AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>044056
NINKMEGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYG
TSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAE
LSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS
QVCCQSSGN
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT1G72190 AT1G72190 AT1G72190	protein from Arabidopsis thaliana	1.1e-39
BLAST match view associations BLAST with phgdh phgdh phgdh phosphoglycerate dehydrogenase	gene_product from Danio rerio	4.0e-05
BLAST match view associations BLAST with serA serA serA D-3-phosphoglycerate dehydrogenase	protein from Mycobacterium tuberculosis	9.8e-05
BLAST match view associations BLAST with MGG_10814 MGG_10814 MGG_10814 D-3-phosphoglycerate dehydrogenase	protein from Magnaporthe oryzae 70-15	0.00010
BLAST match view associations BLAST with Phgdh Phgdh Phgdh phosphoglycerate dehydrogenase	gene from Rattus norvegicus	0.00024
BLAST match view associations BLAST with PHGDH PHGDH PHGDH D-3-phosphoglycerate dehydrogenase	protein from Homo sapiens	0.00028
BLAST match view associations BLAST with PHGDH PHGDH PHGDH Uncharacterized protein	protein from Gallus gallus	0.00030
BLAST match view associations BLAST with PHGDH PHGDH PHGDH D-3-phosphoglycerate dehydrogenase	protein from Homo sapiens	0.00031
BLAST match view associations BLAST with PHGDH PHGDH PHGDH D-3-phosphoglycerate dehydrogenase	protein from Sus scrofa	0.00031
BLAST match view associations BLAST with CHY_2698 CHY_2698 CHY_2698 D-3-phosphoglycerate dehydrogenase	protein from Carboxydothermus hydrogenoformans Z-2901	0.00041
BLAST match view associations BLAST with Phgdh Phgdh Phgdh 3-phosphoglycerate dehydrogenase	protein from Mus musculus	0.00042
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044056
        (189 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2207046 - symbol:AT1G72190 species:3702 "Arabi...   423  1.1e-39   1
ZFIN|ZDB-GENE-030131-647 - symbol:phgdh "phosphoglycerate...   120  4.0e-05   1
UNIPROTKB|P0A544 - symbol:serA "D-3-phosphoglycerate dehy...   117  9.8e-05   1
UNIPROTKB|G4MVW0 - symbol:MGG_10814 "D-3-phosphoglycerate...   114  0.00010   1
RGD|61987 - symbol:Phgdh "phosphoglycerate dehydrogenase"...   114  0.00024   1
UNIPROTKB|Q5SZU1 - symbol:PHGDH "D-3-phosphoglycerate deh...   113  0.00028   1
UNIPROTKB|E1C7Y3 - symbol:PHGDH "Uncharacterized protein"...   113  0.00030   1
UNIPROTKB|O43175 - symbol:PHGDH "D-3-phosphoglycerate deh...   113  0.00031   1
UNIPROTKB|A5GFY8 - symbol:PHGDH "D-3-phosphoglycerate deh...   113  0.00031   1
TIGR_CMR|CHY_2698 - symbol:CHY_2698 "D-3-phosphoglycerate...   112  0.00041   1
MGI|MGI:1355330 - symbol:Phgdh "3-phosphoglycerate dehydr...   112  0.00042   1
POMBASE|SPACUNK4.10 - symbol:SPACUNK4.10 "glyoxylate redu...   108  0.00062   1


>TAIR|locus:2207046 [details] [associations]
            symbol:AT1G72190 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008152 "metabolic process"
            evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=ISS]
            [GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
            donors, NAD or NADP as acceptor" evidence=IEA] [GO:0048037
            "cofactor binding" evidence=IEA] [GO:0051287 "NAD binding"
            evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] InterPro:IPR006139 InterPro:IPR006140 Pfam:PF00389
            Pfam:PF02826 PROSITE:PS00671 InterPro:IPR016040 EMBL:CP002684
            Gene3D:3.40.50.720 GO:GO:0051287 GO:GO:0016616 IPI:IPI00518046
            RefSeq:NP_177364.2 UniGene:At.28051 UniGene:At.48363
            UniGene:At.74870 ProteinModelPortal:F4IBQ3 SMR:F4IBQ3
            EnsemblPlants:AT1G72190.1 GeneID:843551 KEGG:ath:AT1G72190
            OMA:GYVEQDS Uniprot:F4IBQ3
        Length = 373

