Query 044056
Match_columns 189
No_of_seqs 202 out of 1384
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02928 oxidoreductase family 100.0 4.9E-36 1.1E-40 255.0 18.5 173 6-178 8-194 (347)
2 PRK08410 2-hydroxyacid dehydro 100.0 2.7E-35 6E-40 247.2 17.8 157 17-178 1-180 (311)
3 PRK06487 glycerate dehydrogena 100.0 7.1E-35 1.5E-39 245.3 17.0 158 17-177 1-182 (317)
4 COG1052 LdhA Lactate dehydroge 100.0 8E-35 1.7E-39 244.9 16.1 123 52-177 38-180 (324)
5 COG0111 SerA Phosphoglycerate 100.0 9.7E-35 2.1E-39 244.5 15.6 158 15-179 2-178 (324)
6 PRK15409 bifunctional glyoxyla 100.0 1.3E-34 2.8E-39 244.1 16.0 156 16-178 2-181 (323)
7 PRK06932 glycerate dehydrogena 100.0 4.3E-34 9.4E-39 240.2 15.5 123 51-176 37-180 (314)
8 PRK11790 D-3-phosphoglycerate 100.0 8.7E-34 1.9E-38 245.8 16.0 159 12-177 6-185 (409)
9 PRK13243 glyoxylate reductase; 100.0 4.6E-33 9.9E-38 235.8 16.4 155 17-178 3-185 (333)
10 PRK12480 D-lactate dehydrogena 100.0 1.2E-32 2.7E-37 232.7 15.4 158 16-178 1-181 (330)
11 PRK13581 D-3-phosphoglycerate 100.0 9E-32 2E-36 239.9 16.5 154 17-177 1-174 (526)
12 PRK15438 erythronate-4-phospha 100.0 1.4E-31 3.1E-36 229.0 16.9 148 17-177 1-150 (378)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 2E-31 4.4E-36 237.6 15.6 153 18-177 1-172 (525)
14 PLN03139 formate dehydrogenase 100.0 2.6E-31 5.6E-36 228.0 15.6 124 51-177 90-233 (386)
15 PRK00257 erythronate-4-phospha 100.0 8.1E-31 1.8E-35 224.8 17.2 148 17-177 1-150 (381)
16 PRK07574 formate dehydrogenase 100.0 4.8E-31 1E-35 226.4 15.1 124 51-177 83-226 (385)
17 KOG0068 D-3-phosphoglycerate d 100.0 5.1E-31 1.1E-35 217.8 14.1 156 17-179 7-182 (406)
18 PLN02306 hydroxypyruvate reduc 100.0 1.1E-30 2.4E-35 224.5 16.7 159 14-178 13-201 (386)
19 PRK08605 D-lactate dehydrogena 100.0 1.9E-30 4.2E-35 219.7 15.8 155 17-178 4-182 (332)
20 PRK15469 ghrA bifunctional gly 100.0 1.3E-27 2.9E-32 200.6 16.7 155 17-180 1-173 (312)
21 PRK06436 glycerate dehydrogena 100.0 1.3E-27 2.9E-32 199.8 15.6 113 56-178 32-157 (303)
22 KOG0069 Glyoxylate/hydroxypyru 99.9 1.5E-26 3.2E-31 193.8 11.3 123 53-178 55-197 (336)
23 PF00389 2-Hacid_dh: D-isomer 99.8 5.6E-19 1.2E-23 131.0 8.0 96 19-122 1-101 (133)
24 TIGR02853 spore_dpaA dipicolin 99.6 2.2E-15 4.7E-20 125.5 11.1 98 68-178 82-186 (287)
25 PF02826 2-Hacid_dh_C: D-isome 99.6 2.5E-15 5.4E-20 116.9 4.0 58 123-180 1-73 (178)
26 KOG0067 Transcription factor C 99.5 5.5E-15 1.2E-19 124.2 5.8 125 51-178 65-213 (435)
27 PTZ00075 Adenosylhomocysteinas 99.3 2.4E-12 5.1E-17 113.0 7.4 91 84-177 197-288 (476)
28 PRK08306 dipicolinate synthase 99.3 2.7E-11 5.9E-16 101.4 13.2 100 69-178 84-187 (296)
29 PRK13403 ketol-acid reductoiso 98.6 3.8E-08 8.3E-13 82.9 3.9 40 138-177 11-50 (335)
30 PRK05476 S-adenosyl-L-homocyst 98.4 3.2E-07 6.8E-12 80.3 5.3 89 83-178 154-247 (425)
31 PLN02494 adenosylhomocysteinas 98.3 1.1E-06 2.3E-11 77.5 5.2 41 137-177 248-288 (477)
32 cd01075 NAD_bind_Leu_Phe_Val_D 98.2 4.2E-06 9E-11 66.3 7.4 59 117-177 4-62 (200)
33 TIGR00936 ahcY adenosylhomocys 98.1 6.7E-06 1.4E-10 71.7 6.6 90 81-177 135-229 (406)
34 PF00670 AdoHcyase_NAD: S-aden 97.9 9.4E-06 2E-10 62.1 3.8 40 137-176 17-56 (162)
35 PRK05479 ketol-acid reductoiso 97.9 1.3E-05 2.7E-10 68.1 4.2 39 138-176 12-50 (330)
36 cd00401 AdoHcyase S-adenosyl-L 97.9 2.7E-05 5.9E-10 68.1 6.4 90 82-178 143-237 (413)
37 PLN02712 arogenate dehydrogena 97.6 6.4E-05 1.4E-09 69.5 5.0 41 136-176 362-402 (667)
38 cd01076 NAD_bind_1_Glu_DH NAD( 97.5 0.00047 1E-08 55.7 7.1 56 116-175 8-63 (227)
39 PLN02256 arogenate dehydrogena 97.4 0.00024 5.3E-09 59.8 4.8 37 140-176 33-69 (304)
40 TIGR00518 alaDH alanine dehydr 97.4 0.0034 7.3E-08 54.3 11.8 119 58-177 66-201 (370)
41 cd05313 NAD_bind_2_Glu_DH NAD( 97.3 0.00094 2E-08 54.8 7.2 55 115-173 14-68 (254)
42 cd05211 NAD_bind_Glu_Leu_Phe_V 97.2 0.0011 2.4E-08 53.2 6.4 36 138-173 18-53 (217)
43 cd05191 NAD_bind_amino_acid_DH 97.2 0.00087 1.9E-08 45.7 5.1 38 137-174 17-55 (86)
44 KOG0023 Alcohol dehydrogenase, 97.1 0.00036 7.8E-09 58.7 3.2 37 142-178 181-217 (360)
45 PRK09414 glutamate dehydrogena 97.1 0.0015 3.2E-08 57.7 7.1 56 114-173 207-263 (445)
46 PF01488 Shikimate_DH: Shikima 97.1 0.00087 1.9E-08 49.6 4.3 40 139-178 8-48 (135)
47 PF03807 F420_oxidored: NADP o 97.0 0.00069 1.5E-08 46.7 3.5 34 145-178 1-38 (96)
48 PLN02712 arogenate dehydrogena 97.0 0.0011 2.5E-08 61.4 5.4 38 139-176 48-85 (667)
49 PRK14031 glutamate dehydrogena 96.9 0.0033 7.1E-08 55.5 7.4 56 115-174 204-259 (444)
50 PRK11199 tyrA bifunctional cho 96.9 0.0032 6.9E-08 54.5 6.9 61 116-176 68-132 (374)
51 PRK05225 ketol-acid reductoiso 96.8 0.00065 1.4E-08 59.9 2.4 34 137-175 30-63 (487)
52 cd01065 NAD_bind_Shikimate_DH 96.8 0.0021 4.6E-08 47.9 4.9 40 139-178 15-55 (155)
53 PLN02477 glutamate dehydrogena 96.8 0.0037 7.9E-08 54.8 6.8 55 115-173 182-236 (410)
54 PRK01710 murD UDP-N-acetylmura 96.8 0.0019 4E-08 57.2 5.0 38 140-177 11-48 (458)
55 PRK09424 pntA NAD(P) transhydr 96.8 0.017 3.8E-07 51.9 11.1 121 58-178 65-200 (509)
56 PRK14030 glutamate dehydrogena 96.8 0.0047 1E-07 54.5 7.3 54 114-171 203-256 (445)
57 TIGR00561 pntA NAD(P) transhyd 96.7 0.03 6.4E-07 50.4 12.0 121 58-178 64-199 (511)
58 TIGR01035 hemA glutamyl-tRNA r 96.7 0.0023 5.1E-08 56.1 4.8 56 115-178 160-216 (417)
59 PLN02272 glyceraldehyde-3-phos 96.6 0.0022 4.7E-08 56.2 4.1 32 144-175 86-119 (421)
60 PRK05472 redox-sensing transcr 96.5 0.0036 7.7E-08 49.9 4.3 58 115-176 60-120 (213)
61 cd01078 NAD_bind_H4MPT_DH NADP 96.4 0.006 1.3E-07 47.6 5.2 40 138-177 23-63 (194)
62 KOG0409 Predicted dehydrogenas 96.4 0.0036 7.7E-08 52.4 4.0 54 126-179 12-71 (327)
63 PF13241 NAD_binding_7: Putati 96.4 0.0066 1.4E-07 42.8 4.7 37 140-176 4-40 (103)
64 cd01080 NAD_bind_m-THF_DH_Cycl 96.4 0.0076 1.7E-07 46.5 5.1 54 116-177 25-79 (168)
65 PRK00045 hemA glutamyl-tRNA re 96.3 0.0053 1.1E-07 54.0 4.7 39 140-178 179-218 (423)
66 COG1064 AdhP Zn-dependent alco 96.3 0.0035 7.6E-08 53.4 3.3 38 142-179 166-203 (339)
67 PRK00258 aroE shikimate 5-dehy 96.3 0.0069 1.5E-07 50.2 5.0 41 138-178 118-159 (278)
68 COG0499 SAM1 S-adenosylhomocys 96.3 0.0048 1E-07 52.8 4.0 40 137-176 203-242 (420)
69 PRK06719 precorrin-2 dehydroge 96.2 0.0069 1.5E-07 46.1 4.2 40 137-176 7-46 (157)
70 PRK14194 bifunctional 5,10-met 96.2 0.007 1.5E-07 50.9 4.5 54 116-177 140-194 (301)
71 PTZ00079 NADP-specific glutama 96.2 0.016 3.4E-07 51.3 6.7 54 116-173 214-267 (454)
72 PLN02858 fructose-bisphosphate 96.2 0.005 1.1E-07 61.4 4.0 37 142-178 323-359 (1378)
73 cd05213 NAD_bind_Glutamyl_tRNA 96.1 0.0073 1.6E-07 50.9 4.2 38 141-178 176-214 (311)
74 PF00208 ELFV_dehydrog: Glutam 96.0 0.024 5.1E-07 46.3 6.7 54 116-172 8-61 (244)
75 PRK00141 murD UDP-N-acetylmura 96.0 0.0088 1.9E-07 53.2 4.4 39 138-176 10-48 (473)
76 PRK09310 aroDE bifunctional 3- 96.0 0.011 2.5E-07 52.7 5.1 40 138-177 327-366 (477)
77 TIGR02354 thiF_fam2 thiamine b 95.7 0.014 3E-07 46.2 4.0 39 137-175 15-54 (200)
78 TIGR02356 adenyl_thiF thiazole 95.7 0.014 3E-07 46.2 4.0 39 138-176 16-55 (202)
79 PLN00203 glutamyl-tRNA reducta 95.7 0.014 3.1E-07 52.6 4.5 39 140-178 263-302 (519)
80 PF00899 ThiF: ThiF family; I 95.6 0.012 2.5E-07 43.3 3.0 36 143-178 2-38 (135)
81 COG0334 GdhA Glutamate dehydro 95.6 0.022 4.8E-07 49.6 5.0 41 137-177 201-241 (411)
82 cd05311 NAD_bind_2_malic_enz N 95.5 0.043 9.3E-07 44.2 6.3 54 119-176 5-61 (226)
83 PRK14189 bifunctional 5,10-met 95.4 0.019 4.1E-07 47.9 4.0 40 137-176 152-192 (285)
84 cd00757 ThiF_MoeB_HesA_family 95.4 0.022 4.8E-07 45.8 4.2 40 138-177 16-56 (228)
85 TIGR00507 aroE shikimate 5-deh 95.4 0.03 6.4E-07 46.2 5.0 38 140-177 114-151 (270)
86 KOG0022 Alcohol dehydrogenase, 95.4 0.016 3.4E-07 49.0 3.3 39 141-179 191-230 (375)
87 PRK14188 bifunctional 5,10-met 95.4 0.024 5.2E-07 47.6 4.4 53 116-176 139-193 (296)
88 PF00070 Pyr_redox: Pyridine n 95.4 0.036 7.7E-07 36.9 4.5 35 145-179 1-35 (80)
89 PRK12549 shikimate 5-dehydroge 95.3 0.029 6.4E-07 46.7 4.9 40 139-178 123-163 (284)
90 PRK01438 murD UDP-N-acetylmura 95.3 0.031 6.7E-07 49.7 5.2 39 138-176 11-49 (480)
91 PRK12475 thiamine/molybdopteri 95.1 0.037 8E-07 47.3 4.9 39 138-176 19-58 (338)
92 PRK12548 shikimate 5-dehydroge 95.1 0.037 8.1E-07 46.2 4.7 38 139-176 122-160 (289)
93 PF10727 Rossmann-like: Rossma 95.0 0.013 2.9E-07 43.1 1.7 36 141-176 8-44 (127)
94 PRK14982 acyl-ACP reductase; P 95.0 0.054 1.2E-06 46.4 5.6 42 136-177 148-192 (340)
95 PRK14175 bifunctional 5,10-met 94.9 0.047 1E-06 45.7 4.9 54 116-177 139-193 (286)
96 PRK00676 hemA glutamyl-tRNA re 94.9 0.044 9.6E-07 46.8 4.8 39 139-177 170-209 (338)
97 PRK05690 molybdopterin biosynt 94.8 0.042 9E-07 44.8 4.4 39 138-176 27-66 (245)
98 PF01262 AlaDh_PNT_C: Alanine 94.8 0.041 8.9E-07 42.1 4.1 39 139-177 16-54 (168)
99 TIGR02964 xanthine_xdhC xanthi 94.7 0.053 1.1E-06 44.3 4.7 34 144-177 101-134 (246)
100 KOG1370 S-adenosylhomocysteine 94.7 0.035 7.7E-07 46.8 3.6 35 140-174 211-245 (434)
101 PRK08328 hypothetical protein; 94.7 0.047 1E-06 44.1 4.2 40 137-176 21-61 (231)
102 PRK07688 thiamine/molybdopteri 94.6 0.05 1.1E-06 46.5 4.4 39 138-176 19-58 (339)
103 cd01492 Aos1_SUMO Ubiquitin ac 94.6 0.046 9.9E-07 43.1 3.8 42 137-178 15-57 (197)
104 PRK04148 hypothetical protein; 94.5 0.039 8.4E-07 41.0 3.2 36 142-178 16-51 (134)
105 PRK13940 glutamyl-tRNA reducta 94.5 0.094 2E-06 46.1 6.0 95 79-177 96-216 (414)
106 TIGR02355 moeB molybdopterin s 94.5 0.063 1.4E-06 43.7 4.6 42 138-179 19-61 (240)
107 PLN02948 phosphoribosylaminoim 94.4 0.075 1.6E-06 48.7 5.3 39 139-177 18-56 (577)
108 PF02254 TrkA_N: TrkA-N domain 94.3 0.053 1.2E-06 38.3 3.3 33 146-178 1-33 (116)
109 PRK06841 short chain dehydroge 94.3 0.071 1.5E-06 42.6 4.5 38 140-177 12-50 (255)
110 PRK09496 trkA potassium transp 94.3 0.06 1.3E-06 47.2 4.3 40 139-178 227-266 (453)
111 PRK14192 bifunctional 5,10-met 94.3 0.092 2E-06 43.8 5.2 40 137-176 153-193 (283)
112 KOG2380 Prephenate dehydrogena 94.3 0.05 1.1E-06 46.5 3.6 34 143-176 52-85 (480)
113 PRK14179 bifunctional 5,10-met 94.2 0.054 1.2E-06 45.2 3.6 52 115-174 138-190 (284)
114 PRK08762 molybdopterin biosynt 94.1 0.055 1.2E-06 46.8 3.7 70 95-175 93-168 (376)
115 PF01113 DapB_N: Dihydrodipico 94.1 0.1 2.2E-06 38.0 4.5 32 145-176 2-36 (124)
116 cd01485 E1-1_like Ubiquitin ac 94.1 0.08 1.7E-06 41.7 4.2 40 138-177 14-54 (198)
117 TIGR01809 Shik-DH-AROM shikima 94.0 0.087 1.9E-06 43.8 4.6 38 140-177 122-160 (282)
118 PF13380 CoA_binding_2: CoA bi 94.0 0.1 2.2E-06 37.6 4.3 44 144-187 1-48 (116)
119 PLN02520 bifunctional 3-dehydr 93.9 0.099 2.1E-06 47.4 5.1 40 138-177 374-413 (529)
120 PRK08644 thiamine biosynthesis 93.8 0.079 1.7E-06 42.3 3.8 40 137-176 22-62 (212)
121 PRK06153 hypothetical protein; 93.7 0.065 1.4E-06 46.6 3.4 37 139-175 172-209 (393)
122 TIGR03366 HpnZ_proposed putati 93.7 0.099 2.2E-06 42.9 4.3 35 142-176 120-155 (280)
123 KOG1201 Hydroxysteroid 17-beta 93.7 0.14 3E-06 43.0 5.0 60 122-181 17-77 (300)
124 COG0059 IlvC Ketol-acid reduct 93.6 0.078 1.7E-06 44.6 3.5 37 140-176 15-51 (338)
125 cd08230 glucose_DH Glucose deh 93.6 0.11 2.4E-06 44.0 4.5 35 141-175 171-205 (355)
126 PRK09880 L-idonate 5-dehydroge 93.5 0.092 2E-06 44.3 4.0 36 142-177 169-205 (343)
127 PLN02740 Alcohol dehydrogenase 93.3 0.11 2.3E-06 44.7 4.1 37 141-177 197-234 (381)
128 PRK07831 short chain dehydroge 93.3 0.11 2.3E-06 41.9 3.9 39 139-177 13-53 (262)
129 TIGR01381 E1_like_apg7 E1-like 93.3 0.12 2.5E-06 47.8 4.4 61 116-176 309-372 (664)
130 TIGR01202 bchC 2-desacetyl-2-h 93.3 0.13 2.9E-06 42.8 4.5 34 142-175 144-178 (308)
131 TIGR02822 adh_fam_2 zinc-bindi 93.2 0.11 2.5E-06 43.7 4.0 36 142-177 165-200 (329)
132 PRK12771 putative glutamate sy 93.2 0.14 3.1E-06 46.5 4.9 37 140-176 134-170 (564)
133 PLN02586 probable cinnamyl alc 93.2 0.15 3.3E-06 43.5 4.8 35 142-176 183-217 (360)
134 COG0373 HemA Glutamyl-tRNA red 93.1 0.16 3.4E-06 44.6 4.8 42 139-180 174-216 (414)
135 PRK05597 molybdopterin biosynt 93.1 0.14 2.9E-06 44.1 4.4 39 138-176 23-62 (355)
136 TIGR03201 dearomat_had 6-hydro 93.1 0.14 3.1E-06 43.3 4.4 35 142-176 166-200 (349)
137 COG0281 SfcA Malic enzyme [Ene 93.0 0.33 7.2E-06 42.5 6.6 70 99-178 165-237 (432)
138 PRK08223 hypothetical protein; 92.9 0.15 3.3E-06 42.6 4.3 40 137-176 21-61 (287)
139 TIGR02818 adh_III_F_hyde S-(hy 92.9 0.17 3.7E-06 43.3 4.7 36 141-176 184-220 (368)
140 cd05312 NAD_bind_1_malic_enz N 92.9 0.32 7E-06 40.5 6.1 55 118-176 4-69 (279)
141 PLN00141 Tic62-NAD(P)-related 92.9 0.15 3.2E-06 41.1 4.1 39 139-177 13-52 (251)
142 cd08301 alcohol_DH_plants Plan 92.8 0.16 3.4E-06 43.3 4.3 37 141-177 186-223 (369)
143 cd08239 THR_DH_like L-threonin 92.8 0.16 3.5E-06 42.5 4.3 35 142-176 163-198 (339)
144 PRK06141 ornithine cyclodeamin 92.7 0.15 3.2E-06 43.1 4.0 37 142-178 124-162 (314)
145 PRK05866 short chain dehydroge 92.7 0.26 5.6E-06 40.8 5.4 42 136-177 33-75 (293)
146 PLN02178 cinnamyl-alcohol dehy 92.7 0.16 3.5E-06 43.7 4.3 35 142-176 178-212 (375)
147 PRK10792 bifunctional 5,10-met 92.6 0.16 3.6E-06 42.4 4.0 42 137-178 153-195 (285)
148 PRK05600 thiamine biosynthesis 92.6 0.16 3.4E-06 44.0 4.0 40 137-176 35-75 (370)
149 cd05188 MDR Medium chain reduc 92.5 0.23 5E-06 39.4 4.7 36 141-176 133-168 (271)
150 cd08300 alcohol_DH_class_III c 92.4 0.15 3.3E-06 43.5 3.8 36 141-176 185-221 (368)
151 TIGR03451 mycoS_dep_FDH mycoth 92.4 0.15 3.3E-06 43.3 3.7 35 142-176 176-211 (358)
152 PRK07411 hypothetical protein; 92.4 0.18 3.9E-06 44.0 4.2 39 138-176 33-72 (390)
153 PRK12862 malic enzyme; Reviewe 92.3 0.55 1.2E-05 44.5 7.6 66 101-176 161-229 (763)
154 PRK12367 short chain dehydroge 92.3 0.21 4.5E-06 40.5 4.3 39 138-176 9-48 (245)
155 PF13738 Pyr_redox_3: Pyridine 92.3 0.33 7.2E-06 37.4 5.3 41 137-177 161-201 (203)
156 COG1249 Lpd Pyruvate/2-oxoglut 92.3 0.23 4.9E-06 44.3 4.7 37 144-180 174-210 (454)
157 cd01491 Ube1_repeat1 Ubiquitin 92.1 0.2 4.4E-06 41.9 4.1 43 138-180 14-57 (286)
158 PRK14176 bifunctional 5,10-met 92.1 0.2 4.4E-06 41.9 4.0 54 116-177 145-199 (287)
159 PRK12861 malic enzyme; Reviewe 92.1 0.47 1E-05 44.8 6.8 66 101-176 157-225 (764)
160 PRK07232 bifunctional malic en 92.1 0.6 1.3E-05 44.1 7.4 67 100-176 152-221 (752)
161 PRK03562 glutathione-regulated 92.0 0.086 1.9E-06 48.7 1.9 38 143-180 400-437 (621)
162 PLN03096 glyceraldehyde-3-phos 92.0 0.23 4.9E-06 43.4 4.3 30 144-173 61-93 (395)
163 PRK10669 putative cation:proto 92.0 0.079 1.7E-06 48.1 1.6 37 144-180 418-454 (558)
164 cd08281 liver_ADH_like1 Zinc-d 92.0 0.17 3.7E-06 43.2 3.6 36 142-177 191-227 (371)
165 PRK06935 2-deoxy-D-gluconate 3 91.9 0.3 6.5E-06 39.2 4.8 37 139-175 11-48 (258)
166 PRK06196 oxidoreductase; Provi 91.9 0.31 6.7E-06 40.7 5.0 39 139-177 22-61 (315)
167 PRK15116 sulfur acceptor prote 91.9 0.25 5.4E-06 40.9 4.3 40 137-176 24-64 (268)
168 cd08245 CAD Cinnamyl alcohol d 91.9 0.29 6.3E-06 40.7 4.8 37 141-177 161-197 (330)
169 PRK07878 molybdopterin biosynt 91.9 0.22 4.7E-06 43.4 4.1 39 138-176 37-76 (392)
170 PF01118 Semialdhyde_dh: Semia 91.8 0.27 5.9E-06 35.3 4.0 32 145-176 1-35 (121)
171 PLN03154 putative allyl alcoho 91.8 0.29 6.2E-06 41.6 4.7 36 141-176 157-193 (348)
172 cd05283 CAD1 Cinnamyl alcohol 91.7 0.24 5.1E-06 41.6 4.1 36 141-176 168-203 (337)
173 PRK08289 glyceraldehyde-3-phos 91.7 0.23 4.9E-06 44.2 4.0 85 76-173 73-162 (477)
174 PRK12749 quinate/shikimate deh 91.7 0.36 7.9E-06 40.3 5.1 39 138-176 119-158 (288)
175 cd08277 liver_alcohol_DH_like 91.6 0.3 6.6E-06 41.6 4.7 36 141-176 183-219 (365)
176 cd08242 MDR_like Medium chain 91.6 0.33 7.1E-06 40.2 4.7 36 141-176 154-189 (319)
177 PRK06197 short chain dehydroge 91.5 0.3 6.5E-06 40.5 4.5 40 138-177 11-51 (306)
178 cd08296 CAD_like Cinnamyl alco 91.5 0.32 7E-06 40.7 4.7 36 141-176 162-197 (333)
179 cd08295 double_bond_reductase_ 91.5 0.32 7E-06 40.8 4.7 36 141-176 150-186 (338)
180 cd00762 NAD_bind_malic_enz NAD 91.5 0.44 9.5E-06 39.2 5.2 55 118-176 4-69 (254)
181 PRK05562 precorrin-2 dehydroge 91.5 0.36 7.9E-06 38.9 4.7 43 136-178 18-60 (223)
182 PRK14027 quinate/shikimate deh 91.4 0.37 8E-06 40.2 4.8 39 140-178 124-163 (283)
183 TIGR02441 fa_ox_alpha_mit fatt 91.3 0.26 5.7E-06 46.4 4.3 35 144-178 336-370 (737)
184 PLN02780 ketoreductase/ oxidor 91.2 0.48 1E-05 39.9 5.4 38 141-178 51-89 (320)
185 PRK08324 short chain dehydroge 91.1 0.37 8E-06 44.9 5.1 42 137-178 416-458 (681)
186 PLN02253 xanthoxin dehydrogena 91.1 0.44 9.5E-06 38.8 5.0 40 138-177 13-53 (280)
187 PRK03659 glutathione-regulated 91.1 0.12 2.7E-06 47.5 1.8 38 143-180 400-437 (601)
188 KOG0024 Sorbitol dehydrogenase 91.1 0.3 6.5E-06 41.5 4.0 36 142-177 169-205 (354)
189 PRK13529 malate dehydrogenase; 91.1 1.5 3.3E-05 39.9 8.7 91 75-176 237-339 (563)
190 PF01408 GFO_IDH_MocA: Oxidore 91.0 0.33 7.2E-06 34.3 3.7 33 145-177 2-37 (120)
191 cd08255 2-desacetyl-2-hydroxye 91.0 0.37 8.1E-06 38.9 4.4 36 141-176 96-132 (277)
192 PRK11730 fadB multifunctional 91.0 0.3 6.4E-06 45.9 4.3 35 144-178 314-348 (715)
193 PRK15181 Vi polysaccharide bio 90.9 0.41 9E-06 40.6 4.8 38 139-176 11-49 (348)
194 PLN02514 cinnamyl-alcohol dehy 90.9 0.27 5.9E-06 41.8 3.7 36 141-176 179-214 (357)
195 TIGR02437 FadB fatty oxidation 90.9 0.31 6.7E-06 45.8 4.3 35 144-178 314-348 (714)
196 cd08237 ribitol-5-phosphate_DH 90.8 0.3 6.5E-06 41.3 3.9 37 142-178 163-201 (341)
197 PRK06701 short chain dehydroge 90.8 0.45 9.8E-06 39.3 4.8 39 138-176 41-80 (290)
198 PRK07424 bifunctional sterol d 90.8 0.33 7.2E-06 42.6 4.2 39 139-177 174-213 (406)
199 PRK10309 galactitol-1-phosphat 90.8 0.35 7.5E-06 40.7 4.2 36 141-176 159-195 (347)
200 cd08231 MDR_TM0436_like Hypoth 90.8 0.42 9.1E-06 40.4 4.7 35 142-176 177-212 (361)
201 COG1063 Tdh Threonine dehydrog 90.8 0.41 8.9E-06 41.0 4.6 35 144-178 170-205 (350)
202 PLN03209 translocon at the inn 90.5 0.43 9.2E-06 43.7 4.7 39 140-178 77-116 (576)
203 PLN02695 GDP-D-mannose-3',5'-e 90.5 0.44 9.5E-06 40.9 4.6 35 142-176 20-55 (370)
204 TIGR02440 FadJ fatty oxidation 90.5 0.35 7.7E-06 45.3 4.3 34 144-177 305-339 (699)
205 PLN02237 glyceraldehyde-3-phos 90.5 0.35 7.6E-06 42.8 4.0 32 143-174 75-109 (442)
206 PRK06720 hypothetical protein; 90.5 0.5 1.1E-05 36.2 4.5 38 140-177 13-51 (169)
207 cd08234 threonine_DH_like L-th 90.4 0.45 9.7E-06 39.5 4.5 36 141-176 158-194 (334)
208 PRK12769 putative oxidoreducta 90.3 0.45 9.8E-06 44.1 4.9 37 141-177 325-361 (654)
209 TIGR02825 B4_12hDH leukotriene 90.3 0.47 1E-05 39.5 4.6 35 142-176 138-173 (325)
210 PRK11064 wecC UDP-N-acetyl-D-m 90.3 0.88 1.9E-05 39.9 6.4 41 138-178 315-366 (415)
211 PRK07985 oxidoreductase; Provi 90.3 0.52 1.1E-05 39.0 4.8 37 140-176 46-83 (294)
212 cd08288 MDR_yhdh Yhdh putative 90.3 0.4 8.7E-06 39.6 4.1 35 142-176 146-181 (324)
213 cd08260 Zn_ADH6 Alcohol dehydr 90.2 0.36 7.8E-06 40.5 3.8 37 141-177 164-200 (345)
214 PRK05854 short chain dehydroge 90.2 0.62 1.3E-05 38.9 5.2 40 138-177 9-49 (313)
215 cd08289 MDR_yhfp_like Yhfp put 90.1 0.39 8.5E-06 39.7 3.9 35 142-176 146-181 (326)
216 PRK11154 fadJ multifunctional 90.1 0.38 8.2E-06 45.2 4.2 34 144-177 310-344 (708)
217 PLN02827 Alcohol dehydrogenase 90.1 0.52 1.1E-05 40.6 4.7 36 141-176 192-228 (378)
218 cd08269 Zn_ADH9 Alcohol dehydr 90.0 0.52 1.1E-05 38.6 4.6 36 141-176 128-164 (312)
219 PRK14851 hypothetical protein; 90.0 0.37 8E-06 45.0 3.9 39 137-175 37-76 (679)
220 PLN02657 3,8-divinyl protochlo 89.8 0.58 1.3E-05 40.6 4.9 42 136-177 53-95 (390)
221 PRK08261 fabG 3-ketoacyl-(acyl 89.7 0.54 1.2E-05 41.3 4.7 38 139-176 206-244 (450)
222 TIGR01318 gltD_gamma_fam gluta 89.6 0.62 1.3E-05 41.5 4.9 37 141-177 139-175 (467)
223 PLN02602 lactate dehydrogenase 89.5 0.52 1.1E-05 40.6 4.2 38 144-181 38-77 (350)
224 PF03949 Malic_M: Malic enzyme 89.4 0.54 1.2E-05 38.7 4.0 56 117-176 3-69 (255)
225 cd08293 PTGR2 Prostaglandin re 89.3 0.61 1.3E-05 39.0 4.5 35 143-177 155-191 (345)
226 PRK07340 ornithine cyclodeamin 89.3 0.71 1.5E-05 38.8 4.9 38 141-178 123-162 (304)
227 PRK07251 pyridine nucleotide-d 89.3 0.68 1.5E-05 40.6 5.0 35 143-177 157-191 (438)
228 cd08294 leukotriene_B4_DH_like 89.2 0.65 1.4E-05 38.4 4.6 35 142-176 143-178 (329)
229 PRK12809 putative oxidoreducta 89.2 0.61 1.3E-05 43.2 4.8 37 141-177 308-344 (639)
230 cd08282 PFDH_like Pseudomonas 89.2 0.68 1.5E-05 39.6 4.8 36 141-176 175-211 (375)
231 KOG0029 Amine oxidase [Seconda 89.1 0.66 1.4E-05 41.9 4.8 38 140-177 12-49 (501)
232 cd08233 butanediol_DH_like (2R 89.0 0.72 1.6E-05 38.8 4.8 36 141-176 171-207 (351)
233 COG0169 AroE Shikimate 5-dehyd 89.0 0.83 1.8E-05 38.2 5.0 41 138-178 121-162 (283)
234 COG1004 Ugd Predicted UDP-gluc 88.9 0.55 1.2E-05 41.0 3.9 39 141-179 308-356 (414)
235 cd08299 alcohol_DH_class_I_II_ 88.8 0.73 1.6E-05 39.5 4.7 37 140-176 188-225 (373)
236 PF02882 THF_DHG_CYH_C: Tetrah 88.7 0.94 2E-05 34.6 4.7 40 137-176 30-70 (160)
237 TIGR02632 RhaD_aldol-ADH rhamn 88.7 0.83 1.8E-05 42.7 5.3 40 138-177 409-449 (676)
238 PRK12814 putative NADPH-depend 88.7 0.68 1.5E-05 43.0 4.7 37 141-177 191-227 (652)
239 PRK06128 oxidoreductase; Provi 88.6 0.7 1.5E-05 38.2 4.4 36 140-175 52-88 (300)
240 PRK14178 bifunctional 5,10-met 88.6 0.71 1.5E-05 38.5 4.3 54 116-177 133-187 (279)
241 PLN02427 UDP-apiose/xylose syn 88.5 0.84 1.8E-05 39.2 4.9 40 137-176 8-49 (386)
242 PRK05579 bifunctional phosphop 88.5 0.85 1.8E-05 40.0 4.9 38 139-176 184-238 (399)
243 PRK15182 Vi polysaccharide bio 88.4 1.6 3.5E-05 38.5 6.7 40 138-177 309-358 (425)
244 COG2072 TrkA Predicted flavopr 88.2 0.89 1.9E-05 40.3 5.0 42 136-177 168-209 (443)
245 PRK08618 ornithine cyclodeamin 88.2 0.6 1.3E-05 39.6 3.7 37 142-178 126-164 (325)
246 cd08274 MDR9 Medium chain dehy 88.1 0.89 1.9E-05 38.0 4.7 34 142-175 177-211 (350)
247 PRK06327 dihydrolipoamide dehy 88.1 0.83 1.8E-05 40.6 4.7 35 143-177 183-217 (475)
248 TIGR03026 NDP-sugDHase nucleot 87.9 1.6 3.5E-05 38.1 6.3 39 140-178 310-358 (411)
249 PLN02572 UDP-sulfoquinovose sy 87.9 0.99 2.1E-05 39.9 5.1 40 136-175 40-80 (442)
250 cd08285 NADP_ADH NADP(H)-depen 87.9 0.92 2E-05 38.2 4.7 36 141-176 165-201 (351)
251 PRK14804 ornithine carbamoyltr 87.8 3.4 7.3E-05 35.0 8.0 72 96-176 114-187 (311)
252 cd08264 Zn_ADH_like2 Alcohol d 87.8 0.8 1.7E-05 37.9 4.2 34 141-174 161-195 (325)
253 cd05284 arabinose_DH_like D-ar 87.6 0.63 1.4E-05 38.8 3.5 36 141-176 166-202 (340)
254 PRK12810 gltD glutamate syntha 87.5 0.95 2.1E-05 40.2 4.8 38 140-177 140-177 (471)
255 PRK12550 shikimate 5-dehydroge 87.5 0.57 1.2E-05 38.8 3.1 36 143-178 122-158 (272)
256 TIGR02823 oxido_YhdH putative 87.4 0.76 1.6E-05 38.0 3.8 36 141-176 143-180 (323)
257 TIGR01316 gltA glutamate synth 87.4 1 2.2E-05 39.9 4.8 38 140-177 130-167 (449)
258 cd05280 MDR_yhdh_yhfp Yhdh and 87.4 0.8 1.7E-05 37.7 4.0 35 142-176 146-181 (325)
259 COG1062 AdhC Zn-dependent alco 87.3 0.57 1.2E-05 40.2 3.0 44 137-180 180-224 (366)
260 PRK05249 soluble pyridine nucl 87.3 0.96 2.1E-05 39.8 4.6 35 143-177 175-209 (461)
261 cd08270 MDR4 Medium chain dehy 87.3 0.73 1.6E-05 37.6 3.7 35 142-176 132-167 (305)
262 PRK09754 phenylpropionate diox 87.3 1 2.2E-05 39.0 4.7 36 142-177 143-178 (396)
263 TIGR02992 ectoine_eutC ectoine 87.2 0.77 1.7E-05 38.9 3.8 37 142-178 128-166 (326)
264 cd08298 CAD2 Cinnamyl alcohol 87.2 1.1 2.3E-05 37.2 4.7 37 140-176 165-201 (329)
265 PRK13512 coenzyme A disulfide 87.1 0.99 2.2E-05 39.7 4.6 35 143-177 148-182 (438)
266 cd08292 ETR_like_2 2-enoyl thi 87.1 0.76 1.6E-05 37.8 3.7 35 142-176 139-174 (324)
267 TIGR01316 gltA glutamate synth 87.1 1.1 2.3E-05 39.7 4.8 37 140-176 269-305 (449)
268 PRK01713 ornithine carbamoyltr 87.1 3.5 7.6E-05 35.3 7.8 73 95-176 117-191 (334)
269 PRK14852 hypothetical protein; 87.1 0.67 1.4E-05 44.9 3.7 38 138-175 327-365 (989)
270 PRK06116 glutathione reductase 87.0 1 2.2E-05 39.6 4.7 35 143-177 167-201 (450)
271 PRK06484 short chain dehydroge 87.0 1.7 3.6E-05 38.8 6.1 38 140-177 266-304 (520)
272 cd08284 FDH_like_2 Glutathione 86.9 1.1 2.5E-05 37.3 4.7 36 140-175 165-201 (344)
273 cd08278 benzyl_alcohol_DH Benz 86.9 1.1 2.5E-05 38.0 4.8 36 141-176 185-221 (365)
274 cd05288 PGDH Prostaglandin deh 86.9 1.1 2.4E-05 37.0 4.5 36 141-176 144-180 (329)
275 cd08246 crotonyl_coA_red croto 86.9 1.1 2.3E-05 38.5 4.6 36 141-176 192-228 (393)
276 PTZ00058 glutathione reductase 86.9 0.91 2E-05 41.5 4.3 34 143-176 237-270 (561)
277 PRK13984 putative oxidoreducta 86.9 1.1 2.3E-05 41.2 4.8 37 141-177 281-317 (604)
278 cd08232 idonate-5-DH L-idonate 86.9 0.74 1.6E-05 38.4 3.5 36 142-177 165-201 (339)
279 PTZ00317 NADP-dependent malic 86.8 5.2 0.00011 36.6 9.0 92 74-176 238-341 (559)
280 PLN02852 ferredoxin-NADP+ redu 86.8 1.4 3.1E-05 39.6 5.5 43 138-180 21-65 (491)
281 PRK12831 putative oxidoreducta 86.7 1.1 2.4E-05 39.8 4.7 37 140-176 278-314 (464)
282 PRK14191 bifunctional 5,10-met 86.7 1.3 2.8E-05 37.1 4.8 54 115-176 137-191 (285)
283 PF00743 FMO-like: Flavin-bind 86.7 1.2 2.7E-05 40.4 5.1 41 136-176 176-216 (531)
284 PRK12831 putative oxidoreducta 86.7 1.2 2.6E-05 39.6 4.9 37 140-176 137-173 (464)
285 PTZ00188 adrenodoxin reductase 86.7 2 4.3E-05 38.8 6.2 45 138-182 34-79 (506)
286 PRK06370 mercuric reductase; V 86.7 1.1 2.4E-05 39.6 4.6 35 143-177 171-205 (463)
287 PF13450 NAD_binding_8: NAD(P) 86.6 1.3 2.7E-05 28.6 3.8 31 148-178 1-31 (68)
288 cd08241 QOR1 Quinone oxidoredu 86.6 1.1 2.4E-05 36.3 4.4 36 141-176 138-174 (323)
289 cd05281 TDH Threonine dehydrog 86.5 1.3 2.7E-05 37.2 4.8 35 141-175 162-197 (341)
290 cd08261 Zn_ADH7 Alcohol dehydr 86.5 1.3 2.7E-05 37.0 4.7 35 141-175 158-192 (337)
291 PRK07846 mycothione reductase; 86.5 1.2 2.5E-05 39.5 4.7 35 143-177 166-200 (451)
292 PRK12770 putative glutamate sy 86.5 1.2 2.7E-05 37.8 4.7 37 142-178 17-53 (352)
293 PRK06292 dihydrolipoamide dehy 86.4 1.1 2.4E-05 39.5 4.5 36 142-177 168-203 (460)
294 cd05286 QOR2 Quinone oxidoredu 86.4 1.3 2.8E-05 35.8 4.7 37 140-176 134-171 (320)
295 PRK06416 dihydrolipoamide dehy 86.4 1.3 2.8E-05 39.0 5.0 35 143-177 172-206 (462)
296 PRK06115 dihydrolipoamide dehy 86.3 1.4 2.9E-05 39.2 5.1 35 143-177 174-208 (466)
297 PLN02206 UDP-glucuronate decar 86.3 1.3 2.8E-05 39.2 4.9 39 137-175 113-152 (442)
298 cd08286 FDH_like_ADH2 formalde 86.3 1.3 2.7E-05 37.1 4.7 37 140-176 164-201 (345)
299 TIGR01421 gluta_reduc_1 glutat 86.2 1.2 2.7E-05 39.3 4.7 35 143-177 166-200 (450)
300 cd08243 quinone_oxidoreductase 86.2 1.3 2.8E-05 36.1 4.6 36 141-176 141-177 (320)
