Query 044054
Match_columns 400
No_of_seqs 153 out of 905
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 19:12:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do6_A Formate--tetrahydrofola 100.0 2E-168 7E-173 1270.5 18.4 307 28-400 2-308 (543)
2 3pzx_A Formate--tetrahydrofola 100.0 6E-159 2E-163 1206.0 19.7 321 14-400 2-322 (557)
3 2eo2_A Adult MALE hypothalamus 100.0 8.7E-32 3E-36 213.3 5.3 70 172-242 2-71 (71)
4 3cio_A ETK, tyrosine-protein k 97.3 0.00015 5.1E-09 67.5 3.9 52 67-132 102-156 (299)
5 3bfv_A CAPA1, CAPB2, membrane 97.2 0.00021 7.2E-09 65.7 4.1 52 67-132 80-134 (271)
6 3la6_A Tyrosine-protein kinase 97.0 0.00029 9.9E-09 65.6 3.1 52 67-132 90-144 (286)
7 1g3q_A MIND ATPase, cell divis 96.5 0.0012 4E-08 56.9 2.8 50 69-132 2-54 (237)
8 3q9l_A Septum site-determining 96.5 0.0013 4.4E-08 57.2 2.9 50 69-132 2-54 (260)
9 3zq6_A Putative arsenical pump 96.4 0.0015 5.2E-08 61.0 3.4 52 66-132 9-64 (324)
10 1byi_A Dethiobiotin synthase; 96.4 0.0025 8.6E-08 54.5 4.0 24 93-117 12-35 (224)
11 1hyq_A MIND, cell division inh 96.3 0.0017 5.8E-08 57.1 2.8 51 69-133 2-55 (263)
12 3end_A Light-independent proto 96.1 0.0042 1.4E-07 56.4 4.4 42 66-122 38-79 (307)
13 3ea0_A ATPase, para family; al 96.0 0.0059 2E-07 52.6 4.6 49 67-129 2-54 (245)
14 3k9g_A PF-32 protein; ssgcid, 95.6 0.0093 3.2E-07 52.8 4.3 37 67-118 25-61 (267)
15 2ph1_A Nucleotide-binding prot 95.6 0.012 4.2E-07 52.4 5.0 52 67-132 16-70 (262)
16 2wwf_A Thymidilate kinase, put 95.5 0.013 4.3E-07 49.4 4.6 47 67-129 8-54 (212)
17 1wcv_1 SOJ, segregation protei 95.5 0.0094 3.2E-07 52.9 3.8 51 67-131 4-56 (257)
18 4dzz_A Plasmid partitioning pr 95.4 0.012 4.1E-07 49.2 4.0 25 93-118 12-36 (206)
19 2woj_A ATPase GET3; tail-ancho 95.3 0.0058 2E-07 58.5 2.1 39 93-133 28-71 (354)
20 4tmk_A Protein (thymidylate ki 95.2 0.016 5.3E-07 52.1 4.3 42 68-124 2-43 (213)
21 2woo_A ATPase GET3; tail-ancho 95.1 0.0058 2E-07 57.5 1.4 39 93-133 29-70 (329)
22 3fkq_A NTRC-like two-domain pr 95.1 0.013 4.4E-07 55.7 3.7 52 67-132 141-194 (373)
23 1nn5_A Similar to deoxythymidy 95.0 0.025 8.7E-07 47.5 4.8 43 67-125 7-49 (215)
24 3of5_A Dethiobiotin synthetase 94.9 0.018 6.1E-07 51.9 4.0 37 70-122 5-41 (228)
25 3lv8_A DTMP kinase, thymidylat 94.8 0.021 7.3E-07 52.3 4.3 45 67-126 25-69 (236)
26 3io3_A DEHA2D07832P; chaperone 94.8 0.012 3.9E-07 56.8 2.5 52 67-133 16-71 (348)
27 3kjh_A CO dehydrogenase/acetyl 94.8 0.0054 1.8E-07 52.3 0.1 39 93-133 10-51 (254)
28 2oze_A ORF delta'; para, walke 94.7 0.022 7.7E-07 51.1 3.9 39 68-118 33-71 (298)
29 3ug7_A Arsenical pump-driving 94.6 0.027 9.1E-07 53.5 4.3 53 67-133 23-77 (349)
30 3ld9_A DTMP kinase, thymidylat 94.6 0.023 7.8E-07 51.8 3.7 46 66-126 18-64 (223)
31 3qxc_A Dethiobiotin synthetase 94.4 0.036 1.2E-06 51.0 4.7 37 67-117 19-55 (242)
32 2xj4_A MIPZ; replication, cell 94.3 0.032 1.1E-06 50.6 4.1 49 69-131 4-55 (286)
33 3iqw_A Tail-anchored protein t 94.3 0.015 5.1E-07 55.6 2.0 39 93-132 26-66 (334)
34 4edh_A DTMP kinase, thymidylat 94.2 0.04 1.4E-06 49.3 4.4 41 68-124 5-45 (213)
35 3fwy_A Light-independent proto 94.2 0.047 1.6E-06 51.7 5.1 48 68-130 47-94 (314)
36 1ihu_A Arsenical pump-driving 93.9 0.028 9.6E-07 56.3 3.2 50 68-133 7-59 (589)
37 3v9p_A DTMP kinase, thymidylat 93.9 0.047 1.6E-06 49.7 4.4 44 67-126 23-70 (227)
38 3igf_A ALL4481 protein; two-do 93.9 0.01 3.5E-07 58.1 0.0 39 93-133 12-52 (374)
39 3ez2_A Plasmid partition prote 93.8 0.062 2.1E-06 51.0 5.2 52 67-131 106-164 (398)
40 3ez9_A Para; DNA binding, wing 93.6 0.05 1.7E-06 51.8 4.1 52 67-131 109-167 (403)
41 3fgn_A Dethiobiotin synthetase 93.5 0.062 2.1E-06 49.7 4.5 43 60-117 18-60 (251)
42 3cwq_A Para family chromosome 93.5 0.059 2E-06 46.9 4.1 23 93-117 11-33 (209)
43 1cp2_A CP2, nitrogenase iron p 93.4 0.038 1.3E-06 48.6 2.7 25 93-118 11-35 (269)
44 3pg5_A Uncharacterized protein 93.1 0.041 1.4E-06 52.3 2.6 25 93-118 12-36 (361)
45 2plr_A DTMP kinase, probable t 93.1 0.093 3.2E-06 43.7 4.5 38 68-122 3-40 (213)
46 2afh_E Nitrogenase iron protei 93.0 0.045 1.5E-06 49.2 2.7 24 93-117 12-35 (289)
47 2z0h_A DTMP kinase, thymidylat 92.7 0.1 3.5E-06 43.2 4.2 39 71-125 2-40 (197)
48 2yvu_A Probable adenylyl-sulfa 92.0 0.18 6.3E-06 42.1 4.9 42 60-116 4-45 (186)
49 4hlc_A DTMP kinase, thymidylat 91.2 0.16 5.6E-06 44.9 4.0 41 69-126 2-42 (205)
50 2qor_A Guanylate kinase; phosp 91.0 0.15 5E-06 43.7 3.4 47 67-127 10-56 (204)
51 2xxa_A Signal recognition part 90.8 0.2 6.8E-06 49.7 4.6 36 68-118 99-135 (433)
52 1zu4_A FTSY; GTPase, signal re 90.7 0.22 7.5E-06 47.2 4.6 37 67-118 103-139 (320)
53 3tmk_A Thymidylate kinase; pho 90.6 0.2 6.7E-06 45.3 4.0 43 68-129 4-46 (216)
54 4eaq_A DTMP kinase, thymidylat 89.4 0.35 1.2E-05 43.1 4.6 43 67-126 24-66 (229)
55 1qhx_A CPT, protein (chloramph 89.3 0.22 7.4E-06 40.8 2.9 26 69-108 3-28 (178)
56 2ocp_A DGK, deoxyguanosine kin 89.2 0.24 8.3E-06 43.4 3.3 39 68-126 1-39 (241)
57 2v54_A DTMP kinase, thymidylat 89.1 0.24 8.2E-06 41.3 3.1 42 68-127 3-44 (204)
58 2pbr_A DTMP kinase, thymidylat 88.4 0.54 1.9E-05 38.5 4.8 29 93-123 10-38 (195)
59 2rhm_A Putative kinase; P-loop 88.4 0.3 1E-05 40.3 3.2 28 67-108 3-30 (193)
60 1kht_A Adenylate kinase; phosp 88.0 0.35 1.2E-05 39.6 3.3 26 69-108 3-28 (192)
61 3dm5_A SRP54, signal recogniti 87.8 0.48 1.6E-05 47.7 4.8 36 68-118 99-134 (443)
62 1vma_A Cell division protein F 87.5 0.51 1.7E-05 44.6 4.6 36 67-117 102-137 (306)
63 2r8r_A Sensor protein; KDPD, P 87.3 0.72 2.5E-05 42.9 5.4 42 67-122 3-44 (228)
64 1g5t_A COB(I)alamin adenosyltr 87.2 0.61 2.1E-05 42.4 4.7 37 66-118 26-62 (196)
65 2vli_A Antibiotic resistance p 87.2 0.32 1.1E-05 39.8 2.7 27 68-108 4-30 (183)
66 2pez_A Bifunctional 3'-phospho 86.8 0.58 2E-05 38.8 4.0 35 67-116 3-37 (179)
67 2px0_A Flagellar biosynthesis 86.5 0.73 2.5E-05 43.0 5.0 38 67-118 103-140 (296)
68 3tau_A Guanylate kinase, GMP k 86.5 0.43 1.5E-05 41.2 3.2 45 67-125 6-50 (208)
69 3a4m_A L-seryl-tRNA(SEC) kinas 86.3 0.57 2E-05 42.0 4.0 34 68-116 3-36 (260)
70 3kl4_A SRP54, signal recogniti 85.9 0.65 2.2E-05 46.4 4.6 35 68-117 96-130 (433)
71 1xjc_A MOBB protein homolog; s 85.8 0.91 3.1E-05 39.9 5.0 39 70-123 5-43 (169)
72 3hjn_A DTMP kinase, thymidylat 85.5 0.44 1.5E-05 41.7 2.8 30 93-124 10-39 (197)
73 1ls1_A Signal recognition part 85.0 0.79 2.7E-05 42.6 4.4 36 68-118 97-132 (295)
74 3a00_A Guanylate kinase, GMP k 85.0 0.76 2.6E-05 38.7 4.0 35 93-127 11-45 (186)
75 2c95_A Adenylate kinase 1; tra 85.0 0.57 2E-05 38.6 3.1 27 68-108 8-34 (196)
76 3cm0_A Adenylate kinase; ATP-b 84.9 0.49 1.7E-05 39.0 2.7 27 68-108 3-29 (186)
77 3vaa_A Shikimate kinase, SK; s 84.8 0.62 2.1E-05 39.6 3.3 27 67-107 23-49 (199)
78 3trf_A Shikimate kinase, SK; a 84.6 0.59 2E-05 38.5 3.0 26 68-107 4-29 (185)
79 1yrb_A ATP(GTP)binding protein 84.6 0.7 2.4E-05 40.1 3.6 29 93-123 24-52 (262)
80 1tev_A UMP-CMP kinase; ploop, 84.5 0.56 1.9E-05 38.3 2.9 26 69-108 3-28 (196)
81 1nks_A Adenylate kinase; therm 84.4 0.94 3.2E-05 36.9 4.2 31 70-115 2-32 (194)
82 2b8t_A Thymidine kinase; deoxy 84.1 0.96 3.3E-05 41.1 4.5 44 67-127 10-53 (223)
83 1gtv_A TMK, thymidylate kinase 84.1 0.39 1.3E-05 40.3 1.8 29 93-123 10-38 (214)
84 1knq_A Gluconate kinase; ALFA/ 83.6 0.83 2.8E-05 37.4 3.5 27 67-107 6-32 (175)
85 2ffh_A Protein (FFH); SRP54, s 83.6 1 3.5E-05 44.9 4.8 35 68-117 97-131 (425)
86 1of1_A Thymidine kinase; trans 83.2 0.55 1.9E-05 46.5 2.7 39 67-123 47-85 (376)
87 3kb2_A SPBC2 prophage-derived 83.2 0.72 2.5E-05 37.0 2.9 16 93-108 11-26 (173)
88 1j8m_F SRP54, signal recogniti 83.0 1.1 3.9E-05 41.8 4.6 35 69-118 98-132 (297)
89 1m7g_A Adenylylsulfate kinase; 82.9 1.3 4.3E-05 38.0 4.5 36 67-116 23-58 (211)
90 2j41_A Guanylate kinase; GMP, 82.8 0.91 3.1E-05 37.7 3.5 43 67-123 4-46 (207)
91 1e6c_A Shikimate kinase; phosp 82.5 0.68 2.3E-05 37.5 2.6 25 70-108 3-27 (173)
92 1y63_A LMAJ004144AAA protein; 82.2 0.84 2.9E-05 38.4 3.1 26 67-106 8-33 (184)
93 4eun_A Thermoresistant glucoki 82.1 0.93 3.2E-05 38.5 3.4 27 67-107 27-53 (200)
94 3uie_A Adenylyl-sulfate kinase 82.1 0.91 3.1E-05 38.6 3.3 33 67-114 23-55 (200)
95 1e2k_A Thymidine kinase; trans 82.1 0.52 1.8E-05 45.6 2.0 39 67-123 2-40 (331)
96 2cdn_A Adenylate kinase; phosp 81.8 1.1 3.9E-05 37.7 3.7 28 67-108 18-45 (201)
97 1a7j_A Phosphoribulokinase; tr 81.7 1.4 4.7E-05 40.9 4.6 27 68-108 4-30 (290)
98 3lnc_A Guanylate kinase, GMP k 81.3 0.84 2.9E-05 39.6 2.8 46 67-127 25-71 (231)
99 1ihu_A Arsenical pump-driving 81.2 1.2 4.1E-05 44.6 4.3 37 93-130 337-375 (589)
100 2v3c_C SRP54, signal recogniti 81.1 1 3.6E-05 44.6 3.7 34 69-117 99-132 (432)
101 3t61_A Gluconokinase; PSI-biol 81.0 0.96 3.3E-05 38.2 3.0 26 68-107 17-42 (202)
102 1qf9_A UMP/CMP kinase, protein 80.8 1.1 3.9E-05 36.4 3.3 27 68-108 5-31 (194)
103 3iij_A Coilin-interacting nucl 80.6 0.93 3.2E-05 37.4 2.8 26 68-107 10-35 (180)
104 2bwj_A Adenylate kinase 5; pho 80.6 1.1 3.6E-05 37.1 3.1 27 68-108 11-37 (199)
105 1xx6_A Thymidine kinase; NESG, 80.5 1.7 5.8E-05 38.4 4.5 46 67-129 6-51 (191)
106 2jaq_A Deoxyguanosine kinase; 80.0 1.2 4E-05 36.8 3.2 16 93-108 10-25 (205)
107 1p6x_A Thymidine kinase; P-loo 79.9 0.66 2.2E-05 45.0 1.9 40 67-123 5-44 (334)
108 1aky_A Adenylate kinase; ATP:A 79.5 1.2 4.1E-05 38.2 3.2 27 68-108 3-29 (220)
109 1kag_A SKI, shikimate kinase I 79.4 0.92 3.1E-05 36.9 2.3 25 69-107 4-28 (173)
110 1kgd_A CASK, peripheral plasma 79.4 1.5 5.3E-05 36.7 3.8 44 68-125 4-47 (180)
111 1osn_A Thymidine kinase, VZV-T 79.1 0.7 2.4E-05 45.0 1.8 39 67-122 10-49 (341)
112 1np6_A Molybdopterin-guanine d 78.7 2.5 8.4E-05 36.8 4.9 38 70-122 7-44 (174)
113 1ukz_A Uridylate kinase; trans 78.6 1.2 4.1E-05 37.4 2.8 28 67-108 13-40 (203)
114 1lvg_A Guanylate kinase, GMP k 78.2 1.4 5E-05 37.8 3.3 45 68-126 3-47 (198)
115 2orw_A Thymidine kinase; TMTK, 77.8 2.2 7.5E-05 36.8 4.3 43 69-128 3-45 (184)
116 3be4_A Adenylate kinase; malar 77.7 1.1 3.9E-05 38.5 2.5 27 67-107 3-29 (217)
117 1zp6_A Hypothetical protein AT 76.9 1.4 4.7E-05 36.4 2.7 26 67-106 7-32 (191)
118 3tr0_A Guanylate kinase, GMP k 76.5 2 7E-05 35.7 3.6 27 67-107 5-31 (205)
119 3ney_A 55 kDa erythrocyte memb 76.1 2.3 7.8E-05 38.1 4.1 46 67-126 17-62 (197)
120 1gvn_B Zeta; postsegregational 76.0 1.9 6.5E-05 39.7 3.6 27 67-107 31-57 (287)
121 1zak_A Adenylate kinase; ATP:A 75.9 1.4 4.9E-05 37.7 2.6 28 67-108 3-30 (222)
122 2iyv_A Shikimate kinase, SK; t 75.8 1.4 4.7E-05 36.4 2.4 16 93-108 12-27 (184)
123 2j9r_A Thymidine kinase; TK1, 75.7 3.1 0.0001 38.3 4.9 46 67-129 26-71 (214)
124 3jvv_A Twitching mobility prot 75.7 2.2 7.4E-05 41.2 4.1 42 68-124 122-163 (356)
125 2ze6_A Isopentenyl transferase 75.2 1.5 5.2E-05 39.4 2.7 16 93-108 11-26 (253)
126 3a8t_A Adenylate isopentenyltr 74.6 1.1 3.7E-05 43.9 1.7 28 67-108 38-65 (339)
127 1zuh_A Shikimate kinase; alpha 74.4 2 7E-05 34.9 3.1 16 93-108 17-32 (168)
128 3c8u_A Fructokinase; YP_612366 74.2 1.7 5.9E-05 37.2 2.7 28 67-108 20-47 (208)
129 1p5z_B DCK, deoxycytidine kina 74.1 1 3.5E-05 40.0 1.3 36 67-122 22-57 (263)
130 2p5t_B PEZT; postsegregational 74.1 1.9 6.5E-05 38.3 3.0 29 66-108 29-57 (253)
131 3lw7_A Adenylate kinase relate 73.8 1.8 6.2E-05 34.1 2.6 20 70-103 2-21 (179)
132 2j37_W Signal recognition part 73.8 2.7 9.2E-05 42.8 4.4 24 93-117 111-134 (504)
133 1zd8_A GTP:AMP phosphotransfer 73.8 1.7 5.7E-05 37.5 2.5 26 68-107 6-31 (227)
134 1rz3_A Hypothetical protein rb 73.3 3.5 0.00012 35.1 4.4 28 67-108 20-47 (201)
135 3p32_A Probable GTPase RV1496/ 73.3 4.2 0.00014 38.3 5.3 42 67-123 77-118 (355)
136 1ak2_A Adenylate kinase isoenz 72.8 2.6 8.9E-05 36.7 3.5 28 67-108 14-41 (233)
137 3e1s_A Exodeoxyribonuclease V, 72.8 3.3 0.00011 42.3 4.7 36 68-118 203-238 (574)
138 2pt5_A Shikimate kinase, SK; a 72.0 2.6 8.7E-05 34.0 3.1 16 93-108 10-25 (168)
139 3bos_A Putative DNA replicatio 71.9 3.4 0.00012 34.4 3.9 41 59-114 42-82 (242)
140 3ec2_A DNA replication protein 71.7 2.5 8.7E-05 34.9 3.0 34 67-114 36-69 (180)
141 2p67_A LAO/AO transport system 71.5 4.6 0.00016 37.9 5.1 42 67-123 54-95 (341)
142 4a0g_A Adenosylmethionine-8-am 70.5 2.9 9.8E-05 44.7 3.9 29 69-111 34-62 (831)
143 2bbw_A Adenylate kinase 4, AK4 70.1 2.9 9.9E-05 36.6 3.2 27 68-108 26-52 (246)
144 1ly1_A Polynucleotide kinase; 69.8 2.5 8.6E-05 34.1 2.5 22 70-105 3-24 (181)
145 2qmh_A HPR kinase/phosphorylas 69.7 2.4 8.2E-05 39.1 2.7 40 68-121 33-72 (205)
146 1x6v_B Bifunctional 3'-phospho 69.3 4.5 0.00015 42.5 4.9 35 68-117 51-85 (630)
147 2dr3_A UPF0273 protein PH0284; 69.2 4 0.00014 34.6 3.8 35 67-116 21-55 (247)
148 1vht_A Dephospho-COA kinase; s 68.2 3 0.0001 35.5 2.8 23 69-105 4-26 (218)
149 3asz_A Uridine kinase; cytidin 67.9 3.4 0.00012 34.8 3.1 28 67-108 4-31 (211)
150 2w0m_A SSO2452; RECA, SSPF, un 67.3 6.6 0.00022 32.6 4.7 27 67-107 21-47 (235)
151 2qt1_A Nicotinamide riboside k 66.9 2.8 9.6E-05 35.4 2.4 27 67-107 19-45 (207)
152 1q3t_A Cytidylate kinase; nucl 65.7 4.3 0.00015 35.4 3.4 28 66-107 13-40 (236)
153 3ake_A Cytidylate kinase; CMP 64.5 4.4 0.00015 33.6 3.1 16 93-108 12-27 (208)
154 1m8p_A Sulfate adenylyltransfe 64.0 5.7 0.00019 40.7 4.4 34 67-115 394-428 (573)
155 4e22_A Cytidylate kinase; P-lo 63.7 4.3 0.00015 36.2 3.1 28 67-108 25-52 (252)
156 1u94_A RECA protein, recombina 63.3 5.3 0.00018 38.5 3.8 43 59-116 50-95 (356)
157 3e70_C DPA, signal recognition 62.7 7.9 0.00027 36.9 4.9 37 66-117 126-162 (328)
158 3nwj_A ATSK2; P loop, shikimat 62.5 4.1 0.00014 37.3 2.7 26 69-108 48-73 (250)
159 1via_A Shikimate kinase; struc 62.2 3.2 0.00011 34.1 1.8 16 93-108 14-29 (175)
160 2if2_A Dephospho-COA kinase; a 61.8 4.2 0.00014 34.1 2.5 14 93-107 11-24 (204)
161 1uj2_A Uridine-cytidine kinase 61.5 4.2 0.00014 35.9 2.6 25 70-108 23-47 (252)
162 1g8f_A Sulfate adenylyltransfe 60.4 4.5 0.00015 41.3 2.9 28 67-108 393-420 (511)
163 2bdt_A BH3686; alpha-beta prot 60.4 4.1 0.00014 33.8 2.2 15 93-107 12-26 (189)
164 1htw_A HI0065; nucleotide-bind 60.2 5.4 0.00018 33.9 2.9 27 67-107 31-57 (158)
165 1ojl_A Transcriptional regulat 60.2 1.8 6.3E-05 40.0 -0.0 143 93-255 35-227 (304)
166 3tlx_A Adenylate kinase 2; str 59.6 6 0.00021 35.1 3.2 27 67-107 27-53 (243)
167 2obn_A Hypothetical protein; s 58.9 7.4 0.00025 38.2 4.0 37 67-117 150-186 (349)
168 2xb4_A Adenylate kinase; ATP-b 58.8 6 0.00021 34.3 3.0 25 93-122 10-38 (223)
169 2ewv_A Twitching motility prot 57.9 10 0.00035 36.3 4.8 41 67-122 134-174 (372)
170 2grj_A Dephospho-COA kinase; T 57.9 5.5 0.00019 34.8 2.7 26 68-107 11-36 (192)
171 2eyu_A Twitching motility prot 57.7 6.9 0.00023 35.7 3.3 35 59-108 16-50 (261)
172 3d3q_A TRNA delta(2)-isopenten 57.3 5.1 0.00017 39.0 2.6 25 70-108 8-32 (340)
173 3exa_A TRNA delta(2)-isopenten 57.2 4.9 0.00017 39.3 2.4 26 69-108 3-28 (322)
174 3foz_A TRNA delta(2)-isopenten 57.0 5.7 0.0002 38.6 2.8 28 67-108 8-35 (316)
175 1jbk_A CLPB protein; beta barr 56.7 9.2 0.00032 30.1 3.5 28 67-108 41-68 (195)
176 1rj9_A FTSY, signal recognitio 56.6 13 0.00044 34.9 5.1 36 67-117 100-135 (304)
177 3e2i_A Thymidine kinase; Zn-bi 56.4 9.4 0.00032 35.4 4.0 47 67-130 26-72 (219)
178 2vp4_A Deoxynucleoside kinase; 56.1 4.9 0.00017 35.1 2.0 37 67-123 18-54 (230)
179 2g0t_A Conserved hypothetical 56.0 13 0.00045 36.4 5.2 37 67-117 167-203 (350)
180 2kjq_A DNAA-related protein; s 55.3 16 0.00053 30.4 4.9 32 68-114 35-66 (149)
181 1uf9_A TT1252 protein; P-loop, 54.8 7.7 0.00026 32.0 2.9 23 69-105 8-30 (203)
182 1p9r_A General secretion pathw 54.8 10 0.00036 37.4 4.3 40 67-122 165-204 (418)
183 1w36_D RECD, exodeoxyribonucle 54.7 11 0.00036 38.6 4.5 27 68-108 163-189 (608)
184 3b9q_A Chloroplast SRP recepto 54.6 12 0.00042 34.9 4.6 35 67-116 98-132 (302)
185 2jeo_A Uridine-cytidine kinase 54.6 8.4 0.00029 33.8 3.3 28 67-108 23-50 (245)
186 2vf7_A UVRA2, excinuclease ABC 54.4 4.4 0.00015 43.9 1.7 22 67-102 34-55 (842)
187 3crm_A TRNA delta(2)-isopenten 54.3 5.6 0.00019 38.4 2.2 26 69-108 5-30 (323)
188 2gks_A Bifunctional SAT/APS ki 54.0 9.8 0.00034 38.7 4.1 33 68-115 371-403 (546)
189 2zts_A Putative uncharacterize 53.8 13 0.00045 31.3 4.3 46 58-117 17-64 (251)
190 2p65_A Hypothetical protein PF 53.7 8.3 0.00028 30.6 2.8 28 67-108 41-68 (187)
191 2a5y_B CED-4; apoptosis; HET: 53.4 9.8 0.00034 37.7 3.9 69 39-123 123-196 (549)
192 3aez_A Pantothenate kinase; tr 53.0 15 0.00051 34.5 4.9 29 66-108 87-115 (312)
193 1s96_A Guanylate kinase, GMP k 52.5 8.8 0.0003 34.1 3.1 27 67-107 14-40 (219)
194 1d2n_A N-ethylmaleimide-sensit 52.4 8.5 0.00029 33.9 3.0 27 67-107 62-88 (272)
195 3fb4_A Adenylate kinase; psych 51.7 7.7 0.00026 32.7 2.5 16 93-108 10-25 (216)
196 2gk6_A Regulator of nonsense t 51.5 14 0.00049 37.5 4.8 36 69-118 195-230 (624)
197 3kta_A Chromosome segregation 51.0 9.5 0.00033 31.2 2.9 24 71-108 28-51 (182)
198 3eph_A TRNA isopentenyltransfe 50.8 8.1 0.00028 38.8 2.9 25 70-108 3-27 (409)
199 2f6r_A COA synthase, bifunctio 50.7 9.8 0.00033 34.7 3.2 22 69-104 75-96 (281)
200 1ltq_A Polynucleotide kinase; 50.6 8.1 0.00028 34.4 2.5 24 70-107 3-26 (301)
201 3zvl_A Bifunctional polynucleo 50.3 6.9 0.00023 37.9 2.2 27 67-107 256-282 (416)
202 3dl0_A Adenylate kinase; phosp 49.6 7.5 0.00026 32.9 2.1 15 93-107 10-24 (216)
203 1njg_A DNA polymerase III subu 48.8 13 0.00043 30.2 3.2 26 69-108 45-70 (250)
204 4gp7_A Metallophosphoesterase; 48.7 6.5 0.00022 32.8 1.5 22 67-102 7-28 (171)
205 3tqc_A Pantothenate kinase; bi 48.6 15 0.00051 35.1 4.2 34 93-150 102-135 (321)
206 1sq5_A Pantothenate kinase; P- 48.5 12 0.00041 34.5 3.4 27 67-107 78-104 (308)
207 2ehv_A Hypothetical protein PH 48.5 9.2 0.00031 32.4 2.4 25 67-105 28-52 (251)
208 2axn_A 6-phosphofructo-2-kinas 48.1 16 0.00055 36.8 4.5 32 69-115 35-66 (520)
209 2og2_A Putative signal recogni 47.8 17 0.0006 35.2 4.6 36 67-117 155-190 (359)
210 1ex7_A Guanylate kinase; subst 47.7 10 0.00036 33.3 2.8 34 93-126 11-44 (186)
211 2wsm_A Hydrogenase expression/ 47.3 19 0.00064 30.2 4.1 25 70-108 31-55 (221)
212 2cvh_A DNA repair and recombin 47.1 12 0.00042 31.1 3.0 26 66-105 17-42 (220)
213 1n0w_A DNA repair protein RAD5 47.0 10 0.00035 32.0 2.5 26 67-106 22-47 (243)
214 1odf_A YGR205W, hypothetical 3 46.9 14 0.00047 34.4 3.5 28 67-108 29-56 (290)
215 1cr0_A DNA primase/helicase; R 46.8 28 0.00096 31.1 5.5 28 67-108 33-60 (296)
216 1xp8_A RECA protein, recombina 46.5 20 0.00067 34.7 4.7 55 58-127 60-117 (366)
217 3czq_A Putative polyphosphate 46.5 7 0.00024 37.8 1.5 42 66-123 83-124 (304)
218 3uk6_A RUVB-like 2; hexameric 45.9 10 0.00036 34.4 2.6 48 47-108 46-95 (368)
219 2w58_A DNAI, primosome compone 45.9 14 0.00049 30.7 3.2 30 70-114 55-84 (202)
220 3upu_A ATP-dependent DNA helic 45.6 12 0.00041 36.3 3.1 31 71-116 47-77 (459)
221 1s1m_A CTP synthase; CTP synth 45.5 18 0.00062 37.5 4.5 40 70-122 4-43 (545)
222 3pih_A Uvrabc system protein A 45.0 8 0.00027 42.3 1.9 23 67-103 22-44 (916)
223 1nlf_A Regulatory protein REPA 44.8 22 0.00074 31.7 4.4 27 67-107 28-54 (279)
224 2orv_A Thymidine kinase; TP4A 44.8 22 0.00074 33.3 4.5 46 67-129 17-62 (234)
225 3hr8_A Protein RECA; alpha and 43.8 22 0.00074 34.6 4.5 79 31-126 15-103 (356)
226 3lk7_A UDP-N-acetylmuramoylala 43.7 19 0.00066 35.0 4.2 31 69-116 112-142 (451)
227 2ygr_A Uvrabc system protein A 43.7 7.9 0.00027 42.9 1.6 22 67-102 44-65 (993)
228 2zr9_A Protein RECA, recombina 42.9 18 0.00061 34.5 3.7 54 59-127 48-104 (349)
229 1z6g_A Guanylate kinase; struc 42.5 12 0.00041 32.6 2.3 27 67-107 21-47 (218)
230 1wi9_A Protein C20ORF116 homol 42.1 14 0.00049 29.4 2.4 25 21-45 14-38 (72)
231 1cke_A CK, MSSA, protein (cyti 42.1 11 0.00037 31.9 1.9 15 93-107 15-29 (227)
232 1vco_A CTP synthetase; tetrame 42.0 22 0.00075 36.9 4.5 41 69-122 12-52 (550)
233 3bh0_A DNAB-like replicative h 42.0 25 0.00087 32.5 4.5 64 27-107 26-92 (315)
234 2r6f_A Excinuclease ABC subuni 41.6 9.1 0.00031 42.4 1.7 22 67-102 42-63 (972)
235 2wjy_A Regulator of nonsense t 40.7 25 0.00086 37.5 4.8 35 69-117 371-405 (800)
236 3k1j_A LON protease, ATP-depen 40.3 5.9 0.0002 40.1 -0.0 44 46-108 42-85 (604)
237 4b3f_X DNA-binding protein smu 39.8 17 0.00057 37.0 3.2 25 93-118 215-239 (646)
238 1e4v_A Adenylate kinase; trans 39.5 11 0.00036 32.2 1.4 15 93-107 10-24 (214)
239 2qby_A CDC6 homolog 1, cell di 38.9 38 0.0013 30.2 5.0 28 67-108 43-70 (386)
240 3cr8_A Sulfate adenylyltranfer 38.5 12 0.00041 38.4 1.9 28 67-108 367-394 (552)
241 1jjv_A Dephospho-COA kinase; P 38.4 9 0.00031 32.2 0.8 13 93-105 12-24 (206)
242 3fdi_A Uncharacterized protein 38.4 11 0.00039 32.7 1.5 16 93-108 16-31 (201)
243 2yhs_A FTSY, cell division pro 38.2 29 0.00098 35.8 4.6 36 67-117 291-326 (503)
244 3syl_A Protein CBBX; photosynt 38.1 26 0.00087 31.0 3.8 66 27-112 18-95 (309)
245 2r6a_A DNAB helicase, replicat 38.1 33 0.0011 33.3 4.9 37 58-108 191-228 (454)
246 1w78_A FOLC bifunctional prote 37.7 31 0.001 33.0 4.5 33 67-116 47-79 (422)
247 4a74_A DNA repair and recombin 37.5 15 0.00053 30.6 2.1 27 67-107 23-49 (231)
248 2qgz_A Helicase loader, putati 37.3 21 0.00071 33.1 3.2 33 69-115 152-184 (308)
249 2xzl_A ATP-dependent helicase 36.6 30 0.001 36.9 4.6 36 69-118 375-410 (802)
250 3eag_A UDP-N-acetylmuramate:L- 36.2 23 0.00079 32.9 3.3 31 69-116 108-138 (326)
251 3bbn_M Ribosomal protein S13; 36.1 8.6 0.0003 34.1 0.4 25 208-232 79-103 (145)
252 2v1u_A Cell division control p 36.1 28 0.00096 31.1 3.7 28 67-108 42-69 (387)
253 3chm_A COP9 signalosome comple 36.0 27 0.00093 30.8 3.6 56 21-86 102-166 (169)
254 1vi1_A Fatty acid/phospholipid 35.4 8 0.00027 37.4 0.0 26 345-370 280-312 (345)
255 2qby_B CDC6 homolog 3, cell di 35.3 29 0.001 31.4 3.8 48 47-108 22-70 (384)
256 2www_A Methylmalonic aciduria 35.1 49 0.0017 31.2 5.4 43 67-124 72-114 (349)
257 2gza_A Type IV secretion syste 34.7 14 0.00048 35.1 1.6 27 67-107 173-199 (361)
