Query 044053
Match_columns 327
No_of_seqs 253 out of 1487
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:01:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 4.5E-69 9.8E-74 478.1 29.2 267 11-306 2-268 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 8.9E-68 1.9E-72 469.7 29.7 281 14-306 6-289 (300)
3 COG0667 Tas Predicted oxidored 100.0 5.5E-62 1.2E-66 448.4 29.3 267 12-304 1-311 (316)
4 KOG1575 Voltage-gated shaker-l 100.0 5.8E-62 1.3E-66 440.3 28.6 286 2-311 2-334 (336)
5 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5.8E-60 1.3E-64 427.4 31.3 254 24-305 1-255 (267)
6 PRK10625 tas putative aldo-ket 100.0 1E-58 2.2E-63 434.3 29.8 283 12-304 1-341 (346)
7 TIGR01293 Kv_beta voltage-depe 100.0 1.1E-58 2.4E-63 429.1 28.9 263 14-300 1-316 (317)
8 PRK09912 L-glyceraldehyde 3-ph 100.0 1.8E-58 3.9E-63 432.1 30.5 271 10-303 11-334 (346)
9 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.8E-57 6E-62 411.3 30.3 262 13-306 5-266 (275)
10 PLN02587 L-galactose dehydroge 100.0 3.1E-56 6.6E-61 412.4 28.8 269 14-303 1-301 (314)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 1.8E-55 3.8E-60 402.1 30.3 263 14-300 1-285 (285)
12 PRK10376 putative oxidoreducta 100.0 7.9E-54 1.7E-58 391.8 28.6 252 22-302 14-288 (290)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 5.6E-54 1.2E-58 391.8 25.7 253 28-301 1-282 (283)
14 PRK14863 bifunctional regulato 100.0 1.3E-52 2.9E-57 383.3 22.5 251 22-299 2-279 (292)
15 COG4989 Predicted oxidoreducta 100.0 8.6E-52 1.9E-56 352.7 19.0 268 12-303 1-294 (298)
16 COG1453 Predicted oxidoreducta 100.0 2.9E-47 6.2E-52 342.0 20.2 264 12-303 1-286 (391)
17 KOG1576 Predicted oxidoreducta 100.0 2.8E-45 6E-50 315.1 20.4 261 9-291 19-310 (342)
18 KOG3023 Glutamate-cysteine lig 98.5 3.9E-07 8.6E-12 78.4 7.1 163 60-222 46-227 (285)
19 TIGR00190 thiC thiamine biosyn 92.6 9.6 0.00021 36.2 19.8 142 32-220 68-221 (423)
20 PRK13352 thiamine biosynthesis 91.5 13 0.00029 35.5 19.8 142 31-219 67-223 (431)
21 PF07021 MetW: Methionine bios 91.1 3 6.6E-05 35.6 10.1 103 106-226 61-170 (193)
22 PRK10558 alpha-dehydro-beta-de 90.3 3.1 6.7E-05 37.4 10.1 101 158-287 10-115 (256)
23 PRK10128 2-keto-3-deoxy-L-rham 89.1 5.2 0.00011 36.2 10.6 102 158-287 9-114 (267)
24 TIGR03239 GarL 2-dehydro-3-deo 87.8 6 0.00013 35.4 10.1 99 160-287 5-108 (249)
25 PRK08392 hypothetical protein; 86.6 20 0.00044 31.0 17.1 179 43-256 16-209 (215)
26 cd03319 L-Ala-DL-Glu_epimerase 84.2 34 0.00074 31.5 14.8 150 39-225 134-289 (316)
27 TIGR00381 cdhD CO dehydrogenas 83.0 40 0.00086 32.1 13.2 94 120-226 153-251 (389)
28 PLN02489 homocysteine S-methyl 82.4 43 0.00093 31.3 19.4 168 87-285 131-331 (335)
29 COG2040 MHT1 Homocysteine/sele 80.2 40 0.00087 30.7 11.7 215 39-285 41-296 (300)
30 TIGR02311 HpaI 2,4-dihydroxyhe 79.4 24 0.00052 31.5 10.3 100 159-287 4-108 (249)
31 PF01175 Urocanase: Urocanase; 79.2 27 0.00059 34.3 11.0 129 45-199 106-258 (546)
32 cd01965 Nitrogenase_MoFe_beta_ 78.6 57 0.0012 31.5 13.5 116 62-193 61-187 (428)
33 KOG0259 Tyrosine aminotransfer 78.6 47 0.001 31.6 12.0 50 39-95 79-135 (447)
34 PRK08609 hypothetical protein; 77.7 84 0.0018 31.8 18.0 182 43-256 351-553 (570)
35 PF01964 ThiC: ThiC family; I 75.8 37 0.0008 32.4 10.6 141 38-225 73-225 (420)
36 cd01973 Nitrogenase_VFe_beta_l 75.3 86 0.0019 30.7 14.5 117 60-192 64-192 (454)
37 TIGR01278 DPOR_BchB light-inde 75.1 67 0.0014 31.9 13.0 109 63-191 66-191 (511)
38 PRK04452 acetyl-CoA decarbonyl 74.8 35 0.00077 31.7 10.2 119 111-256 83-206 (319)
39 COG1748 LYS9 Saccharopine dehy 74.7 18 0.00039 34.5 8.5 80 41-132 79-159 (389)
40 PRK05414 urocanate hydratase; 73.6 13 0.00029 36.3 7.3 128 46-199 117-268 (556)
41 TIGR01228 hutU urocanate hydra 73.2 14 0.0003 36.1 7.2 128 46-199 108-259 (545)
42 TIGR02026 BchE magnesium-proto 72.3 67 0.0015 31.8 12.3 127 146-283 219-360 (497)
43 COG1140 NarY Nitrate reductase 70.8 2.6 5.7E-05 39.4 1.8 53 164-217 263-317 (513)
44 PRK13796 GTPase YqeH; Provisio 69.2 1E+02 0.0022 29.1 12.3 121 38-183 54-179 (365)
45 PRK07535 methyltetrahydrofolat 69.1 80 0.0017 28.4 11.0 102 101-223 23-124 (261)
46 PLN02444 HMP-P synthase 67.9 1.4E+02 0.003 30.0 19.2 139 32-219 228-378 (642)
47 cd03174 DRE_TIM_metallolyase D 67.2 48 0.001 29.3 9.3 103 100-222 16-135 (265)
48 cd03316 MR_like Mandelate race 66.0 1.2E+02 0.0025 28.4 16.5 147 39-222 139-298 (357)
49 cd03315 MLE_like Muconate lact 65.8 99 0.0021 27.5 14.8 152 39-226 85-242 (265)
50 PRK00912 ribonuclease P protei 65.0 97 0.0021 27.2 13.3 171 40-257 15-203 (237)
51 TIGR00216 ispH_lytB (E)-4-hydr 64.4 57 0.0012 29.7 9.1 115 157-282 146-273 (280)
52 COG0635 HemN Coproporphyrinoge 64.1 78 0.0017 30.6 10.5 74 99-177 200-276 (416)
53 PRK02910 light-independent pro 62.9 1.7E+02 0.0036 29.2 13.3 142 64-226 67-244 (519)
54 cd07944 DRE_TIM_HOA_like 4-hyd 62.2 1.1E+02 0.0025 27.4 10.7 110 99-221 16-128 (266)
55 PRK01045 ispH 4-hydroxy-3-meth 62.0 51 0.0011 30.3 8.4 107 165-282 156-275 (298)
56 PRK00164 moaA molybdenum cofac 61.7 1.3E+02 0.0029 27.7 16.0 162 38-219 49-227 (331)
57 cd03322 rpsA The starvation se 61.7 1.4E+02 0.0031 28.0 14.9 145 39-224 126-274 (361)
58 PRK07094 biotin synthase; Prov 60.9 1.1E+02 0.0023 28.2 10.6 121 149-284 70-203 (323)
59 PRK05692 hydroxymethylglutaryl 60.8 75 0.0016 29.0 9.4 98 105-220 27-138 (287)
60 PLN02746 hydroxymethylglutaryl 60.4 1.5E+02 0.0033 27.9 11.7 101 103-221 67-181 (347)
61 cd00739 DHPS DHPS subgroup of 59.3 1.3E+02 0.0028 26.9 10.5 66 153-223 63-128 (257)
62 PRK12360 4-hydroxy-3-methylbut 58.8 59 0.0013 29.6 8.2 107 165-282 157-274 (281)
63 KOG0369 Pyruvate carboxylase [ 58.6 1.5E+02 0.0033 30.5 11.3 144 41-226 43-195 (1176)
64 CHL00076 chlB photochlorophyll 58.1 2E+02 0.0044 28.6 13.7 151 57-226 59-249 (513)
65 PF03102 NeuB: NeuB family; I 58.0 76 0.0017 28.2 8.6 115 38-179 53-184 (241)
66 TIGR01496 DHPS dihydropteroate 57.2 1.4E+02 0.0031 26.6 11.4 64 154-223 63-126 (257)
67 TIGR02932 vnfK_nitrog V-contai 56.2 2.1E+02 0.0045 28.1 14.4 119 60-193 67-197 (457)
68 COG0761 lytB 4-Hydroxy-3-methy 55.7 66 0.0014 29.3 7.7 106 166-282 159-277 (294)
69 PRK08195 4-hyroxy-2-oxovalerat 55.2 1.8E+02 0.0039 27.2 11.4 24 38-61 22-45 (337)
70 cd00740 MeTr MeTr subgroup of 55.2 1.6E+02 0.0034 26.4 11.4 105 100-224 23-128 (252)
71 PRK07534 methionine synthase I 54.7 1.9E+02 0.004 27.1 24.2 209 40-286 44-294 (336)
72 COG2987 HutU Urocanate hydrata 54.5 26 0.00056 33.9 5.2 108 66-199 149-268 (561)
73 PF02401 LYTB: LytB protein; 54.1 28 0.00062 31.7 5.3 107 165-282 155-274 (281)
74 cd01968 Nitrogenase_NifE_I Nit 54.0 2.1E+02 0.0045 27.4 13.2 115 59-192 63-188 (410)
75 PRK14017 galactonate dehydrata 54.0 2E+02 0.0043 27.3 12.7 150 39-224 124-288 (382)
76 TIGR00735 hisF imidazoleglycer 54.0 1.6E+02 0.0035 26.1 12.0 64 155-218 188-253 (254)
77 PRK09284 thiamine biosynthesis 53.6 2.5E+02 0.0053 28.2 19.4 140 31-219 222-373 (607)
78 PRK13602 putative ribosomal pr 53.4 47 0.001 24.1 5.5 58 158-222 3-60 (82)
79 PRK05283 deoxyribose-phosphate 53.4 98 0.0021 27.8 8.5 78 39-122 144-227 (257)
80 cd00423 Pterin_binding Pterin 53.3 1.7E+02 0.0036 26.1 14.8 107 101-224 22-129 (258)
81 PRK06361 hypothetical protein; 53.3 1.4E+02 0.0031 25.4 15.3 184 43-261 12-201 (212)
82 COG4943 Predicted signal trans 53.0 97 0.0021 30.5 8.8 119 85-221 350-477 (524)
83 TIGR01928 menC_lowGC/arch o-su 52.4 1.9E+02 0.0042 26.6 15.3 150 39-226 132-285 (324)
84 PRK07945 hypothetical protein; 51.9 2.1E+02 0.0044 26.8 20.9 107 41-172 111-227 (335)
85 cd00308 enolase_like Enolase-s 50.9 1.7E+02 0.0036 25.4 9.8 70 155-226 134-207 (229)
86 PRK13361 molybdenum cofactor b 49.5 2.2E+02 0.0047 26.4 14.5 106 38-166 45-154 (329)
87 COG2069 CdhD CO dehydrogenase/ 49.0 2.2E+02 0.0047 26.2 11.4 101 111-226 158-262 (403)
88 PF11242 DUF2774: Protein of u 48.7 25 0.00054 24.0 3.0 22 241-262 15-36 (63)
89 COG2102 Predicted ATPases of P 48.5 40 0.00087 29.5 5.1 94 150-254 74-177 (223)
90 KOG0023 Alcohol dehydrogenase, 47.8 67 0.0014 29.9 6.6 147 11-218 173-324 (360)
91 cd01974 Nitrogenase_MoFe_beta 46.9 2.8E+02 0.006 26.9 13.6 117 60-192 63-191 (435)
92 cd07948 DRE_TIM_HCS Saccharomy 46.1 2.2E+02 0.0048 25.5 10.5 94 106-222 24-132 (262)
93 COG3623 SgaU Putative L-xylulo 45.5 36 0.00077 30.1 4.3 72 19-95 65-155 (287)
94 COG1149 MinD superfamily P-loo 44.8 47 0.001 30.1 5.1 50 175-226 201-250 (284)
95 PRK07328 histidinol-phosphatas 44.5 2.3E+02 0.005 25.3 15.5 65 105-173 93-161 (269)
96 cd01981 Pchlide_reductase_B Pc 44.2 3E+02 0.0065 26.5 13.7 143 65-226 68-248 (430)
97 PF00809 Pterin_bind: Pterin b 43.9 87 0.0019 27.0 6.7 69 152-224 57-125 (210)
98 cd01822 Lysophospholipase_L1_l 43.7 1.5E+02 0.0032 24.0 7.9 59 166-224 38-110 (177)
99 PRK01018 50S ribosomal protein 43.6 1E+02 0.0022 23.2 6.1 60 155-221 5-64 (99)
100 KOG1549 Cysteine desulfurase N 43.5 1.4E+02 0.0029 29.0 8.2 71 154-224 144-220 (428)
101 cd01976 Nitrogenase_MoFe_alpha 43.4 3.1E+02 0.0067 26.4 17.1 152 60-225 76-253 (421)
102 PF15221 LEP503: Lens epitheli 43.3 36 0.00078 22.5 3.0 24 12-37 15-38 (61)
103 PF00148 Oxidored_nitro: Nitro 42.9 1.8E+02 0.004 27.5 9.3 143 64-225 56-227 (398)
104 TIGR03677 rpl7ae 50S ribosomal 42.6 1.5E+02 0.0032 23.1 7.1 65 151-221 11-75 (117)
105 PRK13958 N-(5'-phosphoribosyl) 42.2 1.2E+02 0.0026 26.2 7.2 78 113-213 17-95 (207)
106 COG3653 N-acyl-D-aspartate/D-g 41.3 3.5E+02 0.0076 26.4 16.0 80 42-130 183-278 (579)
107 COG1358 RPL8A Ribosomal protei 40.6 1.3E+02 0.0029 23.4 6.4 65 151-221 12-76 (116)
108 PRK00087 4-hydroxy-3-methylbut 39.9 1.2E+02 0.0026 31.2 7.9 107 164-281 153-270 (647)
109 PRK15072 bifunctional D-altron 39.6 2.2E+02 0.0047 27.3 9.3 68 155-224 246-317 (404)
110 cd07943 DRE_TIM_HOA 4-hydroxy- 39.5 2.8E+02 0.006 24.7 9.5 96 106-221 24-131 (263)
111 TIGR00289 conserved hypothetic 39.3 2.4E+02 0.0051 24.7 8.6 84 205-302 75-168 (222)
112 TIGR00126 deoC deoxyribose-pho 38.8 1.8E+02 0.0039 25.2 7.8 73 38-120 129-205 (211)
113 PF09370 TIM-br_sig_trns: TIM- 38.7 62 0.0013 29.2 4.9 58 151-221 94-156 (268)
114 PF00682 HMGL-like: HMGL-like 38.5 2.6E+02 0.0057 24.2 12.4 141 104-286 14-176 (237)
115 PRK06740 histidinol-phosphatas 38.2 3.4E+02 0.0073 25.3 12.6 61 107-171 156-220 (331)
116 PRK14457 ribosomal RNA large s 38.1 3.5E+02 0.0075 25.4 14.7 149 66-226 163-330 (345)
117 PF01248 Ribosomal_L7Ae: Ribos 37.9 1.3E+02 0.0028 22.0 6.0 63 154-222 3-65 (95)
118 TIGR01282 nifD nitrogenase mol 37.9 4E+02 0.0087 26.1 16.6 146 62-225 111-288 (466)
119 COG2089 SpsE Sialic acid synth 37.8 3.5E+02 0.0075 25.3 11.8 118 38-186 87-225 (347)
120 KOG1579 Homocysteine S-methylt 37.6 3.4E+02 0.0073 25.2 16.2 217 39-285 51-312 (317)
121 PF14871 GHL6: Hypothetical gl 37.1 35 0.00075 27.3 2.8 22 205-226 47-68 (132)
122 PRK06015 keto-hydroxyglutarate 36.9 96 0.0021 26.8 5.7 60 154-220 42-102 (201)
123 PRK10528 multifunctional acyl- 36.8 1.7E+02 0.0038 24.4 7.4 94 161-255 40-147 (191)
124 PRK09413 IS2 repressor TnpA; R 36.8 62 0.0014 25.2 4.2 40 38-77 13-53 (121)
125 TIGR02660 nifV_homocitr homoci 36.4 3.7E+02 0.0081 25.3 12.8 92 106-220 25-131 (365)
126 PRK04175 rpl7ae 50S ribosomal 36.3 1.7E+02 0.0037 22.9 6.6 64 152-221 16-79 (122)
127 PF01408 GFO_IDH_MocA: Oxidore 35.8 1.9E+02 0.0041 21.7 9.2 86 157-251 15-114 (120)
128 cd01967 Nitrogenase_MoFe_alpha 35.6 3.9E+02 0.0085 25.3 15.9 112 62-191 67-189 (406)
129 PF07287 DUF1446: Protein of u 35.4 1.8E+02 0.0038 27.7 7.6 87 155-252 12-100 (362)
130 TIGR01182 eda Entner-Doudoroff 35.4 1.1E+02 0.0024 26.4 5.9 61 153-220 45-106 (204)
131 PF06506 PrpR_N: Propionate ca 35.0 40 0.00086 28.2 3.0 66 150-220 62-130 (176)
132 cd03321 mandelate_racemase Man 34.6 3.9E+02 0.0084 25.0 12.6 64 155-220 226-293 (355)
133 PRK09061 D-glutamate deacylase 34.2 4.8E+02 0.01 25.9 11.3 112 42-175 170-285 (509)
134 COG1099 Predicted metal-depend 33.9 3.4E+02 0.0073 24.0 9.9 92 159-258 57-162 (254)
135 TIGR02329 propionate_PrpR prop 33.8 3E+02 0.0064 27.6 9.4 70 151-223 83-153 (526)
136 PRK14456 ribosomal RNA large s 33.6 2.8E+02 0.0061 26.3 8.8 100 123-226 237-353 (368)
137 COG4626 Phage terminase-like p 33.6 1.7E+02 0.0038 29.2 7.5 46 149-194 410-455 (546)
138 PF04748 Polysacc_deac_2: Dive 33.2 3.2E+02 0.007 23.6 9.0 90 32-127 65-182 (213)
139 TIGR01378 thi_PPkinase thiamin 33.0 1.9E+02 0.0041 24.8 7.0 57 205-285 50-110 (203)
140 PRK08776 cystathionine gamma-s 32.8 4.5E+02 0.0097 25.2 10.8 74 152-226 110-186 (405)
141 PF02574 S-methyl_trans: Homoc 32.5 3.9E+02 0.0084 24.3 11.0 218 39-285 39-303 (305)
142 PRK14459 ribosomal RNA large s 32.4 4.1E+02 0.0088 25.3 9.6 103 119-226 237-359 (373)
143 PRK08446 coproporphyrinogen II 32.2 4.2E+02 0.0092 24.7 10.4 99 26-176 109-230 (350)
144 TIGR00035 asp_race aspartate r 32.2 1.4E+02 0.003 26.1 6.1 83 102-189 16-99 (229)
145 TIGR02931 anfK_nitrog Fe-only 31.7 5E+02 0.011 25.4 14.7 117 60-192 70-199 (461)
146 PF03102 NeuB: NeuB family; I 31.7 1.6E+02 0.0034 26.2 6.4 65 205-285 59-135 (241)
147 PRK14455 ribosomal RNA large s 31.6 3.1E+02 0.0066 25.9 8.7 77 150-226 244-337 (356)
148 cd03323 D-glucarate_dehydratas 31.5 2.3E+02 0.005 27.1 8.0 68 155-224 250-321 (395)
149 cd03325 D-galactonate_dehydrat 31.1 4.4E+02 0.0096 24.6 13.6 66 155-222 216-285 (352)
150 cd03318 MLE Muconate Lactonizi 31.0 2E+02 0.0044 26.9 7.5 65 155-221 228-296 (365)
151 TIGR03471 HpnJ hopanoid biosyn 31.0 5.1E+02 0.011 25.3 11.6 124 146-284 224-361 (472)
152 PF02571 CbiJ: Precorrin-6x re 30.9 3.1E+02 0.0067 24.4 8.2 119 176-318 54-181 (249)
153 PRK01222 N-(5'-phosphoribosyl) 30.7 2.1E+02 0.0045 24.7 6.9 50 165-219 53-104 (210)
154 COG2200 Rtn c-di-GMP phosphodi 30.5 3.9E+02 0.0084 23.7 10.0 145 45-221 53-212 (256)
155 PF13378 MR_MLE_C: Enolase C-t 30.3 98 0.0021 23.3 4.3 51 173-226 3-56 (111)
156 COG1168 MalY Bifunctional PLP- 30.3 1.1E+02 0.0024 29.1 5.3 77 39-131 39-117 (388)
157 COG0626 MetC Cystathionine bet 30.2 3E+02 0.0065 26.4 8.4 80 151-231 112-194 (396)
158 TIGR01862 N2-ase-Ialpha nitrog 30.2 5.2E+02 0.011 25.1 14.7 146 62-225 97-272 (443)
159 PRK06552 keto-hydroxyglutarate 30.1 1.4E+02 0.0031 25.9 5.7 60 154-220 51-114 (213)
160 TIGR02534 mucon_cyclo muconate 29.9 1.6E+02 0.0034 27.8 6.5 68 155-224 227-298 (368)
161 COG1104 NifS Cysteine sulfinat 29.8 1.4E+02 0.003 28.5 6.0 76 150-225 100-181 (386)
162 PF01118 Semialdhyde_dh: Semia 29.8 73 0.0016 24.6 3.6 28 38-65 74-101 (121)
163 cd01966 Nitrogenase_NifN_1 Nit 29.7 4.1E+02 0.009 25.6 9.4 114 62-191 61-187 (417)
164 cd01821 Rhamnogalacturan_acety 29.7 2.8E+02 0.006 23.0 7.5 88 166-253 36-149 (198)
165 PRK05799 coproporphyrinogen II 29.5 4.8E+02 0.01 24.5 12.5 101 123-223 5-117 (374)
166 cd00405 PRAI Phosphoribosylant 29.1 3.5E+02 0.0077 22.8 9.7 41 120-180 73-113 (203)
167 COG1751 Uncharacterized conser 28.8 1.9E+02 0.0042 23.8 5.7 70 41-119 14-85 (186)
168 PRK13803 bifunctional phosphor 28.8 5E+02 0.011 26.5 10.2 88 114-219 20-108 (610)
169 PLN02363 phosphoribosylanthran 28.8 2.7E+02 0.0059 24.9 7.5 74 101-198 56-130 (256)
170 PRK02301 putative deoxyhypusin 28.7 4.3E+02 0.0094 24.5 8.8 51 41-95 43-94 (316)
171 cd02801 DUS_like_FMN Dihydrour 28.6 3.7E+02 0.0081 23.0 9.9 127 39-189 65-207 (231)
172 PRK09058 coproporphyrinogen II 28.4 5.6E+02 0.012 24.9 14.1 171 102-283 42-237 (449)
173 PF01904 DUF72: Protein of unk 28.3 4E+02 0.0087 23.2 10.6 67 55-130 19-95 (230)
174 PF06080 DUF938: Protein of un 28.3 85 0.0018 27.1 3.9 42 192-233 108-152 (204)
175 cd04743 NPD_PKS 2-Nitropropane 28.2 3.8E+02 0.0083 24.9 8.5 62 161-222 23-89 (320)
176 PF01081 Aldolase: KDPG and KH 28.2 1.4E+02 0.003 25.6 5.3 59 155-220 47-106 (196)
177 PRK00730 rnpA ribonuclease P; 28.1 3.2E+02 0.007 22.0 7.2 46 85-131 46-93 (138)
178 cd01971 Nitrogenase_VnfN_like 28.0 5.5E+02 0.012 24.7 10.6 113 62-194 66-192 (427)
179 KOG1576 Predicted oxidoreducta 28.0 1.6E+02 0.0035 26.8 5.6 137 38-218 117-270 (342)
180 TIGR00048 radical SAM enzyme, 27.9 5.2E+02 0.011 24.3 10.7 99 123-226 218-333 (355)
181 cd04731 HisF The cyclase subun 27.7 4.1E+02 0.0089 23.1 11.9 46 24-76 70-116 (243)
182 cd07939 DRE_TIM_NifV Streptomy 27.5 4.4E+02 0.0095 23.3 12.9 95 104-221 20-129 (259)
183 PRK08645 bifunctional homocyst 27.1 6.9E+02 0.015 25.5 22.7 209 39-286 41-286 (612)
184 PF03599 CdhD: CO dehydrogenas 27.1 5.6E+02 0.012 24.5 9.6 85 120-225 69-154 (386)
185 PRK14462 ribosomal RNA large s 27.0 5E+02 0.011 24.5 9.2 77 150-226 245-338 (356)
186 COG1751 Uncharacterized conser 27.0 3.6E+02 0.0079 22.3 8.0 101 151-265 12-123 (186)
187 PF09989 DUF2229: CoA enzyme a 26.9 4.2E+02 0.0092 23.0 9.3 33 189-221 184-218 (221)
188 COG1121 ZnuC ABC-type Mn/Zn tr 26.7 2.7E+02 0.0057 25.0 6.9 50 119-183 156-205 (254)
189 PRK06683 hypothetical protein; 26.6 2.4E+02 0.0051 20.4 5.5 57 159-222 4-60 (82)
190 PLN03228 methylthioalkylmalate 26.3 6.3E+02 0.014 25.2 10.1 97 105-223 107-230 (503)
191 PF00682 HMGL-like: HMGL-like 26.2 4.3E+02 0.0092 22.8 10.7 164 38-225 11-193 (237)
192 PRK04390 rnpA ribonuclease P; 26.1 3.2E+02 0.0069 21.3 7.3 64 85-163 44-109 (120)
193 COG0135 TrpF Phosphoribosylant 26.0 4.4E+02 0.0095 22.9 9.6 80 114-219 19-102 (208)
194 PRK08057 cobalt-precorrin-6x r 25.9 4.6E+02 0.01 23.3 8.4 119 176-318 53-177 (248)
195 TIGR03551 F420_cofH 7,8-dideme 25.8 4.3E+02 0.0093 24.6 8.6 124 149-284 70-216 (343)
196 PF13380 CoA_binding_2: CoA bi 25.8 3.1E+02 0.0067 21.0 6.8 20 202-221 89-108 (116)
197 cd01994 Alpha_ANH_like_IV This 25.6 4.2E+02 0.009 22.5 9.4 106 178-296 48-166 (194)
198 COG3215 PilZ Tfp pilus assembl 25.6 1.6E+02 0.0035 22.4 4.4 68 39-114 18-105 (117)
199 PF01876 RNase_P_p30: RNase P 25.4 1.4E+02 0.003 24.1 4.7 121 155-295 15-144 (150)
200 PRK03031 rnpA ribonuclease P; 25.4 3.3E+02 0.0071 21.2 7.1 65 85-164 47-114 (122)
201 PF01053 Cys_Met_Meta_PP: Cys/ 25.3 2.3E+02 0.005 27.0 6.7 78 151-230 104-185 (386)
202 cd00248 Mth938-like Mth938-lik 25.3 2.5E+02 0.0055 21.4 5.8 53 172-224 36-88 (109)
203 PRK08247 cystathionine gamma-s 25.1 3.8E+02 0.0082 25.1 8.2 58 167-225 116-176 (366)
204 PF01120 Alpha_L_fucos: Alpha- 24.9 1.8E+02 0.0039 27.2 5.8 20 205-224 141-160 (346)
205 TIGR03700 mena_SCO4494 putativ 24.8 5.8E+02 0.012 23.8 12.2 137 101-282 80-223 (351)
206 PRK02083 imidazole glycerol ph 24.8 4.8E+02 0.01 22.9 11.9 64 155-218 186-251 (253)
207 PRK01313 rnpA ribonuclease P; 24.6 3.6E+02 0.0078 21.4 7.1 63 85-163 47-113 (129)
208 TIGR03597 GTPase_YqeH ribosome 24.6 5.9E+02 0.013 23.9 11.5 122 39-185 49-176 (360)
209 COG4130 Predicted sugar epimer 24.6 3.8E+02 0.0083 23.5 7.1 75 176-251 50-136 (272)
210 PF03851 UvdE: UV-endonuclease 24.6 3.2E+02 0.007 24.8 7.1 80 41-130 45-154 (275)
211 KOG0173 20S proteasome, regula 24.5 69 0.0015 28.5 2.7 19 38-56 183-201 (271)
212 PF13407 Peripla_BP_4: Peripla 24.3 4.2E+02 0.009 22.7 7.9 52 103-176 14-65 (257)
213 COG2055 Malate/L-lactate dehyd 24.2 4.5E+02 0.0097 24.8 8.1 89 100-222 6-115 (349)
214 cd05560 Xcc1710_like Xcc1710_l 24.1 2.6E+02 0.0055 21.4 5.6 52 172-224 37-88 (109)
215 cd01306 PhnM PhnM is believed 24.1 1.8E+02 0.0039 27.1 5.6 71 151-222 94-183 (325)
216 PF00388 PI-PLC-X: Phosphatidy 24.1 58 0.0013 26.1 2.1 16 45-60 30-45 (146)
217 COG5310 Homospermidine synthas 24.1 6.1E+02 0.013 23.9 8.7 92 25-131 15-124 (481)
218 COG2089 SpsE Sialic acid synth 23.9 1.4E+02 0.003 27.8 4.6 23 203-226 91-113 (347)
219 KOG0258 Alanine aminotransfera 23.9 6.7E+02 0.014 24.3 9.4 27 67-95 119-145 (475)
220 PRK14463 ribosomal RNA large s 23.9 4.5E+02 0.0097 24.7 8.3 78 149-226 231-325 (349)
221 TIGR03217 4OH_2_O_val_ald 4-hy 23.8 6E+02 0.013 23.7 11.2 24 38-61 21-44 (333)
222 TIGR01502 B_methylAsp_ase meth 23.8 5.7E+02 0.012 24.7 9.1 70 153-224 279-357 (408)
223 PRK14476 nitrogenase molybdenu 23.7 6.9E+02 0.015 24.4 10.2 114 62-191 72-198 (455)
224 PF01784 NIF3: NIF3 (NGG1p int 23.7 51 0.0011 29.1 1.8 53 24-77 168-234 (241)
225 PRK15408 autoinducer 2-binding 23.6 5.9E+02 0.013 23.5 11.6 77 85-184 22-98 (336)
226 COG0820 Predicted Fe-S-cluster 23.5 6.3E+02 0.014 23.8 9.2 118 84-216 98-238 (349)
227 PRK14470 ribosomal RNA large s 23.4 5.7E+02 0.012 23.9 8.8 77 150-226 229-322 (336)
228 PRK06294 coproporphyrinogen II 23.4 6.3E+02 0.014 23.8 9.4 101 26-175 114-241 (370)
229 PRK14469 ribosomal RNA large s 23.3 5.3E+02 0.011 24.1 8.7 77 150-226 233-325 (343)
230 PF00875 DNA_photolyase: DNA p 23.2 4E+02 0.0087 21.5 7.1 61 161-222 62-124 (165)
231 COG2159 Predicted metal-depend 23.2 5.8E+02 0.012 23.2 12.9 94 113-225 55-167 (293)
232 PRK09856 fructoselysine 3-epim 23.1 5.1E+02 0.011 22.8 8.3 71 154-225 15-113 (275)
233 cd07938 DRE_TIM_HMGL 3-hydroxy 23.0 5.4E+02 0.012 23.1 8.4 99 104-220 20-132 (274)
234 PRK08195 4-hyroxy-2-oxovalerat 23.0 6.2E+02 0.014 23.6 12.3 111 99-222 21-135 (337)
235 COG0422 ThiC Thiamine biosynth 22.7 6.9E+02 0.015 24.0 19.6 136 38-220 75-222 (432)
236 TIGR02127 pyrF_sub2 orotidine 22.6 5.7E+02 0.012 23.0 12.0 150 103-281 37-204 (261)
237 cd08568 GDPD_TmGDE_like Glycer 22.5 5E+02 0.011 22.3 8.5 31 157-187 108-138 (226)
238 COG1167 ARO8 Transcriptional r 22.5 7.3E+02 0.016 24.2 16.7 150 39-224 105-269 (459)
239 PRK12581 oxaloacetate decarbox 22.4 7.6E+02 0.016 24.4 17.2 113 39-176 103-215 (468)
240 COG0327 Uncharacterized conser 22.4 1.7E+02 0.0037 26.1 4.9 34 43-77 199-232 (250)
241 TIGR01430 aden_deam adenosine 22.3 6E+02 0.013 23.2 14.8 156 43-225 74-242 (324)
242 PRK10799 metal-binding protein 22.3 1.5E+02 0.0033 26.2 4.6 30 47-77 200-229 (247)
243 PRK06256 biotin synthase; Vali 22.2 5.7E+02 0.012 23.5 8.7 124 148-284 90-224 (336)
244 PRK10415 tRNA-dihydrouridine s 22.1 6.3E+02 0.014 23.3 12.9 134 38-197 74-224 (321)
245 cd00945 Aldolase_Class_I Class 21.8 4.5E+02 0.0097 21.5 7.5 78 40-122 64-147 (201)
246 TIGR02666 moaA molybdenum cofa 21.8 6.3E+02 0.014 23.2 14.2 105 38-166 43-153 (334)
247 COG3737 Uncharacterized conser 21.7 1.6E+02 0.0036 23.1 4.0 50 176-225 56-106 (127)
248 PRK00499 rnpA ribonuclease P; 21.6 3.7E+02 0.0081 20.5 7.1 64 85-164 38-104 (114)
249 PRK12323 DNA polymerase III su 21.5 4.2E+02 0.009 27.5 7.8 69 101-187 105-175 (700)
250 COG0279 GmhA Phosphoheptose is 21.4 4.9E+02 0.011 21.8 8.8 116 41-185 28-155 (176)
251 PRK13347 coproporphyrinogen II 21.4 7.6E+02 0.016 24.0 15.6 107 166-283 103-226 (453)
252 PF01902 ATP_bind_4: ATP-bindi 21.4 2.1E+02 0.0046 24.9 5.2 56 257-315 126-191 (218)
253 TIGR01579 MiaB-like-C MiaB-lik 21.3 7.2E+02 0.016 23.7 11.7 129 145-285 163-314 (414)
254 PF09012 FeoC: FeoC like trans 21.3 1.2E+02 0.0026 20.8 3.0 26 150-175 27-52 (69)
255 PF01527 HTH_Tnp_1: Transposas 21.3 30 0.00065 24.1 -0.1 40 39-78 8-48 (76)
256 PF03279 Lip_A_acyltrans: Bact 21.1 6.1E+02 0.013 22.7 9.6 65 44-120 110-174 (295)
257 PRK01492 rnpA ribonuclease P; 21.0 4E+02 0.0088 20.7 7.2 61 86-161 47-113 (118)
258 TIGR02026 BchE magnesium-proto 20.9 8.1E+02 0.018 24.1 11.9 65 150-216 321-392 (497)
259 smart00148 PLCXc Phospholipase 20.9 80 0.0017 25.2 2.3 17 44-60 31-47 (135)
260 PRK00507 deoxyribose-phosphate 20.8 4.3E+02 0.0092 23.1 7.0 72 38-119 133-208 (221)
261 TIGR01210 conserved hypothetic 20.8 6.6E+02 0.014 23.1 17.2 179 39-250 86-280 (313)
262 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.8 6.2E+02 0.013 22.7 10.0 121 106-248 23-157 (275)
263 PLN02389 biotin synthase 20.7 7.4E+02 0.016 23.6 12.5 105 38-166 116-227 (379)
264 COG2179 Predicted hydrolase of 20.7 4.5E+02 0.0097 22.1 6.6 39 151-190 48-86 (175)
265 TIGR02370 pyl_corrinoid methyl 20.6 5.3E+02 0.011 21.9 8.3 57 157-216 104-164 (197)
266 PRK06131 dihydroxy-acid dehydr 20.6 1.5E+02 0.0033 29.8 4.6 80 240-326 236-319 (571)
267 PRK14465 ribosomal RNA large s 20.5 7.1E+02 0.015 23.4 9.1 99 123-226 215-329 (342)
268 PRK09249 coproporphyrinogen II 20.4 7.9E+02 0.017 23.8 12.9 107 166-283 102-225 (453)
269 PF05368 NmrA: NmrA-like famil 20.4 3.1E+02 0.0067 23.4 6.2 67 157-226 36-105 (233)
270 TIGR02668 moaA_archaeal probab 20.4 6.4E+02 0.014 22.7 12.0 106 38-166 40-148 (302)
271 cd04734 OYE_like_3_FMN Old yel 20.3 7.1E+02 0.015 23.2 14.6 36 155-190 274-310 (343)
272 COG0282 ackA Acetate kinase [E 20.3 7.3E+02 0.016 23.8 8.7 121 159-284 164-291 (396)
273 PF07725 LRR_3: Leucine Rich R 20.3 42 0.00092 17.5 0.4 10 317-326 8-17 (20)
274 cd04742 NPD_FabD 2-Nitropropan 20.2 4.3E+02 0.0093 25.6 7.4 67 156-223 29-103 (418)
275 PLN02775 Probable dihydrodipic 20.2 6.1E+02 0.013 23.2 8.0 71 109-200 68-138 (286)
276 PRK14461 ribosomal RNA large s 20.1 7.6E+02 0.017 23.5 9.4 99 123-226 231-352 (371)
277 COG4015 Predicted dinucleotide 20.0 4.6E+02 0.01 22.0 6.4 72 43-117 123-211 (217)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=4.5e-69 Score=478.06 Aligned_cols=267 Identities=42% Similarity=0.720 Sum_probs=245.8
Q ss_pred ccCeeecCCCCCCcccCcceeeccccCCChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEE
Q 044053 11 NVPKLKLSSSSGHLNMPVIGLGCAVDKSDTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLF 90 (327)
Q Consensus 11 ~m~~~~Lg~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~ 90 (327)
.+++.+|++ | .+||.||||||+++ +.+.+.+.|.+|++.|||+||||..||||+.+|++|++. |+ +|+++|
T Consensus 2 ~~~~~~l~~--g-~~iP~iGlGt~~~~-~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v--~ReelF 72 (280)
T COG0656 2 MKTKVTLNN--G-VEIPAIGLGTWQIG-DDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GV--PREELF 72 (280)
T ss_pred CCceeecCC--C-CcccCcceEeeecC-CchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CC--CHHHeE
Confidence 355788999 7 89999999999965 223388999999999999999999999999999999985 77 899999
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 044053 91 ITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSI 170 (327)
Q Consensus 91 I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~i 170 (327)
|+||+|+.+.+++.+.+++++||+|||+||||||++|||.+. . .....++|++|++++++||||+|
T Consensus 73 ittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~-------------~~~~~etw~alE~l~~~G~ir~I 138 (280)
T COG0656 73 ITTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K-------------YVVIEETWKALEELVDEGLIRAI 138 (280)
T ss_pred EEeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c-------------CccHHHHHHHHHHHHhcCCccEE
Confidence 999999999999999999999999999999999999999653 1 11278999999999999999999
Q ss_pred EeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcC
Q 044053 171 GLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHG 250 (327)
Q Consensus 171 GvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~ 250 (327)
|||||+..+++++++.+++.|++||++|||+.++.+++++|+++||.++|||||+. |.. ++.++.+.+||++||
T Consensus 139 GVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~~-----l~~~~~l~~Ia~k~g 212 (280)
T COG0656 139 GVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GGK-----LLDNPVLAEIAKKYG 212 (280)
T ss_pred EeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-ccc-----cccChHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999986 421 567889999999999
Q ss_pred CCHHHHHHHHHHhcCCEEeecCCCHHHHHHhhcccccccCHHHHHHHhcCCCCCcc
Q 044053 251 KTVAQVSLRWIVEQGATVVVKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQHRLI 306 (327)
Q Consensus 251 ~s~aq~al~w~l~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~ 306 (327)
.|+||++|+|++++|+++||.+++++|+++|++++++.||++||+.|+++....+.
T Consensus 213 ~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 213 KTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred CCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 99999999999999999999999999999999999999999999999999987644
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=8.9e-68 Score=469.71 Aligned_cols=281 Identities=49% Similarity=0.794 Sum_probs=256.9
Q ss_pred eeecCCCCCCcccCcceeeccccCCChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 044053 14 KLKLSSSSGHLNMPVIGLGCAVDKSDTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITS 93 (327)
Q Consensus 14 ~~~Lg~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~t 93 (327)
+.+|++ | .+||.||||||+ .+..++.+.++.|++.||||||||..||||+.+|++|++.+++|.+ +|+++||+|
T Consensus 6 ~~~Ln~--G-~~mP~iGlGTw~--~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v-~RediFiTS 79 (300)
T KOG1577|consen 6 TVKLNN--G-FKMPIIGLGTWQ--SPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGV-KREDIFITS 79 (300)
T ss_pred eEeccC--C-CccceeeeEecc--cChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCc-chhhheeee
Confidence 678999 9 999999999999 5678899999999999999999999999999999999999977755 899999999
Q ss_pred ccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCC--CC-CCCCCHHHHHHHHHHHHHcCCccEE
Q 044053 94 KLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPK--ED-LLPMDYRGVWEAMEESQMLGLTKSI 170 (327)
Q Consensus 94 K~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~l~~~Gkir~i 170 (327)
|+|+....++.++.++++||++||+||+|||++|||...++ ..|.+. +. ....+..++|++||+++++|+||+|
T Consensus 80 Klw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~---~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsI 156 (300)
T KOG1577|consen 80 KLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD---SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSI 156 (300)
T ss_pred ccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCC---CCCcccccccccccchHHHHHHHHHHHHHcCCceEe
Confidence 99999889999999999999999999999999999987644 112211 11 1124689999999999999999999
Q ss_pred EeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcC
Q 044053 171 GLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHG 250 (327)
Q Consensus 171 GvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~ 250 (327)
|||||+..++++++..+.++|++||+++||+.++.+++++|+++||.|.||||||+++. +. .++.++.+.+||++||
T Consensus 157 GVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l~~iA~K~~ 233 (300)
T KOG1577|consen 157 GVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVLKEIAKKYN 233 (300)
T ss_pred eeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999998443 22 6788999999999999
Q ss_pred CCHHHHHHHHHHhcCCEEeecCCCHHHHHHhhcccccccCHHHHHHHhcCCCCCcc
Q 044053 251 KTVAQVSLRWIVEQGATVVVKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQHRLI 306 (327)
Q Consensus 251 ~s~aq~al~w~l~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~ 306 (327)
+|+||++|||++++|++|||.++|++|++||++++++.||++||+.|+......|.
T Consensus 234 kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 234 KTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred CCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 99999999999999999999999999999999999999999999999998887765
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=5.5e-62 Score=448.41 Aligned_cols=267 Identities=32% Similarity=0.528 Sum_probs=238.8
Q ss_pred cCeeecCCCCCCcccCcceeeccccCC-----ChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCC
Q 044053 12 VPKLKLSSSSGHLNMPVIGLGCAVDKS-----DTDALKLAVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGLV 83 (327)
Q Consensus 12 m~~~~Lg~t~g~~~vs~lglG~~~~~~-----~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~~L~~~~~~g~~ 83 (327)
|++|+||+| | ++||+||||||.++. +.+++.++|++|+++|||+||||+.|| ||++||++|+++ +
T Consensus 1 m~~r~lG~~-g-l~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~-- 73 (316)
T COG0667 1 MKYRRLGRS-G-LKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G-- 73 (316)
T ss_pred CCceecCCC-C-ceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C--
Confidence 789999998 9 999999999999982 234667799999999999999999999 899999999965 2
Q ss_pred CCCCcEEEEeccCCC----------CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHH
Q 044053 84 SSREQLFITSKLWCQ----------NAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRG 153 (327)
Q Consensus 84 ~~R~~v~I~tK~~~~----------~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 153 (327)
.|++++|+||++.. +.++++++++++.||+|||||||||||+|||+...+ .++
T Consensus 74 -~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p----------------~~e 136 (316)
T COG0667 74 -RRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP----------------IEE 136 (316)
T ss_pred -CCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC----------------HHH
Confidence 38999999999532 358999999999999999999999999999987443 888
Q ss_pred HHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc--HHHHHHHHHcCCEEEEecCCCCCCccC
Q 044053 154 VWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIY 231 (327)
Q Consensus 154 ~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~~G~l~ 231 (327)
++.+|.+|+++||||+||+||++.+++.++++.+ .+++++|.+||++.++ .+++++|+++||++++|+||++ |+|+
T Consensus 137 ~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~Lt 214 (316)
T COG0667 137 TLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLLT 214 (316)
T ss_pred HHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-cccC
Confidence 9999999999999999999999999999999986 6788999999999976 4589999999999999999998 9999
Q ss_pred CCCcc------------c----------ChHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhccccc
Q 044053 232 GSNQV------------L----------ENEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDW 287 (327)
Q Consensus 232 ~~~~~------------~----------~~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~ 287 (327)
++... . ....+.++|+++|+|++|+||+|++++| +++|+|+++++||++|+++++.
T Consensus 215 gk~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~ 294 (316)
T COG0667 215 GKYLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDI 294 (316)
T ss_pred CCcCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcC
Confidence 76332 0 0144889999999999999999999998 7899999999999999999999
Q ss_pred ccCHHHHHHHhcCCCCC
Q 044053 288 KLTDDDYDKINQIPQHR 304 (327)
Q Consensus 288 ~L~~~~~~~l~~~~~~~ 304 (327)
.|++++++.|++.....
T Consensus 295 ~L~~~~~~~l~~~~~~~ 311 (316)
T COG0667 295 KLSEEELAALDEISAEE 311 (316)
T ss_pred CCCHHHHHHHHHHhhhc
Confidence 99999999999876643
No 4
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.8e-62 Score=440.25 Aligned_cols=286 Identities=31% Similarity=0.475 Sum_probs=256.8
Q ss_pred CCcccccccccCeeecCCCCCCcccCcceeeccccC-----CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHH
Q 044053 2 DSSTQSTVFNVPKLKLSSSSGHLNMPVIGLGCAVDK-----SDTDALKLAVLEAIKLGYRHFDTAAMYG---TEKALGEA 73 (327)
Q Consensus 2 ~~~~~~~~~~m~~~~Lg~t~g~~~vs~lglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~~ 73 (327)
.++..+....|+|++||+. | ++||++|||||.+. .+++++.+++++|+++|+|+||||++|| ||.++|++
T Consensus 2 ~~~~~~~~~~~~~~~lg~~-g-l~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~ 79 (336)
T KOG1575|consen 2 PAPEPSTELGMLRRKLGNS-G-LKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEF 79 (336)
T ss_pred CcccccchhcceeeeccCC-C-ceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHH
Confidence 3455666678999999998 9 99999999996432 4889999999999999999999999999 89999999
Q ss_pred HHHHHhcCCCCCCCcEEEEeccCC-------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCC
Q 044053 74 IAEALRLGLVSSREQLFITSKLWC-------QNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDL 146 (327)
Q Consensus 74 L~~~~~~g~~~~R~~v~I~tK~~~-------~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~ 146 (327)
|+++ +. +|++|+|+||++. ...+...+...++.||+|||++||||||+||+|+..|
T Consensus 80 i~~~---~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p------------ 142 (336)
T KOG1575|consen 80 IKSR---GW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP------------ 142 (336)
T ss_pred HHhc---CC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC------------
Confidence 9986 54 8999999999853 3456788999999999999999999999999988665
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc---HHHHHHHHHcCCEEEEecC
Q 044053 147 LPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 147 ~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~p 223 (327)
.++++++|.+++++||||+||+|+++++++.++...+.++++++|++||++.++ .+++++|++.||++++|||
T Consensus 143 ----iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysP 218 (336)
T KOG1575|consen 143 ----IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSP 218 (336)
T ss_pred ----HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecc
Confidence 899999999999999999999999999999999999988899999999999997 5699999999999999999
Q ss_pred CCCCCccCCCCcc-----------------cC----------hHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCC
Q 044053 224 LGAVGKIYGSNQV-----------------LE----------NEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLN 274 (327)
Q Consensus 224 l~~~G~l~~~~~~-----------------~~----------~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~ 274 (327)
|++ |+|+++... .. ...+.++|+++|+|++|+||+|+++++ ++||||+++
T Consensus 219 L~~-G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ 297 (336)
T KOG1575|consen 219 LGR-GLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASK 297 (336)
T ss_pred ccc-ceeccCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCc
Confidence 998 999875221 00 145889999999999999999999998 899999999
Q ss_pred HHHHHHhhcccccccCHHHHHHHhcCCCCCccCCccc
Q 044053 275 LERMKQNLGIFDWKLTDDDYDKINQIPQHRLIPSDFW 311 (327)
Q Consensus 275 ~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~~~~~~ 311 (327)
.+|++||++|+...|+++++..|+++.+.....++++
T Consensus 298 ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~ 334 (336)
T KOG1575|consen 298 IEQLKENIGALSVKLTPEEIKELEEIIDKILGFGPRS 334 (336)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHhhccccCcCCCC
Confidence 9999999999999999999999999998877776665
No 5
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5.8e-60 Score=427.43 Aligned_cols=254 Identities=35% Similarity=0.597 Sum_probs=230.4
Q ss_pred cccCcceeeccccCCChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChh
Q 044053 24 LNMPVIGLGCAVDKSDTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRD 103 (327)
Q Consensus 24 ~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~ 103 (327)
++||.||||||.+ +.+++.++++.|++.|||+||||+.||+|+.||++|++. |+ +|+++||+||++....+++
T Consensus 1 ~~vs~lglGt~~~--~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~v~i~TK~~~~~~~~~ 73 (267)
T PRK11172 1 MSIPAFGLGTFRL--KDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GV--PRDELFITTKIWIDNLAKD 73 (267)
T ss_pred CCCCCEeeEcccc--ChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CC--ChhHeEEEEEeCCCCCCHH
Confidence 3689999999985 457799999999999999999999999999999999864 54 6999999999987677889
Q ss_pred hHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHH
Q 044053 104 HVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETI 183 (327)
Q Consensus 104 ~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~ 183 (327)
.+++++++||+|||+||||+|++|||++.. .....++|++|++++++||||+||||||+.++++++
T Consensus 74 ~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~--------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~ 139 (267)
T PRK11172 74 KLIPSLKESLQKLRTDYVDLTLIHWPSPND--------------EVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQA 139 (267)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCCCCCCC--------------CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHH
Confidence 999999999999999999999999996421 123688999999999999999999999999999999
Q ss_pred HHhCCC-CCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHHHHHHHHHH
Q 044053 184 LTFATI-PPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQVSLRWIV 262 (327)
Q Consensus 184 ~~~~~~-~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~al~w~l 262 (327)
++.+.. +++++|++||++.++.+++++|+++||++++|+||+. |.+. ..+.+.++|+++|+|++|+||+|++
T Consensus 140 ~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~~------~~~~l~~~a~~~~~s~aqval~w~l 212 (267)
T PRK11172 140 IAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKVL------KDPVIARIAAKHNATPAQVILAWAM 212 (267)
T ss_pred HHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Cccc------CCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 887654 6889999999999989999999999999999999997 7543 3467999999999999999999999
Q ss_pred hcCCEEeecCCCHHHHHHhhcccccccCHHHHHHHhcCCCCCc
Q 044053 263 EQGATVVVKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQHRL 305 (327)
Q Consensus 263 ~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~ 305 (327)
++|+++|+|+++++|+++|+++++++||++++++|+++.++.+
T Consensus 213 ~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 213 QLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred hCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 9999999999999999999999999999999999999987644
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1e-58 Score=434.29 Aligned_cols=283 Identities=27% Similarity=0.372 Sum_probs=236.8
Q ss_pred cCeeecCCCCCCcccCcceeeccccC--CChHHHHHHHHHHHHcCCCEEeCCCCcC----------CHHHHHHHHHHHHh
Q 044053 12 VPKLKLSSSSGHLNMPVIGLGCAVDK--SDTDALKLAVLEAIKLGYRHFDTAAMYG----------TEKALGEAIAEALR 79 (327)
Q Consensus 12 m~~~~Lg~t~g~~~vs~lglG~~~~~--~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----------sE~~lG~~L~~~~~ 79 (327)
|+||+||+| | ++||+||||||.+| .+.+++.++|+.|++.|||+||||+.|| ||..||++|++.
T Consensus 1 m~~r~lg~t-~-~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~-- 76 (346)
T PRK10625 1 MQYHRIPHS-S-LEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR-- 76 (346)
T ss_pred CCceecCCC-C-CccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc--
Confidence 789999999 9 99999999999987 4678899999999999999999999995 899999999853
Q ss_pred cCCCCCCCcEEEEeccCCC------------CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCC--CCCCCCCCCCC
Q 044053 80 LGLVSSREQLFITSKLWCQ------------NAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKP--GEVGFPVPKED 145 (327)
Q Consensus 80 ~g~~~~R~~v~I~tK~~~~------------~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~--~~~~~~~~~~~ 145 (327)
+ .|+++||+||++.. +.+++.+++++++||+|||+||||||++|||+.... +...+....+
T Consensus 77 -~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~- 151 (346)
T PRK10625 77 -G---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDS- 151 (346)
T ss_pred -C---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccc-
Confidence 3 69999999998531 357899999999999999999999999999975321 0000000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhC---C-CCCeeeecccCccccc--HHHHHHHHHcCCEEE
Q 044053 146 LLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFA---T-IPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVT 219 (327)
Q Consensus 146 ~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~ 219 (327)
.......++|++|++|+++||||+||+|||+..++++++..+ . ..+.++|++||+++++ .+++++|+++||+++
T Consensus 152 ~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~vi 231 (346)
T PRK10625 152 APAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELL 231 (346)
T ss_pred cCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEE
Confidence 001347899999999999999999999999999988776532 2 3577899999999876 579999999999999
Q ss_pred EecCCCCCCccCCCCc-----------ccC-------------hHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCC
Q 044053 220 AYSPLGAVGKIYGSNQ-----------VLE-------------NEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSL 273 (327)
Q Consensus 220 a~~pl~~~G~l~~~~~-----------~~~-------------~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~ 273 (327)
+|+||++ |+|+++.. .+. .+.+.++|+++|+|++|+||+|++++| +++|+|++
T Consensus 232 a~spL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~ 310 (346)
T PRK10625 232 AYSCLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGAT 310 (346)
T ss_pred EeccccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCC
Confidence 9999998 99876410 010 256889999999999999999999998 46899999
Q ss_pred CHHHHHHhhcccccccCHHHHHHHhcCCCCC
Q 044053 274 NLERMKQNLGIFDWKLTDDDYDKINQIPQHR 304 (327)
Q Consensus 274 ~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~ 304 (327)
+++|+++|+++++++|++++++.|+++....