301 PRK07877 hypothetical protein; 86.2 0.74 1.6E-05 43.4 3.4 47 128-175 89-140 (722)
302 PTZ00245 ubiquitin activating 86.1 1 2.3E-05 37.2 3.8 43 137-179 20-63 (287)
303 PRK10083 putative oxidoreducta 86.0 1.3 2.7E-05 37.0 4.5 36 141-176 159-196 (339)
304 TIGR03452 mycothione_red mycot 86.0 1.1 2.5E-05 39.5 4.4 35 143-177 169-203 (452)
305 PRK04523 N-acetylornithine car 86.0 5.4 0.00012 34.2 8.3 94 70-174 99-207 (335)
306 PRK05976 dihydrolipoamide dehy 85.9 1.3 2.9E-05 39.2 4.8 35 143-177 180-214 (472)
307 COG1086 Predicted nucleoside-d 85.9 2.3 4.9E-05 38.9 6.2 151 13-178 113-287 (588)
308 PRK04284 ornithine carbamoyltr 85.9 4.3 9.4E-05 34.7 7.7 73 95-176 116-190 (332)
309 PRK11749 dihydropyrimidine deh 85.9 1.3 2.9E-05 39.1 4.8 38 140-177 137-174 (457)
310 cd08287 FDH_like_ADH3 formalde 85.8 1.3 2.8E-05 37.0 4.5 36 141-176 167-203 (345)
311 KOG2336 Molybdopterin biosynth 85.8 0.78 1.7E-05 38.4 3.0 48 127-174 66-114 (422)
312 COG5322 Predicted dehydrogenas 85.8 0.83 1.8E-05 38.1 3.1 39 136-174 160-199 (351)
313 cd08259 Zn_ADH5 Alcohol dehydr 85.7 1.3 2.8E-05 36.4 4.4 36 141-176 161-197 (332)
314 TIGR01751 crot-CoA-red crotony 85.6 1.4 3.1E-05 38.0 4.7 36 141-176 188-224 (398)
315 TIGR03316 ygeW probable carbam 85.4 6.7 0.00015 33.9 8.7 69 101-176 135-211 (357)
316 PRK13771 putative alcohol dehy 85.4 0.96 2.1E-05 37.6 3.5 36 141-176 161-197 (334)
317 cd08248 RTN4I1 Human Reticulon 85.3 1.5 3.3E-05 36.6 4.7 34 142-175 162-196 (350)
318 cd08283 FDH_like_1 Glutathione 85.3 1.4 2.9E-05 38.0 4.4 36 141-176 183-219 (386)
319 TIGR00521 coaBC_dfp phosphopan 85.3 1.6 3.5E-05 38.1 4.9 38 139-176 181-235 (390)
320 cd08265 Zn_ADH3 Alcohol dehydr 85.3 1.6 3.4E-05 37.5 4.9 36 141-176 202-238 (384)
321 PRK06046 alanine dehydrogenase 85.3 1.3 2.8E-05 37.5 4.3 36 143-178 129-166 (326)
322 PLN00106 malate dehydrogenase 85.3 1.9 4E-05 36.8 5.2 35 142-176 17-54 (323)
323 PRK06567 putative bifunctional 85.3 1.7 3.6E-05 42.4 5.3 37 139-175 379-415 (1028)
324 PLN03129 NADP-dependent malic 85.2 2.6 5.7E-05 38.6 6.3 68 99-176 287-366 (581)
325 PRK07845 flavoprotein disulfid 85.2 1.7 3.6E-05 38.6 5.1 35 143-177 177-211 (466)
326 TIGR02819 fdhA_non_GSH formald 85.2 1.4 3E-05 38.2 4.5 35 141-175 184-219 (393)
327 PLN00016 RNA-binding protein; 85.2 1.1 2.3E-05 38.5 3.7 41 138-178 47-92 (378)
328 PRK07201 short chain dehydroge 85.1 1.5 3.2E-05 40.3 4.8 38 140-177 368-406 (657)
329 cd08252 AL_MDR Arginate lyase 85.1 1.4 3E-05 36.6 4.3 35 143-177 150-186 (336)
330 TIGR01317 GOGAT_sm_gam glutama 85.0 1.6 3.4E-05 39.1 4.8 36 141-176 141-176 (485)
331 cd08240 6_hydroxyhexanoate_dh_ 85.0 1.6 3.5E-05 36.7 4.7 34 142-175 175-209 (350)
332 cd05276 p53_inducible_oxidored 84.9 1.7 3.6E-05 35.2 4.6 36 141-176 138-174 (323)
333 cd05282 ETR_like 2-enoyl thioe 84.9 1.2 2.7E-05 36.5 3.9 36 141-176 137-173 (323)
334 cd05285 sorbitol_DH Sorbitol d 84.9 1.5 3.3E-05 36.7 4.5 38 139-176 159-197 (343)
335 PRK02102 ornithine carbamoyltr 84.8 5 0.00011 34.3 7.5 72 95-176 117-190 (331)
336 PRK06467 dihydrolipoamide dehy 84.8 1.6 3.5E-05 38.8 4.8 35 143-177 174-208 (471)
337 PRK07818 dihydrolipoamide dehy 84.8 1.7 3.7E-05 38.4 4.9 35 143-177 172-206 (466)
338 cd08250 Mgc45594_like Mgc45594 84.7 1.2 2.7E-05 36.8 3.8 36 141-176 138-174 (329)
339 PLN02507 glutathione reductase 84.6 1.6 3.5E-05 39.1 4.8 36 143-178 203-238 (499)
340 cd08279 Zn_ADH_class_III Class 84.6 1.1 2.5E-05 37.9 3.6 36 141-176 181-217 (363)
341 PRK09422 ethanol-active dehydr 84.6 1.4 2.9E-05 36.7 4.0 37 141-177 161-198 (338)
342 PRK08291 ectoine utilization p 84.6 1.9 4.2E-05 36.6 5.0 37 142-178 131-169 (330)
343 cd08253 zeta_crystallin Zeta-c 84.6 1.7 3.8E-05 35.2 4.6 36 141-176 143-179 (325)
344 PLN02353 probable UDP-glucose 84.4 3.5 7.6E-05 37.0 6.7 39 140-178 321-369 (473)
345 PRK10262 thioredoxin reductase 84.2 1.8 3.9E-05 36.1 4.6 37 140-176 143-179 (321)
346 cd05279 Zn_ADH1 Liver alcohol 84.2 1.2 2.6E-05 38.0 3.5 36 141-176 182-218 (365)
347 cd08254 hydroxyacyl_CoA_DH 6-h 84.0 1.9 4.2E-05 35.6 4.7 36 141-176 164-199 (338)
348 PRK14727 putative mercuric red 83.9 1.6 3.6E-05 38.8 4.5 33 143-175 188-220 (479)
349 PRK10754 quinone oxidoreductas 83.9 1.9 4.1E-05 35.7 4.6 37 140-176 138-175 (327)
350 cd08267 MDR1 Medium chain dehy 83.8 1.8 4E-05 35.2 4.5 34 141-174 142-176 (319)
351 TIGR02371 ala_DH_arch alanine 83.8 1.6 3.6E-05 37.0 4.2 37 143-179 128-166 (325)
352 PLN02172 flavin-containing mon 83.7 1.6 3.4E-05 39.0 4.2 39 138-176 199-237 (461)
353 cd08268 MDR2 Medium chain dehy 83.7 2 4.3E-05 35.0 4.6 36 141-176 143-179 (328)
354 cd05212 NAD_bind_m-THF_DH_Cycl 83.7 2.3 5.1E-05 31.7 4.5 54 116-177 9-63 (140)
355 PLN02546 glutathione reductase 83.7 1.8 3.9E-05 39.6 4.6 36 142-177 251-286 (558)
356 KOG1800 Ferredoxin/adrenodoxin 83.5 11 0.00024 33.2 9.0 82 77-164 86-180 (468)
357 TIGR01424 gluta_reduc_2 glutat 83.4 1.8 4E-05 38.0 4.5 35 143-177 166-200 (446)
358 PRK04965 NADH:flavorubredoxin 83.4 2.2 4.7E-05 36.6 4.9 36 142-177 140-175 (377)
359 PRK03515 ornithine carbamoyltr 83.4 6.2 0.00013 33.8 7.5 73 95-176 116-191 (336)
360 TIGR02817 adh_fam_1 zinc-bindi 83.4 1.3 2.7E-05 36.8 3.4 35 143-177 149-185 (336)
361 PRK13748 putative mercuric red 83.4 1.8 4E-05 39.1 4.6 33 143-175 270-302 (561)
362 cd08244 MDR_enoyl_red Possible 83.4 2.1 4.6E-05 35.1 4.6 36 141-176 141-177 (324)
363 PRK05855 short chain dehydroge 83.3 2.1 4.6E-05 38.2 4.9 40 138-177 310-350 (582)
364 TIGR02053 MerA mercuric reduct 83.3 1.9 4.1E-05 38.1 4.5 35 143-177 166-200 (463)
365 cd08238 sorbose_phosphate_red 83.2 2.1 4.5E-05 37.2 4.7 35 142-176 175-213 (410)
366 TIGR00658 orni_carb_tr ornithi 83.2 5.9 0.00013 33.4 7.3 72 96-177 111-183 (304)
367 PRK08010 pyridine nucleotide-d 83.2 2.4 5.2E-05 37.2 5.1 35 143-177 158-192 (441)
368 cd08235 iditol_2_DH_like L-idi 83.2 1.8 4E-05 36.0 4.3 36 141-176 164-200 (343)
369 TIGR01350 lipoamide_DH dihydro 83.1 2 4.3E-05 37.8 4.7 35 143-177 170-204 (461)
370 PRK14694 putative mercuric red 83.1 1.8 4E-05 38.3 4.4 33 143-175 178-210 (468)
371 PRK12779 putative bifunctional 83.1 1.9 4.1E-05 41.9 4.8 38 140-177 303-340 (944)
372 TIGR03385 CoA_CoA_reduc CoA-di 83.1 2.1 4.6E-05 37.2 4.8 36 142-177 136-171 (427)
373 TIGR01285 nifN nitrogenase mol 83.0 16 0.00035 32.3 10.2 35 138-172 306-340 (432)
374 cd05289 MDR_like_2 alcohol deh 83.0 2.1 4.6E-05 34.5 4.5 35 141-175 143-178 (309)
375 KOG2250 Glutamate/leucine/phen 82.7 2.1 4.6E-05 38.3 4.5 38 138-175 246-283 (514)
376 cd08266 Zn_ADH_like1 Alcohol d 82.7 2.3 5E-05 34.9 4.7 37 140-176 164-201 (342)
377 COG0493 GltD NADPH-dependent g 82.6 2.5 5.5E-05 37.7 5.0 42 137-178 117-158 (457)
378 PTZ00354 alcohol dehydrogenase 82.6 2 4.3E-05 35.4 4.2 35 142-176 140-175 (334)
379 cd01079 NAD_bind_m-THF_DH NAD 82.4 3.1 6.6E-05 32.9 4.9 38 136-173 55-93 (197)
380 TIGR03140 AhpF alkyl hydropero 82.3 2.2 4.7E-05 38.4 4.6 34 142-175 351-384 (515)
381 TIGR01292 TRX_reduct thioredox 82.3 2.5 5.3E-05 34.3 4.6 37 140-176 138-174 (300)
382 PTZ00153 lipoamide dehydrogena 82.3 2 4.4E-05 40.1 4.5 35 143-177 312-346 (659)
383 PRK00779 ornithine carbamoyltr 82.2 6.3 0.00014 33.2 7.1 71 96-176 115-186 (304)
384 PLN02702 L-idonate 5-dehydroge 82.2 2.3 4.9E-05 36.1 4.5 35 141-175 180-215 (364)
385 PRK06912 acoL dihydrolipoamide 82.1 2.3 4.9E-05 37.6 4.6 35 143-177 170-204 (458)
386 PRK08132 FAD-dependent oxidore 82.1 2.2 4.9E-05 38.5 4.7 37 142-178 22-58 (547)
387 cd08263 Zn_ADH10 Alcohol dehyd 82.0 2.2 4.8E-05 36.2 4.4 35 141-175 186-221 (367)
388 PRK00856 pyrB aspartate carbam 81.9 8 0.00017 32.6 7.6 70 98-177 120-193 (305)
389 PRK05396 tdh L-threonine 3-deh 81.8 2.6 5.7E-05 35.2 4.7 35 141-175 162-197 (341)
390 TIGR00692 tdh L-threonine 3-de 81.8 2.5 5.5E-05 35.3 4.6 35 141-175 160-195 (340)
391 PRK08125 bifunctional UDP-gluc 81.7 2.3 5E-05 39.5 4.7 39 139-177 311-351 (660)
392 PRK09853 putative selenate red 81.7 2.1 4.6E-05 41.9 4.5 38 140-177 536-573 (1019)
393 cd08290 ETR 2-enoyl thioester 81.7 2.2 4.9E-05 35.5 4.2 35 142-176 146-181 (341)
394 TIGR01408 Ube1 ubiquitin-activ 81.6 1.6 3.5E-05 42.7 3.7 38 138-175 414-457 (1008)
395 cd08236 sugar_DH NAD(P)-depend 81.6 2.4 5.2E-05 35.3 4.4 35 142-176 159-194 (343)
396 TIGR01423 trypano_reduc trypan 81.5 2.4 5.2E-05 38.0 4.6 35 143-177 187-224 (486)
397 TIGR03143 AhpF_homolog putativ 81.4 2.7 5.8E-05 38.3 4.9 36 141-176 141-176 (555)
398 TIGR01408 Ube1 ubiquitin-activ 81.4 1.5 3.3E-05 42.9 3.4 41 138-178 19-60 (1008)
399 cd08291 ETR_like_1 2-enoyl thi 81.3 2.3 5.1E-05 35.3 4.2 35 142-176 142-178 (324)
400 PRK08105 flavodoxin; Provision 81.2 2.3 5E-05 31.9 3.7 33 139-171 80-120 (149)
401 cd08256 Zn_ADH2 Alcohol dehydr 81.2 2.4 5.1E-05 35.6 4.2 35 141-175 173-208 (350)
402 PRK07364 2-octaprenyl-6-methox 81.2 3.4 7.3E-05 35.6 5.3 36 143-178 18-53 (415)
403 PLN02985 squalene monooxygenas 81.1 7.3 0.00016 35.2 7.5 41 137-177 37-77 (514)
404 PRK09564 coenzyme A disulfide 80.7 2.8 6.1E-05 36.6 4.6 35 142-176 148-182 (444)
405 cd08258 Zn_ADH4 Alcohol dehydr 80.6 1.9 4.1E-05 35.7 3.4 32 142-173 164-195 (306)
406 PTZ00052 thioredoxin reductase 80.5 2.4 5.3E-05 38.0 4.3 33 143-175 182-214 (499)
407 cd08276 MDR7 Medium chain dehy 80.5 3.1 6.6E-05 34.2 4.6 35 142-176 160-194 (336)
408 cd00316 Oxidoreductase_nitroge 80.4 20 0.00043 30.7 9.8 35 139-173 275-309 (399)
409 cd05278 FDH_like Formaldehyde 80.2 3.2 6.9E-05 34.6 4.7 36 141-176 166-202 (347)
410 PRK10537 voltage-gated potassi 80.2 2.6 5.7E-05 36.8 4.2 34 142-175 239-272 (393)
411 COG0190 FolD 5,10-methylene-te 80.1 2.6 5.6E-05 35.2 4.0 42 137-178 150-192 (283)
412 cd08297 CAD3 Cinnamyl alcohol 80.1 3 6.5E-05 34.7 4.5 35 142-176 165-200 (341)
413 PRK12778 putative bifunctional 79.7 3.2 6.8E-05 39.3 4.9 37 140-176 428-464 (752)
414 PRK11749 dihydropyrimidine deh 79.6 3 6.5E-05 36.8 4.5 34 142-175 272-306 (457)
415 PRK15317 alkyl hydroperoxide r 79.5 3.1 6.7E-05 37.5 4.6 36 141-176 349-384 (517)
416 PRK12562 ornithine carbamoyltr 79.3 16 0.00036 31.2 8.7 74 95-176 116-191 (334)
417 COG0476 ThiF Dinucleotide-util 79.3 2.8 6.1E-05 34.0 3.9 41 138-178 25-66 (254)
418 smart00829 PKS_ER Enoylreducta 79.3 3.6 7.9E-05 32.6 4.6 36 141-176 103-139 (288)
419 PRK02255 putrescine carbamoylt 79.3 21 0.00045 30.6 9.3 73 97-176 115-188 (338)
420 PF00289 CPSase_L_chain: Carba 79.2 1.4 3E-05 31.4 1.9 33 144-176 3-35 (110)
421 PRK06407 ornithine cyclodeamin 79.1 3.1 6.8E-05 34.9 4.2 37 142-178 116-154 (301)
422 PLN02166 dTDP-glucose 4,6-dehy 79.1 4 8.6E-05 36.1 5.1 39 137-175 114-153 (436)
423 PRK05928 hemD uroporphyrinogen 79.0 4.1 8.9E-05 32.2 4.8 62 95-172 93-154 (249)
424 cd08272 MDR6 Medium chain dehy 79.0 3.3 7.1E-05 33.7 4.3 36 140-175 142-178 (326)
425 PF02629 CoA_binding: CoA bind 78.9 1.7 3.8E-05 29.8 2.2 35 143-177 3-39 (96)
426 cd08249 enoyl_reductase_like e 78.9 4.5 9.7E-05 33.9 5.2 34 140-173 152-186 (339)
427 COG0540 PyrB Aspartate carbamo 78.7 3.5 7.6E-05 34.9 4.3 93 72-176 97-194 (316)
428 smart00859 Semialdhyde_dh Semi 78.6 3.6 7.8E-05 29.2 3.9 28 145-172 1-30 (122)
429 cd08273 MDR8 Medium chain dehy 78.6 3.8 8.2E-05 33.8 4.6 35 140-174 137-172 (331)
430 PRK11891 aspartate carbamoyltr 78.6 12 0.00026 33.2 7.8 98 71-177 177-279 (429)
431 cd01493 APPBP1_RUB Ubiquitin a 78.4 2.7 5.8E-05 37.2 3.8 39 138-176 15-54 (425)
432 PRK09004 FMN-binding protein M 78.4 22 0.00048 26.4 8.3 33 139-171 78-118 (146)
433 PLN02686 cinnamoyl-CoA reducta 78.3 3.5 7.6E-05 35.3 4.4 37 139-175 49-86 (367)
434 PF03447 NAD_binding_3: Homose 78.3 1.5 3.3E-05 31.0 1.9 25 150-174 1-29 (117)
435 PRK07200 aspartate/ornithine c 78.1 30 0.00066 30.4 10.1 68 102-176 153-228 (395)
436 cd05195 enoyl_red enoyl reduct 77.8 4.4 9.5E-05 32.1 4.6 35 141-175 107-142 (293)
437 KOG2018 Predicted dinucleotide 77.7 2 4.3E-05 36.6 2.6 46 129-174 57-106 (430)
438 COG2344 AT-rich DNA-binding pr 77.7 2.8 6E-05 33.1 3.2 34 144-177 85-121 (211)
439 TIGR00670 asp_carb_tr aspartat 77.5 4.5 9.8E-05 34.1 4.7 71 97-177 113-187 (301)
440 cd05212 NAD_bind_m-THF_DH_Cycl 77.3 27 0.00059 25.9 9.3 93 13-110 25-122 (140)
441 PRK14183 bifunctional 5,10-met 77.0 5 0.00011 33.5 4.8 40 137-176 151-191 (281)
442 cd08262 Zn_ADH8 Alcohol dehydr 76.9 4.4 9.6E-05 33.7 4.6 34 141-174 160-194 (341)
443 PRK06823 ornithine cyclodeamin 76.8 3.8 8.2E-05 34.7 4.1 38 142-179 127-166 (315)
444 PRK12770 putative glutamate sy 76.7 4 8.6E-05 34.7 4.3 36 140-175 169-205 (352)
445 PRK14170 bifunctional 5,10-met 76.6 4 8.7E-05 34.1 4.1 54 115-176 137-191 (284)
446 TIGR03315 Se_ygfK putative sel 76.4 4 8.8E-05 40.0 4.6 37 141-177 535-571 (1012)
447 PRK12359 flavodoxin FldB; Prov 76.0 3.7 8E-05 31.7 3.5 36 139-174 75-120 (172)
448 TIGR02824 quinone_pig3 putativ 75.9 5.1 0.00011 32.5 4.6 36 141-176 138-174 (325)
449 PLN02463 lycopene beta cyclase 75.9 4 8.6E-05 36.3 4.2 34 143-176 28-61 (447)
450 PRK01747 mnmC bifunctional tRN 75.9 4.9 0.00011 37.4 4.9 92 77-176 198-293 (662)
451 PLN02527 aspartate carbamoyltr 75.7 18 0.00039 30.5 7.9 71 96-176 113-188 (306)
452 TIGR02374 nitri_red_nirB nitri 75.7 4.6 0.0001 38.4 4.8 36 143-178 140-175 (785)
453 KOG0399 Glutamate synthase [Am 75.6 4 8.6E-05 40.7 4.2 41 137-177 1779-1819(2142)
454 PRK13814 pyrB aspartate carbam 75.5 13 0.00029 31.4 7.1 77 90-176 111-194 (310)
455 PRK12779 putative bifunctional 75.5 4.6 0.0001 39.3 4.8 37 139-175 443-479 (944)
456 COG0686 Ald Alanine dehydrogen 75.3 4 8.6E-05 34.8 3.7 40 139-178 164-203 (371)
457 COG0604 Qor NADPH:quinone redu 74.5 2.6 5.7E-05 35.7 2.6 34 143-176 143-177 (326)
458 cd01977 Nitrogenase_VFe_alpha 74.4 47 0.001 29.0 10.5 112 55-171 61-193 (415)
459 cd01965 Nitrogenase_MoFe_beta_ 74.2 34 0.00073 30.0 9.6 33 139-171 295-327 (428)
460 PRK12775 putative trifunctiona 74.0 5.3 0.00011 39.2 4.8 37 141-177 428-464 (1006)
461 PLN00093 geranylgeranyl diphos 74.0 4.8 0.0001 35.7 4.2 33 144-176 40-72 (450)
462 PLN02464 glycerol-3-phosphate 74.0 5.2 0.00011 37.1 4.6 43 144-187 72-114 (627)
463 KOG2012 Ubiquitin activating e 73.9 1.3 2.8E-05 42.1 0.6 46 137-182 31-77 (1013)
464 TIGR01438 TGR thioredoxin and 73.8 3.9 8.4E-05 36.6 3.6 32 144-175 181-212 (484)
465 PRK14989 nitrite reductase sub 73.8 5.2 0.00011 38.5 4.6 35 143-177 145-179 (847)
466 PRK06703 flavodoxin; Provision 73.7 5.6 0.00012 29.4 4.0 32 140-171 79-118 (151)
467 PLN02819 lysine-ketoglutarate 73.5 4.6 0.0001 39.7 4.2 37 142-178 568-618 (1042)
468 PRK08294 phenol 2-monooxygenas 73.5 5.5 0.00012 37.0 4.6 36 143-178 32-68 (634)
469 PRK12778 putative bifunctional 73.4 4.6 0.0001 38.1 4.2 36 140-175 567-603 (752)
470 PF02423 OCD_Mu_crystall: Orni 73.2 4.8 0.0001 33.9 3.9 34 144-177 129-164 (313)
471 PRK14166 bifunctional 5,10-met 73.0 5.6 0.00012 33.3 4.1 54 116-177 138-192 (282)
472 TIGR01373 soxB sarcosine oxida 73.0 15 0.00032 31.6 7.0 38 139-176 26-65 (407)
473 PRK15057 UDP-glucose 6-dehydro 72.5 6.3 0.00014 34.3 4.5 40 141-180 294-343 (388)
474 KOG1200 Mitochondrial/plastidi 72.3 4.1 9E-05 32.6 3.0 39 140-178 11-50 (256)
475 PRK06199 ornithine cyclodeamin 72.1 5.4 0.00012 34.7 4.0 36 143-178 155-193 (379)
476 PRK14187 bifunctional 5,10-met 71.8 6.8 0.00015 32.9 4.4 41 137-177 154-195 (294)
477 PRK12810 gltD glutamate syntha 71.7 7.8 0.00017 34.4 5.0 35 140-174 278-313 (471)
478 PRK14172 bifunctional 5,10-met 71.5 6.2 0.00013 32.9 4.0 41 137-177 152-193 (278)
479 PRK07308 flavodoxin; Validated 71.0 4.9 0.00011 29.6 3.1 32 140-171 79-118 (146)
480 PRK07589 ornithine cyclodeamin 70.9 6.4 0.00014 33.8 4.1 36 143-178 129-166 (346)
481 PTZ00367 squalene epoxidase; P 70.8 11 0.00023 34.7 5.8 35 142-176 32-66 (567)
482 PRK06975 bifunctional uroporph 70.8 7.6 0.00016 36.3 4.9 143 14-173 1-169 (656)
483 TIGR01283 nifE nitrogenase mol 70.8 13 0.00029 32.9 6.3 36 138-173 321-356 (456)
484 TIGR02114 coaB_strep phosphopa 70.7 4.4 9.5E-05 32.5 2.9 26 150-175 23-48 (227)
485 PLN02927 antheraxanthin epoxid 70.6 7.6 0.00016 36.4 4.8 37 140-176 78-114 (668)
486 PRK12814 putative NADPH-depend 70.5 6.5 0.00014 36.6 4.4 35 141-175 321-356 (652)
487 cd03466 Nitrogenase_NifN_2 Nit 70.4 49 0.0011 29.1 9.7 34 140-173 297-330 (429)
488 PRK14177 bifunctional 5,10-met 70.3 7.1 0.00015 32.7 4.1 41 137-177 153-194 (284)
489 PLN02696 1-deoxy-D-xylulose-5- 70.1 7.3 0.00016 34.8 4.4 32 144-175 58-92 (454)
490 PRK14169 bifunctional 5,10-met 70.1 7.7 0.00017 32.4 4.3 52 116-175 137-189 (282)
491 cd01080 NAD_bind_m-THF_DH_Cycl 70.1 47 0.001 25.4 9.1 92 15-110 43-150 (168)
492 PLN02516 methylenetetrahydrofo 70.1 7.5 0.00016 32.8 4.3 41 137-177 161-202 (299)
493 COG0794 GutQ Predicted sugar p 69.8 11 0.00025 29.9 5.0 33 143-175 39-74 (202)
494 PLN02735 carbamoyl-phosphate s 69.4 5.9 0.00013 39.3 4.0 35 143-177 23-68 (1102)
495 PF01946 Thi4: Thi4 family; PD 69.2 6.5 0.00014 31.8 3.5 37 143-179 17-53 (230)
496 PF00258 Flavodoxin_1: Flavodo 69.2 5.3 0.00011 29.0 2.9 34 138-171 82-123 (143)
497 TIGR00292 thiazole biosynthesi 69.1 7.7 0.00017 31.7 4.1 37 142-178 20-56 (254)
498 PRK14186 bifunctional 5,10-met 68.8 8.4 0.00018 32.5 4.3 53 116-176 139-192 (297)
499 PLN00112 malate dehydrogenase 68.7 6.6 0.00014 35.0 3.8 39 144-182 101-149 (444)
500 TIGR03882 cyclo_dehyd_2 bacter 68.4 3 6.5E-05 32.7 1.5 65 94-170 65-133 (193)
No 1
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=4.9e-36 Score=255.03 Aligned_cols=173 Identities=54% Similarity=0.864 Sum_probs=145.4
Q ss_pred ccccCCCCCCcceEEEeCCCCCCchhHHHHHhhcccCceeeeCch-hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEE
Q 044056 6 EGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFL-SMHSLYASYGT-SEQMIASDSNVITRANPMNLII 83 (189)
Q Consensus 6 ~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~ 83 (189)
++--+++++.+||||++.+..+....+.++.++.++.+.+...+. ++.+.++++|+ +.+..++++++++.+|+||||+
T Consensus 8 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~ 87 (347)
T PLN02928 8 DKRVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIM 87 (347)
T ss_pred hhhccCCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEE
Confidence 333466778889999998876654455667776665444443444 77888999999 6666789999999999999999
Q ss_pred EcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC------------CCCCCCCCCCEEEEEcC
Q 044056 84 RFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI------------VPTGETLLGKTVFISGF 151 (189)
Q Consensus 84 ~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~------------~~~~~~l~gktvGIvG~ 151 (189)
+.++|+|++|++++.++||.|+|+|+++++++++||||+++++|+++|++. ...+.+|.||||||||+
T Consensus 88 ~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~ 167 (347)
T PLN02928 88 QFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGY 167 (347)
T ss_pred ECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECC
Confidence 999999999999999999999999997544889999999999999999987 12356899999999999
Q ss_pred CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 152 GNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 152 G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
|+||+++|++|++|||+|++|||+.++
T Consensus 168 G~IG~~vA~~l~afG~~V~~~dr~~~~ 194 (347)
T PLN02928 168 GAIGIELAKRLRPFGVKLLATRRSWTS 194 (347)
T ss_pred CHHHHHHHHHHhhCCCEEEEECCCCCh
Confidence 999999999999999999999998543
No 2
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-35 Score=247.23 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=128.6
Q ss_pred ceEEEeCCCCCCchhHHHHHhhcccCceeeeC-ch-hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcCC
Q 044056 17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF-FL-SMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGVD 93 (189)
Q Consensus 17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id 93 (189)
|||+++++..-. . ...+.++...++..... +. ++.+.++++|+ +.+..++++++++++|+||||++.|+|+|+||
T Consensus 1 mki~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 78 (311)
T PRK08410 1 MKIVILDAKTLG-D-KDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVD 78 (311)
T ss_pred CeEEEEecCCCC-h-hhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEccccccccc
Confidence 468877764211 1 12244544434433332 23 67788999999 66667899999999999999999999999999
Q ss_pred hhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------CC----------CCCCCCCCEEEEEcCCH
Q 044056 94 IDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------VP----------TGETLLGKTVFISGFGN 153 (189)
Q Consensus 94 ~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~~----------~~~~l~gktvGIvG~G~ 153 (189)
+++++++||.|+|+||+ ++++||||+++++|++.|+++ .. .+.+|+||||||||+|+
T Consensus 79 ~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~ 155 (311)
T PRK08410 79 IEYAKKKGIAVKNVAGY---STESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGT 155 (311)
T ss_pred HHHHHhCCCEEEcCCCC---CChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCH
Confidence 99999999999999999 899999999999999999997 11 13689999999999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 154 IGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 154 IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
||+++|+++++|||+|++|||+.+.
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~ 180 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKN 180 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCccc
Confidence 9999999999999999999997643
No 3
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=7.1e-35 Score=245.33 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=128.7
Q ss_pred ceEEEeCCCCCCchhHHHHHhh-cccCceeeeCc-h-hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcC
Q 044056 17 TLVLFRGPHFPASHNYAKGYLQ-NYLSIKGLCFF-L-SMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGV 92 (189)
Q Consensus 17 ~~ilv~~~~~~~~~~~~~~~l~-~~~~~~~~~~~-~-~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~i 92 (189)
|||++++...-.......+.++ .++++.+.... + ++.+.++++|+ +.+..++++++++++|+||||++.|+|+||+
T Consensus 1 m~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 80 (317)
T PRK06487 1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV 80 (317)
T ss_pred CeEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence 4677776642111111223343 34555554432 2 67888999999 6666789999999999999999999999999
Q ss_pred ChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C--C--------CCCCCCCCEEEEEcCC
Q 044056 93 DIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V--P--------TGETLLGKTVFISGFG 152 (189)
Q Consensus 93 d~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~--~--------~~~~l~gktvGIvG~G 152 (189)
|++++.++||.|+|+||+ ++++||||+++++|++.|++. . . .+.+|.||||||||+|
T Consensus 81 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G 157 (317)
T PRK06487 81 DLAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHG 157 (317)
T ss_pred CHHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCC
Confidence 999999999999999999 889999999999999999997 1 1 2358999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 153 NIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 153 ~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+||+++|+++++|||+|++|||+.+
T Consensus 158 ~IG~~vA~~l~~fgm~V~~~~~~~~ 182 (317)
T PRK06487 158 ELGGAVARLAEAFGMRVLIGQLPGR 182 (317)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCC
Confidence 9999999999999999999999754
No 4
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=8e-35 Score=244.88 Aligned_cols=123 Identities=28% Similarity=0.376 Sum_probs=114.7
Q ss_pred HHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHH
Q 044056 52 MHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129 (189)
Q Consensus 52 ~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~ 129 (189)
+.+.++++|+ +.. ..+++.++++++|+||+|+..|+||||||+++++++||.|+|+|++ ..++||||++++||++
T Consensus 38 ~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa~ 114 (324)
T COG1052 38 LAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILAL 114 (324)
T ss_pred HHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHHH
Confidence 4777899999 554 6899999999999999999999999999999999999999999999 6699999999999999
Q ss_pred HhcCC-------------C-----CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 130 LRKHI-------------V-----PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 130 ~R~~~-------------~-----~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.|++. . ..+.+++|||+||+|+|+||+++|+++++|||+|+||||+++
T Consensus 115 ~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~ 180 (324)
T COG1052 115 ARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN 180 (324)
T ss_pred hhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 99998 1 445799999999999999999999999999999999999985
No 5
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=9.7e-35 Score=244.48 Aligned_cols=158 Identities=28% Similarity=0.341 Sum_probs=132.2
Q ss_pred CcceEEEeCCCCCCchhHHHHHhhcccCceeeeC---ch-hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCC
Q 044056 15 SITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF---FL-SMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGL 89 (189)
Q Consensus 15 ~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~ 89 (189)
.|++++..++..+.. +.++... .+.++... ++ ++.+.++++|+ ++..+++++++++.+|+||||++.|+|+
T Consensus 2 ~~~~vl~~~~~~~~~---~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gv 77 (324)
T COG0111 2 MMIKVLVTDPLAPDA---LEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGV 77 (324)
T ss_pred CcceeeccCccCHHH---HHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEccccc
Confidence 467888888775543 2222222 22333222 22 56788999998 5577899999999999999999999999
Q ss_pred CcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCCHHH
Q 044056 90 EGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGNIG 155 (189)
Q Consensus 90 d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G~IG 155 (189)
|+||+++++++||.|+|+|+. |+.+||||+++++|+++|+++ ...+.+|+||||||||+|+||
T Consensus 78 d~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG 154 (324)
T COG0111 78 DNIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIG 154 (324)
T ss_pred cccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHH
Confidence 999999999999999999998 999999999999999999999 245679999999999999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCc
Q 044056 156 VELAKRLRPFGVKIIAAKRSWASH 179 (189)
Q Consensus 156 ~~vA~~l~afG~~V~~~~r~~~~~ 179 (189)
+++|++|++|||+|++|||+.++.
