BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044056
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH
PE=2 SV=4
Length = 533
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 50 LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
LS L A E +I + +VI A + ++ R G++ VD++A T K
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92
Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
++ +GN+ S AEL+ +++ L R+ T G L GKT+ I G
Sbjct: 93 VLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152
Query: 151 FGNIGVELAKRLRPFGVKII 170
G IG E+A R++ FG+K I
Sbjct: 153 LGRIGREVATRMQSFGMKTI 172
>sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh
PE=1 SV=3
Length = 533
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 50 LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
LS L A E +I + +VI A + ++ R G++ VD++A T K
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92
Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
++ +GN+ S AEL+ +++ L R+ T G L GKT+ I G
Sbjct: 93 VLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILG 152
Query: 151 FGNIGVELAKRLRPFGVKII 170
G IG E+A R++ FG+K +
Sbjct: 153 LGRIGREVAARMQAFGMKTV 172
>sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1
SV=4
Length = 533
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 50 LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
LS L A E +I + +VI A + ++ R G++ VD++A T K
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92
Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
++ +GN+ S AEL+ +++ L R+ T G L GKT+ I G
Sbjct: 93 ILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152
Query: 151 FGNIGVELAKRLRPFGVKII 170
G IG E+A R++ FG+K I
Sbjct: 153 LGRIGREVATRMQSFGMKTI 172
>sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2
SV=1
Length = 533
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 50 LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
LS L A E +I + +VI A + ++ R G++ VD++A T K
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92
Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
++ +GN+ S AEL+ +++ L R+ T G L GKT+ I G
Sbjct: 93 ILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152
Query: 151 FGNIGVELAKRLRPFGVKII 170
G IG E+A R++ FG+K I
Sbjct: 153 LGRIGREVATRMQSFGMKTI 172
>sp|A5GFY8|SERA_PIG D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1
Length = 533
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 22/140 (15%)
Query: 50 LSMHSLYASYGTSEQMIASD-----SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
LS L A E +I S+VI A + ++ R G++ VD++A T K
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATR---KG 92
Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
++ +GN+ S AEL+ ++L L R+ T G L GK + I G
Sbjct: 93 ILVMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKKFMGTELNGKVLGILG 152
Query: 151 FGNIGVELAKRLRPFGVKII 170
G IG E+A R++ FG+K I
Sbjct: 153 LGRIGREVATRMQSFGMKTI 172
>sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1
SV=3
Length = 533
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 50 LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
LS L A E +I + +VI A + ++ R G++ VD++A T K
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92
Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
++ +GN+ S AEL+ +++ L R+ T G L GKT+ I G
Sbjct: 93 ILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILG 152
Query: 151 FGNIGVELAKRLRPFGVKII 170
G IG E+A R++ FG+K +
Sbjct: 153 LGRIGREVATRMQSFGMKTV 172
>sp|Q5EAD2|SERA_BOVIN D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3
Length = 533
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 26/142 (18%)
Query: 50 LSMHSLYASYGTSEQMIASD-----SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
LS L A E +I S++I A + ++ R G++ VD++A T K
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTSDIINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92
Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT----------------GETLLGKTVFI 148
++ +GN+ S AEL+ +++ L R+ +P G L GK + I
Sbjct: 93 ILVMNTPNGNSLSAAELTCGMIMCLARQ--IPQAAASMKDGKWERKKFMGTELNGKVLGI 150
Query: 149 SGFGNIGVELAKRLRPFGVKII 170
G G IG E+A R++ FG+K I
Sbjct: 151 LGLGRIGREVATRMQSFGMKTI 172
>sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=serA PE=3 SV=1
Length = 527
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
D+ VI A + +I R VG++ +DI+A T I G GN S AE +I LML
Sbjct: 54 DAEVIQAAKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPG---GNTISTAEHAIALMLA 110
Query: 129 LLRKHIVPTGE----------------TLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
RK +P + L GKT + G G +G E+AKR + + ++A
Sbjct: 111 AARK--IPQADRSVKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLA 167
>sp|Q5R7M2|SERA_PONAB D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2
SV=3
Length = 533
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 22/140 (15%)
Query: 50 LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
LS L A E +I + +VI A + ++ R G++ VD++A T K
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92
Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
++ +GN+ S AEL+ +++ L R+ T G L GKT+ I G
Sbjct: 93 ILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152
Query: 151 FGNIGVELAKRLRPFGVKII 170
G IG E+A R++ G+K I
Sbjct: 153 LGRIGREVAIRMQSLGMKTI 172
>sp|Q58424|SERA_METJA D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=serA PE=3 SV=1
Length = 524
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 21/116 (18%)
Query: 71 NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLL 130
+VI +A + +I R VG++ +D++A T K ++ ++ S AEL++ LML
Sbjct: 56 DVIEKAEKLKVIGRAGVGVDNIDVEAATE---KGIIVVNAPDASSISVAELTMGLMLAAA 112
Query: 131 RKHIVPT----------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
R +P G L GKT+ + G G IG ++ KR + FG+ II
Sbjct: 113 RN--IPQATASLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNII 166
>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR
PE=3 SV=1
Length = 339
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 23/128 (17%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
D+ V+ A + +I + VG + +DI T I G ++ + AE ++ L+L
Sbjct: 60 DAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTD---AVAEFTVGLILA 116
Query: 129 LLRK-----HIVPTGE-------------TLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
+ R+ I+ TG+ L GKT+ + G G IGV AKRL F VKI+
Sbjct: 117 VTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRLSSFDVKIL 176
Query: 171 --AAKRSW 176
+R W
Sbjct: 177 YYDIERRW 184
>sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain
168) GN=serA PE=3 SV=3
Length = 525
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 21/134 (15%)
Query: 51 SMHSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGD 110
+H+ A S + D + + + ++ R VG++ +DID T + ++
Sbjct: 37 ELHTFDALLVRSATKVTED--LFNKMTSLKIVGRAGVGVDNIDIDEATKHGVI---VINA 91
Query: 111 VSGNAASCAELSIYLMLGLLRKHIVP---------------TGETLLGKTVFISGFGNIG 155
+GN S AE + + M+ L +HI G L GKT+ I G G IG
Sbjct: 92 PNGNTISTAEHT-FAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIG 150
Query: 156 VELAKRLRPFGVKI 169
E+A+R R FG+ +
Sbjct: 151 SEIAQRARAFGMTV 164
>sp|P36234|DHGY_HYPME Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2
Length = 322
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 71 NVITRANPMNL--IIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
VI R P N+ I + +G + +D+DA C + ++ G + AE+++ L+LG
Sbjct: 61 EVIDRI-PENIKCISTYSIGFDHIDLDA---CKARGIKVGNAPHGVTVATAEIAMLLLLG 116
Query: 129 ----------LLRKHIVP-------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
++R P GE L KT+ I GFG+IG LAKR + F + I
Sbjct: 117 SARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDI 174
>sp|Q2S0U3|PDXB_SALRD Erythronate-4-phosphate dehydrogenase OS=Salinibacter ruber (strain
DSM 13855 / M31) GN=pdxB PE=3 SV=1
Length = 392