258 1svm_A Large T antigen; AAA+ f 34.5 26 0.00089 34.1 3.5 28 66-107 166-193 (377)
259 1bif_A 6-phosphofructo-2-kinas 34.3 35 0.0012 33.3 4.4 34 69-117 39-72 (469)
260 2q6t_A DNAB replication FORK h 33.8 37 0.0013 32.9 4.4 37 58-108 188-225 (444)
261 1znw_A Guanylate kinase, GMP k 32.8 27 0.00091 29.7 2.9 27 67-107 18-44 (207)
262 2r2a_A Uncharacterized protein 32.6 33 0.0011 30.2 3.5 15 93-107 15-29 (199)
263 4a1f_A DNAB helicase, replicat 32.6 43 0.0015 32.2 4.6 44 57-115 33-77 (338)
264 3r20_A Cytidylate kinase; stru 32.4 18 0.00062 33.0 1.9 16 93-108 19-34 (233)
265 3bgw_A DNAB-like replicative h 32.3 43 0.0015 33.0 4.6 43 58-115 185-228 (444)
266 2f1r_A Molybdopterin-guanine d 32.2 16 0.00056 31.4 1.5 21 93-114 12-32 (171)
267 3fvq_A Fe(3+) IONS import ATP- 32.2 31 0.0011 33.6 3.6 24 67-104 28-51 (359)
268 2h92_A Cytidylate kinase; ross 32.1 17 0.00057 30.7 1.5 15 93-107 13-27 (219)
269 1q57_A DNA primase/helicase; d 32.0 34 0.0012 33.4 3.9 37 58-108 230-267 (503)
270 3umf_A Adenylate kinase; rossm 31.9 32 0.0011 30.9 3.4 28 67-108 27-54 (217)
271 3tqf_A HPR(Ser) kinase; transf 31.8 26 0.00088 31.9 2.7 25 68-106 15-39 (181)
272 3nrs_A Dihydrofolate:folylpoly 30.1 42 0.0014 32.7 4.1 39 60-115 42-81 (437)
273 3rlf_A Maltose/maltodextrin im 29.8 37 0.0013 33.3 3.7 24 67-104 27-50 (381)
274 2chg_A Replication factor C sm 29.8 23 0.00077 28.5 1.8 23 72-108 41-63 (226)
275 3qf7_A RAD50; ABC-ATPase, ATPa 29.3 34 0.0012 32.5 3.2 25 68-107 23-47 (365)
276 1fnn_A CDC6P, cell division co 29.2 35 0.0012 30.8 3.1 24 71-108 46-69 (389)
277 3hdt_A Putative kinase; struct 28.3 23 0.00079 31.8 1.8 16 93-108 24-39 (223)
278 3m6a_A ATP-dependent protease 27.8 26 0.00089 35.2 2.3 48 47-108 83-133 (543)
279 1z6t_A APAF-1, apoptotic prote 27.2 59 0.002 31.7 4.6 68 38-122 117-190 (591)
280 2oap_1 GSPE-2, type II secreti 27.1 23 0.00078 35.8 1.7 26 68-107 259-284 (511)
281 2z43_A DNA repair and recombin 26.8 43 0.0015 30.9 3.4 27 67-107 105-131 (324)
282 1sxj_C Activator 1 40 kDa subu 26.7 26 0.00089 32.0 1.9 16 93-108 56-71 (340)
283 1o5z_A Folylpolyglutamate synt 25.9 53 0.0018 32.0 4.0 39 68-124 51-89 (442)
284 1jbw_A Folylpolyglutamate synt 25.8 61 0.0021 31.1 4.3 39 68-124 38-76 (428)
285 2qz4_A Paraplegin; AAA+, SPG7, 25.7 29 0.00099 29.7 1.9 16 93-108 49-64 (262)
286 1l8q_A Chromosomal replication 25.6 38 0.0013 30.6 2.7 26 69-108 37-62 (324)
287 3ux8_A Excinuclease ABC, A sub 25.5 27 0.00091 35.7 1.9 51 67-132 42-101 (670)
288 2i3b_A HCR-ntpase, human cance 25.3 39 0.0013 29.3 2.6 15 93-107 11-25 (189)
289 2x5o_A UDP-N-acetylmuramoylala 25.3 63 0.0022 31.2 4.4 32 69-117 104-135 (439)
290 3ll9_A Isopentenyl phosphate k 24.8 16 0.00054 33.7 0.1 14 340-353 42-56 (269)
291 3cf0_A Transitional endoplasmi 24.7 48 0.0016 30.1 3.2 27 67-107 47-73 (301)
292 1v5w_A DMC1, meiotic recombina 24.5 57 0.0019 30.6 3.8 28 66-107 119-146 (343)
293 3czp_A Putative polyphosphate 24.4 42 0.0014 34.3 3.1 43 66-124 40-82 (500)
294 1sxj_D Activator 1 41 kDa subu 24.3 30 0.001 30.9 1.8 16 93-108 68-83 (353)
295 1ixz_A ATP-dependent metallopr 24.1 28 0.00095 30.2 1.5 15 93-107 59-73 (254)
296 4fcw_A Chaperone protein CLPB; 24.0 32 0.0011 30.3 1.9 16 93-108 57-72 (311)
297 1iqp_A RFCS; clamp loader, ext 23.7 32 0.0011 30.2 1.8 16 93-108 56-71 (327)
298 1sxj_E Activator 1 40 kDa subu 23.7 26 0.0009 31.6 1.3 15 93-107 46-60 (354)
299 3t15_A Ribulose bisphosphate c 23.6 32 0.0011 31.3 1.9 26 69-108 36-61 (293)
300 1tf7_A KAIC; homohexamer, hexa 23.4 80 0.0027 31.2 4.8 34 67-115 279-312 (525)
301 1ofh_A ATP-dependent HSL prote 23.4 34 0.0011 29.9 1.9 16 93-108 60-75 (310)
302 1e8c_A UDP-N-acetylmuramoylala 23.4 58 0.002 32.1 3.8 32 68-116 107-138 (498)
303 2o38_A Hypothetical protein; a 23.3 23 0.0008 28.9 0.8 67 25-91 50-117 (120)
304 2r62_A Cell division protease 23.2 34 0.0012 29.7 1.8 16 93-108 54-69 (268)
305 1lv7_A FTSH; alpha/beta domain 23.1 34 0.0012 29.7 1.9 15 93-107 55-69 (257)
306 3h4m_A Proteasome-activating n 23.0 31 0.001 30.2 1.6 25 69-107 51-75 (285)
307 2ga8_A Hypothetical 39.9 kDa p 22.7 34 0.0011 33.8 1.9 16 93-108 34-49 (359)
308 1knx_A Probable HPR(Ser) kinas 22.7 38 0.0013 32.7 2.2 24 68-105 146-169 (312)
309 2pt7_A CAG-ALFA; ATPase, prote 22.4 27 0.00093 32.9 1.2 26 68-107 170-195 (330)
310 4ag6_A VIRB4 ATPase, type IV s 22.3 97 0.0033 29.0 4.9 25 93-118 45-69 (392)
311 1g29_1 MALK, maltose transport 22.2 53 0.0018 31.9 3.2 24 67-104 27-50 (372)
312 2v6i_A RNA helicase; membrane, 22.1 96 0.0033 29.8 4.9 35 69-118 2-37 (431)
313 2qm8_A GTPase/ATPase; G protei 22.0 87 0.003 29.4 4.5 41 67-122 53-93 (337)
314 1in4_A RUVB, holliday junction 22.0 35 0.0012 31.5 1.8 16 93-108 61-76 (334)
315 1jr3_A DNA polymerase III subu 22.0 36 0.0012 30.7 1.8 26 69-108 38-63 (373)
316 4hv4_A UDP-N-acetylmuramate--L 21.9 65 0.0022 31.9 3.8 28 70-114 123-150 (494)
317 2wtz_A UDP-N-acetylmuramoyl-L- 21.7 65 0.0022 32.2 3.8 32 68-116 145-176 (535)
318 3tif_A Uncharacterized ABC tra 21.7 46 0.0016 29.6 2.5 76 205-307 126-205 (235)
319 1w5s_A Origin recognition comp 21.5 59 0.002 29.6 3.2 27 68-108 49-77 (412)
320 2i1q_A DNA repair and recombin 21.5 42 0.0014 30.6 2.2 27 67-107 96-122 (322)
321 2cbz_A Multidrug resistance-as 21.3 47 0.0016 29.6 2.4 24 67-104 29-52 (237)
322 3hn7_A UDP-N-acetylmuramate-L- 21.2 63 0.0021 32.3 3.6 31 69-116 122-152 (524)
323 3ch4_B Pmkase, phosphomevalona 21.2 54 0.0018 29.8 2.8 24 70-107 12-35 (202)
324 2gk4_A Conserved hypothetical 21.1 1.1E+02 0.0038 28.3 4.9 53 68-126 2-57 (232)
325 3b9p_A CG5977-PA, isoform A; A 21.1 35 0.0012 30.1 1.5 25 69-107 54-78 (297)
326 1e69_A Chromosome segregation 20.8 53 0.0018 30.2 2.8 15 93-107 34-48 (322)
327 2zu0_C Probable ATP-dependent 20.8 58 0.002 29.6 3.0 24 67-104 44-67 (267)
328 1z47_A CYSA, putative ABC-tran 20.8 51 0.0017 31.9 2.7 24 67-104 39-62 (355)
329 1c9k_A COBU, adenosylcobinamid 20.6 41 0.0014 29.8 1.9 13 93-105 9-21 (180)
330 2v9p_A Replication protein E1; 20.5 69 0.0023 30.4 3.5 27 67-107 124-150 (305)
331 1iy2_A ATP-dependent metallopr 20.5 36 0.0012 30.2 1.5 15 93-107 83-97 (278)
332 1hqc_A RUVB; extended AAA-ATPa 20.4 44 0.0015 29.6 2.0 16 93-108 48-63 (324)
333 3oit_A OS07G0271500 protein; t 20.2 14 0.00048 35.6 -1.3 55 22-77 298-368 (387)
No 1
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=100.00 E-value=1.9e-168 Score=1270.55 Aligned_cols=307 Identities=50% Similarity=0.827 Sum_probs=304.3
Q ss_pred CCCHHHHHHHcCCCCcchhcccCceeeecchhhhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 28 PLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 28 ~~pI~eiA~~lGL~~dele~YG~yKAKv~l~~l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
++||.+||+++||++||+||||+|||||+++++++++++++|||||||||||||+ |||||||||||+|||
T Consensus 2 ~~pI~~iA~~lgi~~~~le~YG~~kAKv~~~~l~~~~~~~~GklIlVTaItPTPa----------GEGKtTttiGL~~aL 71 (543)
T 3do6_A 2 MKPIKEIADQLELKDDILYPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPA----------GEGKTTTSIGLSMSL 71 (543)
T ss_dssp CCCHHHHHHHTTCCGGGEEEETTTEEEECTTHHHHTTTSCCCEEEEEEESSCCTT----------CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCHHHHHhCCCccEEecHHHhhhhhcCCCCeEEEEEecCCCCC----------CCCccchHHHHHHHH
Confidence 6899999999999999999999999999999999999899999999999999999 999999999999999
Q ss_pred hhhcCCcEEEEecCCCCCCccccccCcCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhcccccChhHhhh
Q 044054 108 GAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFN 187 (400)
Q Consensus 108 ~~~lgk~~~~~lRqPS~GP~FGiKGGAaGGGysQviPmeeiNLHfTGD~HAItaA~NLlaA~idn~i~~~~~~~~~~l~~ 187 (400)
+ |+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||+|
T Consensus 72 ~-~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQViPMediNLHfTGD~HAItaAnNLLaA~iDn~i~~gn--------- 141 (543)
T 3do6_A 72 N-RIGKKSIVTLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGN--------- 141 (543)
T ss_dssp H-HTTCCEEEEECCCCHHHHHHSCCSTTEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred H-hcCCeeEEEEecCCCCCcCCcccccCCCcceeecchhhccccccchHHHHHHHHHHHHHHHHHHHhccC---------
Confidence 5 999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcCCcchhHHHHHHHHHhcCCCCCCCCCCHHHhhhhccCCCCCCceeeecccccCcccccceeeccCCCCCCcc
Q 044054 188 RLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMV 267 (400)
Q Consensus 188 rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iG~g~~~~G~~ 267 (400)
+|||||++|+|+||||||||+||+|+||+|+++||+|
T Consensus 142 -------------------------------------------~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~ 178 (543)
T 3do6_A 142 -------------------------------------------ELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFP 178 (543)
T ss_dssp -------------------------------------------TTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCC
T ss_pred -------------------------------------------ccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCc
Confidence 7999999999999999999999999999999999999
Q ss_pred eecceeeeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeccccCcchhHHHHhhhccCCCcceeecCceeEEec
Q 044054 268 RETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHA 347 (400)
Q Consensus 268 re~gFdItvASEiMAIL~La~dl~Dlr~Rlg~ivva~~~~g~PVta~DL~~~GAmt~LLkdAikPnLvQTlEgtP~~VH~ 347 (400)
||+|||||||||||||||||+|++|||+|||||||||++||+||||+||+++||||+||||||||||||||||||+||||
T Consensus 179 re~gFdITvASEiMAILcLa~dl~DLk~Rlg~ivvay~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHg 258 (543)
T 3do6_A 179 REDSFIITAASEVMAILALSENMKDLKERLGKIIVALDADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHC 258 (543)
T ss_dssp EEECEEEGGGSHHHHHHHHCSSHHHHHHHHHTCEEEEETTSCEEEHHHHTCHHHHHHHTTTTTSCEEEEETTSCEEEECC
T ss_pred cccceeEEehhhhhhHHHhcCCHHHHHHHhcCEEEEEcCCCCeEehHhcccchhHHHHHHhhcCccceeeccCCeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhcccCchHHHHHHHHHhcCCCCeEEeecccccCcccccccccccccCC
Q 044054 348 GPFANIAHGNSSIVADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG 400 (400)
Q Consensus 348 GPFANIAhG~nSiiA~~~aLklag~~dyvVTEAGFGaDlG~EKF~nIkcr~sg 400 (400)
||||||||||||||||++||||+ ||||||||||||||||||||||||++|
T Consensus 259 GPFANIAHGcnSviAtk~ALkla---DyvVTEAGFGADlGaEKF~dIKCR~~g 308 (543)
T 3do6_A 259 GPFANIAHGTNSIIATKMAMKLS---EYTVTEAGFGADLGAEKFIDFVSRVGG 308 (543)
T ss_dssp CCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSSTTTHHHHHHHTHHHHHT
T ss_pred CccccccccchHHHHHHHHHhcc---CeEEEecccccccchHhhcCccccccC
Confidence 99999999999999999999999 999999999999999999999999986
No 2
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=100.00 E-value=5.9e-159 Score=1206.02 Aligned_cols=321 Identities=57% Similarity=0.953 Sum_probs=314.4
Q ss_pred CCCCCcHHHHccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCC
Q 044054 14 SPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLG 93 (400)
Q Consensus 14 ~pm~sDieIa~~~~~~pI~eiA~~lGL~~dele~YG~yKAKv~l~~l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~G 93 (400)
+||||||||||+++|+||.+||+++||++||+|+||+|||||++++++++++++++|+|+||+++|||+ |
T Consensus 2 ~~~~sDieIa~~~~~~pI~~ia~~~gi~~~~lE~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~----------G 71 (557)
T 3pzx_A 2 SKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPA----------G 71 (557)
T ss_dssp ----CCTTTTTTCCCCCHHHHHHHTTCCGGGEEEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTT----------C
T ss_pred CCCCCHHHHHhhCCCcCHHHHHHHcCCCHHHHHHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCC----------C
Confidence 489999999999999999999999999999999999999999999999998889999999999999999 9
Q ss_pred CccchhHHHHHHHHhhhcCCcEEEEecCCCCCCccccccCcCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhh
Q 044054 94 EGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTR 173 (400)
Q Consensus 94 EGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~FGiKGGAaGGGysQviPmeeiNLHfTGD~HAItaA~NLlaA~idn~ 173 (400)
|||||||++|+++| +++|++++++||+||+||+||+||||+|||||||+|||||||||||||||||||||||||+||||
T Consensus 72 EGKSTtsinLA~al-A~~GkkVLLiLR~Psl~~~FGikggaaggG~sqv~Pme~~nLhfTGD~hAItaAnNLlaA~iDn~ 150 (557)
T 3pzx_A 72 EGKTTTSVGLTDAL-ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNH 150 (557)
T ss_dssp CCHHHHHHHHHHHH-HHTTCCEEEEECCCCSHHHHHTCCCCEEETTEEEECHHHHHSSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHH-HHcCCeEEEEeCCCCccccCCCCCCCCCCCceeeeechhcccCccCchhhHHHhhhHHHHHHHHH
Confidence 99999999999999 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccChhHhhhhcCCCCCcCCcchhHHHHHHHHHhcCCCCCCCCCCHHHhhhhccCCCCCCceeeecccccCccccc
Q 044054 174 IFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLR 253 (400)
Q Consensus 174 i~~~~~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR 253 (400)
|||+| +|+|||++|+|+||||||||+||
T Consensus 151 i~~gn----------------------------------------------------~l~idp~~i~w~Rv~D~NdR~LR 178 (557)
T 3pzx_A 151 LQQGN----------------------------------------------------VLNIDPRTITWRRVIDLNDRALR 178 (557)
T ss_dssp HHTTC----------------------------------------------------TTCBCGGGCCCCEEESSCCGGGS
T ss_pred HhhcC----------------------------------------------------CCCccCCeeEEeeeecCChHHhh
Confidence 99998 79999999999999999999999
Q ss_pred ceeeccCCCCCCcceecceeeeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeccccCcchhHHHHhhhccCCC
Q 044054 254 KITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPT 333 (400)
Q Consensus 254 ~I~iG~g~~~~G~~re~gFdItvASEiMAIL~La~dl~Dlr~Rlg~ivva~~~~g~PVta~DL~~~GAmt~LLkdAikPn 333 (400)
+|+||+|+++||+|||+|||||||||||||||||+|++|||+|||||||||+++|+||||+||+++||||+|||||||||
T Consensus 179 ~i~~glg~~~~G~~re~gFdITvASEiMAIlcLa~dl~Dlk~Rlg~ivv~~~~~g~PVta~DL~~~GAmt~LLkDAikPN 258 (557)
T 3pzx_A 179 NIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPN 258 (557)
T ss_dssp SEEESCSSGGGCCCEEECEEEGGGCHHHHHHHHCSSHHHHHHHHHHCEEEEBTTSCEEETGGGTCHHHHHHHTTTTTSCE
T ss_pred hhhhccCCCCCCCccccceeEEehhhhhhHHHhcCCHHHHHHHhhCEEEEEcCCCCeeeHHHcccchhHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCceeEEeccccchhcccCchHHHHHHHHHhcCCCCeEEeecccccCcccccccccccccCC
Q 044054 334 LMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG 400 (400)
Q Consensus 334 LvQTlEgtP~~VH~GPFANIAhG~nSiiA~~~aLklag~~dyvVTEAGFGaDlG~EKF~nIkcr~sg 400 (400)
|||||||||+||||||||||||||||||||++||||+ ||||||||||||||||||||||||++|
T Consensus 259 LvQTlEgtPa~vHgGPFANIAHGcnSviAtk~ALkl~---dyvVTEAGFGaDlGaEKF~dIKcR~~g 322 (557)
T 3pzx_A 259 LVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFYDVKCRYAG 322 (557)
T ss_dssp EEEETTCCEEEECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSCTTTHHHHHHHTHHHHHT
T ss_pred ceeeccCCeeEEecCcccccccCchHHHHHHHHHhcc---CeEEEecccCcCcchhhhcCCcccccC
Confidence 9999999999999999999999999999999999999 999999999999999999999999986
No 3
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.97 E-value=8.7e-32 Score=213.26 Aligned_cols=70 Identities=54% Similarity=0.880 Sum_probs=67.8
Q ss_pred hhhhcccccChhHhhhhcCCCCCcCCcchhHHHHHHHHHhcCCCCCCCCCCHHHhhhhccCCCCCCceeee
Q 044054 172 TRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWR 242 (400)
Q Consensus 172 n~i~~~~~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~ 242 (400)
.+||||+||+|++||+|||| .++|+|+||++|++||+||||+|+||++|||||+++|+||||||++|+|+
T Consensus 2 ~~mfHE~TQsD~aLy~RLVP-~~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRLdIDP~TITw~ 71 (71)
T 2eo2_A 2 SSGSSGSTQTDKALYNRLVP-LVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQ 71 (71)
T ss_dssp CCCSCCSSCSHHHHHHHHSC-CSSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHTCCCSTTCCCC
T ss_pred CccccccccchHHHHHhhCC-CCCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhceecccCccceeeC
Confidence 37999999999999999999 67799999999999999999999999999999999999999999999996
No 4
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.27 E-value=0.00015 Score=67.52 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=44.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE---EecCCCCCCcccccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPLQGPTFGIRG 132 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~---~lRqPS~GP~FGiKG 132 (400)
...|.|+||+..| ||||||+|..|+.+| +..|+++.+ .+|+|++.-.||+..
T Consensus 102 ~~~kvI~vts~kg-------------G~GKTtva~nLA~~l-A~~G~rVLLID~D~r~~~l~~~~~~~~ 156 (299)
T 3cio_A 102 TENNILMITGATP-------------DSGKTFVSSTLAAVI-AQSDQKVLFIDADLRRGYSHNLFTVSN 156 (299)
T ss_dssp CSCCEEEEEESSS-------------SSCHHHHHHHHHHHH-HHTTCCEEEEECCTTTCCHHHHTTCCC
T ss_pred CCCeEEEEECCCC-------------CCChHHHHHHHHHHH-HhCCCcEEEEECCCCCccHHHHcCCCC
Confidence 4579999998654 899999999999999 588999877 379999988898764
No 5
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.21 E-value=0.00021 Score=65.65 Aligned_cols=52 Identities=27% Similarity=0.303 Sum_probs=44.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE---EecCCCCCCcccccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPLQGPTFGIRG 132 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~---~lRqPS~GP~FGiKG 132 (400)
++.|.|+||+-.| ||||||++..|+.+| ++.|+++.+ .+|.|++.-.||++.
T Consensus 80 ~~~kvI~vts~kg-------------G~GKTt~a~nLA~~l-A~~G~rVLLID~D~~~~~l~~~~~~~~ 134 (271)
T 3bfv_A 80 SAVQSIVITSEAP-------------GAGKSTIAANLAVAY-AQAGYKTLIVDGDMRKPTQHYIFNLPN 134 (271)
T ss_dssp CCCCEEEEECSST-------------TSSHHHHHHHHHHHH-HHTTCCEEEEECCSSSCCHHHHTTCCC
T ss_pred CCCeEEEEECCCC-------------CCcHHHHHHHHHHHH-HhCCCeEEEEeCCCCCccHHHHcCCCC
Confidence 4578999998644 899999999999999 589999887 489999988898864
No 6
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.02 E-value=0.00029 Score=65.59 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=44.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE---EecCCCCCCcccccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPLQGPTFGIRG 132 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~---~lRqPS~GP~FGiKG 132 (400)
.+.|.|+||+-.| ||||||+|..|+.+| +..|+++.+ .+|.|++.-.||++.
T Consensus 90 ~~~kvI~vts~kg-------------G~GKTtva~nLA~~l-A~~G~rVLLID~D~~~~~l~~~~~~~~ 144 (286)
T 3la6_A 90 AQNNVLMMTGVSP-------------SIGMTFVCANLAAVI-SQTNKRVLLIDCDMRKGYTHELLGTNN 144 (286)
T ss_dssp TTCCEEEEEESSS-------------SSSHHHHHHHHHHHH-HTTTCCEEEEECCTTTCCHHHHHTCCC
T ss_pred CCCeEEEEECCCC-------------CCcHHHHHHHHHHHH-HhCCCCEEEEeccCCCCCHHHHhCCCC
Confidence 4579999998755 899999999999999 588999876 589999998898753
No 7
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.50 E-value=0.0012 Score=56.89 Aligned_cols=50 Identities=26% Similarity=0.265 Sum_probs=38.8
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE---EecCCCCCCcccccc
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPLQGPTFGIRG 132 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~---~lRqPS~GP~FGiKG 132 (400)
+|.|.|++. .- |+||||+|..|+.+| ++.|+++.+ ..++|++.-.||+..
T Consensus 2 ~~~i~v~s~---kg----------GvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~l~~~~~~~~ 54 (237)
T 1g3q_A 2 GRIISIVSG---KG----------GTGKTTVTANLSVAL-GDRGRKVLAVDGDLTMANLSLVLGVDD 54 (237)
T ss_dssp CEEEEEECS---ST----------TSSHHHHHHHHHHHH-HHTTCCEEEEECCTTSCCHHHHTTCCC
T ss_pred ceEEEEecC---CC----------CCCHHHHHHHHHHHH-HhcCCeEEEEeCCCCCCChhHhcCCCC
Confidence 467777763 44 999999999999999 578998876 246777777788764
No 8
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.48 E-value=0.0013 Score=57.23 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=39.8
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE---EecCCCCCCcccccc
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPLQGPTFGIRG 132 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~---~lRqPS~GP~FGiKG 132 (400)
+|.|.|++. .- |+||||+|..|+.+| ++.|+++.+ ..++|++.-.||+..
T Consensus 2 ~~vi~v~s~---kg----------GvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~~~~~lg~~~ 54 (260)
T 3q9l_A 2 ARIIVVTSG---KG----------GVGKTTSSAAIATGL-AQKGKKTVVIDFAIGLRNLDLIMGCER 54 (260)
T ss_dssp CEEEEEECS---ST----------TSSHHHHHHHHHHHH-HHTTCCEEEEECCCSSCCHHHHTTCGG
T ss_pred CeEEEEECC---CC----------CCcHHHHHHHHHHHH-HhCCCcEEEEECCCCCCChhHHhCCCC
Confidence 567777764 34 999999999999999 578999876 457788777787764
No 9
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.44 E-value=0.0015 Score=61.01 Aligned_cols=52 Identities=17% Similarity=-0.019 Sum_probs=41.4
Q ss_pred CCCC-cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE---EecCCCCCCcccccc
Q 044054 66 SADG-YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPLQGPTFGIRG 132 (400)
Q Consensus 66 ~~~G-k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~---~lRqPS~GP~FGiKG 132 (400)
..+| |.|+|++- .- |+||||+|..|+.+| ++.|+++.+ .. +||+.-.||.+.
T Consensus 9 ~~~gm~~i~v~sg---KG----------GvGKTTvA~~LA~~l-A~~G~rVLlvD~D~-~~~l~~~l~~~~ 64 (324)
T 3zq6_A 9 FNKGKTTFVFIGG---KG----------GVGKTTISAATALWM-ARSGKKTLVISTDP-AHSLSDSLEREI 64 (324)
T ss_dssp CBTTBCEEEEEEE---ST----------TSSHHHHHHHHHHHH-HHTTCCEEEEECCS-SCCHHHHHTSCC
T ss_pred CCCCCeEEEEEeC---CC----------CchHHHHHHHHHHHH-HHCCCcEEEEeCCC-CcCHHHHhCCcC
Confidence 3568 77777764 33 999999999999999 578999877 34 678888899875
No 10
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.36 E-value=0.0025 Score=54.49 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=22.1
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEE
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
|+||||+|..|+.+| ++.|+++..
T Consensus 12 GvGKTt~a~nLa~~l-a~~G~rVll 35 (224)
T 1byi_A 12 EVGKTVASCALLQAA-KAAGYRTAG 35 (224)
T ss_dssp TSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCCHHHHHHHHHHHH-HHCCCCEEE
Confidence 999999999999999 588999875
No 11
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.32 E-value=0.0017 Score=57.09 Aligned_cols=51 Identities=27% Similarity=0.233 Sum_probs=39.9
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE---ecCCCCCCccccccC
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPLQGPTFGIRGG 133 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~---lRqPS~GP~FGiKGG 133 (400)
+|.|.|++- .- |+||||++..|+.+| ++.|+++.+. .++|++.-.||++..