T Consensus 311 ~~~~l~en~~a~~~~L~~~~~~~l~~~~~~~ 341 (346)
T PRK10625 311 TMEQLKTNIESLHLTLSEEVLAEIEAVHQVY 341 (346)
T ss_pred CHHHHHHHHhhccCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999986543
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.1e-58 Score=429.10 Aligned_cols=263 Identities=29% Similarity=0.437 Sum_probs=230.0
Q ss_pred eeecCCCCCCcccCcceeeccc-cC--CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCC
Q 044053 14 KLKLSSSSGHLNMPVIGLGCAV-DK--SDTDALKLAVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGLVSSRE 87 (327)
Q Consensus 14 ~~~Lg~t~g~~~vs~lglG~~~-~~--~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~~L~~~~~~g~~~~R~ 87 (327)
||+||+| | ++||+||||||. ++ .+.+++.++|+.|+++|||+||||+.|| ||++||++|++. +. .|+
T Consensus 1 ~r~lg~t-g-~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~--~R~ 73 (317)
T TIGR01293 1 YRNLGKS-G-LRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW--RRS 73 (317)
T ss_pred CcccCCC-C-CeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC--Ccc
Confidence 5789998 9 999999999997 44 4678899999999999999999999998 899999999864 43 699
Q ss_pred cEEEEeccCC-------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 044053 88 QLFITSKLWC-------QNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEE 160 (327)
Q Consensus 88 ~v~I~tK~~~-------~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (327)
++||+||++. .+.+++.+++++++||+|||+||||+|++|||++.. ..+++|++|++
T Consensus 74 ~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~----------------~~~e~~~aL~~ 137 (317)
T TIGR01293 74 SYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNT----------------PMEETVRAMTY 137 (317)
T ss_pred cEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCC----------------CHHHHHHHHHH
Confidence 9999999742 135789999999999999999999999999997532 37899999999
Q ss_pred HHHcCCccEEEeccccHHHHHHHHHhCC----CCCeeeecccCccccc---HHHHHHHHHcCCEEEEecCCCCCCccCCC
Q 044053 161 SQMLGLTKSIGLSNFSCKKIETILTFAT----IPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGAVGKIYGS 233 (327)
Q Consensus 161 l~~~Gkir~iGvS~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~~G~l~~~ 233 (327)
|+++||||+||+|||+.++++++...+. ++++++|++||++.++ .+++++|+++||++++|+||++ |+|+++
T Consensus 138 l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~ 216 (317)
T TIGR01293 138 VINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGK 216 (317)
T ss_pred HHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCC
Confidence 9999999999999999999888765432 5788999999999885 3699999999999999999998 999864
Q ss_pred Ccc---------------c------C--------hHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhh
Q 044053 234 NQV---------------L------E--------NEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNL 282 (327)
Q Consensus 234 ~~~---------------~------~--------~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl 282 (327)
... . . .+.+.++|+++|+|++|+||+|++++| +++|+|+++++|+++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~ 296 (317)
T TIGR01293 217 YDSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENL 296 (317)
T ss_pred CCCCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHH
Confidence 210 0 0 146889999999999999999999997 57999999999999999
Q ss_pred ccccc--ccCHHHHHHHhcC
Q 044053 283 GIFDW--KLTDDDYDKINQI 300 (327)
Q Consensus 283 ~a~~~--~L~~~~~~~l~~~ 300 (327)
++++. +||++++++|+++
T Consensus 297 ~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 297 GSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHhhccCCCCHHHHHHHHhh
Confidence 99986 9999999999875
No 8
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.8e-58 Score=432.12 Aligned_cols=271 Identities=22% Similarity=0.393 Sum_probs=234.6
Q ss_pred cccCeeecCCCCCCcccCcceeeccc-cC--CChHHHHHHHHHHHHcCCCEEeCCCCcC-----CHHHHHHHHHHHHhcC
Q 044053 10 FNVPKLKLSSSSGHLNMPVIGLGCAV-DK--SDTDALKLAVLEAIKLGYRHFDTAAMYG-----TEKALGEAIAEALRLG 81 (327)
Q Consensus 10 ~~m~~~~Lg~t~g~~~vs~lglG~~~-~~--~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-----sE~~lG~~L~~~~~~g 81 (327)
..|+||+||+| | ++||+||||||. ++ .+.+++.++|+.|++.|||+||||+.|| ||+.||++|++.. +
T Consensus 11 ~~m~~r~lg~t-g-~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~--~ 86 (346)
T PRK09912 11 GQMQYRYCGKS-G-LRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF--A 86 (346)
T ss_pred CCcceeecCCC-C-cccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc--c
Confidence 45899999999 9 999999999996 55 3567789999999999999999999998 6999999998531 1
Q ss_pred CCCCCCcEEEEeccCC--------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHH
Q 044053 82 LVSSREQLFITSKLWC--------QNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRG 153 (327)
Q Consensus 82 ~~~~R~~v~I~tK~~~--------~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 153 (327)
. .|+++||+||++. ...+++.+++++++||+|||+||||+|++|||+... ..++
T Consensus 87 ~--~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~----------------~~~e 148 (346)
T PRK09912 87 A--YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENT----------------PMEE 148 (346)
T ss_pred C--CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC----------------CHHH
Confidence 1 5999999999742 134688999999999999999999999999996532 3789
Q ss_pred HHHHHHHHHHcCCccEEEeccccHHHHHHHHH---hCCCCCeeeecccCccccc---HHHHHHHHHcCCEEEEecCCCCC
Q 044053 154 VWEAMEESQMLGLTKSIGLSNFSCKKIETILT---FATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGAV 227 (327)
Q Consensus 154 ~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~~ 227 (327)
+|++|++|+++||||+||||||++++++++.+ ...+++.++|++||++++. .+++++|+++||++++|+||++
T Consensus 149 ~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~- 227 (346)
T PRK09912 149 TASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ- 227 (346)
T ss_pred HHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-
Confidence 99999999999999999999999998876654 3456788999999999874 4699999999999999999998
Q ss_pred CccCCCCc----------------------ccC------hHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHH
Q 044053 228 GKIYGSNQ----------------------VLE------NEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLER 277 (327)
Q Consensus 228 G~l~~~~~----------------------~~~------~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~ 277 (327)
|+|+++.. ... .+.+.++|+++|+|++|+||+|++++| +++|+|+++++|
T Consensus 228 G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~q 307 (346)
T PRK09912 228 GLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQ 307 (346)
T ss_pred ccccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHH
Confidence 99986420 000 156888999999999999999999998 678999999999
Q ss_pred HHHhhcccc-cccCHHHHHHHhcCCCC
Q 044053 278 MKQNLGIFD-WKLTDDDYDKINQIPQH 303 (327)
Q Consensus 278 l~enl~a~~-~~L~~~~~~~l~~~~~~ 303 (327)
+++|++++. ++|++++++.|+++.++
T Consensus 308 l~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 308 LEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 999999984 79999999999998754
No 9
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.8e-57 Score=411.33 Aligned_cols=262 Identities=36% Similarity=0.677 Sum_probs=235.3
Q ss_pred CeeecCCCCCCcccCcceeeccccCCChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 044053 13 PKLKLSSSSGHLNMPVIGLGCAVDKSDTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFIT 92 (327)
Q Consensus 13 ~~~~Lg~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~ 92 (327)
++++|.+ | ++||+||||||++ +.+++.++|++|++.|||+||||+.||+|+.+|++|+.. ++ .|+++||+
T Consensus 5 ~~~~l~~--g-~~v~~lglG~~~~--~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~~~i~ 74 (275)
T PRK11565 5 TVIKLQD--G-NVMPQLGLGVWQA--SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SV--AREELFIT 74 (275)
T ss_pred ceEEcCC--C-CccCCcceECccC--CHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CC--CHHHEEEE
Confidence 3566755 9 9999999999984 578899999999999999999999999999999999864 44 69999999
Q ss_pred eccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEe
Q 044053 93 SKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGL 172 (327)
Q Consensus 93 tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGv 172 (327)
||++.. +++.+++++++||+|||+||||+|++|||++.. ....++|++|++|+++||||+|||
T Consensus 75 tK~~~~--~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~---------------~~~~~~~~~l~~l~~~G~ir~iGv 137 (275)
T PRK11565 75 TKLWND--DHKRPREALEESLKKLQLDYVDLYLMHWPVPAI---------------DHYVEAWKGMIELQKEGLIKSIGV 137 (275)
T ss_pred EEecCc--chHHHHHHHHHHHHHhCCCceEEEEecCCCCCc---------------CcHHHHHHHHHHHHHcCCeeEEee
Confidence 998753 468999999999999999999999999996521 126799999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCC
Q 044053 173 SNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKT 252 (327)
Q Consensus 173 S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s 252 (327)
|||++++++++++.+.+.|+++|++|+++.++.+++++|+++||++++|+||++ |. ...+..+.+.++|+++|+|
T Consensus 138 Sn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~----~~~~~~~~l~~ia~~~g~s 212 (275)
T PRK11565 138 CNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GG----KGVFDQKVIRDLADKYGKT 212 (275)
T ss_pred ccCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CC----cccccCHHHHHHHHHhCCC
Confidence 999999999999878788999999999999888999999999999999999986 53 1234468899999999999
Q ss_pred HHHHHHHHHHhcCCEEeecCCCHHHHHHhhcccccccCHHHHHHHhcCCCCCcc
Q 044053 253 VAQVSLRWIVEQGATVVVKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQHRLI 306 (327)
Q Consensus 253 ~aq~al~w~l~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~ 306 (327)
++|+||+|+++++.++|||+++++|+++|+++++++|+++++++|+++....+.
T Consensus 213 ~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~~ 266 (275)
T PRK11565 213 PAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKRL 266 (275)
T ss_pred HHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCCc
Confidence 999999999999988999999999999999999999999999999999876554
No 10
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.1e-56 Score=412.37 Aligned_cols=269 Identities=21% Similarity=0.321 Sum_probs=229.5
Q ss_pred eeecCCCCCCcccCcceeeccccC-----CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCC
Q 044053 14 KLKLSSSSGHLNMPVIGLGCAVDK-----SDTDALKLAVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGLVSS 85 (327)
Q Consensus 14 ~~~Lg~t~g~~~vs~lglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~~L~~~~~~g~~~~ 85 (327)
||+||+| | ++||+||||||+++ .+.+++.++|++|++.|||+||||+.|| ||+.+|++|++. +. .
T Consensus 1 ~r~lg~t-~-~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~--~ 73 (314)
T PLN02587 1 LRELGST-G-LKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GI--P 73 (314)
T ss_pred CCcCCCC-C-CcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CC--C
Confidence 6889999 9 99999999999876 4678899999999999999999999997 799999999864 33 6
Q ss_pred CCcEEEEeccCC----CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 044053 86 REQLFITSKLWC----QNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEES 161 (327)
Q Consensus 86 R~~v~I~tK~~~----~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 161 (327)
|+++||+||++. .+.+++.+++++++||+|||+||||+|++|+|+...+ .....++|++|++|
T Consensus 74 R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~-------------~~~~~~~~~~l~~l 140 (314)
T PLN02587 74 REKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL-------------DQIVNETIPALQKL 140 (314)
T ss_pred cceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch-------------hhhHHHHHHHHHHH
Confidence 999999999874 2467899999999999999999999999999964211 12356899999999
Q ss_pred HHcCCccEEEeccccHHHHHHHHHhCC---CCCeeeecccCccccc-HHHHHHHHHcCCEEEEecCCCCCCccCCCCcc-
Q 044053 162 QMLGLTKSIGLSNFSCKKIETILTFAT---IPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQV- 236 (327)
Q Consensus 162 ~~~Gkir~iGvS~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~- 236 (327)
+++||||+||+|||++++++.+.+... +.++++|+.|++.++. .+++++|+++||++++|+||++ |+|+++...
T Consensus 141 ~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~ 219 (314)
T PLN02587 141 KESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPE 219 (314)
T ss_pred HHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCC
Confidence 999999999999999998887765432 3555678899887654 6899999999999999999998 999864210
Q ss_pred c--C-------hHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhcccc----cccCHHHHHHHhcCC
Q 044053 237 L--E-------NEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFD----WKLTDDDYDKINQIP 301 (327)
Q Consensus 237 ~--~-------~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~----~~L~~~~~~~l~~~~ 301 (327)
. . .+.+.++|+++|+|++|+||+|++++| +++|+|+++++|+++|++++. .+|+++++++|+++.
T Consensus 220 ~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~ 299 (314)
T PLN02587 220 WHPAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAIL 299 (314)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 0 0 134678999999999999999999998 578999999999999999976 379999999999877
Q ss_pred CC
Q 044053 302 QH 303 (327)
Q Consensus 302 ~~ 303 (327)
..
T Consensus 300 ~~ 301 (314)
T PLN02587 300 AP 301 (314)
T ss_pred cc
Confidence 53
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.8e-55 Score=402.07 Aligned_cols=263 Identities=38% Similarity=0.618 Sum_probs=237.0
Q ss_pred eeecCCCCCCcccCcceeeccccCC---ChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCC
Q 044053 14 KLKLSSSSGHLNMPVIGLGCAVDKS---DTDALKLAVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGLVSSRE 87 (327)
Q Consensus 14 ~~~Lg~t~g~~~vs~lglG~~~~~~---~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~~L~~~~~~g~~~~R~ 87 (327)
+|+||+| | ++||+|||||+.++. +.+++.++++.|++.|||+||||+.|| ||+.+|++|++. + .|+
T Consensus 1 ~r~lg~t-g-~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~---~R~ 72 (285)
T cd06660 1 YRTLGKT-G-LKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G---PRE 72 (285)
T ss_pred CcccCCC-C-ceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C---CcC
Confidence 5789998 9 999999999999873 678999999999999999999999999 999999999964 1 399
Q ss_pred cEEEEeccCCCC-----CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 044053 88 QLFITSKLWCQN-----AHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQ 162 (327)
Q Consensus 88 ~v~I~tK~~~~~-----~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 162 (327)
++||+||++... .+++.+++++++||++||+||||+|++|+|+.... ...++|++|+++|
T Consensus 73 ~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~---------------~~~~~~~~l~~l~ 137 (285)
T cd06660 73 EVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP---------------DIEETLRALEELV 137 (285)
T ss_pred cEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC---------------CHHHHHHHHHHHH
Confidence 999999997654 57899999999999999999999999999965321 3789999999999
Q ss_pred HcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccH--HHHHHHHHcCCEEEEecCCCCCCccCCCCcccC--
Q 044053 163 MLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQR--KLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLE-- 238 (327)
Q Consensus 163 ~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~--~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~-- 238 (327)
++||||+||||||+.+.++++++.+..+|+++|++||++++.. +++++|+++||++++|+||++ |.+++......
T Consensus 138 ~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~ 216 (285)
T cd06660 138 KEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPP 216 (285)
T ss_pred HcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCC
Confidence 9999999999999999999999987788999999999999885 499999999999999999998 88875433221
Q ss_pred -----hHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhcccccccCHHHHHHHhcC
Q 044053 239 -----NEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDWKLTDDDYDKINQI 300 (327)
Q Consensus 239 -----~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~ 300 (327)
...+..++++++++++|+|++|++++| +++|+|+++++|+++|+++..++|++++++.|+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 217 PEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred ChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 366889999999999999999999996 78999999999999999999899999999999863
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.9e-54 Score=391.80 Aligned_cols=252 Identities=23% Similarity=0.353 Sum_probs=219.5
Q ss_pred CCcccCcceeeccccCC--------ChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCCcEE
Q 044053 22 GHLNMPVIGLGCAVDKS--------DTDALKLAVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGLVSSREQLF 90 (327)
Q Consensus 22 g~~~vs~lglG~~~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~~L~~~~~~g~~~~R~~v~ 90 (327)
| ++||+||||||+++. +++++.++|+.|+++|||+||||+.|| +|+.+|++|+. .|+++|
T Consensus 14 g-~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~--------~R~~~~ 84 (290)
T PRK10376 14 G-RSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP--------YPDDLT 84 (290)
T ss_pred C-eeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc--------CCCeEE
Confidence 6 999999999998751 467899999999999999999999998 69999999962 699999
Q ss_pred EEeccCC---------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 044053 91 ITSKLWC---------QNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEES 161 (327)
Q Consensus 91 I~tK~~~---------~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 161 (327)
|+||++. .+.+++.+++++++||+|||+||||+|++|+++.... |. .....++|++|++|
T Consensus 85 i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~-----p~------~~~~~~~~~~l~~l 153 (290)
T PRK10376 85 IVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHG-----PA------EGSIEEPLTVLAEL 153 (290)
T ss_pred EEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCC-----CC------CCCHHHHHHHHHHH
Confidence 9999742 3567899999999999999999999999998632110 00 12377899999999
Q ss_pred HHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc-HHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChH
Q 044053 162 QMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENE 240 (327)
Q Consensus 162 ~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~ 240 (327)
+++||||+||||||+.++++++.+.+ ++.++|++||++.+. .+++++|+++||++++|+||++ +. ....+
T Consensus 154 ~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~~------~~~~~ 224 (290)
T PRK10376 154 QRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-FT------PLQSS 224 (290)
T ss_pred HHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-CC------hhhhH
Confidence 99999999999999999999988876 457899999999876 6799999999999999999974 31 12357
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhcccccccCHHHHHHHhcCCC
Q 044053 241 ALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQ 302 (327)
Q Consensus 241 ~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 302 (327)
.+.++|+++|+|++|+||+|+++++ +++|+|+++++|+++|+++++++|++++++.|+++.+
T Consensus 225 ~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 225 TLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 8999999999999999999999884 7889999999999999999999999999999998755
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=5.6e-54 Score=391.79 Aligned_cols=253 Identities=34% Similarity=0.608 Sum_probs=218.4
Q ss_pred cceeeccccC---CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCCcEEEEecc-----C
Q 044053 28 VIGLGCAVDK---SDTDALKLAVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGLVSSREQLFITSKL-----W 96 (327)
Q Consensus 28 ~lglG~~~~~---~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~-----~ 96 (327)
+||||||+++ .+.+++.++|+.|++.|||+||||+.|| ||+.+|++|++. +. +|++++|+||+ +
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~--~r~~~~i~tK~~~~~~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RV--PRDDIFISTKVYGDGKP 75 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SS--TGGGSEEEEEEESSSST
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---cc--ccccccccccccccccc
Confidence 5899999985 7889999999999999999999999993 899999999972 33 89999999999 5
Q ss_pred CCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecccc
Q 044053 97 CQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS 176 (327)
Q Consensus 97 ~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~ 176 (327)
....+++.+++++++||+|||+||||+|++|+|+.... ...++|++|++|+++|+||+||||||+
T Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~---------------~~~~~~~~l~~l~~~G~ir~iGvs~~~ 140 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED---------------ALEEVWEALEELKKEGKIRHIGVSNFS 140 (283)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS---------------HHHHHHHHHHHHHHTTSEEEEEEES--
T ss_pred cccccccccccccccccccccccchhcccccccccccc---------------ccchhhhhhhhcccccccccccccccc
Confidence 56788999999999999999999999999999976421 389999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCeeeecccCccc--ccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcc--------------cChH
Q 044053 177 CKKIETILTFATIPPSINQVEMHPVW--QQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQV--------------LENE 240 (327)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~--------------~~~~ 240 (327)
++.++++.....++|+++|++||++. ...+++++|+++||++++|+|+++ |+|++.... ...+
T Consensus 141 ~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (283)
T PF00248_consen 141 PEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELAD 219 (283)
T ss_dssp HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhhh
Confidence 99999997777789999999999993 348899999999999999999998 998754211 3457
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhcccccccCHHHHHHHhcCC
Q 044053 241 ALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDWKLTDDDYDKINQIP 301 (327)
Q Consensus 241 ~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~ 301 (327)
.+.++++++|+|++|+||+|+++++ .++|+|+++++|+++|+++++++||++++++|+++.
T Consensus 220 ~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 220 ALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 8999999999999999999999875 899999999999999999999999999999999863
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.3e-52 Score=383.26 Aligned_cols=251 Identities=18% Similarity=0.198 Sum_probs=214.3
Q ss_pred CCcccCcceeeccccCC------------ChHHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHHHHHHHHHhcCCCCCCCc
Q 044053 22 GHLNMPVIGLGCAVDKS------------DTDALKLAVLEAIKLGYRHFDTAAMYG-TEKALGEAIAEALRLGLVSSREQ 88 (327)
Q Consensus 22 g~~~vs~lglG~~~~~~------------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~lG~~L~~~~~~g~~~~R~~ 88 (327)
| ++||+||||||.+|. +++++.++|+.|++.|||+||||+.|| ||..+|++|+.. .+++
T Consensus 2 ~-~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-------~~~~ 73 (292)
T PRK14863 2 S-SPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-------VPFR 73 (292)
T ss_pred C-CcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-------CceE
Confidence 6 899999999998862 578899999999999999999999999 899999999731 4567
Q ss_pred EEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 044053 89 LFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTK 168 (327)
Q Consensus 89 v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir 168 (327)
++|+||.. +.+++.+++++++||+|||+||||+|++|+|+.... ....++|++|++|+++||||
T Consensus 74 ~~i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~--------------~~~~~~~~~l~~l~~~Gkir 137 (292)
T PRK14863 74 VTLSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELFG--------------PHGAALWERLQALKDQGLFA 137 (292)
T ss_pred eecccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC--------------cchHHHHHHHHHHHHcCCcc
Confidence 89999852 356899999999999999999999999999864210 11357899999999999999
Q ss_pred EEEeccccHHHHHHHHHhCCCCCeeeecccCccccc---HHHHHHHHHcCCEEEEecCCCCCCccCCCCcc----c----
Q 044053 169 SIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQV----L---- 237 (327)
Q Consensus 169 ~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~----~---- 237 (327)
+||||||+++++.++.. ..+|+++|++||+++++ .+++++|+++||++++|+||++ |+|++.... .
T Consensus 138 ~iGvSn~~~~~~~~~~~--~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~ 214 (292)
T PRK14863 138 KIGVSAHASDDPVGVAR--RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGAS 214 (292)
T ss_pred eEeeeccCHHHHHHHHh--cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhh
Confidence 99999999999887764 35788999999999986 3599999999999999999998 998754211 1
Q ss_pred -ChHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhcccccccCHHHHHHHhc
Q 044053 238 -ENEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDWKLTDDDYDKINQ 299 (327)
Q Consensus 238 -~~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~ 299 (327)
....+.+++++++++++|+||+|++++| +++|+|+++++|+++|+++.+.+++++.+++|..
T Consensus 215 ~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 215 GRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 1244667788889999999999999998 6789999999999999999988999988877763
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=8.6e-52 Score=352.75 Aligned_cols=268 Identities=28% Similarity=0.452 Sum_probs=239.4
Q ss_pred cCeeecCCCCCCcccCcceeeccccC---CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCC
Q 044053 12 VPKLKLSSSSGHLNMPVIGLGCAVDK---SDTDALKLAVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGLVSS 85 (327)
Q Consensus 12 m~~~~Lg~t~g~~~vs~lglG~~~~~---~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~~L~~~~~~g~~~~ 85 (327)
|++.+|++. | +++|++.+|+|++. ...++....++.|++.|||+||-|+.|| .|+++|.+|+.. .+ -
T Consensus 1 m~rI~l~~~-~-~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~--p~---l 73 (298)
T COG4989 1 MQRITLAPD-G-LEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA--PG---L 73 (298)
T ss_pred CceEEecCC-C-ccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC--hh---h
Confidence 678999986 8 99999999999976 5667899999999999999999999999 799999999853 23 7
Q ss_pred CCcEEEEeccCC------------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHH
Q 044053 86 REQLFITSKLWC------------QNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRG 153 (327)
Q Consensus 86 R~~v~I~tK~~~------------~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 153 (327)
|+++.|.||++. .+.+.++|.+++|+||+||+|||+|+++||+||+. ++.++
T Consensus 74 RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL----------------md~ee 137 (298)
T COG4989 74 REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL----------------MDAEE 137 (298)
T ss_pred hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc----------------CCHHH
Confidence 999999999852 36789999999999999999999999999999873 56899
Q ss_pred HHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc---HHHHHHHHHcCCEEEEecCCCCCCcc
Q 044053 154 VWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGAVGKI 230 (327)
Q Consensus 154 ~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~~G~l 230 (327)
+.+|+..|++.||||++|||||++.+++-+.+....+.+.||+++|++... .+.+++|+.+.|.++|||||+++|++
T Consensus 138 VAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F 217 (298)
T COG4989 138 VAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLF 217 (298)
T ss_pred HHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccc
Confidence 999999999999999999999999999998888888899999999999876 56999999999999999999983444
Q ss_pred CCCCccc--ChHHHHHHHHHcC-CCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhcccccccCHHHHHHHhcCCCC
Q 044053 231 YGSNQVL--ENEALKEIAKAHG-KTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQH 303 (327)
Q Consensus 231 ~~~~~~~--~~~~l~~ia~~~~-~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~ 303 (327)
.+ ...+ -...+..+|.++| .|..+++++|++.+| ..+|+|+.+++++++.+++.++.||.++|-+|-.....
T Consensus 218 ~g-~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 218 LG-DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred cC-CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 44 2222 2478999999999 799999999999999 68899999999999999999999999999999766543
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.9e-47 Score=342.04 Aligned_cols=264 Identities=22% Similarity=0.357 Sum_probs=226.9
Q ss_pred cCeeecCCCCCCcccCcceeeccccCC------ChHHHHHHHHHHHHcCCCEEeCCCCc--C-CHHHHHHHHHHHHhcCC
Q 044053 12 VPKLKLSSSSGHLNMPVIGLGCAVDKS------DTDALKLAVLEAIKLGYRHFDTAAMY--G-TEKALGEAIAEALRLGL 82 (327)
Q Consensus 12 m~~~~Lg~t~g~~~vs~lglG~~~~~~------~~~~~~~~l~~A~~~Gi~~~DTA~~Y--g-sE~~lG~~L~~~~~~g~ 82 (327)
|.||++++| | .++|.+|||||++.. +.+.+.++|++|++.||||||||..| | ||..+|++|++.
T Consensus 1 Mlyr~~~k~-g-~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~----- 73 (391)
T COG1453 1 MLYRKFPKT-G-DELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG----- 73 (391)
T ss_pred CchhhcCCC-C-cccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc-----
Confidence 789999999 9 999999999999873 78899999999999999999999999 6 999999999974
Q ss_pred CCCCCcEEEEeccCCC-CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 044053 83 VSSREQLFITSKLWCQ-NAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEES 161 (327)
Q Consensus 83 ~~~R~~v~I~tK~~~~-~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 161 (327)
.|++|+++||+... -.+++.+++-++++|++||+||+|+|+||...... +......++++.++++
T Consensus 74 --~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~------------~~k~~~~g~~df~~ka 139 (391)
T COG1453 74 --YREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTET------------WEKIERLGVFDFLEKA 139 (391)
T ss_pred --ccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHH------------HHHHHccChHHHHHHH
Confidence 89999999999643 23579999999999999999999999999885421 1111223478999999
Q ss_pred HHcCCccEEEecccc-HHHHHHHHHhCCCCCeeeecccCccccc----HHHHHHHHHcCCEEEEecCCCCCCccCCCCcc
Q 044053 162 QMLGLTKSIGLSNFS-CKKIETILTFATIPPSINQVEMHPVWQQ----RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQV 236 (327)
Q Consensus 162 ~~~Gkir~iGvS~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~ 236 (327)
|++||||++|+|.|+ .+.+.+++.... ++++|++||.++++ .+.+++|.++|++|+.++|+.+ |-|...
T Consensus 140 k~eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g-G~l~~~--- 213 (391)
T COG1453 140 KAEGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG-GGLLYN--- 213 (391)
T ss_pred HhcCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-CCcccC---
Confidence 999999999999998 677888887664 67999999999876 3789999999999999999998 554331
Q ss_pred cChHHHHHHHHHcC--CCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhccccc--c-cCHHHHHHHhcCCCC
Q 044053 237 LENEALKEIAKAHG--KTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDW--K-LTDDDYDKINQIPQH 303 (327)
Q Consensus 237 ~~~~~l~~ia~~~~--~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~--~-L~~~~~~~l~~~~~~ 303 (327)
-.+++.+++++++ .||+..|+||++++| .++++|+++++|++||++.++. + ||++|++.|.++.+.
T Consensus 214 -vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~ 286 (391)
T COG1453 214 -VPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEI 286 (391)
T ss_pred -CCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHH
Confidence 1368899999976 689999999999999 6889999999999999988763 3 999999888876543
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.8e-45 Score=315.08 Aligned_cols=261 Identities=23% Similarity=0.289 Sum_probs=218.4
Q ss_pred ccccCeeecCCCCCCcccCcceeeccccC-----CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhc
Q 044053 9 VFNVPKLKLSSSSGHLNMPVIGLGCAVDK-----SDTDALKLAVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRL 80 (327)
Q Consensus 9 ~~~m~~~~Lg~t~g~~~vs~lglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~~L~~~~~~ 80 (327)
++.|+||.||+| | ++||+||||+..++ .++++....|..|++.|||+|||++.|| ||..+|.++++.
T Consensus 19 vrrmeyR~lg~t-g-l~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~v--- 93 (342)
T KOG1576|consen 19 VRRMEYRQLGST-G-LRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDV--- 93 (342)
T ss_pred HHHHHHhhcCCC-c-ceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhC---
Confidence 456999999999 9 99999999998765 4778888888889999999999999999 899999999975
Q ss_pred CCCCCCCcEEEEeccCC--------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHH
Q 044053 81 GLVSSREQLFITSKLWC--------QNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYR 152 (327)
Q Consensus 81 g~~~~R~~v~I~tK~~~--------~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 152 (327)
+|+..||+||+++ .+++++.+++++++||+||++||+|++++|..+.... .+....
T Consensus 94 ----PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~------------ld~vl~ 157 (342)
T KOG1576|consen 94 ----PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPN------------LDIVLN 157 (342)
T ss_pred ----ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccccc------------ccHHHH
Confidence 9999999999965 3678899999999999999999999999998865321 123478
Q ss_pred HHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeee--cccCccccc-HHHHHHHHHcCCEEEEecCCCCCCc
Q 044053 153 GVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQ--VEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGAVGK 229 (327)
Q Consensus 153 ~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q--~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~~G~ 229 (327)
+++.+|+++|++||||+||++.+..+.+.++++...-..+++- ..|++.+.. -..+++.+.+|++|+.-++++. |+
T Consensus 158 Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gL 236 (342)
T KOG1576|consen 158 ETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GL 236 (342)
T ss_pred HHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HH
Confidence 9999999999999999999999999999999977654444443 445444333 4567788899999999999998 99
Q ss_pred cCCCCcc---cCh-------HHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhcccccccCH
Q 044053 230 IYGSNQV---LEN-------EALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDWKLTD 291 (327)
Q Consensus 230 l~~~~~~---~~~-------~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~ 291 (327)
|+...+. ... .+-.++|++.|+..+.+|+.|.++.+ .++++|+++.++++.|+++....||.
T Consensus 237 Lt~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 237 LTNQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred hhcCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 9854321 112 34456677889999999999999998 78999999999999999976557777
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.48 E-value=3.9e-07 Score=78.43 Aligned_cols=163 Identities=17% Similarity=0.220 Sum_probs=104.7
Q ss_pred CCCCcCCHHHHHHHHHHHHhc--CCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC----CCceeEE------Eee
Q 044053 60 TAAMYGTEKALGEAIAEALRL--GLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQ----MEYLDLY------LVH 127 (327)
Q Consensus 60 TA~~YgsE~~lG~~L~~~~~~--g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~----~d~iDl~------~lH 127 (327)
|++.-.+|+.=+...+..=+. .+...++++-|..|.+..++.-++++...++-++-+- +.-+|.+ ++|
T Consensus 46 t~~ete~eelh~cvq~~lnEssq~~~d~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~ 125 (285)
T KOG3023|consen 46 TGDETENEELHICVQVPLNESSQKLDDKQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPH 125 (285)
T ss_pred cCccchhHHHHHHHHHhhccccccCcccccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 444333666655544432000 1111466777878877666666667766666554432 1223322 222
Q ss_pred cCCCCCCCCCC----CCCCCC--CCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcc
Q 044053 128 LPISSKPGEVG----FPVPKE--DLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPV 201 (327)
Q Consensus 128 ~p~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~ 201 (327)
--+-..++..+ ++..++ ........+.|+.||+++.+|||..||+|.|+..++++++..+.+.|.++|+++.-+
T Consensus 126 ~~~l~v~~lssv~ia~~sied~~n~~~e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~c 205 (285)
T KOG3023|consen 126 ITFLKVSGLSSVNIAYDSIEDIPNQEIESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQC 205 (285)
T ss_pred ceeecccCccchhccCChhhhcchhhHHHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeecccc
Confidence 11111111111 011111 011234678999999999999999999999999999999999999999999999888
Q ss_pred ccc-HHHHHHHHHcCCEEEEec
Q 044053 202 WQQ-RKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 202 ~~~-~~ll~~~~~~gi~v~a~~ 222 (327)
+.- +++.++|.+++|.+..++
T Consensus 206 CvvPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 206 CVVPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred ccCCHHHHHHhhhcceeeeecC
Confidence 765 899999999999999875
No 19
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=92.60 E-value=9.6 Score=36.20 Aligned_cols=142 Identities=18% Similarity=0.265 Sum_probs=87.1
Q ss_pred eccccCCChHHHHHHHHHHHHcCCCEE-eCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEecc----------CCCCC
Q 044053 32 GCAVDKSDTDALKLAVLEAIKLGYRHF-DTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKL----------WCQNA 100 (327)
Q Consensus 32 G~~~~~~~~~~~~~~l~~A~~~Gi~~~-DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~----------~~~~~ 100 (327)
||+....+.+.-.+-++.|++.|-..+ |-+ ..|.-..+-+.+-+. ..+-|-|=- ...+.
T Consensus 68 GtS~~~~d~~~E~~K~~~A~~~GADtiMDLS-tGgdl~~iR~~il~~---------s~vpvGTVPiYqa~~~~~~~~~~m 137 (423)
T TIGR00190 68 GTSADTSDIEEEVEKALIAIKYGADTVMDLS-TGGDLDEIRKAILDA---------VPVPVGTVPIYQAAEKVHGAVEDM 137 (423)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHc---------CCCCccCccHHHHHHHhcCChhhC
Confidence 344322444555556899999997644 443 334433333333221 111111110 12356
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHH
Q 044053 101 HRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKI 180 (327)
Q Consensus 101 ~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l 180 (327)
+++.+.+.+|+..+ |-+|.+-+|.-. ..+.++.++++|+ ..|+-+-...-+
T Consensus 138 t~d~~~~~ie~qa~----dGVDfmTiH~Gi-----------------------~~~~~~~~~~~~R--~~giVSRGGs~~ 188 (423)
T TIGR00190 138 DEDDMFRAIEKQAK----DGVDFMTIHAGV-----------------------LLEYVERLKRSGR--ITGIVSRGGAIL 188 (423)
T ss_pred CHHHHHHHHHHHHH----hCCCEEEEccch-----------------------hHHHHHHHHhCCC--ccCeecCcHHHH
Confidence 77888888888776 668999999752 3478899999995 556666666665
Q ss_pred HHHHHhCCCCCeeeecccCccccc-HHHHHHHHHcCCEEEE
Q 044053 181 ETILTFATIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTA 220 (327)
Q Consensus 181 ~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~a 220 (327)
..++...+ .=||++.+ .++++.|+++++.+--
T Consensus 189 ~~WM~~~~--------~ENPlye~fD~lLeI~~~yDVtlSL 221 (423)
T TIGR00190 189 AAWMLHHH--------KENPLYKNFDYILEIAKEYDVTLSL 221 (423)
T ss_pred HHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeec
Confidence 55544332 44667666 6799999999999843
No 20
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=91.53 E-value=13 Score=35.46 Aligned_cols=142 Identities=18% Similarity=0.253 Sum_probs=86.1
Q ss_pred eeccccCCChHHHHHHHHHHHHcCCCEE-eCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEec-------------cC
Q 044053 31 LGCAVDKSDTDALKLAVLEAIKLGYRHF-DTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSK-------------LW 96 (327)
Q Consensus 31 lG~~~~~~~~~~~~~~l~~A~~~Gi~~~-DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK-------------~~ 96 (327)
+||+....+.+.-.+-++.|++.|-..+ |-+ ..|.-..+-+.+-+. ..+-|-|= ..
T Consensus 67 IGtS~~~~d~~~E~~K~~~A~~~GADtiMDLS-tggdl~~iR~~il~~---------s~vpvGTVPiYqa~~~~~~k~~~ 136 (431)
T PRK13352 67 IGTSSDISDIEEELEKAKVAVKYGADTIMDLS-TGGDLDEIRRAIIEA---------SPVPVGTVPIYQAAVEAARKYGS 136 (431)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHc---------CCCCCcChhHHHHHHHHHhcCCC
Confidence 3444332455555566899999997654 433 223332333333211 11111110 02
Q ss_pred CCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecccc
Q 044053 97 CQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS 176 (327)
Q Consensus 97 ~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~ 176 (327)
..+.+++.+...+|+..+ |-+|.+-+|.-. ..+.++.++++|+ -.|+-+-.
T Consensus 137 ~~~mt~d~~~~~ie~qa~----~GVDfmTiHcGi-----------------------~~~~~~~~~~~~R--~~giVSRG 187 (431)
T PRK13352 137 VVDMTEDDLFDVIEKQAK----DGVDFMTIHCGV-----------------------TRETLERLKKSGR--IMGIVSRG 187 (431)
T ss_pred hhhCCHHHHHHHHHHHHH----hCCCEEEEccch-----------------------hHHHHHHHHhcCC--ccCeecCC
Confidence 235677888888888776 668999999752 3478889999985 45666666
Q ss_pred HHHHHHHHHhCCCCCeeeecccCccccc-HHHHHHHHHcCCEEE
Q 044053 177 CKKIETILTFATIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVT 219 (327)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~ 219 (327)
..-+..++...+ .=||++.+ .++++.|+++++.+-
T Consensus 188 Gs~~~~WM~~n~--------~ENPlye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 188 GSFLAAWMLHNN--------KENPLYEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeee
Confidence 666555544322 44677666 789999999999984
No 21
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=91.14 E-value=3 Score=35.58 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHH
Q 044053 106 IPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILT 185 (327)
Q Consensus 106 ~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~ 185 (327)
...+++.|..+.-+..|.+.+..--. ......+.|+++.+-|+---|++.||.-+..+.-+-
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtLQ------------------~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTLQ------------------AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHHH------------------hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHH
Confidence 33456667777767777777664311 133344668888889998889999999777665555
Q ss_pred hCCCCCeeeecccCccccc-------HHHHHHHHHcCCEEEEecCCCC
Q 044053 186 FATIPPSINQVEMHPVWQQ-------RKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 186 ~~~~~~~~~q~~~~~~~~~-------~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
..+--|+.-+++|+-++.. ++.-++|++.||.|.-..++..
T Consensus 123 ~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 123 LRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred hcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 3444466677788766543 7899999999999999999876
No 22
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=90.33 E-value=3.1 Score=37.37 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=70.0
Q ss_pred HHHHHHcCCccEEEe-ccccHHHHHHHHHhCCCCCeeeecccCccccc--HHHHHHHHHcCCEEEEecCCCCCCccCCCC
Q 044053 158 MEESQMLGLTKSIGL-SNFSCKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSN 234 (327)
Q Consensus 158 l~~l~~~Gkir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~ 234 (327)
|.+..++|+. -+|+ .......+.+++..++++++++=.|..+++.+ ..++..|+..|+..+++-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4455556875 3554 33444566677777889999999999999776 6788899999999998877643
Q ss_pred cccChHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhccccc
Q 044053 235 QVLENEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDW 287 (327)
Q Consensus 235 ~~~~~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~ 287 (327)
...++.+|..| .+++|-..|.+++++.+++..+
T Consensus 81 --------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 --------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred --------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 12345556666 4566777777777777666554
No 23
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=89.11 E-value=5.2 Score=36.18 Aligned_cols=102 Identities=10% Similarity=-0.005 Sum_probs=71.5
Q ss_pred HHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc--HHHHHHHHHcCCEEEEecCCCCCCccCCCCc
Q 044053 158 MEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQ 235 (327)
Q Consensus 158 l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~ 235 (327)
|.+..++|+.-.-.........+.+++..++++++++=.|..+++.+ ..++..++..|+..++.-|-..
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~--------- 79 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS--------- 79 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC---------
Confidence 44555568754323344444556666677789999999999999776 5688889999998888776532
Q ss_pred ccChHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhccccc
Q 044053 236 VLENEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDW 287 (327)
Q Consensus 236 ~~~~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~ 287 (327)
...++.+|..| .+++|-..|.++.++.+++..+
T Consensus 80 -------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 -------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred -------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 12456677777 4677777888888887777765
No 24
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=87.78 E-value=6 Score=35.35 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=66.3
Q ss_pred HHHHcCCccEEEe-ccccHHHHHHHHHhCCCCCeeeecccCccccc--HHHHHHHHHcCCEEEEecCCCCCCccCCCCcc
Q 044053 160 ESQMLGLTKSIGL-SNFSCKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQV 236 (327)
Q Consensus 160 ~l~~~Gkir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~ 236 (327)
+-.++|+.- +|+ ++.....+.+++..++++++++=.|..+++.+ ..++..|+..|+..+++-|-..
T Consensus 5 ~~l~~g~~~-~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~---------- 73 (249)
T TIGR03239 5 QDLLARETL-IGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE---------- 73 (249)
T ss_pred HHHHcCCce-EEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC----------
Confidence 334457643 443 34444566666777889999999999998776 6788888999999888876643
Q ss_pred cChHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhccccc
Q 044053 237 LENEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDW 287 (327)
Q Consensus 237 ~~~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~ 287 (327)
...++.+|..| .+++|-..|.++.++.+++..+
T Consensus 74 ------------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ------------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ------------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 11344555556 3566666777777776665544
No 25
>PRK08392 hypothetical protein; Provisional
Probab=86.62 E-value=20 Score=31.00 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCCEEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCCcEEEE--eccCCCCCChhhHHHHHHHHHHHhCC
Q 044053 43 LKLAVLEAIKLGYRHFDTAAMYG--TEKALGEAIAEALRLGLVSSREQLFIT--SKLWCQNAHRDHVIPALKKSLSALQM 118 (327)
Q Consensus 43 ~~~~l~~A~~~Gi~~~DTA~~Yg--sE~~lG~~L~~~~~~g~~~~R~~v~I~--tK~~~~~~~~~~i~~~le~SL~rL~~ 118 (327)
..+.++.|.+.|++.|=.+++.. ...-+-..+++..+-. .+.++-|. .=+... ++. ....++.+++ .
T Consensus 16 ~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~---~~~~i~il~GiE~~~~---~~~-~~~~~~~~~~--~ 86 (215)
T PRK08392 16 VRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG---EESEIVVLAGIEANIT---PNG-VDITDDFAKK--L 86 (215)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh---hccCceEEEeEEeeec---CCc-chhHHHHHhh--C
Confidence 56789999999999997776653 1112222222211101 22233222 222111 111 2333444553 4
Q ss_pred CceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccc-------c-HHHHHHHHHhC---
Q 044053 119 EYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF-------S-CKKIETILTFA--- 187 (327)
Q Consensus 119 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~-------~-~~~l~~~~~~~--- 187 (327)
||+ +.-+|.... + ......++.+.++.+.|.+.-+|=-.. . ...++++++.+
T Consensus 87 D~v-I~SvH~~~~--~--------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~ 149 (215)
T PRK08392 87 DYV-IASVHEWFG--R--------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAY 149 (215)
T ss_pred CEE-EEEeecCcC--C--------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHh
Confidence 777 778884311 0 124677788888899998877764221 1 13444444432
Q ss_pred CCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHHHH
Q 044053 188 TIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQV 256 (327)
Q Consensus 188 ~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~ 256 (327)
+..+.+| -....+..++++.|++.|+.++.-| =+- .+..+-.-+...+++++.|.++.++
T Consensus 150 g~~lEiN---t~~~~p~~~~l~~~~~~G~~~~igS-DAH-----~~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 150 GKAFEIS---SRYRVPDLEFIRECIKRGIKLTFAS-DAH-----RPEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred CCEEEEe---CCCCCCCHHHHHHHHHcCCEEEEeC-CCC-----ChHHCCcHHHHHHHHHHcCCCHHHe
Confidence 3333333 1222345789999999998764422 221 0111111356677888888877664
No 26
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=84.25 E-value=34 Score=31.47 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHH--HHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYGTEKAL--GEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSAL 116 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~l--G~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL 116 (327)
+.++..+.++.+.+.|++.|+.--.-..+..+ =+++++. -. ++-|.-+... ..+.+.. ..+-+.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~-------~g-~~~l~vD~n~-~~~~~~A-~~~~~~l~~~ 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA-------AP-DARLRVDANQ-GWTPEEA-VELLRELAEL 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh-------CC-CCeEEEeCCC-CcCHHHH-HHHHHHHHhc
Confidence 55667788888899999999864211112221 1233332 22 5667777632 3333332 2333445555
Q ss_pred CCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeee
Q 044053 117 QMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQ 195 (327)
Q Consensus 117 ~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q 195 (327)
+++ ++-.|... +-++.+.++++...|. ..|=+-++...+.++++.... +++|
T Consensus 204 ~l~-----~iEeP~~~--------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~--d~v~ 256 (316)
T cd03319 204 GVE-----LIEQPVPA--------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAY--DGIN 256 (316)
T ss_pred CCC-----EEECCCCC--------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCC--CEEE
Confidence 443 34444221 1246677788887776 445566788899998886654 3666
Q ss_pred cccCcc---cccHHHHHHHHHcCCEEEEecCCC
Q 044053 196 VEMHPV---WQQRKLIEFCKAKGIIVTAYSPLG 225 (327)
Q Consensus 196 ~~~~~~---~~~~~ll~~~~~~gi~v~a~~pl~ 225 (327)
+..... ..-.++..+|+++|+.++..+-+.
T Consensus 257 ~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~ 289 (316)
T cd03319 257 IKLMKTGGLTEALRIADLARAAGLKVMVGCMVE 289 (316)
T ss_pred EeccccCCHHHHHHHHHHHHHcCCCEEEECchh
Confidence 665443 122678999999999999875553
No 27
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=82.96 E-value=40 Score=32.06 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=61.3
Q ss_pred ceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEec---cccHHHHHHHHHhCCC-CCeee
Q 044053 120 YLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLS---NFSCKKIETILTFATI-PPSIN 194 (327)
Q Consensus 120 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir-~iGvS---~~~~~~l~~~~~~~~~-~~~~~ 194 (327)
.+|++.||.-.....+ .+...++..+..++..+.=++- -|+=| ..+++.++.+++.+.- +|.++
T Consensus 153 ~aD~Ialr~~S~DP~~-----------~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~ 221 (389)
T TIGR00381 153 GADMVTIHLISTDPKL-----------DDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLA 221 (389)
T ss_pred CCCEEEEEecCCCccc-----------cccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEE
Confidence 4789999976442111 1233566677777764433332 33333 5679999999998864 56666
Q ss_pred ecccCcccccHHHHHHHHHcCCEEEEecCCCC
Q 044053 195 QVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 195 q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
-..... .-.++.+.|+++|..+++++|..-
T Consensus 222 SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di 251 (389)
T TIGR00381 222 SANLDL--DYEKIANAAKKYGHVVLSWTIMDI 251 (389)
T ss_pred ecCchh--hHHHHHHHHHHhCCeEEEEcCCcH
Confidence 444331 226799999999999999998864
No 28
>PLN02489 homocysteine S-methyltransferase
Probab=82.45 E-value=43 Score=31.32 Aligned_cols=168 Identities=10% Similarity=0.095 Sum_probs=97.4
Q ss_pred CcEEEEeccCCCC----------------CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCC
Q 044053 87 EQLFITSKLWCQN----------------AHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMD 150 (327)
Q Consensus 87 ~~v~I~tK~~~~~----------------~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~ 150 (327)
.+++|+--+++.. .+.+.+.......++.|--..+|++.+--. ..
T Consensus 131 ~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~-------------------~~ 191 (335)
T PLN02489 131 RPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETI-------------------PN 191 (335)
T ss_pred CCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc-------------------CC
Confidence 4678888875421 345777888777788775566999999854 23
Q ss_pred HHHHHHHHHHHHHcC--CccEEEecccc------HHHHHHHHHhC--CCCCeeeecccCcccccHHHHHHHHHc-CCEEE
Q 044053 151 YRGVWEAMEESQMLG--LTKSIGLSNFS------CKKIETILTFA--TIPPSINQVEMHPVWQQRKLIEFCKAK-GIIVT 219 (327)
Q Consensus 151 ~~~~~~~l~~l~~~G--kir~iGvS~~~------~~~l~~~~~~~--~~~~~~~q~~~~~~~~~~~ll~~~~~~-gi~v~ 219 (327)
..++..+++.+++.+ +--.|.++..+ ...++++++.. ...+..+-+++.....-..+++..+.. ++.++
T Consensus 192 l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~ 271 (335)
T PLN02489 192 KLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCTPPRFIHGLILSIRKVTSKPIV 271 (335)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHhhcCCcEE
Confidence 677777788887775 44445555321 11233333221 124567777775332225566555554 67777
Q ss_pred EecCCCCCCccCCCCc-ccChHHHHHHHHHcCCC---HHHHHHHHHHhcCCEEeecC--CCHHHHHHhhccc
Q 044053 220 AYSPLGAVGKIYGSNQ-VLENEALKEIAKAHGKT---VAQVSLRWIVEQGATVVVKS--LNLERMKQNLGIF 285 (327)
Q Consensus 220 a~~pl~~~G~l~~~~~-~~~~~~l~~ia~~~~~s---~aq~al~w~l~~~~~vi~g~--~~~~~l~enl~a~ 285 (327)
+|-- + |..+.... ... ..++.+ .++.+.+|. ..|+.+|=|+ ++|+|+++--+.+
T Consensus 272 vyPN-a--G~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~Ga~iIGGCCgt~P~hI~al~~~l 331 (335)
T PLN02489 272 VYPN-S--GETYDGEAKEWV--------ESTGVSDEDFVSYVNKWR-DAGASLIGGCCRTTPNTIRAISKAL 331 (335)
T ss_pred EECC-C--CCCCCCccCccc--------CCCCCCHHHHHHHHHHHH-HCCCcEEeeCCCCCHHHHHHHHHHH
Confidence 7743 2 33321100 000 012222 456778886 4578888776 7899998866544
No 29
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=80.23 E-value=40 Score=30.68 Aligned_cols=215 Identities=13% Similarity=0.126 Sum_probs=117.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcC------CHHHHHHHHHHHHh----------cCCCCCCCcEEEEeccCCC----
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYG------TEKALGEAIAEALR----------LGLVSSREQLFITSKLWCQ---- 98 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg------sE~~lG~~L~~~~~----------~g~~~~R~~v~I~tK~~~~---- 98 (327)
.++..+++-...+++|-+.++|+ .|. +|++-.+-++++.+ +-+ -.+...|+--+++.
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~-TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~--g~~~~~iagsiGP~ga~~ 117 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTA-TYQATPEGFAERVSEDEAKQLIRRSVELARAARDAY--GEENQNIAGSLGPYGAAL 117 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeeh-hhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--cccccccceeccchhhhc
Confidence 45666777777789999999887 564 23321111121111 111 12233355555432
Q ss_pred --------CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 044053 99 --------NAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSI 170 (327)
Q Consensus 99 --------~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~i 170 (327)
..+.+.+.+-...-++.|+-.-+|++.+-..... ...+.+.+.++++ +|=-+|
T Consensus 118 a~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i----------------~Ea~Aiv~l~~~~---s~p~wI 178 (300)
T COG2040 118 ADEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNI----------------TEAEAIVQLVQEF---SKPAWI 178 (300)
T ss_pred ChhhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCCh----------------HHHHHHHHHHHHh---CCceEE
Confidence 2334556666677788888778999988754221 1134444555555 888899
Q ss_pred Eecccc------HHHHHHHHHhCC-C-CCeeeecccCcccccHHHHHHH--HHcCCEEEEecCCCCCCccCCCCc-ccCh
Q 044053 171 GLSNFS------CKKIETILTFAT-I-PPSINQVEMHPVWQQRKLIEFC--KAKGIIVTAYSPLGAVGKIYGSNQ-VLEN 239 (327)
Q Consensus 171 GvS~~~------~~~l~~~~~~~~-~-~~~~~q~~~~~~~~~~~ll~~~--~~~gi~v~a~~pl~~~G~l~~~~~-~~~~ 239 (327)
+++-.+ ...+.++..... . .+...-+++..+.+-..+++.. ...|+++++|-- + |--+.... ....