T Consensus 155 ~~va~~l~afgm~v~~~d~~~~~~ 178 (324)
T COG0111 155 RAVAKRLKAFGMKVIGYDPYSPRE 178 (324)
T ss_pred HHHHHHHHhCCCeEEEECCCCchh
Confidence 999999999999999999965553
No 6
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.3e-34 Score=244.15 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=130.3
Q ss_pred cceEEEeCCCCCCchhHHHHHhhcccCceeeeC----ch-hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCC
Q 044056 16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF----FL-SMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGL 89 (189)
Q Consensus 16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~ 89 (189)
+|+|+++++..+.. .+.++...++.+... +. ++.+.++++|+ +.+..++++++++++|+||||++.|+|+
T Consensus 2 ~~~vl~~~~~~~~~----~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~ 77 (323)
T PRK15409 2 KPSVILYKALPDDL----LQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGY 77 (323)
T ss_pred CceEEEeCCCCHHH----HHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceec
Confidence 37899999874332 344444334433221 22 56778899999 6565689999999999999999999999
Q ss_pred CcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C--C-----CCCCCCCCEEEEEcCC
Q 044056 90 EGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V--P-----TGETLLGKTVFISGFG 152 (189)
Q Consensus 90 d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~--~-----~~~~l~gktvGIvG~G 152 (189)
|+||++++.++||+|+|+||+ ++++||||++++||+++|+++ . . .+.+|+||||||||+|
T Consensus 78 d~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G 154 (323)
T PRK15409 78 DNFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG 154 (323)
T ss_pred ccccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence 999999999999999999999 899999999999999999997 1 1 3568999999999999
Q ss_pred HHHHHHHHHHc-cCCCEEEEEcCCCCC
Q 044056 153 NIGVELAKRLR-PFGVKIIAAKRSWAS 178 (189)
Q Consensus 153 ~IG~~vA~~l~-afG~~V~~~~r~~~~ 178 (189)
+||+++|++++ +|||+|+||||+.++
T Consensus 155 ~IG~~va~~l~~~fgm~V~~~~~~~~~ 181 (323)
T PRK15409 155 RIGMALAQRAHFGFNMPILYNARRHHK 181 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCch
Confidence 99999999998 999999999998543
No 7
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-34 Score=240.21 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=113.6
Q ss_pred hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHH
Q 044056 51 SMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129 (189)
Q Consensus 51 ~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~ 129 (189)
++.+.++++|+ +.+..++++++++++|+||||++.++|+|+||++++.++||.|+|+||+ ++++||||+++++|++
T Consensus 37 ~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~l~~ 113 (314)
T PRK06932 37 QTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMIFAL 113 (314)
T ss_pred HHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHHHHH
Confidence 67888999999 6666789999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HhcCC----------CC----------CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 130 LRKHI----------VP----------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 130 ~R~~~----------~~----------~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|+++ .. .+.+|+||||||||+|+||+++|+++++|||+|++||++.
T Consensus 114 ~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~ 180 (314)
T PRK06932 114 KHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG 180 (314)
T ss_pred HhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence 99987 11 2368999999999999999999999999999999999864
No 8
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=8.7e-34 Score=245.84 Aligned_cols=159 Identities=21% Similarity=0.144 Sum_probs=130.8
Q ss_pred CCCCcceEEEeCCCCCCchhHHHHHhhcc-c-Cceeee--Cch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEE
Q 044056 12 SDKSITLVLFRGPHFPASHNYAKGYLQNY-L-SIKGLC--FFL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIR 84 (189)
Q Consensus 12 ~~~~~~~ilv~~~~~~~~~~~~~~~l~~~-~-~~~~~~--~~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~ 84 (189)
.-++||+|+++++..+.. .+.++.. . ++.... .++ ++.+.++++|+ ++. ..++++++++++|+||||++
T Consensus 6 ~~~~~~~ili~~~~~~~~----~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~ 81 (409)
T PRK11790 6 LPKDKIKFLLLEGVHQSA----VEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGC 81 (409)
T ss_pred CCCCCeEEEEECCCCHHH----HHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEE
Confidence 445678999998664332 2344332 1 232221 122 66778899999 443 45899999999999999999
Q ss_pred cCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C----CCCCCCCCCEEEEEc
Q 044056 85 FRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V----PTGETLLGKTVFISG 150 (189)
Q Consensus 85 ~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~----~~~~~l~gktvGIvG 150 (189)
.|+|+||||+++++++||.|+|+||+ ++++||||+++++|++.|+++ . ..+.+|.||||||||
T Consensus 82 ~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG 158 (409)
T PRK11790 82 FCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVG 158 (409)
T ss_pred CceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEEC
Confidence 99999999999999999999999999 899999999999999999997 1 235799999999999
Q ss_pred CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 151 FGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 151 ~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+|+||+++|+++++|||+|++|||+..
T Consensus 159 ~G~IG~~vA~~~~~fGm~V~~~d~~~~ 185 (409)
T PRK11790 159 YGHIGTQLSVLAESLGMRVYFYDIEDK 185 (409)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 999999999999999999999998754
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=4.6e-33 Score=235.77 Aligned_cols=155 Identities=20% Similarity=0.287 Sum_probs=128.1
Q ss_pred ceEEEeCCCCCCchhHHHHHhhcccCceeee----Cch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCC
Q 044056 17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLC----FFL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGL 89 (189)
Q Consensus 17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~ 89 (189)
|||+++.+..+.. .+.++...++.+.. .+. ++.+.++++|+ +.+ ..++++++++++|+||||++.|+|+
T Consensus 3 ~kil~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~ 78 (333)
T PRK13243 3 PKVFITREIPENG----IEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY 78 (333)
T ss_pred ceEEEECCCCHHH----HHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence 7899888653322 23344322343322 122 56778899999 554 3589999999999999999999999
Q ss_pred CcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------CC-----------CCCCCCCCEEEE
Q 044056 90 EGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------VP-----------TGETLLGKTVFI 148 (189)
Q Consensus 90 d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~~-----------~~~~l~gktvGI 148 (189)
||||+++++++||.|+|+||+ ++++||||++++||++.|+++ .. .+.+|+||||||
T Consensus 79 d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI 155 (333)
T PRK13243 79 DNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI 155 (333)
T ss_pred cccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence 999999999999999999999 899999999999999999987 11 246899999999
Q ss_pred EcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 149 SGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 149 vG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
||+|+||+.+|++|++|||+|++|||++++
T Consensus 156 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~ 185 (333)
T PRK13243 156 IGFGRIGQAVARRAKGFGMRILYYSRTRKP 185 (333)
T ss_pred ECcCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence 999999999999999999999999998654
No 10
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-32 Score=232.74 Aligned_cols=158 Identities=19% Similarity=0.213 Sum_probs=135.9
Q ss_pred cceEEEeCCCCCCchhHHHHHhhcccCceeeeCc----hhHHhhcCCCeE-Eec-CCCCCHHHHhcCC--CCeEEEEcCC
Q 044056 16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFF----LSMHSLYASYGT-SEQ-MIASDSNVITRAN--PMNLIIRFRV 87 (189)
Q Consensus 16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~adv-i~~-~~~~~~~~l~~~p--~Lk~I~~~~a 87 (189)
||||++++.. +...++..++++.+ ++++...+ ++..+.++++|+ +++ ..++++++++++| +||||++.++
T Consensus 1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~ 78 (330)
T PRK12480 1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA 78 (330)
T ss_pred CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence 5999999987 44556677777665 55555532 256788999999 554 4589999999997 8999999999
Q ss_pred CCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------C-------CCCCCCCCCEEEEEcCC
Q 044056 88 GLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------V-------PTGETLLGKTVFISGFG 152 (189)
Q Consensus 88 G~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------~-------~~~~~l~gktvGIvG~G 152 (189)
|+|+||++++.++||.|+|+||+ ++++||||+++++|++.|+++ . ..+++|+|+||||||+|
T Consensus 79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G 155 (330)
T PRK12480 79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG 155 (330)
T ss_pred ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence 99999999999999999999999 889999999999999999987 1 13568999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 153 NIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 153 ~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
+||+.+|++|++|||+|++||++...
T Consensus 156 ~IG~~vA~~L~~~G~~V~~~d~~~~~ 181 (330)
T PRK12480 156 RIGAATAKIYAGFGATITAYDAYPNK 181 (330)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChhH
Confidence 99999999999999999999998654
No 11
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.98 E-value=9e-32 Score=239.89 Aligned_cols=154 Identities=31% Similarity=0.354 Sum_probs=129.5
Q ss_pred ceEEEeCCCCCCchhHHHHHhhcccCceeeeC---ch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCC
Q 044056 17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF---FL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLE 90 (189)
Q Consensus 17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d 90 (189)
|||+++++..+.. .+.++..+++++... +. ++.+.++++|+ +++ ..++++++++++|+||||++.|+|+|
T Consensus 1 m~ili~~~~~~~~----~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 76 (526)
T PRK13581 1 MKVLVSDPISPAG----LEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD 76 (526)
T ss_pred CeEEEeCCCCHHH----HHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence 5788888764332 344544334454432 23 67788999999 554 35899999999999999999999999
Q ss_pred cCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C----CCCCCCCCCEEEEEcCCHHHH
Q 044056 91 GVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V----PTGETLLGKTVFISGFGNIGV 156 (189)
Q Consensus 91 ~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~----~~~~~l~gktvGIvG~G~IG~ 156 (189)
|+|+++++++||.|+|+||+ ++.+||||+++++|+++|+++ . ..+.+|.||||||||+|+||+
T Consensus 77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~ 153 (526)
T PRK13581 77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS 153 (526)
T ss_pred cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence 99999999999999999998 899999999999999999997 1 245789999999999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCC
Q 044056 157 ELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 157 ~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+|++|++|||+|++|||+..
T Consensus 154 ~vA~~l~~fG~~V~~~d~~~~ 174 (526)
T PRK13581 154 EVAKRAKAFGMKVIAYDPYIS 174 (526)
T ss_pred HHHHHHHhCCCEEEEECCCCC
Confidence 999999999999999999754
No 12
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.98 E-value=1.4e-31 Score=228.95 Aligned_cols=148 Identities=21% Similarity=0.233 Sum_probs=124.6
Q ss_pred ceEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCCcCCh
Q 044056 17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLEGVDI 94 (189)
Q Consensus 17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~ 94 (189)
|||++.+..+ . ..++++.+.++...+......+.++++|+ +++ .+++++++++ .|+||||+++++|+||||.
T Consensus 1 mkIl~d~~~~-~----~~~~~~~~~ev~~~~~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~ 74 (378)
T PRK15438 1 MKILVDENMP-Y----ARELFSRLGEVKAVPGRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDE 74 (378)
T ss_pred CEEEEeCCcc-h----HHHHHhhcCcEEEeCCCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCH
Confidence 6899887653 2 34566665555544322223456789999 554 4689999986 6999999999999999999
Q ss_pred hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056 95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r 174 (189)
+++.++||.|+|+||+ |+.+||||+++++|++.|+ .+.+|.||||||||+|+||+++|++|++|||+|++|||
T Consensus 75 ~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~----~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp 147 (378)
T PRK15438 75 AWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAER----DGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDP 147 (378)
T ss_pred HHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhcc----CCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECC
Confidence 9999999999999999 9999999999999999997 46799999999999999999999999999999999998
Q ss_pred CCC
Q 044056 175 SWA 177 (189)
Q Consensus 175 ~~~ 177 (189)
+..
T Consensus 148 ~~~ 150 (378)
T PRK15438 148 PRA 150 (378)
T ss_pred ccc
Confidence 654
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.97 E-value=2e-31 Score=237.61 Aligned_cols=153 Identities=26% Similarity=0.361 Sum_probs=126.4
Q ss_pred eEEEeCCCCCCchhHHHHHhhcc-cCceeee-Cch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCCcC
Q 044056 18 LVLFRGPHFPASHNYAKGYLQNY-LSIKGLC-FFL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLEGV 92 (189)
Q Consensus 18 ~ilv~~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d~i 92 (189)
||+++++..+.. .+.++.. .++.+.. .+. ++.+.++++|+ +++ ..++++++++++|+||||++.|+|+||+
T Consensus 1 ~vli~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 76 (525)
T TIGR01327 1 KVLIADPISPDG----IDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNI 76 (525)
T ss_pred CEEEeCCCCHHH----HHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchh
Confidence 477777654332 2334332 2333222 123 67788999999 554 3589999999999999999999999999
Q ss_pred ChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCCHHHHHH
Q 044056 93 DIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGNIGVEL 158 (189)
Q Consensus 93 d~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G~IG~~v 158 (189)
|+++++++||.|+|+||+ ++.+||||++++||+++|+++ ...+.+|+||||||||+|+||+++
T Consensus 77 d~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~v 153 (525)
T TIGR01327 77 DIEAATARGILVVNAPTG---NTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIV 153 (525)
T ss_pred cHHHHHHCCCEEEeCCCc---ChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHH
Confidence 999999999999999998 899999999999999999998 124678999999999999999999
Q ss_pred HHHHccCCCEEEEEcCCCC
Q 044056 159 AKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 159 A~~l~afG~~V~~~~r~~~ 177 (189)
|++|++|||+|++|||+..
T Consensus 154 A~~l~~fG~~V~~~d~~~~ 172 (525)
T TIGR01327 154 AKRAKAFGMKVLAYDPYIS 172 (525)
T ss_pred HHHHHhCCCEEEEECCCCC
Confidence 9999999999999999743
No 14
>PLN03139 formate dehydrogenase; Provisional
Probab=99.97 E-value=2.6e-31 Score=228.01 Aligned_cols=124 Identities=25% Similarity=0.340 Sum_probs=113.3
Q ss_pred hHHhhcCCCeE-EecC---CCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHH
Q 044056 51 SMHSLYASYGT-SEQM---IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLM 126 (189)
Q Consensus 51 ~~~~~~~~adv-i~~~---~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~li 126 (189)
++.+.++++|+ |... .++++++++++|+||||++.|+|+||||++++.++||.|+|++|+ ++.+||||++++|
T Consensus 90 ~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~li 166 (386)
T PLN03139 90 ELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMRI 166 (386)
T ss_pred HHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHHH
Confidence 56788999999 5432 369999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHhcCC----------C------CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 127 LGLLRKHI----------V------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 127 L~~~R~~~----------~------~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
|++.|++. . ..+.+|.||||||||+|+||+++|++|++|||+|++|||+..
T Consensus 167 L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~ 233 (386)
T PLN03139 167 LILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKM 233 (386)
T ss_pred HHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 99999997 1 135789999999999999999999999999999999999853
No 15
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.97 E-value=8.1e-31 Score=224.78 Aligned_cols=148 Identities=16% Similarity=0.206 Sum_probs=125.3
Q ss_pred ceEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCCcCCh
Q 044056 17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLEGVDI 94 (189)
Q Consensus 17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~ 94 (189)
|||++.+..+ . ..++++.+.++..........+.++++|+ +++ .+++++++++ .|+||||++.++|+||||.
T Consensus 1 mkI~~d~~~p-~----~~~~~~~~~~v~~~~~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~ 74 (381)
T PRK00257 1 MKIVADENIP-L----LDAFFAGFGEIRRLPGRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLDL 74 (381)
T ss_pred CEEEEecCch-h----HHHHHhhCCcEEEcCCcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccCH
Confidence 7899988873 2 34566665555443322223567899999 554 4689999998 5899999999999999999
Q ss_pred hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056 95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r 174 (189)
+++.++||.|+|+||+ ++.+||||+++++|++.|+ .+.+|.||||||||+|+||+.+|+++++|||+|++|||
T Consensus 75 ~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp 147 (381)
T PRK00257 75 DYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDP 147 (381)
T ss_pred HHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----cCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 9999999999999999 9999999999999999997 56899999999999999999999999999999999998
Q ss_pred CCC
Q 044056 175 SWA 177 (189)
Q Consensus 175 ~~~ 177 (189)
+..
T Consensus 148 ~~~ 150 (381)
T PRK00257 148 PRQ 150 (381)
T ss_pred ccc
Confidence 654
No 16
>PRK07574 formate dehydrogenase; Provisional
Probab=99.97 E-value=4.8e-31 Score=226.43 Aligned_cols=124 Identities=28% Similarity=0.381 Sum_probs=113.7
Q ss_pred hHHhhcCCCeE-Eec---CCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHH
Q 044056 51 SMHSLYASYGT-SEQ---MIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLM 126 (189)
Q Consensus 51 ~~~~~~~~adv-i~~---~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~li 126 (189)
++.+.++++|+ +.. ..++++++++++|+||||++.|+|+||+|++++.++||.|+|++|+ ++++||||+++++
T Consensus 83 ~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l~ 159 (385)
T PRK07574 83 DFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMMI 159 (385)
T ss_pred HHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHHH
Confidence 56788999999 543 3569999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHhcCC----------C------CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 127 LGLLRKHI----------V------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 127 L~~~R~~~----------~------~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
|++.|++. . ..+.+|.||||||||+|+||+++|++|++|||+|++|||+..
T Consensus 160 L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~ 226 (385)
T PRK07574 160 LALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRL 226 (385)
T ss_pred HHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 99999997 1 235789999999999999999999999999999999999863
No 17
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=99.97 E-value=5.1e-31 Score=217.77 Aligned_cols=156 Identities=24% Similarity=0.254 Sum_probs=134.8
Q ss_pred ceEEEeCCCCCCchhHHHHHhhccc-CceeeeCc-h-hHHhhcCCCeE--EecCCCCCHHHHhc-CCCCeEEEEcCCCCC
Q 044056 17 TLVLFRGPHFPASHNYAKGYLQNYL-SIKGLCFF-L-SMHSLYASYGT--SEQMIASDSNVITR-ANPMNLIIRFRVGLE 90 (189)
Q Consensus 17 ~~ilv~~~~~~~~~~~~~~~l~~~~-~~~~~~~~-~-~~~~~~~~adv--i~~~~~~~~~~l~~-~p~Lk~I~~~~aG~d 90 (189)
-+||+.++..+.. .+.+++.. ++++.... . ++.+.++++|+ +...+++++++|+. ..+||+|.+.++|+|
T Consensus 7 ~~il~~e~~~~~~----~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~d 82 (406)
T KOG0068|consen 7 RKILVAESLDQAC----IEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVD 82 (406)
T ss_pred ceEEEecccchHH----HHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCcc
Confidence 3799999986654 34555433 44444432 2 78889999999 45679999999994 569999999999999
Q ss_pred cCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCCHHHH
Q 044056 91 GVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGNIGV 156 (189)
Q Consensus 91 ~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G~IG~ 156 (189)
++|++++.++||.|.|+|.+ |..++|||++++++++.|+++ .+.+.+|.|||+||+|||+||+
T Consensus 83 NVDL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGs 159 (406)
T KOG0068|consen 83 NVDLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGS 159 (406)
T ss_pred ccChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchH
Confidence 99999999999999999999 889999999999999999998 4678999999999999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCc
Q 044056 157 ELAKRLRPFGVKIIAAKRSWASH 179 (189)
Q Consensus 157 ~vA~~l~afG~~V~~~~r~~~~~ 179 (189)
++|+++++|||+|++||+....+
T Consensus 160 eVA~r~k~~gm~vI~~dpi~~~~ 182 (406)
T KOG0068|consen 160 EVAVRAKAMGMHVIGYDPITPMA 182 (406)
T ss_pred HHHHHHHhcCceEEeecCCCchH
Confidence 99999999999999999986554
No 18
>PLN02306 hydroxypyruvate reductase
Probab=99.97 E-value=1.1e-30 Score=224.51 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=127.4
Q ss_pred CCcceEEEeCCCCCCchhHHHHHhhcc-cCceeee-----Cch-hHHhhc-CCCeE-Eec-CCCCCHHHHhcCCC--CeE
Q 044056 14 KSITLVLFRGPHFPASHNYAKGYLQNY-LSIKGLC-----FFL-SMHSLY-ASYGT-SEQ-MIASDSNVITRANP--MNL 81 (189)
Q Consensus 14 ~~~~~ilv~~~~~~~~~~~~~~~l~~~-~~~~~~~-----~~~-~~~~~~-~~adv-i~~-~~~~~~~~l~~~p~--Lk~ 81 (189)
..+++|+++.+..+.. ..+.|+.. .++++.. .+. ++.+.+ .++|+ +.. ..++++++++++|+ |||
T Consensus 13 ~~~~~v~~~~~~~~~~---~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~ 89 (386)
T PLN02306 13 NGKYRVVSTKPMPGTR---WINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKA 89 (386)
T ss_pred CCCceEEEeCCCCcHH---HHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceE
Confidence 3478999988764321 12344332 2333211 123 566776 57998 554 46799999999995 699
Q ss_pred EEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C-------CCCCCCCCC
Q 044056 82 IIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V-------PTGETLLGK 144 (189)
Q Consensus 82 I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~-------~~~~~l~gk 144 (189)
|++.++|+||||+++++++||.|+|+||+ ++++||||+++++|++.|+++ . ..+.+|.||
T Consensus 90 I~~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gk 166 (386)
T PLN02306 90 FSNMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQ 166 (386)
T ss_pred EEECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCC
Confidence 99999999999999999999999999998 899999999999999999996 1 125689999
Q ss_pred EEEEEcCCHHHHHHHHHHc-cCCCEEEEEcCCCCC
Q 044056 145 TVFISGFGNIGVELAKRLR-PFGVKIIAAKRSWAS 178 (189)
Q Consensus 145 tvGIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~~ 178 (189)
||||||+|+||+++|++++ +|||+|++|||+.++
T Consensus 167 tvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~ 201 (386)
T PLN02306 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQST 201 (386)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCch
Confidence 9999999999999999985 999999999998753
No 19
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.97 E-value=1.9e-30 Score=219.70 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=126.3
Q ss_pred ceEEEeCCCCCCchhHHHHHhhcccCceeeeC---ch-hHHhhcCCCeE-Ee-cCCCCCHHHHhcCCC--CeEEEEcCCC
Q 044056 17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF---FL-SMHSLYASYGT-SE-QMIASDSNVITRANP--MNLIIRFRVG 88 (189)
Q Consensus 17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~adv-i~-~~~~~~~~~l~~~p~--Lk~I~~~~aG 88 (189)
++++++.+ ....++..+++.+ ++++... .. +..+.++++|+ ++ ...++++++++.+|+ ||||++.|+|
T Consensus 4 ~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G 79 (332)
T PRK08605 4 IKIMSVRD---EDAPYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAG 79 (332)
T ss_pred EEEEecCH---HHHHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccc
Confidence 45555554 2233445555543 4544322 12 56678899998 54 457899999999996 9999999999
Q ss_pred CCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------C-------CCCCCCCCCEEEEEcCCH
Q 044056 89 LEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------V-------PTGETLLGKTVFISGFGN 153 (189)
Q Consensus 89 ~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------~-------~~~~~l~gktvGIvG~G~ 153 (189)
+|++|+++++++||.|+|+||+ ++++||||+++++|++.|++. . ..+++|+|+||||||+|+
T Consensus 80 ~d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~ 156 (332)
T PRK08605 80 FDTYDLELATKYNLIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGR 156 (332)
T ss_pred cchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCH
Confidence 9999999999999999999999 889999999999999999997 1 135689999999999999
Q ss_pred HHHHHHHHH-ccCCCEEEEEcCCCCC
Q 044056 154 IGVELAKRL-RPFGVKIIAAKRSWAS 178 (189)
Q Consensus 154 IG~~vA~~l-~afG~~V~~~~r~~~~ 178 (189)
||+++|++| ++|||+|++||++..+
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~ 182 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNA 182 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccH
Confidence 999999999 8999999999998643
No 20
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.95 E-value=1.3e-27 Score=200.64 Aligned_cols=155 Identities=13% Similarity=0.153 Sum_probs=119.2
Q ss_pred ceEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChh
Q 044056 17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGVDID 95 (189)
Q Consensus 17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~ 95 (189)
|.|++..+.. +...|...+.+..|++++..+.. ...+++|+ +.+. .+.++++ .|+||||++.|+|+|++|..
T Consensus 1 ~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~---~~~~~a~~~~~~~--~~~~~l~-~~~Lk~I~~~~aG~d~i~~~ 73 (312)
T PRK15469 1 MDIIFYHPTF-DTQWWIEALRKALPQARVRAWKS---GDNDPADYALVWH--PPVEMLA-GRDLKAVFALGAGVDSILSK 73 (312)
T ss_pred CEEEEeCCcc-CHHHHHHHHHHHCCCCeEEecCC---CCCccCeEEEEeC--CChHHhc-cCCceEEEEcccccchhhhh
Confidence 4677777662 22334444334567777764442 12478888 6654 3567776 58999999999999999832
Q ss_pred H-----HhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC------------CCCCCCCCCCEEEEEcCCHHHHHH
Q 044056 96 A-----LTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI------------VPTGETLLGKTVFISGFGNIGVEL 158 (189)
Q Consensus 96 ~-----~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~------------~~~~~~l~gktvGIvG~G~IG~~v 158 (189)
. +.++||+|+|+++. +++.+||||+++++|++.|+++ .....++.||||||||+|+||+++
T Consensus 74 ~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~v 151 (312)
T PRK15469 74 LQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKV 151 (312)
T ss_pred hccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHH
Confidence 2 44689999999764 2789999999999999999997 123568999999999999999999
Q ss_pred HHHHccCCCEEEEEcCCCCCcc
Q 044056 159 AKRLRPFGVKIIAAKRSWASHS 180 (189)
Q Consensus 159 A~~l~afG~~V~~~~r~~~~~~ 180 (189)
|++|++|||+|++||++.+..+
T Consensus 152 A~~l~afG~~V~~~~~~~~~~~ 173 (312)
T PRK15469 152 AQSLQTWGFPLRCWSRSRKSWP 173 (312)
T ss_pred HHHHHHCCCEEEEEeCCCCCCC
Confidence 9999999999999999876543
No 21
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.95 E-value=1.3e-27 Score=199.79 Aligned_cols=113 Identities=21% Similarity=0.337 Sum_probs=97.5
Q ss_pred cCCCeEE-ecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC
Q 044056 56 YASYGTS-EQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI 134 (189)
Q Consensus 56 ~~~advi-~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~ 134 (189)
..++|++ +... +..+|+||||++.++|+||+|++++.++++.++|. |. ++.+||||+++++|++.|+++
T Consensus 32 ~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~ 101 (303)
T PRK06436 32 YYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNIC 101 (303)
T ss_pred cCCCCEEEecCC------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChH
Confidence 4678884 4322 23468999999999999999999999988887775 66 889999999999999999997
Q ss_pred ------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 135 ------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 135 ------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
.....+|+||||||||+|+||+++|+++++|||+|++|||+..+
T Consensus 102 ~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 157 (303)
T PRK06436 102 ENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN 157 (303)
T ss_pred HHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 23457999999999999999999999999999999999998654
No 22
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.94 E-value=1.5e-26 Score=193.77 Aligned_cols=123 Identities=33% Similarity=0.444 Sum_probs=106.5
Q ss_pred HhhcCCCeE-Ee--cCCCCCHHHHhcC-CCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHH
Q 044056 53 HSLYASYGT-SE--QMIASDSNVITRA-NPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128 (189)
Q Consensus 53 ~~~~~~adv-i~--~~~~~~~~~l~~~-p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~ 128 (189)
.+.+.+... +. .....+.+.+... |+||+|.++|+|+||||+++|++|||+|+|+|+. +.++|||++++++|.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil~ 131 (336)
T KOG0069|consen 55 LKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLLA 131 (336)
T ss_pred hhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHHH
Confidence 344455544 33 2345667776665 8999999999999999999999999999999999 789999999999999
Q ss_pred HHhcCC----------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 129 LLRKHI----------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 129 ~~R~~~----------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
+.|++. .+.+..+.||||||+|+|+||+++|+||++|||.+.|++|+...
T Consensus 132 ~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~ 197 (336)
T KOG0069|consen 132 LLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLP 197 (336)
T ss_pred HHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCc
Confidence 999998 34568999999999999999999999999999999999997664
No 23
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.78 E-value=5.6e-19 Score=131.01 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=76.1
Q ss_pred EEEeCCCCCCchhHHHHHhhc-ccCceeeeCch--hHHhhcCCCeE-EecCCC-CCHHHHhcCCCCeEEEEcCCCCCcCC
Q 044056 19 VLFRGPHFPASHNYAKGYLQN-YLSIKGLCFFL--SMHSLYASYGT-SEQMIA-SDSNVITRANPMNLIIRFRVGLEGVD 93 (189)
Q Consensus 19 ilv~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~--~~~~~~~~adv-i~~~~~-~~~~~l~~~p~Lk~I~~~~aG~d~id 93 (189)
||++++..+.. .+.|++ + ++++..... ++.+.++++|+ +.+..+ +++++++.+|+||||++.|+|+|+||
T Consensus 1 ili~~~~~~~~----~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 75 (133)
T PF00389_consen 1 ILITDPLPDEE----IERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID 75 (133)
T ss_dssp EEESSS-SHHH----HHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-
T ss_pred eEEeccCCHHH----HHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc
Confidence 67888775443 455555 4 566555322 67889999999 665554 99999999999999999999999999
Q ss_pred hhHHhhCCeEEEecCCCCCCCchhHHHHH
Q 044056 94 IDALTNCAIKAARILGDVSGNAASCAELS 122 (189)
Q Consensus 94 ~~~~~~~gI~v~n~~g~~~~~a~~vAE~~ 122 (189)
+++++++||.|+|+||+ ++++||||+
T Consensus 76 ~~~a~~~gI~V~n~~g~---~~~aVAE~a 101 (133)
T PF00389_consen 76 LEAAKERGIPVTNVPGY---NAEAVAEHA 101 (133)
T ss_dssp HHHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred HHHHhhCeEEEEEeCCc---CCcchhccc
Confidence 99999999999999999 899999998
No 24
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.63 E-value=2.2e-15 Score=125.48 Aligned_cols=98 Identities=20% Similarity=0.336 Sum_probs=86.7
Q ss_pred CCHHHHhcCCCCeEEEEcCCCCCcCChh-HHhhCCeEEE------ecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 044056 68 SDSNVITRANPMNLIIRFRVGLEGVDID-ALTNCAIKAA------RILGDVSGNAASCAELSIYLMLGLLRKHIVPTGET 140 (189)
Q Consensus 68 ~~~~~l~~~p~Lk~I~~~~aG~d~id~~-~~~~~gI~v~------n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~ 140 (189)
+++++++.+| .++...+|+++.|++ .++++||+|+ |++.+ ++.++||+++.+++.. ...+
T Consensus 82 l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~---n~~~~Ae~ai~~al~~-------~~~~ 148 (287)
T TIGR02853 82 LTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIY---NSIPTAEGAIMMAIEH-------TDFT 148 (287)
T ss_pred ccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEE---ccHhHHHHHHHHHHHh-------cCCC
Confidence 5688888887 367788899999888 9999999999 88888 8899999999988863 3458
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
+.|++++|+|+|+||+.+|++|++||++|.+++|+..+
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~ 186 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSAD 186 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999998643
No 25
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.55 E-value=2.5e-15 Score=116.85 Aligned_cols=58 Identities=45% Similarity=0.651 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCC---------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056 123 IYLMLGLLRKHI---------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS 180 (189)
Q Consensus 123 l~liL~~~R~~~---------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~ 180 (189)
++++|++.|+++ ...+++++|+||||||+|+||+++|+++++|||+|++|||+.++.+
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence 589999999998 4567899999999999999999999999999999999999987644
No 26
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.55 E-value=5.5e-15 Score=124.15 Aligned_cols=125 Identities=21% Similarity=0.329 Sum_probs=107.9
Q ss_pred hHHh-hcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHH
Q 044056 51 SMHS-LYASYGT-SE-QMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLML 127 (189)
Q Consensus 51 ~~~~-~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL 127 (189)
++.+ .+.++-. .. -+..++++.+++++.||++...+.|+|++|+.++.+.||.|||.|+. .-+.+|+-++.++|
T Consensus 65 eIhekvLneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl 141 (435)
T KOG0067|consen 65 EIHEKVLNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHIL 141 (435)
T ss_pred HHHHHHHHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHH
Confidence 5543 3455544 33 34678999999999999999999999999999999999999999998 55999999999999
Q ss_pred HHHhcCC---------------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 128 GLLRKHI---------------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 128 ~~~R~~~---------------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
.++|+-. ......+.|.++|++|+|++|++|+.++++||+.|+.||++..+
T Consensus 142 ~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~ 213 (435)
T KOG0067|consen 142 NLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLID 213 (435)
T ss_pred hhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhh
Confidence 9999988 22345788999999999999999999999999999999998654
No 27
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.34 E-value=2.4e-12 Score=112.98 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=75.7
Q ss_pred EcCCCCCcCC-hhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 044056 84 RFRVGLEGVD-IDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRL 162 (189)
Q Consensus 84 ~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l 162 (189)
-+++|+..+- +......+|+|+|+|++ +..+++|+++++++++...+.......+.||||||+|+|.||+.+|++|
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL 273 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQAL 273 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHH
Confidence 4667776652 22223368999999999 7899999999999998876665556799999999999999999999999
Q ss_pred ccCCCEEEEEcCCCC
Q 044056 163 RPFGVKIIAAKRSWA 177 (189)
Q Consensus 163 ~afG~~V~~~~r~~~ 177 (189)
++|||+|+++++.+.
T Consensus 274 ~a~Ga~ViV~e~dp~ 288 (476)
T PTZ00075 274 RGFGARVVVTEIDPI 288 (476)
T ss_pred HHCCCEEEEEeCCch
Confidence 999999999977643
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.33 E-value=2.7e-11 Score=101.36 Aligned_cols=100 Identities=20% Similarity=0.299 Sum_probs=82.6
Q ss_pred CHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCC----CCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 044056 69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGD----VSGNAASCAELSIYLMLGLLRKHIVPTGETLLGK 144 (189)
Q Consensus 69 ~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~----~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gk 144 (189)
+.+.++.+|++..+. .|.+.++++ +.+.++||.+.+.... . -++.++||.++...+. ....++.++
T Consensus 84 ~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~-~ns~~~aegav~~a~~-------~~~~~l~g~ 153 (296)
T PRK08306 84 TEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI-LNSIPTAEGAIMMAIE-------HTPITIHGS 153 (296)
T ss_pred hHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh-hccHhHHHHHHHHHHH-------hCCCCCCCC
Confidence 678999999997554 589999988 7889999999987642 0 1678899998776553 134578899
Q ss_pred EEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 145 TVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 145 tvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
+++|+|+|.+|+.+++.|+++|++|.+++|++..
T Consensus 154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~ 187 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLKALGANVTVGARKSAH 187 (296)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 9999999999999999999999999999998643
No 29
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.59 E-value=3.8e-08 Score=82.85 Aligned_cols=40 Identities=38% Similarity=0.524 Sum_probs=36.3
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
...|+||||||||+|+||+++|++|++|||+|++|++..+
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~ 50 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGK 50 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcch
Confidence 4679999999999999999999999999999999987543
No 30
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.42 E-value=3.2e-07 Score=80.29 Aligned_cols=89 Identities=20% Similarity=0.277 Sum_probs=62.8
Q ss_pred EEcCCCCCcCC-hhHHhhCCeEEEecCCCCCC----CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHH
Q 044056 83 IRFRVGLEGVD-IDALTNCAIKAARILGDVSG----NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVE 157 (189)
Q Consensus 83 ~~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~----~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~ 157 (189)
=-++.|+..+- .....+.++||.|+++..+. |...+++.++-.+.. .....+.|++|+|+|+|.||+.
T Consensus 154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r-------at~~~l~Gk~VlViG~G~IG~~ 226 (425)
T PRK05476 154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKR-------ATNVLIAGKVVVVAGYGDVGKG 226 (425)
T ss_pred ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHHH-------hccCCCCCCEEEEECCCHHHHH
Confidence 34566766652 22223568999999987332 223355555543332 1234589999999999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCC
Q 044056 158 LAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 158 vA~~l~afG~~V~~~~r~~~~ 178 (189)
+|++|++||++|+++|+.+..
T Consensus 227 vA~~lr~~Ga~ViV~d~dp~r 247 (425)
T PRK05476 227 CAQRLRGLGARVIVTEVDPIC 247 (425)
T ss_pred HHHHHHhCCCEEEEEcCCchh
Confidence 999999999999999987644
No 31
>PLN02494 adenosylhomocysteinase
Probab=98.28 E-value=1.1e-06 Score=77.54 Aligned_cols=41 Identities=24% Similarity=0.469 Sum_probs=37.2
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
....+.||+|+|+|+|.||+.+|+++++|||+|+++++.+.
T Consensus 248 t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 248 TDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred cCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 34568999999999999999999999999999999988764
No 32
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.24 E-value=4.2e-06 Score=66.30 Aligned_cols=59 Identities=29% Similarity=0.302 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 117 SCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 117 ~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+++.=++..+-..+++. ..+.+++||+++|+|+|++|+.+|++|..+|++|+++|++..
T Consensus 4 aTg~Gv~~~~~~~~~~~--~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~ 62 (200)
T cd01075 4 PTAYGVFLGMKAAAEHL--LGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEE 62 (200)
T ss_pred hhHHHHHHHHHHHHHHh--cCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 34444555555555542 136789999999999999999999999999999999998754
No 33
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.11 E-value=6.7e-06 Score=71.65 Aligned_cols=90 Identities=21% Similarity=0.234 Sum_probs=59.8
Q ss_pred EEEEcCCCCCcCC-hhHHhhCCeEEEecCCCCCC----CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHH
Q 044056 81 LIIRFRVGLEGVD-IDALTNCAIKAARILGDVSG----NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIG 155 (189)
Q Consensus 81 ~I~~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~----~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG 155 (189)
.+=-++.|+..+- .....+..+|+.++.+..+. |...+.+.++-.++. .....+.|++|+|+|+|.||
T Consensus 135 ~~EeTttGv~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~r-------~t~~~l~Gk~VvViG~G~IG 207 (406)
T TIGR00936 135 GSEETTTGVIRLRAMEAEGVLKFPAINVNDAYTKSLFDNRYGTGQSTIDGILR-------ATNLLIAGKTVVVAGYGWCG 207 (406)
T ss_pred EeecchHHHHHHHHHHHcCCCCCcEEEecchhhchhhhcccccchhHHHHHHH-------hcCCCCCcCEEEEECCCHHH
Confidence 3345566666541 11122345777776665221 223455555544333 23346899999999999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCC
Q 044056 156 VELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 156 ~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+.+|+++++||++|+++++.+.
