BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044056
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 50 LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
LS L A E +I + +VI A + ++ R G++ VD++A T K
Sbjct: 56 LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 112
Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
++ +GN+ S AEL+ +++ L R+ T G L GKT+ I G
Sbjct: 113 ILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 172
Query: 151 FGNIGVELAKRLRPFGVKII 170
G IG E+A R++ FG+K I
Sbjct: 173 LGRIGREVATRMQSFGMKTI 192
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 33/176 (18%)
Query: 37 LQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITR-----ANPMNLIIRFRVGLEG 91
L+ Y ++ + + S L G + +I S + ITR A + +I G +
Sbjct: 19 LKKYADVE-IILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDN 77
Query: 92 VDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK-HI---------------V 135
+D++ T I ++ G +S + AE ++ L++ L+RK H +
Sbjct: 78 IDLEEATKRGIYVTKVSGLLS---EAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKI 134
Query: 136 PTG----ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSS 187
TG E+L GK V I G G IG +A+RL PFGVK+ W+ H +V +
Sbjct: 135 WTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLY----YWSRHRKVNVEKE 186
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 71 NVITRANPMNL--IIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
VI R P N+ I + +G + +D+DA C + ++ G + AE+++ L+LG
Sbjct: 59 EVIDRI-PENIKCISTYSIGFDHIDLDA---CKARGIKVGNAPHGVTVATAEIAMLLLLG 114
Query: 129 ----------LLRKHIVP-------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
++R P GE L KT+ I GFG+IG LAKR + F + I
Sbjct: 115 SARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDI 172
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 73 ITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK 132
I +A + L++ VG + +D+D + K + +L N S AE + ML L+R
Sbjct: 80 IDKAKKLKLVVVAGVGSDHIDLDYINQTGKKIS-VLEVTGSNVVSVAEHVVMTMLVLVR- 137
Query: 133 HIVPTGETLL-----------------GKTVFISGFGNIGVELAKRLRPFGVK 168
+ VP E ++ GKT+ G G IG + +RL PF K
Sbjct: 138 NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPK 190
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 73 ITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK 132
I +A + L++ VG + +D+D + K + +L N S AE + ML L+R
Sbjct: 79 IDKAKKLKLVVVAGVGSDHIDLDYINQTGKKIS-VLEVTGSNVVSVAEHVVMTMLVLVR- 136
Query: 133 HIVPTGETLL-----------------GKTVFISGFGNIGVELAKRLRPFGVK 168
+ VP E ++ GKT+ G G IG + +RL PF K
Sbjct: 137 NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPK 189
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
+VI + + +I R +GL+ +D + IK G + S EL+I LM+
Sbjct: 60 KDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPG---ASTDSAVELTIGLMIAA 116
Query: 130 LRKHIVP------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
RK G L GKT+ I GFG IG ++ G+K++A
Sbjct: 117 ARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLA 170
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALT-------NCAIKAARILGDVSGNAASCAEL 121
D+ V+ A + ++ R VGL+ VD+DA T N + + A
Sbjct: 57 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 116
Query: 122 SIYLMLGLLRKHIVP----TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
I LR+H +G + GKTV + G G IG +A+R+ FG ++A
Sbjct: 117 QIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 170
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALT-------NCAIKAARILGDVSGNAASCAEL 121
D+ V+ A + ++ R VGL+ VD+DA T N + + A
Sbjct: 56 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 115
Query: 122 SIYLMLGLLRKHIVP----TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
I LR+H +G + GKTV + G G IG +A+R+ FG ++A
Sbjct: 116 QIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 169
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 20/141 (14%)
Query: 50 LSMHSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILG 109
L S+ A G S +D+ +I + ++ F VGL+ VD L C K R+
Sbjct: 61 LQAESIRAVVGNSNA--GADAELIDALPKLEIVSSFSVGLDKVD---LIKCEEKGVRVTN 115
Query: 110 DVSGNAASCAELSIYLMLGLLRK-----HIVPTG----------ETLLGKTVFISGFGNI 154
A+L+I L+L +LR+ V G GK V I G G I
Sbjct: 116 TPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRI 175
Query: 155 GVELAKRLRPFGVKIIAAKRS 175
G+ +A+R F I RS
Sbjct: 176 GLAVAERAEAFDCPISYFSRS 196
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 139 ETLLGKTVFISGFGNIGVELAKRL-RPFGVKIIAAKRS 175
+TL GKT+ I G+GN G LAK + FG+K++A S