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 93/187 (49%), Positives = 126/187 (67%)

Query:     4 KMEGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIK-GLCFFLSMHSLYASYGTS 62
             K+E +    D  +T VLF GPHFP S+N+ + YLQ Y  IK  +  +  +  +  +Y   
Sbjct:    39 KIERIVEKEDMHVTRVLFCGPHFPDSYNFTREYLQPYPFIKVDVVHYRDVPEVIKNYHIC 98

Query:    63 EQM-IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAEL 121
               M +  DSNVI+RA+ + LI+++ VGL+GVDIDA T   IK ARI  + +GNAASC+E+
Sbjct:    99 VAMTMQMDSNVISRASNIKLIMQYGVGLDGVDIDAATKHGIKVARIPSEGTGNAASCSEM 158

Query:   122 SIYLMLGLLRKH----------IV--PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
             +IYLMLGLL+K           ++  PTG+TLLGKTVFI G+GNIG+ELAKRL+PFG ++
Sbjct:   159 AIYLMLGLLKKQNEMQISLRNRLLGEPTGDTLLGKTVFILGYGNIGIELAKRLKPFGSRV 218

Query:   170 IAAKRSW 176
             IA KR W
Sbjct:   219 IATKRFW 225


>ZFIN|ZDB-GENE-030131-647 [details] [associations]
            symbol:phgdh "phosphoglycerate dehydrogenase"
            species:7955 "Danio rerio" [GO:0016616 "oxidoreductase activity,
            acting on the CH-OH group of donors, NAD or NADP as acceptor"
            evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0008152 "metabolic
            process" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004617 "phosphoglycerate dehydrogenase activity"
            evidence=IEA] [GO:0048037 "cofactor binding" evidence=IEA]
            [GO:0006564 "L-serine biosynthetic process" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR006139
            InterPro:IPR006140 InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826
            PROSITE:PS00065 InterPro:IPR016040 ZFIN:ZDB-GENE-030131-647
            Gene3D:3.40.50.720 GO:GO:0051287 GeneTree:ENSGT00530000063021
            GO:GO:0006564 GO:GO:0004617 PANTHER:PTHR10996:SF20
            TIGRFAMs:TIGR01327 OMA:FGVEQLP EMBL:BX321905 IPI:IPI00510909
            ProteinModelPortal:F1QEY8 Ensembl:ENSDART00000012938
            ArrayExpress:F1QEY8 Bgee:F1QEY8 Uniprot:F1QEY8
        Length = 528

 Score = 120 (47.3 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 39/116 (33%), Positives = 57/116 (49%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             ++VI   + + +I R   G++ VD+DA T   I    ++   SGN  S AEL+  L++ L
Sbjct:    61 ADVINAGSSLKIIGRAGTGVDNVDVDAATKRGII---VMNTPSGNTLSAAELTCALVMSL 117

Query:   130 LRKHIVPT---------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R HI                  G  L GK + I G G IG E+A R++ FG+K I
Sbjct:   118 SR-HIPQAVISMKDGKWDRKKFMGSELYGKVLGIVGLGRIGKEVATRMQSFGMKTI 172


>UNIPROTKB|P0A544 [details] [associations]
            symbol:serA "D-3-phosphoglycerate dehydrogenase"
            species:1773 "Mycobacterium tuberculosis" [GO:0004617
            "phosphoglycerate dehydrogenase activity" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0006564 "L-serine biosynthetic process"
            evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0051289
            "protein homotetramerization" evidence=IPI] InterPro:IPR002912
            InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
            Pfam:PF00389 Pfam:PF01842 Pfam:PF02826 PROSITE:PS00065
            PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040 GO:GO:0005886
            GO:GO:0040007 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR Gene3D:3.40.50.720 GO:GO:0051287
            GO:GO:0016597 GO:GO:0051289 EMBL:BX842581 eggNOG:COG0111
            GO:GO:0006564 KO:K00058 UniPathway:UPA00135 GO:GO:0004617
            HOGENOM:HOG000136693 TIGRFAMs:TIGR01327 PIR:G70854
            RefSeq:NP_337589.1 RefSeq:YP_006516452.1 RefSeq:YP_177916.1
            PDB:1YGY PDB:3DC2 PDB:3DDN PDBsum:1YGY PDBsum:3DC2 PDBsum:3DDN
            ProteinModelPortal:P0A544 SMR:P0A544 PhosSite:P12071730
            PRIDE:P0A544 EnsemblBacteria:EBMYCT00000000541
            EnsemblBacteria:EBMYCT00000069692 GeneID:13317795 GeneID:887154
            GeneID:925199 KEGG:mtc:MT3074 KEGG:mtu:Rv2996c KEGG:mtv:RVBD_2996c
            PATRIC:18128526 TubercuList:Rv2996c OMA:YGVPHLT
            ProtClustDB:PRK13581 EvolutionaryTrace:P0A544 Uniprot:P0A544
        Length = 528