T Consensus 179 SfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN--S-Ge~~d~~~k~w~~ 255 (300)
T COG2040 179 SFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN--S-GEQYDPAGKTWHG 255 (300)
T ss_pred EEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC--c-ccccCcCCCcCCC
Confidence 998763 222444444322 2 2445555665555556777777 445889999855 3 33222111 0000
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCEEeecC--CCHHHHHHhhccc
Q 044053 240 EALKEIAKAHGKTVAQVSLRWIVEQGATVVVKS--LNLERMKQNLGIF 285 (327)
Q Consensus 240 ~~l~~ia~~~~~s~aq~al~w~l~~~~~vi~g~--~~~~~l~enl~a~ 285 (327)
+. .. --+-.+++..|+-+ |..+|-|+ +++.|+.+--+++
T Consensus 256 p~--~~----~~~~~~~a~~w~~~-GA~iiGGCCrt~p~~I~ei~~~~ 296 (300)
T COG2040 256 PA--LS----ADSYSTLAKSWVEA-GARIIGGCCRTGPAHIAEIAKAL 296 (300)
T ss_pred CC--Cc----hhHHHHHHHHHHhc-ccceeeeccCCChHHHHHHHHHH
Confidence 00 00 01235667888744 56666665 6788888866554
No 30
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=79.38 E-value=24 Score=31.45 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=63.8
Q ss_pred HHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeeecccCccccc--HHHHHHHHHcCCEEEEecCCCCCCccCCCCc
Q 044053 159 EESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQ 235 (327)
Q Consensus 159 ~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~ 235 (327)
.+..++|+.- .+.+..-++..++. +...+++++++=.|.++++.+ ..++..|+..|..++++-|-..
T Consensus 4 k~~l~~g~~~~g~~~~~~~p~~~e~-~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~--------- 73 (249)
T TIGR02311 4 KQALKEGQPQIGLWLGLADPYAAEI-CAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD--------- 73 (249)
T ss_pred HHHHHCCCceEEEEEeCCCcHHHHH-HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC---------
Confidence 3445568752 23333334444444 455678888998898887554 4477777788888887755432
Q ss_pred ccChHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCCCHHHHHHhhccccc
Q 044053 236 VLENEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSLNLERMKQNLGIFDW 287 (327)
Q Consensus 236 ~~~~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~~~~~l~enl~a~~~ 287 (327)
+ .-++.++..| .+++|-..+++++++.+++..+
T Consensus 74 -----------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -----------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -----------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1356677777 4677788888888877776654
No 31
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=79.21 E-value=27 Score=34.26 Aligned_cols=129 Identities=19% Similarity=0.096 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCEEe--CCCCcC----------CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCC-hh--------
Q 044053 45 LAVLEAIKLGYRHFD--TAAMYG----------TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAH-RD-------- 103 (327)
Q Consensus 45 ~~l~~A~~~Gi~~~D--TA~~Yg----------sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~-~~-------- 103 (327)
+-+++.-+.|+..+= ||..|- .-+.+..+-++++... -+.++||++-++.-... |.
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~---L~Gk~~lTaGLGGMgGAQplA~~m~g~v 182 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD---LAGKLFLTAGLGGMGGAQPLAATMAGGV 182 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS----TT-EEEEE--STTCCHHHHHHHHTT-E
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC---CcceEEEEecccccccchHHHHHhcCce
Confidence 346777788988663 665552 3344555666665433 57889999988653210 00
Q ss_pred --hHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHH
Q 044053 104 --HVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIE 181 (327)
Q Consensus 104 --~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~ 181 (327)
-++-.-++.-+|+.+.|+|.+ ..+.+++++..++.+++|+..+||+-..-++.++
T Consensus 183 ~l~vEvd~~ri~kR~~~g~ld~~-----------------------~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~ 239 (546)
T PF01175_consen 183 GLIVEVDPSRIEKRLEQGYLDEV-----------------------TDDLDEALARAKEARAKKEPLSIGLLGNAADLWE 239 (546)
T ss_dssp EEEEES-HHHHHHHHHTTSSSEE-----------------------ESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHH
T ss_pred EEEEEECHHHHHHHHhCCCeeEE-----------------------cCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHH
Confidence 001112344578888999976 1248999999999999999999999998899999
Q ss_pred HHHHhCC-CCCeeeecccC
Q 044053 182 TILTFAT-IPPSINQVEMH 199 (327)
Q Consensus 182 ~~~~~~~-~~~~~~q~~~~ 199 (327)
++++..- .++..-|...|
T Consensus 240 ~l~~~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 240 ELVERGIIPDLVTDQTSAH 258 (546)
T ss_dssp HHHHTT---SEE---SSTT
T ss_pred HHHHcCCCCCcccCCCccc
Confidence 9988632 34445677765
No 32
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=78.60 E-value=57 Score=31.48 Aligned_cols=116 Identities=17% Similarity=0.146 Sum_probs=64.0
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC-CCceeEEEeecCCCCCCCCCCCC
Q 044053 62 AMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQ-MEYLDLYLVHLPISSKPGEVGFP 140 (327)
Q Consensus 62 ~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~-~d~iDl~~lH~p~~~~~~~~~~~ 140 (327)
-.||.|+.|-++|++..+.- +.+-++|.|-....-. -+.++.-+++.-++.. ...+.++.+|.|+.....
T Consensus 61 ~V~Gg~~~L~~~i~~~~~~~---~p~~I~v~~tC~~~li-GdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~----- 131 (428)
T cd01965 61 AVFGGEDNLIEALKNLLSRY---KPDVIGVLTTCLTETI-GDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSH----- 131 (428)
T ss_pred eeECcHHHHHHHHHHHHHhc---CCCEEEEECCcchhhc-CCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcH-----
Confidence 45778888888998765432 3445677776533211 2334444433333221 124667888887654210
Q ss_pred CCCCCCCCCCHHHHHHHHHH-H------HHcCCccEEEeccc---cHHHHHHHHHhCCCCCee
Q 044053 141 VPKEDLLPMDYRGVWEAMEE-S------QMLGLTKSIGLSNF---SCKKIETILTFATIPPSI 193 (327)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~-l------~~~Gkir~iGvS~~---~~~~l~~~~~~~~~~~~~ 193 (327)
....+.++++|-+ + ++.++|.-||-++. +.+++.++++..++++..
T Consensus 132 -------~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 132 -------ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred -------HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 0113334444432 2 23466888876664 367888999888766433
No 33
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=78.58 E-value=47 Score=31.56 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcC-------CHHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYG-------TEKALGEAIAEALRLGLVSSREQLFITSKL 95 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-------sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~ 95 (327)
...++.+++..|++.| ....|+ +-+.+.+.|.+.+...+ ..++|||++-.
T Consensus 79 ts~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl--~a~DV~ltsGC 135 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKL--TADDVVLTSGC 135 (447)
T ss_pred CCHHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCcc--CcCceEEeccc
Confidence 4567788889999988 245676 45566666654333333 68899998764
No 34
>PRK08609 hypothetical protein; Provisional
Probab=77.67 E-value=84 Score=31.77 Aligned_cols=182 Identities=12% Similarity=0.097 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCCEEeCCCCcC--------CHHHHHHHH---HHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 044053 43 LKLAVLEAIKLGYRHFDTAAMYG--------TEKALGEAI---AEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKK 111 (327)
Q Consensus 43 ~~~~l~~A~~~Gi~~~DTA~~Yg--------sE~~lG~~L---~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~ 111 (327)
..++++.|.+.|+++|=.++|+. +...+-..+ ++. .... ..=+|++..=+. ..++....-.+.
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l-~~~~--~~i~Il~GiEv~---i~~~g~~d~~~~ 424 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKAL-NEKY--PEIDILSGIEMD---ILPDGSLDYDDE 424 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHH-HHhc--CCCeEEEEEEEe---ecCCcchhhcHH
Confidence 56689999999999998888752 222222222 211 1110 111233222221 111222233334
Q ss_pred HHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecc------cc--HHHHHHH
Q 044053 112 SLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSN------FS--CKKIETI 183 (327)
Q Consensus 112 SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~------~~--~~~l~~~ 183 (327)
.|+. .||+ +.-+|++.. .+.+++++.+.++.+.|.+.-||=-. .. ...++++
T Consensus 425 ~L~~--~D~v-I~SvH~~~~-----------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i 484 (570)
T PRK08609 425 VLAE--LDYV-IAAIHSSFS-----------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQL 484 (570)
T ss_pred HHHh--hCEE-EEEeecCCC-----------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHH
Confidence 5554 5777 788897521 12567788899999899888777443 11 2334444
Q ss_pred HHhCCCCCeeeecccCcccc--cHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHHHH
Q 044053 184 LTFATIPPSINQVEMHPVWQ--QRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQV 256 (327)
Q Consensus 184 ~~~~~~~~~~~q~~~~~~~~--~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~ 256 (327)
++.+.-.-.++|++-+++.. ...++..|.+.|+.++. ++=+. .+..+-..+.-..+|++-+.++.++
T Consensus 485 ~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~i-gSDAH-----~~~~l~~~~~~v~~ar~~~~~~~~v 553 (570)
T PRK08609 485 IELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAI-NTDAH-----HTEMLDDMKYGVATARKGWIQKDRV 553 (570)
T ss_pred HHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEE-ECCCC-----ChhhhCcHHHHHHHHHHcCCCHHHc
Confidence 44321112366666665532 37789999999997543 22222 1122223455667777777766653
No 35
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=75.78 E-value=37 Score=32.41 Aligned_cols=141 Identities=17% Similarity=0.204 Sum_probs=70.4
Q ss_pred CChHHHHHHHHHHHHcCCCEE-eCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEec---------c-CCCCCChhhHH
Q 044053 38 SDTDALKLAVLEAIKLGYRHF-DTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSK---------L-WCQNAHRDHVI 106 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~-DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK---------~-~~~~~~~~~i~ 106 (327)
.+.+.-.+-++.|.+.|-..+ |-+. -|.-..+-+.+-+ +..+=|.|= - ...+.+.+.+.
T Consensus 73 ~d~~~E~~K~~~A~~~GADtvMDLSt-ggdl~~iR~~il~---------~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~ 142 (420)
T PF01964_consen 73 SDIEEELEKLKIAEKAGADTVMDLST-GGDLDEIRRAILE---------NSPVPVGTVPIYQAAIRKGGSIVDMTEDDFF 142 (420)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEE----STTHHHHHHHHHH---------T-SS-EEE-HHHHHHHHTTT-GGG--HHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCC-CCCHHHHHHHHHH---------hCCCccccchHHHHHHHhCCChhhCCHHHHH
Confidence 344444566789999997654 5442 2333333444332 223334332 1 12356788888
Q ss_pred HHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHh
Q 044053 107 PALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTF 186 (327)
Q Consensus 107 ~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~ 186 (327)
+.+|+..+ +-+|.+-+|.-- ..+.++.++++|++- |+-+-...-+...+..
T Consensus 143 ~~ie~qa~----~GVDfmtiH~gi-----------------------t~~~~~~~~~~~R~~--giVSRGGs~l~~WM~~ 193 (420)
T PF01964_consen 143 DVIEKQAK----DGVDFMTIHCGI-----------------------TRETLERLKKSGRIM--GIVSRGGSILAAWMLH 193 (420)
T ss_dssp HHHHHHHH----HT--EEEE-TT-------------------------GGGGGGGT--TSSS------HHHHHHHHHHHH
T ss_pred HHHHHHHH----cCCCEEEEccch-----------------------hHHHHHHHhhhcccc--CccccchHHHHHHHHh
Confidence 88888877 458999999752 236677888888765 4455554555444432
Q ss_pred CCCCCeeeecccCccccc-HHHHHHHHHcCCEEEEecCCC
Q 044053 187 ATIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLG 225 (327)
Q Consensus 187 ~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~ 225 (327)
.+ .=||++.. .++++.|+++++.+.----|.
T Consensus 194 n~--------~ENPly~~fD~lLeI~k~yDVtLSLGDglR 225 (420)
T PF01964_consen 194 NG--------KENPLYEHFDRLLEIAKEYDVTLSLGDGLR 225 (420)
T ss_dssp HT--------S--HHHHTHHHHHHHHTTTT-EEEE--TT-
T ss_pred cC--------CcCcHHHhHHHHHHHHHHhCeeEecccccC
Confidence 21 34566665 789999999999986544443
No 36
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=75.26 E-value=86 Score=30.68 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=62.6
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCC-CCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCC----ceeEEEeecCCCCCC
Q 044053 60 TAAMYGTEKALGEAIAEALRLGLVSS-REQLFITSKLWCQNAHRDHVIPALKKSLSALQME----YLDLYLVHLPISSKP 134 (327)
Q Consensus 60 TA~~YgsE~~lG~~L~~~~~~g~~~~-R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d----~iDl~~lH~p~~~~~ 134 (327)
..-.||.|+.|-++|++..+.. + .+=++|.|-....-. -+.+..-+++.-++++-+ .+.++.+|.|+..-.
T Consensus 64 ~d~VfGG~~~L~~~I~~~~~~~---~~p~~I~V~tTC~~eiI-GDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs 139 (454)
T cd01973 64 DSAVFGGAKRVEEGVLVLARRY---PDLRVIPIITTCSTEII-GDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS 139 (454)
T ss_pred CceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHhhh-ccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC
Confidence 3456888888888888764321 2 234677777643211 134444444433333211 478899998876421
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHH-HHHH----cCCccEEEecc--ccHHHHHHHHHhCCCCCe
Q 044053 135 GEVGFPVPKEDLLPMDYRGVWEAME-ESQM----LGLTKSIGLSN--FSCKKIETILTFATIPPS 192 (327)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~----~Gkir~iGvS~--~~~~~l~~~~~~~~~~~~ 192 (327)
. ....+.+++++- .+.. +++|.-||-.+ -+.+++.++++..++++.
T Consensus 140 --~----------~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~ 192 (454)
T cd01973 140 --M----------VTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEAN 192 (454)
T ss_pred --H----------HHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 0 011233333332 2222 46688887443 235778888887776543
No 37
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=75.14 E-value=67 Score=31.95 Aligned_cols=109 Identities=7% Similarity=0.040 Sum_probs=62.1
Q ss_pred CcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCC
Q 044053 63 MYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVP 142 (327)
Q Consensus 63 ~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~ 142 (327)
.+|+++.|-++|++..+.. +.+-++|+|-. .++-+-..++...++++.+.++++.++.|......
T Consensus 66 v~G~~~~L~~aI~~~~~~~---~P~~I~V~sTC-----~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~------- 130 (511)
T TIGR01278 66 ARGSQTRLVDTVRRVDDRF---KPDLIVVTPSC-----TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKE------- 130 (511)
T ss_pred ecchHHHHHHHHHHHHHhc---CCCEEEEeCCC-----hHHHhccCHHHHHHHhccCCCcEEEecCCCcccch-------
Confidence 3678888888888764332 33345666654 22334344444455555556889999988653210
Q ss_pred CCCCCCCCHHHHHHHHHH-H----------HHcCCccEEEeccc------cHHHHHHHHHhCCCCC
Q 044053 143 KEDLLPMDYRGVWEAMEE-S----------QMLGLTKSIGLSNF------SCKKIETILTFATIPP 191 (327)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~-l----------~~~Gkir~iGvS~~------~~~~l~~~~~~~~~~~ 191 (327)
....+.+++++-+ + .+.++|.-||.++. +...+.++++..++.+
T Consensus 131 -----~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 131 -----NQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred -----hHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 0112223332221 1 13456888998863 4567888888777654
No 38
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=74.78 E-value=35 Score=31.66 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=70.2
Q ss_pred HHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccE-EEeccc---cHHHHHHHHHh
Q 044053 111 KSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKS-IGLSNF---SCKKIETILTF 186 (327)
Q Consensus 111 ~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~-iGvS~~---~~~~l~~~~~~ 186 (327)
+.-+.+|.|+||+-+.-. ++... +...++..+.++...+.=.+-- |..|.. +++.++.+++.
T Consensus 83 ~q~~~~GAd~Idl~~~s~-dp~~~-------------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~ 148 (319)
T PRK04452 83 KCVEEYGADMITLHLIST-DPNGK-------------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEA 148 (319)
T ss_pred HHHHHhCCCEEEEECCCC-Ccccc-------------cchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 444578988888764322 11100 1123444444444433333333 666633 68999999998
Q ss_pred CC-CCCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHHHH
Q 044053 187 AT-IPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQV 256 (327)
Q Consensus 187 ~~-~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~ 256 (327)
+. -++.++-+... +-+.+.+.|+++|..|++.+|..- -....+...+.++|+++..+
T Consensus 149 ~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~Dl----------n~ak~L~~~l~~~Gi~~edI 206 (319)
T PRK04452 149 AEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPLDI----------NLAKQLNILLTELGVPRERI 206 (319)
T ss_pred hCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHHHH----------HHHHHHHHHHHHcCCCHHHE
Confidence 76 34666644422 126799999999999999886632 11345556666677655553
No 39
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=74.67 E-value=18 Score=34.53 Aligned_cols=80 Identities=16% Similarity=0.048 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCC-CCCChhhHHHHHHHHHHHhCCC
Q 044053 41 DALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWC-QNAHRDHVIPALKKSLSALQME 119 (327)
Q Consensus 41 ~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~-~~~~~~~i~~~le~SL~rL~~d 119 (327)
-....++++|++.|++++||+..+.....+....+ +..+.+..-++- +..+--.+...+++--+ .++
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~----------~Agit~v~~~G~dPGi~nv~a~~a~~~~~~--~i~ 146 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK----------KAGITAVLGCGFDPGITNVLAAYAAKELFD--EIE 146 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH----------HcCeEEEcccCcCcchHHHHHHHHHHHhhc--ccc
Confidence 34457899999999999999977655322322222 233444444432 22221222222222222 589
Q ss_pred ceeEEEeecCCCC
Q 044053 120 YLDLYLVHLPISS 132 (327)
Q Consensus 120 ~iDl~~lH~p~~~ 132 (327)
+||+|..+.|.+.
T Consensus 147 si~iy~g~~g~~~ 159 (389)
T COG1748 147 SIDIYVGGLGEHG 159 (389)
T ss_pred EEEEEEecCCCCC
Confidence 9999999998765
No 40
>PRK05414 urocanate hydratase; Provisional
Probab=73.59 E-value=13 Score=36.34 Aligned_cols=128 Identities=21% Similarity=0.173 Sum_probs=84.8
Q ss_pred HHHHHHHcCCCEEe--CCCCc----------CCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCC-hhh--------
Q 044053 46 AVLEAIKLGYRHFD--TAAMY----------GTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAH-RDH-------- 104 (327)
Q Consensus 46 ~l~~A~~~Gi~~~D--TA~~Y----------gsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~-~~~-------- 104 (327)
-+++.-+.|+..+= ||..| |.-+.+..+-++.+. |- -+.++||++-++.-... |..
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~--L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GD--LAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CC--CceeEEEEecCCccccccHHHHHhcCceE
Confidence 35667778887653 55544 234445556666553 32 47789999988543210 100
Q ss_pred --HHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHH
Q 044053 105 --VIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIET 182 (327)
Q Consensus 105 --i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~ 182 (327)
++-.-.+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.+++
T Consensus 194 i~vEvd~~ri~kR~~~gyld~~-----------------------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~ 250 (556)
T PRK05414 194 LAVEVDESRIDKRLRTGYLDEK-----------------------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPE 250 (556)
T ss_pred EEEEECHHHHHHHHhCCcceeE-----------------------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHH
Confidence 01112344578899999966 23489999999999999999999999988999999
Q ss_pred HHHhCC-CCCeeeecccC
Q 044053 183 ILTFAT-IPPSINQVEMH 199 (327)
Q Consensus 183 ~~~~~~-~~~~~~q~~~~ 199 (327)
+++..- .++..-|...|
T Consensus 251 l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 251 LVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred HHHcCCCCCccCcCcccc
Confidence 988642 34445677764
No 41
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=73.17 E-value=14 Score=36.12 Aligned_cols=128 Identities=17% Similarity=0.132 Sum_probs=84.8
Q ss_pred HHHHHHHcCCCEEe--CCCCc----------CCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCC-hhh--------
Q 044053 46 AVLEAIKLGYRHFD--TAAMY----------GTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAH-RDH-------- 104 (327)
Q Consensus 46 ~l~~A~~~Gi~~~D--TA~~Y----------gsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~-~~~-------- 104 (327)
-++..-+.|+..+- ||..| |.-+.+..+-++.+... -+.++||++-++.-... |..
T Consensus 108 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~---L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 184 (545)
T TIGR01228 108 HFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGS---LKGKWVLTAGLGGMGGAQPLAVTMNGGVS 184 (545)
T ss_pred HHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCC---CceeEEEEeCCCccccccHHHHHHcCceE
Confidence 45667778887653 55444 23444555666655322 47789999888542210 100
Q ss_pred H--HHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHH
Q 044053 105 V--IPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIET 182 (327)
Q Consensus 105 i--~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~ 182 (327)
+ +-.-.+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.+++
T Consensus 185 i~vEvd~~ri~kR~~~gyld~~-----------------------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~ 241 (545)
T TIGR01228 185 IAVEVDESRIDKRLETKYCDEQ-----------------------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPE 241 (545)
T ss_pred EEEEECHHHHHHHHhcCcceeE-----------------------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHH
Confidence 0 1112344578899999965 23489999999999999999999999998999999
Q ss_pred HHHhC-CCCCeeeecccC
Q 044053 183 ILTFA-TIPPSINQVEMH 199 (327)
Q Consensus 183 ~~~~~-~~~~~~~q~~~~ 199 (327)
+++.. ..++..-|...|
T Consensus 242 l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 242 LLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred HHHcCCCCCCcCCCCccc
Confidence 98853 234455677764
No 42
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=72.33 E-value=67 Score=31.76 Aligned_cols=127 Identities=10% Similarity=0.103 Sum_probs=76.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccEEEecc----ccHHHHHHHHHh----CCCCCe-eeecccCcccccHHHHHHHHHcCC
Q 044053 146 LLPMDYRGVWEAMEESQMLGLTKSIGLSN----FSCKKIETILTF----ATIPPS-INQVEMHPVWQQRKLIEFCKAKGI 216 (327)
Q Consensus 146 ~~~~~~~~~~~~l~~l~~~Gkir~iGvS~----~~~~~l~~~~~~----~~~~~~-~~q~~~~~~~~~~~ll~~~~~~gi 216 (327)
+...+.+.+++.++.++++..++.+-+.. .+...+.++++. ...++. ..+...+....+.++++..++.|+
T Consensus 219 ~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~ 298 (497)
T TIGR02026 219 YRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGL 298 (497)
T ss_pred eecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCC
Confidence 33456889999999998876688876653 234444444332 112221 134444444456889999999998
Q ss_pred EEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHHHHHHHHHHhcC----CEEeecC--CCHHHHHHhhc
Q 044053 217 IVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQVSLRWIVEQG----ATVVVKS--LNLERMKQNLG 283 (327)
Q Consensus 217 ~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~al~w~l~~~----~~vi~g~--~~~~~l~enl~ 283 (327)
.-+..+.=.. ..+.++.+-+.+...-..-+++.+.+.| ...|+|. .+.+.+++.++
T Consensus 299 ~~v~iGiES~-----------~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~ 360 (497)
T TIGR02026 299 VHISLGTEAA-----------AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYR 360 (497)
T ss_pred cEEEEccccC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHH
Confidence 7766533321 2345555544443333445677777777 3457774 57788887765
No 43
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=70.75 E-value=2.6 Score=39.44 Aligned_cols=53 Identities=13% Similarity=0.304 Sum_probs=35.4
Q ss_pred cCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccc--ccHHHHHHHHHcCCE
Q 044053 164 LGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVW--QQRKLIEFCKAKGII 217 (327)
Q Consensus 164 ~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~ll~~~~~~gi~ 217 (327)
-|+||++||--++++.+.++..... .-.+.+.+..++. .+..+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~-e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN-EKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc-HHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999988876543 1123222222222 236777888887775
No 44
>PRK13796 GTPase YqeH; Provisional
Probab=69.24 E-value=1e+02 Score=29.14 Aligned_cols=121 Identities=13% Similarity=0.097 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHHHcC---CCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCC--CCCChhhHHHHHHHH
Q 044053 38 SDTDALKLAVLEAIKLG---YRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWC--QNAHRDHVIPALKKS 112 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~G---i~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~--~~~~~~~i~~~le~S 112 (327)
.+.++..++++..-+.- +-.+|..+.-++- -..|++.. + .+.-++|.+|.-. .....+.+.+.+..-
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~---~~~L~~~~--~---~kpviLViNK~DLl~~~~~~~~i~~~l~~~ 125 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW---IPGLHRFV--G---NNPVLLVGNKADLLPKSVKKNKVKNWLRQE 125 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCch---hHHHHHHh--C---CCCEEEEEEchhhCCCccCHHHHHHHHHHH
Confidence 34556666776666544 4567876655531 11233221 2 4567889999732 222344566666666
Q ss_pred HHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHH
Q 044053 113 LSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETI 183 (327)
Q Consensus 113 L~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~ 183 (327)
.+.+|....|++.+-.-. ....+++++.+.+..+.+.+-.+|.+|..-..+-..
T Consensus 126 ~k~~g~~~~~v~~vSAk~-----------------g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 126 AKELGLRPVDVVLISAQK-----------------GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred HHhcCCCcCcEEEEECCC-----------------CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 677776545766665332 123788888888887778899999999996655433
No 45
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=69.05 E-value=80 Score=28.38 Aligned_cols=102 Identities=18% Similarity=0.085 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHH
Q 044053 101 HRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKI 180 (327)
Q Consensus 101 ~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l 180 (327)
+.+.+.+...+.. .-|-|+||+=.= +. + ....+.+...++.+++.-.+ -|.+-+++++.+
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~---~-------------~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~ 82 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TA---V-------------EEEPETMEWLVETVQEVVDV-PLCIDSPNPAAI 82 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CC---c-------------hhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHH
Confidence 3455555555443 568899997532 10 0 01144555666666654333 378889999999
Q ss_pred HHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecC
Q 044053 181 ETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 181 ~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 223 (327)
+.+++.+.-.+.+|-+.... .+..++++.++++|..+++..-
T Consensus 83 eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 83 EAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 99999854455677544322 2246899999999999998643
No 46
>PLN02444 HMP-P synthase
Probab=67.93 E-value=1.4e+02 Score=29.99 Aligned_cols=139 Identities=10% Similarity=0.102 Sum_probs=81.2
Q ss_pred eccccCCChHHHHHHHHHHHHcCCCEE-eCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEec--------c--CCCCC
Q 044053 32 GCAVDKSDTDALKLAVLEAIKLGYRHF-DTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSK--------L--WCQNA 100 (327)
Q Consensus 32 G~~~~~~~~~~~~~~l~~A~~~Gi~~~-DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK--------~--~~~~~ 100 (327)
|+.....+.++-.+-++.|.+.|-..+ |-+ ..|.-..+-+++-+ ...+-|-|= + ...+.
T Consensus 228 GtS~~~s~ie~EveK~~~A~~~GADTvMDLS-TGgdi~~iR~~Il~---------~spvPVGTVPIYqA~~~~~~~~~~l 297 (642)
T PLN02444 228 GNSAVTSSIEEEVYKLQWATMWGADTVMDLS-TGRHIHETREWILR---------NSPVPVGTVPIYQALEKVDGIAENL 297 (642)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHH---------cCCCCccCccHHHHHHHhcCChhhC
Confidence 344332455555566789999997644 443 23343334444332 111222221 1 12356
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHH
Q 044053 101 HRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKI 180 (327)
Q Consensus 101 ~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l 180 (327)
+.+.+...+++..+ +-+|.+-+|.-. ..+.++.++ + |-.|+-+-...-+
T Consensus 298 t~d~~~d~ieeQae----qGVDfmTIH~Gv-----------------------~~~~v~~~~--~--R~tgIVSRGGSi~ 346 (642)
T PLN02444 298 TWEVFRETLIEQAE----QGVDYFTIHAGV-----------------------LLRYIPLTA--K--RMTGIVSRGGSIH 346 (642)
T ss_pred CHHHHHHHHHHHHH----hCCCEEEEChhh-----------------------HHHHHHHHh--C--cccCceeCCcHHH
Confidence 77778877777766 568888999641 334555554 3 6777777766666
Q ss_pred HHHHHhCCCCCeeeecccCccccc-HHHHHHHHHcCCEEE
Q 044053 181 ETILTFATIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVT 219 (327)
Q Consensus 181 ~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~ 219 (327)
..++.... .=||++.+ .++++.|++++|.+-
T Consensus 347 a~Wml~~~--------kENPlYe~FD~ileI~k~YDVtlS 378 (642)
T PLN02444 347 AKWCLAYH--------KENFAYEHWDDILDICNQYDIALS 378 (642)
T ss_pred HHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeee
Confidence 55554322 34566655 789999999999984
No 47
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=67.25 E-value=48 Score=29.34 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=63.0
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CccEEEeccccHH
Q 044053 100 AHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLG-LTKSIGLSNFSCK 178 (327)
Q Consensus 100 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-kir~iGvS~~~~~ 178 (327)
++.+...+-+ +.|..+|+++|.+-..-.+... | ...+.++.++++++.+ .++...++.....
T Consensus 16 ~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~-p---------------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~ 78 (265)
T cd03174 16 FSTEDKLEIA-EALDEAGVDSIEVGSGASPKAV-P---------------QMEDDWEVLRAIRKLVPNVKLQALVRNREK 78 (265)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEEeccCcCcccc-c---------------cCCCHHHHHHHHHhccCCcEEEEEccCchh
Confidence 3444444444 4477899999998765433111 1 1245678888888888 6777677766566
Q ss_pred HHHHHHHhCCCCCeeeecccCcc----------------cccHHHHHHHHHcCCEEEEec
Q 044053 179 KIETILTFATIPPSINQVEMHPV----------------WQQRKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 179 ~l~~~~~~~~~~~~~~q~~~~~~----------------~~~~~ll~~~~~~gi~v~a~~ 222 (327)
.++.+.+.. + ..+++.+..- ..-.+.+++++++|+.+...-
T Consensus 79 ~i~~a~~~g-~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 79 GIERALEAG-V--DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hHHHHHhCC-c--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 677666643 3 3444444332 111467888999999876654
No 48
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=66.00 E-value=1.2e+02 Score=28.39 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCC--CCcC-------CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHH
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTA--AMYG-------TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPAL 109 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA--~~Yg-------sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~l 109 (327)
+.++..+.++.+.+.|++.|-.- ..|. ..+.| +++++. -.+++.|..... ...+.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~-------~g~~~~l~vDaN-~~~~~~~a~--- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREA-------VGPDVDLMVDAN-GRWDLAEAI--- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHh-------hCCCCEEEEECC-CCCCHHHHH---
Confidence 45667777888889999988643 2231 11112 344432 234555666653 223333332
Q ss_pred HHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCC
Q 044053 110 KKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSCKKIETILTFAT 188 (327)
Q Consensus 110 e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~ 188 (327)
+-+++|. ..++.+++.|.+. +-++.+.++++.-.+. ..|=|.+++..+.++++...
T Consensus 207 -~~~~~l~--~~~i~~iEqP~~~--------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~ 263 (357)
T cd03316 207 -RLARALE--EYDLFWFEEPVPP--------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGA 263 (357)
T ss_pred -HHHHHhC--ccCCCeEcCCCCc--------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCC
Confidence 2233332 2345556655321 1346677787776565 44556678899999988654
Q ss_pred CCCeeeecccCcc---cccHHHHHHHHHcCCEEEEec
Q 044053 189 IPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 189 ~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~~ 222 (327)
. +++|+...-. .+-.++...|+++|+.++..+
T Consensus 264 ~--d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 264 V--DIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred C--CEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 3 4676665443 233789999999999987654
No 49
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=65.79 E-value=99 Score=27.53 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHH--HHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYGTEKAL--GEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSAL 116 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~l--G~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL 116 (327)
+.++..+.++.+.+.|++.|-.--.-..++.+ =+++++. -.+++.|.-... ...+.+...+-+ +.|+.+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~-------~g~~~~l~vDan-~~~~~~~a~~~~-~~l~~~ 155 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA-------VGDDAELRVDAN-RGWTPKQAIRAL-RALEDL 155 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCC-CCcCHHHHHHHH-HHHHhc
Confidence 34566677788888999888653211122222 1234432 223455555542 223333333222 333444
Q ss_pred CCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeee
Q 044053 117 QMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQ 195 (327)
Q Consensus 117 ~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q 195 (327)
+ +.++..|.+. +-++.+.++++.-.+. ..|=+-++...+.++++.... +++|
T Consensus 156 ~-----i~~iEeP~~~--------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~--d~v~ 208 (265)
T cd03315 156 G-----LDYVEQPLPA--------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAA--DAVN 208 (265)
T ss_pred C-----CCEEECCCCc--------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCC--CEEE
Confidence 4 4444555321 1246667777776555 445566778888888876543 4666
Q ss_pred cccCccc---ccHHHHHHHHHcCCEEEEecCCCC
Q 044053 196 VEMHPVW---QQRKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 196 ~~~~~~~---~~~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
+.....- .-.++...|+++|+.++..+.+.+
T Consensus 209 ~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s 242 (265)
T cd03315 209 IKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIES 242 (265)
T ss_pred EecccccCHHHHHHHHHHHHHcCCcEEecCccch
Confidence 6654432 226789999999999988765543
No 50
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=64.98 E-value=97 Score=27.16 Aligned_cols=171 Identities=8% Similarity=0.037 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCC
Q 044053 40 TDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQME 119 (327)
Q Consensus 40 ~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d 119 (327)
.....+++..|.+.|+..|=.+++...........+.. .+=+|+...-+. ...++.+... +++. ..
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~-------~~i~Il~GiEi~--~~~~~~~~~~----~~~~-~~ 80 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL-------LGFEIFRGVEIV--ASNPSKLRGL----VGKF-RK 80 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh-------cCCcEEeeEEEe--cCCHHHHHHH----HHhc-cC
Confidence 34578899999999999887766643110000111111 111122222221 1223333333 3332 13
Q ss_pred ceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccc---c---HHHHHHHHHhCCCCCee
Q 044053 120 YLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF---S---CKKIETILTFATIPPSI 193 (327)
Q Consensus 120 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~---~---~~~l~~~~~~~~~~~~~ 193 (327)
.+|++.+| |. .+ +....+.+.+.|.-||--.. . ...+.++....+ ++
T Consensus 81 ~~d~v~v~-~~--------------------~~---~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g---v~ 133 (237)
T PRK00912 81 KVDVLAVH-GG--------------------DE---KVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN---VA 133 (237)
T ss_pred cccEEEEe-CC--------------------CH---HHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC---eE
Confidence 57888888 21 11 22245788888888886532 1 112222222222 24
Q ss_pred eecccCcccc------------cHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHHHHH
Q 044053 194 NQVEMHPVWQ------------QRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQVS 257 (327)
Q Consensus 194 ~q~~~~~~~~------------~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~a 257 (327)
+.++++++.. ...++..|++.|+.++.-|=-.. +..+-.......+++..|.+..++-
T Consensus 134 lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~------~~~l~~~~~~~~l~~~~Gl~~~~~~ 203 (237)
T PRK00912 134 IEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS------CYDLRSPREMIALAELFGMEEDEAL 203 (237)
T ss_pred EEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc------ccccCCHHHHHHHHHHcCCCHHHHH
Confidence 5555554321 14689999999988865332211 1122234667778888887665543
No 51
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=64.44 E-value=57 Score=29.70 Aligned_cols=115 Identities=14% Similarity=0.210 Sum_probs=73.3
Q ss_pred HHHHHHHcCCccEEEeccccHHHHHHHHHhCC--C----CCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCcc
Q 044053 157 AMEESQMLGLTKSIGLSNFSCKKIETILTFAT--I----PPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKI 230 (327)
Q Consensus 157 ~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~--~----~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l 230 (327)
.++.|....++-.+-=++.+.+.+.++.+... + -+..+-+=+--..|+..+.+++++-++-++.-+.=
T Consensus 146 d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~n------ 219 (280)
T TIGR00216 146 DLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKN------ 219 (280)
T ss_pred HHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCC------
Confidence 34444444555555556677666666554322 1 11122222222345577899999988888763222
Q ss_pred CCCCcccChHHHHHHHHHcCC------CHHHHHHHHHHhcC-CEEeecCCCHHHHHHhh
Q 044053 231 YGSNQVLENEALKEIAKAHGK------TVAQVSLRWIVEQG-ATVVVKSLNLERMKQNL 282 (327)
Q Consensus 231 ~~~~~~~~~~~l~~ia~~~~~------s~aq~al~w~l~~~-~~vi~g~~~~~~l~enl 282 (327)
.....+|.++|++++. +..++-..|..... +.+..|+|+|+.+-+.+
T Consensus 220 -----SsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 220 -----SSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred -----CchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 2235789999999873 78899999997766 78889999998776543
No 52
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=64.10 E-value=78 Score=30.59 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=41.2
Q ss_pred CCChhhHHHHHHHHHHHhCCCceeEEEeec-CCCCCCCCCCCCCCCCCCCC-CCHHHHHHH-HHHHHHcCCccEEEeccc
Q 044053 99 NAHRDHVIPALKKSLSALQMEYLDLYLVHL-PISSKPGEVGFPVPKEDLLP-MDYRGVWEA-MEESQMLGLTKSIGLSNF 175 (327)
Q Consensus 99 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-l~~l~~~Gkir~iGvS~~ 175 (327)
..+.+.+.+.++..++ |+.|+|.+|.+-. |....... ....+.+.+ ....+.++. .+.|.+.|- +.+|+|||
T Consensus 200 ~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~---~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnf 274 (416)
T COG0635 200 GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQR---KIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNF 274 (416)
T ss_pred CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhh---cccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechh
Confidence 4456777777777665 7899999997653 32211000 000000000 012344554 445667777 99999999
Q ss_pred cH
Q 044053 176 SC 177 (327)
Q Consensus 176 ~~ 177 (327)
.-
T Consensus 275 a~ 276 (416)
T COG0635 275 AK 276 (416)
T ss_pred cC
Confidence 85
No 53
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=62.92 E-value=1.7e+02 Score=29.20 Aligned_cols=142 Identities=9% Similarity=0.070 Sum_probs=72.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCC
Q 044053 64 YGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPK 143 (327)
Q Consensus 64 YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~ 143 (327)
+|+++.|-++|++..... +.+-++|.|-.- ++-+-..++...++++. .++++.++.|......
T Consensus 67 ~G~~ekL~~aI~~~~~~~---~P~~I~V~sTC~-----seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~-------- 129 (519)
T PRK02910 67 RGTAELLKDTLRRADERF---QPDLIVVGPSCT-----AELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKE-------- 129 (519)
T ss_pred CChHHHHHHHHHHHHHhc---CCCEEEEeCCcH-----HHHhccCHHHHHHHhCC-CCCEEEEecCCccccc--------
Confidence 457767777887654321 233456666642 23333334444444554 3679999988654210
Q ss_pred CCCCCCCHHHHHHHHH-HHH-----------HcCCccEEEeccc------cHHHHHHHHHhCCCCCeeee----------
Q 044053 144 EDLLPMDYRGVWEAME-ESQ-----------MLGLTKSIGLSNF------SCKKIETILTFATIPPSINQ---------- 195 (327)
Q Consensus 144 ~~~~~~~~~~~~~~l~-~l~-----------~~Gkir~iGvS~~------~~~~l~~~~~~~~~~~~~~q---------- 195 (327)
....+.++.++- .+. +.++|.=||.++. +..++.++++..++.+.++-
T Consensus 130 ----~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~ 205 (519)
T PRK02910 130 ----NWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLK 205 (519)
T ss_pred ----chHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH
Confidence 011233333222 121 2356888888652 35678888887776543321
Q ss_pred ----cccCccc-cc--HHHHHHH-HHcCCEEEEecCCCC
Q 044053 196 ----VEMHPVW-QQ--RKLIEFC-KAKGIIVTAYSPLGA 226 (327)
Q Consensus 196 ----~~~~~~~-~~--~~ll~~~-~~~gi~v~a~~pl~~ 226 (327)
..+|+.. ++ ..+-++. ++.|+.++...|+|-
T Consensus 206 ~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~ 244 (519)
T PRK02910 206 RLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIGV 244 (519)
T ss_pred hcccCcEEEEeCHHHHHHHHHHHHHHhCCcccccccccH
Confidence 1122221 11 1233333 355899887778753
No 54
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=62.17 E-value=1.1e+02 Score=27.41 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=60.2
Q ss_pred CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecccc--
Q 044053 99 NAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS-- 176 (327)
Q Consensus 99 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~-- 176 (327)
.++.+ -+..+-+.|.++|+|+|++-+......... ........+.++.+..+.+ +..+..+++...
T Consensus 16 ~f~~~-~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~----------~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~ 83 (266)
T cd07944 16 DFGDE-FVKAIYRALAAAGIDYVEIGYRSSPEKEFK----------GKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGND 83 (266)
T ss_pred cCCHH-HHHHHHHHHHHCCCCEEEeecCCCCccccC----------CCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCC
Confidence 34444 445556669999999999876554321100 0001123455666555543 346666666544
Q ss_pred -HHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEe
Q 044053 177 -CKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 177 -~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~ 221 (327)
...++.+.+ +.++..-+.+..+.+..-.+.+++++++|+.+...
T Consensus 84 ~~~~l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 84 DIDLLEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CHHHHHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 344444433 33443333334444434477899999999877643
No 55
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=61.97 E-value=51 Score=30.33 Aligned_cols=107 Identities=14% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCccEEEeccccHHHHHHHHHhCCCC-Cee-----eecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccC
Q 044053 165 GLTKSIGLSNFSCKKIETILTFATIP-PSI-----NQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLE 238 (327)
Q Consensus 165 Gkir~iGvS~~~~~~l~~~~~~~~~~-~~~-----~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~ 238 (327)
.++-.+-=++++...++++.+...-. +.+ +-+=+--..|+..+.+++++.+.-++.-++=. ..
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~S-----------sN 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNS-----------SN 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCC-----------cc
Confidence 45555555667777666665543211 111 11111112345778999999888887632222 23
Q ss_pred hHHHHHHHHHcCC------CHHHHHHHHHHhcC-CEEeecCCCHHHHHHhh
Q 044053 239 NEALKEIAKAHGK------TVAQVSLRWIVEQG-ATVVVKSLNLERMKQNL 282 (327)
Q Consensus 239 ~~~l~~ia~~~~~------s~aq~al~w~l~~~-~~vi~g~~~~~~l~enl 282 (327)
..+|.++|++++. +..++-..|+.... +.+..|+|+|+.+-+.+
T Consensus 225 T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 225 SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 4789999999873 78899999997665 77889999998765544
No 56
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=61.71 E-value=1.3e+02 Score=27.66 Aligned_cols=162 Identities=13% Similarity=0.137 Sum_probs=81.5
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTAAMYG-TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSAL 116 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL 116 (327)
.+.++..++++.+.+.|++.|.-...-. -..-+-+.++..-+.+ .-.++.|+|-.. .+.+ .-..|...
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~---~~~~i~itTNG~-------ll~~-~~~~L~~a 117 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALP---GIRDLALTTNGY-------LLAR-RAAALKDA 117 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcC---CCceEEEEcCch-------hHHH-HHHHHHHc
Confidence 4567888899999999998876432111 1112334444321101 123677777631 1222 22345555
Q ss_pred CCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC----ccEEEeccccHHHHHHHHHhCC-CCC
Q 044053 117 QMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGL----TKSIGLSNFSCKKIETILTFAT-IPP 191 (327)
Q Consensus 117 ~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk----ir~iGvS~~~~~~l~~~~~~~~-~~~ 191 (327)
|++.|- +-+|..++...... . .....+.++++++.+++.|. |..+.+-..+.+++.++++.+. ...
T Consensus 118 gl~~i~-ISlds~~~e~~~~i----~----~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 118 GLDRVN-VSLDSLDPERFKAI----T----GRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred CCCEEE-EEeccCCHHHhccC----C----CCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 655543 34444432110000 0 01347899999999999885 2244444455566666555442 222
Q ss_pred eeeecccCcccc-----------cHHHHHHHHHcCCEEE
Q 044053 192 SINQVEMHPVWQ-----------QRKLIEFCKAKGIIVT 219 (327)
Q Consensus 192 ~~~q~~~~~~~~-----------~~~ll~~~~~~gi~v~ 219 (327)
.+.-++|.+... ..++++..+++|+.+.
T Consensus 189 ~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 189 QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 333334443221 1456777777665443
No 57
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=61.67 E-value=1.4e+02 Score=28.00 Aligned_cols=145 Identities=15% Similarity=0.130 Sum_probs=87.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQM 118 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~ 118 (327)
+.++..+.+..+.+.|++.|=.-- .+.| +++++. -.+++.|..-.. ...+.+... +-+++|.
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv----~~~v-~avre~-------~G~~~~l~vDaN-~~w~~~~A~----~~~~~l~- 187 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL----PKLF-EAVREK-------FGFEFHLLHDVH-HRLTPNQAA----RFGKDVE- 187 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH----HHHH-HHHHhc-------cCCCceEEEECC-CCCCHHHHH----HHHHHhh-
Confidence 445566677777889998774210 1222 234432 233455544432 223433322 2223332
Q ss_pred CceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeeecc
Q 044053 119 EYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQVE 197 (327)
Q Consensus 119 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~ 197 (327)
.++++++-.|.+. +-++.+.+|++...+. ..|=|.++...+..+++... ++++|+.
T Consensus 188 -~~~l~~iEeP~~~--------------------~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~di~~~d 244 (361)
T cd03322 188 -PYRLFWMEDPTPA--------------------ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERL--IDYIRTT 244 (361)
T ss_pred -hcCCCEEECCCCc--------------------ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CCEEecC
Confidence 3466777766431 2357788888887776 67778888999999988653 4477777
Q ss_pred cCcc---cccHHHHHHHHHcCCEEEEecCC
Q 044053 198 MHPV---WQQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 198 ~~~~---~~~~~ll~~~~~~gi~v~a~~pl 224 (327)
..-. .+-.++.+.|+++|+.++.++..
T Consensus 245 ~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 245 VSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred ccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 6543 23378999999999999876443
No 58
>PRK07094 biotin synthase; Provisional
Probab=60.88 E-value=1.1e+02 Score=28.23 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecc-----ccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecC
Q 044053 149 MDYRGVWEAMEESQMLGLTKSIGLSN-----FSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 149 ~~~~~~~~~l~~l~~~Gkir~iGvS~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 223 (327)
.+.+++.+..+.+++.| ++.+.++. +..+.+.++++...-.+. +.+.+++.....+.+...++.|+..+..+.
T Consensus 70 ls~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 70 LSPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEecc
Confidence 35888999999988877 56666542 345666666544321111 122334444457888999999987766432
Q ss_pred CCCCCccCCCCcccChHHHHHHHHHcCCCHHHH--HHHHHHhcC----CEEeecC--CCHHHHHHhhcc
Q 044053 224 LGAVGKIYGSNQVLENEALKEIAKAHGKTVAQV--SLRWIVEQG----ATVVVKS--LNLERMKQNLGI 284 (327)
Q Consensus 224 l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~--al~w~l~~~----~~vi~g~--~~~~~l~enl~a 284 (327)
=. ...+.+..+.+ +.+..+. +++++...| ..+++|. .+.+++.+.+..
T Consensus 148 Es-----------~~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~ 203 (323)
T PRK07094 148 ET-----------ADKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILF 203 (323)
T ss_pred cc-----------CCHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHH
Confidence 21 12233444433 3444443 577777776 4567774 577877776643
No 59
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=60.81 E-value=75 Score=28.97 Aligned_cols=98 Identities=19% Similarity=0.115 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHH
Q 044053 105 VIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETIL 184 (327)
Q Consensus 105 i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~ 184 (327)
-+..+-+.|.++|+++|++-.++.|... | ...+.++.+..+.+...++...+. -+...++.++
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~~-p---------------~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~ 89 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKWV-P---------------QMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAAL 89 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCcccc-c---------------ccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHH
Confidence 3455666699999999998754444211 0 112235555565554446655554 4677888887
Q ss_pred HhCCCCCeeeecccCcccc--------------cHHHHHHHHHcCCEEEE
Q 044053 185 TFATIPPSINQVEMHPVWQ--------------QRKLIEFCKAKGIIVTA 220 (327)
Q Consensus 185 ~~~~~~~~~~q~~~~~~~~--------------~~~ll~~~~~~gi~v~a 220 (327)
+. +++...+-++.|..+. -.+.+++++++|+.+.+
T Consensus 90 ~~-g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 90 AA-GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred Hc-CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 75 3332222233332211 14689999999998863
No 60
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=60.41 E-value=1.5e+02 Score=27.88 Aligned_cols=101 Identities=17% Similarity=0.098 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHH
Q 044053 103 DHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIET 182 (327)
Q Consensus 103 ~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~ 182 (327)
-.-+..+-+.|.++|+++|++-..-.|... | . ..+.+++++++. +...++..++. .+...++.
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~v-P------q------mad~~ev~~~i~---~~~~~~~~~l~-~n~~die~ 129 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKWV-P------Q------LADAKDVMAAVR---NLEGARFPVLT-PNLKGFEA 129 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCcccc-c------c------cccHHHHHHHHH---hccCCceeEEc-CCHHHHHH
Confidence 344566677799999999998744333211 1 0 112344555553 33345555554 47888888
Q ss_pred HHHhCCCCCeeeecccCcccc--------c------HHHHHHHHHcCCEEEEe
Q 044053 183 ILTFATIPPSINQVEMHPVWQ--------Q------RKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 183 ~~~~~~~~~~~~q~~~~~~~~--------~------~~ll~~~~~~gi~v~a~ 221 (327)
+++. +.+.+.+-++.|..+. + .+++++|+++|+.+.++
T Consensus 130 A~~~-g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 130 AIAA-GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred HHHc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 8875 3332222223332221 1 46889999999998533
No 61
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=59.31 E-value=1.3e+02 Score=26.94 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecC
Q 044053 153 GVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 153 ~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 223 (327)
.+...++.+++.-.+. |.+-+++++.++++++.+ ...+|-+ +....+.++++.++++|..++.+..
T Consensus 63 rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G--~~iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 63 RVIPVLEALRGELDVL-ISVDTFRAEVARAALEAG--ADIINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 3444566666654444 888899999999999874 3345533 3333237899999999999999644
No 62
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=58.79 E-value=59 Score=29.62 Aligned_cols=107 Identities=10% Similarity=0.113 Sum_probs=68.7
Q ss_pred CCccEEEeccccHHHHHHHHHhCCCCC-e---eeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChH
Q 044053 165 GLTKSIGLSNFSCKKIETILTFATIPP-S---INQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENE 240 (327)
Q Consensus 165 Gkir~iGvS~~~~~~l~~~~~~~~~~~-~---~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~ 240 (327)
.++-.+-=++.+.+.+.++.+...-.+ . .+-+=+--..|+..+.+++++-++-++.-+.= .....
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~-----------SsNT~ 225 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKH-----------SSNTQ 225 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCC-----------CccHH
Confidence 445555555666766666554332111 1 12222222234577899999989888763222 22347
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHHhcC-CEEeecCCCHHHHHHhh
Q 044053 241 ALKEIAKAHGK------TVAQVSLRWIVEQG-ATVVVKSLNLERMKQNL 282 (327)
Q Consensus 241 ~l~~ia~~~~~------s~aq~al~w~l~~~-~~vi~g~~~~~~l~enl 282 (327)
+|.++|++++. ++.++-..|..... +.+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 89999999874 78888889998776 77889999998776544
No 63
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=58.61 E-value=1.5e+02 Score=30.54 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCc
Q 044053 41 DALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEY 120 (327)
Q Consensus 41 ~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~ 120 (327)
+-+.++++.|-+.|++.+- .|.-|.. + .+.+. +-++-|++.|..+. -...-.+++..+--+..-
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYseqD~-~-sMHRq-------KADEaY~iGk~l~P----V~AYL~ideii~iak~~~ 106 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYSEQDR-L-SMHRQ-------KADEAYLIGKGLPP----VGAYLAIDEIISIAKKHN 106 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEeccch-h-hhhhh-------ccccceecccCCCc----hhhhhhHHHHHHHHHHcC
Confidence 5688999999999998763 7742222 2 12222 56788999997443 333333444443333344
Q ss_pred eeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHH---------HHhCCCCC
Q 044053 121 LDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETI---------LTFATIPP 191 (327)
Q Consensus 121 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~---------~~~~~~~~ 191 (327)
+|.+ | |.+.- ..+--+.-+...+.| |++||=|- +.++.+ .-.++++
T Consensus 107 vdav--H-PGYGF-----------------LSErsdFA~av~~AG-i~fiGPsp---eVi~~mGDKv~AR~~Ai~agVp- 161 (1176)
T KOG0369|consen 107 VDAV--H-PGYGF-----------------LSERSDFAQAVQDAG-IRFIGPSP---EVIDSMGDKVAARAIAIEAGVP- 161 (1176)
T ss_pred CCee--c-CCccc-----------------cccchHHHHHHHhcC-ceEeCCCH---HHHHHhhhHHHHHHHHHHcCCC-
Confidence 5543 3 32210 011112223344444 89999773 333222 1123333
Q ss_pred eeeecccCcccccHHHHHHHHHcCCEEEEecCCCC
Q 044053 192 SINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 192 ~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
++.---.|...-.+.+++|+++|..||--..+++
T Consensus 162 -vVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGG 195 (1176)
T KOG0369|consen 162 -VVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGG 195 (1176)
T ss_pred -ccCCCCCCcccHHHHHHHHHhcCCcEEEeecccC
Confidence 2322223333448899999999999999999987
No 64
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=58.14 E-value=2e+02 Score=28.60 Aligned_cols=151 Identities=11% Similarity=0.117 Sum_probs=73.3
Q ss_pred EEeCCCC-cCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCC
Q 044053 57 HFDTAAM-YGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPG 135 (327)
Q Consensus 57 ~~DTA~~-YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~ 135 (327)
.+|.-.. +|.++.+-++|++..+.- +.+=++|.|-+... .=-+.+..-+++.-+++ -++++.+|.|.....