Sbjct: 208 DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS 245
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 122 SIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
S+Y + +++ +TL+GKTV ++GFGN+ AK+L G K +
Sbjct: 213 SVYYVEAVMKHE----NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAV 257
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 122 SIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
S+Y + +++ +TL+GKTV ++GFGN+ AK+L G K +
Sbjct: 213 SVYYVEAVMKHE----NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAV 257
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 122 SIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
S+Y + +++ +TL+GKTV ++GFGN+ AK+L G K +
Sbjct: 213 SVYYVEAVMKHE----NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAV 257
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 87 VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI-----VPTGE-- 139
+G + +D+ A + A + G N S AE + +L L+R + V GE
Sbjct: 101 IGSDHIDLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 157
Query: 140 ---------TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR 174
L GKT+ G G IG L +RL+PFG ++ R
Sbjct: 158 VAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDR 201
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 87 VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI-----VPTGE-- 139
+G + +D+ A + A + G N S AE + +L L+R + V GE
Sbjct: 95 IGSDHIDLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 151
Query: 140 ---------TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR 174
L GKT+ G G IG L +RL+PFG ++ R
Sbjct: 152 VAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDR 195
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 70 SNVITRANP-MNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
+ VI + P + I VG + +D A + IK DV +A CAE++ L+L
Sbjct: 85 AEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHT-PDVLSDA--CAEIAXLLVLN 141
Query: 129 LLRKHIV--------------PT---GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
R+ PT G L G+ + I G G IG +A R R FG+ I
Sbjct: 142 ACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHY 201
Query: 172 AKRSWASHS 180
R+ SH+
Sbjct: 202 HNRTRLSHA 210
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 26/110 (23%)
Query: 79 MNLIIRFRVGLEGVDIDALTNCAIK---AARILGDVSGNAASCAELSIYLMLGLLR---- 131
+ +I VG++ + +D + I+ +L D + AEL++ L+L R
Sbjct: 77 LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTT------AELAVSLLLTTCRRLPE 130
Query: 132 -------------KHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVK 168
K + G L TV I G G IG +A+RL+PFGV+
Sbjct: 131 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 180
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVK 168
G L TV I G G IG +A+RL+PFGV+
Sbjct: 148 GYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 178
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 22/88 (25%)
Query: 115 AASCAELSIYLMLGLLRK----------------HIVPTGETLLGKTVFISGFGNIGVEL 158
A A+L I L L +LR+ +P G + GK + + G G IG L
Sbjct: 127 ADDVADLGIALXLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRAL 186
Query: 159 AKRLRPFGVKIIAAKRS------WASHS 180
A R FG + RS W +H
Sbjct: 187 ASRAEAFGXSVRYWNRSTLSGVDWIAHQ 214
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 138 GETLLGKTVFISGFGNIGVELAKRL-RPFGVKIIA 171
G L GKT+ I G+GN G +AK + +G+K++A
Sbjct: 206 GMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVA 240
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178
KT + GFGN+G+ + L FG K IA S S
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGS 274
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178
KT + GFGN+G+ + L FG K IA S S
Sbjct: 249 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGS 283
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178
KT + GFGN+G+ + L FG K IA S S
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGS 274
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 112 SGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
SGN + IY + K ++L GKTV + G GN+ L + L G K+I
Sbjct: 143 SGNPSPVTAYGIYYGMKAAAKEAFGD-DSLAGKTVAVQGVGNVAYALCEYLHEEGAKLI 200
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 81 LIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLR-----KHIV 135
L IR VG + +D+ A+ I+ + + + + A+ AE ++ L LLR + +
Sbjct: 72 LTIR-NVGTDNIDMTAMKQYGIRLSNV---PAYSPAAIAEFALTDTLYLLRNMGKVQAQL 127
Query: 136 PTGE-----TLLGK-----TVFISGFGNIGVELAKRLRPFGVKIIA 171
G+ T +GK TV + G G+IG K + FG K+IA