T Consensus 2 ~~~I~v~s~---kg----------GvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~l~~~l~~~~~ 55 (263)
T 1hyq_A 2 VRTITVASG---KG----------GTGKTTITANLGVAL-AQLGHDVTIVDADITMANLELILGMEGL 55 (263)
T ss_dssp CEEEEEEES---SS----------CSCHHHHHHHHHHHH-HHTTCCEEEEECCCSSSSHHHHTTCCCC
T ss_pred CeEEEEECC---CC----------CCCHHHHHHHHHHHH-HhCCCcEEEEECCCCCCCcchhcCCCCC
Confidence 467777763 44 999999999999999 5789988763 577888888888653
No 12
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.12 E-value=0.0042 Score=56.37 Aligned_cols=42 Identities=31% Similarity=0.305 Sum_probs=32.5
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP 122 (400)
.+.+|.|.|++ .- |+||||+|..|+.+| ++.|+++.+.=-.|
T Consensus 38 ~~~~~vI~v~~----KG----------GvGKTT~a~nLA~~L-a~~G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYG----KG----------GIGKSTTSSNLSAAF-SILGKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEEC----ST----------TSSHHHHHHHHHHHH-HHTTCCEEEEEESS
T ss_pred cCCceEEEEEC----CC----------CccHHHHHHHHHHHH-HHCCCeEEEEeCCC
Confidence 35688998882 44 999999999999999 57899987753344
No 13
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.03 E-value=0.0059 Score=52.61 Aligned_cols=49 Identities=16% Similarity=0.027 Sum_probs=37.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhc-CCcEEEE---ecCCCCCCccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFL-DKKVVTC---LRQPLQGPTFG 129 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~l-gk~~~~~---lRqPS~GP~FG 129 (400)
..+|.|.|++-. - |+||||+|..|+.+| ++. |+++.+. .+.|++.-.||
T Consensus 2 ~~~~vI~v~s~k---G----------GvGKTt~a~~LA~~l-a~~~g~~VlliD~D~~~~~l~~~~~ 54 (245)
T 3ea0_A 2 NAKRVFGFVSAK---G----------GDGGSCIAANFAFAL-SQEPDIHVLAVDISLPFGDLDMYLS 54 (245)
T ss_dssp -CCEEEEEEESS---T----------TSSHHHHHHHHHHHH-TTSTTCCEEEEECCTTTCCGGGGTC
T ss_pred CCCeEEEEECCC---C----------CcchHHHHHHHHHHH-HhCcCCCEEEEECCCCCCCHHHHhC
Confidence 357889988753 3 999999999999999 577 9998763 34466666663
No 14
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.61 E-value=0.0093 Score=52.78 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=30.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
..+|.|.|++-. - |+||||+|..|+.+| + .|+++.+.
T Consensus 25 ~~~~vI~v~s~k---G----------GvGKTT~a~~LA~~l-a-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIASIK---G----------GVGKSTSAIILATLL-S-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECCSS---S----------SSCHHHHHHHHHHHH-T-TTSCEEEE
T ss_pred CCCeEEEEEeCC---C----------CchHHHHHHHHHHHH-H-CCCCEEEE
Confidence 458899988753 3 999999999999999 5 79887663
No 15
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.58 E-value=0.012 Score=52.43 Aligned_cols=52 Identities=31% Similarity=0.162 Sum_probs=39.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPLQGPTFGIRG 132 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~---lRqPS~GP~FGiKG 132 (400)
..+|.|.|++- .- |+||||+|..|+.+| ++.|+++.+. .+.|++.-.||+..
T Consensus 16 ~~~~vI~v~s~---kG----------GvGKTT~a~nLA~~l-a~~G~~VlliD~D~~~~~l~~~l~~~~ 70 (262)
T 2ph1_A 16 KIKSRIAVMSG---KG----------GVGKSTVTALLAVHY-ARQGKKVGILDADFLGPSIPILFGLRN 70 (262)
T ss_dssp TCSCEEEEECS---SS----------CTTHHHHHHHHHHHH-HHTTCCEEEEECCSSCCHHHHHTTCCS
T ss_pred cCCeEEEEEcC---CC----------CCCHHHHHHHHHHHH-HHCCCeEEEEeCCCCCCCHHHHhcCCC
Confidence 35788988874 34 999999999999999 5789998763 45566555677764
No 16
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.53 E-value=0.013 Score=49.42 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=37.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFG 129 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~FG 129 (400)
.+|++|+++|. - |.||||++.-|++.|+ ..+..+ ..+|+|..|..+|
T Consensus 8 ~~~~~I~l~G~----~----------GsGKST~~~~L~~~l~-~~~~~~-~~~~~~~~~~~~g 54 (212)
T 2wwf_A 8 KKGKFIVFEGL----D----------RSGKSTQSKLLVEYLK-NNNVEV-KHLYFPNRETGIG 54 (212)
T ss_dssp BCSCEEEEEES----T----------TSSHHHHHHHHHHHHH-HTTCCE-EEEESSCTTSHHH
T ss_pred hcCCEEEEEcC----C----------CCCHHHHHHHHHHHHH-HcCCcE-EEEecCCCCCcHH
Confidence 35899999997 3 8999999999999995 567777 5789997655443
No 17
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.47 E-value=0.0094 Score=52.86 Aligned_cols=51 Identities=29% Similarity=0.351 Sum_probs=36.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC--CCCCccccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP--LQGPTFGIR 131 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP--S~GP~FGiK 131 (400)
+++|.|.|++- .- |+||||+|..|+.+| ++.|+++.+.==.| ++.-.||+.
T Consensus 4 ~~~~vI~v~s~---kG----------GvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~~~~l~~~ 56 (257)
T 1wcv_1 4 AKVRRIALANQ---KG----------GVGKTTTAINLAAYL-ARLGKRVLLVDLDPQGNATSGLGVR 56 (257)
T ss_dssp -CCCEEEECCS---SC----------CHHHHHHHHHHHHHH-HHTTCCEEEEECCTTCHHHHHTTCC
T ss_pred CCCEEEEEEeC---CC----------CchHHHHHHHHHHHH-HHCCCCEEEEECCCCcCHHHHhCCC
Confidence 45788988863 34 999999999999999 57899987643334 222236654
No 18
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.41 E-value=0.012 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.2
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
|+||||++..|+.+| ++.|+++.+.
T Consensus 12 G~GKTt~a~~la~~l-a~~g~~vlli 36 (206)
T 4dzz_A 12 GSGKTTAVINIATAL-SRSGYNIAVV 36 (206)
T ss_dssp TSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CccHHHHHHHHHHHH-HHCCCeEEEE
Confidence 999999999999999 5789987664
No 19
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.31 E-value=0.0058 Score=58.47 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=33.9
Q ss_pred CCccchhHHHHHHHHhh--hcCCcEEE---EecCCCCCCccccccC
Q 044054 93 GEGKSTTTVGLCQALGA--FLDKKVVT---CLRQPLQGPTFGIRGG 133 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~--~lgk~~~~---~lRqPS~GP~FGiKGG 133 (400)
|+||||+|..|+.+| + +.|+++.+ .+| ||+.-.||++.+
T Consensus 28 GvGKTTvaanLA~~l-A~~~~G~rVLLvD~D~~-~~l~~~lg~~~~ 71 (354)
T 2woj_A 28 GVGKTTSSCSIAIQM-ALSQPNKQFLLISTDPA-HNLSDAFGEKFG 71 (354)
T ss_dssp TSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSS-CCHHHHHTSCCC
T ss_pred CCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCC-CCHHHHhCCCCC
Confidence 999999999999999 6 78999887 364 888888999864
No 20
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.19 E-value=0.016 Score=52.11 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=35.7
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCC
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQ 124 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~ 124 (400)
+|++|++.|+ - |.||||.+.-|++.|. ..|.+.+...|+|.-
T Consensus 2 ~g~~i~~eG~----~----------gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~~ 43 (213)
T 4tmk_A 2 RSKYIVIEGL----E----------GAGKTTARNVVVETLE-QLGIRDMVFTREPGG 43 (213)
T ss_dssp CCCEEEEEEC----T----------TSCHHHHHHHHHHHHH-HTTCCCEEEEESSCS
T ss_pred CCeEEEEECC----C----------CCCHHHHHHHHHHHHH-HcCCCcceeeeCCCC
Confidence 4899999997 3 9999999999999994 678756688999963
No 21
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.14 E-value=0.0058 Score=57.46 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEE---ecCCCCCCccccccC
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTC---LRQPLQGPTFGIRGG 133 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~---lRqPS~GP~FGiKGG 133 (400)
|+||||+|..|+.+| ++.|+++.+. .| ||+.-.||++.+
T Consensus 29 GvGKTTva~~LA~~l-A~~G~rVllvD~D~~-~~l~~~l~~~~~ 70 (329)
T 2woo_A 29 GVGKTTTSCSLAIQM-SKVRSSVLLISTDPA-HNLSDAFGTKFG 70 (329)
T ss_dssp SSSHHHHHHHHHHHH-HTSSSCEEEEECCTT-CHHHHHHSSCCC
T ss_pred CCcHHHHHHHHHHHH-HHCCCeEEEEECCCC-cCHHHHhCCcCC
Confidence 999999999999999 5889998763 45 888888998753
No 22
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.09 E-value=0.013 Score=55.69 Aligned_cols=52 Identities=23% Similarity=0.137 Sum_probs=40.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE--ecCCCCCCcccccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC--LRQPLQGPTFGIRG 132 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~--lRqPS~GP~FGiKG 132 (400)
.++|.|.|++-. - |+||||+|..|+.+| ++.|+++.+. =++|++.-.||...
T Consensus 141 ~~~kvIav~s~K---G----------GvGKTT~a~nLA~~L-a~~g~rVlliD~D~~~~l~~~lg~~~ 194 (373)
T 3fkq_A 141 DKSSVVIFTSPC---G----------GVGTSTVAAACAIAH-ANMGKKVFYLNIEQCGTTDVFFQAEG 194 (373)
T ss_dssp TSCEEEEEECSS---T----------TSSHHHHHHHHHHHH-HHHTCCEEEEECCTTCCHHHHCCCSC
T ss_pred CCceEEEEECCC---C----------CChHHHHHHHHHHHH-HhCCCCEEEEECCCCCCHHHHcCCCC
Confidence 568999998742 3 999999999999999 5789998762 16777777777654
No 23
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.99 E-value=0.025 Score=47.51 Aligned_cols=43 Identities=28% Similarity=0.331 Sum_probs=35.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQG 125 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~G 125 (400)
++|++|+++|. - |.||||++.-|++.|+ ..+..+ ..+|+|.-|
T Consensus 7 ~~~~~I~l~G~----~----------GsGKsT~~~~L~~~l~-~~~~~v-~~~~~~~~~ 49 (215)
T 1nn5_A 7 RRGALIVLEGV----D----------RAGKSTQSRKLVEALC-AAGHRA-ELLRFPERS 49 (215)
T ss_dssp CCCCEEEEEES----T----------TSSHHHHHHHHHHHHH-HTTCCE-EEEESSCTT
T ss_pred cCCcEEEEECC----C----------CCCHHHHHHHHHHHHH-HcCCcE-EEeeCCCCC
Confidence 35889999996 4 8999999999999995 567776 678998643
No 24
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=94.94 E-value=0.018 Score=51.90 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=30.2
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP 122 (400)
|-|+||+.. - |+||||+|.||+++| ++.|+++.. +.|
T Consensus 5 k~i~Itgt~---t----------~vGKT~vt~~L~~~l-~~~G~~V~~--~KP 41 (228)
T 3of5_A 5 KKFFIIGTD---T----------EVGKTYISTKLIEVC-EHQNIKSLC--LKP 41 (228)
T ss_dssp EEEEEEESS---S----------SSCHHHHHHHHHHHH-HHTTCCEEE--ECS
T ss_pred cEEEEEeCC---C----------CCCHHHHHHHHHHHH-HHCCCeeEE--ecc
Confidence 568888854 4 899999999999999 588998764 555
No 25
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.85 E-value=0.021 Score=52.26 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=37.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGP 126 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP 126 (400)
.+|++|++.|+ - |.||||.+.-|++.|. ..|.+.+..+|+|+-.|
T Consensus 25 ~~~~~i~~eG~----~----------GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~ 69 (236)
T 3lv8_A 25 MNAKFIVIEGL----E----------GAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTL 69 (236)
T ss_dssp -CCCEEEEEES----T----------TSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSH
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCH
Confidence 35999999997 3 9999999999999995 67888678899997333
No 26
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.78 E-value=0.012 Score=56.82 Aligned_cols=52 Identities=21% Similarity=0.200 Sum_probs=42.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhh--hcCCcEEE--EecCCCCCCccccccC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGA--FLDKKVVT--CLRQPLQGPTFGIRGG 133 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~--~lgk~~~~--~lRqPS~GP~FGiKGG 133 (400)
+.-|++++++ .- |+||||+|..|+.+| + +.|+++.+ +=++||+.-.||++-+
T Consensus 16 ~~~~i~~~~g----kG----------GvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~~~l~~~~~~~~~ 71 (348)
T 3io3_A 16 DSLKWIFVGG----KG----------GVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPAHNLSDAFCQKFG 71 (348)
T ss_dssp TTCSEEEEEC----ST----------TSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSSCHHHHHHTSCCC
T ss_pred CCcEEEEEeC----CC----------CCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCCCChHHHhccccC
Confidence 4458888887 34 999999999999999 6 78999876 3378888889998754
No 27
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.75 E-value=0.0054 Score=52.31 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEE---EecCCCCCCccccccC
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVT---CLRQPLQGPTFGIRGG 133 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~---~lRqPS~GP~FGiKGG 133 (400)
|+||||+|..|+.+| ++.|+++.+ .. ||++.-.||+...
T Consensus 10 GvGKTt~a~~LA~~l-a~~g~~VlliD~D~-~~~l~~~lg~~~~ 51 (254)
T 3kjh_A 10 GVGKTTVAAGLIKIM-ASDYDKIYAVDGDP-DSCLGQTLGLSIE 51 (254)
T ss_dssp SHHHHHHHHHHHHHH-TTTCSCEEEEEECT-TSCHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHH-HHCCCeEEEEeCCC-CcChHHHhCCCcc
Confidence 999999999999999 588999876 34 4777777877543
No 28
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.68 E-value=0.022 Score=51.10 Aligned_cols=39 Identities=21% Similarity=0.078 Sum_probs=31.3
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
++|.|.|+..++- - |+||||+|+.|+.+| ++.|+++.+.
T Consensus 33 ~~~~i~v~~~s~K-G----------GvGKTT~a~nLA~~l-a~~G~rVlli 71 (298)
T 2oze_A 33 KNEAIVILNNYFK-G----------GVGKSKLSTMFAYLT-DKLNLKVLMI 71 (298)
T ss_dssp HCSCEEEEECCSS-S----------SSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCcEEEEEeccCC-C----------CchHHHHHHHHHHHH-HhCCCeEEEE
Confidence 4788888875332 3 899999999999999 5889998763
No 29
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.56 E-value=0.027 Score=53.52 Aligned_cols=53 Identities=25% Similarity=0.080 Sum_probs=40.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEec--CCCCCCccccccC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPLQGPTFGIRGG 133 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lR--qPS~GP~FGiKGG 133 (400)
..+|.|+|++- .- |+||||+|..|+.+| ++.|+++.+.== +||+.-.||.+-+
T Consensus 23 ~~~~~i~v~sg---KG----------GvGKTTvA~~LA~~l-A~~G~rVLlvD~D~~~~l~~~l~~~~~ 77 (349)
T 3ug7_A 23 KDGTKYIMFGG---KG----------GVGKTTMSAATGVYL-AEKGLKVVIVSTDPAHSLRDIFEQEFG 77 (349)
T ss_dssp SCSCEEEEEEC---SS----------STTHHHHHHHHHHHH-HHSSCCEEEEECCTTCHHHHHHCSCCC
T ss_pred cCCCEEEEEeC---CC----------CccHHHHHHHHHHHH-HHCCCeEEEEeCCCCCCHHHHhCCCCC
Confidence 45677777764 33 999999999999999 578999887421 5777778988753
No 30
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.56 E-value=0.023 Score=51.84 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=38.5
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhh-cCCcEEEEecCCCCCC
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAF-LDKKVVTCLRQPLQGP 126 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~-lgk~~~~~lRqPS~GP 126 (400)
..+|++|++.|+ - |.||||.+.-|++.|. . .|.+++...|+|.-.|
T Consensus 18 ~~~~~~i~~~G~----~----------g~GKst~~~~l~~~l~-~~~g~~v~~~treP~~t~ 64 (223)
T 3ld9_A 18 GPGSMFITFEGI----D----------GSGKTTQSHLLAEYLS-EIYGVNNVVLTREPGGTL 64 (223)
T ss_dssp -CCCEEEEEECS----T----------TSSHHHHHHHHHHHHH-HHHCGGGEEEEESSCSSH
T ss_pred CCCCeEEEEECC----C----------CCCHHHHHHHHHHHHh-hccCceeeEeeeCCCCCh
Confidence 357999999997 3 9999999999999995 5 7988887689998443
No 31
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=94.41 E-value=0.036 Score=51.04 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=31.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
+..|.|+||+. -- |.|||++|.||+++| ++.|.++..
T Consensus 19 ~m~k~i~ItgT---~t----------~vGKT~vs~gL~~~L-~~~G~~V~~ 55 (242)
T 3qxc_A 19 FQGHMLFISAT---NT----------NAGKTTCARLLAQYC-NACGVKTIL 55 (242)
T ss_dssp CCCEEEEEEES---ST----------TSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred hcCcEEEEEeC---CC----------CCcHHHHHHHHHHHH-HhCCCceEE
Confidence 45789999985 44 899999999999999 578988664
No 32
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=94.31 E-value=0.032 Score=50.61 Aligned_cols=49 Identities=39% Similarity=0.388 Sum_probs=37.3
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE---EecCCCCCCccccc
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPLQGPTFGIR 131 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~---~lRqPS~GP~FGiK 131 (400)
.|.|.|++. .- |+||||+|..|+.+| ++.|+++.+ ..+||++.-.||.+
T Consensus 4 ~kvI~v~s~---KG----------GvGKTT~a~nLA~~L-a~~G~~VlliD~D~~q~~l~~~l~~~ 55 (286)
T 2xj4_A 4 TRVIVVGNE---KG----------GAGKSTIAVHLVTAL-LYGGAKVAVIDLDLRQRTSARFFENR 55 (286)
T ss_dssp CEEEEECCS---SS----------CTTHHHHHHHHHHHH-HHTTCCEEEEECCTTTCHHHHHHHHH
T ss_pred CeEEEEEcC---CC----------CCCHHHHHHHHHHHH-HHCCCcEEEEECCCCCCCHHHHhCCC
Confidence 466777653 44 999999999999999 578999875 35677776667654
No 33
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.29 E-value=0.015 Score=55.63 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=33.7
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEE--EecCCCCCCcccccc
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVT--CLRQPLQGPTFGIRG 132 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~--~lRqPS~GP~FGiKG 132 (400)
|+||||+|..|+.+| +..|+++.+ |=++||+.-.||.+-
T Consensus 26 GvGKTt~a~~lA~~l-a~~g~~vllid~D~~~~l~~~l~~~~ 66 (334)
T 3iqw_A 26 GVGKTTTSCSLAIQL-AKVRRSVLLLSTDPAHNLSDAFSQKF 66 (334)
T ss_dssp TSSHHHHHHHHHHHH-TTSSSCEEEEECCSSCHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHH-HhCCCcEEEEECCCCCChhHHhcccc
Confidence 999999999999999 688999866 447888888998764
No 34
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.21 E-value=0.04 Score=49.28 Aligned_cols=41 Identities=29% Similarity=0.289 Sum_probs=35.1
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCC
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQ 124 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~ 124 (400)
+|++|++.|+ - |.||||.+.-|++.|. ..|.++ ...|+|.-
T Consensus 5 ~g~~i~~eG~----~----------gsGKsT~~~~l~~~l~-~~~~~v-~~~~~p~~ 45 (213)
T 4edh_A 5 TGLFVTLEGP----E----------GAGKSTNRDYLAERLR-ERGIEV-QLTREPGG 45 (213)
T ss_dssp CCEEEEEECS----T----------TSSHHHHHHHHHHHHH-TTTCCE-EEEESSCS
T ss_pred CceEEEEEcC----C----------CCCHHHHHHHHHHHHH-HcCCCc-ccccCCCC
Confidence 5899999997 3 9999999999999995 678876 57899963
No 35
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.18 E-value=0.047 Score=51.70 Aligned_cols=48 Identities=35% Similarity=0.490 Sum_probs=37.3
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCcccc
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGI 130 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~FGi 130 (400)
..|+|-|+ |.| |.||||||+=|+-|| ++.|+++.+.==.|....++++
T Consensus 47 ~aKVIAIa-------GKG-------GVGKTTtavNLA~aL-A~~GkkVllID~Dpq~~s~~~l 94 (314)
T 3fwy_A 47 GAKVFAVY-------GKG-------GIGKSTTSSNLSAAF-SILGKRVLQIGCDPKHDSTFTL 94 (314)
T ss_dssp CCEEEEEE-------CST-------TSSHHHHHHHHHHHH-HHTTCCEEEEEESSSCCTTHHH
T ss_pred CceEEEEE-------CCC-------ccCHHHHHHHHHHHH-HHCCCeEEEEecCCCCcccccc
Confidence 46888886 444 999999999999999 6999999876556654444544
No 36
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.94 E-value=0.028 Score=56.32 Aligned_cols=50 Identities=22% Similarity=0.157 Sum_probs=40.7
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE---EecCCCCCCccccccC
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPLQGPTFGIRGG 133 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~---~lRqPS~GP~FGiKGG 133 (400)
..+++++++- - |+||||+|..|+.+| ++.|+++.+ .. +||++-.||++-+
T Consensus 7 ~~~i~~~sgk----G----------GvGKTT~a~~lA~~l-A~~G~rVLlvd~D~-~~~l~~~l~~~~~ 59 (589)
T 1ihu_A 7 IPPYLFFTGK----G----------GVGKTSISCATAIRL-AEQGKRVLLVSTDP-ASNVGQVFSQTIG 59 (589)
T ss_dssp CCSEEEEECS----T----------TSSHHHHHHHHHHHH-HHTTCCEEEEECCT-TCCHHHHTTSCCC
T ss_pred CCEEEEEeCC----C----------cCHHHHHHHHHHHHH-HHCCCcEEEEECCC-CcCHHHHhCCccc
Confidence 4678887764 4 999999999999999 578999876 35 5898889998754
No 37
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.93 E-value=0.047 Score=49.73 Aligned_cols=44 Identities=27% Similarity=0.375 Sum_probs=33.4
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhc----CCcEEEEecCCCCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFL----DKKVVTCLRQPLQGP 126 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~l----gk~~~~~lRqPS~GP 126 (400)
.+|++|++.|+ - |.||||.+.-|++.|. .. |.++ ..+|+|.-.|
T Consensus 23 ~~g~~I~~eG~----~----------GsGKsT~~~~l~~~l~-~~~~~~g~~v-~~~rep~~t~ 70 (227)
T 3v9p_A 23 ARGKFITFEGI----D----------GAGKTTHLQWFCDRLQ-ERLGPAGRHV-VVTREPGGTR 70 (227)
T ss_dssp CCCCEEEEECC----C-------------CHHHHHHHHHHHH-HHHGGGTCCE-EEEESSSSSH
T ss_pred cCCeEEEEECC----C----------CCCHHHHHHHHHHHHH-hhccccceee-eeecCCCCCh
Confidence 36999999997 4 9999999999999995 45 8776 5789996444
No 38
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=93.91 E-value=0.01 Score=58.06 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=34.6
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEE--EecCCCCCCccccccC
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVT--CLRQPLQGPTFGIRGG 133 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~--~lRqPS~GP~FGiKGG 133 (400)
|+||||+|..|+.+| +..|+++.+ | +|||+.-.||++-+
T Consensus 12 G~GKTt~a~~la~~l-a~~g~~vllvd~-~~~~l~~~~~~~~~ 52 (374)
T 3igf_A 12 GVARTKIAIAAAKLL-ASQGKRVLLAGL-AEPVLPLLLEQTLT 52 (374)
T ss_dssp HHHHHHHHHHHHHHH-HHTTCCEEEEEC-SCSHHHHHHTSCCC
T ss_pred CCcHHHHHHHHHHHH-HHCCCCeEEEeC-CCCChHHhhCCCCC
Confidence 999999999999999 588999855 6 99999999999843
No 39
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=93.81 E-value=0.062 Score=50.97 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=35.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhh-----hcCCcEEEEecCC--CCCCccccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGA-----FLDKKVVTCLRQP--LQGPTFGIR 131 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~-----~lgk~~~~~lRqP--S~GP~FGiK 131 (400)
..+|.|.|++-- = |+||||+|+-|+.+|.. +.|+++.+.==.| ++.-.||..
T Consensus 106 ~~~~vIav~s~K---G----------GvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~ 164 (398)
T 3ez2_A 106 SEAYVIFISNLK---G----------GVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHK 164 (398)
T ss_dssp CSCEEEEECCSS---S----------SSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCH
T ss_pred CCCeEEEEEeCC---C----------CccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCc
Confidence 357888888753 2 99999999999999942 4699987633333 333335544
No 40
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=93.58 E-value=0.05 Score=51.83 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=29.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhh-----hcCCcEEEEec--CCCCCCccccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGA-----FLDKKVVTCLR--QPLQGPTFGIR 131 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~-----~lgk~~~~~lR--qPS~GP~FGiK 131 (400)
..+|.|.|++-.+ |+||||+|.-|+.+|.. +.|+++.+.== |.++.-.||+.
T Consensus 109 ~~~~vIav~s~KG-------------GvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~ 167 (403)
T 3ez9_A 109 KSPYVIFVVNLKG-------------GVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHT 167 (403)
T ss_dssp CSCEEEEECCC---------------------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC---
T ss_pred CCceEEEEEcCCC-------------CchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCC
Confidence 4688898887532 99999999999999942 57999876322 34555556654
No 41
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=93.54 E-value=0.062 Score=49.72 Aligned_cols=43 Identities=19% Similarity=0.079 Sum_probs=30.7
Q ss_pred hhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 60 LDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 60 l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
|.++.. .+=|-|+||+. -. |+||||+|.||+++| ++.|.++..
T Consensus 18 ~~~~~~-~~m~~i~Itgt---~t----------~vGKT~vt~gL~~~l-~~~G~~V~~ 60 (251)
T 3fgn_A 18 ENLYFQ-SHMTILVVTGT---GT----------GVGKTVVCAALASAA-RQAGIDVAV 60 (251)
T ss_dssp ----CC-SSCEEEEEEES---ST----------TSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred HHHhcc-cCCCEEEEEeC---CC----------CCcHHHHHHHHHHHH-HHCCCeEEE
Confidence 444443 33467888885 45 899999999999999 578988764
No 42
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.48 E-value=0.059 Score=46.90 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.3
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEE
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
|+||||+|+.|+.+| ++.| ++.+
T Consensus 11 GvGKTT~a~~LA~~l-a~~g-~Vll 33 (209)
T 3cwq_A 11 GVGKTTTAVHLSAYL-ALQG-ETLL 33 (209)
T ss_dssp TSSHHHHHHHHHHHH-HTTS-CEEE
T ss_pred CCcHHHHHHHHHHHH-HhcC-CEEE
Confidence 999999999999999 5779 7655
No 43
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.40 E-value=0.038 Score=48.61 Aligned_cols=25 Identities=40% Similarity=0.512 Sum_probs=22.4
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
|+||||+|+.|+.+| ++.|+++.+.
T Consensus 11 GvGKTT~a~nLA~~l-a~~G~~Vlli 35 (269)
T 1cp2_A 11 GIGKSTTTQNLTSGL-HAMGKTIMVV 35 (269)
T ss_dssp TSSHHHHHHHHHHHH-HTTTCCEEEE
T ss_pred CCcHHHHHHHHHHHH-HHCCCcEEEE
Confidence 999999999999999 5789998763
No 44
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=93.08 E-value=0.041 Score=52.26 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.8
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
|+||||+|+-|+.+| ++.|+++.+.
T Consensus 12 GvGKTT~a~nLA~~L-A~~G~rVLlI 36 (361)
T 3pg5_A 12 GVGKTTLSTNVAHYF-ALQGKRVLYV 36 (361)
T ss_dssp CHHHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCcHHHHHHHHHHHH-HhCCCcEEEE
Confidence 999999999999999 5889998774
No 45
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.05 E-value=0.093 Score=43.72 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=30.9
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP 122 (400)
+|++|+++|. - |.||||++.-|++.|+ ..| + +...++|
T Consensus 3 ~~~~I~i~G~----~----------GsGKsT~~~~L~~~l~-~~g-~-~~~~~~~ 40 (213)
T 2plr_A 3 KGVLIAFEGI----D----------GSGKSSQATLLKDWIE-LKR-D-VYLTEWN 40 (213)
T ss_dssp CCEEEEEECC----T----------TSSHHHHHHHHHHHHT-TTS-C-EEEEETT
T ss_pred CCeEEEEEcC----C----------CCCHHHHHHHHHHHHh-hcC-C-EEEecCC
Confidence 3789999986 3 8999999999999995 556 3 4667888
No 46
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.04 E-value=0.045 Score=49.20 Aligned_cols=24 Identities=58% Similarity=0.621 Sum_probs=22.1
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEE
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
|+||||+|+.|+.+| ++.|+++.+
T Consensus 12 GvGKTT~a~nLA~~L-a~~G~rVll 35 (289)
T 2afh_E 12 GIGKSTTTQNLVAAL-AEMGKKVMI 35 (289)
T ss_dssp TSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred cCcHHHHHHHHHHHH-HHCCCeEEE
Confidence 999999999999999 578999875
No 47
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.70 E-value=0.1 Score=43.19 Aligned_cols=39 Identities=36% Similarity=0.321 Sum_probs=29.7
Q ss_pred EEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCC
Q 044054 71 YVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQG 125 (400)
Q Consensus 71 ~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~G 125 (400)
+|++||. - |.||||++.-|++.|. ..|..+ ...|+|.-.
T Consensus 2 ~I~l~G~----~----------GsGKsT~~~~L~~~l~-~~g~~v-~~~~~~~~~ 40 (197)
T 2z0h_A 2 FITFEGI----D----------GSGKSTQIQLLAQYLE-KRGKKV-ILKREPGGT 40 (197)
T ss_dssp EEEEECS----T----------TSSHHHHHHHHHHHHH-HCCC-E-EEEESSCSS
T ss_pred EEEEECC----C----------CCCHHHHHHHHHHHHH-HCCCeE-EEeeCCCCC
Confidence 6777775 3 8999999999999994 568776 577887643
No 48
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.98 E-value=0.18 Score=42.06 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=30.4
Q ss_pred hhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 60 LDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 60 l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
|++......|++|+++|. - |.||||++.-|++.|+ ..|.++.