T Consensus 59 ~~e~~vv~~Gg~~kL~~~I~~~~~~~---~P~~I~V~tTC~~e-iIGDDi~~v~~~~~~~~---~~pVi~v~t~~f~g~- 130 (513)
T CHL00076 59 IVDRHVLARGSQEKVVDNITRKDKEE---RPDLIVLTPTCTSS-ILQEDLQNFVDRASIES---DSDVILADVNHYRVN- 130 (513)
T ss_pred cchhhhhccchHHHHHHHHHHHHHhc---CCCEEEECCCCchh-hhhcCHHHHHHHhhccc---CCCEEEeCCCCCccc-
Confidence 3333333 366666666776543321 33445555554221 11133333333322223 368999999855321
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH-H--------------HHcCCccEEEecc------ccHHHHHHHHHhCCCCCeee
Q 044053 136 EVGFPVPKEDLLPMDYRGVWEAMEE-S--------------QMLGLTKSIGLSN------FSCKKIETILTFATIPPSIN 194 (327)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~-l--------------~~~Gkir~iGvS~------~~~~~l~~~~~~~~~~~~~~ 194 (327)
.+ ...+.+++++-+ + +..++|.-||.++ .+...+.++++..++.+.++
T Consensus 131 ---------~~--~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v 199 (513)
T CHL00076 131 ---------EL--QAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQI 199 (513)
T ss_pred ---------HH--HHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEE
Confidence 00 011222222221 1 1346688898774 34677888888776553322
Q ss_pred e--------------cccCccc-cc--HHHHHHHH-HcCCEEEEecCCCC
Q 044053 195 Q--------------VEMHPVW-QQ--RKLIEFCK-AKGIIVTAYSPLGA 226 (327)
Q Consensus 195 q--------------~~~~~~~-~~--~~ll~~~~-~~gi~v~a~~pl~~ 226 (327)
- -.+|+.. +. ..+-++.+ +.|+.++...|+|-
T Consensus 200 ~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi 249 (513)
T CHL00076 200 IPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGI 249 (513)
T ss_pred ECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCH
Confidence 1 1122222 11 22344443 56999888778853
No 65
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=57.95 E-value=76 Score=28.19 Aligned_cols=115 Identities=16% Similarity=0.081 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHH----------------HH-HHHHHHhcCCCCCCCcEEEEeccCCCCC
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTAAMYGTEKAL----------------GE-AIAEALRLGLVSSREQLFITSKLWCQNA 100 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~l----------------G~-~L~~~~~~g~~~~R~~v~I~tK~~~~~~ 100 (327)
.+.++..++.++|-+.||.+|=|.-.-.+-..+ -. .|+. ++. ....++|+|=. .
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~-~A~----tgkPvIlSTG~----s 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEY-IAK----TGKPVILSTGM----S 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHH-HHT----T-S-EEEE-TT-----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHH-HHH----hCCcEEEECCC----C
Confidence 578889999999999999999765432111000 00 1111 111 33446666653 3
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHH
Q 044053 101 HRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKK 179 (327)
Q Consensus 101 ~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~ 179 (327)
+-+.|.++++.-.++- .-++.++|+...+.. ..++ --+..+..|++.=- --||.|.|+...
T Consensus 124 tl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~-------~~e~-------~NL~~i~~L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 124 TLEEIERAVEVLREAG---NEDLVLLHCVSSYPT-------PPED-------VNLRVIPTLKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp -HHHHHHHHHHHHHHC---T--EEEEEE-SSSS---------GGG---------TTHHHHHHHHST-SEEEEEE-SSSS
T ss_pred CHHHHHHHHHHHHhcC---CCCEEEEecCCCCCC-------ChHH-------cChHHHHHHHHhcC-CCEEeCCCCCCc
Confidence 3466777766664443 479999999865422 1111 12355566654422 568999998543
No 66
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=57.18 E-value=1.4e+02 Score=26.62 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecC
Q 044053 154 VWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 154 ~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 223 (327)
+...++.+++.-.+ -+.+-+++++.++.+++. +. ..+|-+..- . ..++++.++++|..++.+.-
T Consensus 63 l~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~-G~-~iINsis~~--~-~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 63 VVPVIKALRDQPDV-PISVDTYRAEVARAALEA-GA-DIINDVSGG--Q-DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHc-CC-CEEEECCCC--C-CchhHHHHHHcCCcEEEEeC
Confidence 55666666665223 388889999999999987 33 345544332 2 56799999999999999643
No 67
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=56.23 E-value=2.1e+02 Score=28.08 Aligned_cols=119 Identities=15% Similarity=0.112 Sum_probs=65.0
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCC----ceeEEEeecCCCCCCC
Q 044053 60 TAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQME----YLDLYLVHLPISSKPG 135 (327)
Q Consensus 60 TA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d----~iDl~~lH~p~~~~~~ 135 (327)
..-.||.|+-|-++|++..+... ..+=++|.|-....-. -+.+..-+++.-++|.-+ .+.++.+|.|+.....
T Consensus 67 ~dvVfGG~~kL~~aI~~~~~~~~--~p~~I~V~ttC~~eiI-GDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~ 143 (457)
T TIGR02932 67 ESAVFGGAKRIEEGVLTLARRYP--NLRVIPIITTCSTETI-GDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQ 143 (457)
T ss_pred CceEECcHHHHHHHHHHHHHhCC--CCCEEEEECCchHHhh-cCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcH
Confidence 33568888888899987644310 1234677776533211 244444444433332211 4788999988764210
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH-HH-----HcCCccEEEeccc--cHHHHHHHHHhCCCCCee
Q 044053 136 EVGFPVPKEDLLPMDYRGVWEAMEE-SQ-----MLGLTKSIGLSNF--SCKKIETILTFATIPPSI 193 (327)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~-l~-----~~Gkir~iGvS~~--~~~~l~~~~~~~~~~~~~ 193 (327)
....+.++++|-+ +. .+++|.=||-.+. +.+.++++++..++++.+
T Consensus 144 ------------~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 144 ------------VTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred ------------HHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 1123444444432 31 2466877764432 456788888887766443
No 68
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=55.70 E-value=66 Score=29.32 Aligned_cols=106 Identities=18% Similarity=0.277 Sum_probs=70.5
Q ss_pred CccEEEeccccHHHHHHHHHhCC--CC----CeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccCh
Q 044053 166 LTKSIGLSNFSCKKIETILTFAT--IP----PSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLEN 239 (327)
Q Consensus 166 kir~iGvS~~~~~~l~~~~~~~~--~~----~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~ 239 (327)
++-++-=.+.+.+...++.+... ++ |..+-+=|--.+|+..+.+.+.+-++-++.-++=.+ ..
T Consensus 159 ~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSS-----------Ns 227 (294)
T COG0761 159 KLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSS-----------NS 227 (294)
T ss_pred cEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCc-----------cH
Confidence 45555444556666655554432 21 112222222334557788889998888887554433 35
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhcC-CEEeecCCCHHHHHHhh
Q 044053 240 EALKEIAKAHGK------TVAQVSLRWIVEQG-ATVVVKSLNLERMKQNL 282 (327)
Q Consensus 240 ~~l~~ia~~~~~------s~aq~al~w~l~~~-~~vi~g~~~~~~l~enl 282 (327)
.+|.++|+++|. ++.++=..|..... +.+-.|+|+|+-+-+++
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHH
Confidence 789999999986 67888889998866 67889999999887765
No 69
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=55.22 E-value=1.8e+02 Score=27.17 Aligned_cols=24 Identities=4% Similarity=0.003 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCC
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTA 61 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA 61 (327)
.+.++..++++...++||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 457888899999999999999984
No 70
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=55.18 E-value=1.6e+02 Score=26.36 Aligned_cols=105 Identities=12% Similarity=0.012 Sum_probs=63.4
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHH
Q 044053 100 AHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKK 179 (327)
Q Consensus 100 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~ 179 (327)
.+++.+.+..++.++ -|-|+||+=. .|.. ....++.-+.+..+++.-.+ -|.|-+++++.
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~----------------~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v 82 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG----------------LDGVSAMKWLLNLLATEPTV-PLMLDSTNWEV 82 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC----------------CCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHH
Confidence 345677777777765 4999999743 1210 00122333333333322122 37888999999
Q ss_pred HHHHHHhCCCCCeeeecccCccc-ccHHHHHHHHHcCCEEEEecCC
Q 044053 180 IETILTFATIPPSINQVEMHPVW-QQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 180 l~~~~~~~~~~~~~~q~~~~~~~-~~~~ll~~~~~~gi~v~a~~pl 224 (327)
++.+++.+.-...+|-+...... +..++++.++++|..++.+..-
T Consensus 83 ~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 83 IEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 99999975334456644432211 2367889999999999987543
No 71
>PRK07534 methionine synthase I; Validated
Probab=54.70 E-value=1.9e+02 Score=27.12 Aligned_cols=209 Identities=13% Similarity=0.098 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHcCCCEEeCCCCcC-CHHH-------------HHHHHH--HHHhcCCCCCCCcEEEEeccCCCC----
Q 044053 40 TDALKLAVLEAIKLGYRHFDTAAMYG-TEKA-------------LGEAIA--EALRLGLVSSREQLFITSKLWCQN---- 99 (327)
Q Consensus 40 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~-------------lG~~L~--~~~~~g~~~~R~~v~I~tK~~~~~---- 99 (327)
++...++=+..+++|-+.|=|.. |+ |-.. .-.+++ +..+.. ...+++|+.-+++..
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~TnT-y~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~---~~~~~~VaGsIGP~g~~l~ 119 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTNS-FGGTAARLKLHDAQDRVHELNRAAAEIAREVADK---AGRKVIVAGSVGPTGEIME 119 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEecC-cccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh---cCCccEEEEecCCCccccC
Confidence 44455555556699999998664 54 3111 111111 110111 123578888886532
Q ss_pred ----CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccc
Q 044053 100 ----AHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF 175 (327)
Q Consensus 100 ----~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~ 175 (327)
.+.+.+.......++.|--..+|++++--. .+..++..+++.+++.|+=-.+.++..
T Consensus 120 ~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~-------------------p~l~E~~a~~~~~~~~~~Pv~vSft~~ 180 (336)
T PRK07534 120 PMGALTHALAVEAFHEQAEGLKAGGADVLWVETI-------------------SAPEEIRAAAEAAKLAGMPWCGTMSFD 180 (336)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc-------------------CCHHHHHHHHHHHHHcCCeEEEEEEEC
Confidence 345677788888888885456999999854 237777788888887777555555542
Q ss_pred ---------cHHHHHHHHHhCCCCCeeeecccCc-cccc-HHHHHHHHHc-CCEEEEecCCCCCCcc-CCCCcccChHHH
Q 044053 176 ---------SCKKIETILTFATIPPSINQVEMHP-VWQQ-RKLIEFCKAK-GIIVTAYSPLGAVGKI-YGSNQVLENEAL 242 (327)
Q Consensus 176 ---------~~~~l~~~~~~~~~~~~~~q~~~~~-~~~~-~~ll~~~~~~-gi~v~a~~pl~~~G~l-~~~~~~~~~~~l 242 (327)
+...+.+.++.....++++-+++.. ...- ..++...... ++.+++|--- |.. +......
T Consensus 181 ~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNa---G~p~~~~~~~~----- 252 (336)
T PRK07534 181 TAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNA---GIPKYVDGHIH----- 252 (336)
T ss_pred CCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCC---CCcccCCCccc-----
Confidence 2233334444333345677778774 2222 3344444433 5677777443 321 1001100
Q ss_pred HHHHHHcCCC---HHHHHHHHHHhcCCEEeecC--CCHHHHHHhhcccc
Q 044053 243 KEIAKAHGKT---VAQVSLRWIVEQGATVVVKS--LNLERMKQNLGIFD 286 (327)
Q Consensus 243 ~~ia~~~~~s---~aq~al~w~l~~~~~vi~g~--~~~~~l~enl~a~~ 286 (327)
+..+ .++.+-.| ...|+.+|=|+ ++|+|+++-.++++
T Consensus 253 ------~~~~p~~~~~~~~~~-~~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 253 ------YDGTPELMAEYAVLA-RDAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred ------cCCCHHHHHHHHHHH-HHcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 1112 35566777 45688888886 78999988766554
No 72
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=54.53 E-value=26 Score=33.90 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCC-h--------hhHHHHHHH--HHHHhCCCceeEEEeecCCCCCC
Q 044053 66 TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAH-R--------DHVIPALKK--SLSALQMEYLDLYLVHLPISSKP 134 (327)
Q Consensus 66 sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~-~--------~~i~~~le~--SL~rL~~d~iDl~~lH~p~~~~~ 134 (327)
.-+.+-++-++.+. |- -+.++++++-++.-... + -.|...|++ .-+||.+.|+|..
T Consensus 149 TyeT~~~~~r~h~~-gd--L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~---------- 215 (561)
T COG2987 149 TYETFAEAGRQHFG-GD--LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI---------- 215 (561)
T ss_pred hHHHHHHHHHHhcC-CC--ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh----------
Confidence 33334444444443 22 57788998887542110 0 111112233 3478889999943
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCC-CCCeeeecccC
Q 044053 135 GEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFAT-IPPSINQVEMH 199 (327)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~-~~~~~~q~~~~ 199 (327)
..+++++++..++..++|+-.+||+-..-++.++++++..- .+.+.-|.+.|
T Consensus 216 -------------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 216 -------------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred -------------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 23489999999999999999999999998999999988642 33444577655
No 73
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=54.06 E-value=28 Score=31.67 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=64.0
Q ss_pred CCccEEEeccccHHHHHHHHHhCC--CCCee----eecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccC
Q 044053 165 GLTKSIGLSNFSCKKIETILTFAT--IPPSI----NQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLE 238 (327)
Q Consensus 165 Gkir~iGvS~~~~~~l~~~~~~~~--~~~~~----~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~ 238 (327)
+++-.+.=++++.....++.+... ++-.. +.+=+--..|+..+.+++++-++-++.-++- ...
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~-----------SsN 223 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKN-----------SSN 223 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT------------HH
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCC-----------Ccc
Confidence 477777777888777666655432 21111 1111111234577888888888777763222 223
Q ss_pred hHHHHHHHHHcCC------CHHHHHHHHHHhcC-CEEeecCCCHHHHHHhh
Q 044053 239 NEALKEIAKAHGK------TVAQVSLRWIVEQG-ATVVVKSLNLERMKQNL 282 (327)
Q Consensus 239 ~~~l~~ia~~~~~------s~aq~al~w~l~~~-~~vi~g~~~~~~l~enl 282 (327)
..+|.++|++++. ++.++-..|..... +.+..|+|+|+.+-+.+
T Consensus 224 T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 224 TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 4789999999874 78899999998877 78899999998876654
No 74
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=54.04 E-value=2.1e+02 Score=27.44 Aligned_cols=115 Identities=18% Similarity=0.111 Sum_probs=66.1
Q ss_pred eCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCC
Q 044053 59 DTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVG 138 (327)
Q Consensus 59 DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~ 138 (327)
+..-.||.|..|-++|++..+.- +.+-++|.|-....- --+.+..-+++.-+++ -+.++.+|.|.....
T Consensus 63 E~d~VfGg~~~L~~~i~~~~~~~---~P~~i~v~~tC~~~~-iGdDi~~v~~~~~~~~---~~~vi~v~t~gf~g~---- 131 (410)
T cd01968 63 EKDVIFGGEKKLYKAILEIIERY---HPKAVFVYSTCVVAL-IGDDIDAVCKTASEKF---GIPVIPVHSPGFVGN---- 131 (410)
T ss_pred ccceeeccHHHHHHHHHHHHHhC---CCCEEEEECCCchhh-hccCHHHHHHHHHHhh---CCCEEEEECCCcccC----
Confidence 44456888888889998875542 445567777753321 1244444444443344 367889998765321
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHH---------HcCCccEEEecccc--HHHHHHHHHhCCCCCe
Q 044053 139 FPVPKEDLLPMDYRGVWEAMEESQ---------MLGLTKSIGLSNFS--CKKIETILTFATIPPS 192 (327)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~l~---------~~Gkir~iGvS~~~--~~~l~~~~~~~~~~~~ 192 (327)
.....+.++++|-+.. +.+.|.-||-.++. ...+.++++..++++.
T Consensus 132 --------~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 188 (410)
T cd01968 132 --------KNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRVL 188 (410)
T ss_pred --------hhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeEE
Confidence 0112334444444332 14678888844433 5678888888776543
No 75
>PRK14017 galactonate dehydratase; Provisional
Probab=53.99 E-value=2e+02 Score=27.26 Aligned_cols=150 Identities=16% Similarity=0.188 Sum_probs=87.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCC-----CcCCHHHHH------HHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHH
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAA-----MYGTEKALG------EAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIP 107 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~-----~YgsE~~lG------~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~ 107 (327)
+.++..+.+..+.+.|++.|=.-- .++.+.-+. +++++. --+++.|..=.. ...+.+..
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~-------~g~~~~l~vDaN-~~w~~~~A-- 193 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREA-------VGPEIGIGVDFH-GRVHKPMA-- 193 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHH-------hCCCCeEEEECC-CCCCHHHH--
Confidence 456666777888899999885421 111111111 233332 123444444432 22333332
Q ss_pred HHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEeccccHHHHHHHHHh
Q 044053 108 ALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSCKKIETILTF 186 (327)
Q Consensus 108 ~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~ 186 (327)
.+-+++|. .+++.++-.|... +-++.+.+|++...+. ..|=|.++...+..+++.
T Consensus 194 --~~~~~~l~--~~~~~~iEeP~~~--------------------~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~ 249 (382)
T PRK14017 194 --KVLAKELE--PYRPMFIEEPVLP--------------------ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA 249 (382)
T ss_pred --HHHHHhhc--ccCCCeEECCCCc--------------------CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc
Confidence 22233332 3456666666431 1246788888887766 667778889999999886
Q ss_pred CCCCCeeeecccCcc---cccHHHHHHHHHcCCEEEEecCC
Q 044053 187 ATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 187 ~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~~pl 224 (327)
..+ +++|+..... .+-.++.+.|+++||.++..+..
T Consensus 250 ~a~--d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 250 GGV--DIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred CCC--CeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 543 4777665544 23378999999999999876543
No 76
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=53.95 E-value=1.6e+02 Score=26.13 Aligned_cols=64 Identities=11% Similarity=0.001 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCccEEEeccc-cHHHHHHHHHhCCCCCeeeecc-cCcccccHHHHHHHHHcCCEE
Q 044053 155 WEAMEESQMLGLTKSIGLSNF-SCKKIETILTFATIPPSINQVE-MHPVWQQRKLIEFCKAKGIIV 218 (327)
Q Consensus 155 ~~~l~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~~~q~~-~~~~~~~~~ll~~~~~~gi~v 218 (327)
++.+.++++.-.+.-|..... +.+.+.++++..+++-++.-.- |..-..-.++...|+++||.+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 344555555556666665544 4778888887664543332111 111112267888899888864
No 77
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=53.61 E-value=2.5e+02 Score=28.21 Aligned_cols=140 Identities=11% Similarity=0.105 Sum_probs=81.7
Q ss_pred eeccccCCChHHHHHHHHHHHHcCCCEE-eCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEe--------cc--CCCC
Q 044053 31 LGCAVDKSDTDALKLAVLEAIKLGYRHF-DTAAMYGTEKALGEAIAEALRLGLVSSREQLFITS--------KL--WCQN 99 (327)
Q Consensus 31 lG~~~~~~~~~~~~~~l~~A~~~Gi~~~-DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~t--------K~--~~~~ 99 (327)
+|++....+-++-.+-+..|++.|-..+ |-+. .|+-..+-+++-+ ...+=|-| |+ ...+
T Consensus 222 IGtS~~~s~ieeEveK~~~A~~~GADtvMDLST-Ggdi~~~R~~Il~---------~spvPvGTVPiYqA~~~~~~~~~~ 291 (607)
T PRK09284 222 IGNSAVTSSIEEEVEKMVWATRWGADTVMDLST-GKNIHETREWILR---------NSPVPIGTVPIYQALEKVNGVAED 291 (607)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCEEEecCC-CCCHHHHHHHHHH---------cCCCCccCccHHHHHHHhcCChhh
Confidence 3444333444555566789999997654 5442 2333333444321 11122221 11 1235
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHH
Q 044053 100 AHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKK 179 (327)
Q Consensus 100 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~ 179 (327)
.+.+.+...+++..+ +-||.+-+|.-. .++.++.++ + |-.|+-+-...-
T Consensus 292 lt~e~~~d~ieeQAe----qGVDf~TIHaGv-----------------------~~~~v~~~~--~--R~tgIVSRGGSi 340 (607)
T PRK09284 292 LTWEIFRDTLIEQAE----QGVDYFTIHAGV-----------------------LLRYVPLTA--K--RVTGIVSRGGSI 340 (607)
T ss_pred CCHHHHHHHHHHHHH----hCCCEEEEChhh-----------------------HHHHHHHHh--C--cccCcccCCHHH
Confidence 667777777777766 458888999641 234555554 3 777887777777
Q ss_pred HHHHHHhCCCCCeeeecccCccccc-HHHHHHHHHcCCEEE
Q 044053 180 IETILTFATIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVT 219 (327)
Q Consensus 180 l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~ 219 (327)
+...+.... .=|+++.. .++++.|++++|.+-
T Consensus 341 ma~Wml~h~--------kENplYe~FD~ileI~k~YDVtlS 373 (607)
T PRK09284 341 MAKWCLAHH--------KENFLYTHFEEICEIMAAYDVSFS 373 (607)
T ss_pred HHHHHHHcC--------CcCcHHHHHHHHHHHHHHhCeeee
Confidence 666554332 33555555 789999999999984
No 78
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=53.43 E-value=47 Score=24.07 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=36.5
Q ss_pred HHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEec
Q 044053 158 MEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 158 l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~ 222 (327)
++++++.||+. + ...+..+.++......+++--..++ .....+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~-----G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-I-----GTKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-E-----cHHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45666777643 2 3456666666665555555544444 233678888999999987664
No 79
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=53.36 E-value=98 Score=27.81 Aligned_cols=78 Identities=19% Similarity=0.119 Sum_probs=53.1
Q ss_pred ChH-HHHHHHHHHHHcCCCEEeCCCCcC----CHHHHHHHHHHHHhc-CCCCCCCcEEEEeccCCCCCChhhHHHHHHHH
Q 044053 39 DTD-ALKLAVLEAIKLGYRHFDTAAMYG----TEKALGEAIAEALRL-GLVSSREQLFITSKLWCQNAHRDHVIPALKKS 112 (327)
Q Consensus 39 ~~~-~~~~~l~~A~~~Gi~~~DTA~~Yg----sE~~lG~~L~~~~~~-g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~S 112 (327)
+++ +...+.+.|.++|..|+=|+..|+ +.+.+ +.+++..++ + ...+ +--|....-.+.+...+-++.-
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv-~lm~~~i~~~~---~~~~--vgIKAsGGIrt~~~A~~~i~ag 217 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAA-RIMLEVIRDMG---VAKT--VGFKPAGGVRTAEDAAQYLALA 217 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHHHhcc---cCCC--eeEEccCCCCCHHHHHHHHHHH
Confidence 445 478889999999999999999996 22222 233332110 1 1122 4556655455779999999999
Q ss_pred HHHhCCCcee
Q 044053 113 LSALQMEYLD 122 (327)
Q Consensus 113 L~rL~~d~iD 122 (327)
-+.||.+|++
T Consensus 218 ~~~lg~~~~~ 227 (257)
T PRK05283 218 DEILGADWAD 227 (257)
T ss_pred HHHhChhhcC
Confidence 9999998887
No 80
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=53.32 E-value=1.7e+02 Score=26.13 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=66.0
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEE-eecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHH
Q 044053 101 HRDHVIPALKKSLSALQMEYLDLYL-VHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKK 179 (327)
Q Consensus 101 ~~~~i~~~le~SL~rL~~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~ 179 (327)
+.+.+.+..++.+ .-|-|+||+=- --+|... +.+. ....+.+...++.+++.-++- |.+-+++++.
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~-------~~~~----~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v 88 (258)
T cd00423 22 SLDKALEHARRMV-EEGADIIDIGGESTRPGAE-------PVSV----EEELERVIPVLRALAGEPDVP-ISVDTFNAEV 88 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC-------cCCH----HHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHH
Confidence 4455555555544 45889999752 1122110 0000 011345666777776653443 8999999999
Q ss_pred HHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCC
Q 044053 180 IETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 180 l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 224 (327)
++.+++.+ .+.+|-+ +....+.++++.++++|..++.+..-
T Consensus 89 ~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 89 AEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred HHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcC
Confidence 99999976 4455533 33322378999999999999987644
No 81
>PRK06361 hypothetical protein; Provisional
Probab=53.28 E-value=1.4e+02 Score=25.41 Aligned_cols=184 Identities=14% Similarity=0.072 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCCEEeCCCCcC--CHH-HH---HHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 044053 43 LKLAVLEAIKLGYRHFDTAAMYG--TEK-AL---GEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSAL 116 (327)
Q Consensus 43 ~~~~l~~A~~~Gi~~~DTA~~Yg--sE~-~l---G~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL 116 (327)
..++++.|.+.|+..|=-+++.. +.. .+ -+..++. +.. ..=+++...-+.. ..++.+ ..+...++++
T Consensus 12 ~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~~---~~i~v~~GiE~~~--~~~~~~-~~~~~~~~~~ 84 (212)
T PRK06361 12 PSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-ELY---WDIEVIPGVELTH--VPPKLI-PKLAKKARDL 84 (212)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hhc---CCCEEEEEEEEcc--cCchhh-chHHHHHHHC
Confidence 57889999999999997777754 111 11 1111111 000 1112333332221 112232 3334555565
Q ss_pred CCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeec
Q 044053 117 QMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQV 196 (327)
Q Consensus 117 ~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~ 196 (327)
+ .|+..+|......+ . .. ..-.++.+.|.+.-+|=-..-...+.+++...++.+.++-
T Consensus 85 ~---~~~~svH~~~~~~~----------------~-~~-~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~- 142 (212)
T PRK06361 85 G---AEIVVVHGETIVEP----------------V-EE-GTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITA- 142 (212)
T ss_pred C---CEEEEECCCCcchh----------------h-hh-hhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEEC-
Confidence 4 55568994321110 0 00 0114567888877666433211222233333333222221
Q ss_pred ccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHHHHHHHHH
Q 044053 197 EMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQVSLRWI 261 (327)
Q Consensus 197 ~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~al~w~ 261 (327)
..+.......+++.|++.|+.++.-|.... +......+.+..++++.|.+..++---+.
T Consensus 143 ~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~------~~d~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 143 RKGHSLTNGHVARIAREAGAPLVINTDTHA------PSDLITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred CCCcccchHHHHHHHHHhCCcEEEECCCCC------HHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 111112236799999999999887766643 12223356778888888888887655443
No 82
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=52.97 E-value=97 Score=30.45 Aligned_cols=119 Identities=16% Similarity=0.223 Sum_probs=65.5
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 044053 85 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQML 164 (327)
Q Consensus 85 ~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 164 (327)
.+.+++|+-.+...|.....+..-+.+.+++-++.-=-+. +. .++.. ..+.......+.++++.
T Consensus 350 ~~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~pqQI~-lE-------------lTER~--f~D~~~~~~iI~r~Rea 413 (524)
T COG4943 350 QHRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRPQQIA-LE-------------LTERT--FADPKKMTPIILRLREA 413 (524)
T ss_pred hCcceEEEEeeeehhhcCchHHHHHHHHHHhcCcChHHhe-ee-------------hhhhh--hcCchhhhHHHHHHHhc
Confidence 4667888888877777777788888888887765221111 10 01111 23456677889999999
Q ss_pred CCccEE-----EeccccHHHHHHH-HHhCCCCCeeee-cccCcccc--cHHHHHHHHHcCCEEEEe
Q 044053 165 GLTKSI-----GLSNFSCKKIETI-LTFATIPPSINQ-VEMHPVWQ--QRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 165 Gkir~i-----GvS~~~~~~l~~~-~~~~~~~~~~~q-~~~~~~~~--~~~ll~~~~~~gi~v~a~ 221 (327)
|.--+| |-||.. -+.++ ++.-+++-++++ +.++.... -..+++.|+++|+.++|=
T Consensus 414 G~~IyIDDFGTGYSnL~--YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 414 GHEIYIDDFGTGYSNLH--YLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred CCeEEEccCcCcchhHH--HHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 984444 334322 11111 011112212221 11222111 166899999999999884
No 83
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=52.40 E-value=1.9e+02 Score=26.65 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQM 118 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~ 118 (327)
+.++..+.+....+.|++.|=.--.=..+...=+++++. - .++-|.--.. ...+.+.++ .+++|.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~-------~-~~~~l~vDaN-~~~~~~~a~-----~~~~l~- 196 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLR-------F-PQIPLVIDAN-ESYDLQDFP-----RLKELD- 196 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHh-------C-CCCcEEEECC-CCCCHHHHH-----HHHHHh-
Confidence 446667777888899999873211001122222344443 2 2333333332 223444431 134443
Q ss_pred CceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeeecc
Q 044053 119 EYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQVE 197 (327)
Q Consensus 119 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~ 197 (327)
..++.++-.|.. .+-++.+.++++.-.+. ..|=|.++...+..+++...+ +++|+.
T Consensus 197 -~~~~~~iEeP~~--------------------~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--dvi~~d 253 (324)
T TIGR01928 197 -RYQLLYIEEPFK--------------------IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNV--KVINIK 253 (324)
T ss_pred -hCCCcEEECCCC--------------------hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCC--CEEEeC
Confidence 235666666632 23457788888876665 667888899999998876543 467766
Q ss_pred cCcc---cccHHHHHHHHHcCCEEEEecCCCC
Q 044053 198 MHPV---WQQRKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 198 ~~~~---~~~~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
..-. ..-.++...|+.+|+.++..+.+.+
T Consensus 254 ~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 254 PGRLGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred cchhcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 5443 2236899999999999987655543
No 84
>PRK07945 hypothetical protein; Provisional
Probab=51.87 E-value=2.1e+02 Score=26.77 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCCEEeCCCCcC--------CHHHHHHHHHHH--HhcCCCCCCCcEEEEeccCCCCCChhhHHHHHH
Q 044053 41 DALKLAVLEAIKLGYRHFDTAAMYG--------TEKALGEAIAEA--LRLGLVSSREQLFITSKLWCQNAHRDHVIPALK 110 (327)
Q Consensus 41 ~~~~~~l~~A~~~Gi~~~DTA~~Yg--------sE~~lG~~L~~~--~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le 110 (327)
....+++++|++.|+..+=.+++.. +...+-..+... ++.. .++ +-|-.=+-. +.-++.-....+
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~k---y~~-I~Il~GiE~-d~~~~g~~~~~~ 185 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEE---LAP-FRILTGIEV-DILDDGSLDQEP 185 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHh---cCC-ceEEEEeEe-cccCCCCcchhH
Confidence 3467889999999999886666632 122222222211 0111 222 322222100 111111112223
Q ss_pred HHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEe
Q 044053 111 KSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGL 172 (327)
Q Consensus 111 ~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGv 172 (327)
+.|+. .||+ +.-+|+... .+.....+.|.++.+.|++.-+|=
T Consensus 186 ~~l~~--~D~v-IgSvH~~~~-----------------~~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 186 ELLDR--LDVV-VASVHSKLR-----------------MDAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred HHHHh--CCEE-EEEeecCCC-----------------CCHHHHHHHHHHHhcCCCCeEEec
Confidence 33443 5777 778897632 123456678888888888888884
No 85
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=50.92 E-value=1.7e+02 Score=25.41 Aligned_cols=70 Identities=17% Similarity=0.106 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeeecccCcc---cccHHHHHHHHHcCCEEEEecCCCC
Q 044053 155 WEAMEESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 155 ~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
++.+.+|++...+. ..+=|.++...+.++++... ..++|+..+.. ..-.++..+|+++|+.++..+.+..
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~--~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGA--VDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 46677777777666 44555667777777776543 34677665543 2226789999999999998877653
No 86
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=49.52 E-value=2.2e+02 Score=26.37 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=57.1
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHH----HHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHH
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTAAMYGTEKA----LGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSL 113 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~----lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL 113 (327)
.+.++...+++.+.+.|+..|--. |-|.. +-+.++...+.+ ...++.|+|-. ..+. ..-+.|
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---GGEPllr~dl~~li~~i~~~~---~l~~i~itTNG-------~ll~-~~~~~L 110 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---GGEPLVRRGCDQLVARLGKLP---GLEELSLTTNG-------SRLA-RFAAEL 110 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---CcCCCccccHHHHHHHHHhCC---CCceEEEEeCh-------hHHH-HHHHHH
Confidence 456788899999999999877543 32222 223333221111 12256676663 1122 234556
Q ss_pred HHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 044053 114 SALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGL 166 (327)
Q Consensus 114 ~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 166 (327)
+..|+++|- +-|+..++..... .. ....++.+++.++.+++.|.
T Consensus 111 ~~aGl~~v~-ISlDs~~~e~~~~----i~----~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 111 ADAGLKRLN-ISLDTLRPELFAA----LT----RNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred HHcCCCeEE-EEeccCCHHHhhh----hc----CCCCHHHHHHHHHHHHHcCC
Confidence 667777765 3455443221100 00 01247788888888888774
No 87
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=49.02 E-value=2.2e+02 Score=26.25 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=69.8
Q ss_pred HHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccE-EEeccc---cHHHHHHHHHh
Q 044053 111 KSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKS-IGLSNF---SCKKIETILTF 186 (327)
Q Consensus 111 ~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~-iGvS~~---~~~~l~~~~~~ 186 (327)
...+++| .|++-+|-..... .+.+....++.+.||++.+.=+|-. ||=|.. ++..++++.+.
T Consensus 158 k~Vk~fg---admvTiHlIsTdP-----------ki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEv 223 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDP-----------KIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEV 223 (403)
T ss_pred HHHHHhC---CceEEEEeecCCc-----------cccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHh
Confidence 3456676 6788888764421 1224568999999999999988764 577765 47888998888
Q ss_pred CCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCC
Q 044053 187 ATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 187 ~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
+.-.- +.-...|+-..-+.+.+.+.++|=.|++|+++..
T Consensus 224 aEGeR-clLaSanldlDy~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 224 AEGER-CLLASANLDLDYERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred hcCce-EEeeccccccCHHHHHHHHHhcCceEEEeeccCh
Confidence 76331 2222333322227799999999999999999864
No 88
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=48.68 E-value=25 Score=24.01 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 044053 241 ALKEIAKAHGKTVAQVSLRWIV 262 (327)
Q Consensus 241 ~l~~ia~~~~~s~aq~al~w~l 262 (327)
.+.+||+++|+++.+++..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 3679999999999999999985
No 89
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=48.46 E-value=40 Score=29.47 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcCCccEEEe----ccccHHHHHHHHHhCCCCCeeeecccCccccc--HHHHHHHHHcCCEEEEecC
Q 044053 150 DYRGVWEAMEESQMLGLTKSIGL----SNFSCKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 150 ~~~~~~~~l~~l~~~Gkir~iGv----S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~p 223 (327)
..++..++|..++ +.+|.. |.+....++.+.+..+.. .|.|+++. .+++...-+.|..++.-++
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 3677777888877 555543 445556677777766543 56777764 6777777777777766666
Q ss_pred CCCCCcc---CCCC-cccChHHHHHHHHHcCCCHH
Q 044053 224 LGAVGKI---YGSN-QVLENEALKEIAKAHGKTVA 254 (327)
Q Consensus 224 l~~~G~l---~~~~-~~~~~~~l~~ia~~~~~s~a 254 (327)
-+. |+. .|.. +....+.+..++++||+.|+
T Consensus 144 sa~-gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAE-GLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ecc-CCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 654 543 1211 11123678888888988765
No 90
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.78 E-value=67 Score=29.94 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=80.4
Q ss_pred ccCeeecCCCCCCcccCcceeeccccCCChHHHHHHHHHHHHcCCC--EEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCc
Q 044053 11 NVPKLKLSSSSGHLNMPVIGLGCAVDKSDTDALKLAVLEAIKLGYR--HFDTAAMYGTEKALGEAIAEALRLGLVSSREQ 88 (327)
Q Consensus 11 ~m~~~~Lg~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~--~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~ 88 (327)
.|++..+++ | ..+-.+|+|+ +| .-.++.|-..|.+ .||++..= .| ++++.+ | -|.
T Consensus 173 pLk~~g~~p--G-~~vgI~GlGG--LG------h~aVq~AKAMG~rV~vis~~~~k-ke----ea~~~L---G----Ad~ 229 (360)
T KOG0023|consen 173 PLKRSGLGP--G-KWVGIVGLGG--LG------HMAVQYAKAMGMRVTVISTSSKK-KE----EAIKSL---G----ADV 229 (360)
T ss_pred hhHHcCCCC--C-cEEEEecCcc--cc------hHHHHHHHHhCcEEEEEeCCchh-HH----HHHHhc---C----cce
Confidence 477777886 8 8888888888 33 3347777777865 56765321 23 456654 3 344
Q ss_pred EEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 044053 89 LFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTK 168 (327)
Q Consensus 89 v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir 168 (327)
++++||- ....+++..++.- +.+.+--+- ....-..++-+|..|++-
T Consensus 230 fv~~~~d-------~d~~~~~~~~~dg-~~~~v~~~a-------------------------~~~~~~~~~~lk~~Gt~V 276 (360)
T KOG0023|consen 230 FVDSTED-------PDIMKAIMKTTDG-GIDTVSNLA-------------------------EHALEPLLGLLKVNGTLV 276 (360)
T ss_pred eEEecCC-------HHHHHHHHHhhcC-cceeeeecc-------------------------ccchHHHHHHhhcCCEEE
Confidence 4555542 3344444444431 222222110 122336778899999999
Q ss_pred EEEeccccHHHHHHHHHhCCCCCeeeecccCccccc---HHHHHHHHHcCCEE
Q 044053 169 SIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIV 218 (327)
Q Consensus 169 ~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v 218 (327)
.+|+-+.. -.+.-..-. +-...+..|..-.. ++++++|.+++|..
T Consensus 277 ~vg~p~~~-~~~~~~~li----l~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 277 LVGLPEKP-LKLDTFPLI----LGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred EEeCcCCc-ccccchhhh----cccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 99998752 111110000 01122233333222 78999999988754
No 91
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=46.87 E-value=2.8e+02 Score=26.85 Aligned_cols=117 Identities=11% Similarity=0.158 Sum_probs=62.4
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC-CceeEEEeecCCCCCCCCCC
Q 044053 60 TAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQM-EYLDLYLVHLPISSKPGEVG 138 (327)
Q Consensus 60 TA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~-d~iDl~~lH~p~~~~~~~~~ 138 (327)
..-.||.|+.|-++|++..+.. +.+=++|.|-.-.. .--+.+..-+++.-++... ..+.++.++.|......
T Consensus 63 ~d~V~Gg~~~L~~ai~~~~~~~---~p~~I~v~ttC~~~-iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~--- 135 (435)
T cd01974 63 DAAVFGGQNNLIDGLKNAYAVY---KPDMIAVSTTCMAE-VIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSH--- 135 (435)
T ss_pred CceEECcHHHHHHHHHHHHHhc---CCCEEEEeCCchHh-hhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCH---
Confidence 3456888888888988764432 34456777765322 1124444444443333311 14789999988653210
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH-HH-------HcCCccEEE-ecc-cc-HHHHHHHHHhCCCCCe
Q 044053 139 FPVPKEDLLPMDYRGVWEAMEE-SQ-------MLGLTKSIG-LSN-FS-CKKIETILTFATIPPS 192 (327)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~-l~-------~~Gkir~iG-vS~-~~-~~~l~~~~~~~~~~~~ 192 (327)
....+.++++|-+ +. +.++|.=|| ..+ .+ .+++.++++..++.+.
T Consensus 136 ---------~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 136 ---------ITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred ---------HHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 0113334444432 22 233465665 222 22 6788889988877653
No 92
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.10 E-value=2.2e+02 Score=25.50 Aligned_cols=94 Identities=22% Similarity=0.253 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-ccEEEeccccHHHHHHHH
Q 044053 106 IPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGL-TKSIGLSNFSCKKIETIL 184 (327)
Q Consensus 106 ~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk-ir~iGvS~~~~~~l~~~~ 184 (327)
+..+-+.|.++|+++|.+-. |.. ..+.+++.+.+.+.++ .+-.+....+...++.+.
T Consensus 24 k~~i~~~L~~~Gv~~IEvG~---P~~-------------------~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~ 81 (262)
T cd07948 24 KIEIAKALDAFGVDYIELTS---PAA-------------------SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAV 81 (262)
T ss_pred HHHHHHHHHHcCCCEEEEEC---CCC-------------------CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHH
Confidence 34455559999999998873 422 2334455555555454 444556667778888888
Q ss_pred HhCCCCCeeeecccCcccc---------c-----HHHHHHHHHcCCEEEEec
Q 044053 185 TFATIPPSINQVEMHPVWQ---------Q-----RKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 185 ~~~~~~~~~~q~~~~~~~~---------~-----~~ll~~~~~~gi~v~a~~ 222 (327)
+. +++...+-++.|.... + .+++.+++++|+.+...-
T Consensus 82 ~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 82 ET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred Hc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 74 4443223233332211 1 456788999998876543
No 93
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=45.53 E-value=36 Score=30.11 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=43.1
Q ss_pred CCCCCcccCcceeeccc---cC-C---ChHHHHHHHHH----HHHcCCCEEeCCC--Cc-C--CHHHHHHHHH---HHHh
Q 044053 19 SSSGHLNMPVIGLGCAV---DK-S---DTDALKLAVLE----AIKLGYRHFDTAA--MY-G--TEKALGEAIA---EALR 79 (327)
Q Consensus 19 ~t~g~~~vs~lglG~~~---~~-~---~~~~~~~~l~~----A~~~Gi~~~DTA~--~Y-g--sE~~lG~~L~---~~~~ 79 (327)
.| | +.+|.++|.+-+ || . .++++.+++.. |.+.|||.|--|. .| . +++...+++. ....
T Consensus 65 et-g-v~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 65 ET-G-VRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVE 142 (287)
T ss_pred Hh-C-CCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHH
Confidence 45 8 999999998864 44 1 23445555544 5588999998873 33 2 5555555543 2211
Q ss_pred cCCCCCCCcEEEEecc
Q 044053 80 LGLVSSREQLFITSKL 95 (327)
Q Consensus 80 ~g~~~~R~~v~I~tK~ 95 (327)
-- .+.+|.++.-+
T Consensus 143 lA---~~aqV~lAvEi 155 (287)
T COG3623 143 LA---ARAQVMLAVEI 155 (287)
T ss_pred HH---HhhccEEEeee
Confidence 11 46667777665
No 94
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=44.83 E-value=47 Score=30.08 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCC
Q 044053 175 FSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
|+...+.++.+..+++..++-..||+... ++-++|++.|+.+++--|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 34455666677778888777778866654 899999999999999989854
No 95
>PRK07328 histidinol-phosphatase; Provisional
Probab=44.54 E-value=2.3e+02 Score=25.28 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHcCCccEEEec
Q 044053 105 VIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVW----EAMEESQMLGLTKSIGLS 173 (327)
Q Consensus 105 i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~~Gkir~iGvS 173 (327)
....+++.|++...||+ +.-+|+.+...-.... ..+.+...+.++++ +.+.++.+.|.+.-+|=-
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~---~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPD---FVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChh---HHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 34556666777777888 8888986432110000 00001112233444 357778888988877743
No 96
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=44.21 E-value=3e+02 Score=26.49 Aligned_cols=143 Identities=10% Similarity=0.097 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCC
Q 044053 65 GTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKE 144 (327)
Q Consensus 65 gsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~ 144 (327)
|+++.+-++|.+..+.. +.+-++|.|-.-.. .--+.+...+++.-++++ +.++.+|.|......
T Consensus 68 G~~~kL~~~I~~~~~~~---~p~~I~v~~tC~~~-iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~--------- 131 (430)
T cd01981 68 GSQEKVVENITRKDKEE---KPDLIVLTPTCTSS-ILQEDLQNFVRAAGLSSK---SPVLPLDVNHYRVNE--------- 131 (430)
T ss_pred CcHHHHHHHHHHHHHhc---CCCEEEEeCCccHH-HHhhCHHHHHHHhhhccC---CCeEEecCCCccchH---------
Confidence 35455556666553322 33456666664221 112334433333333433 678889988653210
Q ss_pred CCCCCCHHHHHHHHH-HHH-------------HcCCccEEEeccc------cHHHHHHHHHhCCCCCeeee---------
Q 044053 145 DLLPMDYRGVWEAME-ESQ-------------MLGLTKSIGLSNF------SCKKIETILTFATIPPSINQ--------- 195 (327)
Q Consensus 145 ~~~~~~~~~~~~~l~-~l~-------------~~Gkir~iGvS~~------~~~~l~~~~~~~~~~~~~~q--------- 195 (327)
......+++++- .+. .+.+|.-||.++. +...+.++++..++.+.++-
T Consensus 132 ---~~g~~~al~~l~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i 208 (430)
T cd01981 132 ---LQAADETFEQLVRFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDL 208 (430)
T ss_pred ---HHHHHHHHHHHHHHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHH
Confidence 001222222221 111 2356888888753 35678888887776543321
Q ss_pred -----cccCccccc---HHHHHHH-HHcCCEEEEecCCCC
Q 044053 196 -----VEMHPVWQQ---RKLIEFC-KAKGIIVTAYSPLGA 226 (327)
Q Consensus 196 -----~~~~~~~~~---~~ll~~~-~~~gi~v~a~~pl~~ 226 (327)
..+|+.... ..+-++. ++.||..+...|++-
T Consensus 209 ~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~~~~~p~G~ 248 (430)
T cd01981 209 NELPKAWFNIVPYREYGLSAALYLEEEFGMPSVKITPIGV 248 (430)
T ss_pred HhhhhCeEEEEecHHHHHHHHHHHHHHhCCCeEeccCCCh
Confidence 112222111 1223333 456999988777753
No 97
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=43.92 E-value=87 Score=27.00 Aligned_cols=69 Identities=7% Similarity=0.040 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCC
Q 044053 152 RGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 152 ~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 224 (327)
+.+...++.+++..-=--|.+-++.++.++.+++. +.++..+...+.. ..++++.++++|..++++..-
T Consensus 57 ~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 57 ERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 34555566666511112577888999999999998 6665555444433 578999999999999998665
No 98
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=43.69 E-value=1.5e+02 Score=23.98 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=36.8
Q ss_pred CccEEEeccccHHH----HHHHHHhCCCCCeeeecccCccccc----------HHHHHHHHHcCCEEEEecCC
Q 044053 166 LTKSIGLSNFSCKK----IETILTFATIPPSINQVEMHPVWQQ----------RKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 166 kir~iGvS~~~~~~----l~~~~~~~~~~~~~~q~~~~~~~~~----------~~ll~~~~~~gi~v~a~~pl 224 (327)
.+...|++..+... +.+.+...+.+.+++++--|-..+. .++++.+++++..++..++.
T Consensus 38 ~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~ 110 (177)
T cd01822 38 TVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQ 110 (177)
T ss_pred EEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 46677888776443 3344443344556666666643221 56888899989988876543
No 99
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=43.62 E-value=1e+02 Score=23.21 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEe
Q 044053 155 WEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 155 ~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~ 221 (327)
-.+|...++.|++. +| ..+..+.++......+++--..+. .....+..+|+.++|+++.|
T Consensus 5 ~~~l~~a~ragkl~-~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 5 NRELRVAVDTGKVI-LG-----SKRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHcCCEE-Ec-----HHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 36678888888865 23 445666666666665565544433 33377899999999998776
No 100
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=43.50 E-value=1.4e+02 Score=28.98 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCC-ccEEEeccccHHHHHHHHHhCC-----CCCeeeecccCcccccHHHHHHHHHcCCEEEEecCC
Q 044053 154 VWEAMEESQMLGL-TKSIGLSNFSCKKIETILTFAT-----IPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 154 ~~~~l~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~-----~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 224 (327)
+...++.++++|. |+++.+.+-....++++.+..+ +-++.+-.+...+.+-+++...|++.||.|..=..-
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQ 220 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQ 220 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhh
Confidence 4455666777774 6777777544333333333222 111122222223333377777888887766554433
No 101
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=43.42 E-value=3.1e+02 Score=26.43 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=79.5
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCC
Q 044053 60 TAAMYGTEKALGEAIAEALRLGLVSSR-EQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVG 138 (327)
Q Consensus 60 TA~~YgsE~~lG~~L~~~~~~g~~~~R-~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~ 138 (327)
..-.||.|+.|-++|++..+.. +. +-++|.|-....-. -+.+..-+++.-++++ ++++.+|.|..... .
T Consensus 76 ~dvVfGg~~kL~~~I~~~~~~~---~p~~~I~V~tTC~~~iI-GdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~-s-- 145 (421)
T cd01976 76 KDIVFGGDKKLAKAIDEAYELF---PLNKGISVQSECPVGLI-GDDIEAVARKASKELG---IPVVPVRCEGFRGV-S-- 145 (421)
T ss_pred cceecCCHHHHHHHHHHHHHhC---CCccEEEEECCChHHHh-ccCHHHHHHHHHHhhC---CCEEEEeCCCccCC-c--
Confidence 3346788888889998765543 33 55778777543211 2445555555444554 67889998865321 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH-----HHcCCccEEEecccc--HHHHHHHHHhCCCCCeeeecc--------------
Q 044053 139 FPVPKEDLLPMDYRGVWEAMEES-----QMLGLTKSIGLSNFS--CKKIETILTFATIPPSINQVE-------------- 197 (327)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~l-----~~~Gkir~iGvS~~~--~~~l~~~~~~~~~~~~~~q~~-------------- 197 (327)
...-.....+.+++.|... +..++|.-||-.++. ..++.++++..++++...-..
T Consensus 146 ----~~~G~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~ 221 (421)
T cd01976 146 ----QSLGHHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAK 221 (421)
T ss_pred ----ccHHHHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCC
Confidence 0000000112223322221 113568888855543 567888888877654321111
Q ss_pred cCcccccH---HHHHHHH-HcCCEEEEecCCC
Q 044053 198 MHPVWQQR---KLIEFCK-AKGIIVTAYSPLG 225 (327)
Q Consensus 198 ~~~~~~~~---~ll~~~~-~~gi~v~a~~pl~ 225 (327)
+|+..... .+-++.+ +.||.++...|++
T Consensus 222 lniv~~~~~~~~~a~~Le~~fGiP~~~~~p~G 253 (421)
T cd01976 222 LNLIHCYRSMNYIARMMEEKYGIPWMEYNFFG 253 (421)
T ss_pred EEEEECcHHHHHHHHHHHHHhCCcEEecccCC
Confidence 11211111 2333443 5799999887764
No 102
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=43.35 E-value=36 Score=22.54 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=19.7
Q ss_pred cCeeecCCCCCCcccCcceeeccccC
Q 044053 12 VPKLKLSSSSGHLNMPVIGLGCAVDK 37 (327)
Q Consensus 12 m~~~~Lg~t~g~~~vs~lglG~~~~~ 37 (327)
...+.|+.| | ++||.+-+|++.-|
T Consensus 15 s~~~~l~dt-g-lrvpv~KmGtgweG 38 (61)
T PF15221_consen 15 SLGRALRDT-G-LRVPVIKMGTGWEG 38 (61)
T ss_pred ccccccccc-c-cCCceeeecchHHH
Confidence 346789999 9 99999999988733
No 103
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=42.89 E-value=1.8e+02 Score=27.49 Aligned_cols=143 Identities=20% Similarity=0.179 Sum_probs=76.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCC
Q 044053 64 YGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPK 143 (327)
Q Consensus 64 YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~ 143 (327)
||.|+.+-+++++..+.. +.+-++|.|-.-+.-. -+.+..-+++--++.+. .++.+|.+.....
T Consensus 56 ~G~~~kL~~~i~~~~~~~---~P~~i~v~~sC~~~iI-GdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~--------- 119 (398)
T PF00148_consen 56 FGGEEKLREAIKEIAEKY---KPKAIFVVTSCVPEII-GDDIEAVARELQEEYGI---PVIPVHTPGFSGS--------- 119 (398)
T ss_dssp HTSHHHHHHHHHHHHHHH---STSEEEEEE-HHHHHT-TTTHHHHHHHHHHHHSS---EEEEEE--TTSSS---------
T ss_pred hcchhhHHHHHHHHHhcC---CCcEEEEECCCCHHHh-CCCHHHHHHHhhcccCC---cEEEEECCCccCC---------
Confidence 567777778887765543 4577788887532211 14455555555555553 8999998765211
Q ss_pred CCCCCCCHHHHHHHHHHHH-H------cCCccEEEecccc---HHHHHHHHHhCCCCCeeeecc--------------cC
Q 044053 144 EDLLPMDYRGVWEAMEESQ-M------LGLTKSIGLSNFS---CKKIETILTFATIPPSINQVE--------------MH 199 (327)
Q Consensus 144 ~~~~~~~~~~~~~~l~~l~-~------~Gkir~iGvS~~~---~~~l~~~~~~~~~~~~~~q~~--------------~~ 199 (327)
.....+.++.+|-+.. + .+.|.-||.++.. ..++.++++..++.....-.. +|
T Consensus 120 ---~~~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~ln 196 (398)
T PF00148_consen 120 ---YSQGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALN 196 (398)
T ss_dssp ---HHHHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEE
T ss_pred ---ccchHHHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEE
Confidence 0112455555554443 2 3567788998765 456777787776532221101 22
Q ss_pred ccccc---HHHHHHHHH-cCCEEEE-ecCCC
Q 044053 200 PVWQQ---RKLIEFCKA-KGIIVTA-YSPLG 225 (327)
Q Consensus 200 ~~~~~---~~ll~~~~~-~gi~v~a-~~pl~ 225 (327)
+.... ..+.++.++ .|+.++. -.|++
T Consensus 197 iv~~~~~~~~~a~~L~e~~giP~~~~~~p~G 227 (398)
T PF00148_consen 197 IVLCPEGGPYAAEWLEERFGIPYLYFPSPYG 227 (398)
T ss_dssp EESSCCHHHHHHHHHHHHHT-EEEEEC-SBS
T ss_pred EEeccchhhHHHHHHHHHhCCCeeecccccc
Confidence 22222 225555555 4999998 45553
No 104
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=42.64 E-value=1.5e+02 Score=23.06 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEe
Q 044053 151 YRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 151 ~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~ 221 (327)
...++..|..+++.|++. . ...+..++++......+++--..++-+-...+..+|+..+|+++-.