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 77 NPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVP 136
P+ + +G + VD D L I A G NA S A+ + +LGL R+
Sbjct: 60 TPLRFVGSATIGTDHVDRDYLRAQGIPFAHAPG---SNADSVADYVVAALLGLARRR--- 113
Query: 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
G L +TV I G GNIG LA+RL G++++
Sbjct: 114 -GGALEERTVGIVGCGNIGGRLARRLSALGMEVL 146
>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1
Length = 333
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 24/128 (18%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
DS V A + ++ + VG + +D++ T I DV +A A+ + L+L
Sbjct: 58 DSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNT-PDVLTDA--TADFAWTLLLA 114
Query: 129 LLRK-----HIVPTGE----------------TLLGKTVFISGFGNIGVELAKRLRPFGV 167
R+ H +GE + GKT+ I GFG IG +A+R R FG+
Sbjct: 115 TARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARRARGFGM 174
Query: 168 KIIAAKRS 175
+I+ RS
Sbjct: 175 RILYYSRS 182
>sp|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis
thaliana GN=At1g17745 PE=1 SV=2
Length = 624
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 48 FFLSMHSLYASYGTSEQMIASDSNVITRA------NPMNLIIRFRVGLEGVDIDALTN-- 99
+ LS L S+ +I +TR + ++ R VG++ VD+ A T
Sbjct: 109 YDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHG 168
Query: 100 CAIKAARILGDVSGNAASCAELSIYLMLGLLR-----------------KHIVPTGETLL 142
C + A + N + AE I L+ + R K++ G +L+
Sbjct: 169 CLVVNAP-----TANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYV---GVSLV 220
Query: 143 GKTVFISGFGNIGVELAKRLRPFGVKIIA 171
GKT+ + GFG +G E+A+R + G+ +I+
Sbjct: 221 GKTLAVMGFGKVGTEVARRAKGLGMTVIS 249
>sp|O27051|SERA_METTH D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=serA PE=3 SV=1
Length = 525
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 71 NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLL 130
VI A + +I R VG++ VD+ A T+ I ++ + + AE SI LML L
Sbjct: 58 EVIEAAPRLKIIARAGVGVDNVDVKAATDRGI---MVINAPESTSITVAEHSIGLMLALA 114
Query: 131 RKHIVPT--------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
RK + G L GKT+ I G G IG ++ R + FG+ I+
Sbjct: 115 RKIAIADRSVKEGKWEKNRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIM 168
>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1
Length = 331
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 18/131 (13%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAAS----------- 117
D ++ A + +I ++ VG + +DI+ T I G ++ A
Sbjct: 58 DKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVAR 117
Query: 118 -CAELSIYLMLGLLRKHIV---PT---GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
E ++ G +K V P G L GKT+ I GFG IG LAKR + FG+KII
Sbjct: 118 RIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKII 177
Query: 171 AAKRSWASHSQ 181
R+ ++
Sbjct: 178 YYSRTRKPEAE 188
>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1)
GN=gyaR PE=3 SV=1
Length = 334
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 24/128 (18%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
D+ V A + ++ + VG + +DI+ T + DV NA A+++ L+L
Sbjct: 58 DAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNT-PDVLTNA--TADMAWVLLLA 114
Query: 129 LLRKHI-----VPTGE----------------TLLGKTVFISGFGNIGVELAKRLRPFGV 167
R+ I V +GE + G+T+ I GFG IG +A+R + FG+
Sbjct: 115 TARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGM 174
Query: 168 KIIAAKRS 175
+I+ R+
Sbjct: 175 RILYNSRT 182
>sp|Q084S1|PDXB_SHEFN Erythronate-4-phosphate dehydrogenase OS=Shewanella frigidimarina
(strain NCIMB 400) GN=pdxB PE=3 SV=1
Length = 378
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
++ +I A+ + + +G + VD+D L+ I G NA + E + ML
Sbjct: 50 NAELIKDAHKLKFVGSATIGTDHVDVDYLSLRNIYFTNAPG---CNATAVGEYAFIAMLE 106
Query: 129 LLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
L ++ GE+L GK V I G GN G AK ++ +G+K++
Sbjct: 107 LAQRF----GESLAGKVVGIVGAGNTGTAAAKCMQAYGLKVL 144
>sp|Q67U69|FDH2_ORYSJ Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os06g0486900 PE=2 SV=1