T Consensus 4 ~~~~~~~~~~~~i~l~G~----~----------GsGKsT~~~~L~~~l~-~~~~~~~ 45 (186)
T 2yvu_A 4 LTTYKCIEKGIVVWLTGL----P----------GSGKTTIATRLADLLQ-KEGYRVE 45 (186)
T ss_dssp ----CCCSCCEEEEEECC----T----------TSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred cccccccCCCcEEEEEcC----C----------CCCHHHHHHHHHHHHH-hcCCeEE
Confidence 444344467999999997 4 8999999999999995 5566553
No 49
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.23 E-value=0.16 Score=44.94 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=32.7
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCC
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGP 126 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP 126 (400)
||+|++-|+ - |+||||.+--|++.|. . |.+ +...|||.-.|
T Consensus 2 ~kFI~~EG~----d----------GsGKsTq~~~L~~~L~-~-~~~-v~~~~eP~~t~ 42 (205)
T 4hlc_A 2 SAFITFEGP----E----------GSGKTTVINEVYHRLV-K-DYD-VIMTREPGGVP 42 (205)
T ss_dssp CEEEEEECC----T----------TSCHHHHHHHHHHHHT-T-TSC-EEEEESSTTCH
T ss_pred CCEEEEECC----C----------CCcHHHHHHHHHHHHH-C-CCC-EEEeeCCCCCh
Confidence 788998886 3 9999999999999994 4 666 45679996444
No 50
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.04 E-value=0.15 Score=43.66 Aligned_cols=47 Identities=19% Similarity=0.056 Sum_probs=35.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPT 127 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~ 127 (400)
..|++|+++|. - |.||||++.-|++.+...+....--+.|+|-.|.+
T Consensus 10 ~~~~~i~l~G~----s----------GsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~ 56 (204)
T 2qor_A 10 ARIPPLVVCGP----S----------GVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKET 56 (204)
T ss_dssp CCCCCEEEECC----T----------TSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC
T ss_pred ccCCEEEEECC----C----------CCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCC
Confidence 46899999985 4 99999999999988732144444567899887765
No 51
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.83 E-value=0.2 Score=49.68 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=29.0
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhc-CCcEEEE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFL-DKKVVTC 118 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~l-gk~~~~~ 118 (400)
+.+.|+|++ +- |+|||||+..|+.+|. .. |+++.+.
T Consensus 99 ~~~vI~ivG----~~----------GvGKTT~a~~LA~~l~-~~~G~kVllv 135 (433)
T 2xxa_A 99 PPAVVLMAG----LQ----------GAGKTTSVGKLGKFLR-EKHKKKVLVV 135 (433)
T ss_dssp SSEEEEEEC----ST----------TSSHHHHHHHHHHHHH-HTSCCCEEEE
T ss_pred CCeEEEEEC----CC----------CCCHHHHHHHHHHHHH-HhcCCeEEEE
Confidence 356787775 36 9999999999999994 66 9888753
No 52
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.66 E-value=0.22 Score=47.23 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=30.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
+.++.|.|++ | - |+|||||+.-|+..+ +..|+++...
T Consensus 103 ~~~~vI~ivG--~--~----------G~GKTT~~~~LA~~l-~~~g~kVlli 139 (320)
T 1zu4_A 103 NRLNIFMLVG--V--N----------GTGKTTSLAKMANYY-AELGYKVLIA 139 (320)
T ss_dssp TSCEEEEEES--S--T----------TSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCeEEEEEC--C--C----------CCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 4588999997 3 6 999999999999999 4678887664
No 53
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.64 E-value=0.2 Score=45.33 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=33.3
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCccc
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFG 129 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~FG 129 (400)
+|++|++.|+ - |.||||.+--|++.|. . + ...+|+|.-|.-+|
T Consensus 4 ~g~~i~~eG~----~----------g~GKst~~~~l~~~l~-~---~-~~~~~ep~~~t~~g 46 (216)
T 3tmk_A 4 RGKLILIEGL----D----------RTGKTTQCNILYKKLQ-P---N-CKLLKFPERSTRIG 46 (216)
T ss_dssp CCCEEEEEEC----S----------SSSHHHHHHHHHHHHC-S---S-EEEEESSCTTSHHH
T ss_pred CCeEEEEECC----C----------CCCHHHHHHHHHHHhc-c---c-ceEEEecCCCChHH
Confidence 5999999997 4 9999999999999994 2 2 46789995343343
No 54
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.41 E-value=0.35 Score=43.14 Aligned_cols=43 Identities=26% Similarity=0.248 Sum_probs=34.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGP 126 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP 126 (400)
+.|++|++.|+ - |.||||.+.-|++.|+ . |..+ ...|+|.-.|
T Consensus 24 ~~g~~i~i~G~----~----------GsGKsT~~~~l~~~l~-~-~~~~-~~~~~p~~~~ 66 (229)
T 4eaq_A 24 AMSAFITFEGP----E----------GSGKTTVINEVYHRLV-K-DYDV-IMTREPGGVP 66 (229)
T ss_dssp CCCEEEEEECC----T----------TSCHHHHHHHHHHHHT-T-TSCE-EEECTTTTCH
T ss_pred CCCeEEEEEcC----C----------CCCHHHHHHHHHHHHh-c-CCCc-eeecCCCCCc
Confidence 57999999997 3 9999999999999995 4 6654 5678887554
No 55
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.26 E-value=0.22 Score=40.83 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=22.5
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+++|+++|. . |.||||++..|++.|+
T Consensus 3 ~~~i~l~G~----~----------GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGG----S----------SAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECC----T----------TSSHHHHHHHHHHHSS
T ss_pred ceEEEEECC----C----------CCCHHHHHHHHHHhcC
Confidence 678999996 4 9999999999998874
No 56
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.19 E-value=0.24 Score=43.38 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=30.6
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCC
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGP 126 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP 126 (400)
+|++|++.|+ - |.||||.+-.|++.|. + +.++|||.-.+
T Consensus 1 ~~~~i~~~G~----~----------g~GKtt~~~~l~~~l~---~---~~~~~Ep~~~~ 39 (241)
T 2ocp_A 1 GPRRLSIEGN----I----------AVGKSTFVKLLTKTYP---E---WHVATEPVATW 39 (241)
T ss_dssp CCEEEEEEEC----T----------TSSHHHHHHHHHHHCT---T---SEEECCCGGGT
T ss_pred CCeEEEEEcC----C----------CCCHHHHHHHHHHHcC---C---Ceeeecchhhh
Confidence 3789999997 4 9999999999998883 2 35689986544
No 57
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.12 E-value=0.24 Score=41.33 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=31.1
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCc
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPT 127 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~ 127 (400)
+|++|+++|. - |.||||++.-|++.|+ |.+ +..+++|.-++.
T Consensus 3 ~~~~I~l~G~----~----------GsGKsT~~~~L~~~l~---g~~-~~~~~~~~~~~~ 44 (204)
T 2v54_A 3 RGALIVFEGL----D----------KSGKTTQCMNIMESIP---ANT-IKYLNFPQRSTV 44 (204)
T ss_dssp CCCEEEEECC----T----------TSSHHHHHHHHHHTSC---GGG-EEEEESSCTTSH
T ss_pred CCcEEEEEcC----C----------CCCHHHHHHHHHHHHC---CCc-eEEEecCCCCCc
Confidence 4789999997 3 8999999998888661 333 455788875443
No 58
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.42 E-value=0.54 Score=38.48 Aligned_cols=29 Identities=31% Similarity=0.315 Sum_probs=22.9
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
|+||||++.-|++.|. ..|... ...|+|.
T Consensus 10 GsGKsT~~~~L~~~l~-~~g~~~-i~~d~~~ 38 (195)
T 2pbr_A 10 GSGKTTQAKKLYEYLK-QKGYFV-SLYREPG 38 (195)
T ss_dssp TSCHHHHHHHHHHHHH-HTTCCE-EEEESSC
T ss_pred CCCHHHHHHHHHHHHH-HCCCeE-EEEeCCC
Confidence 8999999999999884 457664 4568875
No 59
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.38 E-value=0.3 Score=40.26 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.+++|+++|. - |.||||++.-|++.|+
T Consensus 3 ~~~~~I~l~G~----~----------GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGH----P----------ATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEES----T----------TSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHHcC
Confidence 35789999997 3 8999999999988773
No 60
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.96 E-value=0.35 Score=39.55 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.9
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
|++|+++|. - |.||||++.-|++.|+
T Consensus 3 ~~~I~i~G~----~----------GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGV----P----------GVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECC----T----------TSCHHHHHHHHHHHHH
T ss_pred CeEEEEECC----C----------CCCHHHHHHHHHHHHH
Confidence 678999986 4 8999999999999885
No 61
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.82 E-value=0.48 Score=47.74 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=29.9
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
.+++|++++- - |+|||||+..|+..| +..|+++...
T Consensus 99 ~p~vIlivG~----~----------G~GKTTt~~kLA~~l-~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGI----Q----------GSGKTTTVAKLARYF-QKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECC----T----------TSSHHHHHHHHHHHH-HTTTCCEEEE
T ss_pred CCeEEEEECc----C----------CCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 3678999885 4 999999999999999 4679887653
No 62
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=87.54 E-value=0.51 Score=44.64 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
+.|++|++++- - |+|||||+.-|+..+. .-|+++..
T Consensus 102 ~~~~vi~ivG~----~----------GsGKTTl~~~LA~~l~-~~g~kV~l 137 (306)
T 1vma_A 102 EPPFVIMVVGV----N----------GTGKTTSCGKLAKMFV-DEGKSVVL 137 (306)
T ss_dssp SSCEEEEEECC----T----------TSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCCeEEEEEcC----C----------CChHHHHHHHHHHHHH-hcCCEEEE
Confidence 45889999982 5 9999999999999994 56777654
No 63
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.30 E-value=0.72 Score=42.91 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=34.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP 122 (400)
.+||+.++..- |- |.||||+++.++..+ ...|+++.+..=.|
T Consensus 3 ~~g~l~I~~~~---kg----------GvGKTt~a~~la~~l-~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 3 ARGRLKVFLGA---AP----------GVGKTYAMLQAAHAQ-LRQGVRVMAGVVET 44 (228)
T ss_dssp CCCCEEEEEES---ST----------TSSHHHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred CCceEEEEEEC---CC----------CCcHHHHHHHHHHHH-HHCCCCEEEEEeCC
Confidence 46888766654 34 999999999999999 57899998777776
No 64
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.20 E-value=0.61 Score=42.39 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=30.1
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
..+|.+++.|+- |-||||.++||+... ...|+++...
T Consensus 26 ~~~g~i~v~tG~---------------GkGKTTaA~GlalRA-~g~G~rV~~v 62 (196)
T 1g5t_A 26 EERGIIIVFTGN---------------GKGKTTAAFGTAARA-VGHGKNVGVV 62 (196)
T ss_dssp -CCCCEEEEESS---------------SSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred ccCceEEEECCC---------------CCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 357999999876 999999999999888 4679987654
No 65
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.17 E-value=0.32 Score=39.83 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=18.4
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
++++|+++|. - |.||||++.-|++.|+
T Consensus 4 ~~~~I~l~G~----~----------GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGP----F----------GVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECC----C--------------CHHHHHHHHHST
T ss_pred CCeEEEEECC----C----------CCCHHHHHHHHHHhcC
Confidence 4789999997 3 8999999998887774
No 66
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.79 E-value=0.58 Score=38.77 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=27.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
++|++|++||. - |.||||++.-|++.|. ..|...+
T Consensus 3 ~~g~~i~l~G~----~----------GsGKST~~~~L~~~l~-~~g~~~i 37 (179)
T 2pez_A 3 MRGCTVWLTGL----S----------GAGKTTVSMALEEYLV-CHGIPCY 37 (179)
T ss_dssp -CCEEEEEECC----T----------TSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCcEEEEECC----C----------CCCHHHHHHHHHHHHh-hCCCcEE
Confidence 46899999986 4 9999999999999883 3465544
No 67
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.55 E-value=0.73 Score=43.03 Aligned_cols=38 Identities=26% Similarity=0.203 Sum_probs=29.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
+.|+.|.++|- - |+|||||+.-|+..+...-|+++...
T Consensus 103 ~~g~vi~lvG~----~----------GsGKTTl~~~LA~~l~~~~G~~V~lv 140 (296)
T 2px0_A 103 IHSKYIVLFGS----T----------GAGKTTTLAKLAAISMLEKHKKIAFI 140 (296)
T ss_dssp CCSSEEEEEES----T----------TSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCcEEEEECC----C----------CCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 35888888873 4 99999999999999943368776554
No 68
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.49 E-value=0.43 Score=41.16 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=31.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQG 125 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~G 125 (400)
+.|++|+++| |. |.||||+..-|++.+...+.......-|.|..|
T Consensus 6 ~~g~~i~l~G----ps----------GsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~ 50 (208)
T 3tau_A 6 ERGLLIVLSG----PS----------GVGKGTVREAVFKDPETSFDYSISMTTRLPREG 50 (208)
T ss_dssp CCCCEEEEEC----CT----------TSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred CCCcEEEEEC----cC----------CCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence 5699999987 45 999999999888776311333334456666554
No 69
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.30 E-value=0.57 Score=42.00 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=28.4
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
++++|+++|+ - |.||||++.-|++.|. .+|...+
T Consensus 3 ~~~lIvl~G~----p----------GSGKSTla~~La~~L~-~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGL----P----------GVGKSTFSKNLAKILS-KNNIDVI 36 (260)
T ss_dssp CCEEEEEECC----T----------TSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCEEEEEEcC----C----------CCCHHHHHHHHHHHHH-hCCCEEE
Confidence 3679999998 3 8999999999999984 6787765
No 70
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.94 E-value=0.65 Score=46.44 Aligned_cols=35 Identities=23% Similarity=0.160 Sum_probs=29.3
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
.+++|+++|- - |+|||||+.-|+..| +..|+++..
T Consensus 96 ~~~vI~lvG~----~----------GsGKTTt~~kLA~~l-~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGV----Q----------GSGKTTTAGKLAYFY-KKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCC----T----------TSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCeEEEEECC----C----------CCCHHHHHHHHHHHH-HHcCCeEEE
Confidence 4788998873 5 999999999999999 467888755
No 71
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.77 E-value=0.91 Score=39.88 Aligned_cols=39 Identities=18% Similarity=-0.131 Sum_probs=29.8
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
+.|.++| |. |.||||++..|+..|. ..|.++.+.-+.|.
T Consensus 5 ~~i~i~G----~s----------GsGKTTl~~~L~~~l~-~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVG----YK----------HSGKTTLMEKWVAAAV-REGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEEC----CT----------TSSHHHHHHHHHHHHH-HTTCCEEEEECCC-
T ss_pred EEEEEEC----CC----------CCCHHHHHHHHHHhhH-hcCCeeeEEEeCCC
Confidence 4666776 56 9999999999999994 66888766666553
No 72
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=85.50 E-value=0.44 Score=41.73 Aligned_cols=30 Identities=43% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEEecCCCC
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQ 124 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~ 124 (400)
|+||||.+--|++.|. ..|.++ ...|+|.-
T Consensus 10 GsGKsTq~~~L~~~L~-~~g~~v-~~treP~~ 39 (197)
T 3hjn_A 10 GSGKSTQIQLLAQYLE-KRGKKV-ILKREPGG 39 (197)
T ss_dssp TSSHHHHHHHHHHHHH-HTTCCE-EEEESSCS
T ss_pred CCCHHHHHHHHHHHHH-HCCCcE-EEEECCCC
Confidence 9999999999999994 678875 56899963
No 73
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.03 E-value=0.79 Score=42.62 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=28.7
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
.|+.|.+++ |- |+||||++.-|+..+ +..|+++...
T Consensus 97 ~~~~i~i~g----~~----------G~GKTT~~~~la~~~-~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVG----LQ----------GSGKTTTAAKLALYY-KGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEEC----CT----------TTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCeEEEEEC----CC----------CCCHHHHHHHHHHHH-HHcCCeEEEe
Confidence 578888875 46 999999999999999 4667776553
No 74
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=85.01 E-value=0.76 Score=38.72 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=28.1
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCc
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPT 127 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~ 127 (400)
|.||||+.--|+.-+....|.....+-|.|.-|-+
T Consensus 11 GaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~ 45 (186)
T 3a00_A 11 GTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp SSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC
T ss_pred CCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc
Confidence 99999999999887743567777788888887754
No 75
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.01 E-value=0.57 Score=38.62 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=22.9
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
++++|+++|. - |.||||++.-|++.|+
T Consensus 8 ~~~~I~l~G~----~----------GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGG----P----------GSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEEC----T----------TSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECC----C----------CCCHHHHHHHHHHHhC
Confidence 5789999996 4 8999999999988773
No 76
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.88 E-value=0.49 Score=38.97 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.|+.|+++|. - |+||||++.-|++.++
T Consensus 3 ~g~~I~l~G~----~----------GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 3 VGQAVIFLGP----P----------GAGKGTQASRLAQELG 29 (186)
T ss_dssp CEEEEEEECC----T----------TSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECC----C----------CCCHHHHHHHHHHHhC
Confidence 4778999986 4 8999999999988773
No 77
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.77 E-value=0.62 Score=39.56 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|+.|+++|. - |.||||++.-|++.|
T Consensus 23 ~~~~~i~l~G~----~----------GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGY----M----------GAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECC----T----------TSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcC----C----------CCCHHHHHHHHHHHc
Confidence 45889999985 4 999999999999877
No 78
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.57 E-value=0.59 Score=38.54 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=21.6
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
.++.|+++|. - |.||||++.-|++.|
T Consensus 4 ~~~~i~l~G~----~----------GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGL----M----------GAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECS----T----------TSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC----C----------CCCHHHHHHHHHHHh
Confidence 3678888886 4 999999999999887
No 79
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=84.56 E-value=0.7 Score=40.11 Aligned_cols=29 Identities=28% Similarity=0.155 Sum_probs=24.0
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
|.||||++.-|+.+| + .|+++.+.=-.|.
T Consensus 24 GvGKTTl~~~La~~l-~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 24 GSGKTTLTGEFGRYL-E-DNYKVAYVNLDTG 52 (262)
T ss_dssp TSSHHHHHHHHHHHH-T-TTSCEEEEECCSS
T ss_pred CCCHHHHHHHHHHHH-H-CCCeEEEEeCCCC
Confidence 899999999999999 5 7888776555553
No 80
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=84.54 E-value=0.56 Score=38.29 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=21.6
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+++|+++|. - |.||||++.-|++.++
T Consensus 3 ~~~I~l~G~----~----------GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGG----P----------GAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECC----T----------TSSHHHHHHHHHHHHC
T ss_pred ceEEEEECC----C----------CCCHHHHHHHHHHHhC
Confidence 578889886 3 8999999999988773
No 81
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=84.41 E-value=0.94 Score=36.88 Aligned_cols=31 Identities=26% Similarity=0.142 Sum_probs=24.4
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcE
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKV 115 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~ 115 (400)
++|+|+|+ - |.||||++.-|++.|+ ..|...
T Consensus 2 ~~I~i~G~----~----------GsGKsT~~~~L~~~l~-~~g~~~ 32 (194)
T 1nks_A 2 KIGIVTGI----P----------GVGKSTVLAKVKEILD-NQGINN 32 (194)
T ss_dssp EEEEEEEC----T----------TSCHHHHHHHHHHHHH-TTTCCE
T ss_pred eEEEEECC----C----------CCCHHHHHHHHHHHHH-hcCceE
Confidence 46888886 3 8999999999999995 456543
No 82
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.15 E-value=0.96 Score=41.14 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=33.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPT 127 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~ 127 (400)
..|.++++|| |. |.||||...+++..+. .-|+++.. =+|+.+..
T Consensus 10 ~~G~i~litG----~m----------GsGKTT~ll~~~~r~~-~~g~kVli--~~~~~d~r 53 (223)
T 2b8t_A 10 KIGWIEFITG----PM----------FAGKTAELIRRLHRLE-YADVKYLV--FKPKIDTR 53 (223)
T ss_dssp -CCEEEEEEC----ST----------TSCHHHHHHHHHHHHH-HTTCCEEE--EEECCCGG
T ss_pred CCcEEEEEEC----CC----------CCcHHHHHHHHHHHHH-hcCCEEEE--EEeccCch
Confidence 4599999998 35 8999999999999884 56888764 37777643
No 83
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.14 E-value=0.39 Score=40.31 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=22.5
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
|+||||.+--|++.|. ..|.+ +..+|+|.
T Consensus 10 GsGKsTl~~~L~~~l~-~~g~~-v~~~~~~~ 38 (214)
T 1gtv_A 10 GAGKRTLVEKLSGAFR-AAGRS-VATLAFPR 38 (214)
T ss_dssp EEEHHHHHHHHHHHHH-EEEEE-EEEEESSE
T ss_pred CCCHHHHHHHHHHHHH-hcCCe-EEEEeecC
Confidence 9999999999999995 44544 45678765
No 84
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=83.65 E-value=0.83 Score=37.43 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
..|+.|+++|. - |.||||++.-|++.+
T Consensus 6 ~~g~~i~l~G~----~----------GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGV----S----------GSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECS----T----------TSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcC----C----------CCCHHHHHHHHHHhh
Confidence 46889999985 4 999999988887765
No 85
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.57 E-value=1 Score=44.86 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=28.1
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
.++.|.+++ |- |+||||++..|+..+. ..|+++..
T Consensus 97 ~~~vi~i~G----~~----------GsGKTT~~~~LA~~l~-~~g~~Vll 131 (425)
T 2ffh_A 97 DRNLWFLVG----LQ----------GSGKTTTAAKLALYYK-GKGRRPLL 131 (425)
T ss_dssp SSEEEEEEC----CT----------TSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCeEEEEEC----CC----------CCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 477888875 46 9999999999999994 66777654
No 86
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=83.22 E-value=0.55 Score=46.54 Aligned_cols=39 Identities=26% Similarity=0.203 Sum_probs=29.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
.+|++|.|-|+ - |.||||.+.-|++.|. ..| +...|||.
T Consensus 47 ~~~~fIt~EG~----d----------GsGKTT~~~~Lae~L~-~~g---vv~trEPg 85 (376)
T 1of1_A 47 PTLLRVYIDGP----H----------GMGKTTTTQLLVALGS-RDD---IVYVPEPM 85 (376)
T ss_dssp CEEEEEEECSS----T----------TSSHHHHHHHHHC-----CC---EEEECCCH
T ss_pred CCceEEEEECC----C----------CCCHHHHHHHHHHHhh-hCC---EEEEeCCC
Confidence 46889999887 4 9999999999999884 444 88999993
No 87
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.22 E-value=0.72 Score=37.01 Aligned_cols=16 Identities=31% Similarity=0.123 Sum_probs=14.2
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++.-|++.++
T Consensus 11 GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 11 CCFKSTVAAKLSKELK 26 (173)
T ss_dssp SSSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999988873
No 88
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.00 E-value=1.1 Score=41.83 Aligned_cols=35 Identities=26% Similarity=0.160 Sum_probs=28.5
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
++.|.+++ |- |+||||++.-|+..+ +..|+++...
T Consensus 98 ~~vi~i~G----~~----------G~GKTT~~~~la~~~-~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVG----VQ----------GTGKTTTAGKLAYFY-KKKGFKVGLV 132 (297)
T ss_dssp SEEEEEEC----SS----------CSSTTHHHHHHHHHH-HHTTCCEEEE
T ss_pred CeEEEEEC----CC----------CCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 78888875 45 999999999999999 4678887653
No 89
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=82.87 E-value=1.3 Score=38.02 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=28.4
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
+.|++|+++|. - |.||||++.-|++.|+...|.+.+
T Consensus 23 ~~~~~i~~~G~----~----------GsGKsT~~~~l~~~l~~~~g~~~~ 58 (211)
T 1m7g_A 23 QRGLTIWLTGL----S----------ASGKSTLAVELEHQLVRDRRVHAY 58 (211)
T ss_dssp SSCEEEEEECS----T----------TSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCCEEEEECC----C----------CCCHHHHHHHHHHHhccccCCcEE
Confidence 56899999987 4 899999999999999424465443
No 90
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=82.79 E-value=0.91 Score=37.75 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=27.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
+.|++|.++|. - |+||||++--|+.-+....|.......|+|.
T Consensus 4 ~~g~~i~l~G~----~----------GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~ 46 (207)
T 2j41_A 4 EKGLLIVLSGP----S----------GVGKGTVRKRIFEDPSTSYKYSISMTTRQMR 46 (207)
T ss_dssp CCCCEEEEECS----T----------TSCHHHHHHHHHHCTTCCEECCCCEECSCCC
T ss_pred CCCCEEEEECC----C----------CCCHHHHHHHHHHhhCCCeEEecccccCCCC
Confidence 45889999985 4 9999999888876651112222223456664
No 91
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=82.52 E-value=0.68 Score=37.52 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=20.7
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
++|+++|. - |.||||++.-|++.|+
T Consensus 3 ~~I~l~G~----~----------GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGA----R----------GCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESC----T----------TSSHHHHHHHHHHHHT
T ss_pred ceEEEECC----C----------CCCHHHHHHHHHHHhC
Confidence 46888884 4 9999999999998874
No 92
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.22 E-value=0.84 Score=38.41 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.4
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQA 106 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~a 106 (400)
++++.|++||. - |.||||++.-|++.
T Consensus 8 ~~~~~I~l~G~----~----------GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGT----P----------GTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECS----T----------TSSHHHHHHHHHHH
T ss_pred CCCCEEEEECC----C----------CCCHHHHHHHHHHh
Confidence 46889999996 3 89999999999887
No 93
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=82.12 E-value=0.93 Score=38.51 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|++|+++|. - |.||||++.-|+..+
T Consensus 27 ~~g~~i~l~G~----~----------GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGV----S----------GSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECC----T----------TSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECC----C----------CCCHHHHHHHHHHhh
Confidence 56899999985 4 999999999888766
No 94
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.09 E-value=0.91 Score=38.59 Aligned_cols=33 Identities=33% Similarity=0.303 Sum_probs=27.3
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKK 114 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~ 114 (400)
+.|++|.++|. . |+||||++.-|+..|. .-|..
T Consensus 23 ~~g~~i~l~G~----s----------GsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTGL----S----------GSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp SCCEEEEEECS----T----------TSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHHHH-hcCce
Confidence 56999999985 5 9999999999999994 44554
No 95
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=82.09 E-value=0.52 Score=45.63 Aligned_cols=39 Identities=26% Similarity=0.203 Sum_probs=28.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
+.|++|.|-|+ - |.||||.+.-|++.|. ..| +...|||.
T Consensus 2 ~~~~fI~~EG~----d----------GsGKTT~~~~La~~L~-~~g---v~~trEPg 40 (331)
T 1e2k_A 2 PTLLRVYIDGP----H----------GMGKTTTTQLLVALGS-RDD---IVYVPEPM 40 (331)
T ss_dssp CEEEEEEECSC----T----------TSSHHHHHHHHTC-----CC---EEEECCCH
T ss_pred CccEEEEEECC----C----------CCCHHHHHHHHHHHhh-hCC---EEEEeCCC
Confidence 34778888876 4 9999999999998884 444 88899995
No 96
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=81.78 E-value=1.1 Score=37.69 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=23.3
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
..+++|+++|. - |.||||++.-|++.++
T Consensus 18 ~~~~~I~l~G~----~----------GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGP----P----------GAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECC----T----------TSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHHhC
Confidence 45789999986 3 8999999999988773
No 97
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=81.72 E-value=1.4 Score=40.92 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=20.3
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+..+|.||| |. |.||||++.-|++.|+
T Consensus 4 ~~~iIgItG----~s----------GSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTG----SS----------GAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEES----CC-------------CCTHHHHHHHHHH
T ss_pred CceEEEEEC----CC----------CCCHHHHHHHHHHHHh
Confidence 356888998 56 9999999999999885
No 98
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=81.34 E-value=0.84 Score=39.57 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=24.3
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHH-HHHhhhcCCcEEEEecCCCCCCc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLC-QALGAFLDKKVVTCLRQPLQGPT 127 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~-~aL~~~lgk~~~~~lRqPS~GP~ 127 (400)
+.|++|.++|- - |.||||+..-|+ ..+. ......-..-|.|..|-+
T Consensus 25 ~~G~ii~l~Gp----~----------GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~g~~ 71 (231)
T 3lnc_A 25 SVGVILVLSSP----S----------GCGKTTVANKLLEKQKN-NIVKSVSVTTRAARKGEK 71 (231)
T ss_dssp ECCCEEEEECS----C----------C----CHHHHHHC-----CEEECCCEESSCCCTTCC
T ss_pred CCCCEEEEECC----C----------CCCHHHHHHHHHhcCCC-CcccccccCCCCCCcccc
Confidence 46899988874 4 999999999888 6552 222222334567766543
No 99
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=81.18 E-value=1.2 Score=44.58 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=23.4
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEEec--CCCCCCcccc
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTCLR--QPLQGPTFGI 130 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~lR--qPS~GP~FGi 130 (400)
|+||||+|..|+.+| ++.|+++.+.=- ++++.-.||.
T Consensus 337 g~Gktt~a~~lA~~l-~~~g~~vllvD~Dp~~~l~~~l~~ 375 (589)
T 1ihu_A 337 GVGKTTMAAAIAVRL-ADMGFDVHLTTSDPAAHLSMTLNG 375 (589)
T ss_dssp TSSHHHHHHHHHHHH-HHTTCCEEEEESCCC---------
T ss_pred CCChhhHHHHHHHHH-HHCCCcEEEEeCCCcccHhHHhcc
Confidence 999999999999999 588999877422 3566666765
No 100
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=81.08 E-value=1 Score=44.57 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=27.3
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
.+.|++++ |- |+|||||+..|+..+. ..|+++..