T Consensus 11 ~~ki~~lL~la~ragkl~-~-----G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~ 75 (117)
T TIGR03677 11 ANKALEAVEKARETGKIK-K-----GTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV 75 (117)
T ss_pred HHHHHHHHHHHHHcCCEe-E-----cHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 356788888999999864 3 3567777777777777777666666544477889999999997553
No 105
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=42.18 E-value=1.2e+02 Score=26.17 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=46.2
Q ss_pred HHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEec-cccHHHHHHHHHhCCCCC
Q 044053 113 LSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLS-NFSCKKIETILTFATIPP 191 (327)
Q Consensus 113 L~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~ 191 (327)
...+|.||+=+.+...-.+ ..+.+.+ +.+.+.. .+.++.+||. |-+++.+.++++..+ +
T Consensus 17 ~~~~GaD~iGfIf~~~SpR----------------~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~--~ 76 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKR----------------HQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTS--I 76 (207)
T ss_pred HHHcCCCEEEEecCCCCcc----------------cCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCC--C
Confidence 4558999999874332111 1223333 3333322 3568899996 777899999888664 5
Q ss_pred eeeecccCcccccHHHHHHHHH
Q 044053 192 SINQVEMHPVWQQRKLIEFCKA 213 (327)
Q Consensus 192 ~~~q~~~~~~~~~~~ll~~~~~ 213 (327)
+++|++-.- ..+.+...++
T Consensus 77 d~vQLHG~e---~~~~~~~l~~ 95 (207)
T PRK13958 77 NTIQLHGTE---SIDFIQEIKK 95 (207)
T ss_pred CEEEECCCC---CHHHHHHHhh
Confidence 688887532 2444444443
No 106
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.34 E-value=3.5e+02 Score=26.44 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCCEEe--------CCCCcC-------CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHH
Q 044053 42 ALKLAVLEAIKLGYRHFD--------TAAMYG-------TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVI 106 (327)
Q Consensus 42 ~~~~~l~~A~~~Gi~~~D--------TA~~Yg-------sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~ 106 (327)
...+++++|+++|--=+- |.+.|. .+++.+.++.-. . .+..|.-+|.. .-....+.
T Consensus 183 aMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va---~---ag~~iLqst~d---~~egaa~L 253 (579)
T COG3653 183 AMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVA---R---AGGRILQSTHD---RDEGAAAL 253 (579)
T ss_pred HHHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHH---H---hcCceeEeecc---ccchHHHH
Confidence 467889999999866565 677775 366666665432 1 34445544442 12245666
Q ss_pred HHHHHHHHHhC-CCceeEEEeecCC
Q 044053 107 PALKKSLSALQ-MEYLDLYLVHLPI 130 (327)
Q Consensus 107 ~~le~SL~rL~-~d~iDl~~lH~p~ 130 (327)
+.++++-++-+ .-.+-+.+.|.-+
T Consensus 254 ~~l~~a~ri~~R~~~vr~v~s~~a~ 278 (579)
T COG3653 254 EALLEASRIGNRRKGVRMVMSHSAD 278 (579)
T ss_pred HHHHHHHHhcCcccCceEEEecccc
Confidence 67777766663 3457888888654
No 107
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=40.58 E-value=1.3e+02 Score=23.45 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEe
Q 044053 151 YRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 151 ~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~ 221 (327)
.+.++..+....+.|+|. +...+..++++......+++--..+|..--..+-..|+++||.++-.
T Consensus 12 ~~k~l~~l~~a~~~~ki~------~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V 76 (116)
T COG1358 12 EQKALSLLGKASRAGKLK------KGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYV 76 (116)
T ss_pred HHHHHHHHHHHHhcCCch------hhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 566788888999999776 45677788888777666676555555444466888999999998754
No 108
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=39.90 E-value=1.2e+02 Score=31.16 Aligned_cols=107 Identities=10% Similarity=0.060 Sum_probs=68.7
Q ss_pred cCCccEEEeccccHHHHHHHHHhCC--CC--CeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccCh
Q 044053 164 LGLTKSIGLSNFSCKKIETILTFAT--IP--PSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLEN 239 (327)
Q Consensus 164 ~Gkir~iGvS~~~~~~l~~~~~~~~--~~--~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~ 239 (327)
..++-.+-=++.+.+.+.++.+... ++ ...+-+-+--..|+..+.++|++-++-++.-++= ....
T Consensus 153 ~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~-----------SsNt 221 (647)
T PRK00087 153 DKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKN-----------SSNT 221 (647)
T ss_pred CCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCC-----------CccH
Confidence 4555555556666666665554332 11 1122222222334577899999888888763222 2235
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhcC-CEEeecCCCHHHHHHh
Q 044053 240 EALKEIAKAHGK------TVAQVSLRWIVEQG-ATVVVKSLNLERMKQN 281 (327)
Q Consensus 240 ~~l~~ia~~~~~------s~aq~al~w~l~~~-~~vi~g~~~~~~l~en 281 (327)
.+|.++|++.|. ++.++.-.|.-... +.+..|+|+|+.+-+.
T Consensus 222 ~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 222 TKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 789999999873 78888889987766 7788999999866544
No 109
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=39.64 E-value=2.2e+02 Score=27.31 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeeecccCcc---cccHHHHHHHHHcCCEEEEecCC
Q 044053 155 WEAMEESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 155 ~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~~pl 224 (327)
++.+.+|++.-.+. ..|=|.++...+.++++...+ +++|+...-. ..-.++..+|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~--dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLI--DYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCC--CEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 57788888887666 667777889999999886543 4777665543 23368899999999999886553
No 110
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=39.54 E-value=2.8e+02 Score=24.71 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCceeEE--------EeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHcCCccEEEec---
Q 044053 106 IPALKKSLSALQMEYLDLY--------LVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEES-QMLGLTKSIGLS--- 173 (327)
Q Consensus 106 ~~~le~SL~rL~~d~iDl~--------~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~Gkir~iGvS--- 173 (327)
+..+-+.|.++|+++|++- ..++-.. ....++.++.+ +..+.++...++
T Consensus 24 k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-------------------~~~~~e~i~~~~~~~~~~~~~~~~~~~ 84 (263)
T cd07943 24 VRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-------------------AHTDEEYLEAAAEALKQAKLGVLLLPG 84 (263)
T ss_pred HHHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-------------------CCChHHHHHHHHHhccCCEEEEEecCC
Q ss_pred cccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEe
Q 044053 174 NFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~ 221 (327)
......++.+.+ +.++..-+-...|....-.+.+++++++|+.+...
T Consensus 85 ~~~~~~i~~a~~-~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 85 IGTVDDLKMAAD-LGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred ccCHHHHHHHHH-cCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
No 111
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=39.30 E-value=2.4e+02 Score=24.74 Aligned_cols=84 Identities=5% Similarity=0.189 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcC---------CCHHHHHHHHHHhcC-CEEeecCCC
Q 044053 205 RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHG---------KTVAQVSLRWIVEQG-ATVVVKSLN 274 (327)
Q Consensus 205 ~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~---------~s~aq~al~w~l~~~-~~vi~g~~~ 274 (327)
.++.+..++.|+..++++-+.. ......+..+|++.| .++.++ +.++ ..| .++|+++..
T Consensus 75 ~~l~~~l~~~gv~~vv~GdI~s---------~~qr~~~e~vc~~~gl~~~~PLW~~d~~~l-~e~i-~~Gf~aiIv~v~~ 143 (222)
T TIGR00289 75 EDLAGQLGELDVEALCIGAIES---------NYQKSRIDKVCRELGLKSIAPLWHADPEKL-MYEV-AEKFEVIIVSVSA 143 (222)
T ss_pred HHHHHHHHHcCCCEEEECcccc---------HHHHHHHHHHHHHcCCEEeccccCCCHHHH-HHHH-HcCCeEEEEEEcc
Confidence 4566667777877777655543 123456777777765 456555 4654 778 555655543
Q ss_pred HHHHHHhhcccccccCHHHHHHHhcCCC
Q 044053 275 LERMKQNLGIFDWKLTDDDYDKINQIPQ 302 (327)
Q Consensus 275 ~~~l~enl~a~~~~L~~~~~~~l~~~~~ 302 (327)
. .|.+. -+...|+++.++.|.++.+
T Consensus 144 ~-gL~~~--~LGr~id~~~~~~L~~l~~ 168 (222)
T TIGR00289 144 M-GLDES--WLGRRIDKECIDDLKRLNE 168 (222)
T ss_pred C-CCChH--HcCCccCHHHHHHHHHHHh
Confidence 2 34332 2345788888888876544
No 112
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=38.85 E-value=1.8e+02 Score=25.25 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC----CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHH
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTAAMYG----TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSL 113 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL 113 (327)
.++++...+.+.+.++|..|+=|+..|+ +..-+ +.+++. -+++ +-.|....-.+.+.+.+-++.--
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv-~~m~~~-------v~~~--v~IKaaGGirt~~~a~~~i~aGa 198 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDV-RLMRNT-------VGDT--IGVKASGGVRTAEDAIAMIEAGA 198 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHH-HHHHHH-------hccC--CeEEEeCCCCCHHHHHHHHHHhh
Confidence 3557778899999999999999998886 22211 233433 1222 33444333336788999999999
Q ss_pred HHhCCCc
Q 044053 114 SALQMEY 120 (327)
Q Consensus 114 ~rL~~d~ 120 (327)
.|+|++.
T Consensus 199 ~riGts~ 205 (211)
T TIGR00126 199 SRIGASA 205 (211)
T ss_pred HHhCcch
Confidence 9999865
No 113
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=38.65 E-value=62 Score=29.17 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecccc-----HHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEe
Q 044053 151 YRGVWEAMEESQMLGLTKSIGLSNFS-----CKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 151 ~~~~~~~l~~l~~~Gkir~iGvS~~~-----~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~ 221 (327)
....-..|++||+.| +-||.||. --++++.++..+.. +.++-+++..|+++|+-.++|
T Consensus 94 ~~~~~~fl~~lk~~G---f~GV~NfPTvgliDG~fR~~LEe~Gmg----------y~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 94 FRDMDRFLDELKELG---FSGVQNFPTVGLIDGQFRQNLEETGMG----------YDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp T--HHHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHHTT------------HHHHHHHHHHHHHTT-EE--E
T ss_pred CCcHHHHHHHHHHhC---CceEEECCcceeeccHHHHHHHhcCCC----------HHHHHHHHHHHHHCCCeeeee
Confidence 345567888899888 78999996 23456666665432 223467888888888887776
No 114
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=38.54 E-value=2.6e+02 Score=24.18 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHH
Q 044053 104 HVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETI 183 (327)
Q Consensus 104 ~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~ 183 (327)
..+..+-+.|.++|+++|++- .|... ....+.++.+.+.... .+-.+++......++..
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~~----------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~ 72 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFAS----------------EDDFEQVRRLREALPN--ARLQALCRANEEDIERA 72 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTSS----------------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEc---ccccC----------------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHH
Confidence 344455556999999999988 33110 1123344444444444 55556666666666664
Q ss_pred HH---hCCCCCeeeecccCccc--------------ccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHH
Q 044053 184 LT---FATIPPSINQVEMHPVW--------------QQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIA 246 (327)
Q Consensus 184 ~~---~~~~~~~~~q~~~~~~~--------------~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia 246 (327)
++ .++.+...+-+..|... .-.+.+.++++.|+.+.. ++-.. + ....+.+.+++
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~-~~~~~-~-------~~~~~~~~~~~ 143 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAF-GCEDA-S-------RTDPEELLELA 143 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEE-EETTT-G-------GSSHHHHHHHH
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEe-Ccccc-c-------cccHHHHHHHH
Confidence 43 34555444444555521 115689999999999933 33221 1 12334555554
Q ss_pred HHcCCCHHHHHHHHHHhcC--CEEe---ecCCCHHHHHHhhcccc
Q 044053 247 KAHGKTVAQVSLRWIVEQG--ATVV---VKSLNLERMKQNLGIFD 286 (327)
Q Consensus 247 ~~~~~s~aq~al~w~l~~~--~~vi---~g~~~~~~l~enl~a~~ 286 (327)
++ + ..-| ...| .|.-+|.++.+-++.+.
T Consensus 144 ~~--------~----~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 144 EA--------L----AEAGADIIYLADTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp HH--------H----HHHT-SEEEEEETTS-S-HHHHHHHHHHHH
T ss_pred HH--------H----HHcCCeEEEeeCccCCcCHHHHHHHHHHHH
Confidence 43 1 1114 2333 46778888887776554
No 115
>PRK06740 histidinol-phosphatase; Validated
Probab=38.23 E-value=3.4e+02 Score=25.31 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHcCCccEEE
Q 044053 107 PALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMD----YRGVWEAMEESQMLGLTKSIG 171 (327)
Q Consensus 107 ~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~l~~~Gkir~iG 171 (327)
..++..|+....||+ +.-+|..+...-.. +...+.+...+ ...-++.+.++.+.|++..||
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~---~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIg 220 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDN---PDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIA 220 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCC---ccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 456667777788888 88899864221000 00000010111 234567788888999988887
No 116
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.07 E-value=3.5e+02 Score=25.44 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhc-CCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC-CCceeEEEeecCCCCCCCCCCCCCCC
Q 044053 66 TEKALGEAIAEALRL-GLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQ-MEYLDLYLVHLPISSKPGEVGFPVPK 143 (327)
Q Consensus 66 sE~~lG~~L~~~~~~-g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~-~d~iDl~~lH~p~~~~~~~~~~~~~~ 143 (327)
+-..+-++++..... |+ ....+.|+|-. -...+++-.+.-+++|+ .+....+-||.++........ |..
T Consensus 163 n~~~v~~~i~~l~~~~~i--~~r~itvST~G-----~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~-p~~- 233 (345)
T PRK14457 163 NIDEVLAAIRCLNQDLGI--GQRRITVSTVG-----VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLI-PSA- 233 (345)
T ss_pred CHHHHHHHHHHHhcccCC--ccCceEEECCC-----chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhc-CCc-
Confidence 444455666654211 33 34467777732 12334444444444443 344578899998764321110 110
Q ss_pred CCCCCCCHHHHHHHHHH-HHHcCC---ccEEEeccc--cHHHHHHHHHhCC-CCCeeeecccCccccc----------HH
Q 044053 144 EDLLPMDYRGVWEAMEE-SQMLGL---TKSIGLSNF--SCKKIETILTFAT-IPPSINQVEMHPVWQQ----------RK 206 (327)
Q Consensus 144 ~~~~~~~~~~~~~~l~~-l~~~Gk---ir~iGvS~~--~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~ 206 (327)
....++++++++.+ +.+.|+ ++++=+.++ +.++++++.+... ++..++=++||++... ..
T Consensus 234 ---~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~ 310 (345)
T PRK14457 234 ---KNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQA 310 (345)
T ss_pred ---cCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHH
Confidence 12347788877766 566664 666666544 4677777666543 4456788889886421 34
Q ss_pred HHHHHHHcCCEEEEecCCCC
Q 044053 207 LIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 207 ll~~~~~~gi~v~a~~pl~~ 226 (327)
+.+..+++||.+......|.
T Consensus 311 f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 311 FQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHHHCCCeEEEeCCCCC
Confidence 56667888999988877754
No 117
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=37.91 E-value=1.3e+02 Score=21.95 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEec
Q 044053 154 VWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 154 ~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~ 222 (327)
+...|...++.|++. +| ..+..+.++......++.--..++.....-+..+|++++|.++-..
T Consensus 3 i~~~l~~a~~~~~lv-~G-----~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 3 IYKLLKLARKAGRLV-KG-----IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHHHSEEE-ES-----HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred HHHHHHHHHhcCCEE-Ec-----hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 456677777787743 44 4567777777776666666666655443447789999999997543
No 118
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=37.88 E-value=4e+02 Score=26.12 Aligned_cols=146 Identities=16% Similarity=0.066 Sum_probs=78.6
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCC
Q 044053 62 AMYGTEKALGEAIAEALRLGLVSSR-EQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFP 140 (327)
Q Consensus 62 ~~YgsE~~lG~~L~~~~~~g~~~~R-~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~ 140 (327)
-.||.|+-|-++|++..+.- +. +-++|.|-....-. -+.+..-+++.-++++ +.++.+|.|..... .
T Consensus 111 iVfGGe~kL~~aI~e~~~~~---~P~~~I~V~tTC~~~lI-GDDi~av~~~~~~~~~---~pVi~v~t~gf~G~-s---- 178 (466)
T TIGR01282 111 IVFGGDKKLKKAIDEIEELF---PLNKGISIQSECPVGLI-GDDIEAVAKKASKELG---KPVVPVRCEGFRGV-S---- 178 (466)
T ss_pred eecCcHHHHHHHHHHHHHhC---CcccEEEEeCCChHHHh-ccCHHHHHHHHhhhcC---CcEEEEeCCCcCCc-h----
Confidence 45777888888888765432 33 56788877643211 1344444444444443 68899998865310 0
Q ss_pred CCCCCCCCCCHHHHHHHHHH-HH----------HcCCccEEEeccc--cHHHHHHHHHhCCCCCeeeecc----------
Q 044053 141 VPKEDLLPMDYRGVWEAMEE-SQ----------MLGLTKSIGLSNF--SCKKIETILTFATIPPSINQVE---------- 197 (327)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~-l~----------~~Gkir~iGvS~~--~~~~l~~~~~~~~~~~~~~q~~---------- 197 (327)
.....+.+.+++-+ +. ..++|.-||-.|+ +.+++.++++..++++...-..
T Consensus 179 ------~~~G~~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~ 252 (466)
T TIGR01282 179 ------QSLGHHIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENA 252 (466)
T ss_pred ------hhHHHHHHHHHHHHHhhccccccccCCCCCeEEEEecCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhc
Confidence 00112223333222 22 1357888885554 3567888888877654322111
Q ss_pred ----cCcccccH---HHHHHHH-HcCCEEEEecCCC
Q 044053 198 ----MHPVWQQR---KLIEFCK-AKGIIVTAYSPLG 225 (327)
Q Consensus 198 ----~~~~~~~~---~ll~~~~-~~gi~v~a~~pl~ 225 (327)
+|+..... .+-++.+ +.||.++...|+|
T Consensus 253 ~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~~G 288 (466)
T TIGR01282 253 PKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFFG 288 (466)
T ss_pred ccCCEEEEEChHHHHHHHHHHHHHhCCceEeCCCCC
Confidence 12221111 2344444 4599999887654
No 119
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=37.78 E-value=3.5e+02 Score=25.33 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC---------------------CHHHHHHHHHHHHhcCCCCCCCcEEEEeccC
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTAAMYG---------------------TEKALGEAIAEALRLGLVSSREQLFITSKLW 96 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---------------------sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~ 96 (327)
.+.+.-.++.+.|-+.|+-+|-|--.+. ...+|-...+ ..+.+.++|-.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~---------~~kPiIlSTGm- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK---------KGKPIILSTGM- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh---------cCCCEEEEccc-
Confidence 5677788899999999999996654332 1222222211 23467777764
Q ss_pred CCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecccc
Q 044053 97 CQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS 176 (327)
Q Consensus 97 ~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~ 176 (327)
.+-+.+.++++...++=. .|+.+||+...+. .+.++. -+.+|..|++.= -.-||+|.|+
T Consensus 157 ---a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YP-------ap~ed~-------NL~~i~~l~~~F-n~~vGlSDHT 215 (347)
T COG2089 157 ---ATIEEIEEAVAILRENGN---PDIALLHCTSAYP-------APFEDV-------NLKAIPKLAEAF-NAIVGLSDHT 215 (347)
T ss_pred ---ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCC-------CCHHHh-------hHHHHHHHHHHh-CCccccccCc
Confidence 234677777776555433 3999999875542 222211 123344443332 3469999999
Q ss_pred HHHHHHHHHh
Q 044053 177 CKKIETILTF 186 (327)
Q Consensus 177 ~~~l~~~~~~ 186 (327)
...+.-+...
T Consensus 216 ~g~~a~l~Av 225 (347)
T COG2089 216 LGILAPLAAV 225 (347)
T ss_pred cchhHHHHHH
Confidence 7755544443
No 120
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=37.63 E-value=3.4e+02 Score=25.18 Aligned_cols=217 Identities=15% Similarity=0.083 Sum_probs=112.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCC-----HH----HHHHHHHHHHhc-CCCCCCCcE-----EEEeccCC------
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYGT-----EK----ALGEAIAEALRL-GLVSSREQL-----FITSKLWC------ 97 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~Ygs-----E~----~lG~~L~~~~~~-g~~~~R~~v-----~I~tK~~~------ 97 (327)
.++...++-+..+++|.+.+-|...+.+ |. ..-+..+.+.+- .. .|+.+ +|+--+++
T Consensus 51 ~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~--Are~~~~~~~~v~gsiGp~~A~l~ 128 (317)
T KOG1579|consen 51 NPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADL--ARERLGEETGYVAGSIGPYGATLA 128 (317)
T ss_pred ChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHH--HHHHhccccceeeeecccccceec
Confidence 3567778888889999999998865541 11 111111111000 00 23333 33333322
Q ss_pred ----------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc--C
Q 044053 98 ----------QNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQML--G 165 (327)
Q Consensus 98 ----------~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--G 165 (327)
...+.+.+.......|+.+.-.-||++.+.... ...++-.+++-+.+. .
T Consensus 129 ~g~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip-------------------~~~EA~a~l~~l~~~~~~ 189 (317)
T KOG1579|consen 129 DGSEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIP-------------------NVAEAKAALELLQELGPS 189 (317)
T ss_pred CCcccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecC-------------------CHHHHHHHHHHHHhcCCC
Confidence 123456788888888888876679999988652 134444444444443 2
Q ss_pred CccEEEecccc------HHHHHHHHHhCCC--CCeeeecccCccccc-HHHHHHH-HHcCCEEEEecCCCCCCccCCCCc
Q 044053 166 LTKSIGLSNFS------CKKIETILTFATI--PPSINQVEMHPVWQQ-RKLIEFC-KAKGIIVTAYSPLGAVGKIYGSNQ 235 (327)
Q Consensus 166 kir~iGvS~~~------~~~l~~~~~~~~~--~~~~~q~~~~~~~~~-~~ll~~~-~~~gi~v~a~~pl~~~G~l~~~~~ 235 (327)
+=-+|+++..+ ...+++++...+- .+..+=+++...... .-+.++. +-.++.+++| |.++ ........
T Consensus 190 ~p~~is~t~~d~g~l~~G~t~e~~~~~~~~~~~~~~IGvNC~~~~~~~~~~~~L~~~~~~~~llvY-PNsG-e~yd~~~g 267 (317)
T KOG1579|consen 190 KPFWISFTIKDEGRLRSGETGEEAAQLLKDGINLLGIGVNCVSPNFVEPLLKELMAKLTKIPLLVY-PNSG-EVYDNEKG 267 (317)
T ss_pred CcEEEEEEecCCCcccCCCcHHHHHHHhccCCceEEEEeccCCchhccHHHHHHhhccCCCeEEEe-cCCC-CCCccccC
Confidence 23356666543 2334555444332 245555555554443 2233333 5668999998 6653 33221111
Q ss_pred ccChHHHHHHHHHcCCCHHHHHHHHHHhcCCEEeecC--CCHHHHHHhhccc
Q 044053 236 VLENEALKEIAKAHGKTVAQVSLRWIVEQGATVVVKS--LNLERMKQNLGIF 285 (327)
Q Consensus 236 ~~~~~~l~~ia~~~~~s~aq~al~w~l~~~~~vi~g~--~~~~~l~enl~a~ 285 (327)
.+... ..+..+-+.-.+...+.|+-+|-|+ ++|.|+++--++.
T Consensus 268 ~~~~~-------~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~aI~e~v 312 (317)
T KOG1579|consen 268 GWIPT-------PFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRAIAEAV 312 (317)
T ss_pred cccCC-------CcccchHHHHHHHHHhcccceeCcccCCChHHHHHHHHHh
Confidence 00000 0122233333344445577778776 6889988766544
No 121
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=37.10 E-value=35 Score=27.27 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCEEEEecCCCC
Q 044053 205 RKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 205 ~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
.++++.|+++||.|++|-.+..
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeec
Confidence 7899999999999999987743
No 122
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.91 E-value=96 Score=26.75 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCccEEEeccc-cHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEE
Q 044053 154 VWEAMEESQMLGLTKSIGLSNF-SCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTA 220 (327)
Q Consensus 154 ~~~~l~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a 220 (327)
..+.+++++++..=-.||+.+. +.++++++++..- .+. .+|. -+.+++++|+++||.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~Fi-----vSP~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFI-----VSPG-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEE-----ECCC-CCHHHHHHHHHcCCCEeC
Confidence 4566667766543355888775 5888888887542 222 2232 247899999999999884
No 123
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=36.84 E-value=1.7e+02 Score=24.41 Aligned_cols=94 Identities=10% Similarity=-0.073 Sum_probs=52.5
Q ss_pred HHHcCCccEEEeccccHHHH----HHHHHhCCCCCeeeecccCccccc----------HHHHHHHHHcCCEEEEecCCCC
Q 044053 161 SQMLGLTKSIGLSNFSCKKI----ETILTFATIPPSINQVEMHPVWQQ----------RKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 161 l~~~Gkir~iGvS~~~~~~l----~~~~~~~~~~~~~~q~~~~~~~~~----------~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
+.....|..-|++..+...+ .+.+.....+.+++++--|-..+. +.+++.++++|+.++...+...
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P 119 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLP 119 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 34456688899999886543 333333344566777777765331 5688999988877665432111
Q ss_pred CCccCCCCcccChHHHHHHHHHcCCCHHH
Q 044053 227 VGKIYGSNQVLENEALKEIAKAHGKTVAQ 255 (327)
Q Consensus 227 ~G~l~~~~~~~~~~~l~~ia~~~~~s~aq 255 (327)
............+.++++|+++++....
T Consensus 120 -~~~~~~~~~~~~~~~~~~a~~~~v~~id 147 (191)
T PRK10528 120 -ANYGRRYNEAFSAIYPKLAKEFDIPLLP 147 (191)
T ss_pred -CcccHHHHHHHHHHHHHHHHHhCCCccH
Confidence 1110000001124466778887766544
No 124
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.83 E-value=62 Score=25.19 Aligned_cols=40 Identities=15% Similarity=-0.050 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHHHHHHHH
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTAAMYG-TEKALGEAIAEA 77 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~lG~~L~~~ 77 (327)
.+.+.-..++...++.|.+.-+.|..|| +...|..|++++
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3556667788889999999999999999 999999999986
No 125
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=36.35 E-value=3.7e+02 Score=25.31 Aligned_cols=92 Identities=13% Similarity=0.216 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CccEEEeccccHHHHHHHH
Q 044053 106 IPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLG-LTKSIGLSNFSCKKIETIL 184 (327)
Q Consensus 106 ~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-kir~iGvS~~~~~~l~~~~ 184 (327)
+..+-+.|.++|+++|++- +|.. -+.-++.++.+.+.+ ..+..+++......++.+.
T Consensus 25 k~~ia~~L~~~Gv~~IEvG---~p~~-------------------~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~ 82 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVG---IPAM-------------------GEEERAVIRAIVALGLPARLMAWCRARDADIEAAA 82 (365)
T ss_pred HHHHHHHHHHcCCCEEEEe---CCCC-------------------CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHH
Confidence 4455566999999999984 3321 123356677777664 3777777777788888777
Q ss_pred HhCCCCCeeeecccCccccc--------------HHHHHHHHHcCCEEEE
Q 044053 185 TFATIPPSINQVEMHPVWQQ--------------RKLIEFCKAKGIIVTA 220 (327)
Q Consensus 185 ~~~~~~~~~~q~~~~~~~~~--------------~~ll~~~~~~gi~v~a 220 (327)
+. +++...+-+..|..+.. .+.+++++++|+.+..
T Consensus 83 ~~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 83 RC-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred cC-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 64 33322232333332111 3678899999987653
No 126
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=36.27 E-value=1.7e+02 Score=22.90 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEe
Q 044053 152 RGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 152 ~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~ 221 (327)
..++..|.-+++.|++. ....+..++++......+++--..++..-...+..+|+++||+++-.
T Consensus 16 ~ki~~lL~la~ragklv------~G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~ 79 (122)
T PRK04175 16 EKALEAVEKARDTGKIK------KGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV 79 (122)
T ss_pred HHHHHHHHHHHHcCCEe------EcHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE
Confidence 45778888899999875 33567777777776676777666666433367888999999997543
No 127
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=35.82 E-value=1.9e+02 Score=21.72 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=55.4
Q ss_pred HHHHHHHc-CCccEEEeccccHHHHHHHHHhCCCC-------------CeeeecccCcccccHHHHHHHHHcCCEEEEec
Q 044053 157 AMEESQML-GLTKSIGLSNFSCKKIETILTFATIP-------------PSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 157 ~l~~l~~~-Gkir~iGvS~~~~~~l~~~~~~~~~~-------------~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~ 222 (327)
.+..+.+. ..++-+|+++-++...+.+.+..+++ ++++-+ ..+-....+++..|-++|+.|+.=+
T Consensus 15 ~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I-~tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 15 HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVII-ATPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEE-ESSGGGHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEE-ecCCcchHHHHHHHHHcCCEEEEEc
Confidence 34556666 66788888888877766654443322 111111 1122234788999999999999999
Q ss_pred CCCCCCccCCCCcccChHHHHHHHHHcCC
Q 044053 223 PLGAVGKIYGSNQVLENEALKEIAKAHGK 251 (327)
Q Consensus 223 pl~~~G~l~~~~~~~~~~~l~~ia~~~~~ 251 (327)
|++. +..+..++.+.++++|+
T Consensus 94 P~~~--------~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 94 PLAL--------TLEEAEELVEAAKEKGV 114 (120)
T ss_dssp SSSS--------SHHHHHHHHHHHHHHTS
T ss_pred CCcC--------CHHHHHHHHHHHHHhCC
Confidence 9975 23345677778887764
No 128
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=35.62 E-value=3.9e+02 Score=25.33 Aligned_cols=112 Identities=19% Similarity=0.093 Sum_probs=65.6
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCC
Q 044053 62 AMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPV 141 (327)
Q Consensus 62 ~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~ 141 (327)
-.||.|..|-++|++..+.- +.+=++|.|-.-..- --+.+..-+++.-++.+ +.++.+|.|......
T Consensus 67 ~V~Gg~~~L~~~i~~~~~~~---~P~~i~v~~tC~~~~-iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~------ 133 (406)
T cd01967 67 IVFGGEKKLKKAIKEAYERF---PPKAIFVYSTCPTGL-IGDDIEAVAKEASKELG---IPVIPVNCEGFRGVS------ 133 (406)
T ss_pred eeeCcHHHHHHHHHHHHHhC---CCCEEEEECCCchhh-hccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCc------
Confidence 45788888888888765432 334466777653321 12445544444444444 789999988653210
Q ss_pred CCCCCCCCCHHHHHHHHHHHH---------HcCCccEEEecccc--HHHHHHHHHhCCCCC
Q 044053 142 PKEDLLPMDYRGVWEAMEESQ---------MLGLTKSIGLSNFS--CKKIETILTFATIPP 191 (327)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~l~---------~~Gkir~iGvS~~~--~~~l~~~~~~~~~~~ 191 (327)
.......++++|-+.. +.+.|.-||..++. ..++.++++..++.+
T Consensus 134 -----~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~ 189 (406)
T cd01967 134 -----QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRV 189 (406)
T ss_pred -----ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEE
Confidence 0122444555544432 34568888887653 477888888776543
No 129
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=35.42 E-value=1.8e+02 Score=27.66 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc--HHHHHHHHHcCCEEEEecCCCCCCccCC
Q 044053 155 WEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYG 232 (327)
Q Consensus 155 ~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~~G~l~~ 232 (327)
..++.+|.+.|.+.+|-.--...-.+..+...-...|. --|.+...+ +.+++.|+++||.|+.-+ |-+
T Consensus 12 ~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na-----Gg~-- 81 (362)
T PF07287_consen 12 PDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA-----GGL-- 81 (362)
T ss_pred HHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC-----CCC--
Confidence 46677888899999986543332222211111111111 123333332 678999999999998752 211
Q ss_pred CCcccChHHHHHHHHHcCCC
Q 044053 233 SNQVLENEALKEIAKAHGKT 252 (327)
Q Consensus 233 ~~~~~~~~~l~~ia~~~~~s 252 (327)
++.-..+.++++++++|.+
T Consensus 82 -np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 82 -NPAGCADIVREIARELGLS 100 (362)
T ss_pred -CHHHHHHHHHHHHHhcCCC
Confidence 1111346677777776653
No 130
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=35.41 E-value=1.1e+02 Score=26.38 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCccEEEeccc-cHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEE
Q 044053 153 GVWEAMEESQMLGLTKSIGLSNF-SCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTA 220 (327)
Q Consensus 153 ~~~~~l~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a 220 (327)
..++.+++++++..=-.||+.+. +.++++++++.. -++. .+|.. +.+++++|+++||.++.
T Consensus 45 ~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fi-----vsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 45 VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFI-----VSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEE-----ECCCC-CHHHHHHHHHcCCcEEC
Confidence 35566677766543356888775 588888888754 2332 22322 47999999999998875
No 131
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.01 E-value=40 Score=28.17 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcC-CccEEEecccc--HHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEE
Q 044053 150 DYRGVWEAMEESQMLG-LTKSIGLSNFS--CKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTA 220 (327)
Q Consensus 150 ~~~~~~~~l~~l~~~G-kir~iGvS~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a 220 (327)
+..+++++|..+++.| +|-.+|..|.. ...+.+++. + .+.+..|+-...-...+..+++.|+.++.
T Consensus 62 s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~---~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 62 SGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG---V--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp -HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT------EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred CHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC---C--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 4778999999998777 56666666654 455555553 2 35555555433336788899999999887
No 132
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.58 E-value=3.9e+02 Score=24.96 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeeecccCcc---cccHHHHHHHHHcCCEEEE
Q 044053 155 WEAMEESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTA 220 (327)
Q Consensus 155 ~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a 220 (327)
++.+.++++.--|. ..|=+.++...+..+++... ++++|+..+-. ..-.++..+|+.+|+.++.
T Consensus 226 ~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~--~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~ 293 (355)
T cd03321 226 YEGHARIASALRTPVQMGENWLGPEEMFKALSAGA--CDLVMPDLMKIGGVTGWLRASALAEQAGIPMSS 293 (355)
T ss_pred HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCC--CCeEecCHhhhCCHHHHHHHHHHHHHcCCeecc
Confidence 46667777664433 45666678888888887653 34666655443 1226788999999998753
No 133
>PRK09061 D-glutamate deacylase; Validated
Probab=34.22 E-value=4.8e+02 Score=25.89 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCCCEEeCCCCc--C-CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCC-ChhhHHHHHHHHHHHhC
Q 044053 42 ALKLAVLEAIKLGYRHFDTAAMY--G-TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNA-HRDHVIPALKKSLSALQ 117 (327)
Q Consensus 42 ~~~~~l~~A~~~Gi~~~DTA~~Y--g-sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~-~~~~i~~~le~SL~rL~ 117 (327)
+..++++.|++.|+..|=+...| + +...+-+.++.. .+-+..|..-...... ++.....++++.++.-+
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A-------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA-------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAA 242 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH-------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHH
Confidence 36777888999999999776666 2 444455555543 3334566655433221 12222334444443222
Q ss_pred CCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccc
Q 044053 118 MEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF 175 (327)
Q Consensus 118 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~ 175 (327)
.--.-+.+.|-.... .....+.++.+++++++|.--..-++-|
T Consensus 243 ~~G~rv~IsHlss~g---------------~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 243 ETGAHMHICHVNSTS---------------LRDIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred HhCCCEEEEeeccCC---------------cccHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 222336666754221 1135778899999999985443444433
No 134
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=33.93 E-value=3.4e+02 Score=24.05 Aligned_cols=92 Identities=14% Similarity=0.218 Sum_probs=57.0
Q ss_pred HHHHHcCCccEEEecccc---HHHHHHHHHhC----C-CC-CeeeecccCccccc-----HHHHHHHHHcCCEEEEecCC
Q 044053 159 EESQMLGLTKSIGLSNFS---CKKIETILTFA----T-IP-PSINQVEMHPVWQQ-----RKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 159 ~~l~~~Gkir~iGvS~~~---~~~l~~~~~~~----~-~~-~~~~q~~~~~~~~~-----~~ll~~~~~~gi~v~a~~pl 224 (327)
.+..+.|.=-++++.-|. +..++.+++.. . -. .++-.+.++....+ ++-++.|++.++.++.+.|=
T Consensus 57 ~Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr 136 (254)
T COG1099 57 ERAEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPR 136 (254)
T ss_pred hhHHhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 345777877777777765 33344443322 1 11 13344555554443 45688999999999999998
Q ss_pred CCCCccCCCCcccChHHHHHHHHHcCCCHHHHHH
Q 044053 225 GAVGKIYGSNQVLENEALKEIAKAHGKTVAQVSL 258 (327)
Q Consensus 225 ~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~al 258 (327)
.. ..-.-..+.+++...|..+.++.+
T Consensus 137 ~n--------K~e~t~~ildi~~~~~l~~~lvvI 162 (254)
T COG1099 137 RN--------KKEATSKILDILIESGLKPSLVVI 162 (254)
T ss_pred Cc--------chhHHHHHHHHHHHcCCChhheeh
Confidence 64 111235677788888887776543
No 135
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=33.83 E-value=3e+02 Score=27.57 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHc-CCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecC
Q 044053 151 YRGVWEAMEESQML-GLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 151 ~~~~~~~l~~l~~~-Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 223 (327)
.-+++++|..+++. ++|--||+.|.. ..+..+.+..+++ +.+..|+-...-...+..+++.|+.++.-..
T Consensus 83 ~~Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~ll~~~--i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~ 153 (526)
T TIGR02329 83 GFDVMQALARARRIASSIGVVTHQDTP-PALRRFQAAFNLD--IVQRSYVTEEDARSCVNDLRARGIGAVVGAG 153 (526)
T ss_pred hhhHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCCc--eEEEEecCHHHHHHHHHHHHHCCCCEEECCh
Confidence 55788999888875 588888888775 3344444444444 4555554443336788999999999987433
No 136
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.65 E-value=2.8e+02 Score=26.30 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=61.3
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHcC---CccEEEecc--ccHHHHHHHHHhCC-CCCeeee
Q 044053 123 LYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEE-SQMLG---LTKSIGLSN--FSCKKIETILTFAT-IPPSINQ 195 (327)
Q Consensus 123 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~G---kir~iGvS~--~~~~~l~~~~~~~~-~~~~~~q 195 (327)
.+-||.++....... .|.... ..+++++++++.+ +++.| +|+++=+.. .+.++++++.+... ....++-
T Consensus 237 aiSL~a~~~e~r~~i-~P~~~~---~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~Vnl 312 (368)
T PRK14456 237 AVSLHSADQEKRERL-MPQAAR---DYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINL 312 (368)
T ss_pred EEEecCCCHHHHHHh-ccccCC---CCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEE
Confidence 367888765432111 011110 2358889998875 55666 255555543 44556766666554 3456777
Q ss_pred cccCccccc----------HHHHHHHHHcCCEEEEecCCCC
Q 044053 196 VEMHPVWQQ----------RKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 196 ~~~~~~~~~----------~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
++||++... ..+.+..+++|+.+......|.
T Consensus 313 Ipyn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 313 IDYNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred eeeccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 888887431 4567778889999999888764
No 137
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=33.62 E-value=1.7e+02 Score=29.24 Aligned_cols=46 Identities=22% Similarity=0.130 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeee
Q 044053 149 MDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSIN 194 (327)
Q Consensus 149 ~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~ 194 (327)
.+..++.+.+.+.++..+|+.||+-.+...++...++..+++++.+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i 455 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGI 455 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeec
Confidence 3577888888899999999999999999998888888888774443
No 138
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=33.20 E-value=3.2e+02 Score=23.64 Aligned_cols=90 Identities=10% Similarity=0.107 Sum_probs=50.3
Q ss_pred eccccCCChHHHHHHHHHHHHcCCCEEeCCCCcC-----CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCC---------
Q 044053 32 GCAVDKSDTDALKLAVLEAIKLGYRHFDTAAMYG-----TEKALGEAIAEALRLGLVSSREQLFITSKLWC--------- 97 (327)
Q Consensus 32 G~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-----sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~--------- 97 (327)
|+...+.++++....++.+++.-=.++=.-.+.| ++..+...++.. + .|.-+||=|+...
T Consensus 65 ~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l---~---~~gl~FvDS~T~~~s~a~~~A~ 138 (213)
T PF04748_consen 65 GALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL---K---ERGLFFVDSRTTPRSVAPQVAK 138 (213)
T ss_dssp T-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH---H---HTT-EEEE-S--TT-SHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH---H---HcCCEEEeCCCCcccHHHHHHH
Confidence 3333335678888888888866222221122233 566676666654 1 4555677444411
Q ss_pred --------------CCCChhhHHHHHHHHHHHhCCCceeEEEee
Q 044053 98 --------------QNAHRDHVIPALKKSLSALQMEYLDLYLVH 127 (327)
Q Consensus 98 --------------~~~~~~~i~~~le~SL~rL~~d~iDl~~lH 127 (327)
...+.+.|++++++..+.-+..--=+..-|
T Consensus 139 ~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 139 ELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp HCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 234678899999999888877667777777
No 139
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=32.95 E-value=1.9e+02 Score=24.78 Aligned_cols=57 Identities=19% Similarity=0.469 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHHHHHHHHHHhcC--CEEeecCC--CHHHHHH
Q 044053 205 RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQVSLRWIVEQG--ATVVVKSL--NLERMKQ 280 (327)
Q Consensus 205 ~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~al~w~l~~~--~~vi~g~~--~~~~l~e 280 (327)
.+.+++.+++++.++.+.|=- .-|-.+.||+|++.++ .++|.|+. ..+|.-.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~eK------------------------D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~la 105 (203)
T TIGR01378 50 EEELDFYKKAGVKIIVFPPEK------------------------DTTDLELALKYALERGADEITILGATGGRLDHTLA 105 (203)
T ss_pred HHHHHHHHHcCCceEEcCCCC------------------------CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHH
Confidence 567788888888877764442 2466788999999887 46777764 6899999
Q ss_pred hhccc
Q 044053 281 NLGIF 285 (327)
Q Consensus 281 nl~a~ 285 (327)
|+..+
T Consensus 106 ni~~L 110 (203)
T TIGR01378 106 NLNLL 110 (203)
T ss_pred HHHHH
Confidence 98754
No 140
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=32.84 E-value=4.5e+02 Score=25.16 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc---HHHHHHHHHcCCEEEEecCCCC
Q 044053 152 RGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 152 ~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
..++..++.+.+.+.++.+-+...+.+.++++++. +.+.+++..+-||.-+- .++.+.|+++|+.++.=..++.
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 34555556655555566666665567777776642 34445555566665432 7789999999999887666543
No 141
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=32.55 E-value=3.9e+02 Score=24.33 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=99.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcC-C--------------HHHHHHHHHHHH--hcCCCCCCCcEEEEeccCCC---
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYG-T--------------EKALGEAIAEAL--RLGLVSSREQLFITSKLWCQ--- 98 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-s--------------E~~lG~~L~~~~--~~g~~~~R~~v~I~tK~~~~--- 98 (327)
.++...++=+..+++|-+.+-|.. |+ + +++.-.+.+-.. +.... ..++++|+--+++.
T Consensus 39 ~p~~v~~iH~~yl~AGAdiI~TnT-y~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~-~~~~~~VaGsiGP~ga~ 116 (305)
T PF02574_consen 39 NPELVRQIHRDYLEAGADIITTNT-YQASRERLKEYGLSDEEAEELNRAAVELAREAADEYG-SGRKVLVAGSIGPYGAY 116 (305)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEC--TT-SHHHHGGGT-GGGCHHHHHHHHHHHHHHHHTT----TT-SEEEEEEE--S--
T ss_pred CHHHHHHHHHHHHHCCCCeEEecC-CcCchhhhhhcCCcHHHHHHHHHHHHHHHHHHHhhcc-CCCccEEEEEccccccc
Confidence 345555665666799999998874 43 1 333333332110 11100 12247777776532
Q ss_pred ----------CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 044053 99 ----------NAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTK 168 (327)
Q Consensus 99 ----------~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir 168 (327)
..+.+.+++...+.++.|--..+|++++--.... .....+.+++++. .++--
T Consensus 117 l~g~~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~----------------~E~~aa~~a~~~~--~~~p~ 178 (305)
T PF02574_consen 117 LSGSEYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETMPSL----------------AEAKAALEAIKEV--TGLPV 178 (305)
T ss_dssp ------CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-C----------------SCHHHHHHHHHHH--HHCCS
T ss_pred chhhhccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHH----------------HHHHHHHHHHHhh--hhhhc
Confidence 2345778888888888776567999999865321 1244455555552 33434
Q ss_pred EEEecccc-------------HHHHHHHHHhCCCCCeeeecccCccccc-HHHHHHHHH-cCCEEEEecCCCCCCccCCC
Q 044053 169 SIGLSNFS-------------CKKIETILTFATIPPSINQVEMHPVWQQ-RKLIEFCKA-KGIIVTAYSPLGAVGKIYGS 233 (327)
Q Consensus 169 ~iGvS~~~-------------~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~-~gi~v~a~~pl~~~G~l~~~ 233 (327)
.|+++-.. ...++.+.......+..+-+++...... ..+...... .++.+++|--. |.....
T Consensus 179 ~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvNC~~~~~~~~~l~~~~~~~~~~~l~vyPNs---G~~~~~ 255 (305)
T PF02574_consen 179 WISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVNCTSPPEIMKALLELMSATHDIPLIVYPNS---GEPYDV 255 (305)
T ss_dssp SEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEESSS-HHHHHHHHHHHHHHT-SEEEEE--S---BS-TTS
T ss_pred eeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEEcCCCCcHHHHhHHHHHHhccCCceEEEecCC---CCCccc
Confidence 44444321 3344444332233455666666655433 334444443 38899888432 222211
Q ss_pred CcccChHHHHHHHHHcCCCHHHHHHHHHHhcCCEEeecC--CCHHHHHHhhccc
Q 044053 234 NQVLENEALKEIAKAHGKTVAQVSLRWIVEQGATVVVKS--LNLERMKQNLGIF 285 (327)
Q Consensus 234 ~~~~~~~~l~~ia~~~~~s~aq~al~w~l~~~~~vi~g~--~~~~~l~enl~a~ 285 (327)
...... .-..++. ...+.+-+|+- .|..+|=|+ ++++|+++--+++
T Consensus 256 ~~~~~~-~~~~~~~----~~~~~~~~~~~-~G~~iiGGCCGt~P~hI~al~~~l 303 (305)
T PF02574_consen 256 GKVWSE-TPEDFAP----EWAEFVKEWVE-AGARIIGGCCGTTPEHIRALAKAL 303 (305)
T ss_dssp SGGSTT-TTTSHGG----G-HHHHHHHHH-HHHCEE---TT--HHHHHHHHHHT
T ss_pred cccccc-chhhhHH----HHHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHHHh
Confidence 100000 0000000 12345666743 355666665 6899998765543
No 142
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.43 E-value=4.1e+02 Score=25.32 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=63.7
Q ss_pred CceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HcCC---ccEEEeccc--cHHHHHHHHHhCC-C--
Q 044053 119 EYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQ-MLGL---TKSIGLSNF--SCKKIETILTFAT-I-- 189 (327)
Q Consensus 119 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~Gk---ir~iGvS~~--~~~~l~~~~~~~~-~-- 189 (327)
++-=.+-||.++....... .|.. ...+++++++++.+.. +.|+ |+|+=+..+ +.++++++.+..+ .
T Consensus 237 ~~~LavSLha~d~e~R~~l-~p~n----~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~ 311 (373)
T PRK14459 237 PVTLAVSLHAPDDELRDEL-VPVN----TRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGG 311 (373)
T ss_pred CeEEEEEeCCCCHHHHHHh-cCcc----cCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccC
Confidence 3334577898876432110 0100 0135889999977776 5564 667766644 4555555555433 2
Q ss_pred -CCeeeecccCcccc----c------HHHHHHHHHcCCEEEEecCCCC
Q 044053 190 -PPSINQVEMHPVWQ----Q------RKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 190 -~~~~~q~~~~~~~~----~------~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
...++=++||+... . ..+.+..+++||.+......|.
T Consensus 312 ~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 312 GWVHVNLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred CCeEEEEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 45688899998632 1 4577778899999999888864
No 143
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=32.25 E-value=4.2e+02 Score=24.71 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred cCcceeeccccC----------CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 044053 26 MPVIGLGCAVDK----------SDTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKL 95 (327)
Q Consensus 26 vs~lglG~~~~~----------~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~ 95 (327)
+.+|.+|.-.+. .+.+++.+.++.+.+.|+..+..==.| |+
T Consensus 109 vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~----------------Gl------------- 159 (350)
T PRK08446 109 VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIY----------------DT------------- 159 (350)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeec----------------CC-------------
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCceeEEEeec-------------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 044053 96 WCQNAHRDHVIPALKKSLSALQMEYLDLYLVHL-------------PISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQ 162 (327)
Q Consensus 96 ~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~-------------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 162 (327)
+..+.+.+++.++..++ |+.++|.+|.+.- ++. .+-...+.+.|.
T Consensus 160 --Pgqt~~~~~~~l~~~~~-l~~~~is~y~L~~~~gT~l~~~~~~~~~~-------------------~~~~~~~~~~l~ 217 (350)
T PRK08446 160 --PLDNKKLLKEELKLAKE-LPINHLSAYSLTIEENTPFFEKNHKKKDD-------------------ENLAKFFIEQLE 217 (350)
T ss_pred --CCCCHHHHHHHHHHHHh-cCCCEEEeccceecCCChhHHhhhcCCCH-------------------HHHHHHHHHHHH
Q ss_pred HcCCccEEEecccc
Q 044053 163 MLGLTKSIGLSNFS 176 (327)
Q Consensus 163 ~~Gkir~iGvS~~~ 176 (327)
+.| -..+++|||.
T Consensus 218 ~~G-y~~yeis~fa 230 (350)
T PRK08446 218 ELG-FKQYEISNFG 230 (350)
T ss_pred HCC-CcEEEeehhh
No 144
>TIGR00035 asp_race aspartate racemase.
Probab=32.22 E-value=1.4e+02 Score=26.05 Aligned_cols=83 Identities=12% Similarity=-0.026 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHH-H
Q 044053 102 RDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKK-I 180 (327)
Q Consensus 102 ~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~-l 180 (327)
.+..++-++..-.+.+.++++.+.+++|+..+. ...- ..+.. ......+.+.++.|.+.| +..|-++..+... +
T Consensus 16 ~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr--~~~~-~~~~~-~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~ 90 (229)
T TIGR00035 16 AELFRRINEKTKAKRDQEHPAEVLFNNPNIPDR--TAYI-LGRGE-DRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFA 90 (229)
T ss_pred HHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHH--HHHH-hcCCc-chHHHHHHHHHHHHHHcC-CCEEEECCccHHHHH
Confidence 355666666777788899999999999864321 0000 00000 112445667777777765 8999998887665 4
Q ss_pred HHHHHhCCC
Q 044053 181 ETILTFATI 189 (327)
Q Consensus 181 ~~~~~~~~~ 189 (327)
+++.+...+
T Consensus 91 ~~l~~~~~i 99 (229)
T TIGR00035 91 EDIQKAIGI 99 (229)
T ss_pred HHHHHhCCC
Confidence 444444444
No 145
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=31.70 E-value=5e+02 Score=25.39 Aligned_cols=117 Identities=15% Similarity=0.044 Sum_probs=65.0
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCCCCc-EEEEeccCCCCCChhhHHHHHHHHHHHhC---CC--ceeEEEeecCCCCC
Q 044053 60 TAAMYGTEKALGEAIAEALRLGLVSSREQ-LFITSKLWCQNAHRDHVIPALKKSLSALQ---ME--YLDLYLVHLPISSK 133 (327)
Q Consensus 60 TA~~YgsE~~lG~~L~~~~~~g~~~~R~~-v~I~tK~~~~~~~~~~i~~~le~SL~rL~---~d--~iDl~~lH~p~~~~ 133 (327)
..-.||.|+.|-++|++..+.. ++.+ ++|.|-....- --+.+..-+++.-++++ .. .+.++.+|.|+...
T Consensus 70 ~d~VfGg~~~L~~ai~~~~~~~---~~p~~i~v~ttc~~ei-iGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~g 145 (461)
T TIGR02931 70 DGAVFGALDRVEEAVDVLLTRY---PDVKVVPIITTCSTEI-IGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVG 145 (461)
T ss_pred CceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHHh-hhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCC
Confidence 3356788888888988764432 3334 55666653321 12455555555545442 11 36789999887642
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHH-HHHH----cCCccEEEecc--ccHHHHHHHHHhCCCCCe
Q 044053 134 PGEVGFPVPKEDLLPMDYRGVWEAME-ESQM----LGLTKSIGLSN--FSCKKIETILTFATIPPS 192 (327)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~----~Gkir~iGvS~--~~~~~l~~~~~~~~~~~~ 192 (327)
.. ....+.+++++- .+.. +++|.-||-.+ -+.+.+.++++..++.+.
T Consensus 146 s~------------~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 146 SM------------ITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred cH------------HHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceE
Confidence 10 011233333333 2222 46688888543 346778888888876644
No 146
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=31.66 E-value=1.6e+02 Score=26.19 Aligned_cols=65 Identities=23% Similarity=0.430 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCC----------CHHHHHHHHHHhcC--CEEeecC
Q 044053 205 RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGK----------TVAQVSLRWIVEQG--ATVVVKS 272 (327)
Q Consensus 205 ~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~----------s~aq~al~w~l~~~--~~vi~g~ 272 (327)
.++.++|+++||.+++ +|+.. +.+.. ..++++ +- --.|+.+.+.+ +.+=.|+
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~-------------~s~d~-l~~~~~~~~KIaS~dl~n-~~lL~~~A~tgkPvIlSTG~ 122 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDE-------------ESVDF-LEELGVPAYKIASGDLTN-LPLLEYIAKTGKPVILSTGM 122 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SH-------------HHHHH-HHHHT-SEEEE-GGGTT--HHHHHHHHTT-S-EEEE-TT
T ss_pred HHHHHHHHHcCCEEEE-CCCCH-------------HHHHH-HHHcCCCEEEeccccccC-HHHHHHHHHhCCcEEEECCC
Confidence 6789999999999887 46632 12222 233221 11 12466666665 4455688
Q ss_pred CCHHHHHHhhccc
Q 044053 273 LNLERMKQNLGIF 285 (327)
Q Consensus 273 ~~~~~l~enl~a~ 285 (327)
++.+++++.++.+
T Consensus 123 stl~EI~~Av~~~ 135 (241)
T PF03102_consen 123 STLEEIERAVEVL 135 (241)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999887765
No 147
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.64 E-value=3.1e+02 Score=25.90 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHcC-C---ccEEEec--cccHHHHHHHHHhCC-CCCeeeecccCccccc----------HHHHHHHH
Q 044053 150 DYRGVWEAMEESQMLG-L---TKSIGLS--NFSCKKIETILTFAT-IPPSINQVEMHPVWQQ----------RKLIEFCK 212 (327)
Q Consensus 150 ~~~~~~~~l~~l~~~G-k---ir~iGvS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~ll~~~~ 212 (327)
+.++++++++++.+.+ + |+++=+. |-+.++++++.+... .+..++=++||++... ..+.+.++
T Consensus 244 ~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~ 323 (356)
T PRK14455 244 PLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLK 323 (356)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHH
Confidence 4789999999887654 2 4455444 344577777666543 3456777788886421 34566688
Q ss_pred HcCCEEEEecCCCC
Q 044053 213 AKGIIVTAYSPLGA 226 (327)
Q Consensus 213 ~~gi~v~a~~pl~~ 226 (327)
++|+.+......|.