 Score = 117 (46.2 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 35/117 (29%), Positives = 58/117 (49%)

Query:    69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
             D+ V+  A  + ++ R  VGL+ VD+DA T    +   ++   + N  S AE ++ L+L 
Sbjct:    56 DAEVLAAAPKLKIVARAGVGLDNVDVDAAT---ARGVLVVNAPTSNIHSAAEHALALLLA 112

Query:   129 L----------LRKHIVP----TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
                        LR+H       +G  + GKTV + G G IG  +A+R+  FG  ++A
Sbjct:   113 ASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 169


>UNIPROTKB|G4MVW0 [details] [associations]
            symbol:MGG_10814 "D-3-phosphoglycerate dehydrogenase"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR006139
            InterPro:IPR006140 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065
            PROSITE:PS00671 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0051287
            GO:GO:0016616 EMBL:CM001232 RefSeq:XP_003715635.1
            ProteinModelPortal:G4MVW0 EnsemblFungi:MGG_10814T0 GeneID:2676321
            KEGG:mgr:MGG_10814 Uniprot:G4MVW0
        Length = 322

 Score = 114 (45.2 bits), Expect = 0.00010, P = 0.00010
 Identities = 36/102 (35%), Positives = 53/102 (51%)

Query:    87 VGLEGVDIDALTN--CAIKAARILGDVSGNAASCAELSIYLMLGLLR-------KHI--- 134
             +G  GV ID +    C  +  RIL     NA + AE+ + L + + R       + +   
Sbjct:    77 IGKHGVGIDKIDKAACDARGIRILNTPGANAQAVAEIVVALAMAVARNIPSIYARQLSGP 136

Query:   135 VP----TGETLLGKTVFISGFGNIGVELAKRL-RPFGVKIIA 171
             VP    TG+TL GKTV + G GNIG ++A+ L R F  +I+A
Sbjct:   137 VPKETCTGQTLFGKTVGVIGMGNIGRKVARMLQRGFDAQIVA 178