T Consensus 208 ~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 208 KGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred HHHHHHHhhCcCEEEEEeCChh
Confidence 9999999999999999987653
No 34
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.94 E-value=9.4e-06 Score=62.06 Aligned_cols=40 Identities=30% Similarity=0.553 Sum_probs=30.6
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
....+.||++.|+|||.+|+.+|+.|+++|++|+.++..|
T Consensus 17 t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 17 TNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp H-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 3467899999999999999999999999999999998754
No 35
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.89 E-value=1.3e-05 Score=68.15 Aligned_cols=39 Identities=33% Similarity=0.431 Sum_probs=35.3
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...|.+++|||||+|++|+++|+.|+.+|++|+++++..
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~ 50 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREG 50 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCc
Confidence 457899999999999999999999999999999887653
No 36
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.89 E-value=2.7e-05 Score=68.05 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=59.9
Q ss_pred EEEcCCCCCcCC-hhHHhhCCeEEEecCCCCCC----CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHH
Q 044056 82 IIRFRVGLEGVD-IDALTNCAIKAARILGDVSG----NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGV 156 (189)
Q Consensus 82 I~~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~----~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~ 156 (189)
+=-++.|+..+- ++...+..+||.++.+..+. |...+.|.++-.++. .....+.|++|+|+|+|.||+
T Consensus 143 ~EeTttGv~rl~~~~~~~~l~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r-------~t~~~l~GktVvViG~G~IG~ 215 (413)
T cd00401 143 SEETTTGVHRLYKMEKEGKLKFPAINVNDSVTKSKFDNLYGCRESLIDGIKR-------ATDVMIAGKVAVVAGYGDVGK 215 (413)
T ss_pred eecchHHHHHHHHHHHCCCCCCCEEEecchhhcccccccchhchhhHHHHHH-------hcCCCCCCCEEEEECCCHHHH
Confidence 334566665542 11122245777776665221 333456655544433 245578999999999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCC
Q 044056 157 ELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 157 ~vA~~l~afG~~V~~~~r~~~~ 178 (189)
.+|++++++|++|+++++.+..
T Consensus 216 ~va~~ak~~Ga~ViV~d~d~~R 237 (413)
T cd00401 216 GCAQSLRGQGARVIVTEVDPIC 237 (413)
T ss_pred HHHHHHHHCCCEEEEEECChhh
Confidence 9999999999999999887543
No 37
>PLN02712 arogenate dehydrogenase
Probab=97.64 E-value=6.4e-05 Score=69.52 Aligned_cols=41 Identities=32% Similarity=0.290 Sum_probs=37.9
Q ss_pred CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..+.++.+++|||||+|.||+.+|+.++.+|++|.+|||+.
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~ 402 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSD 402 (667)
T ss_pred hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECCh
Confidence 35678899999999999999999999999999999999974
No 38
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.46 E-value=0.00047 Score=55.67 Aligned_cols=56 Identities=34% Similarity=0.470 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
.+++-=++..+-..+++ ...++.+++|.|.|+|++|+.+|++|..+|++|+++..+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~----~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 8 EATGRGVAYATREALKK----LGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred ccchHHHHHHHHHHHHh----cCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 44555555566666664 237899999999999999999999999999999966543
No 39
>PLN02256 arogenate dehydrogenase
Probab=97.38 E-value=0.00024 Score=59.76 Aligned_cols=37 Identities=35% Similarity=0.374 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
+-.+++|||||+|.||+.+|+.++.+|.+|++|+++.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 3467899999999999999999999999999999885
No 40
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.37 E-value=0.0034 Score=54.28 Aligned_cols=119 Identities=15% Similarity=0.032 Sum_probs=67.9
Q ss_pred CCeEEecCCCCCHHHHhcC-CCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCC------CCCCchhHHHHHHHHH----
Q 044056 58 SYGTSEQMIASDSNVITRA-NPMNLIIRFRVGLEGVDIDALTNCAIKAARILGD------VSGNAASCAELSIYLM---- 126 (189)
Q Consensus 58 ~advi~~~~~~~~~~l~~~-p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~------~~~~a~~vAE~~l~li---- 126 (189)
.+|+|..-.++..+-++.+ ++--++..+....+..-.+.+.++++........ .. .=.++|+.+=.+.
T Consensus 66 ~~dii~~Vk~p~~~~~~~~~~g~~l~~~~~~a~~~~~~~~l~~~~~t~i~~e~i~~~~~~~~-~l~~~~~iaG~~av~~a 144 (370)
T TIGR00518 66 DAELVLKVKEPLPEEYGYLRHGQILFTYLHLAAERALTDALLDSGTTAIAYETVQTADGALP-LLAPMSEVAGRLAAQVG 144 (370)
T ss_pred cCCEEEEeCCCCHHHHhhcCCCcEEEEEeccCCCHHHHHHHHHcCCeEEEeeeeeccCCCCc-cccchhHHHHHHHHHHH
Confidence 3788543333444444544 4444555555544555567777777655432111 00 0012333222211
Q ss_pred -HHHHhcCC-----CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 127 -LGLLRKHI-----VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 127 -L~~~R~~~-----~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
-.+.|.++ ......+.+++|.|+|+|.+|+.+++.|+++|++|.++|++..
T Consensus 145 a~~~~~~~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~ 201 (370)
T TIGR00518 145 AYHLEKTQGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINID 201 (370)
T ss_pred HHHhHhhcCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 12223222 1112246788999999999999999999999999999998753
No 41
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.30 E-value=0.00094 Score=54.83 Aligned_cols=55 Identities=31% Similarity=0.460 Sum_probs=46.7
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056 115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~ 173 (189)
.++++-=++..+..++++ ...++.|+||.|-|||++|+.+|+.|..+|++|++.+
T Consensus 14 ~~aTg~Gv~~~~~~~~~~----~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVs 68 (254)
T cd05313 14 PEATGYGLVYFVEEMLKD----RNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLS 68 (254)
T ss_pred CchhHHHHHHHHHHHHHh----cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 466777777777777775 3688999999999999999999999999999999554
No 42
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.20 E-value=0.0011 Score=53.22 Aligned_cols=36 Identities=44% Similarity=0.695 Sum_probs=32.5
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~ 173 (189)
..++.|++|.|.|||++|+.+|+.|...|.+|++..
T Consensus 18 ~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vs 53 (217)
T cd05211 18 GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVS 53 (217)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 368999999999999999999999999999877654
No 43
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.19 E-value=0.00087 Score=45.66 Aligned_cols=38 Identities=39% Similarity=0.589 Sum_probs=34.1
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccC-CCEEEEEcC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPF-GVKIIAAKR 174 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~af-G~~V~~~~r 174 (189)
....+.+++++|+|.|.+|+.+++.+..+ +.+|..|||
T Consensus 17 ~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 17 TNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34678999999999999999999999988 678999988
No 44
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.14 E-value=0.00036 Score=58.73 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
.|+.+||+|+|.+|.--.+.++||||+|.+.|++.++
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~k 217 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKK 217 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchh
Confidence 7999999999999999999999999999999998644
No 45
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.13 E-value=0.0015 Score=57.72 Aligned_cols=56 Identities=21% Similarity=0.469 Sum_probs=47.5
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEE-c
Q 044056 114 NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA-K 173 (189)
Q Consensus 114 ~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~-~ 173 (189)
-.++++--++..+...+++ .+.++.|+||.|.|||++|+.+|+.|..+|++|++. |
T Consensus 207 r~~aTg~Gv~~~~~~~~~~----~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 207 RTEATGYGLVYFAEEMLKA----RGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred CCCcccHHHHHHHHHHHHh----cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 3456777777777777775 367899999999999999999999999999999998 5
No 46
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.05 E-value=0.00087 Score=49.63 Aligned_cols=40 Identities=30% Similarity=0.415 Sum_probs=36.6
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWAS 178 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~ 178 (189)
.+++++++.|+|.|.+|++++..|...|++ |..++|+..+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~r 48 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPER 48 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 478999999999999999999999999998 9999998543
No 47
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.05 E-value=0.00069 Score=46.66 Aligned_cols=34 Identities=35% Similarity=0.458 Sum_probs=30.0
Q ss_pred EEEEEcCCHHHHHHHHHHccCC---CEEE-EEcCCCCC
Q 044056 145 TVFISGFGNIGVELAKRLRPFG---VKII-AAKRSWAS 178 (189)
Q Consensus 145 tvGIvG~G~IG~~vA~~l~afG---~~V~-~~~r~~~~ 178 (189)
+|||||+|++|+++++.+..-| .+|. +++|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~ 38 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEK 38 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHH
Confidence 6999999999999999999999 8999 55887654
No 48
>PLN02712 arogenate dehydrogenase
Probab=97.00 E-value=0.0011 Score=61.35 Aligned_cols=38 Identities=37% Similarity=0.421 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..-+.++|||||+|.||+.+|+.++.+|.+|.+||++.
T Consensus 48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 85 (667)
T PLN02712 48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD 85 (667)
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34455799999999999999999999999999999873
No 49
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.92 E-value=0.0033 Score=55.51 Aligned_cols=56 Identities=25% Similarity=0.484 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056 115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r 174 (189)
.++++-=++..+...+++ .+.+|.|+||.|.|+|++|+..|+.|..+|++|++++.
T Consensus 204 ~~aTg~Gv~~~~~~~~~~----~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 204 PEATGYGNIYFLMEMLKT----KGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CcccHHHHHHHHHHHHHh----cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 456666666666666665 36689999999999999999999999999999999554
No 50
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.88 E-value=0.0032 Score=54.49 Aligned_cols=61 Identities=16% Similarity=0.011 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHhcCC---CCCCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 116 ASCAELSIYLMLGLLRKHI---VPTGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~---~~~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
....+-.+-.++..+|..- .........++|+||| +|.+|+.+|+.++.-|..|.+||+..
T Consensus 68 ~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 68 PDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 5566777777887777655 2222333568999999 99999999999999999999999854
No 51
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.85 E-value=0.00065 Score=59.89 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
....|+||||+|||||+||+ ++||+|++.++++.
T Consensus 30 ~~~~LkgKtIaIIGyGSqG~-----AqAlNLrdSGvnVv 63 (487)
T PRK05225 30 GASYLKGKKIVIVGCGAQGL-----NQGLNMRDSGLDIS 63 (487)
T ss_pred hhHHhCCCEEEEEccCHHHH-----HHhCCCccccceeE
Confidence 34689999999999999999 55555555555544
No 52
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.84 E-value=0.0021 Score=47.95 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSWAS 178 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~ 178 (189)
.++.+++++|+|+|.+|+.+++.+...| .+|..++|+...
T Consensus 15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~ 55 (155)
T cd01065 15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEK 55 (155)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence 4577899999999999999999999886 789999997543
No 53
>PLN02477 glutamate dehydrogenase
Probab=96.81 E-value=0.0037 Score=54.76 Aligned_cols=55 Identities=31% Similarity=0.495 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056 115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~ 173 (189)
.++++-=++..+-..+++ .+.+|.|+||.|.|||++|+.+|+.|...|++|++..
T Consensus 182 ~~aTg~Gv~~~~~~~~~~----~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVs 236 (410)
T PLN02477 182 EAATGRGVVFATEALLAE----HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVS 236 (410)
T ss_pred CccchHHHHHHHHHHHHH----cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 356677677777777765 4568999999999999999999999999999999653
No 54
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.80 E-value=0.0019 Score=57.23 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=34.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
-+.+++|+|+|+|..|+++|+.|+..|++|.++|+...
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 45689999999999999999999999999999998654
No 55
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.80 E-value=0.017 Score=51.92 Aligned_cols=121 Identities=11% Similarity=0.026 Sum_probs=73.3
Q ss_pred CCeEEecCCCCCHHHHhcCC-CCeEEEEcCCCCCcCChhHHhhCCeEEEe---cCC----CCCCCchhHHHHHHHHHHHH
Q 044056 58 SYGTSEQMIASDSNVITRAN-PMNLIIRFRVGLEGVDIDALTNCAIKAAR---ILG----DVSGNAASCAELSIYLMLGL 129 (189)
Q Consensus 58 ~advi~~~~~~~~~~l~~~p-~Lk~I~~~~aG~d~id~~~~~~~gI~v~n---~~g----~~~~~a~~vAE~~l~liL~~ 129 (189)
++|+|+.-.+++.+-++.++ +--+|....-..|.=.++.+.+++|.+.. .|. -...-=.++|+.+=....-.
T Consensus 65 ~~diilkV~~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~Av~~ 144 (509)
T PRK09424 65 QSDIILKVNAPSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRAVIE 144 (509)
T ss_pred cCCEEEEeCCCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHHHHH
Confidence 57884433445555567774 55666666665555456788888887754 221 00000123444433222111
Q ss_pred H-hcCC-CC-----CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 130 L-RKHI-VP-----TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 130 ~-R~~~-~~-----~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
. ..+. .. ......+.+|.|+|.|.||...++.++++|++|+++|+++..
T Consensus 145 aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~r 200 (509)
T PRK09424 145 AAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEV 200 (509)
T ss_pred HHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 1 2222 11 112456999999999999999999999999999999987644
No 56
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.80 E-value=0.0047 Score=54.55 Aligned_cols=54 Identities=30% Similarity=0.509 Sum_probs=45.3
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEE
Q 044056 114 NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171 (189)
Q Consensus 114 ~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~ 171 (189)
-.++++-=++..+...+++ .+.+|.|+||.|-|+|++|+..|+.|..+|++|++
T Consensus 203 r~~ATg~Gv~~~~~~~~~~----~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVa 256 (445)
T PRK14030 203 RPEATGFGALYFVHQMLET----KGIDIKGKTVAISGFGNVAWGAATKATELGAKVVT 256 (445)
T ss_pred CCCccHHHHHHHHHHHHHH----cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 3456676676666666665 35689999999999999999999999999999999
No 57
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.73 E-value=0.03 Score=50.45 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=73.5
Q ss_pred CCeEEecCCCCCHHHHhcC-CCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCC-------CCCCchhHHHHHHHH-HHH
Q 044056 58 SYGTSEQMIASDSNVITRA-NPMNLIIRFRVGLEGVDIDALTNCAIKAARILGD-------VSGNAASCAELSIYL-MLG 128 (189)
Q Consensus 58 ~advi~~~~~~~~~~l~~~-p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~-------~~~~a~~vAE~~l~l-iL~ 128 (189)
++|+|+.-.+++.+-++.+ ++--+|+...-.-|.=.++.+.+++|.+...--. .-.-=.++|+.+=.. ++.
T Consensus 64 ~adiIlkV~~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi~ 143 (511)
T TIGR00561 64 QSDIILKVNAPSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAIIE 143 (511)
T ss_pred cCCEEEEeCCCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHHH
Confidence 5788443344555556776 4566666666555544467888888877652211 000112455544221 111
Q ss_pred HHhcCC-C-----CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 129 LLRKHI-V-----PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 129 ~~R~~~-~-----~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
.++.+. . .....+.+.++.|+|.|.+|...++.++++|++|+++|++...
T Consensus 144 Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~r 199 (511)
T TIGR00561 144 AAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEV 199 (511)
T ss_pred HHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 112222 0 0112455789999999999999999999999999999987643
No 58
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.70 E-value=0.0023 Score=56.10 Aligned_cols=56 Identities=30% Similarity=0.371 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056 115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSWAS 178 (189)
Q Consensus 115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~ 178 (189)
+.+++..++-+... ....+.+++|+|+|+|.||+.+++.|..+| .+|..++|+...
T Consensus 160 ~vSv~~~Av~la~~--------~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~r 216 (417)
T TIGR01035 160 AVSISSAAVELAER--------IFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYER 216 (417)
T ss_pred CcCHHHHHHHHHHH--------HhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence 35566666544332 123478999999999999999999999999 689999998654
No 59
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=96.64 E-value=0.0022 Score=56.18 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=27.8
Q ss_pred CEEEEEcCCHHHHHHHHHHcc-CCCEEEE-EcCC
Q 044056 144 KTVFISGFGNIGVELAKRLRP-FGVKIIA-AKRS 175 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~a-fG~~V~~-~~r~ 175 (189)
.+|||.|||+|||.++|.+.+ ++++|++ .|+.
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~ 119 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF 119 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 489999999999999999874 8999988 5544
No 60
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.51 E-value=0.0036 Score=49.90 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHH--HccCCCEEEE-EcCCC
Q 044056 115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKR--LRPFGVKIIA-AKRSW 176 (189)
Q Consensus 115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~--l~afG~~V~~-~~r~~ 176 (189)
+...++|.+..++...|++.... ..++++|+|+|.+|+.+++. ....|+++.+ +|+.+
T Consensus 60 G~~~~gy~v~~l~~~~~~~l~~~----~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~ 120 (213)
T PRK05472 60 GKRGVGYNVEELLEFIEKILGLD----RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDP 120 (213)
T ss_pred CCCCCCeeHHHHHHHHHHHhCCC----CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECCh
Confidence 35567899999999999877222 35789999999999999986 3478999876 55543
No 61
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.45 E-value=0.006 Score=47.63 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=35.9
Q ss_pred CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+..+.++++.|+|. |.+|+.+++.+...|.+|..++|+..
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~ 63 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLE 63 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 66789999999995 99999999999989999999998753
No 62
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=96.44 E-value=0.0036 Score=52.37 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=43.0
Q ss_pred HHHHHhcCC------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056 126 MLGLLRKHI------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH 179 (189)
Q Consensus 126 iL~~~R~~~------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~ 179 (189)
+=++.|++. .......+.++||.||+|..|..++.-|-.-|.+|++|||+.++.
T Consensus 12 l~~~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~ 71 (327)
T KOG0409|consen 12 LEAFSRRLVKASETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKC 71 (327)
T ss_pred HHhhcccccccccccccccCCcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHH
Confidence 334555555 223445678999999999999999999999999999999987654
No 63
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.42 E-value=0.0066 Score=42.77 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=32.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.++|++|.|||.|.+|..=++.|...|++|..+++..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 6899999999999999999999999999999999874
No 64
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.35 E-value=0.0076 Score=46.45 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHH-HHHHHHHHccCCCEEEEEcCCCC
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNI-GVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.++++.++-++-. ...++.||++.|+|.|.+ |+.+|+.|...|++|...+|+.+
T Consensus 25 p~~~~a~v~l~~~--------~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~ 79 (168)
T cd01080 25 PCTPAGILELLKR--------YGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK 79 (168)
T ss_pred CChHHHHHHHHHH--------cCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence 4566655554333 345799999999999995 99999999999999999998754
No 65
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.34 E-value=0.0053 Score=53.96 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=35.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS 178 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 178 (189)
.+.+++|+|+|.|.||+.+++.+...|+ +|+.++|+...
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~r 218 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLER 218 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 4789999999999999999999999998 79999998543
No 66
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.32 E-value=0.0035 Score=53.44 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH 179 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~ 179 (189)
.|+.|+|+|+|..|....+.++++|++|+++|++.++.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~ 203 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL 203 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH
Confidence 39999999999999999999999999999999998754
No 67
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.32 E-value=0.0069 Score=50.21 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=36.6
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSWAS 178 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~ 178 (189)
+.++.++++.|+|.|.+|++++..|..+| .+|..++|+...
T Consensus 118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~ 159 (278)
T PRK00258 118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVER 159 (278)
T ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 34688999999999999999999999999 689999998643
No 68
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.29 E-value=0.0048 Score=52.85 Aligned_cols=40 Identities=35% Similarity=0.594 Sum_probs=35.5
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.-.-+.||++-|.|||..|+-+|.++++.|++|+++.-.|
T Consensus 203 Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDP 242 (420)
T COG0499 203 TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP 242 (420)
T ss_pred hceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCc
Confidence 4457899999999999999999999999999999986543
No 69
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.21 E-value=0.0069 Score=46.13 Aligned_cols=40 Identities=25% Similarity=0.191 Sum_probs=36.1
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...+|.|++|.|||-|++|...++.|...|++|..+++..
T Consensus 7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 4468999999999999999999999999999999997654
No 70
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.19 E-value=0.007 Score=50.85 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..++.-++-++-. .+.++.||+|+|||.| .+|+.+|.+|..-|++|..|+++.+
T Consensus 140 PcTp~aii~lL~~--------~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~ 194 (301)
T PRK14194 140 PCTPSGCLRLLED--------TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST 194 (301)
T ss_pred CCcHHHHHHHHHH--------hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC
Confidence 4445555444433 4679999999999996 9999999999999999999977654
No 71
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.17 E-value=0.016 Score=51.33 Aligned_cols=54 Identities=30% Similarity=0.511 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~ 173 (189)
++++-=++..+-..++. .+.+|.|+||.|-|+|++|+..|++|..+|++|++.+
T Consensus 214 eATG~Gv~~~~~~~l~~----~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavS 267 (454)
T PTZ00079 214 EATGYGLVYFVLEVLKK----LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMS 267 (454)
T ss_pred cccHHHHHHHHHHHHHH----cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 45555555555555554 4778999999999999999999999999999999544
No 72
>PLN02858 fructose-bisphosphate aldolase
Probab=96.16 E-value=0.005 Score=61.41 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
..++||+||+|.+|..+|+.|...|++|.+|||++..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~ 359 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPT 359 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 3489999999999999999999999999999998654
No 73
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.11 E-value=0.0073 Score=50.92 Aligned_cols=38 Identities=37% Similarity=0.561 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSWAS 178 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~ 178 (189)
+.+++|+|+|.|.||+.+++.++..| .+|..++|++..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~r 214 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYER 214 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 78999999999999999999999876 579999998643
No 74
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.02 E-value=0.024 Score=46.32 Aligned_cols=54 Identities=33% Similarity=0.519 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEE
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA 172 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~ 172 (189)
.+++-=++..+-..++++ ...++.|+|+.|-|+|++|+.+|+.|...|++|++.
T Consensus 8 ~aTg~GV~~~~~~~~~~~---~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~v 61 (244)
T PF00208_consen 8 EATGYGVAYAIEAALEHL---GGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAV 61 (244)
T ss_dssp THHHHHHHHHHHHHHHHT---TCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEE
T ss_pred cchHHHHHHHHHHHHHHc---CCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 455556666666666652 334799999999999999999999999999999887
No 75
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.0088 Score=53.25 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=35.4
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-..+.+++|.|+|+|.+|+++|+.|...|++|.++|+..
T Consensus 10 ~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 10 LPQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred cccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 356788999999999999999999999999999999754
No 76
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.99 E-value=0.011 Score=52.71 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=36.3
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+.++.+++++|+|.|.+|++++..+..+|++|..++|+..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~ 366 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKA 366 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4578899999999999999999999999999999998753
No 77
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.71 E-value=0.014 Score=46.20 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=35.6
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS 175 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 175 (189)
....|..++|+|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 15 ~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 15 IVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3567889999999999999999999999999 69999987
No 78
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.71 E-value=0.014 Score=46.20 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
+..|.+++|.|+|+|.+|.++|+.|...|+ ++..+|+..
T Consensus 16 q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 16 QQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 467899999999999999999999999998 799999864
No 79
>PLN00203 glutamyl-tRNA reductase
Probab=95.68 E-value=0.014 Score=52.59 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=35.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS 178 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 178 (189)
++.+++|+|||.|.+|+.+++.|...|+ +|+.++|+...
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~er 302 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEER 302 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHH
Confidence 5889999999999999999999999997 69999998654
No 80
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.60 E-value=0.012 Score=43.35 Aligned_cols=36 Identities=39% Similarity=0.526 Sum_probs=30.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS 178 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 178 (189)
+++|.|+|+|.+|.++|+.|...|+ ++..+|...=+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 6899999999999999999998898 68888875433
No 81
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.022 Score=49.60 Aligned_cols=41 Identities=37% Similarity=0.634 Sum_probs=36.4
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+.++.|+||.|=|+|+.|+..|+.|...|++|+++|-+..
T Consensus 201 ~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 201 LGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred cCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 45559999999999999999999999988999999986654
No 82
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.53 E-value=0.043 Score=44.24 Aligned_cols=54 Identities=24% Similarity=0.384 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCE---EEEEcCCC
Q 044056 119 AELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVK---IIAAKRSW 176 (189)
Q Consensus 119 AE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~---V~~~~r~~ 176 (189)
+=-+++.++...|. .+.++.++++.|+|.|..|+.+|+.|...|++ |..+||+.
T Consensus 5 ~~v~lAG~~~al~~----~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 5 AIVTLAGLLNALKL----VGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred HHHHHHHHHHHHHH----hCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 44556666666664 45679999999999999999999999999985 99999984
No 83
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.019 Score=47.93 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCCCCCCCEEEEEcCCHH-HHHHHHHHccCCCEEEEEcCCC
Q 044056 137 TGETLLGKTVFISGFGNI-GVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~I-G~~vA~~l~afG~~V~~~~r~~ 176 (189)
.+.++.||++.|||.|.| |+-+|.+|...|++|..+....
T Consensus 152 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t 192 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT 192 (285)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC
Confidence 467899999999999999 9999999999999998876543
No 84
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.39 E-value=0.022 Score=45.82 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=35.0
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 177 (189)
+..|.+++|.|+|+|.+|.++|+.|...|+ ++..+|...-
T Consensus 16 q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 16 QEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred HHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 457889999999999999999999999998 6888887543
No 85
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.38 E-value=0.03 Score=46.16 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
...+++++|+|.|.+|++++..+...|.+|..++|+..
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~ 151 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVS 151 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45689999999999999999999989999999999754
No 86
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.37 E-value=0.016 Score=49.00 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=34.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCc
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASH 179 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~ 179 (189)
=.|+|+.|+|+|.+|.++++-++++|+ +|++.|-.+.+.
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf 230 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKF 230 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHH
Confidence 358999999999999999999999998 699999876543
No 87
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.36 E-value=0.024 Score=47.63 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEc-CCC
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAK-RSW 176 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~-r~~ 176 (189)
..++.-++.++=. ...++.||+|+||| .|.+|+.+|.+|..-|++|..|+ |+.
T Consensus 139 PcTp~ai~~ll~~--------~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~ 193 (296)
T PRK14188 139 PCTPLGCMMLLRR--------VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR 193 (296)
T ss_pred CCCHHHHHHHHHH--------hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC
Confidence 4455555544422 34589999999999 99999999999998899999995 664
No 88
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.35 E-value=0.036 Score=36.86 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=32.0
Q ss_pred EEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056 145 TVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH 179 (189)
Q Consensus 145 tvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~ 179 (189)
++.|||-|.||-++|..++.+|.+|..+.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 57899999999999999999999999999887655
No 89
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.33 E-value=0.029 Score=46.73 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS 178 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 178 (189)
..+.++++.|+|.|..|++++..|...|+ +|..+||+..+
T Consensus 123 ~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~k 163 (284)
T PRK12549 123 PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPAR 163 (284)
T ss_pred cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence 35678999999999999999999999998 79999998543
No 90
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.29 E-value=0.031 Score=49.66 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=35.3
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
+..+.++++.|+|.|.+|.++|+.|...|.+|.++|+..
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 446789999999999999999999999999999999764
No 91
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.10 E-value=0.037 Score=47.33 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
+..|++++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 568999999999999999999999999998 788899865
No 92
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.06 E-value=0.037 Score=46.16 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=34.7
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
..+.+|++.|+|.|.+|++++..|...|++ |..++|+.
T Consensus 122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 357899999999999999999999999997 99999975
No 93
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.00 E-value=0.013 Score=43.06 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEE-cCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAA-KRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~-~r~~ 176 (189)
-...+|||||.|+.|..+++.|+.-|..|.++ +|+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence 34679999999999999999999999998775 4553
No 94
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.00 E-value=0.054 Score=46.36 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=35.4
Q ss_pred CCCCCCCCCEEEEEcC-CHHHHHHHHHHc-cCCC-EEEEEcCCCC
Q 044056 136 PTGETLLGKTVFISGF-GNIGVELAKRLR-PFGV-KIIAAKRSWA 177 (189)
Q Consensus 136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~-afG~-~V~~~~r~~~ 177 (189)
..+.++++|+|.|+|. |.||+.+++.|. ..|. +++.++|+..
T Consensus 148 ~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~ 192 (340)
T PRK14982 148 RLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE 192 (340)
T ss_pred HhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH
Confidence 3456899999999998 899999999996 5674 8999998743
No 95
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.047 Score=45.66 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..++.-++.++-. ...++.||++.|||.|. +|+.+|..|...|++|..++++.+
T Consensus 139 PcTp~ai~~ll~~--------~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~ 193 (286)
T PRK14175 139 PCTPLGIMEILKH--------ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK 193 (286)
T ss_pred CCcHHHHHHHHHH--------cCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch
Confidence 4455555444433 45689999999999999 999999999999999998887543
No 96
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.91 E-value=0.044 Score=46.83 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=35.3
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA 177 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 177 (189)
.++.++++.|||.|.+|+.+|+.|..-|. +|...+|+..
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 46999999999999999999999999996 5999999854
No 97
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.85 E-value=0.042 Score=44.83 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
+..|++++|+|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 27 Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 27 QEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred HHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 568999999999999999999999998887 688888653
No 98
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.84 E-value=0.041 Score=42.08 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..+...+|.|+|.|+.|+..++.|+++|++|..+|....
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~ 54 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE 54 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence 456679999999999999999999999999999998653
No 99
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.74 E-value=0.053 Score=44.34 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=31.4
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
-++-|+|-|.+++++|+.++.+|++|..+|+++.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 5799999999999999999999999999997744
No 100
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=94.72 E-value=0.035 Score=46.78 Aligned_cols=35 Identities=29% Similarity=0.684 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r 174 (189)
-+.||.+-|.|||.+|+-.|+.|++||++|+...-
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEi 245 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEI 245 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEecc
Confidence 56799999999999999999999999999998643
No 101
>PRK08328 hypothetical protein; Provisional
Probab=94.66 E-value=0.047 Score=44.08 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=34.7
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
....|.+++|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus 21 ~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 21 GQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3567889999999999999999999999998 588888654
No 102
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.59 E-value=0.05 Score=46.55 Aligned_cols=39 Identities=33% Similarity=0.469 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
+..|..++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 19 Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 19 QQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 467899999999999999999999999999 899999854
No 103
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.55 E-value=0.046 Score=43.11 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=36.1
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWAS 178 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~ 178 (189)
.+..|.+++|.|+|+|.+|.++|+.|...|+. +..+|...-+
T Consensus 15 ~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve 57 (197)
T cd01492 15 AQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVT 57 (197)
T ss_pred HHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCccc
Confidence 35678899999999999999999999999985 8888876433
No 104
>PRK04148 hypothetical protein; Provisional
Probab=94.54 E-value=0.039 Score=41.00 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
+++++.+||+| -|..+|+.|+..|.+|++.|.++..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~a 51 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKA 51 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHH
Confidence 46899999999 9999999999999999999988763
No 105
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.53 E-value=0.094 Score=46.10 Aligned_cols=95 Identities=14% Similarity=0.191 Sum_probs=60.2
Q ss_pred CeEEEEcCCCCCcCChhHH-----hhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC-------------------
Q 044056 79 MNLIIRFRVGLEGVDIDAL-----TNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI------------------- 134 (189)
Q Consensus 79 Lk~I~~~~aG~d~id~~~~-----~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~------------------- 134 (189)
++-+...++|.|..-+-+- .++-...+...|. ...+=+..+=..+...|++.
T Consensus 96 v~HLfrVasGLdSmVlGE~QIlgQVK~A~~~A~~~g~----~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~l 171 (414)
T PRK13940 96 IMHLMKLACGLESMVLGEPQILGQVKDSYTLSKKNHA----IGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITL 171 (414)
T ss_pred HHHHHHHHhccchhhcCcHHHHHHHHHHHHHHHHcCC----chHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHH
Confidence 4455566777776432110 0111222222222 23455555666666666665
Q ss_pred -CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056 135 -VPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA 177 (189)
Q Consensus 135 -~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 177 (189)
......+.|+++.|+|.|.+|+.+|+.|...|. +|..++|+..
T Consensus 172 a~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ 216 (414)
T PRK13940 172 AKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIE 216 (414)
T ss_pred HHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 112346889999999999999999999999996 6999999854
No 106
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.51 E-value=0.063 Score=43.69 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCc
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASH 179 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~ 179 (189)
+..|++++|.|+|+|.+|..+|+.|...|. ++..+|+..-+.
T Consensus 19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 19 QEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 457899999999999999999999998887 588888765443
No 107
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.37 E-value=0.075 Score=48.66 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.....|+|||||-|..|+.+++.++.+|++|+.+|+.+.
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED 56 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 457899999999999999999999999999999998754
No 108
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.28 E-value=0.053 Score=38.31 Aligned_cols=33 Identities=33% Similarity=0.623 Sum_probs=27.9
Q ss_pred EEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 146 VFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 146 vGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
+-|+|+|++|+.+++.|+..+.+|...++.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~ 33 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER 33 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH
Confidence 569999999999999999977799999987643
No 109
>PRK06841 short chain dehydrogenase; Provisional
Probab=94.28 E-value=0.071 Score=42.65 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
++.||++.|.|- |.||+++|+.+...|++|+..+|+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED 50 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 578999999995 99999999999999999999998754
No 110
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.28 E-value=0.06 Score=47.20 Aligned_cols=40 Identities=35% Similarity=0.269 Sum_probs=35.4
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
..+..+++.|+|+|.+|+.+++.|...|.+|+.+|+.+..
T Consensus 227 ~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~ 266 (453)
T PRK09496 227 LEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPER 266 (453)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 3456899999999999999999999999999999887653
No 111
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.27 E-value=0.092 Score=43.84 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=36.2
Q ss_pred CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCC
Q 044056 137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.+.++.||++.|+|.|. .|+.+|..|...|++|..+++..
T Consensus 153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t 193 (283)
T PRK14192 153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT 193 (283)
T ss_pred cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 46789999999999998 99999999999999999888743
No 112
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=94.25 E-value=0.05 Score=46.54 Aligned_cols=34 Identities=38% Similarity=0.445 Sum_probs=32.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-++|||||+|+.|+-.|+.+..-|-.|+..||+.
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd 85 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD 85 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch
Confidence 4789999999999999999999999999999975
No 113
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.20 E-value=0.054 Score=45.23 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056 115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r 174 (189)
...++.-++-++-. .+.++.||+++|||. |-+|+.+|.+|..-|++|..|..
T Consensus 138 ~PcTp~avi~lL~~--------~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s 190 (284)
T PRK14179 138 IPCTPAGIMEMFRE--------YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS 190 (284)
T ss_pred cCCCHHHHHHHHHH--------hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECC
Confidence 34556655554432 467899999999999 99999999999999999999954
No 114
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.12 E-value=0.055 Score=46.80 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=51.8
Q ss_pred hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC-----CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-E
Q 044056 95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI-----VPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-K 168 (189)
Q Consensus 95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~-----~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~ 168 (189)
..+.+.|.++...+.. ....... ..|++. ...+..|.+++|.|+|+|.+|..+|+.|...|+ +
T Consensus 93 ~~W~~~g~p~~~~~~~---s~~~~~~--------y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~ 161 (376)
T PRK08762 93 SAWKDAGLPLERPRLL---TDEQDER--------YSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGT 161 (376)
T ss_pred HHHHhcCCccccccCC---CHHHHHH--------HHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCe
Confidence 4456678888877665 2233222 456655 112457999999999999999999999999998 6
Q ss_pred EEEEcCC
Q 044056 169 IIAAKRS 175 (189)
Q Consensus 169 V~~~~r~ 175 (189)
+..+|+.
T Consensus 162 i~lvD~d 168 (376)
T PRK08762 162 LGIVDHD 168 (376)
T ss_pred EEEEeCC
Confidence 8899886
No 115
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.09 E-value=0.1 Score=37.99 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=27.3
Q ss_pred EEEEEcC-CHHHHHHHHHHcc-CCCE-EEEEcCCC
Q 044056 145 TVFISGF-GNIGVELAKRLRP-FGVK-IIAAKRSW 176 (189)
Q Consensus 145 tvGIvG~-G~IG~~vA~~l~a-fG~~-V~~~~r~~ 176 (189)
+|+|+|+ |+.|+.+++.+.. =+++ +-++++..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 6999999 9999999999986 7888 55666665
No 116
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.06 E-value=0.08 Score=41.75 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~ 177 (189)
...|++++|.|+|+|.+|.++|+.|..-|.+ +..+|...-
T Consensus 14 q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 14 QNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred HHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 4578899999999999999999999988885 888886543
No 117
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.05 E-value=0.087 Score=43.81 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=34.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 177 (189)
.+.++++.|+|.|..|++++..|...|+ +|..++|+..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ 160 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPD 160 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 4789999999999999999999999998 5999999854
No 118
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=93.97 E-value=0.1 Score=37.57 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=37.4
Q ss_pred CEEEEEc----CCHHHHHHHHHHccCCCEEEEEcCCCCCcccccccCC
Q 044056 144 KTVFISG----FGNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSS 187 (189)
Q Consensus 144 ktvGIvG----~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~ 187 (189)
|++.||| -++.|..+.+.++..|.+|+.+++...+..+..|+.|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~s 48 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPS 48 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSS
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeecc
Confidence 6899999 7999999999999999999999999988888777655
No 119
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.93 E-value=0.099 Score=47.37 Aligned_cols=40 Identities=30% Similarity=0.537 Sum_probs=35.8
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..++.+|++.|+|.|.+|++++..|...|++|..++|+.+
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 3467899999999999999999999999999999998743
No 120
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.79 E-value=0.079 Score=42.25 Aligned_cols=40 Identities=28% Similarity=0.241 Sum_probs=35.2
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
.+..|++++|.|+|+|.+|..+|+.|...|.. +..+|...
T Consensus 22 ~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 22 LLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred HHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45678999999999999999999999988885 88888763
No 121
>PRK06153 hypothetical protein; Provisional
Probab=93.72 E-value=0.065 Score=46.57 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=33.4
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS 175 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 175 (189)
..|++++|+|||+|.+|..++..|...|. ++..+|.-
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 47899999999999999999999998898 68888864
No 122
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.67 E-value=0.099 Score=42.88 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
.|++|.|+|.|.||...++.++++|++ |+..+++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 689999999999999999999999997 88887654
No 123
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.66 E-value=0.14 Score=42.96 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCCCccc
Q 044056 122 SIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWASHSQ 181 (189)
Q Consensus 122 ~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~ 181 (189)
.++.++++...+.....++++|++|.|=|-|+ +||++|.-+...|+++..||.......+
T Consensus 17 ~~~~~~s~~~~~l~~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~e 77 (300)
T KOG1201|consen 17 LLALLESLIKLLLPKPLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEE 77 (300)
T ss_pred HHHHHHHHHHHhcccchhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHH
Confidence 34455555555556688999999999999985 8999999999999999999988765444
No 124
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.63 E-value=0.078 Score=44.62 Aligned_cols=37 Identities=38% Similarity=0.493 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-|.||||+|||||+-|.+=|.-|+--|.+|++=-|..
