Query 044049
Match_columns 139
No_of_seqs 102 out of 1030
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 11:00:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04660 nsLTP_like nsLTP_like: 99.6 2.7E-16 5.9E-21 104.4 5.3 73 42-120 1-73 (73)
2 cd01960 nsLTP1 nsLTP1: Non-spe 99.6 3.5E-16 7.5E-21 107.2 5.4 73 41-116 2-80 (89)
3 PF14368 LTP_2: Probable lipid 99.6 6.6E-17 1.4E-21 110.8 0.3 78 39-120 19-96 (96)
4 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 1.3E-14 2.8E-19 93.0 4.5 62 49-112 1-63 (63)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.3 9.4E-13 2E-17 86.3 4.1 61 47-115 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.2 8.7E-11 1.9E-15 76.3 6.0 72 42-116 1-76 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.8 3.7E-10 7.9E-15 76.7 -1.9 67 47-120 13-90 (90)
8 PF14547 Hydrophob_seed: Hydro 97.8 9.7E-06 2.1E-10 55.6 1.3 79 42-121 2-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 97.7 4.3E-05 9.2E-10 52.4 4.0 79 41-120 3-85 (85)
10 PF07172 GRP: Glycine rich pro 79.0 2.4 5.1E-05 29.5 2.9 16 1-17 1-16 (95)
11 cd00261 AAI_SS AAI_SS: Alpha-A 52.9 7.1 0.00015 26.9 1.0 64 48-114 14-104 (110)
12 PLN00213 predicted protein; Pr 30.5 78 0.0017 22.9 3.4 44 38-86 44-91 (118)
13 PF08120 Toxin_32: Tamulustoxi 24.2 33 0.00071 19.1 0.4 8 128-135 13-20 (35)
14 PF15284 PAGK: Phage-encoded v 24.2 1E+02 0.0023 19.8 2.8 20 1-21 1-20 (61)
15 TIGR03769 P_ac_wall_RPT actino 20.9 51 0.0011 19.2 0.8 11 128-138 9-19 (41)
No 1
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.64 E-value=2.7e-16 Score=104.43 Aligned_cols=73 Identities=22% Similarity=0.628 Sum_probs=61.2
Q ss_pred CHhhhhcccccHHHhhCCCCCCCCChhHHHHHHhhhccCcccccccccccccCCCCCCHHHHHHhhhhcCCCCCCCCCC
Q 044049 42 CSEVIYNLSDCLDFLSKGSNHTKPGSNCCSGFESVIKSNFHCICEAIKSSSDLGLDLNLTRAFTLSSDCAISAPPLKKC 120 (139)
Q Consensus 42 C~~~~~~L~pCl~yl~~~~~~~~Ps~~CC~alk~l~~~~~~CLC~~i~~~~~~~~~in~~ra~~LP~~Cgv~~p~~~~C 120 (139)
|...+..|.+|++|++++++...|++.||++++++ +++|+|.+++... +. .||.+||.+||+.||+++|+ ++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~~-~~-~i~~~~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSLV-LQ-IIDPDKAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCCc-cc-ccCHHHHHHHHHHcCCCCCC-CCC
Confidence 55667789999999998643457999999999985 7789999987543 33 59999999999999999998 887
No 2
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.63 E-value=3.5e-16 Score=107.18 Aligned_cols=73 Identities=34% Similarity=0.702 Sum_probs=63.7
Q ss_pred CCHhhhhcccccHHHhhCCCCCCCCChhHHHHHHhhhcc-----CcccccccccccccCCCC-CCHHHHHHhhhhcCCCC
Q 044049 41 DCSEVIYNLSDCLDFLSKGSNHTKPGSNCCSGFESVIKS-----NFHCICEAIKSSSDLGLD-LNLTRAFTLSSDCAISA 114 (139)
Q Consensus 41 ~C~~~~~~L~pCl~yl~~~~~~~~Ps~~CC~alk~l~~~-----~~~CLC~~i~~~~~~~~~-in~~ra~~LP~~Cgv~~ 114 (139)
+|.+++..|.||++|+++++ ..|++.||++++++++. +++|+|+++++.. .++. ||.+|+++||++||+++