>RGD|61987 [details] [associations]
            symbol:Phgdh "phosphoglycerate dehydrogenase" species:10116
           "Rattus norvegicus" [GO:0004617 "phosphoglycerate dehydrogenase
           activity" evidence=IDA] [GO:0005575 "cellular_component"
           evidence=ND] [GO:0006541 "glutamine metabolic process"
           evidence=IEA;ISO] [GO:0006544 "glycine metabolic process"
           evidence=IEA;ISO] [GO:0006563 "L-serine metabolic process"
           evidence=ISO] [GO:0006564 "L-serine biosynthetic process"
           evidence=IEA] [GO:0006566 "threonine metabolic process"
           evidence=IEA;ISO] [GO:0009070 "serine family amino acid biosynthetic
           process" evidence=TAS] [GO:0009448 "gamma-aminobutyric acid
           metabolic process" evidence=IEA;ISO] [GO:0010468 "regulation of gene
           expression" evidence=IEA;ISO] [GO:0019530 "taurine metabolic
           process" evidence=IEA;ISO] [GO:0021510 "spinal cord development"
           evidence=IEA;ISO] [GO:0021782 "glial cell development"
           evidence=IEA;ISO] [GO:0021915 "neural tube development"
           evidence=IEA;ISO] [GO:0022008 "neurogenesis" evidence=ISO]
           [GO:0022402 "cell cycle process" evidence=IEA;ISO] [GO:0031175
           "neuron projection development" evidence=IEA;ISO] [GO:0051287 "NAD
           binding" evidence=IEA] InterPro:IPR006139 InterPro:IPR006140
           InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065
           PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040 RGD:61987
           Gene3D:3.40.50.720 GO:GO:0051287 GO:GO:0021510 GO:GO:0021915
           GO:GO:0031175 GO:GO:0010468 GO:GO:0006541 GO:GO:0006544
           GO:GO:0019530 GO:GO:0022402 eggNOG:COG0111
           GeneTree:ENSGT00530000063021 GO:GO:0006564 GO:GO:0009448
           GO:GO:0021782 GO:GO:0009070 GO:GO:0006566 KO:K00058
           UniPathway:UPA00135 GO:GO:0004617 CTD:26227 HOGENOM:HOG000136693
           HOVERGEN:HBG054241 OrthoDB:EOG4Q2DF9 PANTHER:PTHR10996:SF20
           TIGRFAMs:TIGR01327 OMA:TGVFDGY EMBL:X97772 EMBL:AJ271975
           EMBL:BC086327 IPI:IPI00475835 RefSeq:NP_113808.1 UniGene:Rn.6872
           ProteinModelPortal:O08651 SMR:O08651 IntAct:O08651 STRING:O08651
           PhosphoSite:O08651 World-2DPAGE:0004:O08651 PRIDE:O08651
           Ensembl:ENSRNOT00000056173 GeneID:58835 KEGG:rno:58835
           UCSC:RGD:61987 InParanoid:O08651 BioCyc:MetaCyc:MONOMER-10261
           NextBio:611397 Genevestigator:O08651 GermOnline:ENSRNOG00000019328
           Uniprot:O08651
        Length = 533

 Score = 114 (45.2 bits), Expect = 0.00024, P = 0.00024
 Identities = 35/115 (30%), Positives = 59/115 (51%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             ++VI  A  + ++ R   G++ VD++A T    K   ++   +GN+ S AEL+  +++ L
Sbjct:    61 ADVINAAEKLQVVGRAGTGVDNVDLEAATR---KGVLVMNTPNGNSLSAAELTCGMLMCL 117

Query:   130 LRKHIVPT--------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R+    T              G  L GKT+ I G G IG E+A R++ FG+K +
Sbjct:   118 ARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTV 172


>UNIPROTKB|Q5SZU1 [details] [associations]
            symbol:PHGDH "D-3-phosphoglycerate dehydrogenase"
            species:9606 "Homo sapiens" [GO:0004617 "phosphoglycerate
            dehydrogenase activity" evidence=IEA] [GO:0006564 "L-serine
            biosynthetic process" evidence=IEA] [GO:0051287 "NAD binding"
            evidence=IEA] InterPro:IPR006139 InterPro:IPR006140
            InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065
            PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040
            Gene3D:3.40.50.720 GO:GO:0051287 GO:GO:0006564 EMBL:AL589734
            GO:GO:0004617 HOVERGEN:HBG054241 PANTHER:PTHR10996:SF20
            TIGRFAMs:TIGR01327 EMBL:AL139251 UniGene:Hs.487296 HGNC:HGNC:8923
            ChiTaRS:PHGDH EMBL:AL109966 IPI:IPI00642548 SMR:Q5SZU1
            STRING:Q5SZU1 REPRODUCTION-2DPAGE:IPI00642548
            Ensembl:ENST00000369407 UCSC:uc001eib.3 Uniprot:Q5SZU1
        Length = 499

 Score = 113 (44.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 36/115 (31%), Positives = 59/115 (51%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             ++VI  A  + ++ R   G++ VD++A T    K   ++   +GN+ S AEL+  +++ L
Sbjct:    27 ADVINAAEKLQVVGRAGTGVDNVDLEAATR---KGILVMNTPNGNSLSAAELTCGMIMCL 83

Query:   130 LRKHIVPT--------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R+    T              G  L GKT+ I G G IG E+A R++ FG+K I
Sbjct:    84 ARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTI 138