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g 51 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKG 51 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCC
Confidence 6889999999999999999999999999977655543
No 125
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.58 E-value=0.11 Score=44.05 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
..|++|.|+|.|.||...++.+++.|++|++++++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 36899999999999999999999999999999874
No 126
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.54 E-value=0.092 Score=44.34 Aligned_cols=36 Identities=36% Similarity=0.606 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA 177 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 177 (189)
.|++|.|.|.|.+|...++.+++.|+ +|++.+++..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~ 205 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR 205 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 58999999999999999999999999 5888887643
No 127
>PLN02740 Alcohol dehydrogenase-like
Probab=93.34 E-value=0.11 Score=44.72 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 177 (189)
-.|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE 234 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence 358999999999999999999999999 5999887643
No 128
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.29 E-value=0.11 Score=41.92 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEcC-C-HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 139 ETLLGKTVFISGF-G-NIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 139 ~~l~gktvGIvG~-G-~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..+.+|++.|.|- | .||+++++.+...|++|+..+|...
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~ 53 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHER 53 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4567899999997 6 6999999999999999999988654
No 129
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.28 E-value=0.12 Score=47.81 Aligned_cols=61 Identities=28% Similarity=0.308 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHh--cCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 116 ASCAELSIYLMLGLLR--KHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R--~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
...||-++-|=|-+.| -++......|++.+|.|+|.|.+|..+|+.|.+.|++ +..+|...
T Consensus 309 ~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 309 KRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred HHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 5788888877666654 3333334789999999999999999999999999994 88888643
No 130
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.25 E-value=0.13 Score=42.82 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS 175 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~ 175 (189)
.++++.|+|.|.||...++.++++|++ |++.++.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~ 178 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN 178 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 578999999999999999999999998 5556553
No 131
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.22 E-value=0.11 Score=43.70 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.|.+|.|.|.|.+|...++.++++|++|++.+++..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~ 200 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAA 200 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence 489999999999999999999999999999887643
No 132
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.22 E-value=0.14 Score=46.55 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=34.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...|++|.|||.|.+|-..|..|+..|.+|+.+++..
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4579999999999999999999999999999999754
No 133
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.18 E-value=0.15 Score=43.48 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|++|.|.|.|.||...++.++++|++|+..+.+.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999999999999998877654
No 134
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.14 E-value=0.16 Score=44.64 Aligned_cols=42 Identities=36% Similarity=0.479 Sum_probs=36.4
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCcc
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASHS 180 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~~ 180 (189)
.+|.++++.|||.|.+|+.+|+.|...|. +|+..+|+.....
T Consensus 174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~ 216 (414)
T COG0373 174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE 216 (414)
T ss_pred cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence 44999999999999999999999999995 6888888865543
No 135
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.10 E-value=0.14 Score=44.13 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
+..|.+++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 567899999999999999999999999998 588888754
No 136
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.07 E-value=0.14 Score=43.31 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|.+|.|+|.|.||...++.+++.|.+|++.+++.
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~ 200 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 48999999999999999999999999999988754
No 137
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=93.03 E-value=0.33 Score=42.53 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=60.0
Q ss_pred hCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC---EEEEEcCC
Q 044056 99 NCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV---KIIAAKRS 175 (189)
Q Consensus 99 ~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~---~V~~~~r~ 175 (189)
+..|+|.|.-- +.+|=-+++.+|+.+|- .++.|++.+|.+.|.|.-|-++++.+.+.|+ +|+.+|+.
T Consensus 165 ~~~IPvFhDDq------qGTaiv~lA~llnalk~----~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 165 RMNIPVFHDDQ------QGTAIVTLAALLNALKL----TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred cCCCCcccccc------cHHHHHHHHHHHHHHHH----hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 45688888533 45788899999999984 7899999999999999999999999999999 59999987
Q ss_pred CCC
Q 044056 176 WAS 178 (189)
Q Consensus 176 ~~~ 178 (189)
+--
T Consensus 235 G~l 237 (432)
T COG0281 235 GLL 237 (432)
T ss_pred Ccc
Confidence 543
No 138
>PRK08223 hypothetical protein; Validated
Probab=92.92 E-value=0.15 Score=42.63 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=34.6
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
.+..|++++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 21 ~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 21 EQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4567899999999999999999999999998 577777653
No 139
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=92.91 E-value=0.17 Score=43.25 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
-.|.+|.|+|.|.||...++.++++|+ +|++.+++.
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~ 220 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP 220 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 348999999999999999999999999 799987754
No 140
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=92.89 E-value=0.32 Score=40.52 Aligned_cols=55 Identities=25% Similarity=0.382 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccC----CC-------EEEEEcCCC
Q 044056 118 CAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPF----GV-------KIIAAKRSW 176 (189)
Q Consensus 118 vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~af----G~-------~V~~~~r~~ 176 (189)
+|=-+++.+|+..|- .+..|.+.+|.|+|.|.-|-.+|+.+... |+ +++.+|+.+
T Consensus 4 Ta~V~lAgllnAlk~----~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~G 69 (279)
T cd05312 4 TAAVALAGLLAALRI----TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKG 69 (279)
T ss_pred HHHHHHHHHHHHHHH----hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCC
Confidence 566788999999984 67889999999999999999999999877 87 799999875
No 141
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.87 E-value=0.15 Score=41.12 Aligned_cols=39 Identities=31% Similarity=0.464 Sum_probs=33.8
Q ss_pred CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..+.+++|.|+| .|.||+.+++.|..-|.+|++..|...
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~ 52 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD 52 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 456689999999 599999999999988999999887654
No 142
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=92.80 E-value=0.16 Score=43.32 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 177 (189)
-.|.+|.|+|.|.||...++.++++|+ +|++.+++..
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~ 223 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPS 223 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 358999999999999999999999999 7999887643
No 143
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.77 E-value=0.16 Score=42.55 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
.|.+|.|+|.|.+|..+++.++.+|++ |++.+++.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~ 198 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP 198 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 389999999999999999999999999 99988754
No 144
>PRK06141 ornithine cyclodeaminase; Validated
Probab=92.68 E-value=0.15 Score=43.07 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHc-cCC-CEEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLR-PFG-VKIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~-afG-~~V~~~~r~~~~ 178 (189)
..++|+|+|+|..|+..++.+. .++ -+|..|+|++..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~ 162 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK 162 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 4789999999999999998554 356 579999998654
No 145
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.67 E-value=0.26 Score=40.84 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=36.8
Q ss_pred CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.....+.++++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus 33 ~~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~ 75 (293)
T PRK05866 33 RQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRED 75 (293)
T ss_pred CCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3456788999999996 99999999999999999999998753
No 146
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=92.65 E-value=0.16 Score=43.71 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|++|.|.|.|.||...++.++++|++|++.+++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58999999999999999999999999999987654
No 147
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.56 E-value=0.16 Score=42.37 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=37.1
Q ss_pred CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
...++.||++.|||.|. +|+-+|.+|...|++|..+.++.+.
T Consensus 153 ~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~ 195 (285)
T PRK10792 153 YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKN 195 (285)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCC
Confidence 45689999999999999 9999999999999999998765443
No 148
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.55 E-value=0.16 Score=44.01 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=35.9
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
.+..|.+++|.|+|+|.+|..+|+.|...|+ ++..+|...
T Consensus 35 ~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 35 QQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4578999999999999999999999999998 788888753
No 149
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.47 E-value=0.23 Score=39.44 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..|++|.|.|.|.+|+.+++.++..|.+|++.+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 468999999999999999999999999999998864
No 150
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=92.43 E-value=0.15 Score=43.50 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
-.|.+|.|+|.|.||...++.++++|+ +|++.+++.
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~ 221 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP 221 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 358999999999999999999999999 699887764
No 151
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.40 E-value=0.15 Score=43.30 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
.|++|.|.|.|.||+.+++.++++|++ |++.+++.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~ 211 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD 211 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 489999999999999999999999995 98887754
No 152
>PRK07411 hypothetical protein; Validated
Probab=92.36 E-value=0.18 Score=43.96 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=34.5
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
+..|+..+|+|||+|.+|..+|+.|...|. ++..+|...
T Consensus 33 q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 33 QKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 468999999999999999999999999888 588888754
No 153
>PRK12862 malic enzyme; Reviewed
Probab=92.34 E-value=0.55 Score=44.50 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=57.8
Q ss_pred CeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC---EEEEEcCCC
Q 044056 101 AIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV---KIIAAKRSW 176 (189)
Q Consensus 101 gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~---~V~~~~r~~ 176 (189)
+|++.|. +. +.+|=-+++.+|+.+|- .++.+.+.+|.|+|.|.-|-.+|+.+...|. +++.+|+.+
T Consensus 161 ~ip~f~D-D~-----~GTa~v~la~l~~a~~~----~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 229 (763)
T PRK12862 161 KIPVFHD-DQ-----HGTAIIVAAALLNGLKL----VGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKG 229 (763)
T ss_pred CCceEec-Cc-----ccHHHHHHHHHHHHHHH----hCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 6999997 33 56788899999999984 6789999999999999999999999998899 799999764
No 154
>PRK12367 short chain dehydrogenase; Provisional
Probab=92.34 E-value=0.21 Score=40.45 Aligned_cols=39 Identities=36% Similarity=0.491 Sum_probs=34.3
Q ss_pred CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
+..+.||++.|.|- |.||+++|+.+..-|++|+..+|..
T Consensus 9 ~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 9 QSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 34578899999987 7899999999999999999998875
No 155
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.30 E-value=0.33 Score=37.35 Aligned_cols=41 Identities=32% Similarity=0.361 Sum_probs=33.7
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
...++.||+|.|||-|..+-.+|..|...|-+|..+.|++.
T Consensus 161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 161 DPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred ChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 34578899999999999999999999999999999988763
No 156
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=92.28 E-value=0.23 Score=44.26 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=32.7
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS 180 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~ 180 (189)
+++.|||-|-||-++|..++.||.+|..+.+...-.+
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 7899999999999999999999999999987655433
No 157
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.14 E-value=0.2 Score=41.87 Aligned_cols=43 Identities=40% Similarity=0.483 Sum_probs=36.5
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCCCcc
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWASHS 180 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~~~ 180 (189)
...|.+.+|.|+|+|.+|.++|+-|..-|.+ |..+|...-+..
T Consensus 14 q~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~s 57 (286)
T cd01491 14 MKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWS 57 (286)
T ss_pred HHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchh
Confidence 4578899999999999999999999999985 888987654443
No 158
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.12 E-value=0.2 Score=41.88 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..++.-++.++=. .+.++.||++.|||.|. +|+-+|.+|...|++|..++...+
T Consensus 145 PcTp~av~~ll~~--------~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~ 199 (287)
T PRK14176 145 PCTPHGVIRALEE--------YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD 199 (287)
T ss_pred CCcHHHHHHHHHH--------cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC
Confidence 4455555544432 46689999999999999 999999999999999998885543
No 159
>PRK12861 malic enzyme; Reviewed
Probab=92.08 E-value=0.47 Score=44.81 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=58.1
Q ss_pred CeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC---EEEEEcCCC
Q 044056 101 AIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV---KIIAAKRSW 176 (189)
Q Consensus 101 gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~---~V~~~~r~~ 176 (189)
.|++.|. +. +.+|=-+++.+|+.+|- .+..+.+.+|.|.|.|.-|..+|+.+...|. +++.+|+.+
T Consensus 157 ~ipvf~D-D~-----qGTa~v~lA~llnal~~----~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~G 225 (764)
T PRK12861 157 KIPVFHD-DQ-----HGTAITVSAAFINGLKV----VGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEG 225 (764)
T ss_pred CCCeecc-cc-----chHHHHHHHHHHHHHHH----hCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCC
Confidence 7999986 33 56788899999999984 6788999999999999999999999999999 799999765
No 160
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=92.08 E-value=0.6 Score=44.13 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=58.1
Q ss_pred CCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC---EEEEEcCCC
Q 044056 100 CAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV---KIIAAKRSW 176 (189)
Q Consensus 100 ~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~---~V~~~~r~~ 176 (189)
.+|++.|. +. +.+|=-+++.+|+.+|- .+..+.+.+|.|.|.|.-|-.+|+.+...|. +++.+|+.+
T Consensus 152 ~~ip~f~D-D~-----~GTa~v~lA~l~na~~~----~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 221 (752)
T PRK07232 152 MDIPVFHD-DQ-----HGTAIISAAALLNALEL----VGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG 221 (752)
T ss_pred cCCCeecc-cc-----chHHHHHHHHHHHHHHH----hCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 36899986 33 56788899999999984 6789999999999999999999999998898 799999874
No 161
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.05 E-value=0.086 Score=48.67 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=33.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS 180 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~ 180 (189)
...+-|+|+|++|+.+|+.|+..|.++...|..++..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~ 437 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIE 437 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 46899999999999999999999999999998765433
No 162
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=92.03 E-value=0.23 Score=43.42 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=24.1
Q ss_pred CEEEEEcCCHHHHHHHHHHc--cC-CCEEEEEc
Q 044056 144 KTVFISGFGNIGVELAKRLR--PF-GVKIIAAK 173 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~--af-G~~V~~~~ 173 (189)
.+|||.|+|+||+.+.+.+. .| ..+|.+.+
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaIN 93 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIN 93 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 58999999999999999986 34 46788443
No 163
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.01 E-value=0.079 Score=48.15 Aligned_cols=37 Identities=19% Similarity=0.469 Sum_probs=32.7
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS 180 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~ 180 (189)
-.+-|+|+|++|+.+|+.|+..|.+|+..|+.++..+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~ 454 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVD 454 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHH
Confidence 5688999999999999999999999999998765443
No 164
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.00 E-value=0.17 Score=43.23 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA 177 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 177 (189)
.|.+|.|.|.|.||...++.++..|+ +|++.+++..
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~ 227 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNED 227 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence 48999999999999999999999999 5998887643
No 165
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.94 E-value=0.3 Score=39.22 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056 139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
..+.||++.|.|- |.||+++|+.+...|++|+..++.
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3588999999986 899999999999999999999887
No 166
>PRK06196 oxidoreductase; Provisional
Probab=91.94 E-value=0.31 Score=40.66 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..+.+|++.|.|- |.||+++|+.+..-|++|+..+|+..
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4578999999997 88999999999999999999998754
No 167
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.91 E-value=0.25 Score=40.93 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
....|++++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 24 ~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 24 ALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred HHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3467899999999999999999999998884 688888653
No 168
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=91.87 E-value=0.29 Score=40.65 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
-.|.+|.|+|.|.+|+.+++.++++|++|+..+++..
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~ 197 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPD 197 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4578999999999999999999999999999887653
No 169
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.86 E-value=0.22 Score=43.44 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=34.1
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
...|.+++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 37 q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 37 QKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 457889999999999999999999998887 588888654
No 170
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=91.84 E-value=0.27 Score=35.33 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=25.3
Q ss_pred EEEEEc-CCHHHHHHHHHHc-cCCCEEEEE-cCCC
Q 044056 145 TVFISG-FGNIGVELAKRLR-PFGVKIIAA-KRSW 176 (189)
Q Consensus 145 tvGIvG-~G~IG~~vA~~l~-afG~~V~~~-~r~~ 176 (189)
+||||| .|.+|+++.++|. -..+++... +++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 699999 9999999999997 667775554 4443
No 171
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.76 E-value=0.29 Score=41.61 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=32.6
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.|.+|.|.|. |.+|...++.++++|++|++.+++.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~ 193 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS 193 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 35899999999 9999999999999999999987654
No 172
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=91.72 E-value=0.24 Score=41.58 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.|.++.|.|.|.+|+.+++.++++|++|++.+++.
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~ 203 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSP 203 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 457899999999999999999999999999998864
No 173
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=91.72 E-value=0.23 Score=44.22 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHH
Q 044056 76 ANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIG 155 (189)
Q Consensus 76 ~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG 155 (189)
+|=|+.+...--|--+||+..+...- . .. + ....+-+|+-.-+-...- .......++|||-|||+||
T Consensus 73 ~~~~~~~~~~~l~~~~~d~g~l~~~~-~--~~-~----~~~~~~~~~~~~l~~~~~-----~~~~~~~~~V~InGFGRIG 139 (477)
T PRK08289 73 FPILEALSKLDLGPARVDIGKLAVKY-K--AE-G----DGSDVEAFVAEELADAVG-----GADDIEPRDVVLYGFGRIG 139 (477)
T ss_pred HHHHHHHHhCCCCcccccHHHHHHHH-h--hc-c----CCCcHHHHHHHHHhhhhc-----CCCCCCCceEEEECCCHHH
Confidence 34455555555666678876553221 1 11 1 224455554332222111 1113557899999999999
Q ss_pred HHHHHHHc-c----CCCEEEEEc
Q 044056 156 VELAKRLR-P----FGVKIIAAK 173 (189)
Q Consensus 156 ~~vA~~l~-a----fG~~V~~~~ 173 (189)
|.++|.+- . -+++|.+..
T Consensus 140 R~v~R~~~~~~~~~~~l~lvAIn 162 (477)
T PRK08289 140 RLLARLLIEKTGGGNGLRLRAIV 162 (477)
T ss_pred HHHHHHHHhccCCCCCeEEEEEe
Confidence 99999873 2 578888884
No 174
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=91.66 E-value=0.36 Score=40.31 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
+.++.+|++.|+|.|..+++++-.+...|+ +|..++|+.
T Consensus 119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 346789999999999999999999988897 799999985
No 175
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=91.60 E-value=0.3 Score=41.59 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
..|.+|.|+|.|.+|...++.++++|+ +|++.+++.
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~ 219 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINE 219 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 458999999999999999999999999 699888753
No 176
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=91.56 E-value=0.33 Score=40.20 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.|.+|.|.|.|.+|+.+++.++..|.+|++.+++.
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~ 189 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHS 189 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 458999999999999999999999999999887653
No 177
>PRK06197 short chain dehydrogenase; Provisional
Probab=91.50 E-value=0.3 Score=40.46 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=35.0
Q ss_pred CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..++.||++.|.|- |.||+++|+.+...|++|+..+|+..
T Consensus 11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~ 51 (306)
T PRK06197 11 IPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD 51 (306)
T ss_pred cccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45788999999985 89999999999999999999888643
No 178
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=91.47 E-value=0.32 Score=40.68 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.|.+|.|.|.|.+|+.+++.++++|++|++.+++.
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 358999999999999999999999999999998764
No 179
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=91.47 E-value=0.32 Score=40.78 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=32.4
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.|.+|.|.|. |.+|+.+++.++.+|++|++..++.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35899999998 9999999999999999999887754
No 180
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=91.46 E-value=0.44 Score=39.18 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-----------EEEEEcCCC
Q 044056 118 CAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-----------KIIAAKRSW 176 (189)
Q Consensus 118 vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-----------~V~~~~r~~ 176 (189)
+|=-+++.+|+.+|- .+..|.+.++.|+|.|.-|-.+|+.+...++ +++.+|+..
T Consensus 4 TaaV~lAgllnAlk~----~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~G 69 (254)
T cd00762 4 TASVAVAGLLAALKV----TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKG 69 (254)
T ss_pred hHHHHHHHHHHHHHH----hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCC
Confidence 466788899999984 6788999999999999999999999988777 588888764
No 181
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.46 E-value=0.36 Score=38.91 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=37.5
Q ss_pred CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
+...++.|+.|.|||-|.++..=++.|..+|++|..+++...+
T Consensus 18 pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~ 60 (223)
T PRK05562 18 FISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSK 60 (223)
T ss_pred eeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence 3456788999999999999999889998999999999987654
No 182
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.36 E-value=0.37 Score=40.18 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS 178 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 178 (189)
++.+|++.|+|.|..|++++--|...|+ +|..++|+..+
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~k 163 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSR 163 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence 4668999999999999999999999998 68899997543
No 183
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.28 E-value=0.26 Score=46.44 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=32.0
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
++|+|||.|.+|..+|..+..-|++|..||++...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~ 370 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAG 370 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHH
Confidence 68999999999999999999889999999987643
No 184
>PLN02780 ketoreductase/ oxidoreductase
Probab=91.18 E-value=0.48 Score=39.95 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
..|+++.|.|. |.||+++|+.+..-|++|+.++|+...
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~ 89 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDK 89 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence 37999999995 789999999999999999999987643
No 185
>PRK08324 short chain dehydrogenase; Validated
Probab=91.14 E-value=0.37 Score=44.92 Aligned_cols=42 Identities=31% Similarity=0.438 Sum_probs=36.7
Q ss_pred CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
....+.||++.|.| .|.||+.+|+.+...|++|+..+|+...
T Consensus 416 ~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 416 KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEA 458 (681)
T ss_pred CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHH
Confidence 44567899999999 6999999999999999999999987643
No 186
>PLN02253 xanthoxin dehydrogenase
Probab=91.14 E-value=0.44 Score=38.76 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=34.4
Q ss_pred CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
...+.||++.|.|- |.||+++|+.+..-|++|+..++...
T Consensus 13 ~~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~ 53 (280)
T PLN02253 13 SQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDD 53 (280)
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 44678999999985 78999999999999999999988643
No 187
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.10 E-value=0.12 Score=47.47 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=33.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS 180 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~ 180 (189)
...+-|+|+|++|+.+++.|+..|.+++..|..++..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~ 437 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVN 437 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 45799999999999999999999999999998765443
No 188
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.09 E-value=0.3 Score=41.52 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA 177 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 177 (189)
.|.+|.|+|.|.||-....-+++||+ +|+..|....
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~ 205 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVAN 205 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHH
Confidence 48999999999999999999999998 5888876543
No 189
>PRK13529 malate dehydrogenase; Provisional
Probab=91.08 E-value=1.5 Score=39.94 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=68.5
Q ss_pred cCCCCeEEEEcCCCCCc-CChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH
Q 044056 75 RANPMNLIIRFRVGLEG-VDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN 153 (189)
Q Consensus 75 ~~p~Lk~I~~~~aG~d~-id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~ 153 (189)
.+|+. +|+.==-+..+ +.+-.-.+..|++.|.-= +.+|--+++.+|+..|- .+..|.+.++.|+|.|.
T Consensus 237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi------QGTaaV~LAgll~A~r~----~g~~l~d~riv~~GAGs 305 (563)
T PRK13529 237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI------QGTGAVTLAGLLAALKI----TGEPLSDQRIVFLGAGS 305 (563)
T ss_pred hCCCe-EEehhhcCCchHHHHHHHhccCCCeecccc------chHHHHHHHHHHHHHHH----hCCChhhcEEEEECCCH
Confidence 35665 66655444444 333333455788888532 56788999999999994 67899999999999999
Q ss_pred HHHHHHHHHcc----CCC-------EEEEEcCCC
Q 044056 154 IGVELAKRLRP----FGV-------KIIAAKRSW 176 (189)
Q Consensus 154 IG~~vA~~l~a----fG~-------~V~~~~r~~ 176 (189)
.|-.+|+.+.. -|+ +++.+|+.+
T Consensus 306 AgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~G 339 (563)
T PRK13529 306 AGCGIADQIVAAMVREGLSEEEARKRFFMVDRQG 339 (563)
T ss_pred HHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 99999999975 587 789998874
No 190
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=91.03 E-value=0.33 Score=34.25 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=26.0
Q ss_pred EEEEEcCCHHHHHHHHHHccC--CCEEE-EEcCCCC
Q 044056 145 TVFISGFGNIGVELAKRLRPF--GVKII-AAKRSWA 177 (189)
Q Consensus 145 tvGIvG~G~IG~~vA~~l~af--G~~V~-~~~r~~~ 177 (189)
++||||+|.+|+...+-+... ++++. .+|+++.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~ 37 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPE 37 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHH
Confidence 699999999999999777755 67765 5777643
No 191
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.98 E-value=0.37 Score=38.93 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
-.|.++.|.|.|.+|+.+++.++++|++ |++.+++.
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~ 132 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDA 132 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCH
Confidence 4689999999999999999999999999 99988753
No 192
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.96 E-value=0.3 Score=45.93 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=32.2
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
++|+|||.|.+|..+|..+..-|++|..||++...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA 348 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 68999999999999999999889999999988644
No 193
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=90.94 E-value=0.41 Score=40.56 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=33.6
Q ss_pred CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..+++++|.|.| .|-||+.+++.|..-|.+|+++|+..
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 356789999999 59999999999998899999999854
No 194
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.92 E-value=0.27 Score=41.83 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..|.+|.|.|.|.||..+++.+++.|++|+..+++.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~ 214 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSD 214 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 468999999999999999999999999998887654
No 195
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.85 E-value=0.31 Score=45.82 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=32.0
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
++|+|||.|.+|..+|..+..-|++|..||++...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS 348 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 57999999999999999999889999999988654
No 196
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.85 E-value=0.3 Score=41.28 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHcc-CC-CEEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRP-FG-VKIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~a-fG-~~V~~~~r~~~~ 178 (189)
.|.+|.|+|.|.||...++.++. +| .+|++.+++..+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k 201 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEK 201 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhH
Confidence 58999999999999999999885 65 689999987544
No 197
>PRK06701 short chain dehydrogenase; Provisional
Probab=90.82 E-value=0.45 Score=39.30 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...+.||++.|.| .|.||.++|+.+..-|++|+.+++..
T Consensus 41 ~~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 41 SGKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3578899999998 58899999999999999999998865
No 198
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=90.81 E-value=0.33 Score=42.59 Aligned_cols=39 Identities=36% Similarity=0.519 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..+.||++.|.|- |.||+++|+.+..-|++|+..+|+..
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~ 213 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSD 213 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4678999999987 89999999999999999999988653
No 199
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.80 E-value=0.35 Score=40.74 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
-.|++|.|.|.|.+|...++.++.+|.+ |++.+++.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~ 195 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS 195 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 3589999999999999999999999997 67777654
No 200
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=90.78 E-value=0.42 Score=40.43 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
.|++|.|.|.|.+|+.+++.++.+|+ +|++.+++.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~ 212 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSP 212 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 68999999999999999999999999 899887654
No 201
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.76 E-value=0.41 Score=40.96 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=30.4
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS 178 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 178 (189)
.||.|+|.|.||...++.++.+|+ +|+..|++...
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~R 205 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER 205 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH
Confidence 399999999999999999999997 58888886544
No 202
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.54 E-value=0.43 Score=43.71 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
.-.|+++.|.|. |.||+++++.|...|++|.+++|....
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ek 116 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQR 116 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 345799999986 999999999999999999999887543
No 203
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.51 E-value=0.44 Score=40.95 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=31.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.+++|.|.|- |-||+.+++.|..-|.+|++.+|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 5789999997 9999999999999999999999754
No 204
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.50 E-value=0.35 Score=45.31 Aligned_cols=34 Identities=24% Similarity=0.142 Sum_probs=30.7
Q ss_pred CEEEEEcCCHHHHHHHHHHc-cCCCEEEEEcCCCC
Q 044056 144 KTVFISGFGNIGVELAKRLR-PFGVKIIAAKRSWA 177 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~ 177 (189)
++|+|||.|.+|..+|..+. .-|++|..||++..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 58999999999999999987 57999999999854
No 205
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=90.49 E-value=0.35 Score=42.77 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=26.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHc-c--CCCEEEEEcC
Q 044056 143 GKTVFISGFGNIGVELAKRLR-P--FGVKIIAAKR 174 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~-a--fG~~V~~~~r 174 (189)
-.+|||=|||+|||.+.|.+. . -.++|.+.+-
T Consensus 75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd 109 (442)
T PLN02237 75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 109 (442)
T ss_pred eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECC
Confidence 368999999999999999854 2 4688888764
No 206
>PRK06720 hypothetical protein; Provisional
Probab=90.45 E-value=0.5 Score=36.19 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+.+|++-|.|-+ .||+++|+.+..-|++|+.++++.+
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~ 51 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQE 51 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHH
Confidence 4789999999976 5999999999999999999998644
No 207
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.40 E-value=0.45 Score=39.52 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
..|.+|.|+|.|.+|+.+++.+++.|++ |+..+++.
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~ 194 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNE 194 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 4578999999999999999999999998 88887654
No 208
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.34 E-value=0.45 Score=44.12 Aligned_cols=37 Identities=30% Similarity=0.259 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
-.|++|.|||.|..|...|..|...|.+|..|++...
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4799999999999999999999999999999998643
No 209
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.34 E-value=0.47 Score=39.49 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=31.7
Q ss_pred CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|.+|.|.| -|.+|+.+++.++.+|++|++.+++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 589999999 59999999999999999999887764
No 210
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.28 E-value=0.88 Score=39.95 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEcC----------CHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056 138 GETLLGKTVFISGF----------GNIGVELAKRLRPFG-VKIIAAKRSWAS 178 (189)
Q Consensus 138 ~~~l~gktvGIvG~----------G~IG~~vA~~l~afG-~~V~~~~r~~~~ 178 (189)
+.++.+++|+|+|+ ..-...+++.|...| ++|.+|||...+
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~ 366 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQ 366 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCc
Confidence 56789999999998 567889999999996 999999998544
No 211
>PRK07985 oxidoreductase; Provisional
Probab=90.27 E-value=0.52 Score=39.00 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.+.+|++.|.|- |.||+++|+.|...|++|+..++..
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~ 83 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPV 83 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCc
Confidence 478999999985 8999999999999999999877653
No 212
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=90.25 E-value=0.4 Score=39.56 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|.+|.|.|. |.+|+.+++.++++|++|++.+.+.
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~ 181 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRP 181 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999998 9999999999999999999887654
No 213
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=90.22 E-value=0.36 Score=40.45 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
-.+++|.|.|.|.+|+.+++.++++|++|+..+++..
T Consensus 164 ~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~ 200 (345)
T cd08260 164 KPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDD 200 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3589999999999999999999999999999877643
No 214
>PRK05854 short chain dehydrogenase; Provisional
Probab=90.20 E-value=0.62 Score=38.95 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=35.2
Q ss_pred CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..++.||++-|.| .|.||+++|+.|..-|++|+...|+..
T Consensus 9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~ 49 (313)
T PRK05854 9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRA 49 (313)
T ss_pred CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4578999999998 577999999999999999999988754
No 215
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=90.13 E-value=0.39 Score=39.66 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=31.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.+.+|.|.|. |.+|+.+++.+++.|++|+..+++.
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKA 181 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCH
Confidence 4789999999 9999999999999999999887764
No 216
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.08 E-value=0.38 Score=45.18 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=31.2
Q ss_pred CEEEEEcCCHHHHHHHHHHc-cCCCEEEEEcCCCC
Q 044056 144 KTVFISGFGNIGVELAKRLR-PFGVKIIAAKRSWA 177 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~ 177 (189)
++|+|||.|.+|..+|..+. .-|++|..||++..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 78999999999999999988 77999999998754
No 217
>PLN02827 Alcohol dehydrogenase-like
Probab=90.06 E-value=0.52 Score=40.56 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
-.|.+|.|+|.|.||...++.++++|++ |++.+++.
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~ 228 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP 228 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 3589999999999999999999999995 88877543
No 218
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=90.04 E-value=0.52 Score=38.55 Aligned_cols=36 Identities=33% Similarity=0.400 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
-.|.+|.|.|.|.+|+++++.+++.|++ |++.++..
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~ 164 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRP 164 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 3589999999999999999999999999 88877654
No 219
>PRK14851 hypothetical protein; Provisional
Probab=89.97 E-value=0.37 Score=45.04 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=33.4
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS 175 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 175 (189)
.+..|++++|+|+|+|.+|..+|..|...|. ++..+|..
T Consensus 37 ~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 37 EQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 3568899999999999999999999998887 57777753
No 220
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=89.80 E-value=0.58 Score=40.60 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=36.4
Q ss_pred CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.......+++|.|.|- |.||+.+++.|..-|.+|++.+|...
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 3456778899999985 99999999999988999999998764
No 221
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.72 E-value=0.54 Score=41.26 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..+.|+++.|.|- |.||+++|+.+...|++|+..++..
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~ 244 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA 244 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4567999999997 9999999999999999999998753
No 222
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.57 E-value=0.62 Score=41.46 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
-.+++|.|||-|.+|-..|..|+..|.+|..|++...
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4789999999999999999999999999999987653
No 223
>PLN02602 lactate dehydrogenase
Probab=89.49 E-value=0.52 Score=40.55 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=30.8
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCC--EEEEEcCCCCCccc
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGV--KIIAAKRSWASHSQ 181 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~~~ 181 (189)
++|+|||.|+||..+|-.+...|. ++..+|.......+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g 77 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRG 77 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhH
Confidence 699999999999999998875454 79999987654443
No 224
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=89.37 E-value=0.54 Score=38.69 Aligned_cols=56 Identities=25% Similarity=0.368 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccC----CC-------EEEEEcCCC
Q 044056 117 SCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPF----GV-------KIIAAKRSW 176 (189)
Q Consensus 117 ~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~af----G~-------~V~~~~r~~ 176 (189)
-+|=-+++.+|+..|- .+..|.+.++.|+|.|..|-.+|+.+... |+ +++.+|+.+
T Consensus 3 GTaaV~lAgll~Al~~----~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G 69 (255)
T PF03949_consen 3 GTAAVVLAGLLNALRV----TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG 69 (255)
T ss_dssp HHHHHHHHHHHHHHHH----HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred hhHHHHHHHHHHHHHH----hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence 3566788999999985 67889999999999999999999999877 88 488888863
No 225
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.34 E-value=0.61 Score=39.01 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCEEEEEcC-CHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056 143 GKTVFISGF-GNIGVELAKRLRPFGV-KIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~-G~IG~~vA~~l~afG~-~V~~~~r~~~ 177 (189)
|++|.|.|. |.+|+.+.+.++++|+ +|++.+++..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~ 191 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDE 191 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence 489999998 9999999999999999 7999877643
No 226
>PRK07340 ornithine cyclodeaminase; Validated
Probab=89.34 E-value=0.71 Score=38.81 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHc-cCCC-EEEEEcCCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLR-PFGV-KIIAAKRSWAS 178 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~ 178 (189)
...++++|+|.|.+|+..++.+. .++. +|..|+|+..+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~ 162 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS 162 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH
Confidence 35789999999999999999986 4775 69999998643
No 227
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.29 E-value=0.68 Score=40.56 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=31.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+++|.|||-|.+|-++|..++.+|.+|..+.+...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 57999999999999999999999999999987643
No 228
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.23 E-value=0.65 Score=38.40 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=31.7
Q ss_pred CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|.+|.|.| .|.+|+.+++.++++|++|++.+++.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~ 178 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD 178 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 589999999 69999999999999999999887654
No 229
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.23 E-value=0.61 Score=43.19 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=34.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..+++|.|||-|..|...|..|...|.+|..|++...
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4699999999999999999999999999999997754
No 230
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=89.17 E-value=0.68 Score=39.57 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
..|.+|.|.|.|.+|+.+++.++++|. +|++.++..
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~ 211 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVP 211 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 358999999999999999999999997 798887653
No 231
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.07 E-value=0.66 Score=41.85 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=32.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
....++|-|||.|--|-+.|+-|+.||++|+.+.-+.+
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR 49 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR 49 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence 34568999999999999999999999999998875543
No 232
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=89.03 E-value=0.72 Score=38.82 Aligned_cols=36 Identities=33% Similarity=0.419 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
-.|++|.|.|.|.+|+.+++.++++|+ +|++.+++.
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~ 207 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSE 207 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 358999999999999999999999999 788887654
No 233
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=88.96 E-value=0.83 Score=38.18 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=36.4
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS 178 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 178 (189)
.....|+++.|+|.|..+++++.-|...|+ +|..++|+...
T Consensus 121 ~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~r 162 (283)
T COG0169 121 PVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRER 162 (283)
T ss_pred CcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 356689999999999999999999999996 79999997654
No 234
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.89 E-value=0.55 Score=41.00 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCC----------HHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056 141 LLGKTVFISGFG----------NIGVELAKRLRPFGVKIIAAKRSWASH 179 (189)
Q Consensus 141 l~gktvGIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~ 179 (189)
|.||||||+|+- .-...++++|+..|++|.+|||-..+.
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~ 356 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMEN 356 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHH
Confidence 999999999984 567889999999999999999976543
No 235
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=88.79 E-value=0.73 Score=39.49 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
.-.|.+|.|.|.|.+|..+++.+++.|. +|++.+++.
T Consensus 188 ~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~ 225 (373)
T cd08299 188 VTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINK 225 (373)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 3448899999999999999999999999 799988754
No 236
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=88.74 E-value=0.94 Score=34.64 Aligned_cols=40 Identities=30% Similarity=0.336 Sum_probs=31.4
Q ss_pred CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCC
Q 044056 137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...++.||++.|||-+. +|+.+|.+|..-|+.|...+.+.
T Consensus 30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T 70 (160)
T PF02882_consen 30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT 70 (160)
T ss_dssp TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS
T ss_pred cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC
Confidence 45689999999999996 99999999999999999887664
No 237
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=88.73 E-value=0.83 Score=42.66 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
...+.+|++.|.|- |.||+++|++|..-|++|+..+++..
T Consensus 409 ~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~ 449 (676)
T TIGR02632 409 EKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLE 449 (676)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45788999999986 89999999999999999999998753
No 238
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=88.67 E-value=0.68 Score=43.01 Aligned_cols=37 Identities=27% Similarity=0.202 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
-.+++|.|||.|..|...|..|...|.+|..+++...
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4689999999999999999999999999999998654
No 239
>PRK06128 oxidoreductase; Provisional
Probab=88.64 E-value=0.7 Score=38.21 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056 140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
.+.||++.|.|- |.||+++|+.+..-|++|+...+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 578999999985 899999999999999999876654
No 240
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.58 E-value=0.71 Score=38.50 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..++.-++.++=. .+.++.|+++.|+|.+ ..|+.+|.++..+|++|....++.+
T Consensus 133 PcTp~av~~ll~~--------~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~ 187 (279)
T PRK14178 133 PCTPNGIMTLLHE--------YKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE 187 (279)
T ss_pred CCCHHHHHHHHHH--------cCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChh
Confidence 4455555544432 4668999999999999 9999999999999999888776543
No 241
>PLN02427 UDP-apiose/xylose synthase
Probab=88.52 E-value=0.84 Score=39.19 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=34.0
Q ss_pred CCCCCCCCEEEEEc-CCHHHHHHHHHHccC-CCEEEEEcCCC
Q 044056 137 TGETLLGKTVFISG-FGNIGVELAKRLRPF-GVKIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~af-G~~V~~~~r~~ 176 (189)
.+..+..++|.|.| .|-||+.+++.|..- |.+|++++++.
