccCCCCHHHHHHHHHHhcCcc-----------CCeEEEeCCCChhhhc---chHH------------------HHHHHhC
Confidence 667999999999999998642 221 346789999985 2221 1122334
Q ss_pred HhcCCceEEEcccHH--HHHHHHcchh-h----------hh-----ccccceEEEEEeCCHHHHHHHHHHHHH
Q 044048 81 IENGHLPIIVGGSNT--YIEALVEDSI-I----------NF-----RANYDCCFIWMDVDPLVLYKYVGIRVD 135 (269)
Q Consensus 81 ~~~~~~pIivGGt~~--Y~~~ll~g~~-~----------~~-----~~~~~~~~~~l~~~~e~L~~Ri~~Rv~ 135 (269)
-.+|.+.|+-...-. -++.+..... . .| ......+.|||+.++++..+|+.+|.+
T Consensus 355 P~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~ 427 (500)
T 3czp_A 355 PARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREK 427 (500)
T ss_dssp CCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence 567776655544311 0111111100 0 11 123466889999999999999999963
No 473
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=78.51 E-value=0.84 Score=36.53 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.7
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 26 ~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 26 IGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999998753
No 474
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.48 E-value=0.73 Score=36.91 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 14 vG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 14 FGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EECTTSSHHHHHHHHHHS
T ss_pred ECCCCCcHHHHHHHHHcC
Confidence 599999999999999763
No 475
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=78.45 E-value=0.73 Score=45.52 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 109 vGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 109 VGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCChHHHHHHHHhcCC
Confidence 5999999999999998654
No 476
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=78.45 E-value=0.84 Score=36.78 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=15.7
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...+...
T Consensus 26 vG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 26 VGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp ECCTTSCHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999888754
No 477
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=78.36 E-value=0.86 Score=36.26 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 21 ~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999754
No 478
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=78.27 E-value=0.39 Score=44.09 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=17.8
Q ss_pred CCCCcCchhHHHHHHHHHcCC
Q 044048 1 MGATATGKTKLSIDLAIHFSG 21 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~~~ 21 (269)
+||+|||||+|...|+--+++
T Consensus 66 vG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 66 TGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EESHHHHHHHHTHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHHHHhCC
Confidence 599999999999888776654
No 479
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=78.19 E-value=0.68 Score=37.12 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=15.7
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 22 vG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 22 LGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EESTTSSHHHHHHHHCCS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999988754
No 480
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=78.17 E-value=0.75 Score=37.07 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 29 vG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 29 LGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EECTTSSHHHHHHHHHHC
T ss_pred ECcCCCCHHHHHHHHhcC
Confidence 599999999999999754
No 481
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=78.16 E-value=0.46 Score=50.97 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=17.2
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||||||||||..-|.+-+
T Consensus 1111 VG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCChHHHHHHHHhcCc
Confidence 6999999999999998765
No 482
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=78.12 E-value=0.48 Score=37.45 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.1
Q ss_pred CCCCcCchhHHHHHHH
Q 044048 1 MGATATGKTKLSIDLA 16 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA 16 (269)
+|++|+|||+|...+.
T Consensus 24 ~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 24 LGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEETTSSHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHh
Confidence 5999999999998775
No 483
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=78.11 E-value=0.83 Score=37.07 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 26 ~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 26 IGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp ECSTTSSHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999998753
No 484
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=78.09 E-value=0.88 Score=36.65 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...+...
T Consensus 27 vG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 27 LGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCcHHHHHHHHHhC
Confidence 599999999999998764
No 485
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=78.08 E-value=0.76 Score=45.34 Aligned_cols=19 Identities=32% Similarity=0.233 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||...|+-.+
T Consensus 388 ~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999654
No 486
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=77.99 E-value=0.65 Score=45.83 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=16.8
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||+|||||||..-|+-.+
T Consensus 123 iG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 123 VGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCChHHHHHHHHhCCC
Confidence 5999999999999998654
No 487
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=77.96 E-value=0.78 Score=37.29 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 14 ~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 14 IGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EESTTSSHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999998754
No 488
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=77.85 E-value=1.1 Score=36.43 Aligned_cols=16 Identities=31% Similarity=0.059 Sum_probs=11.9
Q ss_pred CCCCcCchhHHHHHHH
Q 044048 1 MGATATGKTKLSIDLA 16 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA 16 (269)
.+|||||||..+...+
T Consensus 44 ~~~TGsGKT~~~~~~~ 59 (207)
T 2gxq_A 44 QARTGTGKTLAFALPI 59 (207)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHH
Confidence 3799999998754443
No 489
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=77.84 E-value=0.81 Score=36.96 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.1
Q ss_pred CCCCcCchhHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAI 17 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~ 17 (269)
+|++|+|||+|...|..
