BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044059
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 134/223 (60%), Gaps = 4/223 (1%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWSGRIWGRQGCRFD 61
A++ NNC +WPG L G P + GF+L+S +D P WSGR WGR C D
Sbjct: 1 AKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTD 60
Query: 62 SNGKGSCDTGDC-SAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
+ GK +C+T DC S Q+ C G G PPAT+VE+T+ ++ +YDVSLVDGFNLP+S+
Sbjct: 61 AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGG-QDYYDVSLVDGFNLPMSVA 119
Query: 121 PVGGGIGCGVASCDADLNICCPSALEXXXXXXXXXX-XSACLAMQSAKYCCTGQYANPKT 179
P GG C +SC A++N CP+ L+ SACLA +KYCCT P+T
Sbjct: 120 PQGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPET 179
Query: 180 CKPTLFANLFKAICPKAYSYAFDDSSSLNKCRAS-RYVITFCP 221
C PT ++ +F+ CP+AYSYA+DD +S C YVITFCP
Sbjct: 180 CPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 176 bits (446), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 121/223 (54%), Gaps = 4/223 (1%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWSGRIWGRQGCRFD 61
A + NNC +WPG L P + GF+L+S LD P W+GR W R GC D
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTD 60
Query: 62 SNGKGSCDTGDC-SAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
++GK C T DC S Q+ C G G PPAT+ E + + FYDVSLVDGFNLP+S+
Sbjct: 61 ASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGG-QDFYDVSLVDGFNLPMSVT 119
Query: 121 PVGGGIGCGVASCDADLNICCPSALEXXXXXXXXXX-XSACLAMQSAKYCCTGQYANPKT 179
P GG C ASC A++N CPS L+ SAC+ + +YCCT P+T
Sbjct: 120 PQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPET 179
Query: 180 CKPTLFANLFKAICPKAYSYAFDDSSSLNKCRAS-RYVITFCP 221
C PT ++ +F CP AYSYA+DD C Y ITFCP
Sbjct: 180 CPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 115/222 (51%), Gaps = 26/222 (11%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDV-PEKWSGRIWGRQGCRF 60
A ++N C +W G GG +L SG+ + V P + RIWGR C F
Sbjct: 1 ATFDILNKCTYTVWAAASPG--------GGRRLDSGQSWTITVNPGTTNARIWGRTSCTF 52
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
D+NG+G C+TGDC+ L CQG G+PP T+ E L + + L + D+SLVDGFN+P+
Sbjct: 53 DANGRGKCETGDCNGLLECQGY-GSPPNTLAEFAL-NQPNNLDYIDISLVDGFNIPMDFS 110
Query: 121 PVGGGIGCGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKTC 180
GC C D+N CPS L+ + C ++ +YCCT P +C
Sbjct: 111 ------GCRGIQCSVDINGQCPSELK-----APGGCNNPCTVFKTNEYCCT---DGPGSC 156
Query: 181 KPTLFANLFKAICPKAYSYAFDDSSSLNKC-RASRYVITFCP 221
PT ++ FK CP AYSY DD +SL C + Y +TFCP
Sbjct: 157 GPTTYSKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 116/223 (52%), Gaps = 20/223 (8%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPE-KWSGRIWGRQGCRF 60
A VVN C +W + P GG +L+ GE + P + RIW R GC+F
Sbjct: 1 AVFTVVNQCPFTVWAASV-------PVGGGRQLNRGESWRITAPAGTTAARIWARTGCKF 53
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
D++G+GSC TGDC L C G G A P T+ E L + L F+D+SL+DGFN+P+S
Sbjct: 54 DASGRGSCRTGDCGGVLQCTGYGRA-PNTLAEYAL-KQFNNLDFFDISLIDGFNVPMSFL 111
Query: 121 PVGGGIGCGVA-SCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKT 179
P GG GC C D+N CP+ L +AC + +YCC G AN
Sbjct: 112 P-DGGSGCSRGPRCAVDVNARCPAELR-----QDGVCNNACPVFKKDEYCCVGSAAN--D 163
Query: 180 CKPTLFANLFKAICPKAYSYAFDDSSSLNKCRA-SRYVITFCP 221
C PT ++ FK CP AYSY DD++S C A + Y + FCP
Sbjct: 164 CHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 112/222 (50%), Gaps = 24/222 (10%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWSG-RIWGRQGCRF 60
A +VN C +W + G GG +L+ G+ ++V +G RIWGR GC F
Sbjct: 1 ATFEIVNRCSYTVWAAAVPG--------GGRQLNQGQSWTINVNAGTTGGRIWGRTGCSF 52
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
D +G+G C TGDC L C G PP T+ E L + + L F+D+SLVDGFN+P+
Sbjct: 53 DGSGRGRCQTGDCGGVLSCTAYGN-PPNTLAEFAL-NQFNNLDFFDISLVDGFNVPMDFS 110
Query: 121 PVGGGIGCGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKTC 180
P G GC C AD+N CP AL+ + C ++ +YCC N C
Sbjct: 111 PTSG--GCRGIRCAADINGQCPGALK-----APGGCNNPCTVFKTDQYCC-----NSGAC 158
Query: 181 KPTLFANLFKAICPKAYSYAFDDSSSLNKC-RASRYVITFCP 221
PT ++ FK CP AYSY DD ++ C + Y + FCP
Sbjct: 159 SPTDYSQFFKRNCPDAYSYPKDDQTTTFTCPGGTNYRVVFCP 200
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 111/224 (49%), Gaps = 23/224 (10%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWS-GRIWGRQGCRF 60