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~ 49 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN 49 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence 45667778999999 699999999999876 58999999764
No 242
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=88.52 E-value=0.85 Score=39.97 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=34.3
Q ss_pred CCCCCCEEEEEcC-----------------CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 139 ETLLGKTVFISGF-----------------GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 139 ~~l~gktvGIvG~-----------------G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.++.||++.|-|- |.+|.++|+.+...|++|+++++..
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence 4689999999987 8899999999999999999998764
No 243
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=88.36 E-value=1.6 Score=38.47 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=35.4
Q ss_pred CCCCCCCEEEEEcC----------CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 138 GETLLGKTVFISGF----------GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+..+.|++|+|+|+ ..=+..+++.|..-|.+|.+|||...
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~ 358 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVD 358 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCC
Confidence 45689999999999 56789999999999999999999843
No 244
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=88.25 E-value=0.89 Score=40.29 Aligned_cols=42 Identities=33% Similarity=0.513 Sum_probs=37.7
Q ss_pred CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
....+++||+|+|||.|+-|-.++.-|..-|.+|..+-|++.
T Consensus 168 ~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 168 PNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 345699999999999999999999999999999999988764
No 245
>PRK08618 ornithine cyclodeaminase; Validated
Probab=88.20 E-value=0.6 Score=39.57 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHH-ccCCC-EEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRL-RPFGV-KIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l-~afG~-~V~~~~r~~~~ 178 (189)
..++++|+|.|.+|+..++.+ ...+. +|..|+|++..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~ 164 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEK 164 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHH
Confidence 478999999999999988776 45676 59999998554
No 246
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=88.07 E-value=0.89 Score=37.99 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=31.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056 142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
.|.+|.|.|. |.+|+.+++.+++.|++|++.++.
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~ 211 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA 211 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc
Confidence 5899999999 999999999999999999887654
No 247
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=88.06 E-value=0.83 Score=40.60 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=32.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+++|.|||-|.+|-++|..++.+|.+|..+++...
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 58999999999999999999999999999987643
No 248
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=87.92 E-value=1.6 Score=38.11 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=35.0
Q ss_pred CCCCCEEEEEcC----------CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 140 TLLGKTVFISGF----------GNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 140 ~l~gktvGIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
.+.+++|+|+|+ ..-...+++.|...|++|.+|||...+
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~ 358 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPE 358 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCCh
Confidence 689999999998 567889999999999999999998654
No 249
>PLN02572 UDP-sulfoquinovose synthase
Probab=87.91 E-value=0.99 Score=39.89 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=34.8
Q ss_pred CCCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 136 PTGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 136 ~~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
.....+.+++|.|.| .|-||+.+++.|..-|.+|+++|+.
T Consensus 40 ~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~ 80 (442)
T PLN02572 40 GSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNL 80 (442)
T ss_pred CCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence 345678899999998 5999999999999999999998753
No 250
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.86 E-value=0.92 Score=38.17 Aligned_cols=36 Identities=33% Similarity=0.379 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
-.|++|.|.|.|.||+.+++.++..|.+ |+..++..
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~ 201 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRP 201 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 3589999999999999999999999995 88887653
No 251
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=87.84 E-value=3.4 Score=34.97 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=50.3
Q ss_pred HHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCC-CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEc
Q 044056 96 ALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGE-TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 96 ~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~-~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~ 173 (189)
.+....|+|.|.-+....-.+++++ ++.+.++ .+. .+.|++|+++|- +++.+..+..+..|||+|....
T Consensus 114 ~a~~~~vPVINag~~~~HPtQaL~D-----l~Ti~e~----~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~ 184 (311)
T PRK14804 114 MKNGSQVPVINGCDNMFHPCQSLAD-----IMTIALD----SPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVT 184 (311)
T ss_pred HHHHCCCCEEECCCCCCChHHHHHH-----HHHHHHH----hCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEC
Confidence 3444679999986542112234444 2222232 232 589999999997 7899999999999999999999
Q ss_pred CCC
Q 044056 174 RSW 176 (189)
Q Consensus 174 r~~ 176 (189)
|..
T Consensus 185 P~~ 187 (311)
T PRK14804 185 PIA 187 (311)
T ss_pred CCC
Confidence 865
No 252
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=87.76 E-value=0.8 Score=37.88 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=30.9
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r 174 (189)
-.|.+|.|+|. |.+|+.+++.+++.|.+|++.++
T Consensus 161 ~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~ 195 (325)
T cd08264 161 GPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR 195 (325)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH
Confidence 45899999998 99999999999999999988764
No 253
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=87.63 E-value=0.63 Score=38.78 Aligned_cols=36 Identities=33% Similarity=0.435 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~ 176 (189)
..|++|.|.|-|.+|+.+++.++..| .+|+..+++.
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~ 202 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSE 202 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 34899999999999999999999999 8999887754
No 254
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.54 E-value=0.95 Score=40.24 Aligned_cols=38 Identities=29% Similarity=0.348 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.-.+++|.|||-|..|-..|..|...|.+|..+++...
T Consensus 140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~ 177 (471)
T PRK12810 140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR 177 (471)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 34689999999999999999999999999999998643
No 255
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=87.49 E-value=0.57 Score=38.84 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=32.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWAS 178 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~ 178 (189)
++++.|+|.|..+++++-.|...|++ |..++|+.++
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~ 158 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKT 158 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence 57999999999999999999999985 9999998643
No 256
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=87.40 E-value=0.76 Score=37.95 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCCC-EEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGK-TVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gk-tvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..|. +|.|.|. |.+|+.+++.++++|++|++..++.
T Consensus 143 ~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~ 180 (323)
T TIGR02823 143 TPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKA 180 (323)
T ss_pred CCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3466 9999998 9999999999999999998876544
No 257
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=87.37 E-value=1 Score=39.86 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
...+++|.|||-|..|-+.|..|...|.+|..+++...
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK 167 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 45689999999999999999999999999999998643
No 258
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=87.35 E-value=0.8 Score=37.67 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=31.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.+.+|.|.|. |.+|+.+++.+++.|++|+..+++.
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (325)
T cd05280 146 EDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKE 181 (325)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3579999998 9999999999999999999888764
No 259
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=87.34 E-value=0.57 Score=40.16 Aligned_cols=44 Identities=25% Similarity=0.361 Sum_probs=37.4
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCcc
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASHS 180 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~~ 180 (189)
...--.|.|+.|+|+|.+|-+..+.++.-|+ +|++.|..+.+.+
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~ 224 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLE 224 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHH
Confidence 3455569999999999999999999999998 5999998766543
No 260
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=87.31 E-value=0.96 Score=39.83 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=32.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+++|.|||-|.||-++|..+..+|.+|..+++...
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 209 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDR 209 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 68999999999999999999999999999988654
No 261
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=87.29 E-value=0.73 Score=37.60 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=32.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|.++.|.|. |.+|+.+++.++++|++|++.+++.
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~ 167 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSP 167 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4899999999 9999999999999999999988754
No 262
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=87.28 E-value=1 Score=38.96 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++|.|||-|.+|-++|..|+.+|.+|..+.+...
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 368999999999999999999999999998887553
No 263
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=87.24 E-value=0.77 Score=38.94 Aligned_cols=37 Identities=19% Similarity=-0.019 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHc-cCCC-EEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLR-PFGV-KIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~ 178 (189)
..++++|+|.|..|+..++.+. .++. +|..|+|+..+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~ 166 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK 166 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH
Confidence 4589999999999999999996 5785 59999998654
No 264
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=87.19 E-value=1.1 Score=37.18 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...|.++.|.|.|.+|+.+++.+++.|.+|++.+++.
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~ 201 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSG 201 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 3457899999999999999999999999999887654
No 265
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=87.15 E-value=0.99 Score=39.67 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=32.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
++++.|||-|.||-++|..++.+|.+|..+.+...
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 58999999999999999999999999999987653
No 266
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=87.13 E-value=0.76 Score=37.85 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|.+|.|.|. |.+|+++++.++++|++|+...++.
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~ 174 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD 174 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH
Confidence 5799999986 9999999999999999998886654
No 267
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=87.11 E-value=1.1 Score=39.73 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...|++|.|||-|.+|-.+|+.+..+|.+|..+.+..
T Consensus 269 ~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 269 VYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3468999999999999999999999999988877653
No 268
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=87.11 E-value=3.5 Score=35.26 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=49.6
Q ss_pred hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEEE
Q 044056 95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIAA 172 (189)
Q Consensus 95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~~ 172 (189)
+.+...+|+|.|.-+. +..++--++ =++.+.++ .+..+.|++|++||=+ ++.+..+..+..|||+|...
T Consensus 117 ~~a~~~~vPVINa~~~---~~HPtQaL~--Dl~Ti~e~----~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~ 187 (334)
T PRK01713 117 ELAEYAGVPVFNGLTD---EFHPTQMLA--DVLTMIEN----CDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRIC 187 (334)
T ss_pred HHHHhCCCCEEECCCC---CCChHHHHH--HHHHHHHH----cCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEE
Confidence 3445568999998554 333332222 22223232 2335889999999986 67888889999999999999
Q ss_pred cCCC
Q 044056 173 KRSW 176 (189)
Q Consensus 173 ~r~~ 176 (189)
.|..
T Consensus 188 ~P~~ 191 (334)
T PRK01713 188 APKA 191 (334)
T ss_pred CCch
Confidence 8753
No 269
>PRK14852 hypothetical protein; Provisional
Probab=87.07 E-value=0.67 Score=44.91 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=32.8
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS 175 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 175 (189)
+..|++++|+|+|+|.+|..+|+.|...|. ++...|..
T Consensus 327 Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D 365 (989)
T PRK14852 327 QRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD 365 (989)
T ss_pred HHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 468999999999999999999999998887 47666653
No 270
>PRK06116 glutathione reductase; Validated
Probab=87.04 E-value=1 Score=39.56 Aligned_cols=35 Identities=34% Similarity=0.313 Sum_probs=32.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+++|.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 58999999999999999999999999999987654
No 271
>PRK06484 short chain dehydrogenase; Validated
Probab=87.00 E-value=1.7 Score=38.76 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=33.3
Q ss_pred CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~ 304 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAE 304 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45789999997 678999999999999999999998643
No 272
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=86.95 E-value=1.1 Score=37.28 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=31.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS 175 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 175 (189)
...|++|.|.|.|.+|+.+++.++.+|+ +|++.++.
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~ 201 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPV 201 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCC
Confidence 3468999999999999999999999997 78887544
No 273
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.92 E-value=1.1 Score=38.02 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
-.|++|.|.|.|.+|+.+++.++++|. +|++.+++.
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~ 221 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVD 221 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 358999999999999999999999999 588887654
No 274
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=86.92 E-value=1.1 Score=37.05 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=32.1
Q ss_pred CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.|.+|.|.| .|.+|+.+++.++..|.+|++.+++.
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~ 180 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSD 180 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3579999999 69999999999999999999988654
No 275
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=86.88 E-value=1.1 Score=38.51 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=31.9
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.|.+|.|.|. |.||+.+++.++++|+++++.+++.
T Consensus 192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~ 228 (393)
T cd08246 192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSE 228 (393)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 45789999997 9999999999999999988887653
No 276
>PTZ00058 glutathione reductase; Provisional
Probab=86.87 E-value=0.91 Score=41.53 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=31.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
+++|.|||-|.||-++|..+..+|.+|..+.+..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 6899999999999999999999999999998764
No 277
>PRK13984 putative oxidoreductase; Provisional
Probab=86.86 E-value=1.1 Score=41.15 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
-.+++|.|||.|..|...|..|+..|.+|..+++...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4689999999999999999999999999999987653
No 278
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=86.85 E-value=0.74 Score=38.41 Aligned_cols=36 Identities=33% Similarity=0.483 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA 177 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 177 (189)
.|.+|.|.|.|.+|+.+++.++.+|. +|++.+++..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~ 201 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADA 201 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence 68999999999999999999999999 7888877543
No 279
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=86.82 E-value=5.2 Score=36.56 Aligned_cols=92 Identities=11% Similarity=0.059 Sum_probs=66.9
Q ss_pred hcCCCCeEEEEcCCCCCc-CChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC
Q 044056 74 TRANPMNLIIRFRVGLEG-VDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG 152 (189)
Q Consensus 74 ~~~p~Lk~I~~~~aG~d~-id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G 152 (189)
..+|+. +|+.==-+..+ +.+-.-.+..|++.|.-= +.+|--+++.+|+..|- .+..|.+.++.|+|.|
T Consensus 238 ~~~P~~-~Iq~EDf~~~naf~iL~kyr~~i~~FnDDi------QGTaaV~lAgll~Alr~----~g~~l~d~riv~~GAG 306 (559)
T PTZ00317 238 SRWPNA-VVQFEDFSNNHCFDLLERYQNKYRCFNDDI------QGTGAVIAAGFLNALKL----SGVPPEEQRIVFFGAG 306 (559)
T ss_pred HhCCCe-EEehhhcCCccHHHHHHHhccCCCEecccc------hhHHHHHHHHHHHHHHH----hCCChhhcEEEEECCC
Confidence 445663 66554444444 222222334588887522 56788999999999994 6788999999999999
Q ss_pred HHHHHHHHHHcc----CCC-------EEEEEcCCC
Q 044056 153 NIGVELAKRLRP----FGV-------KIIAAKRSW 176 (189)
Q Consensus 153 ~IG~~vA~~l~a----fG~-------~V~~~~r~~ 176 (189)
.-|-.+|+.+.. -|. +++.+|+.+
T Consensus 307 sAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G 341 (559)
T PTZ00317 307 SAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG 341 (559)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 999999998863 577 788888764
No 280
>PLN02852 ferredoxin-NADP+ reductase
Probab=86.80 E-value=1.4 Score=39.60 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=36.3
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHcc--CCCEEEEEcCCCCCcc
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRP--FGVKIIAAKRSWASHS 180 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~a--fG~~V~~~~r~~~~~~ 180 (189)
.....+++|.|||-|.-|-..|..|.. .|.+|..|++.+.+..
T Consensus 21 ~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 21 SSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 344568999999999999999999964 8999999999876543
No 281
>PRK12831 putative oxidoreductase; Provisional
Probab=86.74 E-value=1.1 Score=39.85 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...|++|.|||-|.+|-.+|+.+..+|.+|....|..
T Consensus 278 ~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 278 IKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred ccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3568999999999999999999999999988776643
No 282
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.73 E-value=1.3 Score=37.11 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=42.5
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCC
Q 044056 115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...++.-++.++=. .+.++.||++.|||-| -+|+.+|.+|..-|++|.......
T Consensus 137 ~PcTp~avi~lL~~--------~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t 191 (285)
T PRK14191 137 VPATPMGVMRLLKH--------YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT 191 (285)
T ss_pred CCCcHHHHHHHHHH--------hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc
Confidence 34556655555432 4668999999999999 999999999999999998876543
No 283
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=86.72 E-value=1.2 Score=40.38 Aligned_cols=41 Identities=29% Similarity=0.403 Sum_probs=34.1
Q ss_pred CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.......||+|.|||.|+-|..||.-+....-+|+...|++
T Consensus 176 r~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 176 RDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp -TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred cChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 34567899999999999999999999998888888777764
No 284
>PRK12831 putative oxidoreductase; Provisional
Probab=86.68 E-value=1.2 Score=39.64 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.-.++.|.|||-|..|-..|..|+..|.+|..+++..
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4578999999999999999999999999999998754
No 285
>PTZ00188 adrenodoxin reductase; Provisional
Probab=86.67 E-value=2 Score=38.83 Aligned_cols=45 Identities=18% Similarity=0.022 Sum_probs=36.7
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHH-ccCCCEEEEEcCCCCCcccc
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRL-RPFGVKIIAAKRSWASHSQV 182 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~~~~ 182 (189)
......++|.|||-|.-|-..|+.+ +..|.+|..|++.+.+-..+
T Consensus 34 ~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLv 79 (506)
T PTZ00188 34 TNEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLI 79 (506)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEE
Confidence 3445689999999999999999964 56799999999988775433
No 286
>PRK06370 mercuric reductase; Validated
Probab=86.66 E-value=1.1 Score=39.62 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=32.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+++|.|||-|.+|-++|..++.+|.+|..+++...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 68999999999999999999999999999987654
No 287
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=86.62 E-value=1.3 Score=28.62 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=27.3
Q ss_pred EEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 148 ISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 148 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
|||-|--|-..|..|+.-|.+|..+++....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999889999999987544
No 288
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=86.59 E-value=1.1 Score=36.30 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=32.3
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..|.+|.|.|. |.+|+.+++.++..|++|+..+++.
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~ 174 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSE 174 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCH
Confidence 35799999998 9999999999999999999887754
No 289
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.54 E-value=1.3 Score=37.17 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS 175 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 175 (189)
-.|.+|.|.|.|.+|+.+++.++++|+ +|++.+++
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~ 197 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPN 197 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 368999999999999999999999999 68887544
No 290
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=86.49 E-value=1.3 Score=37.00 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
..|++|.|.|.|.+|+.+++.++.+|++|+...++
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s 192 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDID 192 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCC
Confidence 45889999999999999999999999999888665
No 291
>PRK07846 mycothione reductase; Reviewed
Probab=86.48 E-value=1.2 Score=39.48 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=32.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 58999999999999999999999999999988654
No 292
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=86.47 E-value=1.2 Score=37.81 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
.+++|.|||-|..|-+.|..|...|.+|..+++.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4789999999999999999999999999999987544
No 293
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=86.43 E-value=1.1 Score=39.46 Aligned_cols=36 Identities=36% Similarity=0.501 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.++++.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 358999999999999999999999999999987654
No 294
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=86.41 E-value=1.3 Score=35.82 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=32.3
Q ss_pred CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...|++|.|.| .|.+|+.+++.++++|.+|+..+++.
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~ 171 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSE 171 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 34579999999 69999999999999999999887653
No 295
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.40 E-value=1.3 Score=39.04 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=31.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++.|||-|.+|-++|..++.+|.+|..+.+...
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 48999999999999999999999999999987654
No 296
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.35 E-value=1.4 Score=39.18 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=31.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+++|.|||-|.||-++|..+..+|.+|..+.+...
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 68999999999999999999999999998877554
No 297
>PLN02206 UDP-glucuronate decarboxylase
Probab=86.32 E-value=1.3 Score=39.18 Aligned_cols=39 Identities=28% Similarity=0.389 Sum_probs=33.7
Q ss_pred CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
.+..-.+++|.|.| .|-||+.+++.|..-|.+|++.++.
T Consensus 113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~ 152 (442)
T PLN02206 113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNF 152 (442)
T ss_pred cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCC
Confidence 44455679999999 6999999999999999999999864
No 298
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=86.30 E-value=1.3 Score=37.13 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~ 176 (189)
.-.|.+|.|.|.|.+|+.++++++.+| .+|+++++..
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~ 201 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDD 201 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 345899999999999999999999999 7888887643
No 299
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=86.20 E-value=1.2 Score=39.25 Aligned_cols=35 Identities=37% Similarity=0.360 Sum_probs=31.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 58999999999999999999999999999887654
No 300
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.20 E-value=1.3 Score=36.11 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.1
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.|.+|.|.|. |.+|+.+++.+++.|++|+...++.
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~ 177 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSP 177 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45799999997 9999999999999999999887654
No 301
>PRK07877 hypothetical protein; Provisional
Probab=86.16 E-value=0.74 Score=43.36 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=36.4
Q ss_pred HHHhcCC---CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC--EEEEEcCC
Q 044056 128 GLLRKHI---VPTGETLLGKTVFISGFGNIGVELAKRLRPFGV--KIIAAKRS 175 (189)
Q Consensus 128 ~~~R~~~---~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~--~V~~~~r~ 175 (189)
.+.|+.. ...+..|++++|+|+|+| +|..+|..|..-|. ++..+|.-
T Consensus 89 r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D 140 (722)
T PRK07877 89 RLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFD 140 (722)
T ss_pred HhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCC
Confidence 3345544 234568999999999999 99999999998884 78877754
No 302
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=86.12 E-value=1 Score=37.22 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=35.7
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCc
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASH 179 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~ 179 (189)
.+..|...+|.|+|+|.+|.++|+.|..-|. ++..+|...-+.
T Consensus 20 gQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~ 63 (287)
T PTZ00245 20 TQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTD 63 (287)
T ss_pred HHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccch
Confidence 3567889999999999999999999998888 477777654433
No 303
>PRK10083 putative oxidoreductase; Provisional
Probab=86.01 E-value=1.3 Score=36.99 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHcc-CCCE-EEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRP-FGVK-IIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~a-fG~~-V~~~~r~~ 176 (189)
-.|.+|.|.|.|.+|+.+++.+++ +|++ |+..+++.
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~ 196 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRID 196 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence 458899999999999999999996 7996 66676643
No 304
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=86.00 E-value=1.1 Score=39.50 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=32.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 58999999999999999999999999999987654
No 305
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=85.99 E-value=5.4 Score=34.16 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=58.4
Q ss_pred HHHHhcCCCCeEEEEcCCCCC------cCC-hhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCC-
Q 044056 70 SNVITRANPMNLIIRFRVGLE------GVD-IDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETL- 141 (189)
Q Consensus 70 ~~~l~~~p~Lk~I~~~~aG~d------~id-~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l- 141 (189)
...++++..+=++=....|.+ +-. ...+...+++|.|..+. ..-.++.|+ ++.+.++ .+ .+
T Consensus 99 arvls~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVINa~~~-~HPtQaLaD-----l~Ti~e~----~g-~~~ 167 (335)
T PRK04523 99 ARVLSRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETI-THPCQELAH-----ALALQEH----FG-TTL 167 (335)
T ss_pred HHHHHHhCcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEECCCC-CChHHHHHH-----HHHHHHH----hC-Ccc
Confidence 345666655544433445554 111 23344467999998553 212334444 3333343 22 36
Q ss_pred CCCEEEEEcCC-------HHHHHHHHHHccCCCEEEEEcC
Q 044056 142 LGKTVFISGFG-------NIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 142 ~gktvGIvG~G-------~IG~~vA~~l~afG~~V~~~~r 174 (189)
.|++|+|++.| ++.+..+..+..|||+|....|
T Consensus 168 ~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P 207 (335)
T PRK04523 168 RGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCP 207 (335)
T ss_pred CCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECC
Confidence 79999887654 7888999999999999999998
No 306
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=85.93 E-value=1.3 Score=39.16 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=32.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.++|.|||-|.+|-++|..++.+|.+|..+++...
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 58999999999999999999999999999987654
No 307
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=85.93 E-value=2.3 Score=38.90 Aligned_cols=151 Identities=20% Similarity=0.169 Sum_probs=90.5
Q ss_pred CCCcceEEEeCCCCCCchhHHHHHhhcccCceeee-Cch--h-HHhhcCCCeEEecCCCCCHHHHhcCC-CCeEEEEcCC
Q 044056 13 DKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLC-FFL--S-MHSLYASYGTSEQMIASDSNVITRAN-PMNLIIRFRV 87 (189)
Q Consensus 13 ~~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~--~-~~~~~~~advi~~~~~~~~~~l~~~p-~Lk~I~~~~a 87 (189)
.....++++++.-.. ...++++ +...++..... .++ . .-..+.+.- +.+... -.+++++.. ..-+|+-.++
T Consensus 113 ~~~~~r~lIiGAG~a-g~~l~r~-~~~~~~~~pV~fiDdd~~~~g~~i~Gv~-V~g~~~-i~~~v~~~~~~~iiiAips~ 188 (588)
T COG1086 113 KDNRIRLLIIGAGSA-GDLLLRA-LRRDPEYTPVAFLDDDPDLTGMKIRGVP-VLGRIE-IERVVEELGIQLILIAIPSA 188 (588)
T ss_pred ccCCCceEEEcCchH-HHHHHHH-HHhCCCcceEEEECCChhhcCCEEecee-eechhH-HHHHHHHcCCceEEEecCCC
Confidence 344688899887533 3323333 33334432222 122 1 111222211 344334 455667663 4446666666
Q ss_pred CCCc---CChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEc
Q 044056 88 GLEG---VDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISG 150 (189)
Q Consensus 88 G~d~---id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG 150 (189)
.-+. + +..+.+.|+.|--.|.. ..+.+ ...-.|++. ......+.||||.|-|
T Consensus 189 ~~~~~~~i-~~~l~~~~~~v~~lP~~-----~~l~~-----~~~~lreI~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTG 257 (588)
T COG1086 189 SQEERRRI-LLRLARTGIAVRILPQL-----TDLKD-----LNGQLREIEIEDLLGRPPVALDTELIGAMLTGKTVLVTG 257 (588)
T ss_pred CHHHHHHH-HHHHHhcCCcEEecCcH-----HHHHH-----hccccccCCHHHHhCCCCCCCCHHHHHhHcCCCEEEEeC
Confidence 5443 3 67788899999988875 33444 333356665 1234578999999996
Q ss_pred -CCHHHHHHHHHHccCCCE-EEEEcCCCCC
Q 044056 151 -FGNIGVELAKRLRPFGVK-IIAAKRSWAS 178 (189)
Q Consensus 151 -~G~IG~~vA~~l~afG~~-V~~~~r~~~~ 178 (189)
.|.||+++.+.+-.++.+ ++.++++...
T Consensus 258 agGSiGsel~~qil~~~p~~i~l~~~~E~~ 287 (588)
T COG1086 258 GGGSIGSELCRQILKFNPKEIILFSRDEYK 287 (588)
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCchHH
Confidence 579999999999999985 8888887554
No 308
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=85.90 E-value=4.3 Score=34.67 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=50.1
Q ss_pred hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEEE
Q 044056 95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIAA 172 (189)
Q Consensus 95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~~ 172 (189)
..+....|+|.|.-+. +..++--++ =++.+.+++ ...+.|++|++||=+ ++.+..+..+..||++|...
T Consensus 116 ~~a~~s~vPVINa~~~---~~HPtQaL~--Dl~Ti~e~~----~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~ 186 (332)
T PRK04284 116 TLAEYSGVPVWNGLTD---EDHPTQVLA--DFLTAKEHL----KKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLV 186 (332)
T ss_pred HHHHhCCCCEEECCCC---CCChHHHHH--HHHHHHHHh----cCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEE
Confidence 3344567999997553 434433222 233333431 125889999999975 88999999999999999999
Q ss_pred cCCC
Q 044056 173 KRSW 176 (189)
Q Consensus 173 ~r~~ 176 (189)
.|..
T Consensus 187 ~P~~ 190 (332)
T PRK04284 187 CPKE 190 (332)
T ss_pred CCcc
Confidence 8863
No 309
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=85.87 E-value=1.3 Score=39.05 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.-.+++|.|||-|..|.+.|..|...|.+|..+++...
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~ 174 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 35679999999999999999999999999999998653
No 310
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.85 E-value=1.3 Score=37.05 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
-.|.+|.|.|-|.+|+.+++.+++.|.+ |+..+++.
T Consensus 167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~ 203 (345)
T cd08287 167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHE 203 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4589999999999999999999999996 77777653
No 311
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=85.78 E-value=0.78 Score=38.43 Aligned_cols=48 Identities=29% Similarity=0.361 Sum_probs=35.3
Q ss_pred HHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcC
Q 044056 127 LGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKR 174 (189)
Q Consensus 127 L~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r 174 (189)
+++.|.-....-..++.++|.|||.|.+|+-.|.+|..-|. +.+.||-
T Consensus 66 MALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDY 114 (422)
T KOG2336|consen 66 MALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDY 114 (422)
T ss_pred HHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeec
Confidence 34444322222346788999999999999999999998886 6777764
No 312
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=85.78 E-value=0.83 Score=38.09 Aligned_cols=39 Identities=31% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056 136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r 174 (189)
..+.+|+..|++|+|+ |.||..+|+-+.+-+++....-|
T Consensus 160 ~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r 199 (351)
T COG5322 160 QLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLR 199 (351)
T ss_pred HhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecc
Confidence 4789999999999996 99999999999999988766553
No 313
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=85.66 E-value=1.3 Score=36.44 Aligned_cols=36 Identities=31% Similarity=0.575 Sum_probs=32.1
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.+.++.|.|- |.+|+++++.+++.|.+|+...++.
T Consensus 161 ~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~ 197 (332)
T cd08259 161 KKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP 197 (332)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 45789999996 9999999999999999999988754
No 314
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=85.56 E-value=1.4 Score=37.97 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=31.9
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.|.+|.|.|. |.+|+.+++.++++|++|++.+++.
T Consensus 188 ~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~ 224 (398)
T TIGR01751 188 KPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSP 224 (398)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 45799999998 9999999999999999988877653
No 315
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=85.43 E-value=6.7 Score=33.91 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=44.6
Q ss_pred CeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--------HHHHHHHHHHccCCCEEEEE
Q 044056 101 AIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--------NIGVELAKRLRPFGVKIIAA 172 (189)
Q Consensus 101 gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--------~IG~~vA~~l~afG~~V~~~ 172 (189)
.|||.|.-+. ...++--+ +=++.+..++. ....|.|++|.|+|.| ++.+..+..+..|||+|...
T Consensus 135 ~vPVINa~~~---~~HPtQaL--aDl~Ti~e~~G--~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~ 207 (357)
T TIGR03316 135 RPPLVNLQCD---IDHPTQAM--ADIMTLQEKFG--GIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLA 207 (357)
T ss_pred CCCEEECCCC---CCCchHHH--HHHHHHHHHhC--CccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEE
Confidence 6999998664 33333222 22333333321 1124889999999853 44567788889999999999
Q ss_pred cCCC
Q 044056 173 KRSW 176 (189)
Q Consensus 173 ~r~~ 176 (189)
.|..
T Consensus 208 ~P~~ 211 (357)
T TIGR03316 208 HPEG 211 (357)
T ss_pred CCCc
Confidence 9864
No 316
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=85.37 E-value=0.96 Score=37.57 Aligned_cols=36 Identities=31% Similarity=0.549 Sum_probs=32.4
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.+.+|.|.|. |.+|+.+++.+++.|++|++.+++.
T Consensus 161 ~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~ 197 (334)
T PRK13771 161 KKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSE 197 (334)
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35789999999 9999999999999999999887754
No 317
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=85.35 E-value=1.5 Score=36.57 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=30.6
Q ss_pred CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
.|.+|.|.| .|.+|+.+++.++++|++|++..+.
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~ 196 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST 196 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc
Confidence 589999999 5999999999999999998887653
No 318
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=85.32 E-value=1.4 Score=37.97 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
-.|.+|.|+|.|.+|+.+++.+++.|. +|++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~ 219 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP 219 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence 358899999999999999999999998 599988764
No 319
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=85.32 E-value=1.6 Score=38.12 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEcC-----------------CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 139 ETLLGKTVFISGF-----------------GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 139 ~~l~gktvGIvG~-----------------G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.++.||++.|-|- |.+|.++|+.+...|++|+++.+..
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~ 235 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPV 235 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 4589999999987 5799999999999999999987654
No 320
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=85.32 E-value=1.6 Score=37.49 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
-.|.+|.|.|.|.+|+.+++.++++|. +|++.++..
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~ 238 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISE 238 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence 357899999999999999999999999 788887643
No 321
>PRK06046 alanine dehydrogenase; Validated
Probab=85.31 E-value=1.3 Score=37.54 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHc-cCCCE-EEEEcCCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLR-PFGVK-IIAAKRSWAS 178 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~-afG~~-V~~~~r~~~~ 178 (189)
-++|||+|+|.+|+..++.+. .++.+ |..|||+...
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~ 166 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSS 166 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHH
Confidence 479999999999999999886 56765 7779998643
No 322
>PLN00106 malate dehydrogenase
Probab=85.31 E-value=1.9 Score=36.76 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=29.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHcc--CCCEEEEEcCCC
Q 044056 142 LGKTVFISGF-GNIGVELAKRLRP--FGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~-G~IG~~vA~~l~a--fG~~V~~~~r~~ 176 (189)
..++|+|+|. |+||..+|-.|.- +.-++..+|...
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3479999999 9999999999974 444899999866
No 323
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=85.25 E-value=1.7 Score=42.40 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=34.2
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
....||+|.|||.|.-|-..|..|...|.+|..|+..
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 4468999999999999999999999999999999975
No 324
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=85.24 E-value=2.6 Score=38.62 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=56.1
Q ss_pred hCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHcc-----CCC------
Q 044056 99 NCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRP-----FGV------ 167 (189)
Q Consensus 99 ~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~a-----fG~------ 167 (189)
+..|++.|.-= +.+|--+++.+|+..|- .+..|.+.+|.|+|.|.-|-.+|+.+.. .|+
T Consensus 287 r~~i~~FnDDi------QGTaaV~lAgll~A~r~----~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~ 356 (581)
T PLN03129 287 RTTHLCFNDDI------QGTAAVALAGLLAALRA----TGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEAR 356 (581)
T ss_pred ccCCCEecccc------chHHHHHHHHHHHHHHH----hCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhc
Confidence 45788877522 56788899999999994 6789999999999999999999999876 466
Q ss_pred -EEEEEcCCC
Q 044056 168 -KIIAAKRSW 176 (189)
Q Consensus 168 -~V~~~~r~~ 176 (189)
+++.+|+.+
T Consensus 357 ~~i~~vD~~G 366 (581)
T PLN03129 357 KRIWLVDSKG 366 (581)
T ss_pred CcEEEEcCCC
Confidence 788888764
No 325
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=85.23 E-value=1.7 Score=38.60 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=31.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++.|||-|.||-++|..++.+|.+|..+.+...
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 211 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR 211 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 47999999999999999999999999999987553
No 326
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.22 E-value=1.4 Score=38.24 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEE-EcCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIA-AKRS 175 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~-~~r~ 175 (189)
-.|++|.|.|.|.||..+++.++.+|++++. .++.
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~ 219 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLN 219 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 3589999999999999999999999998544 4553
No 327
>PLN00016 RNA-binding protein; Provisional
Probab=85.20 E-value=1.1 Score=38.52 Aligned_cols=41 Identities=29% Similarity=0.315 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEE-----cCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 138 GETLLGKTVFIS-----GFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 138 ~~~l~gktvGIv-----G~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
......++|.|+ |.|.||+.+++.|..-|.+|++.+|....
T Consensus 47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred hcccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 345566899999 57999999999999889999999987643
No 328
>PRK07201 short chain dehydrogenase; Provisional
Probab=85.08 E-value=1.5 Score=40.30 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+.||++.|.|- |.||+++++.+..-|++|+..+|+..
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~ 406 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGE 406 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 678999999985 88999999999999999999998754
No 329
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=85.08 E-value=1.4 Score=36.56 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=31.6
Q ss_pred CCEEEEEc-CCHHHHHHHHHHccCC-CEEEEEcCCCC
Q 044056 143 GKTVFISG-FGNIGVELAKRLRPFG-VKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG-~G~IG~~vA~~l~afG-~~V~~~~r~~~ 177 (189)
|.+|.|.| .|.+|+.+++.+++.| ++|++.+++..
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~ 186 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPE 186 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChh
Confidence 78999999 5999999999999999 99999987643
No 330
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=85.00 E-value=1.6 Score=39.12 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.+++|.|||-|..|...|..|...|.+|..+++..
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 357899999999999999999999999999998764
No 331
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=84.97 E-value=1.6 Score=36.65 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS 175 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 175 (189)
.|.+|.|.|.|.+|.++++.++++|+ +|++.+++
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~ 209 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDID 209 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 68999999999999999999999999 67777654
No 332
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=84.93 E-value=1.7 Score=35.24 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=31.7
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..+.++.|.|. |.||+.+++.+++.|++|+..+++.
T Consensus 138 ~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~ 174 (323)
T cd05276 138 KAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSE 174 (323)
T ss_pred CCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCH
Confidence 35789999995 8999999999999999999887753
No 333
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=84.92 E-value=1.2 Score=36.48 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=31.9
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..|.+|.|.|. |.+|+++++.+++.|.+|++..++.
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~ 173 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD 173 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh
Confidence 46899999987 8999999999999999999887654
No 334
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.90 E-value=1.5 Score=36.69 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
....|++|.|.|.|.+|..+++.++.+|.+ |+..+++.
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~ 197 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDP 197 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 345589999999999999999999999998 88776653
No 335
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=84.84 E-value=5 Score=34.32 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=49.8
Q ss_pred hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEEE
Q 044056 95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIAA 172 (189)
Q Consensus 95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~~ 172 (189)
+.+...+|+|.|.-+. +..++--++ =++.+.+++ ..+.|+||++||-+ ++.+..+..+..|||+|...
T Consensus 117 ~~a~~~~vPVINa~~~---~~HPtQaLa--Dl~Ti~e~~-----g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~ 186 (331)
T PRK02102 117 ELAKYSGVPVWNGLTD---EWHPTQMLA--DFMTMKEHF-----GPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRIC 186 (331)
T ss_pred HHHHhCCCCEEECCCC---CCChHHHHH--HHHHHHHHh-----CCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEE
Confidence 3344567999998553 333333222 223333321 25889999999997 88999999999999999999
Q ss_pred cCCC
Q 044056 173 KRSW 176 (189)
Q Consensus 173 ~r~~ 176 (189)
.|..
T Consensus 187 ~P~~ 190 (331)
T PRK02102 187 APKE 190 (331)
T ss_pred CCcc
Confidence 8754
No 336
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.79 E-value=1.6 Score=38.76 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=31.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 47999999999999999999999999999877653
No 337
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.78 E-value=1.7 Score=38.43 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=31.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++.|||-|.||-++|..++.+|.+|..+.+...
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 57999999999999999999999999988876543
No 338
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=84.73 E-value=1.2 Score=36.78 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.|.+|.|.| -|.+|+.+++.++.+|.+|+..+++.
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~ 174 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSD 174 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcH
Confidence 4589999999 69999999999999999999987654
No 339
>PLN02507 glutathione reductase
Probab=84.62 E-value=1.6 Score=39.14 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=32.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
.++|.|||-|.||-++|..+..+|.+|..+.+....