Length = 378
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 73 ITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK 132
I +A + L++ VG + +D+ A + A I G N S AE + +L LLR
Sbjct: 108 IKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITG---SNTVSVAEDQLMRILLLLRN 164
Query: 133 -----HIVPTGE-----------TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR 174
H + GE L GKTV G G IG L +RL+PF ++ R
Sbjct: 165 FLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLMYHDR 222
>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1
Length = 336
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 26/135 (19%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
D V A + ++ + VG + +D++ T I DV NA A+ + L+L
Sbjct: 58 DQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTNT-PDVLTNA--TADHAFALLLA 114
Query: 129 LLRKHIVP----------------------TGETLLGKTVFISGFGNIGVELAKRLRPFG 166
R H+V G L GKT+ I GFG IG +A+R + F
Sbjct: 115 TAR-HVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIARRAKGFN 173
Query: 167 VKIIAAKRSWASHSQ 181
++I+ R+ S ++
Sbjct: 174 MRILYYSRTRKSQAE 188
>sp|O33116|SERA_MYCLE D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae (strain
TN) GN=serA PE=3 SV=1
Length = 528
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALT-------NCAIKAARILGDVSGNAASCAEL 121
D+ V+ A + ++ R VGL+ VD+DA T N + + A
Sbjct: 56 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 115
Query: 122 SIYLMLGLLRKHIVP----TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
I LR HI +G + GKTV + G G IG +A R+ FG +IA
Sbjct: 116 QIAEADASLRAHIWKRSSFSGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIA 169
>sp|Q1QWN6|SLCC_CHRSD (S)-sulfolactate dehydrogenase OS=Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=slcC
PE=1 SV=1
Length = 309
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
D ++ R + + R VGL+ +D+DA I +L GN S AE + +
Sbjct: 56 DRELLARFPDLRAVGRLGVGLDNIDVDACRESDIA---VLPATGGNTVSVAEYVLTGIFM 112
Query: 129 LLRKHIVPTGETLLGK--------------TVFISGFGNIGVELAKRLRPFGVKIIA 171
L R + T L G+ T+ + GFG I +LA+R + G++++A
Sbjct: 113 LRRGAYLSTPRVLAGEWPRQALMGHETQGATLGLVGFGGIARDLARRAQCLGMQVMA 169
>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2
Length = 335
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 24/128 (18%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
D +++++A + ++ + VG + +D++ T I G ++ + AE + L+L
Sbjct: 59 DCDLLSQAPRLRIVAQMAVGFDNIDVECATRLGIYVTNTPGVLT---EATAEFTWALILA 115
Query: 129 LLRK-----HIVPTGE----------------TLLGKTVFISGFGNIGVELAKRLRPFGV 167
R+ H V GE L GKT+ I G G IG +A+ + FG+
Sbjct: 116 AARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGM 175
Query: 168 KIIAAKRS 175
+II RS
Sbjct: 176 RIIYHSRS 183
>sp|O13437|FDH_CANBO Formate dehydrogenase OS=Candida boidinii GN=FDH1 PE=1 SV=1
Length = 364
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 73 ITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK 132
+ +A + L++ VG + +D+D + K + +L N S AE + ML L+R
Sbjct: 79 LDKAKNLKLVVVAGVGSDHIDLDYINQTGKKIS-VLEVTGSNVVSVAEHVVMTMLVLVR- 136
Query: 133 HIVPTGETLL-----------------GKTVFISGFGNIGVELAKRLRPFGVK 168
+ VP E ++ GKT+ G G IG + +RL PF K
Sbjct: 137 NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNPK 189
>sp|Q07511|FDH_SOLTU Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1
PE=1 SV=2
Length = 381
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 55 LYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGN 114
+ +Y T+E+ I +A + L++ +G + VD+ A + A + G N
Sbjct: 101 FHPAYVTAER--------IKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTG---SN 149
Query: 115 AASCAELSIYLMLGLLRK-----HIVPTGE-----------TLLGKTVFISGFGNIGVEL 158
S AE + +L L+R H V GE L GKTV G G IG L
Sbjct: 150 TVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLL 209
Query: 159 AKRLRPFGVKIIAAKR 174
+RL+PF ++ R
Sbjct: 210 LQRLKPFNCNLLYHDR 225