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~--~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~-~~~~~i~~~~a~~LP~~C~v~~ 78 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGG--PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAA-AGISGLNPGRAAGLPGKCGVSI 78 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCC--CCCChHHhhhhHHHhhccCCCCchhhhhhcccccc-cccCCCCHHHHHhChHhcccCC
Confidence 69999999999999999863 68999999999999764 6789999998765 3554 99999999999999998
Q ss_pred CC
Q 044049 115 PP 116 (139)
Q Consensus 115 p~ 116 (139)
++
T Consensus 79 ~~ 80 (89)
T cd01960 79 PY 80 (89)
T ss_pred CC
Confidence 75
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.62 E-value=6.6e-17 Score=110.77 Aligned_cols=78 Identities=29% Similarity=0.793 Sum_probs=49.5
Q ss_pred CCCCHhhhhcccccHHHhhCCCCCCCCChhHHHHHHhhhccCcccccccccccccCCCCCCHHHHHHhhhhcCCCCCCCC
Q 044049 39 SGDCSEVIYNLSDCLDFLSKGSNHTKPGSNCCSGFESVIKSNFHCICEAIKSSSDLGLDLNLTRAFTLSSDCAISAPPLK 118 (139)
Q Consensus 39 ~~~C~~~~~~L~pCl~yl~~~~~~~~Ps~~CC~alk~l~~~~~~CLC~~i~~~~~~~~~in~~ra~~LP~~Cgv~~p~~~ 118 (139)
..+|.+.+....+|..|+++ ...|++.||++++++.+.++.|||+++++....+++||.+|+..||++||+++++ +
T Consensus 19 ~~~c~~~l~~c~~~~~~~~~---~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~~-~ 94 (96)
T PF14368_consen 19 CCSCANSLLPCCPCLCYVTG---GPAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVPP-S 94 (96)
T ss_dssp TTB-HCCCCHH--HHHHHCC--------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S---
T ss_pred cchhHHHHhccccchhccCC---CCCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCCC-C
Confidence 56786643333344888874 3689999999999998889999999998865235689999999999999999988 7
Q ss_pred CC
Q 044049 119 KC 120 (139)
Q Consensus 119 ~C 120 (139)
+|
T Consensus 95 ~C 96 (96)
T PF14368_consen 95 KC 96 (96)
T ss_dssp --
T ss_pred CC
Confidence 77
No 4
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.52 E-value=1.3e-14 Score=93.04 Aligned_cols=62 Identities=44% Similarity=0.899 Sum_probs=53.4
Q ss_pred ccccHHHhhCCCCCCCCChhHHHHHHhhhccCcccccccccccccCCCCC-CHHHHHHhhhhcCC
Q 044049 49 LSDCLDFLSKGSNHTKPGSNCCSGFESVIKSNFHCICEAIKSSSDLGLDL-NLTRAFTLSSDCAI 112 (139)
Q Consensus 49 L~pCl~yl~~~~~~~~Ps~~CC~alk~l~~~~~~CLC~~i~~~~~~~~~i-n~~ra~~LP~~Cgv 112 (139)
|.||++|+++++ ..|++.||++++++.+.++.|||+++++......++ |.+++..||++||+
T Consensus 1 L~~C~~y~~~~~--~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGA--TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCC--CCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 579999999753 689999999999999889999999999866423345 79999999999996
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.34 E-value=9.4e-13 Score=86.27 Aligned_cols=61 Identities=28% Similarity=0.597 Sum_probs=52.8
Q ss_pred hcccccHHHhhCCCCCCCCChhHHHHHHhhhccCcccccccccccccCCCCCCHHHHHHhhhhcCCCCC
Q 044049 47 YNLSDCLDFLSKGSNHTKPGSNCCSGFESVIKSNFHCICEAIKSSSDLGLDLNLTRAFTLSSDCAISAP 115 (139)
Q Consensus 47 ~~L~pCl~yl~~~~~~~~Ps~~CC~alk~l~~~~~~CLC~~i~~~~~~~~~in~~ra~~LP~~Cgv~~p 115 (139)
.+|.+|++|++++ .+||++||+.+|+. ..|||++++++. ++..||.++|++|++.||+++|