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 589999999999999999999999999998876543
No 340
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=84.61 E-value=1.1 Score=37.91 Aligned_cols=36 Identities=31% Similarity=0.378 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
-.|.+|.|.|.|.+|+.+++.++++|++ |++.+++.
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~ 217 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVP 217 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH
Confidence 3578999999999999999999999997 88876654
No 341
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=84.59 E-value=1.4 Score=36.73 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHcc-CCCEEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRP-FGVKIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~a-fG~~V~~~~r~~~ 177 (189)
-.|.+|.|.|.|.+|..+++.++. +|++|++.+++.+
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~ 198 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDD 198 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChH
Confidence 347899999999999999999997 5999999877653
No 342
>PRK08291 ectoine utilization protein EutC; Validated
Probab=84.56 E-value=1.9 Score=36.55 Aligned_cols=37 Identities=14% Similarity=0.014 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHc-cCCC-EEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLR-PFGV-KIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~ 178 (189)
..++++|+|.|..|+..+..+. ..+. +|..|+|+..+
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~ 169 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK 169 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 3589999999999999888887 4664 69999998554
No 343
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=84.55 E-value=1.7 Score=35.20 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=32.0
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..|+++.|.|. |.+|+++++.+++.|.+|+..+++.
T Consensus 143 ~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~ 179 (325)
T cd08253 143 KAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSA 179 (325)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35899999995 9999999999999999999887754
No 344
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.39 E-value=3.5 Score=36.95 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=35.0
Q ss_pred CCCCCEEEEEcC----------CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 140 TLLGKTVFISGF----------GNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 140 ~l~gktvGIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||....
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~ 369 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTE 369 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCCh
Confidence 689999999998 568899999999999999999998544
No 345
>PRK10262 thioredoxin reductase; Provisional
Probab=84.21 E-value=1.8 Score=36.13 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...+++|.|||-|.+|-++|..|..+|.+|..+.+..
T Consensus 143 ~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 143 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred HcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 3468999999999999999999999999999998764
No 346
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=84.15 E-value=1.2 Score=37.95 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
..|.+|.|.|.|.+|..+++.++.+|.+ |+..+++.
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~ 218 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINK 218 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 3489999999999999999999999996 77776543
No 347
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=84.03 E-value=1.9 Score=35.60 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..+.+|.|.|.|.+|+.+++.++.+|.+|++.+++.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~ 199 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKE 199 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 446899999999999999999999999999988754
No 348
>PRK14727 putative mercuric reductase; Provisional
Probab=83.93 E-value=1.6 Score=38.78 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=30.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
.++|.|||-|.||-++|..+..+|.+|..+.+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 589999999999999999999999999988764
No 349
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=83.92 E-value=1.9 Score=35.68 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=32.1
Q ss_pred CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.-.|.+|.|.| .|.+|+.+++.+++.|++|++.++..
T Consensus 138 ~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~ 175 (327)
T PRK10754 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSA 175 (327)
T ss_pred CCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34679999995 89999999999999999999887653
No 350
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=83.84 E-value=1.8 Score=35.20 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=30.7
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r 174 (189)
-.|.+|.|.|. |.+|+.+++.+++.|++|+..++
T Consensus 142 ~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~ 176 (319)
T cd08267 142 KPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCS 176 (319)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 46899999997 99999999999999999988764
No 351
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=83.82 E-value=1.6 Score=36.97 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=28.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHc-cCC-CEEEEEcCCCCCc
Q 044056 143 GKTVFISGFGNIGVELAKRLR-PFG-VKIIAAKRSWASH 179 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~-afG-~~V~~~~r~~~~~ 179 (189)
-+++||||+|.+|+.-++.+. .+. -+|..|||+....
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~ 166 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR 166 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH
Confidence 589999999999998766654 343 4799999986553
No 352
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=83.74 E-value=1.6 Score=38.96 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=34.3
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.....||+|.|||.|..|..+|.-+...+-+|....|..
T Consensus 199 ~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 199 PDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred ccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 345689999999999999999999999999998887754
No 353
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=83.69 E-value=2 Score=34.97 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=32.0
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..++++.|.|. |.+|+.+++.+++.|.+|+..+++.
T Consensus 143 ~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~ 179 (328)
T cd08268 143 RPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTS 179 (328)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 35789999997 9999999999999999999887764
No 354
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=83.68 E-value=2.3 Score=31.68 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..+++.++-++ + ..+.++.||++.|+|-+. +|+.+|.+|..-|++|...+++.+
T Consensus 9 p~t~~a~~~ll----~----~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~ 63 (140)
T cd05212 9 SPVAKAVKELL----N----KEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI 63 (140)
T ss_pred ccHHHHHHHHH----H----HcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc
Confidence 44555555444 2 246799999999999875 699999999999999999986543
No 355
>PLN02546 glutathione reductase
Probab=83.67 E-value=1.8 Score=39.60 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++|.|||-|.||-++|..+..+|.+|..+.+...
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 468999999999999999999999999999987643
No 356
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=83.54 E-value=11 Score=33.15 Aligned_cols=82 Identities=23% Similarity=0.324 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCCCcCChhHHhhC-C-eEEEe---------cCCCCCCCchhHHHHHHHHHHHHHhcCC--CCCCCCCCC
Q 044056 77 NPMNLIIRFRVGLEGVDIDALTNC-A-IKAAR---------ILGDVSGNAASCAELSIYLMLGLLRKHI--VPTGETLLG 143 (189)
Q Consensus 77 p~Lk~I~~~~aG~d~id~~~~~~~-g-I~v~n---------~~g~~~~~a~~vAE~~l~liL~~~R~~~--~~~~~~l~g 143 (189)
++++++.....|-|-- ++++++. + +.++. .||.-..+--+--| ..+++-.++ .....++++
T Consensus 86 ~rfsf~gNv~vG~dvs-l~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sare-----fv~Wyng~P~~~~le~dls~ 159 (468)
T KOG1800|consen 86 ERFSFFGNVKVGRDVS-LKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISARE-----FVGWYNGLPENQNLEPDLSG 159 (468)
T ss_pred cceEEEecceeccccc-HHHHhhcccEEEEEecCCCCcccCCCCcccccceehhh-----hhhhccCCCcccccCccccc
Confidence 6899999888888753 3444432 2 22222 22210000001111 123333344 334678999
Q ss_pred CEEEEEcCCHHHHHHHHHHcc
Q 044056 144 KTVFISGFGNIGVELAKRLRP 164 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~a 164 (189)
.+|+|||.|++.--||+.|-.
T Consensus 160 ~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 160 RKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred ceEEEEccCchhhhhhhhhhC
Confidence 999999999999999999863
No 357
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=83.44 E-value=1.8 Score=38.05 Aligned_cols=35 Identities=34% Similarity=0.411 Sum_probs=32.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
++++.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 68999999999999999999999999999987654
No 358
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=83.44 E-value=2.2 Score=36.57 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.++++.|||-|.+|-++|..|...|.+|..+++...
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~ 175 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS 175 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 468999999999999999999999999999987654
No 359
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=83.42 E-value=6.2 Score=33.82 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=50.7
Q ss_pred hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCC-CCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEE
Q 044056 95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTG-ETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIA 171 (189)
Q Consensus 95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~-~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~ 171 (189)
+.+.-.+|+|.|.-+. ...++-- ++=++.+.++ .+ ..+.|++|+++|-+ ++.+..+..+..||+++..
T Consensus 116 ~~a~~~~vPVINa~~~---~~HPtQa--LaDl~Ti~e~----~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~ 186 (336)
T PRK03515 116 TLAEYAGVPVWNGLTN---EFHPTQL--LADLLTMQEH----LPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRL 186 (336)
T ss_pred HHHHhCCCCEEECCCC---CCChHHH--HHHHHHHHHH----hCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEE
Confidence 3344567999998553 3344332 2223333343 22 35899999999976 6899999999999999999
Q ss_pred EcCCC
Q 044056 172 AKRSW 176 (189)
Q Consensus 172 ~~r~~ 176 (189)
..|..
T Consensus 187 ~~P~~ 191 (336)
T PRK03515 187 VAPKA 191 (336)
T ss_pred ECCch
Confidence 98854
No 360
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=83.42 E-value=1.3 Score=36.83 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=31.2
Q ss_pred CCEEEEEcC-CHHHHHHHHHHccC-CCEEEEEcCCCC
Q 044056 143 GKTVFISGF-GNIGVELAKRLRPF-GVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~-G~IG~~vA~~l~af-G~~V~~~~r~~~ 177 (189)
|.+|.|.|. |.+|+.++++++++ |++|++..++..
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~ 185 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPE 185 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHH
Confidence 889999995 99999999999998 999999877643
No 361
>PRK13748 putative mercuric reductase; Provisional
Probab=83.41 E-value=1.8 Score=39.11 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
++++.|||-|.||-++|..+..+|.+|..+.+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 589999999999999999999999999998864
No 362
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=83.36 E-value=2.1 Score=35.13 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=32.0
Q ss_pred CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-.+.+|.|.| -|.+|+.+++.++++|.+|++.+++.
T Consensus 141 ~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~ 177 (324)
T cd08244 141 TPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGP 177 (324)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3478999999 69999999999999999999988754
No 363
>PRK05855 short chain dehydrogenase; Validated
Probab=83.31 E-value=2.1 Score=38.24 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=34.9
Q ss_pred CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.....++++.|+|- |.||+++|+.|..-|++|+..+|+..
T Consensus 310 ~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~ 350 (582)
T PRK05855 310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEA 350 (582)
T ss_pred cccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34667899999985 99999999999999999999998753
No 364
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=83.26 E-value=1.9 Score=38.07 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=31.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 48999999999999999999999999999987644
No 365
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=83.23 E-value=2.1 Score=37.23 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=30.1
Q ss_pred CCCEEEEEc-CCHHHHHHHHHHccCCC---EEEEEcCCC
Q 044056 142 LGKTVFISG-FGNIGVELAKRLRPFGV---KIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG-~G~IG~~vA~~l~afG~---~V~~~~r~~ 176 (189)
.|.+|.|+| .|.||...++.++++|+ +|++.+++.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~ 213 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVND 213 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCH
Confidence 578999998 69999999999999875 799888754
No 366
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=83.22 E-value=5.9 Score=33.38 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=49.9
Q ss_pred HHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056 96 ALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 96 ~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r 174 (189)
.++..+++|.|+-+. +..++--++= ++.+.+. .+ .+.|.+|+++|= +++-+..+..+..||++|....|
T Consensus 111 ~a~~~~vPVINa~~~---~~HPtQaL~D--l~Ti~e~----~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P 180 (304)
T TIGR00658 111 LAKYASVPVINGLTD---LFHPCQALAD--LLTIIEH----FG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATP 180 (304)
T ss_pred HHHhCCCCEEECCCC---CCChHHHHHH--HHHHHHH----hC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECC
Confidence 344567999998554 3344433222 2333332 12 488999999997 78889999999999999999987
Q ss_pred CCC
Q 044056 175 SWA 177 (189)
Q Consensus 175 ~~~ 177 (189)
..-
T Consensus 181 ~~~ 183 (304)
T TIGR00658 181 EGY 183 (304)
T ss_pred chh
Confidence 543
No 367
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=83.20 E-value=2.4 Score=37.18 Aligned_cols=35 Identities=31% Similarity=0.349 Sum_probs=31.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 192 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASL 192 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 47999999999999999999999999999987643
No 368
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=83.16 E-value=1.8 Score=36.00 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
..|++|.|.|-|.+|+.+++.++..|.+ |++.+++.
T Consensus 164 ~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~ 200 (343)
T cd08235 164 KPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNE 200 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 4589999999999999999999999999 88776653
No 369
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=83.14 E-value=2 Score=37.77 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++.|||-|.+|-++|..+..+|.+|..+++...
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 47899999999999999999999999999988654
No 370
>PRK14694 putative mercuric reductase; Provisional
Probab=83.09 E-value=1.8 Score=38.28 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=30.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
++++.|||-|.||-++|..+..+|.+|..+.+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 589999999999999999999999999998763
No 371
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=83.08 E-value=1.9 Score=41.95 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
...||+|.|||-|.-|-+.|..|...|.+|..|++...
T Consensus 303 ~~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~ 340 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD 340 (944)
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence 34699999999999999999999999999999998643
No 372
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=83.05 E-value=2.1 Score=37.23 Aligned_cols=36 Identities=36% Similarity=0.422 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++|.|+|-|.+|-++|..++..|.+|..+++...
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 468999999999999999999999999999887653
No 373
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=83.04 E-value=16 Score=32.30 Aligned_cols=35 Identities=29% Similarity=0.253 Sum_probs=30.2
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEE
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA 172 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~ 172 (189)
...+.||++.|.|-+.-.-.+++.+..+||+|.+.
T Consensus 306 ~~~l~Gkrvai~~~~~~~~~l~~~l~elGm~v~~~ 340 (432)
T TIGR01285 306 HFFLGGKKVAIAAEPDLLAAWATFFTSMGAQIVAA 340 (432)
T ss_pred HHhhCCCEEEEEcCHHHHHHHHHHHHHCCCEEEEE
Confidence 34678999999998889999999999999997544
No 374
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=83.00 E-value=2.1 Score=34.46 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=31.2
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
..|++|.|.|. |.+|+.+++.+++.|.+|+..++.
T Consensus 143 ~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~ 178 (309)
T cd05289 143 KAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASA 178 (309)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecc
Confidence 45799999996 999999999999999999887654
No 375
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=82.74 E-value=2.1 Score=38.27 Aligned_cols=38 Identities=42% Similarity=0.663 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
...+.|+|+-|=|+|++|+..|+++..+|.+|++..-+
T Consensus 246 ~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~ 283 (514)
T KOG2250|consen 246 KKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDS 283 (514)
T ss_pred CCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcC
Confidence 47899999999999999999999999999999987543
No 376
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=82.71 E-value=2.3 Score=34.85 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=32.4
Q ss_pred CCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...+.++.|.|-+ .||+++++.+++.|.+|+..+++.
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~ 201 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSE 201 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3467899999996 899999999999999999987764
No 377
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=82.58 E-value=2.5 Score=37.72 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=37.7
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
......+++|+|||-|.-|.+.|..|..-|..|+.|.+..+.
T Consensus 117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 455777899999999999999999999999999999987654
No 378
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=82.57 E-value=2 Score=35.36 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=30.7
Q ss_pred CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|.+|.|.| -|.+|+.+++.+++.|++++...++.
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~ 175 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSE 175 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999 69999999999999999987776654
No 379
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=82.36 E-value=3.1 Score=32.94 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=34.0
Q ss_pred CCCCCCCCCEEEEEcCCHH-HHHHHHHHccCCCEEEEEc
Q 044056 136 PTGETLLGKTVFISGFGNI-GVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 136 ~~~~~l~gktvGIvG~G~I-G~~vA~~l~afG~~V~~~~ 173 (189)
+.+.++.||++.|||-+.| |+-+|.+|..-|++|...|
T Consensus 55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~ 93 (197)
T cd01079 55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVD 93 (197)
T ss_pred ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEe
Confidence 3467999999999999975 9999999999999999985
No 380
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.33 E-value=2.2 Score=38.44 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
.+++|.|+|-|.+|-++|..+..+|.+|..+.+.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~ 384 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA 384 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC
Confidence 5799999999999999999999999999888754
No 381
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=82.29 E-value=2.5 Score=34.35 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...+++|.|+|-|.+|-++|..+..++.+|..+.+..
T Consensus 138 ~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 138 FFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred hcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 4468999999999999999999999999999888764
No 382
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=82.26 E-value=2 Score=40.09 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+++|.|||-|.||-++|..+..+|.+|..+.+...
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 57899999999999999999999999999987654
No 383
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=82.20 E-value=6.3 Score=33.21 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=50.5
Q ss_pred HHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056 96 ALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 96 ~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r 174 (189)
.+...+++|.|+-+. +..++-- ++=++.+.++ .+ .+.|++|+++|= +++.+..+..+..||++|....|
T Consensus 115 ~a~~~~vPVINag~~---~~HPtQa--L~Dl~Ti~e~----~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P 184 (304)
T PRK00779 115 LAEYSTVPVINGLTD---LSHPCQI--LADLLTIYEH----RG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATP 184 (304)
T ss_pred HHHhCCCCEEeCCCC---CCChHHH--HHHHHHHHHH----hC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECC
Confidence 345567999999664 3343332 2223333343 12 488999999997 78999999999999999999987
Q ss_pred CC
Q 044056 175 SW 176 (189)
Q Consensus 175 ~~ 176 (189)
..
T Consensus 185 ~~ 186 (304)
T PRK00779 185 KG 186 (304)
T ss_pred cc
Confidence 54
No 384
>PLN02702 L-idonate 5-dehydrogenase
Probab=82.19 E-value=2.3 Score=36.07 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS 175 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~ 175 (189)
..|.+|.|+|.|.+|...++.++++|++ |+..++.
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~ 215 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVD 215 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3689999999999999999999999996 6666654
No 385
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=82.13 E-value=2.3 Score=37.62 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 47899999999999999999999999988887643
No 386
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=82.08 E-value=2.2 Score=38.50 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
....|.|||.|..|..+|..|...|.+|..+++....
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4467999999999999999999999999999988644
No 387
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=81.96 E-value=2.2 Score=36.17 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS 175 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~ 175 (189)
-.+.+|.|.|.|.+|+.+++.++.+|++ |++.+++
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s 221 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVR 221 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3578999999999999999999999999 8777654
No 388
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=81.94 E-value=8 Score=32.63 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=49.3
Q ss_pred hhCCeEEEecC-CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC---CHHHHHHHHHHccCCCEEEEEc
Q 044056 98 TNCAIKAARIL-GDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF---GNIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 98 ~~~gI~v~n~~-g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~---G~IG~~vA~~l~afG~~V~~~~ 173 (189)
....|+|.|.- |....-.++.|+. +.+.++ .+ .+.|++|+++|= +++.+..+..+..||++|....
T Consensus 120 ~~~~vPVINa~~g~~~HPtQ~LaDl-----~Ti~e~----~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~ 189 (305)
T PRK00856 120 ESSDVPVINAGDGSHQHPTQALLDL-----LTIREE----FG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIA 189 (305)
T ss_pred HHCCCCEEECCCCCCCCcHHHHHHH-----HHHHHH----hC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEC
Confidence 34679999985 3311123445552 222232 12 588999999988 5999999999999999999998
Q ss_pred CCCC
Q 044056 174 RSWA 177 (189)
Q Consensus 174 r~~~ 177 (189)
|..-
T Consensus 190 P~~~ 193 (305)
T PRK00856 190 PPTL 193 (305)
T ss_pred Cccc
Confidence 8653
No 389
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=81.83 E-value=2.6 Score=35.16 Aligned_cols=35 Identities=29% Similarity=0.555 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS 175 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 175 (189)
..|++|.|.|-|.+|+.+++.++++|. +|++.+++
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~ 197 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVN 197 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 368999999999999999999999999 57777644
No 390
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=81.78 E-value=2.5 Score=35.31 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS 175 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~ 175 (189)
..|.+|.|.|.|.+|+.+++.+++.|.+ |++.+++
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~ 195 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPN 195 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4689999999999999999999999997 8777543
No 391
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=81.74 E-value=2.3 Score=39.50 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=32.9
Q ss_pred CCCCCCEEEEEc-CCHHHHHHHHHHccC-CCEEEEEcCCCC
Q 044056 139 ETLLGKTVFISG-FGNIGVELAKRLRPF-GVKIIAAKRSWA 177 (189)
Q Consensus 139 ~~l~gktvGIvG-~G~IG~~vA~~l~af-G~~V~~~~r~~~ 177 (189)
.--.+++|.|.| .|-||+.+++.|..- |.+|++++|...
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~ 351 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD 351 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch
Confidence 344688999999 699999999999864 799999998654
No 392
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=81.70 E-value=2.1 Score=41.86 Aligned_cols=38 Identities=24% Similarity=0.152 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
...+|+|.|||-|.-|-..|..|...|.+|..+++...
T Consensus 536 ~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 35799999999999999999999999999999997643
No 393
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=81.70 E-value=2.2 Score=35.45 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|++|.|.|- |.+|+.+++.+++.|.+|+...++.
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDR 181 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 5899999986 9999999999999999998887654
No 394
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=81.62 E-value=1.6 Score=42.72 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=33.1
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC------EEEEEcCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV------KIIAAKRS 175 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~------~V~~~~r~ 175 (189)
...|.+.+|.|||+|.||.++++.|...|+ ++..+|..
T Consensus 414 Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D 457 (1008)
T TIGR01408 414 QQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPD 457 (1008)
T ss_pred HHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCC
Confidence 356788999999999999999999998887 78888864
No 395
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=81.60 E-value=2.4 Score=35.35 Aligned_cols=35 Identities=37% Similarity=0.537 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 176 (189)
.|.+|.|.|.|.+|+.++++++.+|.+ |++.+++.
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~ 194 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDD 194 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence 478999999999999999999999998 88887654
No 396
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=81.52 E-value=2.4 Score=37.99 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=30.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHccC---CCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPF---GVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~af---G~~V~~~~r~~~ 177 (189)
.+++.|||-|.||-++|..+..| |.+|..+.+...
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~ 224 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM 224 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence 58999999999999999887776 999998876643
No 397
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=81.44 E-value=2.7 Score=38.29 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..+++|.|||-|.+|-++|..+..+|.+|..+.+..
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 468999999999999999999999999999998765
No 398
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=81.36 E-value=1.5 Score=42.88 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=35.4
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS 178 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 178 (189)
...|+..+|.|+|+|.+|.++|+.|..-|. +|..+|...-+
T Consensus 19 q~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~ 60 (1008)
T TIGR01408 19 MQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQ 60 (1008)
T ss_pred HHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeec
Confidence 457888999999999999999999999998 58888876533
No 399
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=81.26 E-value=2.3 Score=35.26 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=29.6
Q ss_pred CCCEEEEE--cCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFIS--GFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIv--G~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.+.++.|+ |.|.+|+..++.++++|++|++.+++.
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~ 178 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRK 178 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45566665 899999999999999999999887754
No 400
>PRK08105 flavodoxin; Provisional
Probab=81.23 E-value=2.3 Score=31.85 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=30.0
Q ss_pred CCCCCCEEEEEcCCH--------HHHHHHHHHccCCCEEEE
Q 044056 139 ETLLGKTVFISGFGN--------IGVELAKRLRPFGVKIIA 171 (189)
Q Consensus 139 ~~l~gktvGIvG~G~--------IG~~vA~~l~afG~~V~~ 171 (189)
..|.|++.+|+|+|. .++.+.++|+.+|++.++
T Consensus 80 ~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 80 GYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred cccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 368899999999997 899999999999999876
No 401
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=81.18 E-value=2.4 Score=35.64 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS 175 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~ 175 (189)
..|.+|.|.|.|.+|+.+++.+++.|++ |++.++.
T Consensus 173 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~ 208 (350)
T cd08256 173 KFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLK 208 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 3589999999999999999999999987 5666654
No 402
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=81.17 E-value=3.4 Score=35.60 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=32.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
...|.|||-|-.|..+|..|...|.+|..+++.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 467999999999999999999999999999987654
No 403
>PLN02985 squalene monooxygenase
Probab=81.13 E-value=7.3 Score=35.21 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=34.8
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..+.-....|.|||.|-.|..+|..|..-|.+|..+++...
T Consensus 37 ~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 37 EERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred ccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 34455566899999999999999999989999999998753
No 404
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=80.68 E-value=2.8 Score=36.62 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.+++|.|+|-|.+|-++|..++.+|.+|..+.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 46899999999999999999999999999887754
No 405
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=80.57 E-value=1.9 Score=35.66 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~ 173 (189)
.|.+|.|.|.|.+|+.+++.++++|.+|++..
T Consensus 164 ~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~ 195 (306)
T cd08258 164 PGDTVVVFGPGPIGLLAAQVAKLQGATVVVVG 195 (306)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEC
Confidence 57999999999999999999999999998764
No 406
>PTZ00052 thioredoxin reductase; Provisional
Probab=80.54 E-value=2.4 Score=38.02 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=30.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
.+++.|||-|.||-++|..+..+|.+|..+.+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 468999999999999999999999999998763
No 407
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=80.48 E-value=3.1 Score=34.22 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.|.+|.|.|-|.+|+.+++.+++.|++|+..+++.
T Consensus 160 ~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~ 194 (336)
T cd08276 160 PGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSD 194 (336)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57899999999999999999999999999887653
No 408
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=80.40 E-value=20 Score=30.74 Aligned_cols=35 Identities=40% Similarity=0.506 Sum_probs=29.8
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~ 173 (189)
..+.|+++.|.|-+...-.+++.+..+||+|...-
T Consensus 275 ~~l~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~ 309 (399)
T cd00316 275 EYLGGKKVAIFGDGDLLLALARFLLELGMEVVAAG 309 (399)
T ss_pred HHhcCCEEEEECCCcHHHHHHHHHHHCCCEEEEEE
Confidence 45789999999999888889999999999965544
No 409
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=80.23 E-value=3.2 Score=34.58 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
-.|.+|.|.|.|.+|+.+++.++.+|. +|+..+++.
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~ 202 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNP 202 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 358999999999999999999999996 788876543
No 410
>PRK10537 voltage-gated potassium channel; Provisional
Probab=80.23 E-value=2.6 Score=36.84 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
....+-|+|+|++|+.+++.|+..|.++...++.
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d 272 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL 272 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence 3567999999999999999999889888888754
No 411
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=80.15 E-value=2.6 Score=35.18 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=36.9
Q ss_pred CCCCCCCCEEEEEcCCHH-HHHHHHHHccCCCEEEEEcCCCCC
Q 044056 137 TGETLLGKTVFISGFGNI-GVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
...+|+||++-|||-++| |+-+|..|..-+++|.......+.
T Consensus 150 ~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~ 192 (283)
T COG0190 150 YGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKD 192 (283)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCC
Confidence 566999999999999986 999999999999999988766543
No 412
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.12 E-value=3 Score=34.73 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.+.+|.|.|.|. +|+++++.+++.|.+|+...++.
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~ 200 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGD 200 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999976 99999999999999999987764
No 413
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=79.73 E-value=3.2 Score=39.26 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...+++|.|||-|.-|...|..|...|.+|..|++..
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4579999999999999999999999999999999753
No 414
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=79.57 E-value=3 Score=36.82 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS 175 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 175 (189)
.+++|.|||-|.+|-.+|..+..+|. +|..+.+.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 68999999999999999999999998 78877664
No 415
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.46 E-value=3.1 Score=37.46 Aligned_cols=36 Identities=31% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..||+|.|||-|.+|-++|..|..++.+|....+..
T Consensus 349 ~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 349 FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 468999999999999999999999999988877654
No 416
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=79.34 E-value=16 Score=31.21 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=50.7
Q ss_pred hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEEE
Q 044056 95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIAA 172 (189)
Q Consensus 95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~~ 172 (189)
..+...+|+|.|.-+. +..++--+ +=++.+.+++ .+..+.|++|+++|=+ ++.+..+..+..||++|...
T Consensus 116 ~~a~~~~vPVINa~~~---~~HPtQaL--aDl~Ti~e~~---g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~ 187 (334)
T PRK12562 116 TLAEYAGVPVWNGLTN---EFHPTQLL--ADLLTMQEHL---PGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLV 187 (334)
T ss_pred HHHHhCCCCEEECCCC---CCChHHHH--HHHHHHHHHh---CCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEE
Confidence 3345568999998654 33443322 2233333331 1235889999999976 78999999999999999998
Q ss_pred cCCC
Q 044056 173 KRSW 176 (189)
Q Consensus 173 ~r~~ 176 (189)
.|..
T Consensus 188 ~P~~ 191 (334)
T PRK12562 188 APQA 191 (334)
T ss_pred CCcc
Confidence 8754
No 417
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=79.34 E-value=2.8 Score=34.04 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=34.2
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS 178 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 178 (189)
...+...+|.|+|+|.+|..+++.+...|. ++..+|+..-+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~ 66 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVE 66 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCccc
Confidence 457889999999999999999999998887 47777765433
No 418
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=79.27 E-value=3.6 Score=32.58 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..|.+|.|.| -|.+|+.+++.++++|.+|+..+++.
T Consensus 103 ~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~ 139 (288)
T smart00829 103 RPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSP 139 (288)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3578999998 69999999999999999999888654
No 419
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=79.25 E-value=21 Score=30.62 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=48.9
Q ss_pred HhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056 97 LTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 97 ~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
+.-.+++|.|.-+. +..++--++= ++.+.+++ ..+..+.|++|+++|= .++.+..+..+..|||+|....|.
T Consensus 115 a~~~~vPVINa~~~---~~HPtQaLaD--l~Ti~e~~--g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~ 187 (338)
T PRK02255 115 AKYATVPVINGMSD---YNHPTQELGD--LFTMIEHL--PEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPK 187 (338)
T ss_pred HHhCCCCEEECCCC---CCChHHHHHH--HHHHHHHh--CCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCC
Confidence 34467999997553 3333322222 22333331 1124689999999997 688888889999999999999886
Q ss_pred C
Q 044056 176 W 176 (189)
Q Consensus 176 ~ 176 (189)
.
T Consensus 188 ~ 188 (338)
T PRK02255 188 G 188 (338)
T ss_pred c
Confidence 4
No 420
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=79.23 E-value=1.4 Score=31.43 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=28.2
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
|+|.|+|-|.|+..+.+-++.+|.+++.....+
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~ 35 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNP 35 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGG
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCch
Confidence 789999999999999999999999977666544
No 421
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=79.07 E-value=3.1 Score=34.92 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHc-cCCC-EEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLR-PFGV-KIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~ 178 (189)
.-+++||+|.|..|+.-++.+. -+.. +|..|+|++..
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~ 154 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDH 154 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHH
Confidence 3699999999999998777775 5666 59999998655
No 422
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=79.07 E-value=4 Score=36.08 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=32.7
Q ss_pred CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
.+..-..++|.|.| .|-||+.+++.|.+-|.+|+++|+.
T Consensus 114 ~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 114 VGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred cccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 33444567899998 6999999999999999999999975
No 423
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=79.03 E-value=4.1 Score=32.25 Aligned_cols=62 Identities=18% Similarity=-0.003 Sum_probs=40.6
Q ss_pred hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEE
Q 044056 95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA 172 (189)
Q Consensus 95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~ 172 (189)
+++++.|+.....|... +++.+++.. .. ..+.|++|.|..-......+.+.|+..|.+|..+
T Consensus 93 ~~l~~~G~~~~~~~~~~--~~~~l~~~l-------~~-------~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~ 154 (249)
T PRK05928 93 LALKKLGGKVVFVPEDG--ESSELLLEL-------PE-------LLLKGKRVLYLRGNGGREVLGDTLEERGAEVDEC 154 (249)
T ss_pred HHHHHcCCCccccCCCC--cChHHHHhC-------hh-------hhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeEE
Confidence 45677888766555431 223222211 11 1167899999988888888999999999886653
No 424
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.96 E-value=3.3 Score=33.72 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=31.7
Q ss_pred CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
...|.++.|.| .|.+|+++++.++++|++|+..++.
T Consensus 142 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~ 178 (326)
T cd08272 142 VQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS 178 (326)
T ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech
Confidence 34689999999 7999999999999999999887664
No 425
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=78.89 E-value=1.7 Score=29.84 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=23.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHc-cCCCE-EEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLR-PFGVK-IIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~-afG~~-V~~~~r~~~ 177 (189)
..++.|+|+|+.|++++.... ..|++ +..+|..++
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~ 39 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPE 39 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTT
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCC
Confidence 467999999999999875443 44444 344444443
No 426
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=78.85 E-value=4.5 Score=33.89 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=30.5
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEc
Q 044056 140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~ 173 (189)
...+.+|.|.|. |.+|+.+++.++++|++|+...
T Consensus 152 ~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~ 186 (339)
T cd08249 152 ASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA 186 (339)
T ss_pred CCCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE
Confidence 356899999996 8999999999999999998866
No 427
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=78.67 E-value=3.5 Score=34.88 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=60.7
Q ss_pred HHhcC-CCCeEEEEcCCCCCcCChhHHhhCCe-EEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEE
Q 044056 72 VITRA-NPMNLIIRFRVGLEGVDIDALTNCAI-KAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFIS 149 (189)
Q Consensus 72 ~l~~~-p~Lk~I~~~~aG~d~id~~~~~~~gI-~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIv 149 (189)
.++.+ ++.=+|=....|+-++ .+..-++ +|.|+.+- . +..++- ++.=++.+.+. .+ .+.|++|+|+
T Consensus 97 tl~ayg~D~iViRH~~egaa~~---~a~~~~~~pvINaGDG-~-~qHPTQ--~LLDl~TI~~~----~G-~~~gl~iaiv 164 (316)
T COG0540 97 TLSAYGVDAIVIRHPEEGAARL---LAEFSGVNPVINAGDG-S-HQHPTQ--ALLDLYTIREE----FG-RLDGLKIAIV 164 (316)
T ss_pred HHHhhCCCEEEEeCccccHHHH---HHHhcCCCceEECCCC-C-CCCccH--HHHHHHHHHHH----hC-CcCCcEEEEE
Confidence 34444 4444444444444444 2333356 79998764 2 444443 33334444443 22 3999999999
Q ss_pred c---CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 150 G---FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 150 G---~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
| +|+.-+..++.|+.||++|..+.|..
T Consensus 165 GDlkhsRva~S~~~~L~~~ga~v~lvsP~~ 194 (316)
T COG0540 165 GDLKHSRVAHSNIQALKRFGAEVYLVSPET 194 (316)
T ss_pred ccccchHHHHHHHHHHHHcCCEEEEECchH
Confidence 9 89999999999999999999999853
No 428
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=78.64 E-value=3.6 Score=29.25 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=23.4
Q ss_pred EEEEEc-CCHHHHHHHHHHccC-CCEEEEE
Q 044056 145 TVFISG-FGNIGVELAKRLRPF-GVKIIAA 172 (189)
Q Consensus 145 tvGIvG-~G~IG~~vA~~l~af-G~~V~~~ 172 (189)
++||+| .|.+|+.+++.+... ++++.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEE
Confidence 489999 599999999999764 7777766
No 429
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.57 E-value=3.8 Score=33.76 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056 140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r 174 (189)
...|.+|.|.|. |.+|+.+.+.+++.|.+|+...+
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~ 172 (331)
T cd08273 137 VLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS 172 (331)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 446899999996 99999999999999999988764
No 430
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=78.56 E-value=12 Score=33.18 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=58.7
Q ss_pred HHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecC-CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEE
Q 044056 71 NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARIL-GDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFIS 149 (189)
Q Consensus 71 ~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~-g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIv 149 (189)
.+|+++.. +|......-. .-.+.+....|+|.|.- |....-.+++|+. +.+.+++. ..+..+.|++|.++
T Consensus 177 rvLs~y~D--~IviR~~~~~-~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl-----~Ti~E~~g-~~g~~l~G~kIa~v 247 (429)
T PRK11891 177 RVMSGYVD--ALVIRHPEQG-SVAEFARATNLPVINGGDGPGEHPSQALLDL-----YTIQREFS-RLGKIVDGAHIALV 247 (429)
T ss_pred HHHHHhCC--EEEEeCCchh-HHHHHHHhCCCCEEECCCCCCCCcHHHHHHH-----HHHHHHhC-ccCCCcCCCEEEEE
Confidence 35666644 3333332212 22234455689999986 4411123344542 22223311 11234899999999
Q ss_pred cCC---HHHHHHHHHHccC-CCEEEEEcCCCC
Q 044056 150 GFG---NIGVELAKRLRPF-GVKIIAAKRSWA 177 (189)
Q Consensus 150 G~G---~IG~~vA~~l~af-G~~V~~~~r~~~ 177 (189)
|-+ +.....+..+..| ||+|....|..-
T Consensus 248 GD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~ 279 (429)
T PRK11891 248 GDLKYGRTVHSLVKLLALYRGLKFTLVSPPTL 279 (429)
T ss_pred CcCCCChHHHHHHHHHHHhcCCEEEEECCCcc
Confidence 994 8899999998877 999999887543
No 431
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=78.43 E-value=2.7 Score=37.20 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=33.8
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW 176 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 176 (189)
+..|.+.+|.|+|+|.+|.++++-|.--|. ++..+|...
T Consensus 15 Q~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 15 QAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred HHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCc
Confidence 456788999999999999999999998887 688888764
No 432
>PRK09004 FMN-binding protein MioC; Provisional
Probab=78.38 E-value=22 Score=26.35 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCCCCCEEEEEcCC--------HHHHHHHHHHccCCCEEEE
Q 044056 139 ETLLGKTVFISGFG--------NIGVELAKRLRPFGVKIIA 171 (189)
Q Consensus 139 ~~l~gktvGIvG~G--------~IG~~vA~~l~afG~~V~~ 171 (189)
..+.|++.+|+|+| ..++.+-++++.+|++.++
T Consensus 78 ~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 118 (146)
T PRK09004 78 PDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIG 118 (146)
T ss_pred CCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEee
Confidence 45889999999965 5689999999999998765
No 433
>PLN02686 cinnamoyl-CoA reductase
Probab=78.34 E-value=3.5 Score=35.31 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=31.9
Q ss_pred CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056 139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
..-.+|+|.|.|- |-||+.+++.|..-|.+|.+..++
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3566899999985 999999999999999999886654
No 434
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=78.27 E-value=1.5 Score=31.00 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHccC----CCEEEEEcC
Q 044056 150 GFGNIGVELAKRLRPF----GVKIIAAKR 174 (189)
Q Consensus 150 G~G~IG~~vA~~l~af----G~~V~~~~r 174 (189)
|+|.||+.+++.++.. +++|.+.-.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~ 29 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVAD 29 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEE
Confidence 8999999999999754 788666543
No 435
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=78.06 E-value=30 Score=30.35 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=45.4
Q ss_pred eEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-----C---HHHHHHHHHHccCCCEEEEEc
Q 044056 102 IKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-----G---NIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 102 I~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-----G---~IG~~vA~~l~afG~~V~~~~ 173 (189)
++|.|.-|. +..++--++=.+.+ .+++ .....+.|++|+|+|- | ++.+.++..+..|||+|....