T Consensus 32 vG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 32 IGSRGVGKTSLMERFTD 48 (192)
T ss_dssp ECSTTSSHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 59999999999998864
No 490
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.72 E-value=0.84 Score=36.66 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.6
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+|++|+|||+|...|....
T Consensus 29 ~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 29 IGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EESTTSSHHHHHHHHHHHT
T ss_pred ECCCCcCHHHHHHHHhcCC
Confidence 5999999999999998653
No 491
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=77.41 E-value=0.88 Score=39.06 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.7
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|.||+|||+|.-.|...
T Consensus 27 vG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 27 VGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp ESSTTSSHHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 599999999999888754
No 492
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=77.33 E-value=4 Score=37.02 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHcchhhhhccccceEEEEEeCC
Q 044048 63 DYPVEEFCEHALRAIDKIIENGHLPIIVGGSNTYIEALVEDSIINFRANYDCCFIWMDVD 122 (269)
Q Consensus 63 ~~~~~~f~~~a~~~i~~i~~~~~~pIivGGt~~Y~~~ll~g~~~~~~~~~~~~~~~l~~~ 122 (269)
..+..+..+...+.+.++.++|+.||+.||.+.---..+.+. ...++..++|+|+-
T Consensus 95 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~al----~~~~~l~vI~~DAH 150 (326)
T 3niq_A 95 PIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRAL----GRERPLGMVHFDAH 150 (326)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH----TSSSCEEEEEECSS
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhhHHHHHHH----HhhCCeeEEEccCc
Confidence 357788888888899999999999999999987544444432 22236778888653
No 493
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=77.29 E-value=0.8 Score=36.60 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|||||+|...|...
T Consensus 22 ~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 22 VGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EESTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999843
No 494
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=77.25 E-value=0.98 Score=44.38 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=16.1
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
.||+|||||+++..++..+
T Consensus 201 ~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 201 QGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 3999999999988887654
No 495
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=77.16 E-value=0.84 Score=37.06 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 30 vG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCcCHHHHHHHHHhC
Confidence 599999999999999864
No 496
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=77.09 E-value=1 Score=37.32 Aligned_cols=27 Identities=22% Similarity=0.105 Sum_probs=20.5
Q ss_pred CCcCchhHHHHHHHHHc---CCeeeeCCcc
Q 044048 3 ATATGKTKLSIDLAIHF---SGEAINSDKI 29 (269)
Q Consensus 3 pTgsGKS~la~~LA~~~---~~eiIs~Ds~ 29 (269)
-+|+|||+++..||..+ |-.+.-.|..
T Consensus 10 kgGvGKTt~a~nLa~~la~~G~rVll~dp~ 39 (224)
T 1byi_A 10 DTEVGKTVASCALLQAAKAAGYRTAGYKPV 39 (224)
T ss_dssp STTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcce
Confidence 37999999999999876 4455556753
No 497
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=76.93 E-value=1 Score=36.18 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.9
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 28 ~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999754
No 498
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=76.86 E-value=0.87 Score=44.97 Aligned_cols=19 Identities=47% Similarity=0.457 Sum_probs=16.9
Q ss_pred CCCCcCchhHHHHHHHHHc
Q 044048 1 MGATATGKTKLSIDLAIHF 19 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~~ 19 (269)
+||.|||||||..-|+--+
T Consensus 384 iG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 384 MGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp ESCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 5999999999999998654
No 499
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=76.80 E-value=1 Score=36.20 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=16.0
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...+...
T Consensus 29 vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 29 VGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHhcC
Confidence 599999999999998864
No 500
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=76.71 E-value=0.82 Score=39.04 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.8
Q ss_pred CCCCcCchhHHHHHHHHH
Q 044048 1 MGATATGKTKLSIDLAIH 18 (269)
Q Consensus 1 ~GpTgsGKS~la~~LA~~ 18 (269)
+|++|+|||+|...|...
T Consensus 28 vG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 28 VGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EECTTSCHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999998743
Done!