T Consensus 99 ~~vI~ivG----~~----------GvGKTTla~~La~~l~-~~G~kVll 132 (432)
T 2v3c_C 99 QNVILLVG----IQ----------GSGKTTTAAKLARYIQ-KRGLKPAL 132 (432)
T ss_dssp CCCEEEEC----CS----------SSSTTHHHHHHHHHHH-HHHCCEEE
T ss_pred CeEEEEEC----CC----------CCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 35787877 25 9999999999999994 66888764
No 101
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=81.03 E-value=0.96 Score=38.16 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=21.7
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
..++|+++|. - |.||||++.-|++.+
T Consensus 17 ~~~~I~l~G~----~----------GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGV----S----------GSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECS----T----------TSCHHHHHHHHHHHH
T ss_pred CCeEEEEECC----C----------CCCHHHHHHHHHHHh
Confidence 3578999986 3 999999999888877
No 102
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=80.82 E-value=1.1 Score=36.38 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=22.1
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
..++|+++|. - |.||||++.-|++.|+
T Consensus 5 ~~~~I~l~G~----~----------GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 5 KPNVVFVLGG----P----------GSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEES----T----------TSSHHHHHHHHHHHHC
T ss_pred cCcEEEEECC----C----------CCCHHHHHHHHHHHhC
Confidence 3578999986 3 8999999998888773
No 103
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.62 E-value=0.93 Score=37.42 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=22.1
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
.++.|+++|. - |.||||++.-|++.+
T Consensus 10 ~~~~i~i~G~----~----------GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGT----P----------GVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECS----T----------TSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeC----C----------CCCHHHHHHHHHHHh
Confidence 4678999985 4 999999999998877
No 104
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=80.56 E-value=1.1 Score=37.12 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=22.6
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.+++|+++|. - |.||||++.-|++.|+
T Consensus 11 ~~~~I~l~G~----~----------GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 11 KCKIIFIIGG----P----------GSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HSCEEEEEEC----T----------TSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECC----C----------CCCHHHHHHHHHHHhC
Confidence 3678999996 4 8999999999988773
No 105
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=80.45 E-value=1.7 Score=38.40 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFG 129 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~FG 129 (400)
.+|+++++|| |. |.||||..++++.-+ ..-|+++.+ =+|+...-+|
T Consensus 6 ~~g~i~v~~G----~m----------gsGKTT~ll~~a~r~-~~~g~kV~v--~k~~~d~r~~ 51 (191)
T 1xx6_A 6 DHGWVEVIVG----PM----------YSGKSEELIRRIRRA-KIAKQKIQV--FKPEIDNRYS 51 (191)
T ss_dssp TCCEEEEEEC----ST----------TSSHHHHHHHHHHHH-HHTTCCEEE--EEEC------
T ss_pred CCCEEEEEEC----CC----------CCcHHHHHHHHHHHH-HHCCCEEEE--EEeccCccch
Confidence 4589999987 45 899999999999888 356777654 3577654443
No 106
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=79.97 E-value=1.2 Score=36.75 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=14.5
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++.-|++.|+
T Consensus 10 GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 10 GAGKSTISAEISKKLG 25 (205)
T ss_dssp TSCHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHhcC
Confidence 8999999999998884
No 107
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=79.92 E-value=0.66 Score=44.99 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=32.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
++|++|.|-|+ - |.||||.+.-|++.|. . +.. +...|||-
T Consensus 5 ~~~~fI~~EG~----d----------GaGKTT~~~~La~~L~-~-~~~-v~~trEPg 44 (334)
T 1p6x_A 5 VTIVRIYLDGV----Y----------GIGKSTTGRVMASAAS-G-GSP-TLYFPEPM 44 (334)
T ss_dssp EEEEEEEEECS----T----------TSSHHHHHHHHHSGGG-C-SSC-EEEECCCH
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHHhc-c-CCc-EEEEeCCC
Confidence 45889999987 4 9999999999999985 3 222 78899993
No 108
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=79.50 E-value=1.2 Score=38.15 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.|+.|+++|. - |.||||.+.-|++.|+
T Consensus 3 ~~~~I~l~G~----~----------GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGP----P----------GAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECC----T----------TSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECC----C----------CCCHHHHHHHHHHHcC
Confidence 4788999986 3 8999999999988773
No 109
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=79.39 E-value=0.92 Score=36.87 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=20.2
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
++.|+++|. - |.||||++.-|+..+
T Consensus 4 ~~~i~l~G~----~----------GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGP----M----------GAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECC----T----------TSCHHHHHHHHHHHT
T ss_pred CCeEEEECC----C----------CCCHHHHHHHHHHHh
Confidence 567888875 4 999999988888776
No 110
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=79.36 E-value=1.5 Score=36.74 Aligned_cols=44 Identities=14% Similarity=0.057 Sum_probs=27.3
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCC
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQG 125 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~G 125 (400)
.|++|+++| |. |.||||+..-|+.-+........-..-|.|..|
T Consensus 4 ~g~~i~i~G----ps----------GsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 4 MRKTLVLLG----AH----------GVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CCCEEEEEC----CT----------TSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CCCEEEEEC----CC----------CCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 588888887 45 999999998887765211222333445666655
No 111
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=79.11 E-value=0.7 Score=45.05 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=32.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhH-HHHHHHHhhhcCCcEEEEecCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTT-VGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTtt-iGL~~aL~~~lgk~~~~~lRqP 122 (400)
++|++|.+-|+ - |.||||++ --|++.|. .-|. +...|||
T Consensus 10 ~~~~~I~iEG~----~----------GaGKTT~~~~~L~~~l~-~~g~--vv~trEP 49 (341)
T 1osn_A 10 MGVLRIYLDGA----Y----------GIGKTTAAEEFLHHFAI-TPNR--ILLIGEP 49 (341)
T ss_dssp EEEEEEEEEES----S----------SSCTTHHHHHHHHTTTT-SGGG--EEEECCC
T ss_pred CCceEEEEeCC----C----------CCCHHHHHHHHHHHHHh-hCCc--EEEEeCC
Confidence 56899999987 4 99999999 88888884 4452 8899998
No 112
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=78.66 E-value=2.5 Score=36.76 Aligned_cols=38 Identities=18% Similarity=0.028 Sum_probs=29.6
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP 122 (400)
+.|.++| |. |.||||+...|...| ...|.++...-+.|
T Consensus 7 ~~i~i~G----~s----------GsGKTTl~~~l~~~l-~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAA----WS----------GTGKTTLLKKLIPAL-CARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEEC----CT----------TSCHHHHHHHHHHHH-HHTTCCEEEEEECC
T ss_pred eEEEEEe----CC----------CCCHHHHHHHHHHhc-cccCCceeEEeeCC
Confidence 4677777 56 999999999999999 46787766655554
No 113
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=78.58 E-value=1.2 Score=37.38 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=22.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
++.++|+++|. - |.||||++.-|++.++
T Consensus 13 ~~~~~I~l~G~----~----------GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGG----P----------GAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECS----T----------TSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECC----C----------CCCHHHHHHHHHHHcC
Confidence 34678999986 4 8999999998888763
No 114
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=78.16 E-value=1.4 Score=37.78 Aligned_cols=45 Identities=31% Similarity=0.338 Sum_probs=29.4
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCC
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGP 126 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP 126 (400)
.|+.|.+.| |- |.||||+.--|+.-+....|.......|.|..|-
T Consensus 3 ~g~~i~lvG----ps----------GaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~ 47 (198)
T 1lvg_A 3 GPRPVVLSG----PS----------GAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE 47 (198)
T ss_dssp --CCEEEEC----CT----------TSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC
T ss_pred CCCEEEEEC----CC----------CCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc
Confidence 466677766 45 9999999988877652234555555567777764
No 115
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=77.77 E-value=2.2 Score=36.78 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=28.6
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCcc
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTF 128 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~F 128 (400)
|+++++||- - |.||||+..+++.-+ ...|+++.. =+|....-+
T Consensus 3 g~i~vi~G~----~----------gsGKTT~ll~~~~~~-~~~g~~v~~--~~~~~d~r~ 45 (184)
T 2orw_A 3 GKLTVITGP----M----------YSGKTTELLSFVEIY-KLGKKKVAV--FKPKIDSRY 45 (184)
T ss_dssp CCEEEEEES----T----------TSSHHHHHHHHHHHH-HHTTCEEEE--EEEC-----
T ss_pred cEEEEEECC----C----------CCCHHHHHHHHHHHH-HHCCCeEEE--Eeecccccc
Confidence 778888874 4 899999999998877 345776553 356655433
No 116
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=77.66 E-value=1.1 Score=38.54 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=22.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
.+|..|+++|+ - |.||||.+.-|++.|
T Consensus 3 ~~~~~I~l~G~----~----------GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGA----P----------GSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEEC----T----------TSSHHHHHHHHHHHH
T ss_pred CCceEEEEECC----C----------CCCHHHHHHHHHHHh
Confidence 45778999886 3 899999999998877
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.89 E-value=1.4 Score=36.41 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQA 106 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~a 106 (400)
+.|+.|+++|. - |.||||+..-|+..
T Consensus 7 ~~g~~i~l~G~----~----------GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGH----P----------GSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEEC----T----------TSCHHHHHHHHHTC
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHhc
Confidence 46889999985 4 99999988777653
No 118
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=76.49 E-value=2 Score=35.67 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|++|.++|- - |+||||+..-|+.-+
T Consensus 5 ~~g~ii~l~Gp----~----------GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAP----S----------GAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECC----T----------TSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECc----C----------CCCHHHHHHHHHhhC
Confidence 35888888874 4 999999988877654
No 119
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=76.12 E-value=2.3 Score=38.12 Aligned_cols=46 Identities=17% Similarity=0.065 Sum_probs=33.4
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGP 126 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP 126 (400)
-.|++|+++| |. |.||||+..-|.+.+...+....-.+-|.|..|-
T Consensus 17 ~~g~~ivl~G----PS----------GaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 17 QGRKTLVLIG----AS----------GVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp CSCCEEEEEC----CT----------TSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CCCCEEEEEC----cC----------CCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 3689999887 56 9999999998887663234444456678888764
No 120
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=75.99 E-value=1.9 Score=39.73 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=23.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
..+++|+++|. - |.||||++--|++.+
T Consensus 31 ~~~~livl~G~----s----------GsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQ----P----------GSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECC----T----------TSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHHh
Confidence 45889999985 5 999999999998876
No 121
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=75.90 E-value=1.4 Score=37.75 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=23.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.++.|+|+|. - |.||||.+.-|++.|+
T Consensus 3 ~~~~~I~l~G~----~----------GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 3 ADPLKVMISGA----P----------ASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCSCCEEEEES----T----------TSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHHhC
Confidence 34678899886 3 8999999999999884
No 122
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=75.83 E-value=1.4 Score=36.43 Aligned_cols=16 Identities=56% Similarity=0.742 Sum_probs=14.3
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++.-|++.|+
T Consensus 12 GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 12 GSGKSTIGRRLAKALG 27 (184)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC
Confidence 8999999999998874
No 123
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=75.72 E-value=3.1 Score=38.27 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=32.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFG 129 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~FG 129 (400)
.+|++.++|| |. |.||||.+++++.-+ ..-|+++++. +|+...-+|
T Consensus 26 ~~G~l~vitG----~M----------gsGKTT~lL~~a~r~-~~~g~kVli~--k~~~d~R~g 71 (214)
T 2j9r_A 26 QNGWIEVICG----SM----------FSGKSEELIRRVRRT-QFAKQHAIVF--KPCIDNRYS 71 (214)
T ss_dssp CSCEEEEEEC----ST----------TSCHHHHHHHHHHHH-HHTTCCEEEE--ECC------
T ss_pred CCCEEEEEEC----CC----------CCcHHHHHHHHHHHH-HHCCCEEEEE--EeccCCcch
Confidence 5699999987 46 899999999999988 4568887643 687775554
No 124
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=75.71 E-value=2.2 Score=41.21 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCC
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQ 124 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~ 124 (400)
.|.+|+|+|= - |+|||||...|+..+. .-....+.++.+|.-
T Consensus 122 ~~g~i~I~Gp----t----------GSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~e 163 (356)
T 3jvv_A 122 PRGLVLVTGP----T----------GSGKSTTLAAMLDYLN-NTKYHHILTIEDPIE 163 (356)
T ss_dssp SSEEEEEECS----T----------TSCHHHHHHHHHHHHH-HHCCCEEEEEESSCC
T ss_pred CCCEEEEECC----C----------CCCHHHHHHHHHhccc-CCCCcEEEEccCcHH
Confidence 3558888873 4 9999999999999884 443455677887753
No 125
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=75.24 E-value=1.5 Score=39.37 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.3
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++.-|++.++
T Consensus 11 GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 11 CSGKTDMAIQIAQETG 26 (253)
T ss_dssp TSSHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHhcCC
Confidence 9999999999988773
No 126
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.63 E-value=1.1 Score=43.90 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.3
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+++|+|+|+|- - |.||||+++-|++.|+
T Consensus 38 ~~~~lIvI~GP----T----------gsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGA----T----------GTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECS----T----------TSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECC----C----------CCCHHHHHHHHHHHCC
Confidence 45789999884 3 8999999999998874
No 127
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=74.36 E-value=2 Score=34.95 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=14.2
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++.-|++.|+
T Consensus 17 GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 17 GSGKSSLAQELGLALK 32 (168)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 8999999999988874
No 128
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=74.20 E-value=1.7 Score=37.19 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.|..|.|.| |- |+||||++.-|+..+.
T Consensus 20 ~~g~~v~I~G----~s----------GsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSG----AP----------GSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEEC----CT----------TSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CC----------CCCHHHHHHHHHHHHh
Confidence 5688888887 45 9999999998888884
No 129
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=74.09 E-value=1 Score=39.98 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=26.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP 122 (400)
.++++|++.|+ - |.||||.+--|++.|. + +..+++|
T Consensus 22 ~~~~~I~ieG~----~----------GsGKST~~~~L~~~l~---~---~~~i~ep 57 (263)
T 1p5z_B 22 TRIKKISIEGN----I----------AAGKSTFVNILKQLCE---D---WEVVPEP 57 (263)
T ss_dssp -CCEEEEEECS----T----------TSSHHHHHTTTGGGCT---T---EEEECCC
T ss_pred cCceEEEEECC----C----------CCCHHHHHHHHHHhcC---C---CEEEecc
Confidence 46899999997 3 9999999988887762 2 4456665
No 130
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=74.08 E-value=1.9 Score=38.32 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=23.7
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.+.+++|+++|. - |.||||++.-|++.++
T Consensus 29 ~~~~~~i~l~G~----~----------GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQ----S----------GAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESC----G----------GGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECC----C----------CCCHHHHHHHHHHhcC
Confidence 355789999985 4 9999999999988773
No 131
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=73.85 E-value=1.8 Score=34.10 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=15.8
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHH
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGL 103 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL 103 (400)
++|+++|. - |.||||++.-|
T Consensus 2 ~~I~l~G~----~----------GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGM----P----------GSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECC----T----------TSCHHHHHHHH
T ss_pred cEEEEECC----C----------CCCHHHHHHHH
Confidence 36777775 3 99999988877
No 132
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=73.82 E-value=2.7 Score=42.77 Aligned_cols=24 Identities=29% Similarity=0.187 Sum_probs=20.6
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEE
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
|+|||||+..|+..|. ..|+++..
T Consensus 111 GvGKTTl~~kLA~~l~-~~G~kVll 134 (504)
T 2j37_W 111 GSGKTTTCSKLAYYYQ-RKGWKTCL 134 (504)
T ss_dssp TSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCCHHHHHHHHHHHHH-hCCCeEEE
Confidence 8999999999999995 66887654
No 133
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=73.77 E-value=1.7 Score=37.54 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=21.4
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
++++|+++|. - |.||||.+.-|++.|
T Consensus 6 ~~~~I~l~G~----~----------GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGA----P----------GSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEEC----T----------TSSHHHHHHHHHHHS
T ss_pred cCcEEEEECC----C----------CCCHHHHHHHHHHHc
Confidence 4678999986 3 899999998888876
No 134
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=73.29 E-value=3.5 Score=35.14 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=23.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.|.+|.|+|- - |.||||++.-|+..+.
T Consensus 20 ~~~~~i~i~G~----~----------GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDGL----S----------RSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEEC----T----------TSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHHHh
Confidence 46889999984 4 9999999999998883
No 135
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=73.28 E-value=4.2 Score=38.27 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=30.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
++...|.++|- - |+||||++.-|+.++ ...|+++.+.==.|+
T Consensus 77 ~~~~~I~i~G~----~----------G~GKSTl~~~L~~~l-~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 77 GNAHRVGITGV----P----------GVGKSTAIEALGMHL-IERGHRVAVLAVDPS 118 (355)
T ss_dssp CCSEEEEEECC----T----------TSSHHHHHHHHHHHH-HTTTCCEEEEEEC--
T ss_pred CCceEEEEECC----C----------CCCHHHHHHHHHHHH-HhCCCceEEEecCCC
Confidence 34556777773 4 899999999999999 467888776554544
No 136
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=72.79 E-value=2.6 Score=36.71 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=23.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
..++.|+++|. - |.||||++.-|++.|+
T Consensus 14 ~~~~~I~l~G~----~----------GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGP----P----------GAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECC----T----------TSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHHhC
Confidence 34678999886 3 8999999999998873
No 137
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=72.77 E-value=3.3 Score=42.32 Aligned_cols=36 Identities=33% Similarity=0.335 Sum_probs=30.1
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
..++++||| |. |.|||||...|...+ ...|+++..|
T Consensus 203 ~~~~~~I~G----~p----------GTGKTt~i~~l~~~l-~~~g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTG----GP----------GTGKSTTTKAVADLA-ESLGLEVGLC 238 (574)
T ss_dssp TCSEEEEEC----CT----------TSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred hCCEEEEEc----CC----------CCCHHHHHHHHHHHH-HhcCCeEEEe
Confidence 357899998 57 999999999999999 4678887765
No 138
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=71.95 E-value=2.6 Score=34.05 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=14.1
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++.-|++.|+
T Consensus 10 GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 10 CSGKSTVGSLLSRSLN 25 (168)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 8999999999988773
No 139
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=71.94 E-value=3.4 Score=34.43 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=29.1
Q ss_pred hhhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCc
Q 044054 59 VLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKK 114 (400)
Q Consensus 59 ~l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~ 114 (400)
.+.++...+.++-|+++| |. |.||||++..+++.+. .-+.+
T Consensus 42 ~l~~~~~~~~~~~~ll~G----~~----------G~GKT~la~~l~~~~~-~~~~~ 82 (242)
T 3bos_A 42 ALKSAASGDGVQAIYLWG----PV----------KSGRTHLIHAACARAN-ELERR 82 (242)
T ss_dssp HHHHHHHTCSCSEEEEEC----ST----------TSSHHHHHHHHHHHHH-HTTCC
T ss_pred HHHHHHhCCCCCeEEEEC----CC----------CCCHHHHHHHHHHHHH-HcCCe
Confidence 344433334677888887 45 9999999999999995 43544
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=71.66 E-value=2.5 Score=34.88 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=25.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKK 114 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~ 114 (400)
+.|+.++++| |- |.||||++..++..+...-|..
T Consensus 36 ~~g~~~~l~G----~~----------G~GKTtL~~~i~~~~~~~~g~~ 69 (180)
T 3ec2_A 36 EEGKGLTFVG----SP----------GVGKTHLAVATLKAIYEKKGIR 69 (180)
T ss_dssp GGCCEEEECC----SS----------SSSHHHHHHHHHHHHHHHSCCC
T ss_pred cCCCEEEEEC----CC----------CCCHHHHHHHHHHHHHHHcCCe
Confidence 3488888887 55 9999999999999884233443
No 141
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=71.55 E-value=4.6 Score=37.88 Aligned_cols=42 Identities=24% Similarity=0.126 Sum_probs=33.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
.+++.|.+++ |- |+||||+..-|+..+ ...|.++.+.=..|.
T Consensus 54 ~~~~~i~i~G----~~----------g~GKSTl~~~l~~~~-~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 54 GNTLRLGVTG----TP----------GAGKSTFLEAFGMLL-IREGLKVAVIAVDPS 95 (341)
T ss_dssp SCSEEEEEEE----CT----------TSCHHHHHHHHHHHH-HHTTCCEEEEEECCC
T ss_pred CCCEEEEEEc----CC----------CCCHHHHHHHHHHHH-HhcCCeEEEEeecCC
Confidence 5688888887 45 999999999999999 467887766656654
No 142
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=70.52 E-value=2.9 Score=44.69 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=23.6
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhc
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFL 111 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~l 111 (400)
-|-++|++. -. |.||||+|.|||++|. +.
T Consensus 34 ~~~l~I~gt---~s----------~vGKT~vt~gL~r~l~-~~ 62 (831)
T 4a0g_A 34 HPTYLIWSA---NT----------SLGKTLVSTGIAASFL-LQ 62 (831)
T ss_dssp SCEEEEEES---SS----------SSCHHHHHHHHHHHHH-SC
T ss_pred cccEEEEEC---CC----------CCCHHHHHHHHHHHHH-hc
Confidence 356888875 45 8999999999999994 65
No 143
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=70.07 E-value=2.9 Score=36.61 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
++..|.+.|. - |+||||++.-|++.++
T Consensus 26 ~~~~i~l~G~----~----------GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGP----P----------GSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECC----T----------TSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECC----C----------CCCHHHHHHHHHHHhC
Confidence 3678888885 3 9999999999998884
No 144
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=69.76 E-value=2.5 Score=34.06 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=18.3
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHH
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQ 105 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~ 105 (400)
++|+++|. - |.||||++.-|++
T Consensus 3 ~~I~i~G~----~----------GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGC----P----------GSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECC----T----------TSSHHHHHHHHHH
T ss_pred eEEEEecC----C----------CCCHHHHHHHHHh
Confidence 47888886 3 8999999988887
No 145
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=69.70 E-value=2.4 Score=39.12 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=30.7
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecC
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 121 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRq 121 (400)
.|+.|+++| |- |.||||+++-|++.....+.-.++..-|+
T Consensus 33 ~g~~ilI~G----ps----------GsGKStLA~~La~~g~~iIsdDs~~v~~~ 72 (205)
T 2qmh_A 33 YGLGVLITG----DS----------GVGKSETALELVQRGHRLIADDRVDVYQQ 72 (205)
T ss_dssp TTEEEEEEC----CC----------TTTTHHHHHHHHTTTCEEEESSEEEEEEC
T ss_pred CCEEEEEEC----CC----------CCCHHHHHHHHHHhCCeEEecchhheeec
Confidence 588899998 34 89999999999988755556666655554
No 146
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=69.30 E-value=4.5 Score=42.53 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=29.1
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
+|++|++||+ - |+||||++.-|++.|. ..|...+.
T Consensus 51 ~g~lIvLtGl----s----------GSGKSTlAr~La~~L~-~~G~~~v~ 85 (630)
T 1x6v_B 51 RGCTVWLTGL----S----------GAGKTTVSMALEEYLV-CHGIPCYT 85 (630)
T ss_dssp CCEEEEEECS----T----------TSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCCEEEEEeC----C----------CCCHHHHHHHHHHHHH-hcCCeEEE
Confidence 6889999997 4 8999999999999993 55776554
No 147
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=69.20 E-value=4 Score=34.58 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=26.3
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
+.|.+++|+|- - |.||||++.-++..+ ...|.+++
T Consensus 21 ~~G~~~~i~G~----~----------GsGKTtl~~~~~~~~-~~~~~~v~ 55 (247)
T 2dr3_A 21 PERNVVLLSGG----P----------GTGKTIFSQQFLWNG-LKMGEPGI 55 (247)
T ss_dssp ETTCEEEEEEC----T----------TSSHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCCcEEEEECC----C----------CCCHHHHHHHHHHHH-HhcCCeEE
Confidence 57999999884 4 999999999888777 34444443
No 148
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=68.19 E-value=3 Score=35.52 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=18.3
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHH
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQ 105 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~ 105 (400)
+++|.+||. . |+||||++.-|++
T Consensus 4 ~~~I~i~G~----~----------GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGG----I----------GSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECC----T----------TSCHHHHHHHHHH
T ss_pred ceEEEEECC----C----------CCCHHHHHHHHHH
Confidence 468888885 4 9999998877765
No 149
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=67.89 E-value=3.4 Score=34.78 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=21.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.|..|.++|- - |+||||++.-|+..++
T Consensus 4 ~~~~~i~i~G~----~----------GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGG----T----------ASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEES----T----------TSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECC----C----------CCCHHHHHHHHHHHhC
Confidence 46788888874 4 9999999988887773
No 150
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=67.31 E-value=6.6 Score=32.63 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|.+++++|- - |.||||+..-|+..+
T Consensus 21 ~~G~~~~i~G~----~----------GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGE----P----------GTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECS----T----------TSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcC----C----------CCCHHHHHHHHHHHH
Confidence 57899999873 5 999999999999777
No 151
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=66.89 E-value=2.8 Score=35.39 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=21.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|++|.++|. - |+||||++.-|++.+
T Consensus 19 ~~~~~i~i~G~----~----------GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGV----T----------NSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEES----T----------TSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHhc
Confidence 56889999885 3 899999887776544
No 152
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=65.70 E-value=4.3 Score=35.40 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
.+.|..|.+++. . |.||||++.-|++.|
T Consensus 13 ~~~~~~i~i~G~----~----------gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGP----A----------SSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECS----S----------CSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECC----C----------CCCHHHHHHHHHHHc
Confidence 466888999885 4 999999998888766
No 153
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=64.49 E-value=4.4 Score=33.60 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.0
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|+||||++.-|++.|+
T Consensus 12 GsGKst~~~~la~~lg 27 (208)
T 3ake_A 12 ASGKSSVARRVAAALG 27 (208)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcC
Confidence 8999999999988773
No 154
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=64.05 E-value=5.7 Score=40.75 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=27.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcC-CcE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLD-KKV 115 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lg-k~~ 115 (400)
.+|.+|++||+ . |+||||++.-|++.|+ ..| ..+
T Consensus 394 q~~~~I~l~Gl----s----------GSGKSTiA~~La~~L~-~~G~~~~ 428 (573)
T 1m8p_A 394 TQGFTIFLTGY----M----------NSGKDAIARALQVTLN-QQGGRSV 428 (573)
T ss_dssp TCCEEEEEECS----T----------TSSHHHHHHHHHHHHH-HHCSSCE
T ss_pred ccceEEEeecC----C----------CCCHHHHHHHHHHHhc-ccCCceE
Confidence 45789999997 4 8999999999999995 456 443
No 155
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=63.69 E-value=4.3 Score=36.18 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.|..|.++| |. |+||||++.-|++.|+
T Consensus 25 ~~g~~I~I~G----~~----------GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 25 AIAPVITVDG----PS----------GAGKGTLCKALAESLN 52 (252)
T ss_dssp TTSCEEEEEC----CT----------TSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEC----CC----------CCCHHHHHHHHHHhcC
Confidence 4577888887 45 9999999999997763
No 156
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=63.29 E-value=5.3 Score=38.47 Aligned_cols=43 Identities=28% Similarity=0.210 Sum_probs=32.0
Q ss_pred hhhhhc---CCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 59 VLDELE---GSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 59 ~l~~~~---~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
.||++- .-+.|++++|++ |- |.||||++.-|+..+ ...|.+++
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G----~p----------GsGKTtLal~la~~~-~~~g~~vl 95 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYG----PE----------SSGKTTLTLQVIAAA-QREGKTCA 95 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEEC----ST----------TSSHHHHHHHHHHHH-HHTTCCEE
T ss_pred HHHHHhccCCccCCeEEEEEC----CC----------CCCHHHHHHHHHHHH-HHCCCeEE
Confidence 455532 246799999998 45 899999999999888 35666654
No 157
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=62.74 E-value=7.9 Score=36.87 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
.+.|.+|.+.|- - |+|||||..-|+--+. .-+.++..
T Consensus 126 ~~~g~vi~lvG~----n----------GaGKTTll~~Lag~l~-~~~g~V~l 162 (328)
T 3e70_C 126 AEKPYVIMFVGF----N----------GSGKTTTIAKLANWLK-NHGFSVVI 162 (328)
T ss_dssp SCSSEEEEEECC----T----------TSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCCCeEEEEECC----C----------CCCHHHHHHHHHHHHH-hcCCEEEE
Confidence 356899998885 4 9999999999998884 55665544
No 158
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=62.45 E-value=4.1 Score=37.33 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.2
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
|+.|.++|. . |.||||++.-|++.|+
T Consensus 48 g~~i~l~G~----~----------GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGM----M----------GSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECS----T----------TSCHHHHHHHHHHHHT
T ss_pred CCEEEEECC----C----------CCCHHHHHHHHHHhcC
Confidence 778888886 4 9999999999998874
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=62.23 E-value=3.2 Score=34.12 Aligned_cols=16 Identities=44% Similarity=0.603 Sum_probs=14.4
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++.-|++.|+
T Consensus 14 GsGKsTla~~La~~l~ 29 (175)
T 1via_A 14 GSGKSTLARALAKDLD 29 (175)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC
Confidence 9999999999998874
No 160
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=61.81 E-value=4.2 Score=34.06 Aligned_cols=14 Identities=43% Similarity=0.458 Sum_probs=12.0
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.||||++.-|++ +
T Consensus 11 GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 11 GCGKSTVAQMFRE-L 24 (204)
T ss_dssp TSSHHHHHHHHHH-T
T ss_pred CcCHHHHHHHHHH-C
Confidence 9999998887776 5
No 161
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=61.52 E-value=4.2 Score=35.89 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=20.2
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
..|.|||. . |+||||++.-|++.|+
T Consensus 23 ~iI~I~G~----~----------GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGG----T----------ASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECS----T----------TSSHHHHHHHHHHHTT
T ss_pred EEEEEECC----C----------CCCHHHHHHHHHHHhh
Confidence 46777774 4 8999999999998885
No 162
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=60.42 E-value=4.5 Score=41.31 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=24.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
++|..|++|+. . |+||||++..|++.|+
T Consensus 393 ~~~~~I~l~Gl----s----------GsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNS----L----------TVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTT----C----------CSCHHHHHHHHHHHHT
T ss_pred ccceEEEeccc----C----------CCCHHHHHHHHHHHHH
Confidence 36778999987 5 9999999999999995
No 163
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=60.36 E-value=4.1 Score=33.76 Aligned_cols=15 Identities=53% Similarity=0.592 Sum_probs=12.6
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.||||+..-|+..+
T Consensus 12 GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 12 GVGKSTTCKRLAAQL 26 (189)
T ss_dssp TSSHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHhccc
Confidence 999999999887643
No 164
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=60.24 E-value=5.4 Score=33.92 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|..|.+.| |. |.||||+...|+..+
T Consensus 31 ~~Ge~v~L~G----~n----------GaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNG----DL----------GAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEEC----ST----------TSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEC----CC----------CCCHHHHHHHHHHhC
Confidence 5688888877 56 999999999998877
No 165
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=60.17 E-value=1.8 Score=39.96 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=70.9
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEEecCCCCCC------ccccccCcCCCCce-----------eeecCcccccccchh
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGP------TFGIRGGAAGGGYS-----------QVIPMDEFNLHLTGD 155 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP------~FGiKGGAaGGGys-----------QviPmeeiNLHfTGD 155 (400)
|.|||+++..+++... +.+.. ++.+.-.++-. .||...|+--|-.. -++=+|||+. +..
T Consensus 35 GtGKt~lAr~i~~~~~-~~~~~-~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~-l~~- 110 (304)
T 1ojl_A 35 GTGKELVARALHACSA-RSDRP-LVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD-ISP- 110 (304)
T ss_dssp TSCHHHHHHHHHHHSS-CSSSC-CCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTT-CCH-
T ss_pred CchHHHHHHHHHHhCc-ccCCC-eEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEecccc-CCH-
Confidence 9999999999988773 43433 33343333321 25544333221110 1344666652 111
Q ss_pred hhHHHHHHhHHHHHHHhhhhc-----------------ccc---------cChhHhhhhc------CCCCCcCCcchhHH
Q 044054 156 IHAITAANNLLAAAIDTRIFH-----------------EAS---------QSDKALFNRL------CPPNKEGERSFSNI 203 (400)
Q Consensus 156 ~HAItaA~NLlaA~idn~i~~-----------------~~~---------~~~~~l~~rl------~p~~~~g~r~f~~~ 203 (400)
...+.|...+++.-|. .|. .-++.||.|| +|+.++-+......
T Consensus 111 -----~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l 185 (304)
T 1ojl_A 111 -----LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLL 185 (304)
T ss_dssp -----HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHH
T ss_pred -----HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHH
Confidence 2344445556654321 111 0135688887 67665433333333
Q ss_pred HHHHHHHhcCC-CCCCCCCCHHHhhhhccCCCCCCceeeecccccCcccccce
Q 044054 204 MFRRLRKLGIS-KTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKI 255 (400)
Q Consensus 204 ~~~rl~klgi~-~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I 255 (400)
....|+++.-. ...+..++++-+..+... .|+. |-|.|+++
T Consensus 186 ~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~-------~wpG----nvReL~~~ 227 (304)
T 1ojl_A 186 ADHFLRRFAERNRKVVKGFTPQAMDLLIHY-------DWPG----NIRELENA 227 (304)
T ss_dssp HHHHHHHHHHHTTCCCCCBCHHHHHHHHHC-------CCSS----HHHHHHHH
T ss_pred HHHHHHHHHHHhccCccCCCHHHHHHHHcC-------CCCC----CHHHHHHH
Confidence 33334433221 123456888888877654 3654 56666664
No 166
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=59.63 E-value=6 Score=35.06 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=22.4
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
..++.|+++|. - |.||||++.-|++.+
T Consensus 27 ~~~~~I~l~G~----~----------GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGA----P----------GSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECC----T----------TSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECC----C----------CCCHHHHHHHHHHHh
Confidence 35788999985 4 899999999998877
No 167
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=58.86 E-value=7.4 Score=38.22 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=30.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
-++|-|+||+ |.- .-||||||..|.++| ++.|.++..