T Consensus 153 pPVINa~~~---~~HPtQaLaDl~TI--~E~~--G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~ 225 (395)
T PRK07200 153 PTLVNLQCD---IDHPTQSMADLLHL--IEHF--GGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAH 225 (395)
T ss_pred CeEEECCCC---CCCcHHHHHHHHHH--HHHh--CCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEEC
Confidence 369998554 44444333333333 3331 1113488999999985 5 566899999999999999999
Q ss_pred CCC
Q 044056 174 RSW 176 (189)
Q Consensus 174 r~~ 176 (189)
|..
T Consensus 226 P~~ 228 (395)
T PRK07200 226 PEG 228 (395)
T ss_pred CCc
Confidence 864
No 436
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=77.83 E-value=4.4 Score=32.07 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=31.0
Q ss_pred CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
..|.+|.|.| .|.+|+.+++.++.+|.+|+..++.
T Consensus 107 ~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~ 142 (293)
T cd05195 107 QKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGS 142 (293)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3579999996 7999999999999999999888765
No 437
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=77.74 E-value=2 Score=36.64 Aligned_cols=46 Identities=30% Similarity=0.273 Sum_probs=37.4
Q ss_pred HHhcCC---CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcC
Q 044056 129 LLRKHI---VPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKR 174 (189)
Q Consensus 129 ~~R~~~---~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r 174 (189)
+.||+. ......++++=|-|||+|.+|+-++.+|-.-|+ ++..+|.
T Consensus 57 LarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 57 LARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred HHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEech
Confidence 346655 345678999999999999999999999999998 4777664
No 438
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=77.67 E-value=2.8 Score=33.11 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=26.2
Q ss_pred CEEEEEcCCHHHHHHHHHH--ccCCCEEE-EEcCCCC
Q 044056 144 KTVFISGFGNIGVELAKRL--RPFGVKII-AAKRSWA 177 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l--~afG~~V~-~~~r~~~ 177 (189)
-.+-|||.|++|++++..= +-.||++. ++|-.++
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~ 121 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPD 121 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHH
Confidence 4589999999999999864 47889854 5665543
No 439
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=77.51 E-value=4.5 Score=34.07 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=49.6
Q ss_pred HhhCCeEEEecCC-CCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC---HHHHHHHHHHccCCCEEEEE
Q 044056 97 LTNCAIKAARILG-DVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG---NIGVELAKRLRPFGVKIIAA 172 (189)
Q Consensus 97 ~~~~gI~v~n~~g-~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G---~IG~~vA~~l~afG~~V~~~ 172 (189)
+.-.+|+|.|.-. ....-.++.|+. +.+.++ .+ .+.|++|.++|-| ++.+..+..+..|||+|...
T Consensus 113 a~~s~vPVINa~~g~~~HPtQ~LaDl-----~Ti~e~----~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~ 182 (301)
T TIGR00670 113 AEVSEVPVINAGDGSNQHPTQTLLDL-----YTIYEE----FG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLI 182 (301)
T ss_pred HhhCCCCEEeCCCCCCCCcHHHHHHH-----HHHHHH----hC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEE
Confidence 3446799999853 311123344442 222232 12 5889999999995 99999999999999999999
Q ss_pred cCCCC
Q 044056 173 KRSWA 177 (189)
Q Consensus 173 ~r~~~ 177 (189)
.|..-
T Consensus 183 ~P~~~ 187 (301)
T TIGR00670 183 SPEEL 187 (301)
T ss_pred CCccc
Confidence 98653
No 440
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=77.25 E-value=27 Score=25.92 Aligned_cols=93 Identities=10% Similarity=-0.056 Sum_probs=54.6
Q ss_pred CCCcceEEEeCCCCCCchhHHHHHhhcccCceeeeCch-hHHhhcCCCeE-Eec--C-CCCCHHHHhcCCCCeEEEEcCC
Q 044056 13 DKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFL-SMHSLYASYGT-SEQ--M-IASDSNVITRANPMNLIIRFRV 87 (189)
Q Consensus 13 ~~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~adv-i~~--~-~~~~~~~l~~~p~Lk~I~~~~a 87 (189)
..+-.+|++.+............+.++...+....... ++.+.++.||+ +.. . ..++.+++. |+--++ ..
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~i~~~~ik--pGa~Vi---dv 99 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEKVPTEWIK--PGATVI---NC 99 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCccCHHHcC--CCCEEE---Ec
Confidence 34557899998875544433333333333444333333 67788899999 432 2 336777766 343333 56
Q ss_pred CCCcCChhHHhhCCeEEEecCCC
Q 044056 88 GLEGVDIDALTNCAIKAARILGD 110 (189)
Q Consensus 88 G~d~id~~~~~~~gI~v~n~~g~ 110 (189)
|.+..+.+.+.++.-.++-.||-
T Consensus 100 g~~~~~~~~~~~~a~~~tPvpgG 122 (140)
T cd05212 100 SPTKLSGDDVKESASLYVPMTGG 122 (140)
T ss_pred CCCcccchhhHhhceEEcCCCCC
Confidence 66665556777777777777763
No 441
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.00 E-value=5 Score=33.54 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=35.0
Q ss_pred CCCCCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCC
Q 044056 137 TGETLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...++.||++.|||-+ -+|+-+|.+|..-|+.|.......
T Consensus 151 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T 191 (281)
T PRK14183 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT 191 (281)
T ss_pred cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 4669999999999999 789999999998899998776543
No 442
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=76.88 E-value=4.4 Score=33.70 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKR 174 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r 174 (189)
-.|.+|.|.|.|.+|+.+++.+++.|++ |+..++
T Consensus 160 ~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~ 194 (341)
T cd08262 160 TPGEVALVIGCGPIGLAVIAALKARGVGPIVASDF 194 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 4579999999999999999999999997 555543
No 443
>PRK06823 ornithine cyclodeaminase; Validated
Probab=76.83 E-value=3.8 Score=34.69 Aligned_cols=38 Identities=16% Similarity=-0.030 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHc-cCCC-EEEEEcCCCCCc
Q 044056 142 LGKTVFISGFGNIGVELAKRLR-PFGV-KIIAAKRSWASH 179 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~ 179 (189)
.-++++|+|.|..++.-++.+. .+.. +|..|+|++...
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a 166 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL 166 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH
Confidence 3589999999999998888775 5555 699999987654
No 444
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=76.66 E-value=4 Score=34.66 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=31.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS 175 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~ 175 (189)
...|+++.|+|-|.+|-++|..+...|.+ |....+.
T Consensus 169 ~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 169 PVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 44689999999999999999999888997 8877654
No 445
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.61 E-value=4 Score=34.14 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCC
Q 044056 115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
...++.-++.++-. .+.++.||++.|||-+. +|+-+|.+|..-|++|..+....
T Consensus 137 ~PcTp~avi~lL~~--------~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T 191 (284)
T PRK14170 137 VPCTPAGIIELIKS--------TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT 191 (284)
T ss_pred CCCCHHHHHHHHHH--------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 34456555555532 56799999999999987 59999999999999998766543
No 446
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=76.39 E-value=4 Score=39.99 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
-.+++|.|||-|.-|-..|..|...|.+|..+++...
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 4679999999999999999999999999999997643
No 447
>PRK12359 flavodoxin FldB; Provisional
Probab=76.03 E-value=3.7 Score=31.69 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=29.8
Q ss_pred CCCCCCEEEEEcCCHH-H---------HHHHHHHccCCCEEEEEcC
Q 044056 139 ETLLGKTVFISGFGNI-G---------VELAKRLRPFGVKIIAAKR 174 (189)
Q Consensus 139 ~~l~gktvGIvG~G~I-G---------~~vA~~l~afG~~V~~~~r 174 (189)
..|+||++++.|+|.- | ..+.++++..|++++++-+
T Consensus 75 ~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~ 120 (172)
T PRK12359 75 LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWP 120 (172)
T ss_pred CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEe
Confidence 3689999999999984 3 4688999999999987654
No 448
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=75.90 E-value=5.1 Score=32.46 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=31.6
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..|+++.|.|. |.+|+.+++.+++.|++|+...++.
T Consensus 138 ~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~ 174 (325)
T TIGR02824 138 KAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSD 174 (325)
T ss_pred CCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35789999995 9999999999999999998887654
No 449
>PLN02463 lycopene beta cyclase
Probab=75.89 E-value=4 Score=36.27 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=30.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
.-.|.|||.|.-|..+|..|..-|.+|..+++.+
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 3579999999999999999988899999999864
No 450
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=75.89 E-value=4.9 Score=37.35 Aligned_cols=92 Identities=15% Similarity=0.020 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcC---CCCCCCCC-CCCEEEEEcCC
Q 044056 77 NPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKH---IVPTGETL-LGKTVFISGFG 152 (189)
Q Consensus 77 p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~---~~~~~~~l-~gktvGIvG~G 152 (189)
|+-.++--.++| .-...+.+.|..|...+|.+. =-|+..+.+-...+.. +....... ....|.|||-|
T Consensus 198 ~~~~~~t~t~a~---~vr~~l~~~GF~v~~~~~~g~-----kr~~~~~~~~~~~~~~~~~~w~~~~~~~~~~dVvIIGaG 269 (662)
T PRK01747 198 PGATLATFTSAG---FVRRGLQEAGFTVRKVKGFGR-----KREMLVGELEQTLPAPLAAPWFARPGSPKARDAAIIGGG 269 (662)
T ss_pred CCCEEEEeehHH---HHHHHHHHcCCeeeecCCCch-----hhhhhhehhccccCCCCCCCcccCCCcCCCCCEEEECcc
Confidence 566666444443 334677889999999998732 1244444321111110 00001111 13589999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCC
Q 044056 153 NIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 153 ~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
-+|..+|..|..-|.+|..+++..
T Consensus 270 IaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 270 IAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCC
Confidence 999999999988899999999864
No 451
>PLN02527 aspartate carbamoyltransferase
Probab=75.71 E-value=18 Score=30.54 Aligned_cols=71 Identities=21% Similarity=0.130 Sum_probs=47.2
Q ss_pred HHhhCCeEEEecC-CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC---HHHHHHHHHHccC-CCEEE
Q 044056 96 ALTNCAIKAARIL-GDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG---NIGVELAKRLRPF-GVKII 170 (189)
Q Consensus 96 ~~~~~gI~v~n~~-g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G---~IG~~vA~~l~af-G~~V~ 170 (189)
.+..-.++|.|.- |....-.++.|+ ++.+.++ .+ .+.|++|+++|-+ +..+..+..+..| |++|.
T Consensus 113 ~a~~~~vPVINa~~g~~~HPtQ~LaD-----l~Ti~e~----~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~ 182 (306)
T PLN02527 113 AAATAEIPVINAGDGPGQHPTQALLD-----VYTIQRE----IG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIY 182 (306)
T ss_pred HHHhCCCCEEECCCCCCCChHHHHHH-----HHHHHHH----hC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEE
Confidence 3444679999984 331112234444 2233332 12 4889999999975 6889999988877 99999
Q ss_pred EEcCCC
Q 044056 171 AAKRSW 176 (189)
Q Consensus 171 ~~~r~~ 176 (189)
...|..
T Consensus 183 ~~~P~~ 188 (306)
T PLN02527 183 FVAPDV 188 (306)
T ss_pred EECCCc
Confidence 988754
No 452
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=75.68 E-value=4.6 Score=38.44 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=32.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
++++.|||-|.+|-++|..|+.+|++|..+.+.+..
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 689999999999999999999999999988876543
No 453
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=75.65 E-value=4 Score=40.69 Aligned_cols=41 Identities=29% Similarity=0.285 Sum_probs=36.4
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
+...=.|++|+|||-|.-|.+.|..|.-.|-.|..|.|+-+
T Consensus 1779 pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred CcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 34456799999999999999999999999999999998754
No 454
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=75.50 E-value=13 Score=31.37 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=51.2
Q ss_pred CcCChhHHhhC--CeEEEec-CCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC---CHHHHHHHHHHc
Q 044056 90 EGVDIDALTNC--AIKAARI-LGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF---GNIGVELAKRLR 163 (189)
Q Consensus 90 d~id~~~~~~~--gI~v~n~-~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~---G~IG~~vA~~l~ 163 (189)
++-.+..+.+. .++|.|. -|. +..++--++= ++.+... .+ .+.|++|.++|= +++....+..+.
T Consensus 111 ~~~~~~~~a~~~~~vPvINag~g~---~~HPtQaLaD--l~Ti~e~----~g-~l~g~~va~vGD~~~~rv~~Sl~~~~a 180 (310)
T PRK13814 111 ENETPEQIAKQLSSGVVINAGDGN---HQHPSQALID--LMTIKQH----KP-HWNKLCVTIIGDIRHSRVANSLMDGLV 180 (310)
T ss_pred chhHHHHHHHhCCCCCeEECCcCC---CCCchHHHHH--HHHHHHH----hC-CcCCcEEEEECCCCCCcHHHHHHHHHH
Confidence 33334444333 6999998 444 3344333222 2333332 12 478999999998 599999999999
Q ss_pred cCCC-EEEEEcCCC
Q 044056 164 PFGV-KIIAAKRSW 176 (189)
Q Consensus 164 afG~-~V~~~~r~~ 176 (189)
.||+ +|....|..
T Consensus 181 ~~g~~~v~~~~P~~ 194 (310)
T PRK13814 181 TMGVPEIRLVGPSS 194 (310)
T ss_pred HcCCCEEEEeCCcc
Confidence 9999 999988754
No 455
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=75.48 E-value=4.6 Score=39.34 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=32.4
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
....||+|.|||-|.+|-.+|+-+..+|.+|....+.
T Consensus 443 ~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 443 PEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 3457999999999999999999999999998776654
No 456
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.33 E-value=4 Score=34.84 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=35.3
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
..+..-+|.|+|.|-+|..-|+++.++|.+|...|.+.+.
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~r 203 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDR 203 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHH
Confidence 4567788999999999999999999999999999987443
No 457
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=74.51 E-value=2.6 Score=35.74 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=29.2
Q ss_pred CCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 143 GKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 143 gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
|.+|.|.| .|.+|....+.++++|.++++...+.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~ 177 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSS 177 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCH
Confidence 99999999 99999999999999997665555543
No 458
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=74.38 E-value=47 Score=29.02 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=60.5
Q ss_pred hcCCCeEEecCC-CCCH---HHHhcCCCCeEEEEcCCCCCc---CChhHHh-----hCC---eEEEecCCCCCCCchhHH
Q 044056 55 LYASYGTSEQMI-ASDS---NVITRANPMNLIIRFRVGLEG---VDIDALT-----NCA---IKAARILGDVSGNAASCA 119 (189)
Q Consensus 55 ~~~~advi~~~~-~~~~---~~l~~~p~Lk~I~~~~aG~d~---id~~~~~-----~~g---I~v~n~~g~~~~~a~~vA 119 (189)
.+.+.|+|++.. ++-+ +..++.|+.|+|...++-+.. -|++... +.+ |..+++||. ....-.
T Consensus 61 ~l~E~d~VfGg~~~L~~aI~~~~~~~p~p~~i~V~~tc~~~liGdDi~~v~~~~~~~~~~~~vi~v~tpgf---~g~~~~ 137 (415)
T cd01977 61 DMKESHVVFGGEKKLKKNIIEAFKEFPDIKRMTVYTTCTTALIGDDIKAVAKEVMEELPDVDIFVCNAPGF---AGPSQS 137 (415)
T ss_pred cCCccceeeccHHHHHHHHHHHHHhCCCCcEEEEECCCchhhhcCCHHHHHHHHHHhcCCCeEEEEeCCCc---CCcchh
Confidence 345667766542 2222 234556778887777766654 3544332 334 666778887 222212
Q ss_pred -HHHHHHHHHHHhcCCCC-CCCCCCCCEEEEEc----CCHHHHHHHHHHccCCCEEEE
Q 044056 120 -ELSIYLMLGLLRKHIVP-TGETLLGKTVFISG----FGNIGVELAKRLRPFGVKIIA 171 (189)
Q Consensus 120 -E~~l~liL~~~R~~~~~-~~~~l~gktvGIvG----~G~IG~~vA~~l~afG~~V~~ 171 (189)
-|.. ...++.+.+... ...+-..++|-|+| .|.+ .++-+.++.||.+|..
T Consensus 138 ~G~~~-a~~al~~~l~~~~~~~~~~~~~VNliG~~~~~~d~-~ei~~lL~~~Gl~v~~ 193 (415)
T cd01977 138 KGHHV-LNIAWINQKVGTVEPEITSDYTINYIGDYNIQGDT-EVLQKYFERMGIQVLS 193 (415)
T ss_pred HHHHH-HHHHHHHHhhCcCCcCcCCCCcEEEEccCCCcccH-HHHHHHHHHcCCeEEE
Confidence 1211 111223333211 11122357899998 3444 5788999999999964
No 459
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=74.22 E-value=34 Score=30.05 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=29.8
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEE
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~ 171 (189)
..+.||++.|.|-....-.+++.|..+||.|..
T Consensus 295 ~~l~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~ 327 (428)
T cd01965 295 FYLGGKRVAIAGDPDLLLGLSRFLLEMGAEPVA 327 (428)
T ss_pred HHhcCCEEEEEcChHHHHHHHHHHHHcCCcceE
Confidence 468899999999999999999999999998764
No 460
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=73.97 E-value=5.3 Score=39.22 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
-.+++|.|||-|..|-..|..|...|.+|..|++...
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~ 464 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHV 464 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 4689999999999999999999999999999997643
No 461
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=73.97 E-value=4.8 Score=35.74 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=30.6
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..|.|||.|.-|...|..|...|.+|+.+++..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 469999999999999999999999999999864
No 462
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=73.96 E-value=5.2 Score=37.08 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=34.3
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcccccccCC
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSS 187 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~ 187 (189)
.-|.|||-|-+|..+|..|..-|.+|..+++. ....+.+.-+|
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~-d~a~GtSsrss 114 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLRVGLVERE-DFSSGTSSRST 114 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecc-ccCCCcccchh
Confidence 45999999999999999999999999999986 33344444333
No 463
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.89 E-value=1.3 Score=42.12 Aligned_cols=46 Identities=33% Similarity=0.427 Sum_probs=39.0
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCCCcccc
Q 044056 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWASHSQV 182 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~~~~~ 182 (189)
..+.+.+..|.|.|+|..|.+||+-+-=-|.+ |..+|+.+-.....
T Consensus 31 AM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DL 77 (1013)
T KOG2012|consen 31 AMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDL 77 (1013)
T ss_pred HHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhh
Confidence 45678899999999999999999999988986 99999887654443
No 464
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=73.77 E-value=3.9 Score=36.59 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=29.1
Q ss_pred CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
+++.|||-|.||-++|..+..+|.+|..+.+.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 57999999999999999999999999888763
No 465
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=73.76 E-value=5.2 Score=38.51 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=31.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
++++.|||-|.+|-++|..|+.+|++|..+.+.+.
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ 179 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM 179 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 58899999999999999999999999998887654
No 466
>PRK06703 flavodoxin; Provisional
Probab=73.72 E-value=5.6 Score=29.43 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=26.4
Q ss_pred CCCCCEEEEEcCC--------HHHHHHHHHHccCCCEEEE
Q 044056 140 TLLGKTVFISGFG--------NIGVELAKRLRPFGVKIIA 171 (189)
Q Consensus 140 ~l~gktvGIvG~G--------~IG~~vA~~l~afG~~V~~ 171 (189)
.+.+|.++++|+| ..++.+.++|+..|++++.
T Consensus 79 ~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~ 118 (151)
T PRK06703 79 DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQ 118 (151)
T ss_pred CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcc
Confidence 4779999999986 4455699999999999865
No 467
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=73.48 E-value=4.6 Score=39.69 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccC-CCE-------------EEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPF-GVK-------------IIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~af-G~~-------------V~~~~r~~~~ 178 (189)
..|+|+|||.|.||+.+|+.|... +.+ |...|++...
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~ 618 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKD 618 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHH
Confidence 478999999999999999999643 334 7778876543
No 468
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=73.47 E-value=5.5 Score=36.96 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=32.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHccC-CCEEEEEcCCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRPF-GVKIIAAKRSWAS 178 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~af-G~~V~~~~r~~~~ 178 (189)
...|.|||.|..|..+|-.|..+ |.+|..+++.+..
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~ 68 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR 68 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence 45799999999999999999997 9999999987644
No 469
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=73.45 E-value=4.6 Score=38.14 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=31.5
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS 175 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~ 175 (189)
...||+|.|||-|.+|-.+|+.+..+|.+ |..+.+.
T Consensus 567 ~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 567 IKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 35689999999999999999999999997 8776654
No 470
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=73.18 E-value=4.8 Score=33.93 Aligned_cols=34 Identities=18% Similarity=0.049 Sum_probs=24.2
Q ss_pred CEEEEEcCCHHHHHHHHHHc-cCCC-EEEEEcCCCC
Q 044056 144 KTVFISGFGNIGVELAKRLR-PFGV-KIIAAKRSWA 177 (189)
Q Consensus 144 ktvGIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~ 177 (189)
+++||+|.|..|+.-++.+. .|+. +|..|+|++.
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~ 164 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPE 164 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChh
Confidence 69999999999999988886 5776 5999999864
No 471
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.00 E-value=5.6 Score=33.26 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
..++.-++.++=. .+.++.||++.|||-+. +|+-+|.+|..-|++|.....+.+
T Consensus 138 PcTp~avi~lL~~--------y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~ 192 (282)
T PRK14166 138 PCTPLGVMKLLKA--------YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK 192 (282)
T ss_pred CCCHHHHHHHHHH--------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence 4455555554432 46689999999999987 599999999989999988776543
No 472
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=73.00 E-value=15 Score=31.61 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=31.3
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHccC-CC-EEEEEcCCC
Q 044056 139 ETLLGKTVFISGFGNIGVELAKRLRPF-GV-KIIAAKRSW 176 (189)
Q Consensus 139 ~~l~gktvGIvG~G~IG~~vA~~l~af-G~-~V~~~~r~~ 176 (189)
.......|.|||-|-+|..+|..|... |. +|..+++..
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 344566799999999999999988764 84 899999864
No 473
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=72.52 E-value=6.3 Score=34.34 Aligned_cols=40 Identities=20% Similarity=0.112 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCC----------HHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056 141 LLGKTVFISGFG----------NIGVELAKRLRPFGVKIIAAKRSWASHS 180 (189)
Q Consensus 141 l~gktvGIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~~ 180 (189)
..|++|+|+|+. .-...+++.|..-|.+|.+|||..+...
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~ 343 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS 343 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh
Confidence 368999999994 5678999999999999999999865543
No 474
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=72.30 E-value=4.1 Score=32.58 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 140 TLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 140 ~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
.+..|...|-|-| .|||++++++..-|++|...|.....
T Consensus 11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~ 50 (256)
T KOG1200|consen 11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAA 50 (256)
T ss_pred HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhh
Confidence 3455666777766 49999999999999999999876543
No 475
>PRK06199 ornithine cyclodeaminase; Validated
Probab=72.12 E-value=5.4 Score=34.69 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=30.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHcc-CC-C-EEEEEcCCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLRP-FG-V-KIIAAKRSWAS 178 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~a-fG-~-~V~~~~r~~~~ 178 (189)
-+++||+|.|..++.-++.+.. +. . +|..|+|++..
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~ 193 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKS 193 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHH
Confidence 5899999999999999988875 53 4 79999998654
No 476
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.76 E-value=6.8 Score=32.94 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=35.5
Q ss_pred CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056 137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+.++.||++.|||-+. +|+-+|.+|..-|++|..+....+
T Consensus 154 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~ 195 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATR 195 (294)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCC
Confidence 46689999999999987 599999999999999988876544
No 477
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=71.70 E-value=7.8 Score=34.45 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKR 174 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r 174 (189)
...+++|.|||-|.+|-.+|+.+...|. +|...++
T Consensus 278 ~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~ 313 (471)
T PRK12810 278 SAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDI 313 (471)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccc
Confidence 4568999999999999999998888887 5764443
No 478
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.52 E-value=6.2 Score=32.93 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=35.1
Q ss_pred CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056 137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
...++.||++.|||-+. +|+-+|.+|..-|++|...+...+
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~ 193 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTK 193 (278)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC
Confidence 45689999999999986 599999999999999988875443
No 479
>PRK07308 flavodoxin; Validated
Probab=71.05 E-value=4.9 Score=29.59 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCCCCEEEEEcCC--------HHHHHHHHHHccCCCEEEE
Q 044056 140 TLLGKTVFISGFG--------NIGVELAKRLRPFGVKIIA 171 (189)
Q Consensus 140 ~l~gktvGIvG~G--------~IG~~vA~~l~afG~~V~~ 171 (189)
.++|+.++++|+| ..++.+.++++.+|++++.
T Consensus 79 ~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~ 118 (146)
T PRK07308 79 DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGA 118 (146)
T ss_pred CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEcc
Confidence 5789999999995 6788899999999998754
No 480
>PRK07589 ornithine cyclodeaminase; Validated
Probab=70.88 E-value=6.4 Score=33.83 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=29.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHc-cCCC-EEEEEcCCCCC
Q 044056 143 GKTVFISGFGNIGVELAKRLR-PFGV-KIIAAKRSWAS 178 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~ 178 (189)
-++++|+|.|..++.-++.+. -+.. +|..|+|++..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~ 166 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAA 166 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHH
Confidence 489999999999988877554 6666 59999998654
No 481
>PTZ00367 squalene epoxidase; Provisional
Probab=70.82 E-value=11 Score=34.67 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
....|.|||.|-.|..+|..|..-|.+|..+++..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35679999999999999999999999999999975
No 482
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=70.78 E-value=7.6 Score=36.30 Aligned_cols=143 Identities=18% Similarity=0.132 Sum_probs=70.2
Q ss_pred CCcceEEEeCCCCCCchhHHHHHhhcc-------cCceeeeCch-----hHHhhcCCCeE-EecCCCCCHH-HHhcC---
Q 044056 14 KSITLVLFRGPHFPASHNYAKGYLQNY-------LSIKGLCFFL-----SMHSLYASYGT-SEQMIASDSN-VITRA--- 76 (189)
Q Consensus 14 ~~~~~ilv~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~-----~~~~~~~~adv-i~~~~~~~~~-~l~~~--- 76 (189)
+..|+|+|+.+.... . .+.+.++.. |-+++.+.+. .....+.++|. |+.+ +--.+ +++.+
T Consensus 1 ~~~~~VLVTRp~~qa-~-~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS-~nAV~~~~~~l~~~ 77 (656)
T PRK06975 1 ARAFTVVVTRPDGQS-A-ALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVS-PNAVDRALARLDAI 77 (656)
T ss_pred CCCCEEEEeCcHhHH-H-HHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEEC-HHHHHHHHHHHHhh
Confidence 356899999987432 2 233445442 2222222221 12245678888 4422 21111 12221
Q ss_pred --CCCeEEEEcCCCCCcCChhHHhhCCeEEEec----CCCCC-C-CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEE
Q 044056 77 --NPMNLIIRFRVGLEGVDIDALTNCAIKAARI----LGDVS-G-NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFI 148 (189)
Q Consensus 77 --p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~----~g~~~-~-~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGI 148 (189)
.+++++ +.|-++ ..++.++||.+.-. |..+. + .....+|-.+.++.... ..+.|++|.|
T Consensus 78 ~~~~~~i~-AVG~~T----a~aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~--------~~~~g~rVLi 144 (656)
T PRK06975 78 WPHALPVA-VVGPGS----VAALARHGIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAF--------GALAGKRVLI 144 (656)
T ss_pred CccCCeEE-EECHHH----HHHHHHcCCCCceeeccccccccCCCCCccchHHHHHhHHHhc--------cCCCCCEEEE
Confidence 244443 333322 23567888865433 21000 0 01223444444433210 1246899999
Q ss_pred EcCCHHHH-HHHHHHccCCCEEEEEc
Q 044056 149 SGFGNIGV-ELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 149 vG~G~IG~-~vA~~l~afG~~V~~~~ 173 (189)
+. |..|+ .+++.|+..|++|..+.
T Consensus 145 ~r-G~~gr~~L~~~L~~~Ga~V~~v~ 169 (656)
T PRK06975 145 VR-GDGGREWLAERLREAGAEVELVE 169 (656)
T ss_pred Ec-CCCCcHHHHHHHHHCCCEEEEEe
Confidence 65 77666 58888998898865433
No 483
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=70.77 E-value=13 Score=32.90 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=30.9
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~ 173 (189)
...|.||++.|.+-+...-.+++.++.+||+|.+..
T Consensus 321 ~~~L~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~ 356 (456)
T TIGR01283 321 RERLKGKKAAIYTGGVKSWSLVSALQDLGMEVVATG 356 (456)
T ss_pred HHHcCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEe
Confidence 456889999998878888889999999999988874
No 484
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=70.66 E-value=4.4 Score=32.55 Aligned_cols=26 Identities=12% Similarity=0.264 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056 150 GFGNIGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 150 G~G~IG~~vA~~l~afG~~V~~~~r~ 175 (189)
.-|.||+++|+.|...|++|...++.
T Consensus 23 SSGgIG~AIA~~la~~Ga~Vvlv~~~ 48 (227)
T TIGR02114 23 STGHLGKIITETFLSAGHEVTLVTTK 48 (227)
T ss_pred cccHHHHHHHHHHHHCCCEEEEEcCh
Confidence 45899999999999999999988753
No 485
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=70.64 E-value=7.6 Score=36.42 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
+-...+|.|||-|-.|..+|..|+..|.+|..|.+.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4566889999999999999999999999999999865
No 486
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=70.50 E-value=6.5 Score=36.60 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056 141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS 175 (189)
Q Consensus 141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~ 175 (189)
..|++|.|||-|.+|-.+|+.+..+|.+ |..+.+.
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4589999999999999999999999984 6665544
No 487
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=70.38 E-value=49 Score=29.12 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=29.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173 (189)
Q Consensus 140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~ 173 (189)
.+.||++.|+|-....-.+++.|..+||++..+-
T Consensus 297 ~l~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~ 330 (429)
T cd03466 297 YNFGRKAAIYGEPDFVVAITRFVLENGMVPVLIA 330 (429)
T ss_pred hcCCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4789999999988899999999999999974443
No 488
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.35 E-value=7.1 Score=32.70 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056 137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+.++.||++.|||-+. +|+-+|.+|..-|++|...+...+
T Consensus 153 y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~ 194 (284)
T PRK14177 153 YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ 194 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence 46789999999999986 599999999999999999875544
No 489
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=70.14 E-value=7.3 Score=34.76 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=26.5
Q ss_pred CEEEEEcC-CHHHHHHHHHHccC--CCEEEEEcCC
Q 044056 144 KTVFISGF-GNIGVELAKRLRPF--GVKIIAAKRS 175 (189)
Q Consensus 144 ktvGIvG~-G~IG~~vA~~l~af--G~~V~~~~r~ 175 (189)
|+|+|+|. |.||+...+.++.+ .++|.+..-.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag 92 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG 92 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECC
Confidence 89999999 99999999987754 6778776543
No 490
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.09 E-value=7.7 Score=32.45 Aligned_cols=52 Identities=25% Similarity=0.219 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCC
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~ 175 (189)
..++.-++.++=. .+.++.||++.|||-+. +|+-+|.+|..-|++|......
T Consensus 137 PcTp~avi~lL~~--------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~ 189 (282)
T PRK14169 137 ASTPYGIMALLDA--------YDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK 189 (282)
T ss_pred CCCHHHHHHHHHH--------hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC
Confidence 4556655555533 46689999999999987 5999999999999999877543
No 491
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=70.07 E-value=47 Score=25.40 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=54.2
Q ss_pred CcceEEEeCCCCCCchhHHHHHhhcc-cCceeeeCch-hHHhhcCCCeE-EecC---CCCCHHHHhcCCCCeEEEEcCCC
Q 044056 15 SITLVLFRGPHFPASHNYAKGYLQNY-LSIKGLCFFL-SMHSLYASYGT-SEQM---IASDSNVITRANPMNLIIRFRVG 88 (189)
Q Consensus 15 ~~~~ilv~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~adv-i~~~---~~~~~~~l~~~p~Lk~I~~~~aG 88 (189)
.-.+|+|.+.-. .........|... ..+.+..... ++.+.++++|+ +... .-++++.++ +-.+|.=.+.-
T Consensus 43 ~gk~vlViG~G~-~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~---~~~viIDla~p 118 (168)
T cd01080 43 AGKKVVVVGRSN-IVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVK---PGAVVIDVGIN 118 (168)
T ss_pred CCCEEEEECCcH-HHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCceecHHHcc---CCeEEEEccCC
Confidence 447888888742 1122233444332 2344444443 77788999999 4432 135666543 23566666665
Q ss_pred CC----------cCChhHHhhCCeEEEecCCC
Q 044056 89 LE----------GVDIDALTNCAIKAARILGD 110 (189)
Q Consensus 89 ~d----------~id~~~~~~~gI~v~n~~g~ 110 (189)
-| .+|.+.+.++-..++-.||-
T Consensus 119 rdvd~~~~~~~G~~d~~~~~~~~~~~~~~pgg 150 (168)
T cd01080 119 RVPDKSGGKLVGDVDFESAKEKASAITPVPGG 150 (168)
T ss_pred CcccccCCCeeCCcCHHHHHhhccCcCCCCCc
Confidence 43 27888888887777777775
No 492
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=70.06 E-value=7.5 Score=32.79 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=35.2
Q ss_pred CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056 137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~ 177 (189)
.+.++.||++.|||-+. +|+-+|.+|..-|++|.......+
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~ 202 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTP 202 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC
Confidence 46799999999999987 599999999988999988865443
No 493
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=69.84 E-value=11 Score=29.87 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=29.2
Q ss_pred CCEEEEEcCCH---HHHHHHHHHccCCCEEEEEcCC
Q 044056 143 GKTVFISGFGN---IGVELAKRLRPFGVKIIAAKRS 175 (189)
Q Consensus 143 gktvGIvG~G~---IG~~vA~~l~afG~~V~~~~r~ 175 (189)
..+|-|.|.|+ ||+.+|.+|...|.+++++.|.
T Consensus 39 ~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ 74 (202)
T COG0794 39 KGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPA 74 (202)
T ss_pred CCcEEEEcCChhHHHHHHHHHHHHccCCceEEecCc
Confidence 46789999986 8899999999999999999865
No 494
>PLN02735 carbamoyl-phosphate synthase
Probab=69.36 E-value=5.9 Score=39.28 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.2
Q ss_pred CCEEEEEcCCHH-----------HHHHHHHHccCCCEEEEEcCCCC
Q 044056 143 GKTVFISGFGNI-----------GVELAKRLRPFGVKIIAAKRSWA 177 (189)
Q Consensus 143 gktvGIvG~G~I-----------G~~vA~~l~afG~~V~~~~r~~~ 177 (189)
=|+|.|+|-|.| |..+++.|+..|.+|+..|+.+.
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~ 68 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPA 68 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcc
Confidence 479999999995 77799999999999999998764
No 495
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=69.23 E-value=6.5 Score=31.81 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=28.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056 143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH 179 (189)
Q Consensus 143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~ 179 (189)
..-|.|||.|.-|...|..|...|.||..+.+....-
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~G 53 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPG 53 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-B
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 3558999999999999999998899999999876543
No 496
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=69.22 E-value=5.3 Score=29.03 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=30.1
Q ss_pred CCCCCCCEEEEEcCC--------HHHHHHHHHHccCCCEEEE
Q 044056 138 GETLLGKTVFISGFG--------NIGVELAKRLRPFGVKIIA 171 (189)
Q Consensus 138 ~~~l~gktvGIvG~G--------~IG~~vA~~l~afG~~V~~ 171 (189)
...+.+++.+|+|+| ..++.+.++|+.+|++++.
T Consensus 82 ~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~ 123 (143)
T PF00258_consen 82 KPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVG 123 (143)
T ss_dssp GSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEES
T ss_pred ccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEE
Confidence 456889999999999 6899999999999999875
No 497
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=69.13 E-value=7.7 Score=31.68 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056 142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178 (189)
Q Consensus 142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 178 (189)
....|.|||-|..|...|..|...|.+|+..++....
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3456999999999999999999999999999987643
No 498
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.79 E-value=8.4 Score=32.47 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCC
Q 044056 116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSW 176 (189)
Q Consensus 116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~ 176 (189)
..++.-++-++=. .+.++.||++.|||-+. +|+-+|.+|..-|++|..+....
T Consensus 139 PcTp~aii~lL~~--------~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T 192 (297)
T PRK14186 139 SCTPAGVMRLLRS--------QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT 192 (297)
T ss_pred CCCHHHHHHHHHH--------hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence 4455555544433 46799999999999987 59999999999999998876543
No 499
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=68.67 E-value=6.6 Score=34.99 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=30.5
Q ss_pred CEEEEEcC-CHHHHHHHHHHccC-------CC--EEEEEcCCCCCcccc
Q 044056 144 KTVFISGF-GNIGVELAKRLRPF-------GV--KIIAAKRSWASHSQV 182 (189)
Q Consensus 144 ktvGIvG~-G~IG~~vA~~l~af-------G~--~V~~~~r~~~~~~~~ 182 (189)
.+|+|+|. |+||..+|-.+..- |. +++.+|+......+.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~ 149 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGV 149 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHH
Confidence 68999999 99999999988543 33 788888876655443
No 500
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=68.40 E-value=3 Score=32.71 Aligned_cols=65 Identities=23% Similarity=0.199 Sum_probs=44.6
Q ss_pred hhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC---CCCCCCCCCCEEEEEcCCHHHHH-HHHHHccCCCEE
Q 044056 94 IDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI---VPTGETLLGKTVFISGFGNIGVE-LAKRLRPFGVKI 169 (189)
Q Consensus 94 ~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~---~~~~~~l~gktvGIvG~G~IG~~-vA~~l~afG~~V 169 (189)
+..+.++|+.+-..+.. . ...+.| +-++. ......++.++|.|+|+|.+|.+ ++..|.+.|.++
T Consensus 65 L~~L~~~G~l~~~~~~~---~-~~~~~f--------~~~~g~~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~ 132 (193)
T TIGR03882 65 LDRLERRGYLVEDAPEL---P-PAAAAF--------WSGLGVDPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRI 132 (193)
T ss_pred HHHHHHCCCEeccCCCC---C-HHHHHH--------HHHcCCCHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCc
Confidence 45678889888766543 1 222222 11111 22345788999999999999999 999999999876
Q ss_pred E
Q 044056 170 I 170 (189)
Q Consensus 170 ~ 170 (189)
.
T Consensus 133 ~ 133 (193)
T TIGR03882 133 A 133 (193)
T ss_pred c
Confidence 5
Done!