Sbjct: 128 QAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA 173
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
+ L G+T+ I G G+IG +A + FG+K++ RS
Sbjct: 136 QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRS 172
>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
T + GK ++G+G++G A+ LR FG ++I
Sbjct: 207 TDVXIAGKVAVVAGYGDVGKGCAQALRGFGARVI 240
>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
Length = 435
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
T + GK ++G+G++G A+ LR FG ++I
Sbjct: 210 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVI 243
>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
Neplanocin
Length = 432
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
T + GK ++G+G++G A+ LR FG ++I
Sbjct: 207 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVI 240
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
T + GK ++G+G++G A+ LR FG ++I
Sbjct: 206 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVI 239
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
T + GK ++G+G++G A+ LR FG ++I
Sbjct: 206 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVI 239
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
T + GK ++G+G++G A+ LR FG ++I
Sbjct: 206 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVI 239
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 143 GKTVFISGFGNIGVELAKRLRPFGVKIIA 171
GKTV I G GN+G A L G K+IA
Sbjct: 210 GKTVAIQGMGNVGRWTAYWLEKMGAKVIA 238
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173
+ GKT + G+G++G A LR FG +++ +
Sbjct: 210 IAGKTCCVCGYGDVGKGCAAALRAFGARVVVTE 242
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 146 VFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
+ I+G G++G+ELA+RL G ++ +RS
Sbjct: 6 ILIAGCGDLGLELARRLTAQGHEVTGLRRS 35
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178
KT + GFGN+G+ + L FG K +A S S
Sbjct: 245 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGS 279
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178
KT + GFGN+G+ + L FG K +A S S
Sbjct: 245 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGS 279
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173
+ GKT + G+G++G A LR FG +++ +
Sbjct: 209 IAGKTACVCGYGDVGKGCAAALRGFGARVVVTE 241
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 77 NPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVP 136
P+N + G + VD L I + G NA + E +L L +
Sbjct: 60 TPINFVGTATAGTDHVDEAWLKQAGIGFSAAPG---CNAIAVVEYVFSALLXLAERD--- 113
Query: 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
G +L +T+ I G GN+G L RL G++ +
Sbjct: 114 -GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTL 146
>pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
pdb|3SC4|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
Length = 285
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 136 PTGETLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSWASHSQV 182
P +L GKT+FISG IG+ +AKR+ G + +S H ++
Sbjct: 2 PGSMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKL 49
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178
KT + GFGN+G+ + L FG K I S S
Sbjct: 245 KTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGS 279
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 28.5 bits (62), Expect = 2.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 91 GVDIDALTNCAIKAARILGDVSGNAASCAE 120
G DI + N A + R+L +V+G+A + AE
Sbjct: 692 GADIHEIDNAASRCGRLLDEVAGDADAVAE 721
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 22/112 (19%)
Query: 79 MNLIIRFRVGLEGVDIDA-----LTNCAIKAARILGDVSGNAASCAELSIY----LMLGL 129
+ +I+R G + VDI A + C I +A + + + ++ C L++Y +
Sbjct: 70 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAV--EETADSTICHILNLYRRNTWLYQA 127
Query: 130 LR-----------KHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
LR + + + G+T+ + GFG G +A R + FG +I
Sbjct: 128 LREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVI 179
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 144 KTVFISGFGNIGVELAKRLRPFGVKI 169
K V I G G IG+ELA LR FG ++
Sbjct: 167 KRVAIIGAGYIGIELAGLLRSFGSEV 192
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 22/112 (19%)
Query: 79 MNLIIRFRVGLEGVDIDALTN-----CAIKAARILGDVSGNAASCAELSIYLMLGLLR-- 131
+ +I+R G + +DI + + C + AA + + + ++ C L++Y L
Sbjct: 89 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV--EETADSTLCHILNLYRRTTWLHQA 146
Query: 132 -------------KHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
+ + + G+T+ I G G +G +A R + FG ++