T Consensus 150 v~~k~i~v~G---TD~----------~VGK~~ts~~L~~~l-~~~G~~a~~ 186 (349)
T 2obn_A 150 LPCRRVLTVG---TDM----------AIGKMSTSLELHWAA-KLRGWRSKF 186 (349)
T ss_dssp CSSEEEEEEE---SSS----------SSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ecceEEEEcC---CCc----------cccceeHHHHHHHHH-HhcCCcEEE
Confidence 3578899998 455 679999999999999 578998765
No 168
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=58.81 E-value=6 Score=34.32 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=19.0
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEEe----cCC
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTCL----RQP 122 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~l----RqP 122 (400)
|.||||.+.-|++.|+ . .+... |+|
T Consensus 10 GsGKsT~a~~La~~lg----~-~~i~~dd~~r~~ 38 (223)
T 2xb4_A 10 GSGKGTQGNLVKDKYS----L-AHIESGGIFREH 38 (223)
T ss_dssp TSCHHHHHHHHHHHHT----C-EEEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC----C-eEEchHHHHHHH
Confidence 8999999999988773 2 34444 886
No 169
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=57.90 E-value=10 Score=36.33 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP 122 (400)
+.|+.|+|+|- - |+||||+.--|+.-+. .-+...+..+-+|
T Consensus 134 ~~g~~i~ivG~----~----------GsGKTTll~~l~~~~~-~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 134 RKMGLILVTGP----T----------GSGKSTTIASMIDYIN-QTKSYHIITIEDP 174 (372)
T ss_dssp SSSEEEEEECS----S----------SSSHHHHHHHHHHHHH-HHSCCEEEEEESS
T ss_pred cCCCEEEEECC----C----------CCCHHHHHHHHHhhcC-cCCCcEEEEeccc
Confidence 46888888873 3 9999999999998884 4334445555554
No 170
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=57.87 E-value=5.5 Score=34.81 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=19.9
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
.-..|.+||. - |+||||++.-|++.+
T Consensus 11 ~~~iIgltG~----~----------GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGK----I----------GTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECS----T----------TSSHHHHHHHHHHHH
T ss_pred cceEEEEECC----C----------CCCHHHHHHHHHHhc
Confidence 3456777775 3 899999998888765
No 171
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=57.66 E-value=6.9 Score=35.74 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=26.3
Q ss_pred hhhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 59 VLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 59 ~l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+|+.+. -+.|.+|+|+| |- |+||||+..-|+.-+.
T Consensus 16 vl~~i~-i~~g~~v~i~G----p~----------GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTG----PT----------GSGKSTTIASMIDYIN 50 (261)
T ss_dssp HHHHGG-GCSSEEEEEEC----ST----------TCSHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEEC----CC----------CccHHHHHHHHHHhCC
Confidence 344443 35688999988 34 9999999998888773
No 172
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=57.31 E-value=5.1 Score=39.00 Aligned_cols=25 Identities=12% Similarity=0.360 Sum_probs=21.0
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
++|+|+|- . |.||||++.-|++.|+
T Consensus 8 ~lI~I~Gp----t----------gSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGP----T----------ASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECS----T----------TSSHHHHHHHHHHHTT
T ss_pred ceEEEECC----C----------cCcHHHHHHHHHHHcC
Confidence 57888874 4 8999999999999884
No 173
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=57.21 E-value=4.9 Score=39.25 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=21.5
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.++|+|+| |. |.||||+++.|++.++
T Consensus 3 ~~~i~i~G----pt----------gsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVG----PT----------AVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEEC----CT----------TSCHHHHHHHHHHTTT
T ss_pred CcEEEEEC----CC----------cCCHHHHHHHHHHhCc
Confidence 46788876 44 8999999999999884
No 174
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=57.04 E-value=5.7 Score=38.63 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=22.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+..++|+|+| |. |.||||+++-|++.++
T Consensus 8 ~~~~~i~i~G----pt----------gsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMG----PT----------ASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEEC----CT----------TSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEEC----CC----------ccCHHHHHHHHHHhCC
Confidence 4467888887 34 8999999999999884
No 175
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=56.68 E-value=9.2 Score=30.10 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
...+-|+++| |. |.||||++..+++.+.
T Consensus 41 ~~~~~~ll~G----~~----------G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIG----EP----------GVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEEC----CT----------TSCHHHHHHHHHHHHH
T ss_pred CCCCceEEEC----CC----------CCCHHHHHHHHHHHHH
Confidence 3456778886 45 9999999999999984
No 176
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=56.64 E-value=13 Score=34.87 Aligned_cols=36 Identities=36% Similarity=0.317 Sum_probs=26.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
.+|..|.+.| |- |.||||+..-|+--+. .-+.++..
T Consensus 100 ~~g~vi~lvG----~n----------GsGKTTll~~Lagll~-~~~g~V~l 135 (304)
T 1rj9_A 100 PKGRVVLVVG----VN----------GVGKTTTIAKLGRYYQ-NLGKKVMF 135 (304)
T ss_dssp CSSSEEEEEC----ST----------TSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCCeEEEEEC----CC----------CCcHHHHHHHHHHHHH-hcCCEEEE
Confidence 3578888887 35 9999999999998884 44555443
No 177
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=56.39 E-value=9.4 Score=35.44 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=30.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCcccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGI 130 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~FGi 130 (400)
.+|.+.++||- - |.||||..++++.-+ ..-|+++ .+=+|....-+|-
T Consensus 26 ~~G~I~vitG~----M----------~sGKTT~Llr~~~r~-~~~g~kv--li~kp~~D~R~~~ 72 (219)
T 3e2i_A 26 HSGWIECITGS----M----------FSGKSEELIRRLRRG-IYAKQKV--VVFKPAIDDRYHK 72 (219)
T ss_dssp -CCEEEEEEEC----T----------TSCHHHHHHHHHHHH-HHTTCCE--EEEEEC-------
T ss_pred CCceEEEEECC----C----------CCCHHHHHHHHHHHH-HHcCCce--EEEEeccCCcchh
Confidence 56999999982 3 899999999998777 3557775 4567777655553
No 178
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=56.12 E-value=4.9 Score=35.05 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=24.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
++|++|.+.|.+ |+||||+.--|+. ++.+ +...++|.
T Consensus 18 ~~g~~i~i~G~~--------------GsGKSTl~~~L~~-----~~g~-v~~~~~~~ 54 (230)
T 2vp4_A 18 TQPFTVLIEGNI--------------GSGKTTYLNHFEK-----YKND-ICLLTEPV 54 (230)
T ss_dssp CCCEEEEEECST--------------TSCHHHHHHTTGG-----GTTT-EEEECCTH
T ss_pred CCceEEEEECCC--------------CCCHHHHHHHHHh-----ccCC-eEEEecCH
Confidence 569999999874 9999996544432 2333 45567763
No 179
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=55.98 E-value=13 Score=36.36 Aligned_cols=37 Identities=24% Similarity=-0.078 Sum_probs=29.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
-++|-|+||+. -- .-|||||+..|.++| ...|.++..
T Consensus 167 i~~~ri~v~GT---Dt----------~vGKt~t~~~L~~~l-~~~G~~v~~ 203 (350)
T 2g0t_A 167 KKIKVVGVFGT---DC----------VVGKRTTAVQLWERA-LEKGIKAGF 203 (350)
T ss_dssp CCSEEEEEEES---SS----------SSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ecceEEEEecC---CC----------CccCccHHHHHHHHH-HhcCCeEEE
Confidence 35788999983 44 579999999999999 578998754
No 180
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=55.33 E-value=16 Score=30.35 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=24.7
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCc
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKK 114 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~ 114 (400)
.|+.+++.| |- |.||||+...++..+. .-|++
T Consensus 35 ~g~~~~l~G----~~----------G~GKTtL~~~i~~~~~-~~g~~ 66 (149)
T 2kjq_A 35 HGQFIYVWG----EE----------GAGKSHLLQAWVAQAL-EAGKN 66 (149)
T ss_dssp CCSEEEEES----SS----------TTTTCHHHHHHHHHHH-TTTCC
T ss_pred CCCEEEEEC----CC----------CCCHHHHHHHHHHHHH-hcCCc
Confidence 578788776 34 9999999999999884 34544
No 181
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=54.85 E-value=7.7 Score=31.98 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=17.6
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHH
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQ 105 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~ 105 (400)
.++|.+|+. . |+||||++.-|++
T Consensus 8 ~~~I~i~G~----~----------GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGN----I----------GSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEEC----T----------TSCHHHHHHHHHH
T ss_pred ceEEEEECC----C----------CCCHHHHHHHHHH
Confidence 457888875 4 9999998877665
No 182
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=54.84 E-value=10 Score=37.36 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP 122 (400)
..|.+|+|+|- - |+|||||...|+.-+. .- ...+..+=+|
T Consensus 165 ~~ggii~I~Gp----n----------GSGKTTlL~allg~l~-~~-~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGP----T----------GSGKSTTLYAGLQELN-SS-ERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECS----T----------TSCHHHHHHHHHHHHC-CT-TSCEEEEESS
T ss_pred hcCCeEEEECC----C----------CCCHHHHHHHHHhhcC-CC-CCEEEEeccc
Confidence 56889999984 4 9999999999998884 32 3335555555
No 183
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=54.71 E-value=11 Score=38.59 Aligned_cols=27 Identities=33% Similarity=0.294 Sum_probs=23.3
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.++++++|| |. |.|||||...+...|.
T Consensus 163 ~~~~~vi~G----~p----------GTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 163 TRRISVISG----GP----------GTGKTTTVAKLLAALI 189 (608)
T ss_dssp TBSEEEEEC----CT----------TSTHHHHHHHHHHHHH
T ss_pred cCCCEEEEe----CC----------CCCHHHHHHHHHHHHH
Confidence 368999998 56 9999999999999883
No 184
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=54.64 E-value=12 Score=34.90 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
+.|.+|.+.| |- |.|||||..-|+--+. .-+.++.
T Consensus 98 ~~g~vi~lvG----~n----------GsGKTTll~~Lag~l~-~~~g~V~ 132 (302)
T 3b9q_A 98 RKPAVIMIVG----VN----------GGGKTTSLGKLAHRLK-NEGTKVL 132 (302)
T ss_dssp SSCEEEEEEC----CT----------TSCHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCcEEEEEc----CC----------CCCHHHHHHHHHHHHH-HcCCeEE
Confidence 4588888888 45 9999999999998884 4455544
No 185
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=54.61 E-value=8.4 Score=33.81 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.|.+|-++| |- |+||||++--|+..++
T Consensus 23 ~~g~iigI~G----~~----------GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 23 MRPFLIGVSG----GT----------ASGKSTVCEKIMELLG 50 (245)
T ss_dssp CCSEEEEEEC----ST----------TSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEEC----CC----------CCCHHHHHHHHHHHhc
Confidence 4677888887 45 9999999988887663
No 186
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=54.43 E-value=4.4 Score=43.89 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVG 102 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiG 102 (400)
|.+|+|+||+. . |+||||++-.
T Consensus 34 P~~~l~viTGv----S----------GSGKSSLafd 55 (842)
T 2vf7_A 34 PRDALVVFTGV----S----------GSGKSSLAFG 55 (842)
T ss_dssp ESSSEEEEESS----T----------TSSHHHHHTT
T ss_pred cCCCEEEEECC----C----------CCCHHHHHHH
Confidence 78999999998 4 9999997643
No 187
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=54.27 E-value=5.6 Score=38.42 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=21.1
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.++|+|+|. - |.||||++.-|++.++
T Consensus 5 ~~~i~i~Gp----t----------GsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGP----T----------AAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECC----T----------TSCHHHHHHHHHHHSC
T ss_pred CcEEEEECC----C----------CCCHHHHHHHHHHHcC
Confidence 357888874 3 8999999999998873
No 188
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=54.02 E-value=9.8 Score=38.72 Aligned_cols=33 Identities=30% Similarity=0.316 Sum_probs=27.0
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKV 115 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~ 115 (400)
.+..|++||. - |+||||++.-|++.|+ ..|+++
T Consensus 371 ~~~~I~l~G~----~----------GsGKSTia~~La~~L~-~~G~~~ 403 (546)
T 2gks_A 371 QGFCVWLTGL----P----------CAGKSTIAEILATMLQ-ARGRKV 403 (546)
T ss_dssp CCEEEEEECS----T----------TSSHHHHHHHHHHHHH-HTTCCE
T ss_pred cceEEEccCC----C----------CCCHHHHHHHHHHHhh-hcCCeE
Confidence 4788999986 4 8999999999999995 556554
No 189
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=53.83 E-value=13 Score=31.30 Aligned_cols=46 Identities=24% Similarity=0.183 Sum_probs=30.3
Q ss_pred hhhhhhc--CCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 58 SVLDELE--GSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 58 ~~l~~~~--~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
.-||++= .=+.|.+++|+|- . |.||||.+.=++-......|++++.
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~----p----------G~GKT~l~l~~~~~~~~~~~~~v~~ 64 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGG----T----------GTGKTTFAAQFIYKGAEEYGEPGVF 64 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECC----T----------TSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHhhcCCCCCCeEEEEEeC----C----------CCCHHHHHHHHHHHHHHhcCCCcee
Confidence 3455532 2367999999984 4 8999999887664321344666543
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=53.72 E-value=8.3 Score=30.59 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=22.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
...+-|+++| |. |.||||++..+++.+.
T Consensus 41 ~~~~~vll~G----~~----------G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLG----DP----------GVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEES----CG----------GGCHHHHHHHHHHHHH
T ss_pred CCCCceEEEC----CC----------CCCHHHHHHHHHHHHH
Confidence 4456778887 45 9999999999999984
No 191
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=53.40 E-value=9.8 Score=37.70 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=44.2
Q ss_pred CCCCcchhcccCceeeecc-hhhhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHH----HHhhhcCC
Q 044054 39 NLKPNHYDLYGKYKAKVLL-SVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQ----ALGAFLDK 113 (400)
Q Consensus 39 GL~~dele~YG~yKAKv~l-~~l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~----aL~~~lgk 113 (400)
++++ .-..||+..-+-.+ +.|.. ...++.++|.|+|+ . |-||||++.-++. ....+...
T Consensus 123 ~~p~-~~~~~GR~~~~~~l~~~L~~-~~~~~~~vv~I~G~----g----------GvGKTtLA~~v~~~~~~~~~~~F~~ 186 (549)
T 2a5y_B 123 NVPK-QMTCYIREYHVDRVIKKLDE-MCDLDSFFLFLHGR----A----------GSGKSVIASQALSKSDQLIGINYDS 186 (549)
T ss_dssp TCBC-CCCSCCCHHHHHHHHHHHHH-HTTSSSEEEEEECS----T----------TSSHHHHHHHHHHHCSSTBTTTBSE
T ss_pred CCCC-CCccCCchHHHHHHHHHHhc-ccCCCceEEEEEcC----C----------CCCHHHHHHHHHHhhhHHHhccCCc
Confidence 4443 33337986543222 22222 11234689999998 5 9999999998885 44456677
Q ss_pred cEEEEecCCC
Q 044054 114 KVVTCLRQPL 123 (400)
Q Consensus 114 ~~~~~lRqPS 123 (400)
..++++++.+
T Consensus 187 ~~wv~vs~~~ 196 (549)
T 2a5y_B 187 IVWLKDSGTA 196 (549)
T ss_dssp EEEEECCCCS
T ss_pred EEEEEECCCC
Confidence 7888998864
No 192
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=52.98 E-value=15 Score=34.53 Aligned_cols=29 Identities=28% Similarity=0.214 Sum_probs=23.5
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.+.|.+|.+.|- - |+||||++--|+..+.
T Consensus 87 ~~~g~ivgI~G~----s----------GsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGS----V----------AVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECC----T----------TSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECC----C----------CchHHHHHHHHHhhcc
Confidence 366888888874 4 9999999998888773
No 193
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=52.50 E-value=8.8 Score=34.11 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=22.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|++++++| |- |.||||+.--|+.-+
T Consensus 14 ~~G~ii~l~G----ps----------GsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSA----PS----------GAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEEC----CT----------TSCHHHHHHHHHHHS
T ss_pred CCCcEEEEEC----CC----------CCCHHHHHHHHhccC
Confidence 6799999998 66 999999988777655
No 194
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=52.37 E-value=8.5 Score=33.93 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=20.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+..+-||++| |- |.||||++..+++.+
T Consensus 62 ~~~~~vLl~G----~~----------GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEG----PP----------HSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEEC----ST----------TSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CC----------CCcHHHHHHHHHHHh
Confidence 3445677776 45 999999999998876
No 195
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=51.74 E-value=7.7 Score=32.70 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=14.1
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++.-|++.++
T Consensus 10 GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 10 GAGKGTQAEQIIEKYE 25 (216)
T ss_dssp TSSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhC
Confidence 8999999999988773
No 196
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=51.54 E-value=14 Score=37.53 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=26.2
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
..+.+|.| |. |.|||||...+...|-+.-+++..+|
T Consensus 195 ~~~~li~G----pp----------GTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 195 RPLSLIQG----PP----------GTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp CSEEEEEC----CT----------TSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CCCeEEEC----CC----------CCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 45788887 67 99999999999988842245555443
No 197
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=50.98 E-value=9.5 Score=31.24 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=19.6
Q ss_pred EEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 71 YVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 71 ~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.+++| |- |.||||+.-.|+-+|+
T Consensus 28 ~~~i~G----~N----------GsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVG----AN----------GSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEE----CT----------TSSHHHHHHHHHHHTT
T ss_pred cEEEEC----CC----------CCCHHHHHHHHHHHHc
Confidence 777777 45 9999999988888774
No 198
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=50.77 E-value=8.1 Score=38.78 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.0
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
++|+|+| |. |.||||+++.|++.++
T Consensus 3 ~~i~i~G----pt----------gsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAG----TT----------GVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEE----CS----------SSSHHHHHHHHHHHHT
T ss_pred cEEEEEC----cc----------hhhHHHHHHHHHHHCC
Confidence 5778877 34 8999999999999985
No 199
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=50.66 E-value=9.8 Score=34.69 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=18.4
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHH
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLC 104 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~ 104 (400)
.++|.|||. - |+||||++--|+
T Consensus 75 ~~iI~I~G~----~----------GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGI----S----------GSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEEC----T----------TSCHHHHHHHHH
T ss_pred CEEEEEECC----C----------CCCHHHHHHHHH
Confidence 568889985 4 899999998887
No 200
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=50.56 E-value=8.1 Score=34.39 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=19.5
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
++|+++|. - |.||||.+.-|++.+
T Consensus 3 ~~I~l~G~----~----------GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGC----P----------GSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECC----T----------TSSHHHHHHHHHHHS
T ss_pred eEEEEECC----C----------CCCHHHHHHHHHHhC
Confidence 57888886 4 899999999888753
No 201
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=50.28 E-value=6.9 Score=37.90 Aligned_cols=27 Identities=26% Similarity=0.121 Sum_probs=21.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+..++|+++|. - |.||||++.-|++.+
T Consensus 256 ~~~~lIil~G~----p----------GSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGF----P----------GAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESC----T----------TSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECC----C----------CCCHHHHHHHHHHhc
Confidence 34678999985 4 899999988877655
No 202
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=49.61 E-value=7.5 Score=32.89 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=13.4
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.||||++.-|++.+
T Consensus 10 GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 10 GAGKGTQGERIVEKY 24 (216)
T ss_dssp TSSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHh
Confidence 899999999888766
No 203
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=48.77 E-value=13 Score=30.25 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=21.5
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.+.|+++| |. |.||||++.-+++.+.
T Consensus 45 ~~~~ll~G----~~----------G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSG----TR----------GVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEEC----ST----------TSCHHHHHHHHHHHHH
T ss_pred CeEEEEEC----CC----------CCCHHHHHHHHHHHhc
Confidence 45888887 35 9999999999998884
No 204
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=48.73 E-value=6.5 Score=32.80 Aligned_cols=22 Identities=32% Similarity=0.199 Sum_probs=17.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVG 102 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiG 102 (400)
+.|.++.+.|- - |+||||+..-
T Consensus 7 ~~gei~~l~G~----n----------GsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGS----S----------GSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECC----T----------TSCHHHHHHH
T ss_pred CCCEEEEEECC----C----------CCCHHHHHHH
Confidence 45888888884 4 9999998774
No 205
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=48.60 E-value=15 Score=35.12 Aligned_cols=34 Identities=35% Similarity=0.285 Sum_probs=24.6
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCccccccCcCCCCceeeecCccccc
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNL 150 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~FGiKGGAaGGGysQviPmeeiNL 150 (400)
|+||||++--|+..+. . .| ++|...++++|.+.+
T Consensus 102 GSGKSTl~~~L~~ll~-~----------~~-------------~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 102 AVGKSTTSRVLKALLS-R----------WP-------------DHPNVEVITTDGFLY 135 (321)
T ss_dssp TSSHHHHHHHHHHHHT-T----------ST-------------TCCCEEEEEGGGGBC
T ss_pred CCCHHHHHHHHHHHhc-c----------cC-------------CCCeEEEEeeccccc
Confidence 8999999988877662 1 12 135578899998865
No 206
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=48.51 E-value=12 Score=34.46 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=21.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
..|.+|.++|- - |+||||++--|+..+
T Consensus 78 ~~g~iigI~G~----~----------GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGS----V----------AVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEEC----T----------TSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECC----C----------CCCHHHHHHHHHHHH
Confidence 56888888874 4 999999998887666
No 207
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=48.48 E-value=9.2 Score=32.40 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=20.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQ 105 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~ 105 (400)
+.|.++.+.| |- |.||||+..-|+.
T Consensus 28 ~~G~~~~l~G----pn----------GsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTG----GT----------GTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEEC----CT----------TSSHHHHHHHHHH
T ss_pred CCCcEEEEEe----CC----------CCCHHHHHHHHHH
Confidence 5799999987 45 9999999988874
No 208
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=48.14 E-value=16 Score=36.82 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=26.4
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKV 115 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~ 115 (400)
..+|+++|. - |.||||++.-|++.|+ ..+.++
T Consensus 35 ~~lIvlvGl----p----------GSGKSTia~~La~~L~-~~~~d~ 66 (520)
T 2axn_A 35 PTVIVMVGL----P----------ARGKTYISKKLTRYLN-WIGVPT 66 (520)
T ss_dssp CEEEEEECC----T----------TSSHHHHHHHHHHHHH-HTTCCE
T ss_pred CeEEEEECC----C----------CCCHHHHHHHHHHHHh-hcCCCe
Confidence 468888887 2 7999999999999995 667665
No 209
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=47.78 E-value=17 Score=35.19 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=27.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
+.|.+|.+.| |- |.|||||..-|+--+. .-+.++..
T Consensus 155 ~~g~vi~lvG----~n----------GsGKTTll~~Lag~l~-~~~G~V~l 190 (359)
T 2og2_A 155 RKPAVIMIVG----VN----------GGGKTTSLGKLAHRLK-NEGTKVLM 190 (359)
T ss_dssp SSSEEEEEEC----CT----------TSCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCCeEEEEEc----CC----------CChHHHHHHHHHhhcc-ccCCEEEE
Confidence 4588888888 45 9999999999998884 44555443
No 210
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=47.69 E-value=10 Score=33.32 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=26.0
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEEecCCCCCC
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGP 126 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP 126 (400)
|.||||+.-.|.+.+...+....-.+=|.|--|-
T Consensus 11 G~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE 44 (186)
T 1ex7_A 11 GTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44 (186)
T ss_dssp TSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC
Confidence 9999999988887763346666667889887773
No 211
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=47.30 E-value=19 Score=30.16 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=20.3
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.|+|+| +. |.||||+...|+..+.
T Consensus 31 ~~i~i~G----~~----------g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMG----AI----------GSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEE----CT----------TSCHHHHHHHHHHHHT
T ss_pred eEEEEEc----CC----------CCCHHHHHHHHHHHhc
Confidence 4566666 56 9999999999999884
No 212
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=47.06 E-value=12 Score=31.06 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHH
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQ 105 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~ 105 (400)
=+.|.+++++| |- |.||||++.-|+.
T Consensus 17 i~~G~~~~i~G----~~----------GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYG----PY----------ASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEEC----ST----------TSSHHHHHHHHHH
T ss_pred CcCCEEEEEEC----CC----------CCCHHHHHHHHHH
Confidence 36799999987 45 9999999888776
No 213
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=46.98 E-value=10 Score=32.03 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=21.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQA 106 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~a 106 (400)
+.|.++++.| |- |.||||++.-|+-.
T Consensus 22 ~~G~~~~i~G----~~----------GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFG----EF----------RTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEEC----CT----------TSSHHHHHHHHHHH
T ss_pred cCCeEEEEEC----CC----------CCcHHHHHHHHHHH
Confidence 5799999987 55 99999999888764
No 214
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=46.93 E-value=14 Score=34.43 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=22.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.+.+|.|+|- - |+||||++.-|+..|.
T Consensus 29 ~~~~ii~I~G~----s----------GsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGP----Q----------GSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECC----T----------TSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHHhh
Confidence 45678888873 4 9999999999999995
No 215
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=46.82 E-value=28 Score=31.07 Aligned_cols=28 Identities=29% Similarity=0.238 Sum_probs=23.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.|.+++|.|- - |.||||+..-|+-.+.
T Consensus 33 ~~G~~~~i~G~----~----------G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 33 RGGEVIMVTSG----S----------GMGKSTFVRQQALQWG 60 (296)
T ss_dssp CTTCEEEEEES----T----------TSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeC----C----------CCCHHHHHHHHHHHHH
Confidence 67999999984 4 9999999988887773
No 216
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=46.47 E-value=20 Score=34.72 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=38.6
Q ss_pred hhhhhhc---CCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCc
Q 044054 58 SVLDELE---GSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPT 127 (400)
Q Consensus 58 ~~l~~~~---~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~ 127 (400)
..||++- .-+.|++|+|++ |. |.||||++.-++..+ ...|.+++..==+.+.-|.
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G----~p----------GsGKTtlal~la~~~-~~~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYG----PE----------SGGKTTLALAIVAQA-QKAGGTCAFIDAEHALDPV 117 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEE----ST----------TSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCHH
T ss_pred HHHHHHhCCCCccCCcEEEEEc----CC----------CCChHHHHHHHHHHH-HHCCCeEEEEECCCChhHH
Confidence 3455532 336799999986 45 899999999999888 4567776655555555554
No 217
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=46.47 E-value=7 Score=37.82 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=34.9
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCC
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS 123 (400)
...+.+|++-|+ - |+||||+.--|.+.|+ -.|.+ +.++++|+
T Consensus 83 ~~~~vlIvfEG~----D----------gAGKgt~Ik~L~e~Ld-prg~~-V~~~~~Pt 124 (304)
T 3czq_A 83 TGKRVMAVFEGR----D----------AAGKGGAIHATTANMN-PRSAR-VVALTKPT 124 (304)
T ss_dssp HCCCEEEEEEES----T----------TSSHHHHHHHHHTTSC-TTTEE-EEECCSCC
T ss_pred cCCCeEEEEeCC----C----------CCCHHHHHHHHHHHhc-ccCCe-EEEeCCcC
Confidence 346899999998 3 8999999999999995 55776 56789998
No 218
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=45.94 E-value=10 Score=34.40 Aligned_cols=48 Identities=31% Similarity=0.541 Sum_probs=31.5
Q ss_pred cccCceeeecchhhhh-hc-CCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 47 LYGKYKAKVLLSVLDE-LE-GSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 47 ~YG~yKAKv~l~~l~~-~~-~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.+|...++-.+..+.+ +. .+..++-||++| |- |.|||+++..+++.++
T Consensus 46 ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~G----pp----------GtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAG----QP----------GTGKTAIAMGMAQALG 95 (368)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTTCEEEEEE----ST----------TSSHHHHHHHHHHHHC
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCCCEEEEEC----CC----------CCCHHHHHHHHHHHhc
Confidence 4566555544333322 22 223467889887 45 9999999999999984
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=45.92 E-value=14 Score=30.71 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=23.5
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCc
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKK 114 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~ 114 (400)
+-|+++| |. |.||||++..++..+. .-|..
T Consensus 55 ~~~~l~G----~~----------GtGKT~la~~i~~~~~-~~~~~ 84 (202)
T 2w58_A 55 KGLYLHG----SF----------GVGKTYLLAAIANELA-KRNVS 84 (202)
T ss_dssp CEEEEEC----ST----------TSSHHHHHHHHHHHHH-TTTCC
T ss_pred CeEEEEC----CC----------CCCHHHHHHHHHHHHH-HcCCe
Confidence 6788876 55 9999999999999984 44544
No 220
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=45.59 E-value=12 Score=36.30 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=25.4
Q ss_pred EEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 71 YVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 71 ~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
.++|+| |+ |.||||+...++..|. ..|++.+
T Consensus 47 ~~li~G----~a----------GTGKT~ll~~~~~~l~-~~~~~~i 77 (459)
T 3upu_A 47 HVTING----PA----------GTGATTLTKFIIEALI-STGETGI 77 (459)
T ss_dssp EEEEEC----CT----------TSCHHHHHHHHHHHHH-HTTCCCE
T ss_pred EEEEEe----CC----------CCCHHHHHHHHHHHHH-hcCCceE
Confidence 888888 57 9999999999999994 6676333
No 221
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=45.55 E-value=18 Score=37.52 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=33.1
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP 122 (400)
|||+||+= |-. +-|||+++-+||..| ++.|.++..-=-||
T Consensus 4 ~~i~v~gg--~~s----------~~gk~~~~~~l~~~l-~~~g~~v~~~k~~p 43 (545)
T 1s1m_A 4 NYIFVTGG--VVS----------SLGKGIAAASLAAIL-EARGLNVTIMKLDP 43 (545)
T ss_dssp EEEEEEEC--SSS----------CSCHHHHHHHHHHHH-HTTTCCEEEEEEEC
T ss_pred eEEEEeCC--ccc----------CcchHHHHHHHHHHH-HhCCceeeeeeccc
Confidence 89999943 445 789999999999999 68899987766664
No 222
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=45.02 E-value=8 Score=42.28 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGL 103 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL 103 (400)
|++|+|+|||. . |+|||+++-.-
T Consensus 22 p~~~l~v~tG~----S----------GSGKSsLafdt 44 (916)
T 3pih_A 22 PKNRLVVITGV----S----------GSGKSSLAMDT 44 (916)
T ss_dssp ETTSEEEEEES----T----------TSSSHHHHTTT
T ss_pred CCCcEEEEECC----C----------CCcHHHHHHHH
Confidence 78999999998 4 99999977553
No 223
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=44.83 E-value=22 Score=31.71 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|.++++.|- - |.||||++.-++..+
T Consensus 28 ~~G~i~~i~G~----~----------GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSP----G----------GAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEES----T----------TSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcC----C----------CCCHHHHHHHHHHHH
Confidence 46899999884 4 999999999888766
No 224
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=44.83 E-value=22 Score=33.31 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=33.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFG 129 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~FG 129 (400)
..|++.+.|| |- |.||||-.++++.-. ..-|+++++ =+|+.+.-+|
T Consensus 17 ~~g~l~v~~G----~M----------gsGKTT~lL~~~~r~-~~~g~kvli--~kp~~D~Ryg 62 (234)
T 2orv_A 17 TRGQIQVILG----PM----------FSGKSTELMRRVRRF-QIAQYKCLV--IKYAKDTRYS 62 (234)
T ss_dssp -CCEEEEEEC----CT----------TSCHHHHHHHHHHHH-HTTTCCEEE--EEETTCCCC-
T ss_pred CceEEEEEEC----CC----------CCcHHHHHHHHHHHH-HHCCCeEEE--EeecCCccch
Confidence 4588888886 45 899999999998877 356777653 3588876655
No 225
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=43.75 E-value=22 Score=34.56 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=48.1
Q ss_pred HHHHHHHcCCCCcchhcccCc-----eeeecc--hhhhhh-c--CCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhH
Q 044054 31 ISEIAQELNLKPNHYDLYGKY-----KAKVLL--SVLDEL-E--GSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTT 100 (400)
Q Consensus 31 I~eiA~~lGL~~dele~YG~y-----KAKv~l--~~l~~~-~--~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTtt 100 (400)
|.+|-+++|-.. +.+.+.. ..+++. ..||++ . .=+.|.+++|.+ |. |.||||++
T Consensus 15 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~G----pp----------GsGKSTLa 78 (356)
T 3hr8_A 15 LKRIEENFGKGS--IMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFG----QE----------SSGKTTLA 78 (356)
T ss_dssp HHHHHHHHCTTS--SCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEE----ST----------TSSHHHHH
T ss_pred HHHHHHHhCCCC--ceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEEC----CC----------CCCHHHHH
Confidence 667777776532 2222221 123332 356663 2 336799999998 46 99999999
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCCCC
Q 044054 101 VGLCQALGAFLDKKVVTCLRQPLQGP 126 (400)
Q Consensus 101 iGL~~aL~~~lgk~~~~~lRqPS~GP 126 (400)
.-++..+ ...|.+++-.=-+.+.-+
T Consensus 79 l~la~~~-~~~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 79 LHAIAEA-QKMGGVAAFIDAEHALDP 103 (356)
T ss_dssp HHHHHHH-HHTTCCEEEEESSCCCCH
T ss_pred HHHHHHH-HhcCCeEEEEecccccch
Confidence 9999888 456666544333444443
No 226
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=43.69 E-value=19 Score=34.98 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=26.6
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
++.|-|||. -||||||-=|++.| ...|+++.