>sp|A3QFC7|PDXB_SHELP Erythronate-4-phosphate dehydrogenase OS=Shewanella loihica (strain
ATCC BAA-1088 / PV-4) GN=pdxB PE=3 SV=1
Length = 376
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 87 VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTV 146
+G++ +D+D L I G NA + E + ML L R+ P L GKTV
Sbjct: 68 IGMDHLDLDYLKQRGIFCTNAPG---CNAVAVGEYAFNAMLELARRFHNP----LKGKTV 120
Query: 147 FISGFGNIGVELAKRLRPFGVKII 170
I G GN G L K L +GVK +
Sbjct: 121 GIVGAGNTGTALQKCLEAYGVKTL 144
>sp|P53839|GOR1_YEAST Glyoxylate reductase 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GOR1 PE=1 SV=1
Length = 350
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 24/122 (19%)
Query: 88 GLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIV------------ 135
G + +D++ I+ A + D+ NA A+ ++L+LG LR +
Sbjct: 92 GYDQIDVEPFKKRHIQVANV-PDLVSNA--TADTHVFLLLGALRNFGIGNRRLIEGNWPE 148
Query: 136 -------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVK--IIAAKRSWASHSQVCCQS 186
P G GKTV I G G IG + +RL+PFG + I + S + C+
Sbjct: 149 AGPACGSPFGYDPEGKTVGILGLGRIGRCILERLKPFGFENFIYHNRHQLPSEEEHGCEY 208
Query: 187 SG 188
G
Sbjct: 209 VG 210
>sp|P0A544|SERA_MYCTU D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis
GN=serA PE=1 SV=1
Length = 528
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALT-------NCAIKAARILGDVSGNAASCAEL 121
D+ V+ A + ++ R VGL+ VD+DA T N + + A
Sbjct: 56 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 115
Query: 122 SIYLMLGLLRKHIVP----TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
I LR+H +G + GKTV + G G IG +A+R+ FG ++A
Sbjct: 116 QIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 169
>sp|P0A545|SERA_MYCBO D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=serA PE=3 SV=1
Length = 528
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALT-------NCAIKAARILGDVSGNAASCAEL 121
D+ V+ A + ++ R VGL+ VD+DA T N + + A
Sbjct: 56 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 115
Query: 122 SIYLMLGLLRKHIVP----TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
I LR+H +G + GKTV + G G IG +A+R+ FG ++A
Sbjct: 116 QIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 169
>sp|Q59642|LDHD_PEDAC D-lactate dehydrogenase OS=Pediococcus acidilactici GN=ldhD PE=3
SV=1
Length = 331
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Query: 87 VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGK-- 144
VGL+ V DAL IK + + + + + AELS+ +L LLRK +P E +
Sbjct: 77 VGLDNVPADALKKNDIKISNV---PAYSPRAIAELSVTQLLALLRK--IPEFEYKMAHGD 131
Query: 145 --------------TVFISGFGNIGVELAKRLRPFGVKIIA 171
TV + G G IG +PFG K+IA
Sbjct: 132 YRWEPDIGLELNQMTVGVIGTGRIGRAAIDIFKPFGAKVIA 172
>sp|P52643|LDHD_ECOLI D-lactate dehydrogenase OS=Escherichia coli (strain K12) GN=ldhA
PE=1 SV=1
Length = 329
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 88 GLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK-HIVP---------- 136
G VD+DA +K R+ + + + AE +I +M+ L R+ H
Sbjct: 78 GFNNVDLDAAKELGLKVVRV---PAYDPEAVAEHAIGMMMTLNRRIHRAYQRTRDANFSL 134
Query: 137 ---TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
TG T+ GKT + G G IGV + + L+ FG++++A
Sbjct: 135 EGLTGFTMYGKTAGVIGTGKIGVAMLRILKGFGMRLLA 172
>sp|B0TKZ7|PDXB_SHEHH Erythronate-4-phosphate dehydrogenase OS=Shewanella halifaxensis
(strain HAW-EB4) GN=pdxB PE=3 SV=1
Length = 376
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
D ++ N + + +G + +D+D L + I + G NA + E + ML
Sbjct: 50 DQALLAENNRLKFVGSATIGTDHIDLDYLASHNIPFSNAPG---CNATAVGEFAFIAMLE 106
Query: 129 LLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
L ++ P L GK V I G GN G + K L +G++++
Sbjct: 107 LAQRFNSP----LKGKVVGIVGAGNTGTAVVKCLEAYGIEVL 144
>sp|O14075|YEAA_SCHPO Putative 2-hydroxyacid dehydrogenase UNK4.10 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2E11.10 PE=2 SV=1
Length = 334
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 32 YAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITRANP-MNLIIRFRVGLE 90