T Consensus 324 ~~gi~v~ir~~~g~ 337 (356)
T PRK14455 324 KNGVNCTIRREHGT 337 (356)
T ss_pred HCCCcEEEeCCCCc
Confidence 99999988877754
No 148
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=31.46 E-value=2.3e+02 Score=27.07 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeeecccCcc---cccHHHHHHHHHcCCEEEEecCC
Q 044053 155 WEAMEESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 155 ~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~~pl 224 (327)
++.+.+|++...+. ..|=|.++..++.++++... .+++|...... ..-.++...|+++||.++.++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 57777888877665 66667777888888887654 34666665433 22367899999999999887654
No 149
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.07 E-value=4.4e+02 Score=24.56 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeeecccCcc---cccHHHHHHHHHcCCEEEEec
Q 044053 155 WEAMEESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 155 ~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~~ 222 (327)
++.+.+|+++.-+. ..|=|.++...+..+++...+ +++|+..... ..-.++.+.|+++||.++..+
T Consensus 216 ~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~--d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 216 VEALAEIAARTTIPIATGERLFSRWDFKELLEDGAV--DIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCC--CEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 57788888876665 566677888898888876543 4677665433 223689999999999998654
No 150
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=31.04 E-value=2e+02 Score=26.92 Aligned_cols=65 Identities=8% Similarity=0.010 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeeecccCcc---cccHHHHHHHHHcCCEEEEe
Q 044053 155 WEAMEESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 155 ~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~ 221 (327)
++.+.+|+++..+. +.|=|-++...+.++++...++ ++|+..... ..-.++..+|+++|+.++..
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d--~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGAAD--VFSLKIAKSGGLRRAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCC--eEEEeecccCCHHHHHHHHHHHHHcCCceeec
Confidence 45555555554444 4444455566666665543322 444433222 11245666666666666543
No 151
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=30.99 E-value=5.1e+02 Score=25.25 Aligned_cols=124 Identities=14% Similarity=0.084 Sum_probs=72.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CccEEEec--ccc--HHHHHHHHHh---CCCCCeeeecccCcccccHHHHHHHHHcCCE
Q 044053 146 LLPMDYRGVWEAMEESQMLG-LTKSIGLS--NFS--CKKIETILTF---ATIPPSINQVEMHPVWQQRKLIEFCKAKGII 217 (327)
Q Consensus 146 ~~~~~~~~~~~~l~~l~~~G-kir~iGvS--~~~--~~~l~~~~~~---~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~ 217 (327)
+.....+.+.+.++.+++.. .++.|-+. +|. ...+.++++. .++.+. .+... .-..++++..++.|..
T Consensus 224 ~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~-~~~~~---~~~~e~l~~l~~aG~~ 299 (472)
T TIGR03471 224 YRTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWS-CNARA---NVDYETLKVMKENGLR 299 (472)
T ss_pred eEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEE-EEecC---CCCHHHHHHHHHcCCC
Confidence 33456889999999999874 56665543 333 4444444332 222221 11211 1247899999999987
Q ss_pred EEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHHHHHHHHHHhcC----CEEeecC--CCHHHHHHhhcc
Q 044053 218 VTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQVSLRWIVEQG----ATVVVKS--LNLERMKQNLGI 284 (327)
Q Consensus 218 v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~al~w~l~~~----~~vi~g~--~~~~~l~enl~a 284 (327)
.+..+.=.+ ..+.++.+-+.+...-..-+++++...| ...|+|. .+.+.+++.++.
T Consensus 300 ~v~iGiES~-----------s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~ 361 (472)
T TIGR03471 300 LLLVGYESG-----------DQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDF 361 (472)
T ss_pred EEEEcCCCC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHH
Confidence 766533321 2345555543332223345677777777 3457784 688888887654
No 152
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=30.90 E-value=3.1e+02 Score=24.41 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=66.9
Q ss_pred cHHHHHHHHHhCCCCCeeeecccCccccc--HHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCH
Q 044053 176 SCKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTV 253 (327)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~ 253 (327)
+.+.+.++++..++..++. --|||-.+ ....+.|++.||.++-|.--.. - .....+.. -++-
T Consensus 54 ~~~~l~~~l~~~~i~~vID--ATHPfA~~is~na~~a~~~~~ipylR~eRp~~-~-~~~~~~~~------------~v~~ 117 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVID--ATHPFAAEISQNAIEACRELGIPYLRFERPSW-Q-PEPDDNWH------------YVDS 117 (249)
T ss_pred CHHHHHHHHHhCCCcEEEE--CCCchHHHHHHHHHHHHhhcCcceEEEEcCCc-c-cCCCCeEE------------EeCC
Confidence 5666666666655554444 23455444 5678888888888887743321 0 00000111 1222
Q ss_pred HHHHHHHHHhcC---CEEeecCCCHHHHHH-hhcccc---cccCHHHHHHHhcCCCCCccCCccccCCCCCc
Q 044053 254 AQVSLRWIVEQG---ATVVVKSLNLERMKQ-NLGIFD---WKLTDDDYDKINQIPQHRLIPSDFWVSPQGPF 318 (327)
Q Consensus 254 aq~al~w~l~~~---~~vi~g~~~~~~l~e-nl~a~~---~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 318 (327)
.+-|.+++.+.+ +..-.|+++...+.. ...... --|+..+. ...+++..+-..+|||
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~--------~~g~~~~~iia~~GPf 181 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPES--------ALGFPPKNIIAMQGPF 181 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccc--------cCCCChhhEEEEeCCC
Confidence 344666664433 566788899988876 222111 14555544 4556777788888999
No 153
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=30.73 E-value=2.1e+02 Score=24.71 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=32.1
Q ss_pred CCccEEEec-cccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHH-cCCEEE
Q 044053 165 GLTKSIGLS-NFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKA-KGIIVT 219 (327)
Q Consensus 165 Gkir~iGvS-~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~-~gi~v~ 219 (327)
+++..+||. |-+++.+.++++... ++++|++-+. ..+.+...++ .++.++
T Consensus 53 ~~i~~VgVf~~~~~~~i~~~~~~~~--~d~vQLHg~e---~~~~~~~l~~~~~~~ii 104 (210)
T PRK01222 53 PFVKVVGVFVNASDEEIDEIVETVP--LDLLQLHGDE---TPEFCRQLKRRYGLPVI 104 (210)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhcC--CCEEEECCCC---CHHHHHHHHhhcCCcEE
Confidence 568999987 567888888888664 4689986532 2334444443 345443
No 154
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=30.45 E-value=3.9e+02 Score=23.69 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCC-EEeCCCCcCCHHHHHHHHHHHHhcCCCCCCC--cEEEEeccCCCCCChhhHHHHHHHHHHHhCCCce
Q 044053 45 LAVLEAIKLGYR-HFDTAAMYGTEKALGEAIAEALRLGLVSSRE--QLFITSKLWCQNAHRDHVIPALKKSLSALQMEYL 121 (327)
Q Consensus 45 ~~l~~A~~~Gi~-~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~--~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~i 121 (327)
..+..|-+.|.- -+ ...++.++++.... .+. .+.++..+.+.......+...+.+-+++.+++.-
T Consensus 53 ~Fi~~aE~~gli~~l-------~~~v~~~a~~~~~~-----~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~ 120 (256)
T COG2200 53 EFIPLAEETGLIVEL-------GRWVLEEACRQLRT-----WPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH 120 (256)
T ss_pred HHHHHHHHcCCHHHH-------HHHHHHHHHHHHHh-----hhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc
Confidence 445556666641 11 34556666665411 122 3777777655444446677788888888876443
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecccc--HHHHHHHHHhCCCCCeeeecccC
Q 044053 122 DLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS--CKKIETILTFATIPPSINQVEMH 199 (327)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~--~~~l~~~~~~~~~~~~~~q~~~~ 199 (327)
-+.+--... .. ....+.+.+.+..|++.| | .|.+..|. ...+..+.+ .+++++-+.-+
T Consensus 121 -~l~lEitE~-------------~~-~~~~~~~~~~l~~L~~~G-~-~ialDDFGtG~ssl~~L~~---l~~d~iKID~~ 180 (256)
T COG2200 121 -RLVLEITES-------------AL-IDDLDTALALLRQLRELG-V-RIALDDFGTGYSSLSYLKR---LPPDILKIDRS 180 (256)
T ss_pred -eEEEEEeCc-------------hh-hcCHHHHHHHHHHHHHCC-C-eEEEECCCCCHHHHHHHhh---CCCCeEEECHH
Confidence 222221100 00 112446788999999999 2 46666665 334444433 33444433333
Q ss_pred ccc--------cc--HHHHHHHHHcCCEEEEe
Q 044053 200 PVW--------QQ--RKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 200 ~~~--------~~--~~ll~~~~~~gi~v~a~ 221 (327)
... .. +.++..|++.|+.++|-
T Consensus 181 fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaE 212 (256)
T COG2200 181 FVRDLETDARDQAIVRAIVALAHKLGLTVVAE 212 (256)
T ss_pred HHhhcccCcchHHHHHHHHHHHHHCCCEEEEe
Confidence 222 11 56899999999999984
No 155
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=30.30 E-value=98 Score=23.30 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=35.2
Q ss_pred ccccHHHHHHHHHhCCCCCeeeecccCcc---cccHHHHHHHHHcCCEEEEecCCCC
Q 044053 173 SNFSCKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 173 S~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
|.++...+.++++...+ +++|+...-. ..-..+.++|+++|+.++..+. .+
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~ 56 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ES 56 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SS
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CC
Confidence 45677888888886544 4666664333 2226799999999999999886 54
No 156
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=30.26 E-value=1.1e+02 Score=29.07 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhc--CCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRL--GLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSAL 116 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~--g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL 116 (327)
...+..+.|+.+++.|+- ...|+++.++ +++...+++ +.-...+.++.+ ..+...+...++.|
T Consensus 39 ~pp~i~~Al~~rvdhGvf----GY~~~~~~~~-~ai~~w~~~r~~~~i~~e~i~~~----------p~VVpgi~~~I~~~ 103 (388)
T COG1168 39 TPPEIIEALRERVDHGVF----GYPYGSDELY-AAIAHWFKQRHQWEIKPEWIVFV----------PGVVPGISLAIRAL 103 (388)
T ss_pred CCHHHHHHHHHHHhcCCC----CCCCCCHHHH-HHHHHHHHHhcCCCCCcceEEEc----------CcchHhHHHHHHHh
Confidence 356678889999999953 3334466544 344333221 110022233322 23455566666666
Q ss_pred CCCceeEEEeecCCC
Q 044053 117 QMEYLDLYLVHLPIS 131 (327)
Q Consensus 117 ~~d~iDl~~lH~p~~ 131 (327)
|+-=|-+.++.|.+
T Consensus 104 -T~~gd~Vvi~tPvY 117 (388)
T COG1168 104 -TKPGDGVVIQTPVY 117 (388)
T ss_pred -CcCCCeeEecCCCc
Confidence 56678888888855
No 157
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.23 E-value=3e+02 Score=26.44 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc---HHHHHHHHHcCCEEEEecCCCCC
Q 044053 151 YRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGAV 227 (327)
Q Consensus 151 ~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~~ 227 (327)
...++.-++.+.++.-|....+-.-+...+.+.+...+.+.+.+..+-||...- ..+.+.|+++|+.++.=..++.
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat- 190 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT- 190 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-
Confidence 456778888887777777777666666565555543345677888889988764 7789999999999998888876
Q ss_pred CccC
Q 044053 228 GKIY 231 (327)
Q Consensus 228 G~l~ 231 (327)
+.+.
T Consensus 191 P~~q 194 (396)
T COG0626 191 PVLQ 194 (396)
T ss_pred cccc
Confidence 5553
No 158
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=30.16 E-value=5.2e+02 Score=25.09 Aligned_cols=146 Identities=15% Similarity=0.049 Sum_probs=81.1
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCC
Q 044053 62 AMYGTEKALGEAIAEALRLGLVSSR-EQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFP 140 (327)
Q Consensus 62 ~~YgsE~~lG~~L~~~~~~g~~~~R-~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~ 140 (327)
-.||.+..|-++|++..+.. ++ +-++|.|-.... .--+.+..-+++.-++++ +.++.+|.|+......
T Consensus 97 ~V~Gg~~~L~~aI~~~~~~~---~p~~~I~V~~tC~~~-liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~---- 165 (443)
T TIGR01862 97 IVFGGEKKLKKLIHEAFTEF---PLIKAISVYATCPTG-LIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQ---- 165 (443)
T ss_pred eeeCcHHHHHHHHHHHHHhC---CccceEEEECCChHH-HhccCHHHHHHHHHHhcC---CCEEEEecCCccCCcc----
Confidence 46788888888988765532 44 567777775332 112455555555444554 7899999887642100
Q ss_pred CCCCCCCCCCHHHHHHH-HHHHH--------HcCCccEEEeccc--cHHHHHHHHHhCCCCCeeeecc------------
Q 044053 141 VPKEDLLPMDYRGVWEA-MEESQ--------MLGLTKSIGLSNF--SCKKIETILTFATIPPSINQVE------------ 197 (327)
Q Consensus 141 ~~~~~~~~~~~~~~~~~-l~~l~--------~~Gkir~iGvS~~--~~~~l~~~~~~~~~~~~~~q~~------------ 197 (327)
......+.++ ++.+. +.++|.-||-.++ +.+++.++++..++++...-..
T Consensus 166 -------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~ 238 (443)
T TIGR01862 166 -------SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHK 238 (443)
T ss_pred -------chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccc
Confidence 0112333333 33343 2467888885554 3567888888877664322111
Q ss_pred --cCccc-cc--HHHHHHH-HHcCCEEEEecCCC
Q 044053 198 --MHPVW-QQ--RKLIEFC-KAKGIIVTAYSPLG 225 (327)
Q Consensus 198 --~~~~~-~~--~~ll~~~-~~~gi~v~a~~pl~ 225 (327)
+|+.. +. ....++. ++.|+.++...|++
T Consensus 239 A~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~G 272 (443)
T TIGR01862 239 AKLNLVHCARSANYIANELEERYGIPWMKIDFFG 272 (443)
T ss_pred CCEEEEEChHHHHHHHHHHHHHhCCCeEecccCC
Confidence 22211 11 1233333 46699999887753
No 159
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.07 E-value=1.4e+02 Score=25.87 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCC---ccEEEeccc-cHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEE
Q 044053 154 VWEAMEESQMLGL---TKSIGLSNF-SCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTA 220 (327)
Q Consensus 154 ~~~~l~~l~~~Gk---ir~iGvS~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a 220 (327)
..+.+++++++-. =-.||+.+. +.++++++++..- .+.+ +|. -..+++++|+++||.++.
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA-~Fiv-----sP~-~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA-QFIV-----SPS-FNRETAKICNLYQIPYLP 114 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC-CEEE-----CCC-CCHHHHHHHHHcCCCEEC
Confidence 4566666665421 135888775 5888888887542 3222 232 237899999999999884
No 160
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=29.94 E-value=1.6e+02 Score=27.80 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCcc-EEEeccccHHHHHHHHHhCCCCCeeeecccCcc---cccHHHHHHHHHcCCEEEEecCC
Q 044053 155 WEAMEESQMLGLTK-SIGLSNFSCKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 155 ~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~~pl 224 (327)
++.+.+|++...+. ..|=|-++..++.++++...+ +++|+...-. ..-..+...|+.+|+.++..+.+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~--d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAA--DVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCC--CEEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 45555565555444 555566666666666654432 2455443332 11245666677777776554333
No 161
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=29.85 E-value=1.4e+02 Score=28.54 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHcC-CccEEEecccc---HHHHHHHHHhCC--CCCeeeecccCcccccHHHHHHHHHcCCEEEEecC
Q 044053 150 DYRGVWEAMEESQMLG-LTKSIGLSNFS---CKKIETILTFAT--IPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 150 ~~~~~~~~l~~l~~~G-kir~iGvS~~~---~~~l~~~~~~~~--~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 223 (327)
....+++.+..|.++| .|.|+.|-+.. .++++++++.-. +.+.....+.....+=.++-+.|+++|+.+..=.+
T Consensus 100 EH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAv 179 (386)
T COG1104 100 EHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAV 179 (386)
T ss_pred ccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehh
Confidence 3567899999998889 79999998764 677777775322 11122222333333337899999999987765544
Q ss_pred CC
Q 044053 224 LG 225 (327)
Q Consensus 224 l~ 225 (327)
-+
T Consensus 180 Qa 181 (386)
T COG1104 180 QA 181 (386)
T ss_pred hh
Confidence 43
No 162
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=29.75 E-value=73 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTAAMYG 65 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg 65 (327)
.+...+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 4567788899999999999999999884
No 163
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=29.74 E-value=4.1e+02 Score=25.55 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=62.2
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC-CCceeEEEeecCCCCCCCCCCCC
Q 044053 62 AMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQ-MEYLDLYLVHLPISSKPGEVGFP 140 (327)
Q Consensus 62 ~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~-~d~iDl~~lH~p~~~~~~~~~~~ 140 (327)
-.||.|+.+-++|++..+.- +.+-++|.|-....-. -+.+..-+.+.-++.- ...+.++.+|.|+....
T Consensus 61 ~VfGg~~~L~~~i~~~~~~~---~p~~I~V~ttc~~eiI-GdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~------ 130 (417)
T cd01966 61 TILGGGENLEEALDTLAERA---KPKVIGLLSTGLTETR-GEDIAGALKQFRAEHPELADVPVVYVSTPDFEGS------ 130 (417)
T ss_pred EEECCHHHHHHHHHHHHHhc---CCCEEEEECCCccccc-ccCHHHHHHHHHhhccccCCCeEEEecCCCCCCc------
Confidence 45788888888887764322 4455777777644322 1344444444333311 01477888998865321
Q ss_pred CCCCCCCCCCHHHHHHHHHH-H--------HHcCCccEEEeccc---cHHHHHHHHHhCCCCC
Q 044053 141 VPKEDLLPMDYRGVWEAMEE-S--------QMLGLTKSIGLSNF---SCKKIETILTFATIPP 191 (327)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~-l--------~~~Gkir~iGvS~~---~~~~l~~~~~~~~~~~ 191 (327)
.....+.++++|-+ + ++.++|.=||-++. +.+++.++++..++.+
T Consensus 131 ------~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v 187 (417)
T cd01966 131 ------LEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEP 187 (417)
T ss_pred ------HHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 01123334443332 2 23566888875554 3466777777777664
No 164
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=29.69 E-value=2.8e+02 Score=23.03 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=52.8
Q ss_pred CccEEEeccccHHHH------HHHHHhC-CCCCeeeecccCccccc---------------HHHHHHHHHcCCEEEEecC
Q 044053 166 LTKSIGLSNFSCKKI------ETILTFA-TIPPSINQVEMHPVWQQ---------------RKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 166 kir~iGvS~~~~~~l------~~~~~~~-~~~~~~~q~~~~~~~~~---------------~~ll~~~~~~gi~v~a~~p 223 (327)
.|...|++..+..++ ..++... ..+.+++++-.|-.... ..+++.++++|+.++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 567778888876543 2344332 34556777765543321 4688889999999998887
Q ss_pred CCCCCccCCC--Ccc--cChHHHHHHHHHcCCCH
Q 044053 224 LGAVGKIYGS--NQV--LENEALKEIAKAHGKTV 253 (327)
Q Consensus 224 l~~~G~l~~~--~~~--~~~~~l~~ia~~~~~s~ 253 (327)
......-... ... ...+.++++|+++|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 6431111110 001 11467888898888653
No 165
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=29.45 E-value=4.8e+02 Score=24.47 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=49.9
Q ss_pred EEEeecCCCCCCCCCC-CCCC-CC-CCCCCCHHHHHHHHHHHHHcCCccEEEecc-----ccHHHHHHHHHh---CCCCC
Q 044053 123 LYLVHLPISSKPGEVG-FPVP-KE-DLLPMDYRGVWEAMEESQMLGLTKSIGLSN-----FSCKKIETILTF---ATIPP 191 (327)
Q Consensus 123 l~~lH~p~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~-----~~~~~l~~~~~~---~~~~~ 191 (327)
-+|+|-|......... ++.. .. .......+.+.+.++.+.....++.|-+.. .+++.++.+.+. ....+
T Consensus 5 ~lYiHiPfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~ 84 (374)
T PRK05799 5 SLYIHIPFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKKLNKKE 84 (374)
T ss_pred EEEEEeCCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHhCCCCC
Confidence 3789988765442211 1111 11 010001333444444333334466664432 245666655433 22221
Q ss_pred -eeeecccCcccccHHHHHHHHHcCCEEEEecC
Q 044053 192 -SINQVEMHPVWQQRKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 192 -~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 223 (327)
.-+-++.||-.-..+.+...++.|+.-+..+.
T Consensus 85 ~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGv 117 (374)
T PRK05799 85 DLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGL 117 (374)
T ss_pred CCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEEC
Confidence 12334556655568899999999987665544
No 166
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=29.11 E-value=3.5e+02 Score=22.83 Aligned_cols=41 Identities=17% Similarity=0.025 Sum_probs=24.6
Q ss_pred ceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHH
Q 044053 120 YLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKI 180 (327)
Q Consensus 120 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l 180 (327)
.+|.+|||..+. . +..+.+.+......++.+|++++....+
T Consensus 73 ~~d~Vqlhg~e~-------------------~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES-------------------P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC-------------------H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 478899997531 1 2233333333346788999998765443
No 167
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=28.83 E-value=1.9e+02 Score=23.83 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHHHHHHHHHhcCCCCCCCcEEEEecc-CCCCCChhhHHHHHHHHHHHhCC
Q 044053 41 DALKLAVLEAIKLGYRHFDTAAMYG-TEKALGEAIAEALRLGLVSSREQLFITSKL-WCQNAHRDHVIPALKKSLSALQM 118 (327)
Q Consensus 41 ~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~-~~~~~~~~~i~~~le~SL~rL~~ 118 (327)
+...-.+++|-+.||.+|=.|..|| +-..+-+.+. | . =++++.|-- +...-+...+...+++-|+..|.
T Consensus 14 ~tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g---~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa 84 (186)
T COG1751 14 ETLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G---D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGA 84 (186)
T ss_pred HHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c---C-ceEEEEEeecccccCCceecCHHHHHHHHHcCc
Confidence 3455567888899999999999998 3222222222 1 1 235555543 33333445677888899999985
Q ss_pred C
Q 044053 119 E 119 (327)
Q Consensus 119 d 119 (327)
+
T Consensus 85 ~ 85 (186)
T COG1751 85 K 85 (186)
T ss_pred e
Confidence 3
No 168
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=28.83 E-value=5e+02 Score=26.53 Aligned_cols=88 Identities=9% Similarity=-0.011 Sum_probs=49.7
Q ss_pred HHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEec-cccHHHHHHHHHhCCCCCe
Q 044053 114 SALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLS-NFSCKKIETILTFATIPPS 192 (327)
Q Consensus 114 ~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~ 192 (327)
..+|.||+=+.+.....+ ..+.+.+.+.+.+......++.+||- |-+++.+.++.+... ++
T Consensus 20 ~~~gaD~iGfIf~~~SpR----------------~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~--ld 81 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPR----------------FVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNG--ID 81 (610)
T ss_pred HHcCCCEEEEEecCCCCC----------------CCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcC--CC
Confidence 448999999875443211 12244413333333333357889995 777889988887664 45
Q ss_pred eeecccCcccccHHHHHHHHHcCCEEE
Q 044053 193 INQVEMHPVWQQRKLIEFCKAKGIIVT 219 (327)
Q Consensus 193 ~~q~~~~~~~~~~~ll~~~~~~gi~v~ 219 (327)
++|++-..-....+.++..++.++.++
T Consensus 82 ~vQLHG~e~~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 82 FVQLHGAESKAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred EEEECCCCCcccHHHHHHhhhcCCcEE
Confidence 888875432111334444444455443
No 169
>PLN02363 phosphoribosylanthranilate isomerase
Probab=28.79 E-value=2.7e+02 Score=24.91 Aligned_cols=74 Identities=9% Similarity=0.085 Sum_probs=44.0
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEec-cccHHH
Q 044053 101 HRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLS-NFSCKK 179 (327)
Q Consensus 101 ~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS-~~~~~~ 179 (327)
+.+.++.+. ++|.|||=+.+...-.+ ..+.+.+ +.+-+......++.+||- |-+++.
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR----------------~Vs~e~a-~~I~~~l~~~~~~~VgVfv~~~~~~ 113 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKR----------------SISLSVA-KEISQVAREGGAKPVGVFVDDDANT 113 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCC----------------cCCHHHH-HHHHHhccccCccEEEEEeCCCHHH
Confidence 345555544 48999999874332111 1223333 333333332246789985 777888
Q ss_pred HHHHHHhCCCCCeeeeccc
Q 044053 180 IETILTFATIPPSINQVEM 198 (327)
Q Consensus 180 l~~~~~~~~~~~~~~q~~~ 198 (327)
+.++++... ++++|++-
T Consensus 114 I~~~~~~~~--ld~VQLHG 130 (256)
T PLN02363 114 ILRAADSSD--LELVQLHG 130 (256)
T ss_pred HHHHHHhcC--CCEEEECC
Confidence 888887664 56889875
No 170
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=28.73 E-value=4.3e+02 Score=24.54 Aligned_cols=51 Identities=12% Similarity=0.026 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH-HcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 044053 41 DALKLAVLEAI-KLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKL 95 (327)
Q Consensus 41 ~~~~~~l~~A~-~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~ 95 (327)
.++.+++...+ +.+.+.|=|=..--.-.-++..|+..++.|. =+++|+|=.
T Consensus 43 ~~A~~i~~~ml~~~~~~ifL~~tg~mvsaGlr~ii~~Li~~~~----VD~iVtTga 94 (316)
T PRK02301 43 AEAVDIYEEMLADDDVTKFFGLAGAMVPAGMRGIVSDLIRDGH----IDVLVTTGA 94 (316)
T ss_pred HHHHHHHHHHHhCCCCeEEEEcccchhHHHHHHHHHHHHHcCC----eeEEEcCCC
Confidence 56778888888 5666654321111123446777777765543 366777764
No 171
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=28.60 E-value=3.7e+02 Score=22.95 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCC----------CCcC-----CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChh
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTA----------AMYG-----TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRD 103 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA----------~~Yg-----sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~ 103 (327)
+.++..+..+.+.++|+..||-- +.|| .-+.+-+.++.. ++. -.+-|+.|+.......+
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v-~~~-----~~~~v~vk~r~~~~~~~ 138 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV-REA-----VPIPVTVKIRLGWDDEE 138 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH-HHh-----cCCCEEEEEeeccCCch
Confidence 46777788888889999999742 4576 334444555443 111 11345556522111111
Q ss_pred hHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccc-cHHHHHH
Q 044053 104 HVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF-SCKKIET 182 (327)
Q Consensus 104 ~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~-~~~~l~~ 182 (327)
...+- -+.|+.+|+ |.+.+|....... . .....|+.+.++++.-.+.-++.... +.+++.+
T Consensus 139 ~~~~~-~~~l~~~Gv---d~i~v~~~~~~~~--~------------~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~ 200 (231)
T cd02801 139 ETLEL-AKALEDAGA---SALTVHGRTREQR--Y------------SGPADWDYIAEIKEAVSIPVIANGDIFSLEDALR 200 (231)
T ss_pred HHHHH-HHHHHHhCC---CEEEECCCCHHHc--C------------CCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHH
Confidence 22222 223455564 5556675422110 0 00112456666777666776766665 5777777
Q ss_pred HHHhCCC
Q 044053 183 ILTFATI 189 (327)
Q Consensus 183 ~~~~~~~ 189 (327)
+++....
T Consensus 201 ~l~~~ga 207 (231)
T cd02801 201 CLEQTGV 207 (231)
T ss_pred HHHhcCC
Confidence 7775433
No 172
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=28.38 E-value=5.6e+02 Score=24.91 Aligned_cols=171 Identities=9% Similarity=0.086 Sum_probs=86.9
Q ss_pred hhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCC-CCCC--CCCCCCCCHHHHHHHHHHHHH-----cCCccEEEe-
Q 044053 102 RDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVG-FPVP--KEDLLPMDYRGVWEAMEESQM-----LGLTKSIGL- 172 (327)
Q Consensus 102 ~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~l~~-----~Gkir~iGv- 172 (327)
++.+.....+.++.-..+.--.+|+|-|......... +... .......-.+.+.+.++...+ .+.|+.|=+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~G 121 (449)
T PRK09058 42 AEQLAATWQRLTQQTLRARKRLLYIHIPFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFG 121 (449)
T ss_pred hHHHHHHHHHHHhhcCCCCceEEEEEeCCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEEC
Confidence 3566666666663212223347899999765542211 1111 011000012333444444332 245665533
Q ss_pred ----ccccHHHHHHHHHhCC----CCC-eeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHH
Q 044053 173 ----SNFSCKKIETILTFAT----IPP-SINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALK 243 (327)
Q Consensus 173 ----S~~~~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~ 243 (327)
|..+++++.++++... +.. .-+=++.||-.-..+.++.+++.|+.-+..+.-. +.++.++
T Consensus 122 GGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQS-----------f~d~vLk 190 (449)
T PRK09058 122 GGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQS-----------FNTQVRR 190 (449)
T ss_pred CCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCc-----------CCHHHHH
Confidence 2345678877776542 111 1233455565556889999999999888765443 2344555
Q ss_pred HHHHHcCCCHHHHHHHHHHhcC-C----EEeecC--CCHHHHHHhhc
Q 044053 244 EIAKAHGKTVAQVSLRWIVEQG-A----TVVVKS--LNLERMKQNLG 283 (327)
Q Consensus 244 ~ia~~~~~s~aq~al~w~l~~~-~----~vi~g~--~~~~~l~enl~ 283 (327)
.+.+.+...-+.-+++++.+.| . -.|.|. .+.+.++++++
T Consensus 191 ~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~ 237 (449)
T PRK09058 191 RAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLA 237 (449)
T ss_pred HhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHH
Confidence 5555444444444666666555 1 234452 35566665554
No 173
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=28.33 E-value=4e+02 Score=23.21 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=40.4
Q ss_pred CCEEeC-CCCcC--CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC-----C--ChhhHHHHHHHHHHHhCCCceeEE
Q 044053 55 YRHFDT-AAMYG--TEKALGEAIAEALRLGLVSSREQLFITSKLWCQN-----A--HRDHVIPALKKSLSALQMEYLDLY 124 (327)
Q Consensus 55 i~~~DT-A~~Yg--sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~-----~--~~~~i~~~le~SL~rL~~d~iDl~ 124 (327)
.+.+.. +..|+ +.+.+.+|.++ ..+++..+-|++..- . ..+.+.+.+-+.++-|| +.+..+
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~--------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~i 89 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQ--------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPI 89 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCT--------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhh--------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEE
Confidence 444433 45687 78888888764 568899999986421 1 23556456666999998 899999
Q ss_pred EeecCC
Q 044053 125 LVHLPI 130 (327)
Q Consensus 125 ~lH~p~ 130 (327)
++.-|-
T Consensus 90 L~Q~Pp 95 (230)
T PF01904_consen 90 LFQFPP 95 (230)
T ss_dssp EEE--T
T ss_pred EEEcCC
Confidence 999884
No 174
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=28.33 E-value=85 Score=27.15 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=27.4
Q ss_pred eeeecccCcccccHHHHHHHH---HcCCEEEEecCCCCCCccCCC
Q 044053 192 SINQVEMHPVWQQRKLIEFCK---AKGIIVTAYSPLGAVGKIYGS 233 (327)
Q Consensus 192 ~~~q~~~~~~~~~~~ll~~~~---~~gi~v~a~~pl~~~G~l~~~ 233 (327)
.+|.+.+.++..-..++.-+. +.|=.++.|+||...|.++..
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~ 152 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE 152 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc
Confidence 455666666555456666555 336668999999886777543
No 175
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=28.20 E-value=3.8e+02 Score=24.92 Aligned_cols=62 Identities=10% Similarity=0.023 Sum_probs=41.4
Q ss_pred HHHcCCccEEEeccccHHHHHHHHHhC-----CCCCeeeecccCcccccHHHHHHHHHcCCEEEEec
Q 044053 161 SQMLGLTKSIGLSNFSCKKIETILTFA-----TIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 161 l~~~Gkir~iGvS~~~~~~l~~~~~~~-----~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~ 222 (327)
.-+.|=+..||....+++++++.++.. +-++-+|-+.+.+.....+.++.|.+.++.++..+
T Consensus 23 VS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 23 VAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred HHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 445677888888888888887766433 23555554333221123678999999999998764
No 176
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=28.17 E-value=1.4e+02 Score=25.61 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCccEEEeccc-cHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEE
Q 044053 155 WEAMEESQMLGLTKSIGLSNF-SCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTA 220 (327)
Q Consensus 155 ~~~l~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a 220 (327)
++.++.++++-.=-.||+.+. +.++++++++..- .+.+ +|. -+++++++|+++||.++.
T Consensus 47 ~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA-~Fiv-----SP~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 47 LEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGA-QFIV-----SPG-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SEEE-----ESS---HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCC-CEEE-----CCC-CCHHHHHHHHHcCCcccC
Confidence 344444444322245888775 5888888888652 2222 221 247899999999999985
No 177
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=28.12 E-value=3.2e+02 Score=22.02 Aligned_cols=46 Identities=7% Similarity=0.099 Sum_probs=33.9
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC--CCceeEEEeecCCC
Q 044053 85 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQ--MEYLDLYLVHLPIS 131 (327)
Q Consensus 85 ~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~--~d~iDl~~lH~p~~ 131 (327)
.|=.+.|+-|++. ...+..+++.+.++++.+. ....|++++.....
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~ 93 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNS 93 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEecccc
Confidence 4666778888654 4456888888888888763 35689999998754
No 178
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=28.02 E-value=5.5e+02 Score=24.71 Aligned_cols=113 Identities=14% Similarity=0.059 Sum_probs=65.3
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCC
Q 044053 62 AMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPV 141 (327)
Q Consensus 62 ~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~ 141 (327)
-.||.|+.|-++|++..+.- +.+-++|.|-....- --+.+..-+++. ++++ ++++.+|.|+.....
T Consensus 66 ~V~Gg~~kL~~~I~~~~~~~---~p~~I~V~ttC~~~~-IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~------ 131 (427)
T cd01971 66 IVFGGEDRLRELIKSTLSII---DADLFVVLTGCIAEI-IGDDVGAVVSEF-QEGG---APIVYLETGGFKGNN------ 131 (427)
T ss_pred eEeCCHHHHHHHHHHHHHhC---CCCEEEEEcCCcHHH-hhcCHHHHHHHh-hhcC---CCEEEEECCCcCccc------
Confidence 46788888888888764432 445577777653321 124445444444 4443 688999988754320
Q ss_pred CCCCCCCCCHHHHHHHHHH-HH------HcCCccEEEecc-------ccHHHHHHHHHhCCCCCeee
Q 044053 142 PKEDLLPMDYRGVWEAMEE-SQ------MLGLTKSIGLSN-------FSCKKIETILTFATIPPSIN 194 (327)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~-l~------~~Gkir~iGvS~-------~~~~~l~~~~~~~~~~~~~~ 194 (327)
....+.++++|-+ +. +.+.|.-||..+ -+..++.++++..++++.++
T Consensus 132 ------~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 132 ------YAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred ------ccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 1123444444433 32 234588888643 24678899998887765444
No 179
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=27.97 E-value=1.6e+02 Score=26.82 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=77.8
Q ss_pred CChHHHHHHHHHHH-HcCCCEEeCCCCc----C-C-HHHHHHH---HHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHH
Q 044053 38 SDTDALKLAVLEAI-KLGYRHFDTAAMY----G-T-EKALGEA---IAEALRLGLVSSREQLFITSKLWCQNAHRDHVIP 107 (327)
Q Consensus 38 ~~~~~~~~~l~~A~-~~Gi~~~DTA~~Y----g-s-E~~lG~~---L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~ 107 (327)
.+.+.+.+.|++.+ ..+.+++|.-..- + + ..++-+. |+++-.+|. - =||-.-. +.-+-+..
T Consensus 117 fsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk--~---RfiGitg----ypldvl~~ 187 (342)
T KOG1576|consen 117 FSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGK--I---RFIGITG----YPLDVLTE 187 (342)
T ss_pred chHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCc--e---eEeeecc----cchHHHHH
Confidence 45677888888888 4588888863221 1 2 2233343 344322342 1 1222222 22233444
Q ss_pred HHHHHHHHhCCCceeEEE--eecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHH
Q 044053 108 ALKKSLSALQMEYLDLYL--VHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILT 185 (327)
Q Consensus 108 ~le~SL~rL~~d~iDl~~--lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~ 185 (327)
.. +-+..++|.++ .|.- ......+..++.++.+| +||.|-++-.+-- +.
T Consensus 188 ~a-----e~~~G~~dvvlsY~ry~-------------------l~d~tLl~~~~~~~sk~----vgVi~AsalsmgL-Lt 238 (342)
T KOG1576|consen 188 CA-----ERGKGRLDVVLSYCRYT-------------------LNDNTLLRYLKRLKSKG----VGVINASALSMGL-LT 238 (342)
T ss_pred HH-----hcCCCceeeehhhhhhc-------------------cccHHHHHHHHHHHhcC----ceEEehhhHHHHH-hh
Confidence 33 34567889887 5532 22456778888888665 7888876554433 33
Q ss_pred hCCCCCeeeecccCccccc-----HHHHHHHHHcCCEE
Q 044053 186 FATIPPSINQVEMHPVWQQ-----RKLIEFCKAKGIIV 218 (327)
Q Consensus 186 ~~~~~~~~~q~~~~~~~~~-----~~ll~~~~~~gi~v 218 (327)
..+.+ ++||..++ ....++|+++|+.+
T Consensus 239 ~~gp~------~wHPaS~Elk~~a~~aa~~Cq~rnv~l 270 (342)
T KOG1576|consen 239 NQGPP------PWHPASDELKEAAKAAAEYCQSRNVEL 270 (342)
T ss_pred cCCCC------CCCCCCHHHHHHHHHHHHHHHHcCccH
Confidence 33322 56777665 45688999999876
No 180
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=27.91 E-value=5.2e+02 Score=24.35 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=59.0
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HcCC---ccEEEecccc--HHHHHHHHHhCC-CCCeeee
Q 044053 123 LYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQ-MLGL---TKSIGLSNFS--CKKIETILTFAT-IPPSINQ 195 (327)
Q Consensus 123 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~Gk---ir~iGvS~~~--~~~l~~~~~~~~-~~~~~~q 195 (327)
.+-||.+++....... |... ...++++++++.++. +.|+ |+++=+..++ .++++++.+... +++.++-
T Consensus 218 aiSL~a~~~e~r~~l~-p~~~----~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnL 292 (355)
T TIGR00048 218 AISLHAPNDELRSSLM-PINK----KYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNL 292 (355)
T ss_pred EEEeCCCCHHHHHHhc-Cccc----CCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEE
Confidence 3679988653321100 1000 124788888887654 4453 4455454443 567666655443 4456777
Q ss_pred cccCccccc----------HHHHHHHHHcCCEEEEecCCCC
Q 044053 196 VEMHPVWQQ----------RKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 196 ~~~~~~~~~----------~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
++||++... ..+.++.+++|+.+......|.
T Consensus 293 IPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 293 IPWNPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred EecccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 888886421 3456667788999999888864
No 181
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=27.71 E-value=4.1e+02 Score=23.12 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=24.7
Q ss_pred cccCcceeeccccCCChHHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHHHHHHH
Q 044053 24 LNMPVIGLGCAVDKSDTDALKLAVLEAIKLGYRHFDTAAMYG-TEKALGEAIAE 76 (327)
Q Consensus 24 ~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~lG~~L~~ 76 (327)
..+|.++-|... +.+++ +.+++.|+..+..+...- +-..+.+..+.
T Consensus 70 ~~~pv~~~GGI~---s~~d~----~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~ 116 (243)
T cd04731 70 VFIPLTVGGGIR---SLEDA----RRLLRAGADKVSINSAAVENPELIREIAKR 116 (243)
T ss_pred CCCCEEEeCCCC---CHHHH----HHHHHcCCceEEECchhhhChHHHHHHHHH
Confidence 456666555554 33444 444557888777654433 43445555554
No 182
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=27.47 E-value=4.4e+02 Score=23.35 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CccEEEeccccHHHHHH
Q 044053 104 HVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLG-LTKSIGLSNFSCKKIET 182 (327)
Q Consensus 104 ~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-kir~iGvS~~~~~~l~~ 182 (327)
.-+..+-+.|.++|+++|++-+ |.. .+.-++.++.+.+.+ .++..+.+..+...++.
T Consensus 20 ~~k~~i~~~L~~~Gv~~iE~g~---p~~-------------------~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~ 77 (259)
T cd07939 20 EEKLAIARALDEAGVDEIEVGI---PAM-------------------GEEEREAIRAIVALGLPARLIVWCRAVKEDIEA 77 (259)
T ss_pred HHHHHHHHHHHHcCCCEEEEec---CCC-------------------CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHH
Confidence 3445555669999999999852 211 122345666776643 47777777777888887
Q ss_pred HHHhCCCCCeeeecccCcccc--------------cHHHHHHHHHcCCEEEEe
Q 044053 183 ILTFATIPPSINQVEMHPVWQ--------------QRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 183 ~~~~~~~~~~~~q~~~~~~~~--------------~~~ll~~~~~~gi~v~a~ 221 (327)
+.+. +++..-+-+..|..+. -.+.+++|+++|+.+...
T Consensus 78 a~~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 129 (259)
T cd07939 78 ALRC-GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVG 129 (259)
T ss_pred HHhC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 7764 3442222223333211 045788999999976533
No 183
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=27.13 E-value=6.9e+02 Score=25.50 Aligned_cols=209 Identities=11% Similarity=0.090 Sum_probs=119.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCC-------------HHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC------
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYGT-------------EKALGEAIAEALRLGLVSSREQLFITSKLWCQN------ 99 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~Ygs-------------E~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~------ 99 (327)
+++...++=+..+++|-+.+.|...+.| +++...+++-. ... ...+++|+--+++..
T Consensus 41 ~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lA--r~a--~~~~~~VagsiGP~g~~~~~~ 116 (612)
T PRK08645 41 HPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLA--REA--AGDDVYVAGTIGPIGGRGPLG 116 (612)
T ss_pred CHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHH--HHH--hcCCCeEEEeCCCCCCCCCCC
Confidence 4555666555667999999988865433 22222233211 111 113477888876532
Q ss_pred -CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CccEEEecccc-
Q 044053 100 -AHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLG-LTKSIGLSNFS- 176 (327)
Q Consensus 100 -~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-kir~iGvS~~~- 176 (327)
.+.+.+++......+.|.-.-+|++++--.. +..++..+++.+++.+ +=-.+.++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~-------------------~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~ 177 (612)
T PRK08645 117 DISLEEIRREFREQIDALLEEGVDGLLLETFY-------------------DLEELLLALEAAREKTDLPIIAQVAFHED 177 (612)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEccC-------------------CHHHHHHHHHHHHHhCCCcEEEEEEECCC
Confidence 3568888888888888866679999998552 3677777777777766 32234444321
Q ss_pred --------HHHHHHHHHhCCCCCeeeecccCc-ccccHHHHHHHHH-cCCEEEEecCCCCCCccCCCCcccChHHHHHHH
Q 044053 177 --------CKKIETILTFATIPPSINQVEMHP-VWQQRKLIEFCKA-KGIIVTAYSPLGAVGKIYGSNQVLENEALKEIA 246 (327)
Q Consensus 177 --------~~~l~~~~~~~~~~~~~~q~~~~~-~~~~~~ll~~~~~-~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia 246 (327)
...+...++. .++..+-+++.. ...-..+++.... .++.+++|--- |....... ...
T Consensus 178 g~l~~G~~~~~~~~~~~~--~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNa---G~~~~~~~----~~~---- 244 (612)
T PRK08645 178 GVTQNGTSLEEALKELVA--AGADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNA---GLPEYVDG----RYV---- 244 (612)
T ss_pred CeeCCCCCHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECC---CCCCCCCC----ccc----
Confidence 2233333332 346677777764 3222445544444 36677776332 33210000 000
Q ss_pred HHcCC---CHHHHHHHHHHhcCCEEeecC--CCHHHHHHhhcccc
Q 044053 247 KAHGK---TVAQVSLRWIVEQGATVVVKS--LNLERMKQNLGIFD 286 (327)
Q Consensus 247 ~~~~~---s~aq~al~w~l~~~~~vi~g~--~~~~~l~enl~a~~ 286 (327)
+.. ..++.+..|.-. |+.+|=|+ ++++|+++-.++++
T Consensus 245 --~~~~p~~~~~~~~~~~~~-Ga~iiGGCCgt~P~hI~~la~~l~ 286 (612)
T PRK08645 245 --YSANPEYFAEYALEFVEQ-GVRLIGGCCGTTPEHIRAMARALK 286 (612)
T ss_pred --cCCCHHHHHHHHHHHHHh-CCCEEeEecCCCHHHHHHHHHHhc
Confidence 111 146677888654 88888776 78999988766554
No 184
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=27.11 E-value=5.6e+02 Score=24.52 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=52.3
Q ss_pred ceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCC-CCCeeeeccc
Q 044053 120 YLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFAT-IPPSINQVEM 198 (327)
Q Consensus 120 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~-~~~~~~q~~~ 198 (327)
.+|++.+|.-... ..++..++.++..+.-.+- +=+...+++.++++++.+. -.|.+.-..-
T Consensus 69 ~~D~Ialr~~S~D-----------------Pae~fa~~vk~V~~a~~~P-LIL~~~D~evl~aale~~~~~kpLL~aAt~ 130 (386)
T PF03599_consen 69 GADMIALRLESGD-----------------PAEEFAKAVKKVAEAVDVP-LILCGCDPEVLKAALEACAGKKPLLYAATE 130 (386)
T ss_dssp E-SEEEEE-GGGS-----------------THHHHHHHHHHHHHC-SSE-EEEESSHHHHHHHHHHHTTTS--EEEEEBT
T ss_pred cccEEEEEecCCC-----------------hHHHHHHHHHHHHHhcCCC-EEEEeCCHHHHHHHHHHhCcCCcEEeEcCH
Confidence 5889999976321 0366666677666654433 4444459999999999876 3443332221
Q ss_pred CcccccHHHHHHHHHcCCEEEEecCCC
Q 044053 199 HPVWQQRKLIEFCKAKGIIVTAYSPLG 225 (327)
Q Consensus 199 ~~~~~~~~ll~~~~~~gi~v~a~~pl~ 225 (327)
.. -+++.+.|+++|..+++.+|..
T Consensus 131 eN---yk~m~~lA~~y~~pl~v~sp~D 154 (386)
T PF03599_consen 131 EN---YKAMAALAKEYGHPLIVSSPID 154 (386)
T ss_dssp TT---HHHHHHHHHHCT-EEEEE-SSC
T ss_pred HH---HHHHHHHHHHcCCeEEEEeccc
Confidence 11 1789999999999999999884
No 185
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.00 E-value=5e+02 Score=24.53 Aligned_cols=77 Identities=13% Similarity=0.232 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHH-HcCC---ccEEEecccc--HHHHHHHHHhCC-CCCeeeecccCcccc------c----HHHHHHHH
Q 044053 150 DYRGVWEAMEESQ-MLGL---TKSIGLSNFS--CKKIETILTFAT-IPPSINQVEMHPVWQ------Q----RKLIEFCK 212 (327)
Q Consensus 150 ~~~~~~~~l~~l~-~~Gk---ir~iGvS~~~--~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~ll~~~~ 212 (327)
+++++++++.+.. +.|+ |+++=+..++ .++++++.+... .+..++=++||++.. . ..+.+..+
T Consensus 245 ~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ps~e~i~~f~~~l~ 324 (356)
T PRK14462 245 NIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSLEDMIKFQDYLN 324 (356)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4678888887544 5565 6677666554 677776666543 455688889998742 1 33556677
Q ss_pred HcCCEEEEecCCCC
Q 044053 213 AKGIIVTAYSPLGA 226 (327)
Q Consensus 213 ~~gi~v~a~~pl~~ 226 (327)
++||.+......|.
T Consensus 325 ~~gi~vtvR~~~G~ 338 (356)
T PRK14462 325 SKGLLCTIRESKGL 338 (356)
T ss_pred HCCCcEEEeCCCCC
Confidence 88999998887764
No 186
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=26.96 E-value=3.6e+02 Score=22.26 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc-------HHHHHHHHHcCCEEEEecC
Q 044053 151 YRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ-------RKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 151 ~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-------~~ll~~~~~~gi~v~a~~p 223 (327)
-+++++.--+=-+++-|++|=|.+-+.....++++...-..-++-+.|+.-+.+ .++-+..+++|..|+.-|-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 455666444444556688888888777777777776554433444455554432 6788999999999987654
Q ss_pred CCCCCccCCCCcccChHHHHHHHHHcC-CCHHHH---HHHHHHhcC
Q 044053 224 LGAVGKIYGSNQVLENEALKEIAKAHG-KTVAQV---SLRWIVEQG 265 (327)
Q Consensus 224 l~~~G~l~~~~~~~~~~~l~~ia~~~~-~s~aq~---al~w~l~~~ 265 (327)
.-+ |. -+.|.+++| .+|.++ .|| ...+|
T Consensus 92 alS-g~------------eRsis~kfGG~~p~eiiAetLR-~fg~G 123 (186)
T COG1751 92 ALS-GV------------ERSISRKFGGYSPLEIIAETLR-MFGQG 123 (186)
T ss_pred hhh-cc------------hhhhhhhcCCcchHHHHHHHHH-HhcCC
Confidence 433 32 133444553 566554 455 55677
No 187
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=26.92 E-value=4.2e+02 Score=23.03 Aligned_cols=33 Identities=6% Similarity=-0.153 Sum_probs=24.6
Q ss_pred CCCeeeecccCccccc--HHHHHHHHHcCCEEEEe
Q 044053 189 IPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 189 ~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~ 221 (327)
..+++.=-+||.+++. .++.+..++.|+.|+..
T Consensus 184 ~~Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 184 PAIVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred ceEEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 3455566678887775 67899999999998854
No 188
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=26.71 E-value=2.7e+02 Score=25.03 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=33.8
Q ss_pred CceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHH
Q 044053 119 EYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETI 183 (327)
Q Consensus 119 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~ 183 (327)
..-|+++|.-|....+ .....++++-|.+|+++|+ .|=+.+|+...+.+.
T Consensus 156 ~~p~lllLDEP~~gvD-------------~~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~ 205 (254)
T COG1121 156 QNPDLLLLDEPFTGVD-------------VAGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAY 205 (254)
T ss_pred cCCCEEEecCCcccCC-------------HHHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhh
Confidence 4567777777644321 2336678899999999976 566777876665443
No 189
>PRK06683 hypothetical protein; Provisional
Probab=26.55 E-value=2.4e+02 Score=20.41 Aligned_cols=57 Identities=7% Similarity=0.009 Sum_probs=30.6
Q ss_pred HHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEec
Q 044053 159 EESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 159 ~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~ 222 (327)
+.+++.||+- + ...+..+.++......+++--....- ....+.++|+..+|+++-+.
T Consensus 4 ~~~~~agk~v-~-----G~~~v~kaik~gkaklViiA~Da~~~-~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 4 QKVSNAENVV-V-----GHKRTLEAIKNGIVKEVVIAEDADMR-LTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred HHHHhCCCEE-E-----cHHHHHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHhcCCCEEEEC
Confidence 4555666532 1 23455555555554444443332221 12567788888888887654
No 190
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=26.26 E-value=6.3e+02 Score=25.17 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC----------CccEEEecc
Q 044053 105 VIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLG----------LTKSIGLSN 174 (327)
Q Consensus 105 i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G----------kir~iGvS~ 174 (327)
-+..+-+.|.++|+|+|.+-+ |.. ..+-+++++.+.+.+ ..+-.+++.
T Consensus 107 eKi~Ia~~L~~~GVd~IEvG~---Pa~-------------------s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R 164 (503)
T PLN03228 107 QKLEIARQLAKLRVDIMEVGF---PGS-------------------SEEEFEAVKTIAKTVGNEVDEETGYVPVICGIAR 164 (503)
T ss_pred HHHHHHHHHHHcCCCEEEEeC---CCC-------------------CHHHHHHHHHHHHhcccccccccccceEEeeecc
Confidence 345566779999999998843 422 122234444444332 123346666
Q ss_pred ccHHHHHHHHHhC---CCCCeeeecccCccccc--------------HHHHHHHHHcCCEEEEecC
Q 044053 175 FSCKKIETILTFA---TIPPSINQVEMHPVWQQ--------------RKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 175 ~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~--------------~~ll~~~~~~gi~v~a~~p 223 (327)
.....++.+++.. +.+-+.+-+..+..+.+ .+.+.+++++|...+.+++
T Consensus 165 ~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 165 CKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred cCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 6666777776642 22212222233332211 4678899999986555554
No 191
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=26.24 E-value=4.3e+02 Score=22.82 Aligned_cols=164 Identities=10% Similarity=0.114 Sum_probs=83.9
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCC-CCcC--CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTA-AMYG--TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLS 114 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA-~~Yg--sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~ 114 (327)
.+.++..++++...+.||..|+.. +..+ ..+.+.+..+.. +...+...+. ...+.++..++.. .