>UNIPROTKB|E1C7Y3 [details] [associations]
            symbol:PHGDH "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0004617 "phosphoglycerate dehydrogenase activity"
            evidence=IEA] [GO:0006564 "L-serine biosynthetic process"
            evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA] [GO:0006541
            "glutamine metabolic process" evidence=IEA] [GO:0006544 "glycine
            metabolic process" evidence=IEA] [GO:0006566 "threonine metabolic
            process" evidence=IEA] [GO:0009448 "gamma-aminobutyric acid
            metabolic process" evidence=IEA] [GO:0010468 "regulation of gene
            expression" evidence=IEA] [GO:0019530 "taurine metabolic process"
            evidence=IEA] [GO:0021510 "spinal cord development" evidence=IEA]
            [GO:0021782 "glial cell development" evidence=IEA] [GO:0021915
            "neural tube development" evidence=IEA] [GO:0022402 "cell cycle
            process" evidence=IEA] [GO:0031175 "neuron projection development"
            evidence=IEA] InterPro:IPR006139 InterPro:IPR006140
            InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065
            PROSITE:PS00670 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0051287
            GeneTree:ENSGT00530000063021 GO:GO:0006564 GO:GO:0004617
            PANTHER:PTHR10996:SF20 TIGRFAMs:TIGR01327 EMBL:AADN02033884
            IPI:IPI00599090 ProteinModelPortal:E1C7Y3
            Ensembl:ENSGALT00000004729 OMA:FGVEQLP NextBio:20826719
            Uniprot:E1C7Y3
        Length = 525

 Score = 113 (44.8 bits), Expect = 0.00030, P = 0.00030
 Identities = 36/117 (30%), Positives = 60/117 (51%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             ++V+  A  + ++ R   G++ VD+DA T    K   ++   +GN+ S AEL+  ++L L
Sbjct:    61 ADVLEAAGRLQVVGRAGTGVDNVDVDAATR---KGVLVMNTPTGNSLSAAELTCGMILCL 117

Query:   130 LRKHIVPT----------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R+  +P                 G  L GKT+ + G G IG E+A R++ FG+K I
Sbjct:   118 ARQ--IPQAAASMKEGKWDRKKYMGMELNGKTLGVLGLGRIGREVATRMQAFGMKTI 172


>UNIPROTKB|O43175 [details] [associations]
            symbol:PHGDH "D-3-phosphoglycerate dehydrogenase"
            species:9606 "Homo sapiens" [GO:0051287 "NAD binding" evidence=IEA]
            [GO:0006541 "glutamine metabolic process" evidence=IEA] [GO:0006544
            "glycine metabolic process" evidence=IEA] [GO:0006566 "threonine
            metabolic process" evidence=IEA] [GO:0009448 "gamma-aminobutyric
            acid metabolic process" evidence=IEA] [GO:0010468 "regulation of
            gene expression" evidence=IEA] [GO:0019530 "taurine metabolic
            process" evidence=IEA] [GO:0021510 "spinal cord development"
            evidence=IEA] [GO:0021782 "glial cell development" evidence=IEA]
            [GO:0021915 "neural tube development" evidence=IEA] [GO:0022402
            "cell cycle process" evidence=IEA] [GO:0031175 "neuron projection
            development" evidence=IEA] [GO:0009055 "electron carrier activity"
            evidence=TAS] [GO:0007420 "brain development" evidence=TAS]
            [GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0006564 "L-serine
            biosynthetic process" evidence=TAS] [GO:0008652 "cellular amino
            acid biosynthetic process" evidence=TAS] [GO:0034641 "cellular
            nitrogen compound metabolic process" evidence=TAS] [GO:0044281
            "small molecule metabolic process" evidence=TAS]
            Reactome:REACT_111217 InterPro:IPR006139 InterPro:IPR006140
            InterPro:IPR006236 Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065
            PROSITE:PS00670 PROSITE:PS00671 InterPro:IPR016040 EMBL:AF006043
            GO:GO:0005829 GO:GO:0007420 DrugBank:DB00157 Gene3D:3.40.50.720
            GO:GO:0051287 EMBL:CH471122 GO:GO:0009055 GO:GO:0034641
            eggNOG:COG0111 GO:GO:0006564 EMBL:AL589734 KO:K00058
            UniPathway:UPA00135 GO:GO:0004617 CTD:26227 HOGENOM:HOG000136693
            HOVERGEN:HBG054241 OrthoDB:EOG4Q2DF9 PANTHER:PTHR10996:SF20
            TIGRFAMs:TIGR01327 EMBL:AF171237 EMBL:CR456795 EMBL:AK315360
            EMBL:AL139251 EMBL:BC000303 EMBL:BC001349 EMBL:BC011262
            IPI:IPI00011200 RefSeq:NP_006614.2 UniGene:Hs.487296 PDB:2G76
            PDBsum:2G76 ProteinModelPortal:O43175 SMR:O43175 IntAct:O43175
            MINT:MINT-4999739 STRING:O43175 PhosphoSite:O43175 PaxDb:O43175
            PeptideAtlas:O43175 PRIDE:O43175 DNASU:26227
            Ensembl:ENST00000369409 GeneID:26227 KEGG:hsa:26227 UCSC:uc001ehz.3
            GeneCards:GC01P120202 HGNC:HGNC:8923 HPA:CAB003681 HPA:HPA021241
            HPA:HPA024031 MIM:601815 MIM:606879 neXtProt:NX_O43175
            Orphanet:79351 PharmGKB:PA33264 InParanoid:O43175 OMA:TGVFDGY
            PhylomeDB:O43175 ChiTaRS:PHGDH EvolutionaryTrace:O43175
            GenomeRNAi:26227 NextBio:48383 ArrayExpress:O43175 Bgee:O43175
            CleanEx:HS_PHGDH Genevestigator:O43175 GermOnline:ENSG00000092621
            Uniprot:O43175
        Length = 533

 Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
 Identities = 36/115 (31%), Positives = 59/115 (51%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             ++VI  A  + ++ R   G++ VD++A T    K   ++   +GN+ S AEL+  +++ L
Sbjct:    61 ADVINAAEKLQVVGRAGTGVDNVDLEAATR---KGILVMNTPNGNSLSAAELTCGMIMCL 117

Query:   130 LRKHIVPT--------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R+    T              G  L GKT+ I G G IG E+A R++ FG+K I
Sbjct:   118 ARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTI 172


>UNIPROTKB|A5GFY8 [details] [associations]
            symbol:PHGDH "D-3-phosphoglycerate dehydrogenase"
            species:9823 "Sus scrofa" [GO:0031175 "neuron projection
            development" evidence=IEA] [GO:0022402 "cell cycle process"
            evidence=IEA] [GO:0021915 "neural tube development" evidence=IEA]
            [GO:0021782 "glial cell development" evidence=IEA] [GO:0021510
            "spinal cord development" evidence=IEA] [GO:0019530 "taurine
            metabolic process" evidence=IEA] [GO:0010468 "regulation of gene
            expression" evidence=IEA] [GO:0009448 "gamma-aminobutyric acid
            metabolic process" evidence=IEA] [GO:0006566 "threonine metabolic
            process" evidence=IEA] [GO:0006544 "glycine metabolic process"
            evidence=IEA] [GO:0006541 "glutamine metabolic process"
            evidence=IEA] [GO:0004617 "phosphoglycerate dehydrogenase activity"
            evidence=IEA] [GO:0006564 "L-serine biosynthetic process"
            evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA]
            InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
            Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00670
            PROSITE:PS00671 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0051287
            eggNOG:COG0111 GeneTree:ENSGT00530000063021 GO:GO:0006564
            EMBL:CR956647 KO:K00058 UniPathway:UPA00135 GO:GO:0004617 CTD:26227
            HOGENOM:HOG000136693 HOVERGEN:HBG054241 OrthoDB:EOG4Q2DF9
            PANTHER:PTHR10996:SF20 TIGRFAMs:TIGR01327 OMA:TGVFDGY
            RefSeq:NP_001116634.1 UniGene:Ssc.21431 ProteinModelPortal:A5GFY8
            SMR:A5GFY8 STRING:A5GFY8 Ensembl:ENSSSCT00000007358
            GeneID:100144529 KEGG:ssc:100144529 Uniprot:A5GFY8
        Length = 533

 Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
 Identities = 37/115 (32%), Positives = 58/115 (50%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             S+VI  A  + ++ R   G++ VD++A T    K   ++   +GN+ S AEL+  ++L L
Sbjct:    61 SDVINAAKKLQVVGRAGTGVDNVDLEAATR---KGILVMNTPNGNSLSAAELTCGMILCL 117

Query:   130 LRKHIVPT--------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R+    T              G  L GK + I G G IG E+A R++ FG+K I
Sbjct:   118 ARQIPQATASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTI 172