T Consensus 4 ~~L~~C~~ai~~~---~~Ps~~CC~~Lk~~----~~CLC~y~~~p~-l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGG---SPPSAACCAKLKEQ----QSCLCQYAKNPS-LKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCC---CCCCHHHHHHHhcC----CCCeeeeecCcc-HHhhcCcHHHHHHHHHcCCCCC
Confidence 4799999999975 58999999999983 389999998765 4556999999999999999986
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.16 E-value=8.7e-11 Score=76.32 Aligned_cols=72 Identities=31% Similarity=0.707 Sum_probs=59.2
Q ss_pred CHhhhhcccccHHHhhCCCCCCCCChhHHHHHHhhhccCcccccccccccccCCCC----CCHHHHHHhhhhcCCCCCC
Q 044049 42 CSEVIYNLSDCLDFLSKGSNHTKPGSNCCSGFESVIKSNFHCICEAIKSSSDLGLD----LNLTRAFTLSSDCAISAPP 116 (139)
Q Consensus 42 C~~~~~~L~pCl~yl~~~~~~~~Ps~~CC~alk~l~~~~~~CLC~~i~~~~~~~~~----in~~ra~~LP~~Cgv~~p~ 116 (139)
|.+.+.++.+|.+|+++......|+..||++++++. +..|+|..++.... .+. ++..++..||+.||+..++
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~-~~~~~~~~~~~~a~~lp~~C~~~~~~ 76 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVL-GILEIPGVNAQNAASLPSACGVPPPY 76 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccc-cccchhhhhHHHHHhhHHhcCCCCCC
Confidence 667777888999999875224689999999999986 78899999887542 332 6999999999999999864
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.80 E-value=3.7e-10 Score=76.70 Aligned_cols=67 Identities=33% Similarity=0.726 Sum_probs=55.2
Q ss_pred hcccccHHHhhCCCCCCCCChhHHHHHHhhhccCcccccccccccccCC-----------CCCCHHHHHHhhhhcCCCCC
Q 044049 47 YNLSDCLDFLSKGSNHTKPGSNCCSGFESVIKSNFHCICEAIKSSSDLG-----------LDLNLTRAFTLSSDCAISAP 115 (139)
Q Consensus 47 ~~L~pCl~yl~~~~~~~~Ps~~CC~alk~l~~~~~~CLC~~i~~~~~~~-----------~~in~~ra~~LP~~Cgv~~p 115 (139)
..+.+|..|++++. ..|+..||++|+++ ++.|.|..|+.... + ..++..+|..||+.||+.++
T Consensus 13 ~~l~~c~~~~~~~~--~~~~~~CC~~L~~l---~~~C~C~~i~~~~~-~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~ 86 (90)
T PF00234_consen 13 VRLSPCLPYLQGGC--QQPSQQCCQQLRQL---DPQCRCEAIRQMVR-QVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPP 86 (90)
T ss_dssp SHHHGGHHHHTTSS--SHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred ccccccHHHHhccc--ccchHHHhHHHHHH---hHHhhCHHHHHHHH-hhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCC
Confidence 34899999999752 47899999999998 88999999986542 3 26899999999999999987
Q ss_pred CCCCC
Q 044049 116 PLKKC 120 (139)
Q Consensus 116 ~~~~C 120 (139)
+ .+|
T Consensus 87 ~-~~C 90 (90)
T PF00234_consen 87 Y-TDC 90 (90)
T ss_dssp S-S-G
T ss_pred C-CCC
Confidence 6 444
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=97.77 E-value=9.7e-06 Score=55.60 Aligned_cols=79 Identities=27% Similarity=0.550 Sum_probs=58.2
Q ss_pred CHhhhhcccccHHHhhCC--CCCCCCChhHHHHHHhhhccCc-ccccccccccccCC-CCCCHHHHHH-hhhhcCCCCCC
Q 044049 42 CSEVIYNLSDCLDFLSKG--SNHTKPGSNCCSGFESVIKSNF-HCICEAIKSSSDLG-LDLNLTRAFT-LSSDCAISAPP 116 (139)
Q Consensus 42 C~~~~~~L~pCl~yl~~~--~~~~~Ps~~CC~alk~l~~~~~-~CLC~~i~~~~~~~-~~in~~ra~~-LP~~Cgv~~p~ 116 (139)
|..+..+|.-|.+.+... ....++...||+-++.+.+.|. .|||..++.+. ++ +++|....++ |-..||...|.