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~-----~~~~~i~~~~~~~-~ 77 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL-------PNARLQALCR-----ANEEDIERAVEAA-K 77 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH-------HSSEEEEEEE-----SCHHHHHHHHHHH-H
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh-------cccccceeee-----ehHHHHHHHHHhh-H
Confidence 356788889999889999999999 4443 233344333322 2223322222 2345666666533 5
Q ss_pred HhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHcCCccEEEecc---ccHHHHHHHHHhC
Q 044053 115 ALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMD----YRGVWEAMEESQMLGLTKSIGLSN---FSCKKIETILTFA 187 (327)
Q Consensus 115 rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~l~~~Gkir~iGvS~---~~~~~l~~~~~~~ 187 (327)
..|.|.+.++.-=++.... ... ..+ .+.+.+..+.+|+.|.--.+++-. ++++.+.++.+..
T Consensus 78 ~~g~~~i~i~~~~s~~~~~----------~~~-~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 146 (237)
T PF00682_consen 78 EAGIDIIRIFISVSDLHIR----------KNL-NKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEAL 146 (237)
T ss_dssp HTTSSEEEEEEETSHHHHH----------HHT-CSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHH
T ss_pred hccCCEEEecCcccHHHHH----------Hhh-cCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHH
Confidence 6788888866322110000 000 011 445566777788999888888744 4455555444332
Q ss_pred C-CCCeeeecc--cCccccc--HHHHHHHHHc----CCEEEEecCCC
Q 044053 188 T-IPPSINQVE--MHPVWQQ--RKLIEFCKAK----GIIVTAYSPLG 225 (327)
Q Consensus 188 ~-~~~~~~q~~--~~~~~~~--~~ll~~~~~~----gi~v~a~~pl~ 225 (327)
. ..+..+.+. +....+. .+++...+++ .|++.++.-++
T Consensus 147 ~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 147 AEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp HHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred HHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 1 112222221 2222232 4566665542 35666666554
No 192
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=26.06 E-value=3.2e+02 Score=21.26 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=41.2
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC--CceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 044053 85 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQM--EYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQ 162 (327)
Q Consensus 85 ~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 162 (327)
.|=.+.|+-|+......+..+++.+.+.++.... .-.|++++..+... ..+..++.+.|..|.
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~---------------~~~~~~l~~~l~~ll 108 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFD---------------RATAKQAVAELAQLM 108 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcc---------------cCCHHHHHHHHHHHH
Confidence 4555677777555445567888888888865542 35799999988543 234566666666654
Q ss_pred H
Q 044053 163 M 163 (327)
Q Consensus 163 ~ 163 (327)
+
T Consensus 109 ~ 109 (120)
T PRK04390 109 A 109 (120)
T ss_pred H
Confidence 3
No 193
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=26.02 E-value=4.4e+02 Score=22.86 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=49.2
Q ss_pred HHhCCCceeEEEee-cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecc-ccHHHHHHHHHhCCCC
Q 044053 114 SALQMEYLDLYLVH-LPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGL-TKSIGLSN-FSCKKIETILTFATIP 190 (327)
Q Consensus 114 ~rL~~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk-ir~iGvS~-~~~~~l~~~~~~~~~~ 190 (327)
..+|.||+=+.+.- +|.. .+. +...++.+... ++.+||.. .+.+.+.++++.. .
T Consensus 19 ~~~gad~iG~If~~~SpR~-----------------Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~--~ 75 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRY-----------------VSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEEL--G 75 (208)
T ss_pred HHcCCCEEEEEEcCCCCCc-----------------CCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhc--C
Confidence 45789999877665 3321 122 33444444444 88999874 5578888888765 4
Q ss_pred CeeeecccCcccccHHHHHHHHHcC-CEEE
Q 044053 191 PSINQVEMHPVWQQRKLIEFCKAKG-IIVT 219 (327)
Q Consensus 191 ~~~~q~~~~~~~~~~~ll~~~~~~g-i~v~ 219 (327)
+.++|++-.. ..+.++..++.. +.|+
T Consensus 76 ld~VQlHG~e---~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 76 LDAVQLHGDE---DPEYIDQLKEELGVPVI 102 (208)
T ss_pred CCEEEECCCC---CHHHHHHHHhhcCCceE
Confidence 5688877542 255666666553 5443
No 194
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=25.91 E-value=4.6e+02 Score=23.30 Aligned_cols=119 Identities=15% Similarity=0.105 Sum_probs=65.6
Q ss_pred cHHHHHHHHHhCCCCCeeeecccCccccc--HHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCH
Q 044053 176 SCKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTV 253 (327)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~ 253 (327)
+.+.+..++..-++..++. --|||-.+ ....+.|++.||.++-|.--.. .......... ++.
T Consensus 53 ~~~~l~~~l~~~~i~~VID--ATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~--~~~~~~~~~~------------v~s 116 (248)
T PRK08057 53 GAEGLAAYLREEGIDLVID--ATHPYAAQISANAAAACRALGIPYLRLERPSW--LPQPGDRWIE------------VDD 116 (248)
T ss_pred CHHHHHHHHHHCCCCEEEE--CCCccHHHHHHHHHHHHHHhCCcEEEEeCCCc--CCCCCCCEEE------------ECC
Confidence 5566666666555554443 23455444 6688999999999998864321 0000001110 112
Q ss_pred HHHHHHHHHhcC-CEEeecCCCHHHHHHhhcccc---cccCHHHHHHHhcCCCCCccCCccccCCCCCc
Q 044053 254 AQVSLRWIVEQG-ATVVVKSLNLERMKQNLGIFD---WKLTDDDYDKINQIPQHRLIPSDFWVSPQGPF 318 (327)
Q Consensus 254 aq~al~w~l~~~-~~vi~g~~~~~~l~enl~a~~---~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 318 (327)
.+-|.+++.+.+ +..-.|+++...+........ --|+..+.- ..+++..+.+.+|||
T Consensus 117 ~~~a~~~l~~~~~vllttGsk~l~~f~~~~~~~r~~~RvLP~~~s~--------~g~~~~~iiam~gPf 177 (248)
T PRK08057 117 IEEAAEALAPFRRVLLTTGRQPLAHFAAILPEHRLLVRVLPPPEVL--------LGLPRAEIIALRGPF 177 (248)
T ss_pred HHHHHHHhhccCCEEEecCcchHHHHhhcCCCCEEEEEECCCchhc--------CCCChhhEEEeeCCC
Confidence 233555555444 566788899888875332111 134443321 455677788889999
No 195
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=25.79 E-value=4.3e+02 Score=24.57 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecc-----ccHHHHHHHHHhCC---CCCeee-ec--cc-----CcccccHHHHHHHH
Q 044053 149 MDYRGVWEAMEESQMLGLTKSIGLSN-----FSCKKIETILTFAT---IPPSIN-QV--EM-----HPVWQQRKLIEFCK 212 (327)
Q Consensus 149 ~~~~~~~~~l~~l~~~Gkir~iGvS~-----~~~~~l~~~~~~~~---~~~~~~-q~--~~-----~~~~~~~~ll~~~~ 212 (327)
.+.+++.+.++++++.| ++.|.+.. ...+.+.++++..+ ....+. .. +. +.-....+.+...+
T Consensus 70 ls~eeI~e~~~~~~~~G-~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAG-ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56899999999999998 66677662 23444444433321 111111 00 00 11122377888888
Q ss_pred HcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHH--HHHHHHHHhcC----CEEeecC-CCHHHHHHhhcc
Q 044053 213 AKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVA--QVSLRWIVEQG----ATVVVKS-LNLERMKQNLGI 284 (327)
Q Consensus 213 ~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~a--q~al~w~l~~~----~~vi~g~-~~~~~l~enl~a 284 (327)
+.|+.-+. .. | .+.+.++..+.++.. +.+.. --+++++...| +..|+|. .+.++..+.+..
T Consensus 149 eAGl~~i~----~~-~-----~E~~~~~v~~~i~~~-~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~ 216 (343)
T TIGR03551 149 EAGLDSMP----GT-A-----AEILDDEVRKVICPD-KLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLI 216 (343)
T ss_pred HhCccccc----Cc-c-----hhhcCHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHH
Confidence 88887553 11 1 122223333334322 12222 23566666666 4567774 567777776644
No 196
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.76 E-value=3.1e+02 Score=21.03 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=14.2
Q ss_pred cccHHHHHHHHHcCCEEEEe
Q 044053 202 WQQRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 202 ~~~~~ll~~~~~~gi~v~a~ 221 (327)
..+++++++|+++|+.++.-
T Consensus 89 ~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 89 AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp S--HHHHHHHHHTT-EEEES
T ss_pred hHHHHHHHHHHHcCCEEEeC
Confidence 34578999999999998853
No 197
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=25.60 E-value=4.2e+02 Score=22.49 Aligned_cols=106 Identities=12% Similarity=0.180 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCCCCeeeecccCcccccHH---HHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCC---
Q 044053 178 KKIETILTFATIPPSINQVEMHPVWQQRK---LIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGK--- 251 (327)
Q Consensus 178 ~~l~~~~~~~~~~~~~~q~~~~~~~~~~~---ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~--- 251 (327)
+.+++..+..+++..++.+..+.-.-.+. .+...++.|+..++.+.... ......+..+|++.|+
T Consensus 48 e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~vv~G~i~s---------d~~~~~~e~~~~~~gl~~~ 118 (194)
T cd01994 48 ELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDAVVFGAILS---------EYQRTRVERVCERLGLEPL 118 (194)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEECcccc---------HHHHHHHHHHHHHcCCEEE
Confidence 34455555556665555443211001122 23333334788888766654 1235678889998764
Q ss_pred ------CHHHHHHHHHHhcC-CEEeecCCCHHHHHHhhcccccccCHHHHHH
Q 044053 252 ------TVAQVSLRWIVEQG-ATVVVKSLNLERMKQNLGIFDWKLTDDDYDK 296 (327)
Q Consensus 252 ------s~aq~al~w~l~~~-~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~ 296 (327)
++.+ .++=.+..| .++|++.+. ..|.+ .-+...++++.++.
T Consensus 119 ~PLW~~~~~~-ll~e~~~~g~~~~iv~v~~-~~L~~--~~lG~~~~~~~~~~ 166 (194)
T cd01994 119 APLWGRDQEE-LLREMIEAGFKAIIIKVAA-EGLDE--SWLGREIDEMFIEL 166 (194)
T ss_pred ecccCCCHHH-HHHHHHHcCCeEEEEEecc-CCCCH--HHCCCCccHhhHHH
Confidence 5555 455555778 455555443 23333 22344677766653
No 198
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.57 E-value=1.6e+02 Score=22.40 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCCcEEEEecc-CC-----------------C
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYG--TEKALGEAIAEALRLGLVSSREQLFITSKL-WC-----------------Q 98 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg--sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~-~~-----------------~ 98 (327)
|.....+.---.+++|--|+-|-..|. .|..+---|-+ ..+++++++|+ |. .
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld--------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d 89 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD--------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTD 89 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC--------chhhccccceEEEEccCCCCCCCCceeeeccC
Confidence 344445555556799999999999996 56554433331 45689999997 21 1
Q ss_pred CCChhhHHHHHHHHHH
Q 044053 99 NAHRDHVIPALKKSLS 114 (327)
Q Consensus 99 ~~~~~~i~~~le~SL~ 114 (327)
+-.-..++..+|.-|.
T Consensus 90 ~e~g~~vr~~IE~~Lg 105 (117)
T COG3215 90 GENGLKVRNQIETLLG 105 (117)
T ss_pred CCchhhHHHHHHHHHH
Confidence 1112478888888774
No 199
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=25.41 E-value=1.4e+02 Score=24.07 Aligned_cols=121 Identities=13% Similarity=0.197 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccC---cccccHHHHHHHHHcCCEE-EEecCCC-CCCc
Q 044053 155 WEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMH---PVWQQRKLIEFCKAKGIIV-TAYSPLG-AVGK 229 (327)
Q Consensus 155 ~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~---~~~~~~~ll~~~~~~gi~v-~a~~pl~-~~G~ 229 (327)
...+...++ +..-|.|.-.+...+..++...+++ ++.+++. ++.-....+..|.++|+.+ +.|+|+- ..|
T Consensus 15 ~~~~~~~~~--~~divav~p~~~~~~~~a~~~~~vD--iIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l~~~~- 89 (150)
T PF01876_consen 15 RRSLSKFRK--KYDIVAVRPGSEKAFRAACSDPRVD--IITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLLRSDG- 89 (150)
T ss_dssp HHHHHHTTT----SEEEEE-S-HHHHHHHHHTT--S--EEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHHS-H-
T ss_pred HHHhhcccC--CceEEEEEcCCHHHHHHHHhcCCCC--EEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhhccCc-
Confidence 344444333 5667788888888888888876554 5555552 4444578999999999998 7777775 200
Q ss_pred cCCCCcccChHHHHHHHHHcCCCHHHHHHHHHHhcCCEEeecCCCHHHHHHhhcccc----cccCHHHHH
Q 044053 230 IYGSNQVLENEALKEIAKAHGKTVAQVSLRWIVEQGATVVVKSLNLERMKQNLGIFD----WKLTDDDYD 295 (327)
Q Consensus 230 l~~~~~~~~~~~l~~ia~~~~~s~aq~al~w~l~~~~~vi~g~~~~~~l~enl~a~~----~~L~~~~~~ 295 (327)
..+..- .+-.+..+++....+.++-.|++++-+++.=....+ +-+++++..
T Consensus 90 ---------~~r~~~------~~~~~~l~~~~~~~~iiiSSgA~~~~elr~P~dv~~l~~~lGl~~~~a~ 144 (150)
T PF01876_consen 90 ---------SNRRNF------ISNARRLIRLTKKKNIIISSGASSPLELRSPRDVINLLALLGLSEEEAK 144 (150)
T ss_dssp ---------HHHHHH------HHHHHHHHHHHHH--EEEE---SSGGG---HHHHHHHHHHTT--HHHHH
T ss_pred ---------HHHHHH------HHHHHHHHHHhCCCCEEEEcCCCChhhCcCHHHHHHHHHHhCCCHHHHH
Confidence 111111 223456788887777777788887777764333322 245555543
No 200
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=25.40 E-value=3.3e+02 Score=21.20 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=44.5
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC---CceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 044053 85 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQM---EYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEES 161 (327)
Q Consensus 85 ~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 161 (327)
.|=.+.|+-|++.....+..+++.+.+..+.+.. ...|++++-.+... ..+..++.+.|..|
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~---------------~~~~~~l~~~l~~l 111 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAA---------------ECNYEQFLQELEQL 111 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcc---------------cCCHHHHHHHHHHH
Confidence 4545666666555455678888888888887642 46899999988543 24577788887776
Q ss_pred HHc
Q 044053 162 QML 164 (327)
Q Consensus 162 ~~~ 164 (327)
.+.
T Consensus 112 l~k 114 (122)
T PRK03031 112 LIQ 114 (122)
T ss_pred HHH
Confidence 544
No 201
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=25.33 E-value=2.3e+02 Score=27.04 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc---HHHHHHHHHcC-CEEEEecCCCC
Q 044053 151 YRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKG-IIVTAYSPLGA 226 (327)
Q Consensus 151 ~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~g-i~v~a~~pl~~ 226 (327)
..++.+.++++....-|...=+-..+.+.++++++. +.+.++...+-||...- ..+.+.|+++| +.++.=..++.
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc
Confidence 466788888755555555444445567888888765 55667788888887654 67899999999 99999888876
Q ss_pred CCcc
Q 044053 227 VGKI 230 (327)
Q Consensus 227 ~G~l 230 (327)
+.+
T Consensus 183 -p~~ 185 (386)
T PF01053_consen 183 -PYN 185 (386)
T ss_dssp -TTT
T ss_pred -eee
Confidence 443
No 202
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=25.25 E-value=2.5e+02 Score=21.36 Aligned_cols=53 Identities=19% Similarity=0.096 Sum_probs=30.2
Q ss_pred eccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCC
Q 044053 172 LSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 172 vS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 224 (327)
.+..+.+++..++........++=.--+.....+++.++++++||++..+..-
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 34455666666665431222222222222233478899999999999887543
No 203
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=25.06 E-value=3.8e+02 Score=25.10 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=38.6
Q ss_pred ccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc---HHHHHHHHHcCCEEEEecCCC
Q 044053 167 TKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLG 225 (327)
Q Consensus 167 ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~ 225 (327)
++..-+...+.+.+++++.. +.+.+++..+.||.... .++.+.|+++|+.++.=..++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 44444444567777776643 34455666677876443 678999999999998766664
No 204
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=24.90 E-value=1.8e+02 Score=27.24 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCEEEEecCC
Q 044053 205 RKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 205 ~~ll~~~~~~gi~v~a~~pl 224 (327)
.++.+.|+++||.+-.|-..
T Consensus 141 ~El~~A~rk~Glk~G~Y~S~ 160 (346)
T PF01120_consen 141 GELADACRKYGLKFGLYYSP 160 (346)
T ss_dssp HHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHHcCCeEEEEecc
Confidence 78999999999999776544
No 205
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=24.83 E-value=5.8e+02 Score=23.84 Aligned_cols=137 Identities=11% Similarity=0.152 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHH
Q 044053 101 HRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKI 180 (327)
Q Consensus 101 ~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l 180 (327)
+++.+.+.+.+. ...|..++.+..-+.|+ ...+.+.+.++.+++.. -.+-+..+++.++
T Consensus 80 ~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~------------------~~~~~~~e~i~~Ik~~~--p~i~i~~~~~~ei 138 (351)
T TIGR03700 80 SLEEIVARVKEA-YAPGATEVHIVGGLHPN------------------LPFEWYLDMIRTLKEAY--PDLHVKAFTAVEI 138 (351)
T ss_pred CHHHHHHHHHHH-HHCCCcEEEEecCCCCC------------------CCHHHHHHHHHHHHHHC--CCceEEeCCHHHH
Confidence 456666666543 45777777776444431 22556667777777664 2344444555555
Q ss_pred HHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHHH--HHH
Q 044053 181 ETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQ--VSL 258 (327)
Q Consensus 181 ~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq--~al 258 (327)
..+....+. ..++.+...++.|+..+... | .+...++.+..++.. +.+..+ -++
T Consensus 139 ~~~~~~~g~-------------~~~e~l~~LkeAGld~~~~~-----g-----~E~~~~~v~~~i~~~-~~~~~~~l~~i 194 (351)
T TIGR03700 139 HHFSKISGL-------------PTEEVLDELKEAGLDSMPGG-----G-----AEIFAEEVRQQICPE-KISAERWLEIH 194 (351)
T ss_pred HHHHHHcCC-------------CHHHHHHHHHHcCCCcCCCC-----c-----ccccCHHHHhhcCCC-CCCHHHHHHHH
Confidence 443332221 13567777888777655311 1 122233444444443 244455 277
Q ss_pred HHHHhcC----CEEeecCC-CHHHHHHhh
Q 044053 259 RWIVEQG----ATVVVKSL-NLERMKQNL 282 (327)
Q Consensus 259 ~w~l~~~----~~vi~g~~-~~~~l~enl 282 (327)
+++-..| +..++|.- +.++..+.+
T Consensus 195 ~~a~~~Gi~~~sg~i~GlgEt~edrv~~l 223 (351)
T TIGR03700 195 RTAHELGLKTNATMLYGHIETPAHRVDHM 223 (351)
T ss_pred HHHHHcCCCcceEEEeeCCCCHHHHHHHH
Confidence 7777776 45677863 455544444
No 206
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.80 E-value=4.8e+02 Score=22.93 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCccEEEeccc-cHHHHHHHHHhCCCCCeeeecccC-cccccHHHHHHHHHcCCEE
Q 044053 155 WEAMEESQMLGLTKSIGLSNF-SCKKIETILTFATIPPSINQVEMH-PVWQQRKLIEFCKAKGIIV 218 (327)
Q Consensus 155 ~~~l~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~~~q~~~~-~~~~~~~ll~~~~~~gi~v 218 (327)
|+.+.++++.-.+.-|..... +.+.+.++++..++.-+++---++ .-..-.++.+.|++.||.+
T Consensus 186 ~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 186 LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 455556665545565554433 466777776654433222211111 1111266777888777754
No 207
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=24.65 E-value=3.6e+02 Score=21.39 Aligned_cols=63 Identities=14% Similarity=0.063 Sum_probs=42.5
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC----CceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 044053 85 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQM----EYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEE 160 (327)
Q Consensus 85 ~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~----d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (327)
.|=.+.|+-|++. ......+++.+.++++.+.. ...|++++-.+... ..+..++.+.|+.
T Consensus 47 ~RvG~~VSKKvG~-AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~---------------~~~~~~l~~~L~~ 110 (129)
T PRK01313 47 PRVGFTVTKKNGN-AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDAL---------------NAPFSQLTEELSR 110 (129)
T ss_pred cEEEEEEecccCc-chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccc---------------cCCHHHHHHHHHH
Confidence 4555667777654 44567888888888887653 56899999988543 2346666666666
Q ss_pred HHH
Q 044053 161 SQM 163 (327)
Q Consensus 161 l~~ 163 (327)
+.+
T Consensus 111 ~l~ 113 (129)
T PRK01313 111 RIE 113 (129)
T ss_pred HHH
Confidence 544
No 208
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=24.62 E-value=5.9e+02 Score=23.90 Aligned_cols=122 Identities=12% Similarity=0.114 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHHHc---CCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccC--CCCCChhhHHHHHHHHH
Q 044053 39 DTDALKLAVLEAIKL---GYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLW--CQNAHRDHVIPALKKSL 113 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~---Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~--~~~~~~~~i~~~le~SL 113 (327)
+.++..+++....+. =+-.+|..+..++- -..|.+.+ + .+.-++|.+|.- +.....+.+.+.+.+.+
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~--~---~~piilV~NK~DLl~k~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFV--G---GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA 120 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHh--C---CCCEEEEEEchhhCCCCCCHHHHHHHHHHHH
Confidence 455566655555422 23456866555520 01122211 1 455688999973 22233455666666667
Q ss_pred HHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHH-HHHHH
Q 044053 114 SALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKI-ETILT 185 (327)
Q Consensus 114 ~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l-~~~~~ 185 (327)
+.+|....+++.+-.-. ....+++++.+.++.+.+.|-.+|.+|..-..+ ..++.
T Consensus 121 k~~g~~~~~i~~vSAk~-----------------g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~ 176 (360)
T TIGR03597 121 KELGLKPVDIILVSAKK-----------------GNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLK 176 (360)
T ss_pred HHcCCCcCcEEEecCCC-----------------CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHh
Confidence 77775434555543221 134788888888887667899999999986554 44443
No 209
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=24.58 E-value=3.8e+02 Score=23.54 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=43.7
Q ss_pred cHHHHHHHHHhCCCCCeee--ecccCccccc-----HHHHHHHHHcCCEEEEecCCCCCCccCCCCcc-----cChHHHH
Q 044053 176 SCKKIETILTFATIPPSIN--QVEMHPVWQQ-----RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQV-----LENEALK 243 (327)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~--q~~~~~~~~~-----~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~-----~~~~~l~ 243 (327)
++.+++.+.+.+++.++.+ -.+||.+..+ .++.++++.-|-.-+.+.|+.. |-..+.... ..-.+++
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd-~s~~~~~vr~~~lv~AlkaLk 128 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLND-GSWPGTAVRREDLVEALKALK 128 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccC-CCCCCcccchHHHHHHHHHhh
Confidence 3556666666666443222 1245555443 6799999999999999999976 543221110 1124556
Q ss_pred HHHHHcCC
Q 044053 244 EIAKAHGK 251 (327)
Q Consensus 244 ~ia~~~~~ 251 (327)
.+-+++|+
T Consensus 129 pil~~~gi 136 (272)
T COG4130 129 PILDEYGI 136 (272)
T ss_pred HHHHHhCc
Confidence 66666654
No 210
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=24.56 E-value=3.2e+02 Score=24.82 Aligned_cols=80 Identities=14% Similarity=0.146 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCCEEeCCC---------CcC--CH-------HHHHHHHHHHHhcCCCCCCCcEEEEeccCCC----
Q 044053 41 DALKLAVLEAIKLGYRHFDTAA---------MYG--TE-------KALGEAIAEALRLGLVSSREQLFITSKLWCQ---- 98 (327)
Q Consensus 41 ~~~~~~l~~A~~~Gi~~~DTA~---------~Yg--sE-------~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~---- 98 (327)
+...++|+.-.+.||++|=-+. .++ -+ ..+|+..++. .+.++.--...
T Consensus 45 ~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~----------~iRls~HP~qf~vLn 114 (275)
T PF03851_consen 45 EDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKEN----------GIRLSMHPDQFTVLN 114 (275)
T ss_dssp HHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHT----------T-EEEE---TT--TT
T ss_pred HHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHHc----------CCeEEecCCcceeCC
Confidence 4567788888899999995443 222 11 2355555543 35555553211
Q ss_pred CCChhhHHHHHHH------HHHHhCCCce--eEEEeecCC
Q 044053 99 NAHRDHVIPALKK------SLSALQMEYL--DLYLVHLPI 130 (327)
Q Consensus 99 ~~~~~~i~~~le~------SL~rL~~d~i--Dl~~lH~p~ 130 (327)
.-.++.+.+++.+ -|+.||.+.- ..+.||--.
T Consensus 115 Sp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG 154 (275)
T PF03851_consen 115 SPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGG 154 (275)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCC
Confidence 1235666666643 4788998887 889999654
No 211
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.54 E-value=69 Score=28.46 Aligned_cols=19 Identities=26% Similarity=0.127 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHHcCCC
Q 044053 38 SDTDALKLAVLEAIKLGYR 56 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~ 56 (327)
.+++++.+++..|+.+||-
T Consensus 183 lt~eea~~Lv~eAi~AGi~ 201 (271)
T KOG0173|consen 183 LTKEEAIKLVCEAIAAGIF 201 (271)
T ss_pred cCHHHHHHHHHHHHHhhhc
Confidence 6789999999999999973
No 212
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.31 E-value=4.2e+02 Score=22.70 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecccc
Q 044053 103 DHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS 176 (327)
Q Consensus 103 ~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~ 176 (327)
..+.+.+++.++.+|.+ +.++ .+. ..+.....+.++.+.++| +..|=++..+
T Consensus 14 ~~~~~g~~~~a~~~g~~-~~~~---~~~-----------------~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~ 65 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYE-VEIV---FDA-----------------QNDPEEQIEQIEQAISQG-VDGIIVSPVD 65 (257)
T ss_dssp HHHHHHHHHHHHHHTCE-EEEE---EES-----------------TTTHHHHHHHHHHHHHTT-ESEEEEESSS
T ss_pred HHHHHHHHHHHHHcCCE-EEEe---CCC-----------------CCCHHHHHHHHHHHHHhc-CCEEEecCCC
Confidence 56778888888888853 2322 111 123566777788887776 6666665443
No 213
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=24.25 E-value=4.5e+02 Score=24.81 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=51.1
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHH
Q 044053 100 AHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKK 179 (327)
Q Consensus 100 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~ 179 (327)
.+++.+++-+++.|++.|++--| -..+.+.|-..= ..|+.+|....
T Consensus 6 ~~~e~L~~~~~~vl~~~G~~ee~----------------------------A~~vA~~lv~ad------~~G~~SHGv~r 51 (349)
T COG2055 6 VSAEELKALIEEVLRKAGVPEED----------------------------ARAVADVLVAAD------LRGVDSHGVGR 51 (349)
T ss_pred ecHHHHHHHHHHHHHHcCCCHHH----------------------------HHHHHHHHHHHH------hcCCcccchHH
Confidence 45789999999999999863222 222223332222 35778888777
Q ss_pred HHHHHHh---CCCC----Ceee-------ecccCccccc-------HHHHHHHHHcCCEEEEec
Q 044053 180 IETILTF---ATIP----PSIN-------QVEMHPVWQQ-------RKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 180 l~~~~~~---~~~~----~~~~-------q~~~~~~~~~-------~~ll~~~~~~gi~v~a~~ 222 (327)
+...++. .++. |.++ ++.-+--.-+ +..++.|+++||++++-.
T Consensus 52 ~p~yi~~l~~G~i~~~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav~ 115 (349)
T COG2055 52 LPGYVRRLKAGKINPDAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAVR 115 (349)
T ss_pred HHHHHHHHHcCCcCCCCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEEe
Confidence 6665543 3321 2222 2221111111 568999999999998754
No 214
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=24.14 E-value=2.6e+02 Score=21.38 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=31.0
Q ss_pred eccccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCC
Q 044053 172 LSNFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 172 vS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 224 (327)
++..+.++++.++... ..+.++=.--+.....+++.++++++||++..+..-
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 3445566666666542 223333333333333578889999999999887543
No 215
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=24.13 E-value=1.8e+02 Score=27.05 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCccEEEeccccHHH-----HHHHHHhC----CCCCe----e------eecccCcccccHHHHHHH
Q 044053 151 YRGVWEAMEESQMLGLTKSIGLSNFSCKK-----IETILTFA----TIPPS----I------NQVEMHPVWQQRKLIEFC 211 (327)
Q Consensus 151 ~~~~~~~l~~l~~~Gkir~iGvS~~~~~~-----l~~~~~~~----~~~~~----~------~q~~~~~~~~~~~ll~~~ 211 (327)
..+.++.|+.+.+.++|+.+-+-.|++.+ ++++..+. +.... . .|-.+. ...-..+++.|
T Consensus 94 ~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~A 172 (325)
T cd01306 94 DPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYA-PANRSELAALA 172 (325)
T ss_pred CccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHH
Confidence 45788999999999999999999998765 22222222 11100 0 010111 00115689999
Q ss_pred HHcCCEEEEec
Q 044053 212 KAKGIIVTAYS 222 (327)
Q Consensus 212 ~~~gi~v~a~~ 222 (327)
+++|+.+.++.
T Consensus 173 ~~~gl~vasH~ 183 (325)
T cd01306 173 RARGIPLASHD 183 (325)
T ss_pred HHCCCcEEEec
Confidence 99999998875
No 216
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=24.12 E-value=58 Score=26.11 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=11.6
Q ss_pred HHHHHHHHcCCCEEeC
Q 044053 45 LAVLEAIKLGYRHFDT 60 (327)
Q Consensus 45 ~~l~~A~~~Gi~~~DT 60 (327)
..+...++.|||+||-
T Consensus 30 ~~i~~QL~~GiR~lDl 45 (146)
T PF00388_consen 30 WSIREQLESGIRYLDL 45 (146)
T ss_dssp HHHHHHHHTT--EEEE
T ss_pred HhHHHHHhccCceEEE
Confidence 3588999999999983
No 217
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.10 E-value=6.1e+02 Score=23.90 Aligned_cols=92 Identities=13% Similarity=0.079 Sum_probs=52.5
Q ss_pred ccCcceeeccccC------------------CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCC
Q 044053 25 NMPVIGLGCAVDK------------------SDTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSR 86 (327)
Q Consensus 25 ~vs~lglG~~~~~------------------~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R 86 (327)
.|-.||||..+-+ .+.++ ...+..-+.||+|+-+|- +...+-+.|+.++..+ .-
T Consensus 15 pIimIGfGSigrgTLPLierhf~~d~~~~~viDp~e--k~~k~~~~~girfV~e~i---t~~Nyk~vL~pll~~~---~g 86 (481)
T COG5310 15 PIIMIGFGSIGRGTLPLIERHFKFDRSRMVVIDPRE--KDRKILDERGIRFVQEAI---TRDNYKDVLKPLLKGV---GG 86 (481)
T ss_pred cEEEEeecccccccchhHHHhcCCChhheEEechhH--HHHHHHHhhhhHHHHHhc---ChhhHHHHHHHHhhcC---CC
Confidence 4556888876533 23333 344555688999997664 2333445555554433 33
Q ss_pred CcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCC
Q 044053 87 EQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPIS 131 (327)
Q Consensus 87 ~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~ 131 (327)
+.+.|--.+ +.+.-. +-+-.+++++=|||-+.=-|+.+
T Consensus 87 qgf~vnLSv---d~~s~D----lmr~crk~~vLYidTvVEpW~gf 124 (481)
T COG5310 87 QGFCVNLSV---DTSSLD----LMRLCRKHGVLYIDTVVEPWLGF 124 (481)
T ss_pred ceEEEEeEe---ccchhH----HHHHHHHcCeEEEeeeecccccc
Confidence 444443332 222222 34456788998999888777754
No 218
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=23.92 E-value=1.4e+02 Score=27.84 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=18.5
Q ss_pred ccHHHHHHHHHcCCEEEEecCCCC
Q 044053 203 QQRKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 203 ~~~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
...++.++|++.||.++. |||..
T Consensus 91 ~~~~Lke~a~~~Gi~~~S-SPfd~ 113 (347)
T COG2089 91 WHAQLKEYARKRGIIFFS-SPFDL 113 (347)
T ss_pred HHHHHHHHHHHcCeEEEe-cCCCH
Confidence 347899999999999876 68854
No 219
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=23.89 E-value=6.7e+02 Score=24.26 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 044053 67 EKALGEAIAEALRLGLVSSREQLFITSKL 95 (327)
Q Consensus 67 E~~lG~~L~~~~~~g~~~~R~~v~I~tK~ 95 (327)
-+.|++++++. +|++...++||+++-.
T Consensus 119 R~~VA~~I~rR--DG~p~~p~dI~LT~GA 145 (475)
T KOG0258|consen 119 RKHVAEFIERR--DGIPADPEDIFLTTGA 145 (475)
T ss_pred HHHHHHHHHhc--cCCCCCHHHeeecCCC
Confidence 45677777754 5665577889998874
No 220
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.87 E-value=4.5e+02 Score=24.72 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHcC--C--ccEEEec--cccHHHHHHHHHhCC-CCCeeeecccCcccc------c----HHHHHHH
Q 044053 149 MDYRGVWEAMEESQMLG--L--TKSIGLS--NFSCKKIETILTFAT-IPPSINQVEMHPVWQ------Q----RKLIEFC 211 (327)
Q Consensus 149 ~~~~~~~~~l~~l~~~G--k--ir~iGvS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~ll~~~ 211 (327)
...+++++++.+....+ + ++++=+. |-+.++++++.+... ++..++=++||+... . ..+....
T Consensus 231 ~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L 310 (349)
T PRK14463 231 YPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYL 310 (349)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHH
Confidence 34788888888776654 2 3455555 344677777766553 445677788988642 1 3456778
Q ss_pred HHcCCEEEEecCCCC
Q 044053 212 KAKGIIVTAYSPLGA 226 (327)
Q Consensus 212 ~~~gi~v~a~~pl~~ 226 (327)
+++||.+....+.|.
T Consensus 311 ~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 311 LDKHVTVITRSSRGS 325 (349)
T ss_pred HHCCceEEEeCCCCc
Confidence 899999999888864
No 221
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=23.84 E-value=6e+02 Score=23.68 Aligned_cols=24 Identities=4% Similarity=0.061 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCC
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTA 61 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA 61 (327)
.+.++..++++..-++||..|+..
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 456788888888889999999983
No 222
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=23.83 E-value=5.7e+02 Score=24.68 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHc------CCccEEEeccccHHHHHHHHHhCCCCCeeeecccCcc---cccHHHHHHHHHcCCEEEEecC
Q 044053 153 GVWEAMEESQML------GLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 153 ~~~~~l~~l~~~------Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~~p 223 (327)
+-++.|.+|++. ..=-..+=|.++...+.++++.... +++|+..+-+ ..-.++..+|+.+||.++..+.
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~--d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~ 356 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAG--HMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGT 356 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCC--CEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 346667777655 2223456677788888888876543 4777776553 2337899999999999998765
Q ss_pred C
Q 044053 224 L 224 (327)
Q Consensus 224 l 224 (327)
.
T Consensus 357 ~ 357 (408)
T TIGR01502 357 C 357 (408)
T ss_pred C
Confidence 5
No 223
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=23.70 E-value=6.9e+02 Score=24.37 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=60.7
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC-CCceeEEEeecCCCCCCCCCCCC
Q 044053 62 AMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQ-MEYLDLYLVHLPISSKPGEVGFP 140 (327)
Q Consensus 62 ~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~-~d~iDl~~lH~p~~~~~~~~~~~ 140 (327)
-.||.|+.|-++|++..+.- +.+-++|.|-.-..-. -+.+..-+++.-++.. ...+.++.++.|+....
T Consensus 72 ~VfGg~~~L~~aI~~~~~~~---~P~~I~V~ttC~~eiI-GDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~------ 141 (455)
T PRK14476 72 TILGGDENVEEAILNICKKA---KPKIIGLCTTGLTETR-GDDVAGALKEIRARHPELADTPIVYVSTPDFKGA------ 141 (455)
T ss_pred eEeCCHHHHHHHHHHHHHhh---CCCEEEEeCcchHhhh-hccHHHHHHHHHhhccccCCCeEEEecCCCCCCc------
Confidence 56888888888888764432 3455667766532111 1233333333222221 11367888888865321
Q ss_pred CCCCCCCCCCHHHHHHHHHH-HH--------HcCCccEEEeccc---cHHHHHHHHHhCCCCC
Q 044053 141 VPKEDLLPMDYRGVWEAMEE-SQ--------MLGLTKSIGLSNF---SCKKIETILTFATIPP 191 (327)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~-l~--------~~Gkir~iGvS~~---~~~~l~~~~~~~~~~~ 191 (327)
.....+.+++++-+ +. +.++|.=||-+++ +.+++.++++..++.+
T Consensus 142 ------~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 142 ------LEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred ------HHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 01113334444322 22 3456888875544 4677888888777664
No 224
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=23.67 E-value=51 Score=29.12 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=29.8
Q ss_pred cccCcceeeccccC--------------CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHH
Q 044053 24 LNMPVIGLGCAVDK--------------SDTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEA 77 (327)
Q Consensus 24 ~~vs~lglG~~~~~--------------~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~ 77 (327)
-.|.++++.+...+ ..-+-.......|.+.|+++||.. ||.+|...=+.|.+.
T Consensus 168 ~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~~ 234 (241)
T PF01784_consen 168 KKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKYHDAQDAKENGINLIDAG-HYASERPGMEALAEW 234 (241)
T ss_dssp SEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHHH
T ss_pred CcccEEEEEcccCccHHHHHHhCCCeEEEEccCcHHHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHHH
Confidence 67778776654322 111223344567788888888854 777776655555443
No 225
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=23.65 E-value=5.9e+02 Score=23.52 Aligned_cols=77 Identities=17% Similarity=0.066 Sum_probs=51.5
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 044053 85 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQML 164 (327)
Q Consensus 85 ~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 164 (327)
.++.+.++.|.....+ ...+.+.+++..+++| +++.+ ..|.. .+.....+.++.+.++
T Consensus 22 ~~~~i~~v~k~~~~pf-~~~~~~Gi~~aa~~~G---~~v~~-~~~~~-----------------~d~~~q~~~i~~li~~ 79 (336)
T PRK15408 22 AAERIAFIPKLVGVGF-FTSGGNGAKEAGKELG---VDVTY-DGPTE-----------------PSVSGQVQLINNFVNQ 79 (336)
T ss_pred CCcEEEEEECCCCCHH-HHHHHHHHHHHHHHhC---CEEEE-ECCCC-----------------CCHHHHHHHHHHHHHc
Confidence 5778888888654332 4678889999999998 44443 33321 1245566888888887
Q ss_pred CCccEEEeccccHHHHHHHH
Q 044053 165 GLTKSIGLSNFSCKKIETIL 184 (327)
Q Consensus 165 Gkir~iGvS~~~~~~l~~~~ 184 (327)
| +..|-++..+...+...+
T Consensus 80 ~-vdgIiv~~~d~~al~~~l 98 (336)
T PRK15408 80 G-YNAIIVSAVSPDGLCPAL 98 (336)
T ss_pred C-CCEEEEecCCHHHHHHHH
Confidence 6 889999877755444333
No 226
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=23.47 E-value=6.3e+02 Score=23.83 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCCcEEEEeccCC---------------CCCChhhHHHHHHHHHHHhCCC-ceeEEEeecCCCCCCCCCCCCCCCCCCC
Q 044053 84 SSREQLFITSKLWC---------------QNAHRDHVIPALKKSLSALQME-YLDLYLVHLPISSKPGEVGFPVPKEDLL 147 (327)
Q Consensus 84 ~~R~~v~I~tK~~~---------------~~~~~~~i~~~le~SL~rL~~d-~iDl~~lH~p~~~~~~~~~~~~~~~~~~ 147 (327)
+.|.-+.|+|-++. .+.+...|..++....++++.. .=-+--++...-..|
T Consensus 98 ~~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEP------------- 164 (349)
T COG0820 98 KDRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEP------------- 164 (349)
T ss_pred cCCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCch-------------
Q ss_pred CCCHHHHHHHHHHHH-HcCC-c--cEEEecccc-HHHHHHHHHhCCCCCeeeecccCccccc--HHHHHHHHHcCC
Q 044053 148 PMDYRGVWEAMEESQ-MLGL-T--KSIGLSNFS-CKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGI 216 (327)
Q Consensus 148 ~~~~~~~~~~l~~l~-~~Gk-i--r~iGvS~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi 216 (327)
....+.+..+++-+. ..|. + |+|-+|+-. ...|.++.+ ..-.+..++.+|..+.+ ..+++..++..+
T Consensus 165 l~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~--~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~ 238 (349)
T COG0820 165 LLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLAD--EQLGVALAISLHAPNDELRDQLMPINKKYPI 238 (349)
T ss_pred hhhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHh--hcCCeEEEEecCCCCHHHHhhhhccccCCCH
No 227
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.37 E-value=5.7e+02 Score=23.91 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHcCC---ccEEEec--cccHHHHHHHHHhCC-CCCeeeecccCccccc---------HHHHHHH--H
Q 044053 150 DYRGVWEAMEESQMLGL---TKSIGLS--NFSCKKIETILTFAT-IPPSINQVEMHPVWQQ---------RKLIEFC--K 212 (327)
Q Consensus 150 ~~~~~~~~l~~l~~~Gk---ir~iGvS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~---------~~ll~~~--~ 212 (327)
+++++++++.++.+.|+ ++++=+. |.+.++++++.+... ++..++-++||+.... ..+.+.. +
T Consensus 229 ~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~~~~~~p~~~~i~~f~~~l~~~ 308 (336)
T PRK14470 229 PLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDATGRYRPPDEDEWNAFRDALARE 308 (336)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCCCCccCCCHHHHHHHHHHHHHc
Confidence 57889999998887754 2344333 345666766666543 4567888899985321 2345556 3
Q ss_pred HcCCEEEEecCCCC
Q 044053 213 AKGIIVTAYSPLGA 226 (327)
Q Consensus 213 ~~gi~v~a~~pl~~ 226 (327)
++||.+......|.
T Consensus 309 ~~g~~~~~R~~~G~ 322 (336)
T PRK14470 309 LPGTPVVRRYSGGQ 322 (336)
T ss_pred cCCeEEEEECCCCC
Confidence 67999988887764
No 228
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=23.36 E-value=6.3e+02 Score=23.78 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=0.0
Q ss_pred cCcceeeccccC----------CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 044053 26 MPVIGLGCAVDK----------SDTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKL 95 (327)
Q Consensus 26 vs~lglG~~~~~----------~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~ 95 (327)
+.+|.+|.-.+. .+.+++.+.++.+-+.|+..+-.==.| |+
T Consensus 114 ~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~----------------Gl------------- 164 (370)
T PRK06294 114 INRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIY----------------GL------------- 164 (370)
T ss_pred CCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeec----------------CC-------------
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCceeEEEeec-----------------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 044053 96 WCQNAHRDHVIPALKKSLSALQMEYLDLYLVHL-----------------PISSKPGEVGFPVPKEDLLPMDYRGVWEAM 158 (327)
Q Consensus 96 ~~~~~~~~~i~~~le~SL~rL~~d~iDl~~lH~-----------------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (327)
+..+.+.+++.++..++ |+.++|.+|.+.- |+.... .+-...+.
T Consensus 165 --Pgqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 225 (370)
T PRK06294 165 --PTQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEIL----------------AEMSLAAE 225 (370)
T ss_pred --CCCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHH----------------HHHHHHHH
Q ss_pred HHHHHcCCccEEEeccc
Q 044053 159 EESQMLGLTKSIGLSNF 175 (327)
Q Consensus 159 ~~l~~~Gkir~iGvS~~ 175 (327)
+.|.+.|- .++++|||
T Consensus 226 ~~L~~~Gy-~~yeis~f 241 (370)
T PRK06294 226 ELLTSQGF-TRYELASY 241 (370)
T ss_pred HHHHHcCC-Ceeeeeee
No 229
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.34 E-value=5.3e+02 Score=24.06 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHc-CC---ccEEEec--cccHHHHHHHHHhCC-CCCeeeecccCccccc---------HHHHHHHHH
Q 044053 150 DYRGVWEAMEESQML-GL---TKSIGLS--NFSCKKIETILTFAT-IPPSINQVEMHPVWQQ---------RKLIEFCKA 213 (327)
Q Consensus 150 ~~~~~~~~l~~l~~~-Gk---ir~iGvS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~---------~~ll~~~~~ 213 (327)
+.++++++++++.+. |. ++++-+. |.+.++++++.+... .+..++-++||+.... ..+.+..++
T Consensus 233 ~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~ 312 (343)
T PRK14469 233 SIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTVPGLEKPSRERIERFKEILLK 312 (343)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCCccCCCCCHHHHHHHHHHHHH
Confidence 588899998877665 43 4455554 455667777766543 4445777788886421 345667788
Q ss_pred cCCEEEEecCCCC
Q 044053 214 KGIIVTAYSPLGA 226 (327)
Q Consensus 214 ~gi~v~a~~pl~~ 226 (327)
+|+.+......|.
T Consensus 313 ~gi~vtvr~~~g~ 325 (343)
T PRK14469 313 NGIEAEIRREKGS 325 (343)
T ss_pred CCCeEEEeCCCCc
Confidence 8999988776653
No 230
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=23.24 E-value=4e+02 Score=21.52 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc--HHHHHHHHHcCCEEEEec
Q 044053 161 SQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 161 l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~ 222 (327)
|.+.| +.-+=+..-..+.+.++++..++.-++..-+|.+..++ ..+.+.|.++||.+..+.
T Consensus 62 L~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~ 124 (165)
T PF00875_consen 62 LRKLG-IPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFD 124 (165)
T ss_dssp HHHTT-S-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHhcC-cceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEEC
Confidence 34445 44444444567788888887766555555667666544 668899999999998764
No 231
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=23.15 E-value=5.8e+02 Score=23.25 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=57.8
Q ss_pred HHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHcCCccEEEeccccHH-------HHH
Q 044053 113 LSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGV----WEAMEESQMLGLTKSIGLSNFSCK-------KIE 181 (327)
Q Consensus 113 L~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~l~~~Gkir~iGvS~~~~~-------~l~ 181 (327)
++-++-.++|+..+..+.... ...+.. -+.+-+..++--=|++|+.+.++. +++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~---------------~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~e 119 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVA---------------IIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELE 119 (293)
T ss_pred HhhhcccccceEEeecccccc---------------chHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHH
Confidence 677788889998888411100 001111 246777777777899999988754 344
Q ss_pred HHHHhCCCCCeeeecccCccccc--------HHHHHHHHHcCCEEEEecCCC
Q 044053 182 TILTFATIPPSINQVEMHPVWQQ--------RKLIEFCKAKGIIVTAYSPLG 225 (327)
Q Consensus 182 ~~~~~~~~~~~~~q~~~~~~~~~--------~~ll~~~~~~gi~v~a~~pl~ 225 (327)
+.....+ ++++..++..+. ..++++|+++|+.|+-+.-..
T Consensus 120 r~v~~~g----f~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 120 RRVRELG----FVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred HHHHhcC----ceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4444332 334444444332 568999999999998865443
No 232
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.05 E-value=5.1e+02 Score=22.78 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCccEEEec------------cccHHHHHHHHHhCCCCCeeee-----cccCccccc-----------H
Q 044053 154 VWEAMEESQMLGLTKSIGLS------------NFSCKKIETILTFATIPPSINQ-----VEMHPVWQQ-----------R 205 (327)
Q Consensus 154 ~~~~l~~l~~~Gkir~iGvS------------~~~~~~l~~~~~~~~~~~~~~q-----~~~~~~~~~-----------~ 205 (327)
+-+.++.+++.| +.+|-+. ......+.++++..++.+.... .++|+.... .
T Consensus 15 l~~~l~~~~~~G-~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 93 (275)
T PRK09856 15 IEHAFRDASELG-YDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIK 93 (275)
T ss_pred HHHHHHHHHHcC-CCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHH
Confidence 345666677777 2333331 1124567777777776654433 223433221 3
Q ss_pred HHHHHHHHcCCEEEEecCCC
Q 044053 206 KLIEFCKAKGIIVTAYSPLG 225 (327)
Q Consensus 206 ~ll~~~~~~gi~v~a~~pl~ 225 (327)
..+++|+..|...+...|..
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~ 113 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAH 113 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCC
Confidence 56789999999998877754
No 233
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.02 E-value=5.4e+02 Score=23.13 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHH
Q 044053 104 HVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETI 183 (327)
Q Consensus 104 ~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~ 183 (327)
.-+..+-+.|.++|+++|++=.+-.|... | . ..+.+++.+.+.. -..++..+++ -+...++.+
T Consensus 20 e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~-p------~------~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A 82 (274)
T cd07938 20 EDKIELIDALSAAGLRRIEVTSFVSPKWV-P------Q------MADAEEVLAGLPR---RPGVRYSALV-PNLRGAERA 82 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccc-c------c------cCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHH
Confidence 44556667799999999998743222111 1 0 1124445555443 2246667765 456778888
Q ss_pred HHhCCCCCeeeecccCcccc--------------cHHHHHHHHHcCCEEEE
Q 044053 184 LTFATIPPSINQVEMHPVWQ--------------QRKLIEFCKAKGIIVTA 220 (327)
Q Consensus 184 ~~~~~~~~~~~q~~~~~~~~--------------~~~ll~~~~~~gi~v~a 220 (327)
++.. ++....-+..|..+. -.+.+++++++|+.+..
T Consensus 83 ~~~g-~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 83 LAAG-VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred HHcC-cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 8753 332223333332211 14568899999998863
No 234
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=22.98 E-value=6.2e+02 Score=23.59 Aligned_cols=111 Identities=11% Similarity=0.029 Sum_probs=54.4
Q ss_pred CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCccEEEecc---
Q 044053 99 NAHRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQML-GLTKSIGLSN--- 174 (327)
Q Consensus 99 ~~~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-Gkir~iGvS~--- 174 (327)
.++.+.+. .+-+.|.+.|+++|.+-+.-..... ++.+. ....+.. +.++.+++. ...+...+..
T Consensus 21 ~f~~~~~~-~i~~~L~~aGv~~IEvg~~~g~g~~-----s~~~g---~~~~~~~---e~i~~~~~~~~~~~~~~ll~pg~ 88 (337)
T PRK08195 21 QYTLEQVR-AIARALDAAGVPVIEVTHGDGLGGS-----SFNYG---FGAHTDE---EYIEAAAEVVKQAKIAALLLPGI 88 (337)
T ss_pred ccCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCc-----cccCC---CCCCCHH---HHHHHHHHhCCCCEEEEEeccCc
Confidence 44445444 4455599999999998742211100 00000 0011233 344444222 3355544332
Q ss_pred ccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEec
Q 044053 175 FSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 222 (327)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~ 222 (327)
.+...++.+.+. +++..-+-...+-.+.-.+.+++++++|..+...-
T Consensus 89 ~~~~dl~~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 89 GTVDDLKMAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred ccHHHHHHHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEE
Confidence 245667666654 33322222222222222678999999998877653
No 235
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=22.68 E-value=6.9e+02 Score=23.97 Aligned_cols=136 Identities=16% Similarity=0.228 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHHHcCCCE-EeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEec--------cC--CCCCChhhHH
Q 044053 38 SDTDALKLAVLEAIKLGYRH-FDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSK--------LW--CQNAHRDHVI 106 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~-~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK--------~~--~~~~~~~~i~ 106 (327)
.+-++-.+-+..|.+.|... .|-+. .|.-..+-+++-+ -.++=|.|= +. ..+.+.+.+.
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLSt-Ggdl~eiR~~ii~---------~s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~ 144 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLST-GGDLHEIREWIIR---------NSPVPVGTVPIYQALEEVNGKVEDLTEDDFF 144 (432)
T ss_pred CCHHHHHHHHHHHHHhCcceeEeccc-CCCHHHHHHHHHh---------cCCCCcCCchHHHHHHHHhcchhhCCHHHHH
Confidence 44455556678899999654 45543 3544444444432 111212111 01 2356777788
Q ss_pred HHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHh
Q 044053 107 PALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTF 186 (327)
Q Consensus 107 ~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~ 186 (327)
..+++..+ +-+|.+-+|.- -.++.++.+++.|++ .|+-+-...-+...+-.
T Consensus 145 ~~v~~qa~----~GVdfmTIHaG-----------------------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~ 195 (432)
T COG0422 145 DTVEKQAE----QGVDFMTIHAG-----------------------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLH 195 (432)
T ss_pred HHHHHHHH----hCCcEEEeehh-----------------------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHH
Confidence 88877776 56888999953 245788999999875 46555555554444332
Q ss_pred CCCCCeeeecccCccccc-HHHHHHHHHcCCEEEE
Q 044053 187 ATIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTA 220 (327)
Q Consensus 187 ~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~a 220 (327)
.. .=||++.. .++++.|+++++.+--
T Consensus 196 ~~--------~ENply~~fd~lleI~k~yDvtlSL 222 (432)
T COG0422 196 NH--------KENPLYEHFDELLEIFKEYDVTLSL 222 (432)
T ss_pred cC--------CcCchhhhHHHHHHHHHHhCeeeec
Confidence 11 33566555 7899999999998843
No 236
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=22.61 E-value=5.7e+02 Score=22.96 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHH----
Q 044053 103 DHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCK---- 178 (327)
Q Consensus 103 ~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~---- 178 (327)
+.+++-+.+.++.++ +++..|=++..-....+ .....++.+.++.+++.|..-..=+=-++..