>TIGR_CMR|CHY_2698 [details] [associations]
            symbol:CHY_2698 "D-3-phosphoglycerate dehydrogenase"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS]
            [GO:0006564 "L-serine biosynthetic process" evidence=ISS]
            InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
            Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00671
            InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0051287 EMBL:CP000141
            GenomeReviews:CP000141_GR eggNOG:COG0111 GO:GO:0006564 KO:K00058
            GO:GO:0004617 HOGENOM:HOG000136693 PANTHER:PTHR10996:SF20
            TIGRFAMs:TIGR01327 ProtClustDB:PRK13581 OMA:RNIPQAT
            RefSeq:YP_361480.1 ProteinModelPortal:Q3A8Q4 STRING:Q3A8Q4
            GeneID:3727297 KEGG:chy:CHY_2698 PATRIC:21278419
            BioCyc:CHYD246194:GJCN-2696-MONOMER Uniprot:Q3A8Q4
        Length = 525

 Score = 112 (44.5 bits), Expect = 0.00041, P = 0.00041
 Identities = 36/115 (31%), Positives = 55/115 (47%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             + +I  A  + +I R  VG++ +D+ A +    K   ++    GN  + AE +  LM+ L
Sbjct:    55 ARIIEAAENLKIIGRAGVGVDNIDLAAASK---KGIIVVNSPEGNTIAAAEHTFALMMAL 111

Query:   130 LRK----HIVP----------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
             LR     H             TG  L GKTV I G G IG  +AKR++ F  ++I
Sbjct:   112 LRNIPQAHAALKEGKWLRKEFTGYELRGKTVGIIGLGRIGTAVAKRVKAFETRVI 166


>MGI|MGI:1355330 [details] [associations]
            symbol:Phgdh "3-phosphoglycerate dehydrogenase"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004617 "phosphoglycerate dehydrogenase activity"
            evidence=ISO;TAS] [GO:0006541 "glutamine metabolic process"
            evidence=IMP] [GO:0006544 "glycine metabolic process" evidence=IMP]
            [GO:0006563 "L-serine metabolic process" evidence=IMP] [GO:0006564
            "L-serine biosynthetic process" evidence=IEA] [GO:0006566
            "threonine metabolic process" evidence=IMP] [GO:0008152 "metabolic
            process" evidence=IEA] [GO:0008652 "cellular amino acid
            biosynthetic process" evidence=IEA] [GO:0009448 "gamma-aminobutyric
            acid metabolic process" evidence=IMP] [GO:0010468 "regulation of
            gene expression" evidence=IMP] [GO:0016491 "oxidoreductase
            activity" evidence=IEA] [GO:0016616 "oxidoreductase activity,
            acting on the CH-OH group of donors, NAD or NADP as acceptor"
            evidence=IEA] [GO:0019530 "taurine metabolic process" evidence=IMP]
            [GO:0021510 "spinal cord development" evidence=IMP] [GO:0021782
            "glial cell development" evidence=IMP] [GO:0021915 "neural tube
            development" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0022402 "cell cycle process" evidence=IMP] [GO:0031175 "neuron
            projection development" evidence=IMP] [GO:0048037 "cofactor
            binding" evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA]
            [GO:0055114 "oxidation-reduction process" evidence=ISO;TAS]
            InterPro:IPR006139 InterPro:IPR006140 InterPro:IPR006236
            Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00670
            PROSITE:PS00671 InterPro:IPR016040 MGI:MGI:1355330
            Gene3D:3.40.50.720 GO:GO:0051287 GO:GO:0021510 GO:GO:0021915
            GO:GO:0031175 GO:GO:0010468 GO:GO:0006541 GO:GO:0006544
            GO:GO:0019530 GO:GO:0022402 eggNOG:COG0111
            GeneTree:ENSGT00530000063021 GO:GO:0006564 GO:GO:0009448
            GO:GO:0021782 GO:GO:0006563 GO:GO:0006566 KO:K00058
            UniPathway:UPA00135 GO:GO:0004617 CTD:26227 HOGENOM:HOG000136693
            HOVERGEN:HBG054241 OrthoDB:EOG4Q2DF9 PANTHER:PTHR10996:SF20
            TIGRFAMs:TIGR01327 OMA:TGVFDGY EMBL:AB128936 EMBL:AK076815
            EMBL:AK169684 EMBL:BC086668 EMBL:BC110673 EMBL:L21027
            IPI:IPI00225961 RefSeq:NP_058662.2 UniGene:Mm.16898
            UniGene:Mm.371997 ProteinModelPortal:Q61753 SMR:Q61753
            IntAct:Q61753 STRING:Q61753 PhosphoSite:Q61753
            COMPLUYEAST-2DPAGE:Q61753 REPRODUCTION-2DPAGE:IPI00225961
            REPRODUCTION-2DPAGE:Q61753 SWISS-2DPAGE:Q61753 PaxDb:Q61753
            PRIDE:Q61753 Ensembl:ENSMUST00000065793 GeneID:236539
            KEGG:mmu:236539 UCSC:uc008qps.1 InParanoid:Q61753 NextBio:382995
            Bgee:Q61753 CleanEx:MM_PHGDH Genevestigator:Q61753
            GermOnline:ENSMUSG00000053398 Uniprot:Q61753
        Length = 533