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~v-lg~i~~~ipv~l~~lln~CGk~~p~ 80 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANV-LGLINVNIPVALNLLLNACGKTVPS 80 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhc-ccccccccccHHHHHHHHhCCcCcC
Confidence 555556788898888211 0123578899999999987764 79999999765 56 5666665665 57889999998
Q ss_pred CCCCC
Q 044049 117 LKKCG 121 (139)
Q Consensus 117 ~~~C~ 121 (139)
+++|.
T Consensus 81 gf~C~ 85 (85)
T PF14547_consen 81 GFTCP 85 (85)
T ss_pred CCcCC
Confidence 88883
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=97.73 E-value=4.3e-05 Score=52.42 Aligned_cols=79 Identities=27% Similarity=0.552 Sum_probs=60.2
Q ss_pred CCHhhhhcccccHHHhhCCC--CCCCCChhHHHHHHhhhccCc-ccccccccccccCCCCCCHHHHHHh-hhhcCCCCCC
Q 044049 41 DCSEVIYNLSDCLDFLSKGS--NHTKPGSNCCSGFESVIKSNF-HCICEAIKSSSDLGLDLNLTRAFTL-SSDCAISAPP 116 (139)
Q Consensus 41 ~C~~~~~~L~pCl~yl~~~~--~~~~Ps~~CC~alk~l~~~~~-~CLC~~i~~~~~~~~~in~~ra~~L-P~~Cgv~~p~ 116 (139)
.|..+..+|.-|.+-+..-. ....|..+||+-++.+.+.|. .|||..++.+. +++.+|..-.+.+ -..||...|.
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~-lgi~~~~pv~l~llln~CGk~~P~ 81 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANI-LGISINIPVALSLLLNSCGRNVPP 81 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeeccc-cCcccccChhHHHHHHHHcCcCCC
Confidence 46666667888888874211 124677899999999988774 79999999765 6777777777775 6689999998
Q ss_pred CCCC
Q 044049 117 LKKC 120 (139)
Q Consensus 117 ~~~C 120 (139)
+++|
T Consensus 82 gf~C 85 (85)
T cd01958 82 GFTC 85 (85)
T ss_pred CCcC
Confidence 8887
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=79.01 E-value=2.4 Score=29.48 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=9.6
Q ss_pred ChhhhHHHHHHHHHHHH
Q 044049 1 MEKTARVLFIACILVAW 17 (139)
Q Consensus 1 m~~~~~~~~~~~~~vv~ 17 (139)
|+ ++..+||+|+|+++
T Consensus 1 Ma-SK~~llL~l~LA~l 16 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAAL 16 (95)
T ss_pred Cc-hhHHHHHHHHHHHH
Confidence 88 55566666654443
No 11
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=52.91 E-value=7.1 Score=26.92 Aligned_cols=64 Identities=20% Similarity=0.448 Sum_probs=42.3
Q ss_pred cccccHHHhhCCC-CC-----------CCCChhHHHHHHhhhccCccccccccccccc---CC------------CCCCH
Q 044049 48 NLSDCLDFLSKGS-NH-----------TKPGSNCCSGFESVIKSNFHCICEAIKSSSD---LG------------LDLNL 100 (139)
Q Consensus 48 ~L~pCl~yl~~~~-~~-----------~~Ps~~CC~alk~l~~~~~~CLC~~i~~~~~---~~------------~~in~ 100 (139)
.|.+|..|+.-.. .. ......||..++.+ +..|-|..|..... .. ...-.