Y+ G +++L+ K F ++ ++ +Y + M D +I P + I G E
Sbjct: 34 YSDGTREDFLA-KCKTEFQNVKAICRTYNSKFYMGIFDKEIIDNLPPSVKFICHLGAGYE 92
Query: 91 GVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLR---------------KHIV 135
VD+ A T I+ + + V + A++ I+LMLG LR +
Sbjct: 93 TVDVAACTARGIQVSHVPKAVDD---ATADVGIFLMLGALRGFNQGIFELHKNNWNANCK 149
Query: 136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
P+ + GKT+ I G G IG +AKR R F +KI+ R+
Sbjct: 150 PSHDPE-GKTLGILGLGGIGKTMAKRARAFDMKIVYHNRT 188
>sp|Q03134|FDH_EMENI Probable formate dehydrogenase OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aciA
PE=2 SV=3
Length = 365
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 23/115 (20%)
Query: 73 ITRANPMNLIIRFRVGLEGVDIDAL--TNCAIKAARILGDVSGNAASCAELSIYLMLGLL 130
+ +A + L + +G + VD+DA TN I A + G N S AE + +L LL
Sbjct: 80 LAKAKNLKLAVTAGIGSDHVDLDAANKTNGGITVAEVTG---SNVVSVAEHVVMTIL-LL 135
Query: 131 RKHIVPTGE-----------------TLLGKTVFISGFGNIGVELAKRLRPFGVK 168
++ VP + L K V G G IG + +RL+PF K
Sbjct: 136 VRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFDCK 190
>sp|Q9SXP2|FDH1_ORYSJ Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os06g0486800 PE=1 SV=2
Length = 376
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 73 ITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK 132
I +A + L++ +G + +D+ A + A + G N S AE + +L LLR
Sbjct: 106 IKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTG---SNTVSVAEDELMRILILLRN 162
Query: 133 HI-----VPTGE-----------TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR 174
+ V GE L GKTV G G IG L +RL+PF ++ R
Sbjct: 163 FLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDR 220
>sp|Q9ZRI8|FDH_HORVU Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1
Length = 377
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 32/145 (22%)
Query: 51 SMHSL-----YASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAA 105
MH L + +Y T+E+ I +A L++ +G + +D+ A + A
Sbjct: 88 DMHVLITTPFHPAYVTAEK--------IKKAKTPELLLTAGIGSDHIDLPAAAAAGLTVA 139
Query: 106 RILGDVSGNAASCAELSIYLMLGLLRKHI-----VPTGE-----------TLLGKTVFIS 149
R+ G N S AE + +L LLR + V GE L GKTV
Sbjct: 140 RVTG---SNTVSVAEDELMRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTV 196
Query: 150 GFGNIGVELAKRLRPFGVKIIAAKR 174
G G G L +RL+PF ++ R
Sbjct: 197 GAGRYGRLLLQRLKPFNCNLLYHDR 221
>sp|B1KKP1|PDXB_SHEWM Erythronate-4-phosphate dehydrogenase OS=Shewanella woodyi (strain
ATCC 51908 / MS32) GN=pdxB PE=3 SV=1
Length = 387
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
D++++++ + + + +G + +D + LT I + G NA + E + ML
Sbjct: 50 DASLLSKNSQLTFVGSATIGTDHIDTEYLTQRQISFSNAPG---CNATAVGEFAFIAMLE 106
Query: 129 LLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
L + G +L K V I G GN G +A+ L+ +GV+++
Sbjct: 107 LANRF----GTSLKDKVVGIVGAGNTGSAVARCLQAYGVEVL 144
>sp|Q8D2P6|PDXB_WIGBR Erythronate-4-phosphate dehydrogenase OS=Wigglesworthia glossinidia
brevipalpis GN=pdxB PE=3 SV=1
Length = 378
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 88 GLEGVDIDALTNCAIKAARILGDVSG--NAASCAELSIYLMLGLLRKHIVPTGETLLGKT 145
G + VD+D L K +I D + N+ + AE ML + +LL KT
Sbjct: 68 GKDHVDVDWL-----KKNKINFDFAPGCNSVAVAEYVFSSMLYFAYRDKF----SLLKKT 118
Query: 146 VFISGFGNIGVELAKRLRPFGVKII 170
V I GFGNIG L K+L GVK I
Sbjct: 119 VGIVGFGNIGKCLNKKLSAIGVKTI 143
>sp|P74857|SSAN_SALTY Probable secretion system apparatus ATP synthase SsaN OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=ssaN PE=3 SV=1
Length = 433
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 100 CAIKAARILGDVSGNAASCAELSIYL----------MLGLLRKHIVPTGETLLGKTVFIS 149
C IK L +V G S A LS + ++ L R+H VP GE LLG+ I
Sbjct: 46 CCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRV--ID 103
Query: 150 GFGN 153
GFG
Sbjct: 104 GFGR 107
>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana
GN=HPR3 PE=2 SV=1
Length = 323