T Consensus 112 ~~~IaVTGT----------------nGKTTTt~ml~~iL-~~~g~~~~ 142 (451)
T 3lk7_A 112 SQLIGITGS----------------NGKTTTTTMIAEVL-NAGGQRGL 142 (451)
T ss_dssp SEEEEEECS----------------SCHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCEEEEECC----------------CCHHHHHHHHHHHH-HhcCCCEE
Confidence 589999986 69999999999999 47888764
No 227
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=43.67 E-value=7.9 Score=42.94 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVG 102 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiG 102 (400)
|++|+|+|||. . |+|||+++-.
T Consensus 44 P~~~lvv~tG~----S----------GSGKSSLafd 65 (993)
T 2ygr_A 44 PRDALIVFTGL----S----------GSGKSSLAFD 65 (993)
T ss_dssp ESSSEEEEEES----T----------TSSHHHHHTT
T ss_pred cCCCEEEEECC----C----------CCcHHHHHHH
Confidence 78999999998 4 9999997654
No 228
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=42.89 E-value=18 Score=34.54 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=35.2
Q ss_pred hhhhh-c--CCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCc
Q 044054 59 VLDEL-E--GSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPT 127 (400)
Q Consensus 59 ~l~~~-~--~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~ 127 (400)
-||++ . .-+.|.++++.| |- |.||||++.-++..+ ..-|.+++..=-|.+.-|.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G----~p----------GsGKTtLal~la~~~-~~~g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYG----PE----------SSGKTTVALHAVANA-QAAGGIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEE----ST----------TSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCHH
T ss_pred HHHHHhccCCccCCeEEEEEC----CC----------CCCHHHHHHHHHHHH-HhCCCeEEEEECCCCcCHH
Confidence 45553 2 236799999997 34 899999999998777 3556665433333344443
No 229
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=42.47 E-value=12 Score=32.57 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=20.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|+.+.+.| |- |+||||+.--|+.-+
T Consensus 21 ~~G~~~~lvG----ps----------GsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICG----PS----------GVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEEC----ST----------TSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEC----CC----------CCCHHHHHHHHHhhC
Confidence 4588888776 56 999999887776544
No 230
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=42.12 E-value=14 Score=29.41 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=20.0
Q ss_pred HHHccCCCCCHHHHHHHcCCCCcch
Q 044054 21 DIANSVEPLHISEIAQELNLKPNHY 45 (400)
Q Consensus 21 eIa~~~~~~pI~eiA~~lGL~~del 45 (400)
+--.+.|.-+++++|.++||.-++.
T Consensus 14 ~yIk~~Kvv~LedLA~~F~l~t~~~ 38 (72)
T 1wi9_A 14 NYIKKSKVVLLEDLAFQMGLRTQDA 38 (72)
T ss_dssp HHHHHCSEECHHHHHHHHCSCHHHH
T ss_pred HHHHHcCeeeHHHHHHHhCCChHHH
Confidence 3345667789999999999998775
No 231
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=42.06 E-value=11 Score=31.86 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=13.2
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|+||||++--|+..+
T Consensus 15 GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 15 GAGKGTLCKAMAEAL 29 (227)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999998888766
No 232
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=41.97 E-value=22 Score=36.91 Aligned_cols=41 Identities=22% Similarity=0.131 Sum_probs=33.9
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP 122 (400)
-|||+||+= |-. +-|||+++-+||.-| ++.|.++..-=-||
T Consensus 12 ~~~i~v~gg--~~s----------~~gk~~~~~~~~~~l-~~~g~~v~~~k~~p 52 (550)
T 1vco_A 12 RKYVFITGG--VVS----------SLGKGILTSSLGALL-RARGYRVTAIKIDP 52 (550)
T ss_dssp CEEEEEEEC--SSS----------CSCHHHHHHHHHHHH-HTTTCCEEEEEEEC
T ss_pred eeEEEEeCC--ccc----------CcchHHHHHHHHHHH-HhCCceeeEeeccc
Confidence 589999943 344 789999999999999 68899988766665
No 233
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=41.97 E-value=25 Score=32.47 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHcCCCCcchhcccCceeeec--chhhhhh-cCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHH
Q 044054 27 EPLHISEIAQELNLKPNHYDLYGKYKAKVL--LSVLDEL-EGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGL 103 (400)
Q Consensus 27 ~~~pI~eiA~~lGL~~dele~YG~yKAKv~--l~~l~~~-~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL 103 (400)
...++.++..+. -++++..+.....++ +..||++ ..-+.|.+++|+|- - |.||||.+.-+
T Consensus 26 ~~~~~~~~~~~~---~~~~~~~~~~~~~i~TG~~~LD~~lgGl~~G~l~li~G~----p----------G~GKTtl~l~i 88 (315)
T 3bh0_A 26 DDGSIDEALVTV---YEEIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAAR----P----------SMGKTAFALKQ 88 (315)
T ss_dssp CCCCCHHHHHHH---HHHHHTCSSSCCSBCCSCHHHHHHHSSBCTTCEEEEECC----T----------TSSHHHHHHHH
T ss_pred CcccHHHHHHHH---HHHHHhccCCCCCccCChHHHHhhcCCCCCCcEEEEEeC----C----------CCCHHHHHHHH
Confidence 466788777654 133333211122333 3456654 33478999999985 3 89999999888
Q ss_pred HHHH
Q 044054 104 CQAL 107 (400)
Q Consensus 104 ~~aL 107 (400)
+..+
T Consensus 89 a~~~ 92 (315)
T 3bh0_A 89 AKNM 92 (315)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8666
No 234
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=41.64 E-value=9.1 Score=42.43 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVG 102 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiG 102 (400)
|++|+|+|||. . |+|||+++-.
T Consensus 42 P~~~lvv~tG~----S----------GSGKSSLafd 63 (972)
T 2r6f_A 42 PRGKLVVLTGL----S----------GSGKSSLAFD 63 (972)
T ss_dssp ETTSEEEEEES----T----------TSSHHHHHTT
T ss_pred cCCcEEEEECC----C----------CCCHHHHHHH
Confidence 78999999998 4 9999997644
No 235
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=40.69 E-value=25 Score=37.51 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=25.7
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
+.+.+|+| |. |.|||||...+...|-..-+++..+
T Consensus 371 ~~~~lI~G----pp----------GTGKT~ti~~~i~~l~~~~~~~ilv 405 (800)
T 2wjy_A 371 RPLSLIQG----PP----------GTGKTVTSATIVYHLARQGNGPVLV 405 (800)
T ss_dssp SSEEEEEC----CT----------TSCHHHHHHHHHHHHHTTCSSCEEE
T ss_pred CCeEEEEc----CC----------CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 45788887 67 9999999999998884223555444
No 236
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=40.27 E-value=5.9 Score=40.10 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=28.2
Q ss_pred hcccCceeeecchhhhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 46 DLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 46 e~YG~yKAKv~l~~l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.||...++-.++. .+ ..|+-|+++| |- |.||||++..|+..+.
T Consensus 42 ~i~G~~~~l~~l~~--~i---~~g~~vll~G----p~----------GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 42 QVIGQEHAVEVIKT--AA---NQKRHVLLIG----EP----------GTGKSMLGQAMAELLP 85 (604)
T ss_dssp HCCSCHHHHHHHHH--HH---HTTCCEEEEC----CT----------TSSHHHHHHHHHHTSC
T ss_pred eEECchhhHhhccc--cc---cCCCEEEEEe----CC----------CCCHHHHHHHHhccCC
Confidence 35676555422221 12 2356677776 45 9999999999998873
No 237
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=39.83 E-value=17 Score=36.97 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=19.8
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
|.|||+|.+-+...|- +-|++..+|
T Consensus 215 GTGKT~ti~~~I~~l~-~~~~~ILv~ 239 (646)
T 4b3f_X 215 GTGKTTTVVEIILQAV-KQGLKVLCC 239 (646)
T ss_dssp TSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 9999999998888773 567776655
No 238
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=39.45 E-value=11 Score=32.19 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=13.7
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.||||.+.-|++.+
T Consensus 10 GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 10 VAGKGTQAQFIMEKY 24 (214)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 899999999998877
No 239
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=38.92 E-value=38 Score=30.21 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=23.3
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
..+..|+++|- . |.||||++.-+++.+.
T Consensus 43 ~~~~~vli~G~----~----------G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGL----T----------GTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEEC----T----------TSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECC----C----------CCCHHHHHHHHHHHHH
Confidence 45778888884 4 9999999999998884
No 240
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=38.49 E-value=12 Score=38.36 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=24.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
+.|..|.++|. - |+||||+..-|+..|+
T Consensus 367 ~~G~iI~LiG~----s----------GSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGL----S----------GAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEES----S----------CHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECC----C----------CChHHHHHHHHHHhhc
Confidence 36889999986 4 9999999999999884
No 241
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=38.40 E-value=9 Score=32.16 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=11.0
Q ss_pred CCccchhHHHHHH
Q 044054 93 GEGKSTTTVGLCQ 105 (400)
Q Consensus 93 GEGKTTttiGL~~ 105 (400)
|+||||++.-|+.
T Consensus 12 GsGKST~~~~La~ 24 (206)
T 1jjv_A 12 GSGKTTIANLFTD 24 (206)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 9999998877765
No 242
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=38.37 E-value=11 Score=32.73 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=14.7
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|+||||++.-|++.|+
T Consensus 16 GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 16 GSGGHLVAKKLAEHYN 31 (201)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999999884
No 243
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=38.20 E-value=29 Score=35.78 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=27.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
+.|.+|.+.|- - |.||||+..-|+--+. .-+.++..
T Consensus 291 ~~GeVI~LVGp----N----------GSGKTTLl~~LAgll~-~~~G~V~l 326 (503)
T 2yhs_A 291 KAPFVILMVGV----N----------GVGKTTTIGKLARQFE-QQGKSVML 326 (503)
T ss_dssp CTTEEEEEECC----T----------TSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred cCCeEEEEECC----C----------cccHHHHHHHHHHHhh-hcCCeEEE
Confidence 45888888875 4 9999999999988773 44555544
No 244
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=38.12 E-value=26 Score=31.00 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHcCCCCcchhcccCceeeecch-hhhhh-----------cCCCCCcEEEEeccCCCCCCCCCCCcCcCCC
Q 044054 27 EPLHISEIAQELNLKPNHYDLYGKYKAKVLLS-VLDEL-----------EGSADGYYVVVGEITRTPLGEGEITQYPLGE 94 (400)
Q Consensus 27 ~~~pI~eiA~~lGL~~dele~YG~yKAKv~l~-~l~~~-----------~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GE 94 (400)
.+..+.++-+++. =+.+|...+|-.+. .+..+ ...+.++-||++| |- |.
T Consensus 18 ~~~~~~~~~~~l~-----~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G----~~----------Gt 78 (309)
T 3syl_A 18 EGSGAKEVLEELD-----RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTG----NP----------GT 78 (309)
T ss_dssp HHTTHHHHHHHHH-----HHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEE----CT----------TS
T ss_pred ccccHHHHHHHHH-----HHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEEC----CC----------CC
Confidence 3445666665541 03577766664443 11111 1123455677776 45 99
Q ss_pred ccchhHHHHHHHHhhhcC
Q 044054 95 GKSTTTVGLCQALGAFLD 112 (400)
Q Consensus 95 GKTTttiGL~~aL~~~lg 112 (400)
|||+++..+++.++ ..+
T Consensus 79 GKT~la~~la~~l~-~~~ 95 (309)
T 3syl_A 79 GKTTVALKMAGLLH-RLG 95 (309)
T ss_dssp SHHHHHHHHHHHHH-HTT
T ss_pred CHHHHHHHHHHHHH-hcC
Confidence 99999999999994 444
No 245
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=38.06 E-value=33 Score=33.29 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=28.0
Q ss_pred hhhhhhc-CCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 58 SVLDELE-GSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 58 ~~l~~~~-~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
..|+++- .-+.|.+++|+|- - |.||||.+.-++..+.
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~----p----------G~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAAR----P----------SVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECC----T----------TSCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECC----C----------CCCHHHHHHHHHHHHH
Confidence 4455532 3467999999984 3 8999999999988773
No 246
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=37.69 E-value=31 Score=33.05 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=27.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
.+.|.|-|||. -|||||+-=|++.| ...|.++.
T Consensus 47 ~~~~vI~VTGT----------------nGKtTT~~~l~~iL-~~~G~~~g 79 (422)
T 1w78_A 47 PAPFVFTVAGT----------------NGKGTTCRTLESIL-MAAGYKVG 79 (422)
T ss_dssp CSSEEEEEECS----------------SCHHHHHHHHHHHH-HHTTCCEE
T ss_pred cCCcEEEEeCC----------------cChHHHHHHHHHHH-HHCCCCEE
Confidence 34689999997 69999999999999 47788864
No 247
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=37.45 E-value=15 Score=30.59 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=21.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|.++.+.| |- |.||||+..-|+-.+
T Consensus 23 ~~G~~~~l~G----~n----------GsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFG----EF----------GSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEE----ST----------TSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEC----CC----------CCCHHHHHHHHHHHH
Confidence 5688888887 45 999999988777644
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=37.28 E-value=21 Score=33.10 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=25.2
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKV 115 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~ 115 (400)
++-|+++| |. |.|||+++.+++..+...-|.++
T Consensus 152 ~~~lll~G----~~----------GtGKT~La~aia~~~~~~~g~~v 184 (308)
T 2qgz_A 152 QKGLYLYG----DM----------GIGKSYLLAAMAHELSEKKGVST 184 (308)
T ss_dssp CCEEEEEC----ST----------TSSHHHHHHHHHHHHHHHSCCCE
T ss_pred CceEEEEC----CC----------CCCHHHHHHHHHHHHHHhcCCcE
Confidence 56777776 45 99999999999999931556654
No 249
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=36.59 E-value=30 Score=36.87 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=25.7
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
+.+++|.| |. |.|||||...+...|-..-+++..+|
T Consensus 375 ~~~~lI~G----pp----------GTGKT~~i~~~i~~l~~~~~~~ILv~ 410 (802)
T 2xzl_A 375 RPLSLIQG----PP----------GTGKTVTSATIVYHLSKIHKDRILVC 410 (802)
T ss_dssp CSEEEEEC----ST----------TSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEC----CC----------CCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 45788887 67 99999999988877732235555443
No 250
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=36.19 E-value=23 Score=32.93 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=26.3
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
.+.|-||+. -||||||-=|++.| ...|+++.
T Consensus 108 ~~~IaVTGT----------------nGKTTTt~ll~~iL-~~~g~~~~ 138 (326)
T 3eag_A 108 HWVLGVAGT----------------HGKTTTASMLAWVL-EYAGLAPG 138 (326)
T ss_dssp SEEEEEESS----------------SCHHHHHHHHHHHH-HHTTCCCE
T ss_pred CCEEEEECC----------------CCHHHHHHHHHHHH-HHcCCCce
Confidence 468999986 69999999999999 57888753
No 251
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=36.14 E-value=8.6 Score=34.12 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=20.9
Q ss_pred HHHhcCCCCCCCCCCHHHhhhhccC
Q 044054 208 LRKLGISKTKPEDLTPEEINRFARL 232 (400)
Q Consensus 208 l~klgi~~~~p~~lt~ee~~~~~~L 232 (400)
++++||+...-.+||+||+..+...
T Consensus 79 ~~~~gI~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 79 LLDLNFDNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp GTTTTCCSCBTTSCCSSTTHHHHSS
T ss_pred HHHcCCCceEcCCCCHHHHHHHHHH
Confidence 5788997777999999999888755
No 252
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=36.12 E-value=28 Score=31.15 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=22.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
..++.|+++|- . |.||||++.-+++.+.
T Consensus 42 ~~~~~vll~G~----~----------G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGL----T----------GTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBC----T----------TSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECC----C----------CCCHHHHHHHHHHHHH
Confidence 45667888874 5 9999999999999884
No 253
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=36.00 E-value=27 Score=30.80 Aligned_cols=56 Identities=18% Similarity=0.116 Sum_probs=40.4
Q ss_pred HHHccCCCCCHHHHHHHcCCC-Ccchhc--------ccCceeeecchhhhhhcCCCCCcEEEEeccCCCCCCCCC
Q 044054 21 DIANSVEPLHISEIAQELNLK-PNHYDL--------YGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGE 86 (400)
Q Consensus 21 eIa~~~~~~pI~eiA~~lGL~-~dele~--------YG~yKAKv~l~~l~~~~~~~~Gk~VlVTaItPTP~~~~~ 86 (400)
+.+...+..|.++|+++++|+ .+|+|. -|--++|||- .-+.|.||-.+|=-++..+
T Consensus 102 sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ----------~~~~v~V~~~~~R~l~~~q 166 (169)
T 3chm_A 102 TLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQ----------LKRCFEVPFAAGRDLRPGQ 166 (169)
T ss_dssp HHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEET----------TTTEEEEEEECCTTCCC--
T ss_pred HHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcC----------cCCEEEEEeecCCccCHHh
Confidence 455556778999999999999 888887 4657777662 2358889988777664443
No 254
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=35.44 E-value=8 Score=37.36 Aligned_cols=26 Identities=27% Similarity=0.133 Sum_probs=22.0
Q ss_pred Eecccc-------chhcccCchHHHHHHHHHhc
Q 044054 345 VHAGPF-------ANIAHGNSSIVADKIALKLV 370 (400)
Q Consensus 345 VH~GPF-------ANIAhG~nSiiA~~~aLkla 370 (400)
-|+||| .++.||.+|.-+=.-|++++
T Consensus 280 ~~gga~llG~~~pvi~~~g~a~~~~i~~ai~~A 312 (345)
T 1vi1_A 280 NYGGASLFGLKAPVIKAHGSSDSNAVFRAIRQA 312 (345)
T ss_dssp GSCCEEEETBSSCEEECCTTCCHHHHHHHHHHH
T ss_pred ccccceeecCCccEEEeCCCCCHHHHHHHHHHH
Confidence 699999 89999999988777776665
No 255
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=35.32 E-value=29 Score=31.36 Aligned_cols=48 Identities=6% Similarity=-0.038 Sum_probs=31.3
Q ss_pred cccCceeeecc-hhhhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 47 LYGKYKAKVLL-SVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 47 ~YG~yKAKv~l-~~l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.+|+.+..-.+ +.+.+......++.|+++|- . |.||||++.-+++.+.
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~----~----------G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLGL----T----------GTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEEC----T----------TSSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEECC----C----------CCCHHHHHHHHHHHHH
Confidence 46665443332 23333322344668999984 5 9999999999999883
No 256
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=35.09 E-value=49 Score=31.24 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=30.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQ 124 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~ 124 (400)
+++..|.++|- - |.||||+.--|+..+. .-+.++.+.-..|+-
T Consensus 72 ~~~~~v~lvG~----p----------gaGKSTLln~L~~~~~-~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGP----P----------GAGKSTFIEYFGKMLT-ERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECC----T----------TSSHHHHHHHHHHHHH-HTTCCEEEEECCC--
T ss_pred cCceEEEEEcC----C----------CCCHHHHHHHHHHHhh-hcCCeEEEEeecCCC
Confidence 34667777764 3 8999999999999884 446666666666653
No 257
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=34.70 E-value=14 Score=35.12 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=21.4
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|+.|+|+|- - |+||||+.--|+.-+
T Consensus 173 ~~G~~i~ivG~----s----------GsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGE----T----------GSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEES----S----------SSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECC----C----------CCCHHHHHHHHHhcC
Confidence 35788888874 4 999999988887766
No 258
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=34.52 E-value=26 Score=34.13 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
-+.|++|++.| |- |.||||++.-|+..+
T Consensus 166 i~~~~~i~l~G----~~----------GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKG----PI----------DSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEEC----ST----------TSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEC----CC----------CCCHHHHHHHHHhhc
Confidence 46789999988 45 999999998888655
No 259
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=34.31 E-value=35 Score=33.28 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=26.3
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
..+|++.|. - |.||||++.-|++.|+ ..+.++..
T Consensus 39 ~~~IvlvGl----p----------GsGKSTia~~La~~l~-~~~~~t~~ 72 (469)
T 1bif_A 39 PTLIVMVGL----P----------ARGKTYISKKLTRYLN-FIGVPTRE 72 (469)
T ss_dssp CEEEEEECC----T----------TSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred cEEEEEECC----C----------CCCHHHHHHHHHHHHh-ccCCCceE
Confidence 357888887 3 8999999999999995 55665554
No 260
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=33.80 E-value=37 Score=32.88 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=27.8
Q ss_pred hhhhhh-cCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 58 SVLDEL-EGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 58 ~~l~~~-~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
..||++ ..-+.|.+++|+|- - |.||||.+.-++....
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~----p----------g~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAAR----P----------AMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEEC----T----------TSCHHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeC----C----------CCCHHHHHHHHHHHHH
Confidence 445553 33467999999984 3 8999999999988773
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=32.81 E-value=27 Score=29.70 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=19.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|+.+.+.| |- |+||||+..-|+.-+
T Consensus 18 ~~Gei~~l~G----pn----------GsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSG----PS----------AVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEEC----ST----------TSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEC----CC----------CCCHHHHHHHHHhhC
Confidence 4588877776 44 999999887776554
No 262
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=32.59 E-value=33 Score=30.23 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.8
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.|||+.++.+...+
T Consensus 15 GsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 15 GSGKTLKMVSMMAND 29 (199)
T ss_dssp TSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH
Confidence 899999998877665
No 263
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=32.56 E-value=43 Score=32.21 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=31.5
Q ss_pred chhhhhh-cCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcE
Q 044054 57 LSVLDEL-EGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKV 115 (400)
Q Consensus 57 l~~l~~~-~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~ 115 (400)
+..||++ ..-+.|.+|+|+|- - |.||||.+.-++..+ +.-|.++
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~----p----------G~GKTt~al~ia~~~-a~~g~~V 77 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGAR----P----------SMGKTSLMMNMVLSA-LNDDRGV 77 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEEC----T----------TSCHHHHHHHHHHHH-HHTTCEE
T ss_pred ChHHHHHhcCCCCCcEEEEEeC----C----------CCCHHHHHHHHHHHH-HHcCCeE
Confidence 3455553 33467999999985 3 899999999998888 3444443
No 264
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=32.43 E-value=18 Score=33.01 Aligned_cols=16 Identities=56% Similarity=0.939 Sum_probs=14.2
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++.-|++.|+
T Consensus 19 GsGKsTla~~la~~lg 34 (233)
T 3r20_A 19 GTGKSSVSRGLARALG 34 (233)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999988773
No 265
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=32.34 E-value=43 Score=32.99 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=30.7
Q ss_pred hhhhhh-cCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcE
Q 044054 58 SVLDEL-EGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKV 115 (400)
Q Consensus 58 ~~l~~~-~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~ 115 (400)
..||++ ..-+.|.+|+|+|- - |.||||.+.-++.... .-|+++
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~----p----------G~GKTtlal~ia~~~a-~~g~~v 228 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAAR----P----------SMGKTAFALKQAKNMS-DNDDVV 228 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEEC----S----------SSSHHHHHHHHHHHHH-HTTCEE
T ss_pred HHHHhhcCCCCCCcEEEEEeC----C----------CCChHHHHHHHHHHHH-HcCCEE
Confidence 445553 23467999999995 3 8999999999988773 335443
No 266
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=32.23 E-value=16 Score=31.37 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=16.8
Q ss_pred CCccchhHHHHHHHHhhhcCCc
Q 044054 93 GEGKSTTTVGLCQALGAFLDKK 114 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~ 114 (400)
|+||||+..-|+..+. .-|.+
T Consensus 12 GsGKSTL~~~L~~~~~-~~g~~ 32 (171)
T 2f1r_A 12 DSGKTTLITRMMPILR-ERGLR 32 (171)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCC
T ss_pred CCCHHHHHHHHHHHhh-hcCCc
Confidence 9999999999998884 44443
No 267
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=32.19 E-value=31 Score=33.60 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=18.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLC 104 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~ 104 (400)
+.|.++.+.| |- |+||||+..-|+
T Consensus 28 ~~Ge~~~llG----ps----------GsGKSTLLr~ia 51 (359)
T 3fvq_A 28 DPGEILFIIG----AS----------GCGKTTLLRCLA 51 (359)
T ss_dssp CTTCEEEEEE----ST----------TSSHHHHHHHHH
T ss_pred cCCCEEEEEC----CC----------CchHHHHHHHHh
Confidence 4688888877 56 999999865444
No 268
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=32.10 E-value=17 Score=30.69 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=13.3
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.||||++.-|++.+
T Consensus 13 gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 13 AAGKSTIAKRVASEL 27 (219)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc
Confidence 899999998888766
No 269
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=31.98 E-value=34 Score=33.43 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=28.1
Q ss_pred hhhhhh-cCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 58 SVLDEL-EGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 58 ~~l~~~-~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
..||++ ..-+.|.+++|+|- - |.||||.+.-++..+.
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~----p----------G~GKT~lal~~a~~~a 267 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSG----S----------GMVMSTFVRQQALQWG 267 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEES----S----------CHHHHHHHHHHHHHHT
T ss_pred hhhhHhhcccCCCeEEEEeec----C----------CCCchHHHHHHHHHHH
Confidence 345543 33577999999985 3 8999999999988873
No 270
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=31.87 E-value=32 Score=30.87 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=22.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
++.|+|++-| |- |+||+|.+.=|++.++
T Consensus 27 ~k~kiI~llG----pP----------GsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLG----GP----------GSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEEC----CT----------TCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEEC----CC----------CCCHHHHHHHHHHHHC
Confidence 4578998876 44 8999999988888773
No 271
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=31.78 E-value=26 Score=31.92 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=20.6
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHH
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQA 106 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~a 106 (400)
+|+=||++| |. |.||||++..|.+.
T Consensus 15 ~G~gvli~G----~S----------GaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITG----EA----------NIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEE----SS----------SSSHHHHHHHHHHT
T ss_pred CCEEEEEEc----CC----------CCCHHHHHHHHHHc
Confidence 577888887 45 99999999998873
No 272
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=30.09 E-value=42 Score=32.65 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=30.2
Q ss_pred hhhhcC-CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcE
Q 044054 60 LDELEG-SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKV 115 (400)
Q Consensus 60 l~~~~~-~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~ 115 (400)
++++.. +++-|+|-|||. -|||||+-=|.+.| ...|.++
T Consensus 42 l~~lg~p~~~~~vI~VtGT----------------NGKgSt~~~l~~iL-~~~G~~v 81 (437)
T 3nrs_A 42 AERLDLLKPAPKIFTVAGT----------------NGKGTTCCTLEAIL-LAAGLRV 81 (437)
T ss_dssp HHHTTCSCSSSEEEEEECS----------------SSHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHcCCccccCCEEEEECC----------------cChHHHHHHHHHHH-HHCCCcE
Confidence 344432 345789999997 69999999999999 4678886
No 273
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=29.79 E-value=37 Score=33.35 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=18.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLC 104 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~ 104 (400)
+.|.++.+.| |- |+||||+..-|+
T Consensus 27 ~~Ge~~~llG----ps----------GsGKSTLLr~ia 50 (381)
T 3rlf_A 27 HEGEFVVFVG----PS----------GCGKSTLLRMIA 50 (381)
T ss_dssp CTTCEEEEEC----CT----------TSSHHHHHHHHH
T ss_pred CCCCEEEEEc----CC----------CchHHHHHHHHH
Confidence 4688887776 55 999999866554
No 274
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=29.76 E-value=23 Score=28.54 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=19.6
Q ss_pred EEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 72 VVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 72 VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
|+++| |. |.||||++..+++.+.
T Consensus 41 ~ll~G----~~----------G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSG----PP----------GTGKTATAIALARDLF 63 (226)
T ss_dssp EEEEC----ST----------TSSHHHHHHHHHHHHH
T ss_pred EEEEC----CC----------CCCHHHHHHHHHHHHh
Confidence 77877 45 9999999999999884
No 275
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=29.29 E-value=34 Score=32.54 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=20.5
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
.| +.+++|- - |.||||.--.++-+|
T Consensus 23 ~g-~~~i~G~----N----------GaGKTTll~ai~~al 47 (365)
T 3qf7_A 23 SG-ITVVEGP----N----------GAGKSSLFEAISFAL 47 (365)
T ss_dssp SE-EEEEECC----T----------TSSHHHHHHHHHHHH
T ss_pred CC-eEEEECC----C----------CCCHHHHHHHHHHHh
Confidence 45 7888874 3 999999999998887
No 276
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=29.18 E-value=35 Score=30.76 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.7
Q ss_pred EEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 71 YVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 71 ~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.|+++| |. |.||||++.-+++.+.