 Score = 112 (44.5 bits), Expect = 0.00042, P = 0.00042
 Identities = 35/115 (30%), Positives = 59/115 (51%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             ++VI  A  + ++ R   G++ VD++A T    K   ++   +GN+ S AEL+  +++ L
Sbjct:    61 ADVINAAEKLQVVGRAGTGVDNVDLEAATR---KGILVMNTPNGNSLSAAELTCGMIMCL 117

Query:   130 LRKHIVPT--------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R+    T              G  L GKT+ I G G IG E+A R++ FG+K +
Sbjct:   118 ARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTV 172


>POMBASE|SPACUNK4.10 [details] [associations]
            symbol:SPACUNK4.10 "glyoxylate reductase (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006111
            "regulation of gluconeogenesis" evidence=IC] [GO:0009436
            "glyoxylate catabolic process" evidence=ISO] [GO:0047964
            "glyoxylate reductase activity" evidence=ISO] [GO:0051287 "NAD
            binding" evidence=IEA] InterPro:IPR006139 InterPro:IPR006140
            Pfam:PF00389 Pfam:PF02826 PROSITE:PS00065 PROSITE:PS00670
            PROSITE:PS00671 InterPro:IPR016040 PomBase:SPACUNK4.10
            GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 Gene3D:3.40.50.720
            GO:GO:0051287 GO:GO:0006111 GO:GO:0009436 eggNOG:COG1052
            HOGENOM:HOG000136700 OrthoDB:EOG4MWCG7 GO:GO:0047964 EMBL:D89185
            PIR:T41705 PIR:T42743 RefSeq:NP_593968.1 ProteinModelPortal:O14075
            STRING:O14075 EnsemblFungi:SPACUNK4.10.1 GeneID:2542594
            KEGG:spo:SPACUNK4.10 OMA:ITNISRT NextBio:20803643 Uniprot:O14075
        Length = 334

 Score = 108 (43.1 bits), Expect = 0.00062, P = 0.00062
 Identities = 44/160 (27%), Positives = 73/160 (45%)

Query:    32 YAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITRANP-MNLIIRFRVGLE 90
             Y+ G  +++L+ K    F ++ ++  +Y +   M   D  +I    P +  I     G E
Sbjct:    34 YSDGTREDFLA-KCKTEFQNVKAICRTYNSKFYMGIFDKEIIDNLPPSVKFICHLGAGYE 92

Query:    91 GVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLR---------------KHIV 135
              VD+ A T   I+ + +   V     + A++ I+LMLG LR                +  
Sbjct:    93 TVDVAACTARGIQVSHVPKAVDD---ATADVGIFLMLGALRGFNQGIFELHKNNWNANCK 149

Query:   136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
             P+ +   GKT+ I G G IG  +AKR R F +KI+   R+
Sbjct:   150 PSHDPE-GKTLGILGLGGIGKTMAKRARAFDMKIVYHNRT 188


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      189       189   0.00089  110 3  11 22  0.40    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  12
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.62u 0.09s 14.71t   Elapsed:  00:00:01
  Total cpu time:  14.62u 0.10s 14.72t   Elapsed:  00:00:01
  Start:  Sat May 11 06:24:54 2013   End:  Sat May 11 06:24:55 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