T Consensus 14 ~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (110)
T cd00261 14 PLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMR 90 (110)
T ss_pred cCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHH
Confidence 5788998885321 00 01237799999998 68899998864321 00 01334
Q ss_pred HHHHHhhhhcCCCC
Q 044049 101 TRAFTLSSDCAISA 114 (139)
Q Consensus 101 ~ra~~LP~~Cgv~~ 114 (139)
..|..||..||+..
T Consensus 91 ~~a~~Lp~~C~~~~ 104 (110)
T cd00261 91 QAAQNLPSMCNLYP 104 (110)
T ss_pred HHHHhhchhcCCCC
Confidence 57888999999986
No 12
>PLN00213 predicted protein; Provisional
Probab=30.54 E-value=78 Score=22.94 Aligned_cols=44 Identities=23% Similarity=0.646 Sum_probs=29.7
Q ss_pred CCCCCHhhhhcccccHHHhh----CCCCCCCCChhHHHHHHhhhccCcccccc
Q 044049 38 PSGDCSEVIYNLSDCLDFLS----KGSNHTKPGSNCCSGFESVIKSNFHCICE 86 (139)
Q Consensus 38 ~~~~C~~~~~~L~pCl~yl~----~~~~~~~Ps~~CC~alk~l~~~~~~CLC~ 86 (139)
+...|-..+.++--|..-+. .+ .-...+..||.++.+. | .|.=+
T Consensus 44 d~~kCwSSl~~vpGCv~EI~~si~~g-kf~~Ig~aCCKAf~~~---d-nCwP~ 91 (118)
T PLN00213 44 DITKCFSSVMDIPGCIAEISQSIFTG-KFGNLGPACCKAFLDA---D-NCIPK 91 (118)
T ss_pred cHHHHHHHHcCCcchHHHHHHHHHhc-hhcccchHHHHHHHhh---h-ccccC
Confidence 35568888888888876543 22 2347888999998884 4 55544
No 13
>PF08120 Toxin_32: Tamulustoxin family; InterPro: IPR012636 This family consists of the tamulustoxins, which are found in the venom of Mesobuthus tamulus (Eastern Indian scorpion) (Buthus tamulus). Tamulustoxin shares no similarity with other scorpion venom toxins, although the positions of its six cysteine residues suggest that it shares the same structural scaffold. Tamulustoxin acts as a potassium channel blocker [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=24.21 E-value=33 Score=19.14 Aligned_cols=8 Identities=63% Similarity=1.041 Sum_probs=5.8
Q ss_pred CCCCCcee
Q 044049 128 PPSPGTYD 135 (139)
Q Consensus 128 ~~~p~~~~ 135 (139)
-+|||||-
T Consensus 13 rnspgtyg 20 (35)
T PF08120_consen 13 RNSPGTYG 20 (35)
T ss_pred cCCCCchh
Confidence 47888883
No 14
>PF15284 PAGK: Phage-encoded virulence factor
Probab=24.16 E-value=1e+02 Score=19.78 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=10.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHh
Q 044049 1 MEKTARVLFIACILVAWGGGA 21 (139)
Q Consensus 1 m~~~~~~~~~~~~~vv~~~~~ 21 (139)
|.|-+ .+|++++++..+++.
T Consensus 1 Mkk~k-sifL~l~~~LsA~~F 20 (61)
T PF15284_consen 1 MKKFK-SIFLALVFILSAAGF 20 (61)
T ss_pred ChHHH-HHHHHHHHHHHHhhh
Confidence 55444 447666665554433
No 15
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=20.93 E-value=51 Score=19.22 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=9.1
Q ss_pred CCCCCceeeec
Q 044049 128 PPSPGTYDMIY 138 (139)
Q Consensus 128 ~~~p~~~~~~~ 138 (139)
+..||+|.|.+
T Consensus 9 FT~PG~Y~l~~ 19 (41)
T TIGR03769 9 FTKPGTYTLTV 19 (41)
T ss_pred eCCCeEEEEEE
Confidence 67899999875
Done!