T Consensus 46 ~~li~G----~~----------G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLG----RP----------GTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEEC----CT----------TSSHHHHHHHHHHHHT
T ss_pred eEEEEC----CC----------CCCHHHHHHHHHHHHh
Confidence 888887 45 9999999999998883
No 277
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=28.28 E-value=23 Score=31.78 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=14.8
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|+||||++..|++.|+
T Consensus 24 gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 24 GSGGRIVGKKLAEELG 39 (223)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC
Confidence 9999999999999884
No 278
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=27.80 E-value=26 Score=35.23 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=31.1
Q ss_pred cccCceeeecch---hhhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 47 LYGKYKAKVLLS---VLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 47 ~YG~yKAKv~l~---~l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.||-..+|-.+. ++..+...-+|+.|++.| |- |.||||++..|+..++
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~G----p~----------GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAG----PP----------GVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEES----SS----------SSSHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEEC----CC----------CCCHHHHHHHHHHhcC
Confidence 466555443331 223333334688888876 45 9999999999998884
No 279
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=27.18 E-value=59 Score=31.71 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=41.5
Q ss_pred cCCCCcchhcccCceeeecchhhhh-hcC-CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH---hhhc-
Q 044054 38 LNLKPNHYDLYGKYKAKVLLSVLDE-LEG-SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL---GAFL- 111 (400)
Q Consensus 38 lGL~~dele~YG~yKAKv~l~~l~~-~~~-~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL---~~~l- 111 (400)
-++++..-..+|+..- ++.|.+ +.. ....++|+|+|+ . |-||||++.-++... ..+.
T Consensus 117 ~~~P~~~~~~vGR~~~---l~~L~~~L~~~~~~~~~v~I~G~----~----------GiGKTtLa~~~~~~~~~~~~~f~ 179 (591)
T 1z6t_A 117 GGVPQRPVVFVTRKKL---VNAIQQKLSKLKGEPGWVTIHGM----A----------GCGKSVLAAEAVRDHSLLEGCFP 179 (591)
T ss_dssp TTCCCCCSSCCCCHHH---HHHHHHHHTTSTTSCEEEEEECC----T----------TSSHHHHHHHHHCCHHHHHHHCT
T ss_pred CCCCCCCCeecccHHH---HHHHHHHHhcccCCCceEEEEcC----C----------CCCHHHHHHHHHhchhHHHhhCC
Confidence 3677666667887542 222222 221 245789999996 6 999999998776432 1233
Q ss_pred CCcEEEEecCC
Q 044054 112 DKKVVTCLRQP 122 (400)
Q Consensus 112 gk~~~~~lRqP 122 (400)
+...++++.+.
T Consensus 180 ~~v~wv~~~~~ 190 (591)
T 1z6t_A 180 GGVHWVSVGKQ 190 (591)
T ss_dssp TCEEEEEEESC
T ss_pred CceEEEECCCC
Confidence 34566777653
No 280
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=27.14 E-value=23 Score=35.81 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=20.2
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
.|+.|+|+|= - |+|||||...|+.-+
T Consensus 259 ~g~~i~I~Gp----t----------GSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGE----T----------ASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEES----T----------TSSHHHHHHHHGGGS
T ss_pred CCCEEEEECC----C----------CCCHHHHHHHHHhhC
Confidence 4677888873 3 999999998887655
No 281
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.80 E-value=43 Score=30.94 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=21.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|.+++|+| |. |.||||++.-|+...
T Consensus 105 ~~G~i~~i~G----~~----------GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFG----EF----------GSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEE----ST----------TSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEC----CC----------CCCHhHHHHHHHHHH
Confidence 5788999987 34 899999998887654
No 282
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.71 E-value=26 Score=32.05 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=15.0
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++..|++.+.
T Consensus 56 G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 56 GTGKTSTIVALAREIY 71 (340)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 9999999999999984
No 283
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=25.88 E-value=53 Score=31.96 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=30.3
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCC
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQ 124 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~ 124 (400)
+-|.|-|||. -|||||+-=|++.| ...|.++. ....|.+
T Consensus 51 ~~~vI~VTGT----------------nGKtTT~~~l~~iL-~~~G~~vg-~~~Sphl 89 (442)
T 1o5z_A 51 EYKTIHIGGT----------------NGKGSVANMVSNIL-VSQGYRVG-SYYSPHL 89 (442)
T ss_dssp SSEEEEEECS----------------SSHHHHHHHHHHHH-HHHTCCEE-EECCSCS
T ss_pred cCCEEEEECC----------------cCHHHHHHHHHHHH-HHCCCCEE-EECCCCc
Confidence 4579999997 69999999999999 47788854 3455544
No 284
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=25.78 E-value=61 Score=31.13 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=30.0
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCC
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQ 124 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~ 124 (400)
+-|.|-|||. -|||||+-=|++.| ...|.++. ..--|.+
T Consensus 38 ~~~vI~VtGT----------------nGKtTT~~~l~~iL-~~~G~~vg-~~~sp~l 76 (428)
T 1jbw_A 38 QGRYIHVTGT----------------NGKGSAANAIAHVL-EASGLTVG-LYTSPFI 76 (428)
T ss_dssp SSCEEEEECS----------------SCHHHHHHHHHHHH-HHTTCCEE-EECSSCS
T ss_pred cCcEEEEECC----------------CChHHHHHHHHHHH-HHCCCCEE-EEeCCcc
Confidence 4679999997 69999999999999 47788754 3344433
No 285
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=25.72 E-value=29 Score=29.69 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=14.1
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++..+++.++
T Consensus 49 GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 49 GCGKTLLAKAVATEAQ 64 (262)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999988773
No 286
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=25.63 E-value=38 Score=30.56 Aligned_cols=26 Identities=12% Similarity=0.058 Sum_probs=21.2
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
++-|+++| |- |.||||++..++..+.
T Consensus 37 ~~~lll~G----~~----------GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYG----SV----------GTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEEC----SS----------SSSHHHHHHHHHHHHH
T ss_pred CCeEEEEC----CC----------CCcHHHHHHHHHHHHH
Confidence 45677776 45 9999999999999884
No 287
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=25.54 E-value=27 Score=35.74 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=23.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhH---HHH-H-----HHHhhhcCCcEEEEecCCCCCCcccccc
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTT---VGL-C-----QALGAFLDKKVVTCLRQPLQGPTFGIRG 132 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTtt---iGL-~-----~aL~~~lgk~~~~~lRqPS~GP~FGiKG 132 (400)
+.|..+-+.| |- |.||||+. +++ . .++. .+-++.+..+..|+.|-+.|..+
T Consensus 42 ~~Ge~~~liG----pN----------GaGKSTLl~~~~~~~~~~~~~~~l~-~~~~~~l~~l~~~~~~~i~~~~~ 101 (670)
T 3ux8_A 42 PRGKLVVLTG----LS----------GSGKSSLAFDTIYAEGQRRYVESLS-AYARQFLGQMEKPDVDAIEGLSP 101 (670)
T ss_dssp ETTSEEEEEC----ST----------TSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCC
T ss_pred CCCCEEEEEC----CC----------CCCHHHHhcccccccccccccccch-hhhhhhhcccccCCccceecccc
Confidence 5688888887 44 99999994 111 1 1121 12335566778888766555443
No 288
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=25.31 E-value=39 Score=29.33 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=13.0
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.||||+.--|+.-+
T Consensus 11 G~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 11 GVGKTTLIHKASEVL 25 (189)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhhc
Confidence 999999988777766
No 289
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=25.28 E-value=63 Score=31.18 Aligned_cols=32 Identities=22% Similarity=0.087 Sum_probs=27.3
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVT 117 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~ 117 (400)
.+.|-|||. -|||||+-=|++.| ...|+++..
T Consensus 104 ~~vI~VTGT----------------nGKTTT~~ml~~iL-~~~g~~~~~ 135 (439)
T 2x5o_A 104 APIVAITGS----------------NGKSTVTTLVGEMA-KAAGVNVGV 135 (439)
T ss_dssp SCEEEEECS----------------SSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCEEEEECC----------------CCHHHHHHHHHHHH-HhcCCCEEE
Confidence 679999997 69999999999999 477888653
No 290
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=24.80 E-value=16 Score=33.68 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=12.5
Q ss_pred CceeEEecc-ccchh
Q 044054 340 GTPVLVHAG-PFANI 353 (400)
Q Consensus 340 gtP~~VH~G-PFANI 353 (400)
..|++|||| ||+|.
T Consensus 42 ~~~vlVhGGG~~~~~ 56 (269)
T 3ll9_A 42 SSLMIVHGAGSFGHP 56 (269)
T ss_dssp SSEEEEECCGGGTHH
T ss_pred CCEEEEECCcHHHHH
Confidence 679999987 99987
No 291
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=24.65 E-value=48 Score=30.05 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.++-||++| |- |.||||++..|+..+
T Consensus 47 ~~~~~vLL~G----p~----------GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYG----PP----------GCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEEC----SS----------SSSHHHHHHHHHHHT
T ss_pred CCCceEEEEC----CC----------CcCHHHHHHHHHHHh
Confidence 4467788876 45 999999998888766
No 292
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=24.54 E-value=57 Score=30.58 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=22.2
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
-+.|.+++|+| |. |.||||++.-|+-..
T Consensus 119 l~~G~i~~I~G----~~----------GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 119 IESMAITEAFG----EF----------RTGKTQLSHTLCVTA 146 (343)
T ss_dssp BCSSEEEEEEC----CT----------TCTHHHHHHHHHHHT
T ss_pred CCCCeEEEEEC----CC----------CCCHHHHHHHHHHHH
Confidence 36789999987 45 999999988777653
No 293
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=24.44 E-value=42 Score=34.26 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=35.6
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCC
Q 044054 66 SADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQ 124 (400)
Q Consensus 66 ~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~ 124 (400)
...+.+||+-|+ - |+||+|+.--|.+.|+ -.|.+ +.++.+|+-
T Consensus 40 ~~~~vlIvfEG~----D----------~AGKg~~Ik~l~~~l~-prg~~-V~a~~~Pt~ 82 (500)
T 3czp_A 40 ARFPVIILINGI----E----------GAGKGETVKLLNEWMD-PRLIE-VQSFLRPSD 82 (500)
T ss_dssp CCCCEEEEEEEC----T----------TSSHHHHHHHHHHHSC-GGGEE-EEECSSCCH
T ss_pred CCCCEEEEEeCc----C----------CCCHHHHHHHHHHhcC-ccCCe-EEEeCCCCh
Confidence 467899999998 3 7999999999999995 56776 566888874
No 294
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.29 E-value=30 Score=30.86 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=14.9
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++..|++.++
T Consensus 68 G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 68 GTGKTSTILALTKELY 83 (353)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999999984
No 295
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=24.10 E-value=28 Score=30.19 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=13.1
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.||||++..|+..+
T Consensus 59 G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 59 GVGKTHLARAVAGEA 73 (254)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999998888765
No 296
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=23.99 E-value=32 Score=30.31 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=15.0
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++..|++.+.
T Consensus 57 GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 57 GVGKTELAKTLAATLF 72 (311)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHc
Confidence 9999999999999984
No 297
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=23.75 E-value=32 Score=30.18 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=14.8
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++..+++.+.
T Consensus 56 G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 56 GVGKTTAALALARELF 71 (327)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999983
No 298
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.67 E-value=26 Score=31.56 Aligned_cols=15 Identities=33% Similarity=0.632 Sum_probs=13.9
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.||||++.-|+..+
T Consensus 46 G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 46 GTGKKTRCMALLESI 60 (354)
T ss_dssp TSSHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999999876
No 299
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=23.63 E-value=32 Score=31.30 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=20.8
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.+.||+.| |- |.|||+++..++..++
T Consensus 36 p~~lLl~G----pp----------GtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWG----GK----------GQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEE----CT----------TSCHHHHHHHHHHHHT
T ss_pred CeEEEEEC----CC----------CCCHHHHHHHHHHHhC
Confidence 45777776 45 9999999999988884
No 300
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=23.45 E-value=80 Score=31.25 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=26.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcE
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKV 115 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~ 115 (400)
+.|..++|++- . |.||||+..-|+..+. .-|.++
T Consensus 279 ~~G~i~~i~G~----~----------GsGKSTLl~~l~g~~~-~~G~~v 312 (525)
T 1tf7_A 279 FKDSIILATGA----T----------GTGKTLLVSRFVENAC-ANKERA 312 (525)
T ss_dssp ESSCEEEEEEC----T----------TSSHHHHHHHHHHHHH-TTTCCE
T ss_pred CCCcEEEEEeC----C----------CCCHHHHHHHHHHHHH-hCCCCE
Confidence 56999999984 4 9999999988887773 346543
No 301
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=23.41 E-value=34 Score=29.88 Aligned_cols=16 Identities=25% Similarity=0.354 Sum_probs=14.6
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.|||+++..+++.++
T Consensus 60 GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 60 GVGKTEIARRLAKLAN 75 (310)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999998883
No 302
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=23.36 E-value=58 Score=32.05 Aligned_cols=32 Identities=31% Similarity=0.173 Sum_probs=26.9
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
+-++|-|||. -|||||+-=|++.| ...|+++.
T Consensus 107 ~~~vI~VTGT----------------nGKTTT~~ml~~iL-~~~g~~~~ 138 (498)
T 1e8c_A 107 NLRLVGVTGT----------------NGKTTTTQLLAQWS-QLLGEISA 138 (498)
T ss_dssp SSEEEEEESS----------------SCHHHHHHHHHHHH-HHTTCCEE
T ss_pred cCeEEEEeCC----------------cChHHHHHHHHHHH-HhCCCCEE
Confidence 4679999997 69999999999999 47788754
No 303
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=23.27 E-value=23 Score=28.91 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=39.9
Q ss_pred cCCCCCHHHHHHHcCCCCcchhcccCcee-eecchhhhhhcCCCCCcEEEEeccCCCCCCCCCCCcCc
Q 044054 25 SVEPLHISEIAQELNLKPNHYDLYGKYKA-KVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYP 91 (400)
Q Consensus 25 ~~~~~pI~eiA~~lGL~~dele~YG~yKA-Kv~l~~l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~ 91 (400)
...-..-.++|+.+|++...+.-|=+.+. .++++.+.++...=+=.+-++-.-.+.|..+|+|+...
T Consensus 50 ~~~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~Lgv~~~~l~~~~~~~~~~g~~~~~~ 117 (120)
T 2o38_A 50 DRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIRKKPRSRAAARISVVA 117 (120)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEEECCTTCSCCCEEEEE
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCcEEeecCCCcccccCceEEee
Confidence 34455789999999999998888766665 66766665543211111223333455666455554443
No 304
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=23.22 E-value=34 Score=29.74 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=14.3
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++..|+..++
T Consensus 54 GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 54 GTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSSHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhC
Confidence 9999999999988773
No 305
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.11 E-value=34 Score=29.67 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=13.6
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.||||++..|+..+
T Consensus 55 GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 55 GTGKTLLAKAIAGEA 69 (257)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc
Confidence 999999999998776
No 306
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=23.02 E-value=31 Score=30.20 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=19.2
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
++-||++| |- |.||||++..++..+
T Consensus 51 ~~~~ll~G----~~----------GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 51 PKGILLYG----PP----------GTGKTLLAKAVATET 75 (285)
T ss_dssp CSEEEEES----SS----------SSSHHHHHHHHHHHT
T ss_pred CCeEEEEC----CC----------CCcHHHHHHHHHHHh
Confidence 45577775 45 999999998887766
No 307
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=22.73 E-value=34 Score=33.77 Aligned_cols=16 Identities=50% Similarity=0.816 Sum_probs=15.0
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++..|++.|+
T Consensus 34 G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 34 GSGKSTIAEELCQIIN 49 (359)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhC
Confidence 9999999999999985
No 308
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=22.66 E-value=38 Score=32.67 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=19.2
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHH
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQ 105 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~ 105 (400)
.|+=||.+| |. |.||||++..|.+
T Consensus 146 ~g~gvli~G----~s----------G~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTG----RS----------GIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEE----SS----------SSSHHHHHHHHHT
T ss_pred CCEEEEEEc----CC----------CCCHHHHHHHHHH
Confidence 577788887 45 9999999988754
No 309
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=22.41 E-value=27 Score=32.86 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=19.7
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
.|+.|+|+|= - |+||||+.--|+.-+
T Consensus 170 ~g~~v~i~G~----~----------GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGG----T----------GSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEES----T----------TSCHHHHHHHGGGGS
T ss_pred CCCEEEEECC----C----------CCCHHHHHHHHhCCC
Confidence 4778888873 3 999999877766555
No 310
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=22.32 E-value=97 Score=28.97 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=19.5
Q ss_pred CCccchhHHHHHHHHhhhcCCcEEEE
Q 044054 93 GEGKSTTTVGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 93 GEGKTTttiGL~~aL~~~lgk~~~~~ 118 (400)
|.||||+..-|+..+ ...|.+.++.
T Consensus 45 G~GKs~~~~~~~~~~-~~~~~~~~~~ 69 (392)
T 4ag6_A 45 GAGKSFTAKMLLLRE-YMQGSRVIII 69 (392)
T ss_dssp TSSHHHHHHHHHHHH-HTTTCCEEEE
T ss_pred CCCHHHHHHHHHHHH-HHCCCEEEEE
Confidence 999999999888777 3567766553
No 311
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=22.18 E-value=53 Score=31.86 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=17.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLC 104 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~ 104 (400)
+.|.++.+.| |- |+||||+-.-|+
T Consensus 27 ~~Ge~~~llG----pn----------GsGKSTLLr~ia 50 (372)
T 1g29_1 27 KDGEFMILLG----PS----------GCGKTTTLRMIA 50 (372)
T ss_dssp ETTCEEEEEC----ST----------TSSHHHHHHHHH
T ss_pred cCCCEEEEEC----CC----------CcHHHHHHHHHH
Confidence 4588887776 55 999999866554
No 312
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=22.08 E-value=96 Score=29.78 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=22.0
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhH-HHHHHHHhhhcCCcEEEE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTT-VGLCQALGAFLDKKVVTC 118 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTtt-iGL~~aL~~~lgk~~~~~ 118 (400)
|+-++|.+ |- |.|||++. ..+.+.+ ..-|++++..
T Consensus 2 g~~~lv~a----~T----------GsGKT~~~l~~~l~~~-~~~g~~~lvl 37 (431)
T 2v6i_A 2 RELTVLDL----HP----------GAGKTRRVLPQLVREA-VKKRLRTVIL 37 (431)
T ss_dssp CCEEEEEC----CT----------TSCTTTTHHHHHHHHH-HHTTCCEEEE
T ss_pred CCEEEEEc----CC----------CCCHHHHHHHHHHHHH-HhCCCCEEEE
Confidence 56677765 33 99999986 5566444 2346665543
No 313
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=22.02 E-value=87 Score=29.42 Aligned_cols=41 Identities=29% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCC
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 122 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqP 122 (400)
++|..|.++|- - |.||||+.--|+..+. .-+.+....=..|
T Consensus 53 ~~g~~v~i~G~----~----------GaGKSTLl~~l~g~~~-~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 53 GRAIRVGITGV----P----------GVGKSTTIDALGSLLT-AAGHKVAVLAVDP 93 (337)
T ss_dssp CCSEEEEEECC----T----------TSCHHHHHHHHHHHHH-HTTCCEEEEEECG
T ss_pred CCCeEEEEECC----C----------CCCHHHHHHHHHHhhh-hCCCEEEEEEEcC
Confidence 56888888874 4 9999999999988773 3344544444444
No 314
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=22.00 E-value=35 Score=31.48 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=14.3
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++.-++..++
T Consensus 61 G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 61 GLGKTTLAHIIASELQ 76 (334)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhC
Confidence 9999999999988874
No 315
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=21.97 E-value=36 Score=30.66 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=21.5
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
...++++| |. |.||||++..+++.++
T Consensus 38 ~~~~ll~G----~~----------G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSG----TR----------GVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEES----CT----------TSSHHHHHHHHHHHHS
T ss_pred CeEEEEEC----CC----------CCCHHHHHHHHHHHhC
Confidence 45678887 45 9999999999999984
No 316
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=21.85 E-value=65 Score=31.86 Aligned_cols=28 Identities=29% Similarity=0.176 Sum_probs=24.1
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCc
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKK 114 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~ 114 (400)
+.|-|||. -||||||-=|++.| ...|.+
T Consensus 123 ~~IaVTGT----------------nGKTTTt~ml~~iL-~~~g~~ 150 (494)
T 4hv4_A 123 HGIAVAGT----------------HGKTTTTAMLSSIY-AEAGLD 150 (494)
T ss_dssp EEEEEECS----------------SSHHHHHHHHHHHH-HHTTCC
T ss_pred CEEEEecC----------------CChHHHHHHHHHHH-HhcCCC
Confidence 57889886 69999999999999 477875
No 317
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=21.75 E-value=65 Score=32.24 Aligned_cols=32 Identities=19% Similarity=0.031 Sum_probs=26.9
Q ss_pred CCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 68 DGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
+-++|-|||. -|||||+-=|++.|. ..|+++.
T Consensus 145 ~~~vI~VTGT----------------nGKTTT~~ml~~iL~-~~G~~~g 176 (535)
T 2wtz_A 145 RLTVIGITGT----------------SGKTTTTYLVEAGLR-AAGRVAG 176 (535)
T ss_dssp SSEEEEEESS----------------SCHHHHHHHHHHHHH-HTTCCEE
T ss_pred cceEEEeeCC----------------CChHHHHHHHHHHHH-HCCCCEE
Confidence 4579999987 699999999999994 7788754
No 318
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=21.70 E-value=46 Score=29.63 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=39.8
Q ss_pred HHHHHHhcCCC----CCCCCCCHHHhhhhccCCCCCCceeeecccccCcccccceeeccCCCCCCcceecceeeeehhHH
Q 044054 205 FRRLRKLGISK----TKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEI 280 (400)
Q Consensus 205 ~~rl~klgi~~----~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iG~g~~~~G~~re~gFdItvASEi 280 (400)
..-|+.+|+.. ..|.+|+--|+.+..- -|++=.+-+ |.+ +--+. ++-|.....++
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~i----------Aral~~~p~----lll-lDEPt------s~LD~~~~~~i 184 (235)
T 3tif_A 126 LECLKMAELEERFANHKPNQLSGGQQQRVAI----------ARALANNPP----IIL-ADQPT------WALDSKTGEKI 184 (235)
T ss_dssp HHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH----------HHHHTTCCS----EEE-EESTT------TTSCHHHHHHH
T ss_pred HHHHHHCCCChhhhhCChhhCCHHHHHHHHH----------HHHHHcCCC----EEE-EeCCc------ccCCHHHHHHH
Confidence 34567778753 3588888888776531 122211111 111 11122 23566666677
Q ss_pred HHHHHhcCCHHHHHHHhcCcEEeecCC
Q 044054 281 MAVLALTTSLADTRERVGKMVIGNSKA 307 (400)
Q Consensus 281 MAIL~La~dl~Dlr~Rlg~ivva~~~~ 307 (400)
+.+| .+++++-|..||-.+.|
T Consensus 185 ~~~l------~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 185 MQLL------KKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp HHHH------HHHHHHHCCEEEEECSC
T ss_pred HHHH------HHHHHHcCCEEEEEcCC
Confidence 7664 56666667666655444
No 319
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=21.51 E-value=59 Score=29.57 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=22.2
Q ss_pred CCcEEEE--eccCCCCCCCCCCCcCcCCCccchhHHHHHHHHh
Q 044054 68 DGYYVVV--GEITRTPLGEGEITQYPLGEGKSTTTVGLCQALG 108 (400)
Q Consensus 68 ~Gk~VlV--TaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~ 108 (400)
.+..++| +|. . |.||||++.-+++.+.
T Consensus 49 ~~~~~li~i~G~----~----------G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 49 SDVNMIYGSIGR----V----------GIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CCEEEEEECTTC----C----------SSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCc----C----------CCCHHHHHHHHHHHHH
Confidence 4678888 874 5 9999999999998884
No 320
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=21.48 E-value=42 Score=30.56 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=22.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|.+++|+|- . |.||||++.-++...
T Consensus 96 ~~g~i~~i~G~----~----------gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGV----F----------GSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEES----T----------TSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECC----C----------CCCHHHHHHHHHHHH
Confidence 67899999983 4 899999998887653
No 321
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=21.30 E-value=47 Score=29.61 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=18.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLC 104 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~ 104 (400)
+.|+.+.+.| |- |+||||+..-|+
T Consensus 29 ~~Ge~~~i~G----~n----------GsGKSTLl~~l~ 52 (237)
T 2cbz_A 29 PEGALVAVVG----QV----------GCGKSSLLSALL 52 (237)
T ss_dssp CTTCEEEEEC----ST----------TSSHHHHHHHHT
T ss_pred CCCCEEEEEC----CC----------CCCHHHHHHHHh
Confidence 5688888887 45 999999765443
No 322
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=21.21 E-value=63 Score=32.31 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=26.3
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEE
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVV 116 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~ 116 (400)
.+.|-|||. -||||||-=|++.| ...|.++.
T Consensus 122 ~~vIaVTGT----------------nGKTTTt~li~~iL-~~~G~~~~ 152 (524)
T 3hn7_A 122 RHVIAVAGT----------------HGKTTTTTMLAWIL-HYAGIDAG 152 (524)
T ss_dssp SEEEEEECS----------------SCHHHHHHHHHHHH-HHTTCCCE
T ss_pred CcEEEEECC----------------CCHHHHHHHHHHHH-HHcCCCce
Confidence 568999997 69999999999999 47787754
No 323
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=21.16 E-value=54 Score=29.76 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=0.0
Q ss_pred cEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 70 YYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 70 k~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
++|+|||. - |+||+|+|--|...+
T Consensus 12 ~II~itGk----~----------~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 12 LVLLFSGK----R----------KSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEEEC----T----------TSSHHHHHHHHHHHH
T ss_pred EEEEEECC----C----------CCChHHHHHHHHHHc
No 324
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=21.08 E-value=1.1e+02 Score=28.27 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=33.1
Q ss_pred CCcEEEEeccCCCCC--C-CCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCC
Q 044054 68 DGYYVVVGEITRTPL--G-EGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGP 126 (400)
Q Consensus 68 ~Gk~VlVTaItPTP~--~-~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP 126 (400)
.||-|||||= ||-. = ---|+.++ .|| .-..|++++ ...|.+++.+-|..++-|
T Consensus 2 ~gk~vlVTgG-~T~E~IDpVR~ItN~S--SG~--mG~aiA~~~-~~~Ga~V~lv~~~~~~~~ 57 (232)
T 2gk4_A 2 NAMKILVTSG-GTSEAIDSVRSITNHS--TGH--LGKIITETL-LSAGYEVCLITTKRALKP 57 (232)
T ss_dssp -CCEEEEECS-BCEEESSSSEEEEECC--CCH--HHHHHHHHH-HHTTCEEEEEECTTSCCC
T ss_pred CCCEEEEeCC-CcccccCceeeccCCC--CCH--HHHHHHHHH-HHCCCEEEEEeCCccccc
Confidence 4899999984 3310 0 00022222 343 456678889 588999999988877765
No 325
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=21.08 E-value=35 Score=30.10 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=19.9
Q ss_pred CcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 69 GYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 69 Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
++-||++| |- |.||||++..++..+
T Consensus 54 ~~~vll~G----p~----------GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFG----PP----------GNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEES----SS----------SSCHHHHHHHHHHHT
T ss_pred CCeEEEEC----cC----------CCCHHHHHHHHHHHh
Confidence 56677776 45 999999998888776
No 326
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.83 E-value=53 Score=30.17 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=12.8
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.||||+--.|.-.+
T Consensus 34 GsGKS~ll~ai~~ll 48 (322)
T 1e69_A 34 GSGKSNIIDAIKWVF 48 (322)
T ss_dssp TTCSTHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHHh
Confidence 999999988877665
No 327
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=20.81 E-value=58 Score=29.62 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=18.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLC 104 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~ 104 (400)
+.|..+.+.| |- |+||||+..-|+
T Consensus 44 ~~Ge~~~l~G----~N----------GsGKSTLlk~l~ 67 (267)
T 2zu0_C 44 HPGEVHAIMG----PN----------GSGKSTLSATLA 67 (267)
T ss_dssp CTTCEEEEEC----CT----------TSSHHHHHHHHH
T ss_pred cCCCEEEEEC----CC----------CCCHHHHHHHHh
Confidence 4688888887 44 999999765544
No 328
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=20.79 E-value=51 Score=31.93 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=17.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLC 104 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~ 104 (400)
+.|.++.+.| |- |+||||+-.-|+
T Consensus 39 ~~Ge~~~llG----pn----------GsGKSTLLr~ia 62 (355)
T 1z47_A 39 REGEMVGLLG----PS----------GSGKTTILRLIA 62 (355)
T ss_dssp ETTCEEEEEC----ST----------TSSHHHHHHHHH
T ss_pred CCCCEEEEEC----CC----------CCcHHHHHHHHh
Confidence 4588887776 55 999999866554
No 329
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=20.62 E-value=41 Score=29.79 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=10.9
Q ss_pred CCccchhHHHHHH
Q 044054 93 GEGKSTTTVGLCQ 105 (400)
Q Consensus 93 GEGKTTttiGL~~ 105 (400)
|+||||.+.-|++
T Consensus 9 ~SGKS~~A~~la~ 21 (180)
T 1c9k_A 9 RSGKSRHAEALIG 21 (180)
T ss_dssp TSSHHHHHHHHHC
T ss_pred CCcHHHHHHHHHh
Confidence 8999999887763
No 330
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=20.53 E-value=69 Score=30.39 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=21.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054 67 ADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL 107 (400)
Q Consensus 67 ~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL 107 (400)
+.|+.|.+.| |- |.||||+..-|+.-+
T Consensus 124 ~~Ge~vaIvG----ps----------GsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIG----PP----------NTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEEC----SS----------SSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEC----CC----------CCcHHHHHHHHhhhc
Confidence 6788888887 45 999999887777655
No 331
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=20.52 E-value=36 Score=30.16 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=13.1
Q ss_pred CCccchhHHHHHHHH
Q 044054 93 GEGKSTTTVGLCQAL 107 (400)
Q Consensus 93 GEGKTTttiGL~~aL 107 (400)
|.||||++..|+..+
T Consensus 83 GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 83 GVGKTHLARAVAGEA 97 (278)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHc
Confidence 999999998888765
No 332
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=20.42 E-value=44 Score=29.63 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=14.4
Q ss_pred CCccchhHHHHHHHHh
Q 044054 93 GEGKSTTTVGLCQALG 108 (400)
Q Consensus 93 GEGKTTttiGL~~aL~ 108 (400)
|.||||++..+++.++
T Consensus 48 GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 48 GLGKTTLAHVIAHELG 63 (324)
T ss_dssp TCCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999988873
No 333
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A
Probab=20.19 E-value=14 Score=35.62 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=35.5
Q ss_pred HHccCCCCCHHHHHHHcCCCCcch-------hcccCce-eeecchhhhhhcC--CCCC------cEEEEecc
Q 044054 22 IANSVEPLHISEIAQELNLKPNHY-------DLYGKYK-AKVLLSVLDELEG--SADG------YYVVVGEI 77 (400)
Q Consensus 22 Ia~~~~~~pI~eiA~~lGL~~del-------e~YG~yK-AKv~l~~l~~~~~--~~~G------k~VlVTaI 77 (400)
|-.+...+-|+.++++|||+++.+ .-||+.- |-|.+ +|+++.+ -+.| .+||+.+.
T Consensus 298 v~Hq~n~~il~~v~~~Lgl~~ek~~~s~~~l~~~GNtssAsip~-~L~~~~~~~~~~G~~g~~~d~vll~~f 368 (387)
T 3oit_A 298 AVHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIF-ALDELRRQRKEAAAAGEWPELGVMMAF 368 (387)
T ss_dssp EECCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHCBCGGGHHHH-HHHHHHHC----------CCEEEEEEE
T ss_pred EECCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchHHhHHHH-HHHHHHHhhhccCCCCCCCCEEEEEEe
Confidence 456777778999999999999985 4599954 44433 3444321 1335 58888777
Done!