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 80/200 (40%), Gaps = 38/200 (19%)
Query: 8 MARSSDKSITLVLFRGPHFPASHNYAKGYLQNYL--------SIKGLCFFLSMHSLYA-S 58
MA SS+ + L+ H P S + L S + L F H+ A +
Sbjct: 1 MAESSEPPVVLL-----HRPPSLTFMDEILTREFRTLITDTSSSESLPSFFPRHASSARA 55
Query: 59 YGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASC 118
+ S ++ +D +++ + +++ VG++ +D+ A I S + A C
Sbjct: 56 FVISGRLPVTD-ELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADC 114
Query: 119 AELSIYLMLGLLRKHIVPT------------------GETLLGKTVFISGFGNIGVELAK 160
A + L++ +LR+ +P G + GK V I G G+IG +AK
Sbjct: 115 A---VGLLISVLRR--IPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAK 169
Query: 161 RLRPFGVKIIAAKRSWASHS 180
RL FG I RS S
Sbjct: 170 RLESFGCVISYNSRSQKQSS 189
>sp|P0C1T0|MMEL1_RAT Membrane metallo-endopeptidase-like 1 OS=Rattus norvegicus GN=Mmel1
PE=1 SV=1
Length = 774
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 93 DIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVP 136
DI +C I AARIL ++ + C Y G LR H++P
Sbjct: 83 DICTTPSCVIAAARILQNMDQSKKPCDNFYQYACGGWLRHHVIP 126
>sp|P0C1E8|Y2355_CORGL Uncharacterized protein Cgl2355/cg2587 OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=Cgl2355 PE=3 SV=1
Length = 304
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
KTV I G G IGV L + L+PF VK IA S
Sbjct: 127 KTVAILGAGGIGVRLLEMLKPFNVKTIAVNNS 158
>sp|P0C1E9|YPRB2_CORML Uncharacterized protein in proB 3'region OS=Corynebacterium
melassecola PE=3 SV=1
Length = 304
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
KTV I G G IGV L + L+PF VK IA S
Sbjct: 127 KTVAILGAGGIGVRLLEMLKPFNVKTIAVNNS 158
>sp|P80319|DHE3_PYRFU Glutamate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=gdhA PE=1 SV=2
Length = 420
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 139 ETLLGKTVFISGFGNIGVELAKRL-RPFGVKIIAAKRS 175
+TL GKT+ I G+GN G LAK + FG+K++A S
Sbjct: 209 DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS 246
>sp|P24295|DHE2_CLOSY NAD-specific glutamate dehydrogenase OS=Clostridium symbiosum
GN=gdh PE=1 SV=4
Length = 450
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 122 SIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
S+Y + +++ +TL+GKTV ++GFGN+ AK+L G K +
Sbjct: 214 SVYYVEAVMKHE----NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAV 258
>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8)
GN=gyaR PE=3 SV=1
Length = 332
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAAS----------- 117
D+ V A + ++ ++ VG + +D+ T I G ++ A
Sbjct: 58 DAEVFEAAPKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAAR 117
Query: 118 -CAELSIYLMLGLLRKHIVPT---GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
E Y+ G + P G + G+T+ I G G IG +A+R + FG++I+
Sbjct: 118 RVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRIL 174
>sp|Q9JLI3|MMEL1_MOUSE Membrane metallo-endopeptidase-like 1 OS=Mus musculus GN=Mmel1 PE=1
SV=1
Length = 765
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 93 DIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVP 136
DI +C I AARIL ++ + C Y G LR H++P
Sbjct: 73 DICTTPSCVIAAARILENMDQSRNPCENFYQYACGGWLRHHVIP 116
>sp|A3D669|PDXB_SHEB5 Erythronate-4-phosphate dehydrogenase OS=Shewanella baltica (strain
OS155 / ATCC BAA-1091) GN=pdxB PE=3 SV=1
Length = 376
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
++ +++ N + + +G + VD+ L I + G NA + E + ML
Sbjct: 50 NAELLSGNNKLKFVGSATIGTDHVDLTYLAERNIPFSNAPG---CNATAVGEFAFIAMLE 106
Query: 129 LLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
L ++ P L GK V I G GN G AK L+ +G+K++
Sbjct: 107 LAQRFNSP----LKGKVVGIVGAGNTGTATAKCLQAYGIKVL 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,318,614
Number of Sequences: 539616
Number of extensions: 2452663
Number of successful extensions: 7499
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 7332
Number of HSP's gapped (non-prelim): 200
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)