Sbjct: 147 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVL 198
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 123 IYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
+Y +L++H G G V +SG GN+ ++ FG ++I A S
Sbjct: 219 VYFTEAMLKRH----GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDS 267
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 22/112 (19%)
Query: 79 MNLIIRFRVGLEGVDIDALTN-----CAIKAARILGDVSGNAASCAELSIYLMLGLLR-- 131
+ +I+R G + +DI + + C + AA + + + ++ C L++Y L
Sbjct: 89 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV--EETADSTLCHILNLYRRTTWLHQA 146
Query: 132 -------------KHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
+ + + G+T+ I G G +G +A R + FG ++
Sbjct: 147 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVL 198
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 123 IYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
+Y +L++H G G V +SG GN+ ++ FG ++I A S
Sbjct: 216 VYFTEAMLKRH----GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDS 264
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 123 IYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
+Y +L++H G G V +SG GN+ ++ FG ++I A S
Sbjct: 216 VYFTEAMLKRH----GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDS 264
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
G + G V + GFGN G LAK + G K++
Sbjct: 215 GIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVV 247
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 123 IYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
+Y +L++H G G V +SG GN+ ++ FG ++I A S
Sbjct: 215 VYFTEAMLKRH----GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDS 263
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 22/112 (19%)
Query: 79 MNLIIRFRVGLEGVDIDALTN-----CAIKAARILGDVSGNAASCAELSIYLMLGLLR-- 131
+ +I+R G + +DI + + C + AA + + + ++ C L++Y L
Sbjct: 86 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV--EETADSTLCHILNLYRRATWLHQA 143
Query: 132 -------------KHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
+ + + G+T+ I G G +G +A R + FG ++
Sbjct: 144 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVL 195
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 112 SGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
SGN + +Y + K + ++L G V + G GN+ L K+L G K++
Sbjct: 143 SGNPSPVTAYGVYRGMKAAAKEAFGS-DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLV 200
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
Query: 73 ITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK 132
I +A + L + +G + VD+ + + + A + N+ S AE + ++L L+R
Sbjct: 108 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVRN 164
Query: 133 HIVPTGE-----------------TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR 174
++ P+ E L V G IG+ + +RL PF V + R
Sbjct: 165 YL-PSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 222
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 29/139 (20%)
Query: 53 HSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVS 112
+ +Y T E+ I +A + L + +G + VD+ + + + A +
Sbjct: 97 QPFWPAYLTPER--------IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TY 145
Query: 113 GNAASCAELSIYLMLGLLRKHIVPTGE-----------------TLLGKTVFISGFGNIG 155
N+ S AE + ++L L+R ++ P+ E L V G IG
Sbjct: 146 CNSISVAEHVVMMILSLVRNYL-PSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIG 204
Query: 156 VELAKRLRPFGVKIIAAKR 174
+ + +RL PF V + R
Sbjct: 205 LAVLRRLAPFDVHLHYTDR 223
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 29/139 (20%)
Query: 53 HSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVS 112
+ +Y T E+ I +A + L + +G + VD+ + + + A +
Sbjct: 97 QPFWPAYLTPER--------IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TY 145
Query: 113 GNAASCAELSIYLMLGLLRKHIVPTGE-----------------TLLGKTVFISGFGNIG 155
N+ S AE + ++L L+R ++ P+ E L V G IG
Sbjct: 146 CNSISVAEHVVMMILSLVRNYL-PSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIG 204
Query: 156 VELAKRLRPFGVKIIAAKR 174
+ + +RL PF V + R
Sbjct: 205 LAVLRRLAPFDVHLHYTDR 223
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
G L G+T+ I G+G IG +A R FG+ ++ R
Sbjct: 155 GRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRE 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,229,936
Number of Sequences: 62578
Number of extensions: 190048
Number of successful extensions: 572
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 80
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)