T Consensus 37 ~~~~~f~~~ii~~l~-~~v~~vK~g~~lf~~~G------------~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnTv~ 103 (261)
T TIGR02127 37 AGLQAFCLRIIDATA-EYAAVVKPQVAFFERFG------------SEGFKALEEVIAHARSLGLPVLADVKRGDIGSTAS 103 (261)
T ss_pred HHHHHHHHHHHHhcC-CcceEEecCHHHHHhcC------------HHHHHHHHHHHHHHHHCCCeEEEEeeccChHHHHH
Confidence 455566777888887 78888866665322110 0012334445566777775433333333322
Q ss_pred -HHHHHHHhCCCCCeeeecccCccccc---HHHHHHHHHcC--CEEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCC
Q 044053 179 -KIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKG--IIVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKT 252 (327)
Q Consensus 179 -~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~g--i~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s 252 (327)
-.+.+.+..+. ..+-.|++... ...++.++++| +.|++-...-+ ...++.+.-..+.+
T Consensus 104 ~~a~a~~~~~g~----D~vTvh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~------------~~~lq~~~~~~~~~ 167 (261)
T TIGR02127 104 AYAKAWLGHLHA----DALTVSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPG------------GADLQDLRVSDGRT 167 (261)
T ss_pred HHHHHHHhhcCC----CEEEECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCC------------HHHHhhhhccCCCC
Confidence 12222222222 23344554433 44556666554 44444333311 12233322222335
Q ss_pred HHHHHHHHHHhc-------C-CEEeecCCCHHHHHHh
Q 044053 253 VAQVSLRWIVEQ-------G-ATVVVKSLNLERMKQN 281 (327)
Q Consensus 253 ~aq~al~w~l~~-------~-~~vi~g~~~~~~l~en 281 (327)
..+..++++..- + .-+|+|++++++++.-
T Consensus 168 ~~~~V~~~a~~~~~~~~~~g~~GvV~gAT~p~e~~~i 204 (261)
T TIGR02127 168 VYEEVAELAGELNESPGDCSSVGAVVGATSPGDLLRL 204 (261)
T ss_pred HHHHHHHHHHHhccccCcCCceEEEECCCCHHHHHHH
Confidence 555555544322 3 5788998887665543
No 237
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=22.52 E-value=5e+02 Score=22.28 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=23.1
Q ss_pred HHHHHHHcCCccEEEeccccHHHHHHHHHhC
Q 044053 157 AMEESQMLGLTKSIGLSNFSCKKIETILTFA 187 (327)
Q Consensus 157 ~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~ 187 (327)
.++.+++.|....+=+++|+.+.+..+.+..
T Consensus 108 ~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~ 138 (226)
T cd08568 108 VLEIVEKFNALDRVIFSSFNHDALRELRKLD 138 (226)
T ss_pred HHHHHHHcCCCCcEEEEECCHHHHHHHHHhC
Confidence 3444556677778899999999988877654
No 238
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=22.50 E-value=7.3e+02 Score=24.17 Aligned_cols=150 Identities=22% Similarity=0.238 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHHHH-cCCC-EEeCCCCcCCHHHHHHHHHHHHh--cCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 044053 39 DTDALKLAVLEAIK-LGYR-HFDTAAMYGTEKALGEAIAEALR--LGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLS 114 (327)
Q Consensus 39 ~~~~~~~~l~~A~~-~Gi~-~~DTA~~YgsE~~lG~~L~~~~~--~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~ 114 (327)
+.+...+.+..+++ .+.. ++-..+..|. ..+-+++.+++. .|+....++|+|++= ...+++-.++
T Consensus 105 p~~~~~~~~~~~~~~~~~~~~~~y~~~~G~-~~LR~~ia~~l~~~~g~~~~~~~IiiT~G----------~q~al~l~~~ 173 (459)
T COG1167 105 PLEALRRALARVLRNYGASLALQYGPTAGL-PELREAIAAYLLARRGISCEPEQIVITSG----------AQQALDLLLR 173 (459)
T ss_pred CHHHHHHHHHHHHhhcchhhhhcCCCCCCc-HHHHHHHHHHHHHhcCCccCcCeEEEeCC----------HHHHHHHHHH
Confidence 45556666666653 2333 2211112232 223333333332 365434567887764 3455554444
Q ss_pred HhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecc----ccHHHHHHHHHhCCCC
Q 044053 115 ALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSN----FSCKKIETILTFATIP 190 (327)
Q Consensus 115 rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~----~~~~~l~~~~~~~~~~ 190 (327)
-| ++-=|.+.+-.|.+. .++.-++..| ++.++|.. .+++.++++++..+++
T Consensus 174 ~l-~~pGd~v~vE~PtY~-----------------------~~~~~~~~~g-~~~~~vp~d~~G~~~e~le~~~~~~~~k 228 (459)
T COG1167 174 LL-LDPGDTVLVEDPTYP-----------------------GALQALEALG-ARVIPVPVDEDGIDPEALEEALAQWKPK 228 (459)
T ss_pred Hh-CCCCCEEEEcCCCcH-----------------------HHHHHHHHcC-CcEEecCCCCCCCCHHHHHHHHhhcCCc
Confidence 44 355688888887531 3344444444 56777754 4578888888765444
Q ss_pred Ceee----ecccCccc---ccHHHHHHHHHcCCEEEEecCC
Q 044053 191 PSIN----QVEMHPVW---QQRKLIEFCKAKGIIVTAYSPL 224 (327)
Q Consensus 191 ~~~~----q~~~~~~~---~~~~ll~~~~~~gi~v~a~~pl 224 (327)
..++ |++..... +...++++|+++|+-||-=-++
T Consensus 229 ~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y 269 (459)
T COG1167 229 AVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYY 269 (459)
T ss_pred EEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcc
Confidence 4333 33333222 2377999999999999875555
No 239
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=22.38 E-value=7.6e+02 Score=24.36 Aligned_cols=113 Identities=10% Similarity=0.087 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQM 118 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~ 118 (327)
+++-....++.|.+.||..|=..+.-..-+.+-.+++.....| ..-.+.|+-.. ...++.+.+.+.+++ +..+|.
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G---~~~~~~i~yt~-sp~~t~~y~~~~a~~-l~~~Ga 177 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTG---KEAQLCIAYTT-SPVHTLNYYLSLVKE-LVEMGA 177 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcC---CEEEEEEEEEe-CCcCcHHHHHHHHHH-HHHcCC
Confidence 4566777899999999998877776653333333333221124 22123333332 223344556665555 456775
Q ss_pred CceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecccc
Q 044053 119 EYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS 176 (327)
Q Consensus 119 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~ 176 (327)
| .+.|-.... ...+.++.+.+..+++...+ -||+-.|+
T Consensus 178 d---~I~IkDtaG----------------~l~P~~v~~Lv~alk~~~~~-pi~~H~Hn 215 (468)
T PRK12581 178 D---SICIKDMAG----------------ILTPKAAKELVSGIKAMTNL-PLIVHTHA 215 (468)
T ss_pred C---EEEECCCCC----------------CcCHHHHHHHHHHHHhccCC-eEEEEeCC
Confidence 4 344433211 23466777777777775543 47877776
No 240
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=1.7e+02 Score=26.08 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHH
Q 044053 43 LKLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEA 77 (327)
Q Consensus 43 ~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~ 77 (327)
.......|.+.|+++|| |.+|.+|+..=+.+.+.
T Consensus 199 ~~~~~~~a~e~gi~~i~-~gH~~tE~~g~~~l~~~ 232 (250)
T COG0327 199 SHHTAHDARELGLSVID-AGHYATERPGLKALAEL 232 (250)
T ss_pred cHHHHHHHHHCCCeEEe-cCchHHHHHHHHHHHHH
Confidence 34567778888888888 44676666544455444
No 241
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=22.34 E-value=6e+02 Score=23.17 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcCCCEEeCC--C----CcC-C-HHHHH---HHHHHHHh-cCCCCCCCcEEEEeccCCCCCChhhHHHHHH
Q 044053 43 LKLAVLEAIKLGYRHFDTA--A----MYG-T-EKALG---EAIAEALR-LGLVSSREQLFITSKLWCQNAHRDHVIPALK 110 (327)
Q Consensus 43 ~~~~l~~A~~~Gi~~~DTA--~----~Yg-s-E~~lG---~~L~~~~~-~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le 110 (327)
+...+..+++.|++|+|.- + .+| + +..+. +++++... .| -|-.+.++ +.. ..+++.+++.++
T Consensus 74 ~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~g---i~~~li~~--~~r-~~~~~~~~~~~~ 147 (324)
T TIGR01430 74 AYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFG---IKSRLILC--GMR-HKQPEAAEETLE 147 (324)
T ss_pred HHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcC---CeEEEEEE--EeC-CCCHHHHHHHHH
Confidence 5666778889999999942 1 223 2 33332 23332111 12 22223332 222 235677777777
Q ss_pred HHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccc-cHHHHHHHHHhCCC
Q 044053 111 KSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF-SCKKIETILTFATI 189 (327)
Q Consensus 111 ~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~ 189 (327)
..++ .+-+.+--+-++.... ....+...+.++.+++.|+--.+=++.. +...+..++...+.
T Consensus 148 ~~~~-~~~~~vvg~~l~~~e~----------------~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~ 210 (324)
T TIGR01430 148 LAKP-YKEQTIVGFGLAGDER----------------GGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGA 210 (324)
T ss_pred HHHh-hccCcEEEecCCCCCC----------------CCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCc
Confidence 7665 3322232222332211 1125566788888888887665555543 23445555443332
Q ss_pred CCeeeecccCcccccHHHHHHHHHcCCEEEEecCCC
Q 044053 190 PPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLG 225 (327)
Q Consensus 190 ~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~ 225 (327)
.-.. ....+..+.+.++..+++||.+.. .|..
T Consensus 211 ~ri~---Hg~~l~~~~~~i~~l~~~gi~v~~-cP~S 242 (324)
T TIGR01430 211 TRIG---HGVRALEDPELLKRLAQENITLEV-CPTS 242 (324)
T ss_pred hhcc---hhhhhccCHHHHHHHHHcCceEEE-CCcc
Confidence 1111 111112236789999999998854 4543
No 242
>PRK10799 metal-binding protein; Provisional
Probab=22.30 E-value=1.5e+02 Score=26.23 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHcCCCEEeCCCCcCCHHHHHHHHHHH
Q 044053 47 VLEAIKLGYRHFDTAAMYGTEKALGEAIAEA 77 (327)
Q Consensus 47 l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~ 77 (327)
...|.+.|+++||. .||.+|...-+.|.+.
T Consensus 200 ~~~A~~~gl~li~~-GH~~sE~~~~~~la~~ 229 (247)
T PRK10799 200 IHSAREQGLHFYAA-GHHATERGGIRALSEW 229 (247)
T ss_pred HHHHHHCCCeEEEc-CchHHHHHHHHHHHHH
Confidence 45677778888874 4666776633444443
No 243
>PRK06256 biotin synthase; Validated
Probab=22.17 E-value=5.7e+02 Score=23.48 Aligned_cols=124 Identities=13% Similarity=0.036 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEe-ccc--cHH---HHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEe
Q 044053 148 PMDYRGVWEAMEESQMLGLTKSIGL-SNF--SCK---KIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 221 (327)
Q Consensus 148 ~~~~~~~~~~l~~l~~~Gkir~iGv-S~~--~~~---~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~ 221 (327)
..+.+++.+..+++++.|..+.+=+ +.+ ... .+.++++...-.+.+ .+..+.-....+.+...++.|+.-+..
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i-~~~~~~g~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDL-EICACLGLLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCC-cEEecCCcCCHHHHHHHHHhCCCEEec
Confidence 3578999999999999996543312 233 222 344444332211111 112222224578889999999876643
Q ss_pred cCCCCCCccCCCCcccChHHHHHHHHHcCCCHHHHHHHHHHhcC----CEEeecC-CCHHHHHHhhcc
Q 044053 222 SPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQVSLRWIVEQG----ATVVVKS-LNLERMKQNLGI 284 (327)
Q Consensus 222 ~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~al~w~l~~~----~~vi~g~-~~~~~l~enl~a 284 (327)
+ + +. ..+.+..++..+...-.--+++.+...| +.+|+|. .+.+++.+.+..
T Consensus 169 ~-l----------Et-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~ 224 (336)
T PRK06256 169 N-L----------ET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFF 224 (336)
T ss_pred C-C----------cc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHH
Confidence 2 1 11 2233444443322111123555665555 3457775 466666665543
No 244
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=22.10 E-value=6.3e+02 Score=23.31 Aligned_cols=134 Identities=10% Similarity=0.115 Sum_probs=74.0
Q ss_pred CChHHHHHHHHHHHHcCCCEEeC----------CCCcC-----CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC-CCC
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDT----------AAMYG-----TEKALGEAIAEALRLGLVSSREQLFITSKLWCQ-NAH 101 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DT----------A~~Yg-----sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~-~~~ 101 (327)
.+.++..+..+.+.+.|+..||. ...+| +-+.+.+.++.... . . ++-|+.|+... +.+
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~-a---~--d~pv~vKiR~G~~~~ 147 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVN-A---V--DVPVTLKIRTGWAPE 147 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHH-h---c--CCceEEEEEccccCC
Confidence 56677777777788899999993 23344 24445555543210 1 1 34466666321 111
Q ss_pred hhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccc-cHHHH
Q 044053 102 RDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF-SCKKI 180 (327)
Q Consensus 102 ~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~-~~~~l 180 (327)
..... .+-+-++..| +|.+.+|.-..... ..-..-|+.+.++++.=+|-=||.... +++++
T Consensus 148 ~~~~~-~~a~~le~~G---~d~i~vh~rt~~~~--------------~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da 209 (321)
T PRK10415 148 HRNCV-EIAQLAEDCG---IQALTIHGRTRACL--------------FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKA 209 (321)
T ss_pred cchHH-HHHHHHHHhC---CCEEEEecCccccc--------------cCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHH
Confidence 11121 2223356667 46667886432110 000112567777777767888887776 58888
Q ss_pred HHHHHhCCCCCeeeecc
Q 044053 181 ETILTFATIPPSINQVE 197 (327)
Q Consensus 181 ~~~~~~~~~~~~~~q~~ 197 (327)
+++++..+.+ .+|+-
T Consensus 210 ~~~l~~~gad--gVmiG 224 (321)
T PRK10415 210 RAVLDYTGAD--ALMIG 224 (321)
T ss_pred HHHHhccCCC--EEEEC
Confidence 8888765544 45444
No 245
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.83 E-value=4.5e+02 Score=21.49 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHcCCCEEeCCCCcC---C--HHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC-CChhhHHHHHHHHH
Q 044053 40 TDALKLAVLEAIKLGYRHFDTAAMYG---T--EKALGEAIAEALRLGLVSSREQLFITSKLWCQN-AHRDHVIPALKKSL 113 (327)
Q Consensus 40 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg---s--E~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~-~~~~~i~~~le~SL 113 (327)
.++..+..+.|.+.|...+...+.|+ + ++.+-+.+++..+. -+.++-+.-+..+.. .+++.+.+.++..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~pv~iy~~p~~~~~~~~~~~~~~~~- 138 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA----ADGGLPLKVILETRGLKTADEIAKAARIA- 138 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH----hcCCceEEEEEECCCCCCHHHHHHHHHHH-
Confidence 57788899999999999999765543 3 45555555543221 111333333332222 2455555543333
Q ss_pred HHhCCCcee
Q 044053 114 SALQMEYLD 122 (327)
Q Consensus 114 ~rL~~d~iD 122 (327)
+..|.+.|.
T Consensus 139 ~~~g~~~iK 147 (201)
T cd00945 139 AEAGADFIK 147 (201)
T ss_pred HHhCCCEEE
Confidence 567776665
No 246
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=21.77 E-value=6.3e+02 Score=23.19 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHH----HHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHH
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTAAMYGTEKA----LGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSL 113 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~----lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL 113 (327)
.+.++..++++.+.+.|++.|.-.. | |.. +-+.++...+.. .-.++.|+|-... +. ..-+.|
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltG--G-EPll~~~l~~li~~i~~~~---gi~~v~itTNG~l-------l~-~~~~~L 108 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTG--G-EPLLRKDLVELVARLAALP---GIEDIALTTNGLL-------LA-RHAKDL 108 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--c-cccccCCHHHHHHHHHhcC---CCCeEEEEeCchh-------HH-HHHHHH
Confidence 4578888999999999998776432 2 222 223333210000 1226778885311 11 123456
Q ss_pred HHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHcCC
Q 044053 114 SALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLL--PMDYRGVWEAMEESQMLGL 166 (327)
Q Consensus 114 ~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~Gk 166 (327)
.+.|+++|- +-++..++... +... ....+.++++++.+++.|.
T Consensus 109 ~~~gl~~v~-ISld~~~~~~~---------~~i~~~~~~~~~vl~~i~~l~~~G~ 153 (334)
T TIGR02666 109 KEAGLKRVN-VSLDSLDPERF---------AKITRRGGRLEQVLAGIDAALAAGL 153 (334)
T ss_pred HHcCCCeEE-EecccCCHHHh---------heeCCCCCCHHHHHHHHHHHHHcCC
Confidence 666765544 33444332110 0110 1257889999999999885
No 247
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=21.72 E-value=1.6e+02 Score=23.06 Aligned_cols=50 Identities=22% Similarity=0.146 Sum_probs=32.6
Q ss_pred cHHHHHHHHHhCC-CCCeeeecccCcccccHHHHHHHHHcCCEEEEecCCC
Q 044053 176 SCKKIETILTFAT-IPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLG 225 (327)
Q Consensus 176 ~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~ 225 (327)
++.+++.+++.+. +.+.++-.--..-.....+.+.|++.||++-.|+.=+
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~A 106 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTGA 106 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccchh
Confidence 4667777777664 3333333333333444789999999999998876554
No 248
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=21.65 E-value=3.7e+02 Score=20.53 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=43.7
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC---CceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 044053 85 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQM---EYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEES 161 (327)
Q Consensus 85 ~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 161 (327)
.|=.+.|+-|++. ...+..+++.+.+.++.+.. ...|++++-.+... ..+..++.+.|..|
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~---------------~~~~~~l~~~l~~l 101 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAA---------------ELDYKEIKKSLIHV 101 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcc---------------cCCHHHHHHHHHHH
Confidence 4556777777765 55678888888888876642 35799999887543 23466777777665
Q ss_pred HHc
Q 044053 162 QML 164 (327)
Q Consensus 162 ~~~ 164 (327)
.+.
T Consensus 102 l~k 104 (114)
T PRK00499 102 LKL 104 (114)
T ss_pred HHH
Confidence 544
No 249
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.45 E-value=4.2e+02 Score=27.54 Aligned_cols=69 Identities=17% Similarity=0.066 Sum_probs=42.6
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCccEEEeccccHH
Q 044053 101 HRDHVIPALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQML--GLTKSIGLSNFSCK 178 (327)
Q Consensus 101 ~~~~i~~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Gkir~iGvS~~~~~ 178 (327)
+-+.+++-++.....-....--+|+|+..+.. ....+.+|.+..++ +.+.+|.++|....
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah~L------------------s~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML------------------TNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChHhc------------------CHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 34666666665544333345567888866432 23455666666666 88999999997666
Q ss_pred HHHHHHHhC
Q 044053 179 KIETILTFA 187 (327)
Q Consensus 179 ~l~~~~~~~ 187 (327)
.+..+...|
T Consensus 167 LlpTIrSRC 175 (700)
T PRK12323 167 IPVTVLSRC 175 (700)
T ss_pred hhhHHHHHH
Confidence 555555544
No 250
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=21.44 E-value=4.9e+02 Score=21.84 Aligned_cols=116 Identities=15% Similarity=0.166 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCCEEeCCCC--cC-----CHHHHHHHHHHHHhcCCCCCCCcEEEEecc-----CCCCCChhhHHHH
Q 044053 41 DALKLAVLEAIKLGYRHFDTAAM--YG-----TEKALGEAIAEALRLGLVSSREQLFITSKL-----WCQNAHRDHVIPA 108 (327)
Q Consensus 41 ~~~~~~l~~A~~~Gi~~~DTA~~--Yg-----sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~-----~~~~~~~~~i~~~ 108 (327)
+++..++-.++..|-..+=+... |. +++++|++-+++ . .-..+-++|-. ...|++++.+.
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR---~---~lpaIaLt~dsS~lTai~NDy~yd~vF-- 99 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKER---P---SLPAIALSTDSSVLTAIANDYGYDEVF-- 99 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcC---C---CCCeeEeecccHHHhhhhccccHHHHH--
Confidence 34666777888888777754422 21 467778777642 1 23345666554 23466666654
Q ss_pred HHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHH
Q 044053 109 LKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILT 185 (327)
Q Consensus 109 le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~ 185 (327)
.+..+.+|. -=|+++==.+.. ....++++++.+|+.|. .-||++.-+...+..+++
T Consensus 100 -sRqveA~g~-~GDvLigISTSG------------------NS~nVl~Ai~~Ak~~gm-~vI~ltG~~GG~~~~~~D 155 (176)
T COG0279 100 -SRQVEALGQ-PGDVLIGISTSG------------------NSKNVLKAIEAAKEKGM-TVIALTGKDGGKLAGLLD 155 (176)
T ss_pred -HHHHHhcCC-CCCEEEEEeCCC------------------CCHHHHHHHHHHHHcCC-EEEEEecCCCcccccccc
Confidence 444555663 346665555432 24678999999999985 568999888888776664
No 251
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=21.38 E-value=7.6e+02 Score=23.98 Aligned_cols=107 Identities=11% Similarity=0.211 Sum_probs=58.0
Q ss_pred CccEEEecc-----ccHHHHHHHHHhCC----CCC-eeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCc
Q 044053 166 LTKSIGLSN-----FSCKKIETILTFAT----IPP-SINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQ 235 (327)
Q Consensus 166 kir~iGvS~-----~~~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~ 235 (327)
.|..|-+.. .++.++.++++... +.. .-+-++.||-.-..+.++.+++.|+.-+..+.-..
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~--------- 173 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDF--------- 173 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC---------
Confidence 455554432 34777877776432 111 12334566655568999999999988777655432
Q ss_pred ccChHHHHHHHHHcCCCHHHHHHHHHHhcCC-----EEeec--CCCHHHHHHhhc
Q 044053 236 VLENEALKEIAKAHGKTVAQVSLRWIVEQGA-----TVVVK--SLNLERMKQNLG 283 (327)
Q Consensus 236 ~~~~~~l~~ia~~~~~s~aq~al~w~l~~~~-----~vi~g--~~~~~~l~enl~ 283 (327)
.++.++.+.+.+......-+++++...|. -.|.| ..|.+++.+.++
T Consensus 174 --~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~ 226 (453)
T PRK13347 174 --DPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLD 226 (453)
T ss_pred --CHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHH
Confidence 23344444333333334445566555541 13444 245666655553
No 252
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=21.35 E-value=2.1e+02 Score=24.93 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHhcC-CEEeecCCCHHHHHHhhcccccccCHHHHHHHhcC---------CCCCccCCccccCCC
Q 044053 257 SLRWIVEQG-ATVVVKSLNLERMKQNLGIFDWKLTDDDYDKINQI---------PQHRLIPSDFWVSPQ 315 (327)
Q Consensus 257 al~w~l~~~-~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~---------~~~~~~~~~~~~~~~ 315 (327)
.++..+..| .++|++..+ ..|.+. .+...++.+.++.|.++ .++..+....+.+|.
T Consensus 126 ll~e~i~~Gf~aiIv~V~~-~~L~~~--~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GEfhT~V~dgPl 191 (218)
T PF01902_consen 126 LLREFIESGFEAIIVKVDA-DGLDES--FLGRELDRELIEELPELNKKYGVDPCGEGGEFHTFVVDGPL 191 (218)
T ss_dssp HHHHHHHTT-EEEEEEEES-TT--GG--GTT-B--HHHHHHHHHHHHHH---TT-TTTTEEEEEEE-TT
T ss_pred HHHHHHHCCCeEEEEEEec-cCCChH--HCCCCccHHHHHHHHHHHhhcCccccCCCeeEEEEEEEccc
Confidence 445556678 455555443 344332 24557887777666553 334455555666664
No 253
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=21.34 E-value=7.2e+02 Score=23.70 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=67.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCccEEEecc-----cc-----HHHHHHHHHhC-CCC-C-eeeecccCcccccHHHHHHH
Q 044053 145 DLLPMDYRGVWEAMEESQMLGLTKSIGLSN-----FS-----CKKIETILTFA-TIP-P-SINQVEMHPVWQQRKLIEFC 211 (327)
Q Consensus 145 ~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~-----~~-----~~~l~~~~~~~-~~~-~-~~~q~~~~~~~~~~~ll~~~ 211 (327)
.....+.+.+.+.++.+++.| ++.|-+.. |. ...+.++++.. ..+ . .+.....++..-..++++..
T Consensus 163 ~~r~r~~e~I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m 241 (414)
T TIGR01579 163 RSRSVPMEAILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAI 241 (414)
T ss_pred CCccCCHHHHHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHH
Confidence 344567999999999999987 56654431 21 12244443321 111 1 11111223333347889998
Q ss_pred HHcC-C-EEEEecCCCCCCccCCCCcccChHHHHHHHHHcCCCHHHHHHHHHHh--cC----CEEeecC--CCHHHHHHh
Q 044053 212 KAKG-I-IVTAYSPLGAVGKIYGSNQVLENEALKEIAKAHGKTVAQVSLRWIVE--QG----ATVVVKS--LNLERMKQN 281 (327)
Q Consensus 212 ~~~g-i-~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~~~~s~aq~al~w~l~--~~----~~vi~g~--~~~~~l~en 281 (327)
++.| + ..+. -++-+ ..++.++.+.+.+......-+++.+.+ .+ ...|+|. .+.+.+++.
T Consensus 242 ~~~~~~~~~l~-lglES----------gs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~t 310 (414)
T TIGR01579 242 ASEKRLCPHLH-LSLQS----------GSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQET 310 (414)
T ss_pred HhcCccCCCeE-ECCCc----------CChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHH
Confidence 8764 2 2222 22222 123455555444433334445666665 34 3467774 578888877
Q ss_pred hccc
Q 044053 282 LGIF 285 (327)
Q Consensus 282 l~a~ 285 (327)
++.+
T Consensus 311 l~~i 314 (414)
T TIGR01579 311 LRMV 314 (414)
T ss_pred HHHH
Confidence 7543
No 254
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=21.34 E-value=1.2e+02 Score=20.83 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHcCCccEEEeccc
Q 044053 150 DYRGVWEAMEESQMLGLTKSIGLSNF 175 (327)
Q Consensus 150 ~~~~~~~~l~~l~~~Gkir~iGvS~~ 175 (327)
+...+-..|+.|++.|+|+.+...+.
T Consensus 27 s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 27 SPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp -HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred CHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 35666778999999999999987764
No 255
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=21.33 E-value=30 Score=24.11 Aligned_cols=40 Identities=20% Similarity=0.097 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHHHHHHHHH
Q 044053 39 DTDALKLAVLEAIKLGYRHFDTAAMYG-TEKALGEAIAEAL 78 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~lG~~L~~~~ 78 (327)
+.+.-..+|..++..|.+.-+.|..|| +...|..|++++.
T Consensus 8 s~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 8 SPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQYR 48 (76)
T ss_dssp -HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHHh
Confidence 456677889999999999999999999 9999999999874
No 256
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=21.09 E-value=6.1e+02 Score=22.73 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCc
Q 044053 44 KLAVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEY 120 (327)
Q Consensus 44 ~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d~ 120 (327)
.+.++.|++.|=-.|=.+.||||=++.+.+|... + ..+.+..+- .....+.+-+.+..++.|...
T Consensus 110 ~e~l~~a~~~g~gvIl~t~H~GnwE~~~~~l~~~---~-----~~~~~i~~~----~~n~~~~~~~~~~R~~~g~~~ 174 (295)
T PF03279_consen 110 EEHLEAALAEGRGVILLTGHFGNWELAGRALARR---G-----PPVAVIYRP----QKNPYIDRLLNKLRERFGIEL 174 (295)
T ss_pred HHHHHHHHhcCCCCEEeCcCcChHHHHHHHHHhh---C-----CceEEEecC----CccHhHHHHHHHHHHhcCCeE
Confidence 4567778877766666788999877888888754 2 255555552 123566677777777777443
No 257
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=20.98 E-value=4e+02 Score=20.66 Aligned_cols=61 Identities=5% Similarity=0.082 Sum_probs=43.3
Q ss_pred CCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCC------ceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 044053 86 REQLFITSKLWCQNAHRDHVIPALKKSLSALQME------YLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAME 159 (327)
Q Consensus 86 R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL~~d------~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (327)
|=.+.|+-|+......+..+++.+.++.+.+..+ ..|++++-.+... ..+..++.+.|+
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~---------------~~~~~~l~~~l~ 111 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFE---------------EINFSHLNYELS 111 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcc---------------cCCHHHHHHHHH
Confidence 5678888886655556788999999999887542 5789999987543 234666666666
Q ss_pred HH
Q 044053 160 ES 161 (327)
Q Consensus 160 ~l 161 (327)
.|
T Consensus 112 ~l 113 (118)
T PRK01492 112 KI 113 (118)
T ss_pred HH
Confidence 54
No 258
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.94 E-value=8.1e+02 Score=24.14 Aligned_cols=65 Identities=11% Similarity=-0.063 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHcCCccE----EEeccccHHHHHHHHHhCC-CCCeeeecccCccc--ccHHHHHHHHHcCC
Q 044053 150 DYRGVWEAMEESQMLGLTKS----IGLSNFSCKKIETILTFAT-IPPSINQVEMHPVW--QQRKLIEFCKAKGI 216 (327)
Q Consensus 150 ~~~~~~~~l~~l~~~Gkir~----iGvS~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~--~~~~ll~~~~~~gi 216 (327)
+.++..++++.+++.|..-. +|+-+-+.+.+++.++.+. .++...++ +.+. +..++.+.+++++.
T Consensus 321 t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~--~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 321 TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQANW--LMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEE--EEecCCCCcHHHHHHHhhcc
Confidence 47788899999999986332 3566666777766665432 33333333 3332 34667777777654
No 259
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=20.94 E-value=80 Score=25.18 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCCEEeC
Q 044053 44 KLAVLEAIKLGYRHFDT 60 (327)
Q Consensus 44 ~~~l~~A~~~Gi~~~DT 60 (327)
...+..+++.|+|+||-
T Consensus 31 ~~~i~~qL~~GvR~~di 47 (135)
T smart00148 31 VEGYIQALDHGCRCVEL 47 (135)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 44688999999999984
No 260
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=20.82 E-value=4.3e+02 Score=23.07 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC----CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHH
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTAAMYG----TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSL 113 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL 113 (327)
.++++..++.+.+.+.|..|+=|+..|+ +.+.+-. +++. -+.+ +--|....-.+.+.+.+-++.--
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~-m~~~-------~~~~--~~IKasGGIrt~~~a~~~i~aGA 202 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKL-MRET-------VGPR--VGVKASGGIRTLEDALAMIEAGA 202 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHH-HHHH-------hCCC--ceEEeeCCcCCHHHHHHHHHcCc
Confidence 4577888999999999999999999884 4544433 3332 1222 23343333345677777777766
Q ss_pred HHhCCC
Q 044053 114 SALQME 119 (327)
Q Consensus 114 ~rL~~d 119 (327)
.|+||.
T Consensus 203 ~riGtS 208 (221)
T PRK00507 203 TRLGTS 208 (221)
T ss_pred ceEccC
Confidence 777764
No 261
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=20.78 E-value=6.6e+02 Score=23.06 Aligned_cols=179 Identities=12% Similarity=0.192 Sum_probs=94.8
Q ss_pred ChHHHHHHHHHHHHcC-CC--EEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCcEEEEecc---------CCCCCChhhHH
Q 044053 39 DTDALKLAVLEAIKLG-YR--HFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKL---------WCQNAHRDHVI 106 (327)
Q Consensus 39 ~~~~~~~~l~~A~~~G-i~--~~DTA~~YgsE~~lG~~L~~~~~~g~~~~R~~v~I~tK~---------~~~~~~~~~i~ 106 (327)
+.+...++++...+.+ +. .+.|-+.+-+++.|.. |++. |. +-.|.|.--. ....++.+.+.
T Consensus 86 ~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~-l~~a---G~---~~~v~iG~ES~~d~~L~~~inKg~t~~~~~ 158 (313)
T TIGR01210 86 PKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEE-LRKI---GV---NVEVAVGLETANDRIREKSINKGSTFEDFI 158 (313)
T ss_pred CHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHH-HHHc---CC---CEEEEEecCcCCHHHHHHhhCCCCCHHHHH
Confidence 3455566666666665 32 3344444445666644 5543 41 1134443222 22345667777
Q ss_pred HHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHH---HHHHH
Q 044053 107 PALKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCK---KIETI 183 (327)
Q Consensus 107 ~~le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~---~l~~~ 183 (327)
++++. ++..|.. +-.++|-.+....+ ....++..+.++.+.+-+ .+|.+....+. .+.++
T Consensus 159 ~ai~~-~~~~Gi~-v~~~~i~G~P~~se-------------~ea~ed~~~ti~~~~~l~--~~vs~~~l~v~~gT~l~~~ 221 (313)
T TIGR01210 159 RAAEL-ARKYGAG-VKAYLLFKPPFLSE-------------KEAIADMISSIRKCIPVT--DTVSINPTNVQKGTLVEFL 221 (313)
T ss_pred HHHHH-HHHcCCc-EEEEEEecCCCCCh-------------hhhHHHHHHHHHHHHhcC--CcEEEECCEEeCCCHHHHH
Confidence 77775 4556875 66666665422111 112556666777777665 77777766532 46666
Q ss_pred HHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcc-cChHHHHHHHHHcC
Q 044053 184 LTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQV-LENEALKEIAKAHG 250 (327)
Q Consensus 184 ~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~-~~~~~l~~ia~~~~ 250 (327)
.+...+.|. -++...+++..+++.++.|+. -|.+. |.-.|+.+- .-+..+.+..++++
T Consensus 222 ~~~G~~~pp-------~lws~~e~l~e~~~~~~~~~~-d~~g~-~~~rg~~nc~~c~~~~~~~~~~~~ 280 (313)
T TIGR01210 222 WNRGLYRPP-------WLWSVAEVLKEAKKIGAEVLS-DPVGA-GSDRGAHNCGKCDKRVKEAIRKFS 280 (313)
T ss_pred HHcCCCCCC-------CHHHHHHHHHHHHhhCCeEEe-cCCCC-CCcCCCcCcchhhHHHHHHHHHhc
Confidence 665543321 112235788888888875554 57766 654444331 12344444444443
No 262
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.76 E-value=6.2e+02 Score=22.71 Aligned_cols=121 Identities=12% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCceeEEE---eecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEec---------
Q 044053 106 IPALKKSLSALQMEYLDLYL---VHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLS--------- 173 (327)
Q Consensus 106 ~~~le~SL~rL~~d~iDl~~---lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS--------- 173 (327)
+..+-..|.++|+++|++-. ++..-.... .+..+.++.+.++...-++..+.-+
T Consensus 23 ~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~--------------~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~ 88 (275)
T cd07937 23 MLPIAEALDEAGFFSLEVWGGATFDVCMRFLN--------------EDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHY 88 (275)
T ss_pred HHHHHHHHHHcCCCEEEccCCcchhhhccccC--------------CCHHHHHHHHHHhCCCCceehhcccccccCccCC
Q ss_pred --cccHHHHHHHHHhCCCCCeeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCcccChHHHHHHHHH
Q 044053 174 --NFSCKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKA 248 (327)
Q Consensus 174 --~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ia~~ 248 (327)
+.....++.+.+ +.++..-+-.+.|.+..-.+.+++++++|+.+...-.+.. ......+.+.+++++
T Consensus 89 p~~~~~~di~~~~~-~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~-------~~~~~~~~~~~~~~~ 157 (275)
T cd07937 89 PDDVVELFVEKAAK-NGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTG-------SPVHTLEYYVKLAKE 157 (275)
T ss_pred CcHHHHHHHHHHHH-cCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecC-------CCCCCHHHHHHHHHH
No 263
>PLN02389 biotin synthase
Probab=20.74 E-value=7.4e+02 Score=23.58 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCC-CcC--CH----HHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHH
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTAA-MYG--TE----KALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALK 110 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA~-~Yg--sE----~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le 110 (327)
.+.++..+.++.+.+.|++.|--.. ..+ .+ ..+-+.++.. +...+.|....+. .+ ...-
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i-------k~~~l~i~~s~G~--l~-----~E~l 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI-------RGMGMEVCCTLGM--LE-----KEQA 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH-------hcCCcEEEECCCC--CC-----HHHH
Confidence 4678888888999999999874321 111 22 2344555543 2223444433321 22 2222
Q ss_pred HHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 044053 111 KSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGL 166 (327)
Q Consensus 111 ~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 166 (327)
+.|+..|+|++- |..+.. + ..++.- ....+.++.++.++.+++.|.
T Consensus 182 ~~LkeAGld~~~----~~LeTs-~--~~y~~i---~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 AQLKEAGLTAYN----HNLDTS-R--EYYPNV---ITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHcCCCEEE----eeecCC-h--HHhCCc---CCCCCHHHHHHHHHHHHHcCC
Confidence 334455766543 232211 1 001100 012358899999999999994
No 264
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=20.72 E-value=4.5e+02 Score=22.10 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCCCC
Q 044053 151 YRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFATIP 190 (327)
Q Consensus 151 ~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~ 190 (327)
-+++.+-+++++++| ++-+=+||.+...+..+.+..+++
T Consensus 48 tpe~~~W~~e~k~~g-i~v~vvSNn~e~RV~~~~~~l~v~ 86 (175)
T COG2179 48 TPELRAWLAELKEAG-IKVVVVSNNKESRVARAAEKLGVP 86 (175)
T ss_pred CHHHHHHHHHHHhcC-CEEEEEeCCCHHHHHhhhhhcCCc
Confidence 467888899999998 566778998888877776655443
No 265
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=20.63 E-value=5.3e+02 Score=21.85 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=35.5
Q ss_pred HHHHHHHcCC-ccEEEeccccHHHHHHHHHhCCCCCeeeecccCccccc---HHHHHHHHHcCC
Q 044053 157 AMEESQMLGL-TKSIGLSNFSCKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGI 216 (327)
Q Consensus 157 ~l~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi 216 (327)
.-.-|+..|. |.++|. +-+.+.+.+.+... .|+++.+.+.....- .++++.+++.|.
T Consensus 104 v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~--~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 104 VVTMLRANGFDVIDLGR-DVPIDTVVEKVKKE--KPLMLTGSALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHhCCcEEEECCC-CCCHHHHHHHHHHc--CCCEEEEccccccCHHHHHHHHHHHHHcCC
Confidence 3345667784 888884 45566666666544 455666666544332 667888888853
No 266
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=20.56 E-value=1.5e+02 Score=29.81 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcC---CEEeecCCC-HHHHHHhhcccccccCHHHHHHHhcCCCCCccCCccccCCC
Q 044053 240 EALKEIAKAHGKTVAQVSLRWIVEQG---ATVVVKSLN-LERMKQNLGIFDWKLTDDDYDKINQIPQHRLIPSDFWVSPQ 315 (327)
Q Consensus 240 ~~l~~ia~~~~~s~aq~al~w~l~~~---~~vi~g~~~-~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~ 315 (327)
..+.++.+ .+++|.++.-+-++.+. ...+-|++| .=||-.-.....+.|+-+++++|.+- +|--+-..|.
T Consensus 236 ~~iv~lv~-~~i~prdIlT~~a~~NAi~v~~A~GGSTNavlHL~AIA~eagi~l~l~dfd~is~~-----vP~l~~l~P~ 309 (571)
T PRK06131 236 RRIVEMVH-EDLKPSDILTREAFENAIRVNAAIGGSTNAVIHLIAIAGRAGVELDLDDWDRIGRD-----VPVLVNLQPS 309 (571)
T ss_pred HHHHHHHh-cCCCHHHhcCHHHHHHHHHHhcccCccccHHHHHHHHHHhcCCCCCHHHHHHHhcc-----CCeeEEecCC
Confidence 34444543 47899998888888877 334555655 58888888888889988887777542 3333334566
Q ss_pred CCccccccccC
Q 044053 316 GPFKTLEELWD 326 (327)
Q Consensus 316 ~~~~~~~~~~~ 326 (327)
||| +.||||.
T Consensus 310 G~~-~~~d~~~ 319 (571)
T PRK06131 310 GEY-LMEDFYY 319 (571)
T ss_pred Ccc-cHHHHHH
Confidence 777 7788874
No 267
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.53 E-value=7.1e+02 Score=23.35 Aligned_cols=99 Identities=8% Similarity=0.125 Sum_probs=59.7
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CC---ccEEEecc--ccHHHHHHHHHhCC-CCCeeee
Q 044053 123 LYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQML-GL---TKSIGLSN--FSCKKIETILTFAT-IPPSINQ 195 (327)
Q Consensus 123 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-Gk---ir~iGvS~--~~~~~l~~~~~~~~-~~~~~~q 195 (327)
.+-||.|+....... .|.. .....+++++++.++.++ |+ ++++=+.. -+.++++++.+... .+..++-
T Consensus 215 aiSLhA~~~e~R~~l-~Pi~----~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnL 289 (342)
T PRK14465 215 AISLNHPDPNGRLQI-MDIE----EKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINV 289 (342)
T ss_pred EEEecCCChhhcceE-eecc----ccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEE
Confidence 467888865433111 0111 023578999999977644 33 33554544 34566666655443 3455788
Q ss_pred cccCccccc---------HHHHHHHHHcCCEEEEecCCCC
Q 044053 196 VEMHPVWQQ---------RKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 196 ~~~~~~~~~---------~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
++||+.... ....+..+++||.+......|.
T Consensus 290 IPyN~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 290 IPLNTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 888874321 3466678889999999888864
No 268
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=20.42 E-value=7.9e+02 Score=23.83 Aligned_cols=107 Identities=9% Similarity=0.092 Sum_probs=58.5
Q ss_pred CccEEEec-----cccHHHHHHHHHhCC--CCC---eeeecccCcccccHHHHHHHHHcCCEEEEecCCCCCCccCCCCc
Q 044053 166 LTKSIGLS-----NFSCKKIETILTFAT--IPP---SINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQ 235 (327)
Q Consensus 166 kir~iGvS-----~~~~~~l~~~~~~~~--~~~---~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~~G~l~~~~~ 235 (327)
.|+.|=+. -.+.+++.++++... +++ .-+-++.|+-.-..+.++..++.|+.-+..+.-..
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~--------- 172 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDF--------- 172 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCC---------
Confidence 46666432 234677777766532 111 23445666655568899999999988777654432
Q ss_pred ccChHHHHHHHHHcCCCHHHHHHHHHHhcCC-----EEeec--CCCHHHHHHhhc
Q 044053 236 VLENEALKEIAKAHGKTVAQVSLRWIVEQGA-----TVVVK--SLNLERMKQNLG 283 (327)
Q Consensus 236 ~~~~~~l~~ia~~~~~s~aq~al~w~l~~~~-----~vi~g--~~~~~~l~enl~ 283 (327)
.++.++.+.+.+......-+++.+...|. .+|.| ..|.+++++.++
T Consensus 173 --~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~ 225 (453)
T PRK09249 173 --DPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLE 225 (453)
T ss_pred --CHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHH
Confidence 23344444433333333445555555542 23445 246666666554
No 269
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=20.40 E-value=3.1e+02 Score=23.41 Aligned_cols=67 Identities=22% Similarity=0.219 Sum_probs=43.0
Q ss_pred HHHHHHHcCCccEEEeccccHHHHHHHHHhCCCCCeeeecccC-c--ccccHHHHHHHHHcCCEEEEecCCCC
Q 044053 157 AMEESQMLGLTKSIGLSNFSCKKIETILTFATIPPSINQVEMH-P--VWQQRKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 157 ~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~-~--~~~~~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
...+|...|- ..+-+.-.+.+.|.++++-. +.++.-+... . ......+++.|++.||..+.+|.++.
T Consensus 36 ~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~--d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~ 105 (233)
T PF05368_consen 36 RAQQLQALGA-EVVEADYDDPESLVAALKGV--DAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHHHTTT-EEEES-TT-HHHHHHHHTTC--SEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred hhhhhhcccc-eEeecccCCHHHHHHHHcCC--ceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence 3456666776 45666666788888888743 3334433322 1 22337799999999999999999976
No 270
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=20.39 E-value=6.4e+02 Score=22.71 Aligned_cols=106 Identities=19% Similarity=0.186 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 044053 38 SDTDALKLAVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLS 114 (327)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~ 114 (327)
.+.++...+++.+.+.|+..|.-.. | -..-+-+.++..-+.| -.++.|+|-.. +....-..|.
T Consensus 40 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~iv~~l~~~g----~~~v~i~TNG~--------ll~~~~~~l~ 105 (302)
T TIGR02668 40 LSPEEIERIVRVASEFGVRKVKITG--GEPLLRKDLIEIIRRIKDYG----IKDVSMTTNGI--------LLEKLAKKLK 105 (302)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC--cccccccCHHHHHHHHHhCC----CceEEEEcCch--------HHHHHHHHHH
Confidence 4567888888888899998776432 3 1111223333221112 13677777531 1122334566
Q ss_pred HhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 044053 115 ALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGL 166 (327)
Q Consensus 115 rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 166 (327)
+.|.+.|- +-++.+++..... .. .....+.+++.++.+++.|.
T Consensus 106 ~~g~~~v~-iSld~~~~~~~~~----i~----~~~~~~~vl~~i~~~~~~G~ 148 (302)
T TIGR02668 106 EAGLDRVN-VSLDTLDPEKYKK----IT----GRGALDRVIEGIESAVDAGL 148 (302)
T ss_pred HCCCCEEE-EEecCCCHHHhhh----cc----CCCcHHHHHHHHHHHHHcCC
Confidence 66766554 3344432211000 00 01247788888888888874
No 271
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=20.35 E-value=7.1e+02 Score=23.21 Aligned_cols=36 Identities=6% Similarity=-0.128 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCccEEEeccc-cHHHHHHHHHhCCCC
Q 044053 155 WEAMEESQMLGLTKSIGLSNF-SCKKIETILTFATIP 190 (327)
Q Consensus 155 ~~~l~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~ 190 (327)
|+....+|+.=++-=|++.+. +++.++++++....+
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D 310 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHAD 310 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCC
Confidence 445555565556777777764 688888888766544
No 272
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=20.30 E-value=7.3e+02 Score=23.79 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=71.9
Q ss_pred HHHHHcCCccEEEeccccHHH-HHHHHHhCCCCC-eeeecccCcccccHHHHHHHHHcCCEE---EEecCCCCCCccCCC
Q 044053 159 EESQMLGLTKSIGLSNFSCKK-IETILTFATIPP-SINQVEMHPVWQQRKLIEFCKAKGIIV---TAYSPLGAVGKIYGS 233 (327)
Q Consensus 159 ~~l~~~Gkir~iGvS~~~~~~-l~~~~~~~~~~~-~~~q~~~~~~~~~~~ll~~~~~~gi~v---~a~~pl~~~G~l~~~ 233 (327)
.++.++=.||.+|+-..+-.- -.++.+..+.+. ..+.+-+|+-+-. ==.|-++|..| +.+.||. |+..|.
T Consensus 164 ~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNGA---SicAiknGkSvDTSMGfTPLe--Gl~MGT 238 (396)
T COG0282 164 YELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNGA---SICAIKNGKSVDTSMGFTPLE--GLMMGT 238 (396)
T ss_pred HHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCch---hhhhhhCCeeeccCCCCCccc--ceeccC
Confidence 567777889999998776332 233333333221 3555555554331 11244667766 7788996 565543
Q ss_pred Cc-ccChHHHHHHHHHcCCCHHHHHHHHHHhcCCEEeecCC-CHHHHHHhhcc
Q 044053 234 NQ-VLENEALKEIAKAHGKTVAQVSLRWIVEQGATVVVKSL-NLERMKQNLGI 284 (327)
Q Consensus 234 ~~-~~~~~~l~~ia~~~~~s~aq~al~w~l~~~~~vi~g~~-~~~~l~enl~a 284 (327)
.. -++...+.-++++.|.|..|+.-----..|..=+.|-+ +...++++..-
T Consensus 239 RsGdiDP~ii~~l~~~~~~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~ 291 (396)
T COG0282 239 RSGDIDPGIILYLMEQEGMSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAAE 291 (396)
T ss_pred CCCCCChHHHHHHHHhcCCCHHHHHHHHhhhccccccccccchHHHHHHHhcc
Confidence 32 34556778888999999999655433333445566644 46777666543
No 273
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=20.29 E-value=42 Score=17.47 Aligned_cols=10 Identities=50% Similarity=1.418 Sum_probs=7.5
Q ss_pred CccccccccC
Q 044053 317 PFKTLEELWD 326 (327)
Q Consensus 317 ~~~~~~~~~~ 326 (327)
|+..+|.||+
T Consensus 8 ~~S~lekLW~ 17 (20)
T PF07725_consen 8 PYSKLEKLWE 17 (20)
T ss_pred CCCChHHhcC
Confidence 5667788886
No 274
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.24 E-value=4.3e+02 Score=25.63 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCccEEEeccccHHHHHHHHHhC------CCCCeeeecccCcccc--cHHHHHHHHHcCCEEEEecC
Q 044053 156 EAMEESQMLGLTKSIGLSNFSCKKIETILTFA------TIPPSINQVEMHPVWQ--QRKLIEFCKAKGIIVTAYSP 223 (327)
Q Consensus 156 ~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~------~~~~~~~q~~~~~~~~--~~~ll~~~~~~gi~v~a~~p 223 (327)
+-...+-+.|-+..+|....+++++++.++.. +-++-+|-+ .++-.+ +.++++.|.++||.++..+-
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 33445667899999999999999988776543 234455543 222222 25689999999998776553
No 275
>PLN02775 Probable dihydrodipicolinate reductase
Probab=20.17 E-value=6.1e+02 Score=23.22 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=49.7
Q ss_pred HHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEeccccHHHHHHHHHhCC
Q 044053 109 LKKSLSALQMEYLDLYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSCKKIETILTFAT 188 (327)
Q Consensus 109 le~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~ 188 (327)
+++.|..+.-+|.|++.+..- ..+.+.+.++.+.+.|+--=+|.+.|+.+++.++.+...
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT--------------------~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~ 127 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT--------------------LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESG 127 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC--------------------ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCC
Confidence 445554444457886666532 367788899999999998899999999999988776434
Q ss_pred CCCeeeecccCc
Q 044053 189 IPPSINQVEMHP 200 (327)
Q Consensus 189 ~~~~~~q~~~~~ 200 (327)
+ +.+.--++++
T Consensus 128 i-~vv~apNfSi 138 (286)
T PLN02775 128 V-YAVIAPQMGK 138 (286)
T ss_pred c-cEEEECcccH
Confidence 4 3444445544
No 276
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.13 E-value=7.6e+02 Score=23.52 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=63.1
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CC---ccEEEec--cccHHHHHHHHHhCC-C------
Q 044053 123 LYLVHLPISSKPGEVGFPVPKEDLLPMDYRGVWEAMEESQML-GL---TKSIGLS--NFSCKKIETILTFAT-I------ 189 (327)
Q Consensus 123 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-Gk---ir~iGvS--~~~~~~l~~~~~~~~-~------ 189 (327)
.+-||.|+....... .|... ..+++++++++.+..++ |+ +-|+=+. |-+.++++++.+..+ .
T Consensus 231 AiSLHA~~~e~R~~l-mPin~----~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l 305 (371)
T PRK14461 231 AISLHAPDDALRSEL-MPVNR----RYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPL 305 (371)
T ss_pred EEEeCCCCHHHHHHh-cCccc----CCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCC
Confidence 367999876432110 11111 24589999999887544 43 2233333 445777777766544 3
Q ss_pred CCeeeecccCccccc----------HHHHHHHHHcCCEEEEecCCCC
Q 044053 190 PPSINQVEMHPVWQQ----------RKLIEFCKAKGIIVTAYSPLGA 226 (327)
Q Consensus 190 ~~~~~q~~~~~~~~~----------~~ll~~~~~~gi~v~a~~pl~~ 226 (327)
+..+|-++||+.... ....+..+++||.+......|.
T Consensus 306 ~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 306 LVHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred ceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 567999999996421 4567778899999999988864
No 277
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=20.04 E-value=4.6e+02 Score=21.97 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCCEEeCCCCcC--C--------HHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCCh------h-hH
Q 044053 43 LKLAVLEAIKLGYRHFDTAAMYG--T--------EKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHR------D-HV 105 (327)
Q Consensus 43 ~~~~l~~A~~~Gi~~~DTA~~Yg--s--------E~~lG~~L~~~~~~g~~~~R~~v~I~tK~~~~~~~~------~-~i 105 (327)
..+++++|-+.|+..+-|...+| + |..-|-+-...+..| -.+.+.+.|--+..++.| + -.
T Consensus 123 Taaii~ya~~rG~~TisT~GVFGigeEev~v~~~eeA~gP~~~~lldeg---~~dHilVgTgk~IRD~ePitPyvLdrva 199 (217)
T COG4015 123 TAAIINYAKERGIKTISTNGVFGIGEEEVKVCDAEEAKGPAKFLLLDEG---GPDHILVGTGKFIRDFEPITPYVLDRVA 199 (217)
T ss_pred HHHHHHHHHHcCceEeecCceeecchhheEEeehhhcCccHHHHHHhcC---CCceEEEecCccccCCCCCChhHHHHHH
Confidence 46789999999999999999887 3 333333333333336 347888888765555432 2 22
Q ss_pred HHHHHHHHHHhC
Q 044053 106 IPALKKSLSALQ 117 (327)
Q Consensus 106 ~~~le~SL~rL~ 117 (327)
++-....|+-|.
T Consensus 200 ~~mt~e~Lr~L~ 211 (217)
T COG4015 200 KRMTIECLRILW 211 (217)
T ss_pred HHHHHHHHHHHh
Confidence 344455666654
Done!