A + V NNC +W TP GG +L+ G+ V++ P RIWGR GC F
Sbjct: 1 ATIEVRNNCPYTVW-------AASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNF 53
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
++ G+G+C TGDC L C G G PP T+ E L S L F+D+SLVDGFN+P++
Sbjct: 54 NAAGRGTCQTGDCGGVLQCTGW-GKPPNTLAEYAL-DQFSNLDFWDISLVDGFNIPMTFA 111
Query: 121 PVG-GGIGCGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKT 179
P G C C A++N CP AL+ + C +YCCT
Sbjct: 112 PTKPSGGKCHAIHCTANINGECPRALK-----VPGGCNNPCTTFGGQQYCCT-----QGP 161
Query: 180 CKPTLFANLFKAICPKAYSYAFDDSSSLNKCR--ASRYVITFCP 221
C PT + FK CP AYSY DD +S C ++ Y + FCP
Sbjct: 162 CGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 108/224 (48%), Gaps = 23/224 (10%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWS-GRIWGRQGCRF 60
A + V NNC +W TP GG +L G+ V++ P R+WGR C F
Sbjct: 1 ATIEVRNNCPYTVW-------AASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNF 53
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
++ G+G+C TGDC L C G G PP T+ E L S L F+D+SLVDGFN+P++
Sbjct: 54 NAAGRGTCQTGDCGGVLQCTGW-GKPPNTLAEYAL-DQFSGLDFWDISLVDGFNIPMTFA 111
Query: 121 PVG-GGIGCGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKT 179
P G C C A++N CP L + C +YCCT
Sbjct: 112 PTNPSGGKCHAIHCTANINGECPRELR-----VPGGCNNPCTTFGGQQYCCT-----QGP 161
Query: 180 CKPTLFANLFKAICPKAYSYAFDDSSSLNKCR--ASRYVITFCP 221
C PT F+ FK CP AYSY DD +S C ++ Y + FCP
Sbjct: 162 CGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 108/221 (48%), Gaps = 17/221 (7%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDV-PEKWSGRIWGRQGCRF 60
A +VN C +W G + GG +L+SGE ++V P G+IW R C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYF 58
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
D +G+G C TGDC L C+ G PP T+ E +L + D+S + GFN+P+
Sbjct: 59 DDSGRGICRTGDCGGLLQCK-RFGRPPTTLAEFSLNQYGK--DYIDISNIKGFNVPMDFS 115
Query: 121 PVGGGIGCGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKTC 180
P GC C AD+ CP+ L+ AC Q+++YCCT C
Sbjct: 116 PT--TRGCRGVRCAADIVGQCPAKLK----APGGGCNDACTVFQTSEYCCT-----TGKC 164
Query: 181 KPTLFANLFKAICPKAYSYAFDDSSSLNKCRASRYVITFCP 221
PT ++ FK +CP A+SY D +++ +S Y +TFCP
Sbjct: 165 GPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 107/221 (48%), Gaps = 17/221 (7%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDV-PEKWSGRIWGRQGCRF 60
A +VN C +W G + GG +L+SGE ++V P G+IW R C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYF 58
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
D +G G C TGDC L C+ G PP T+ E +L + D+S + GFN+P+
Sbjct: 59 DDSGSGICKTGDCGGLLRCK-RFGRPPTTLAEFSLNQYGK--DYIDISNIKGFNVPMDFS 115
Query: 121 PVGGGIGCGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKTC 180
P GC C AD+ CP+ L+ AC Q+++YCCT C
Sbjct: 116 PT--TRGCRGVRCAADIVGQCPAKLK----APGGGCNDACTVFQTSEYCCT-----TGKC 164
Query: 181 KPTLFANLFKAICPKAYSYAFDDSSSLNKCRASRYVITFCP 221
PT ++ FK +CP A+SY D +++ +S Y +TFCP
Sbjct: 165 GPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 108/221 (48%), Gaps = 17/221 (7%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDV-PEKWSGRIWGRQGCRF 60
A +VN C +W G + GG +L+SGE ++V P G+IW R C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
D +G G C TGDC L C+ G PP T+ E +L + D+S + GFN+P++
Sbjct: 59 DDSGSGICKTGDCGGLLRCK-RFGRPPTTLAEFSLNQYGK--DYIDISNIKGFNVPMNFS 115
Query: 121 PVGGGIGCGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKTC 180
P GC C AD+ CP+ L+ AC Q+++YCCT C
Sbjct: 116 PT--TRGCRGVRCAADIVGQCPAKLK----APGGGCNDACTVFQTSEYCCT-----TGKC 164
Query: 181 KPTLFANLFKAICPKAYSYAFDDSSSLNKCRASRYVITFCP 221
PT ++ FK +CP A+SY D +++ +S Y +TFCP
Sbjct: 165 GPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 108/221 (48%), Gaps = 17/221 (7%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDV-PEKWSGRIWGRQGCRF 60
A +VN C +W G + GG +L+SGE ++V P G+IW R C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
D +G G C TGDC L C+ G PP T+ E +L + D+S + GFN+P++
Sbjct: 59 DDSGSGICKTGDCGGLLRCK-RFGRPPTTLAEFSLNQYGK--DYIDISNIKGFNVPMNFS 115
Query: 121 PVGGGIGCGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKTC 180
P GC C AD+ CP+ L+ AC Q+++YCCT C
Sbjct: 116 PT--TRGCRGVRCAADIVGQCPAKLK----APGGGCNDACTVFQTSEYCCT-----TGKC 164
Query: 181 KPTLFANLFKAICPKAYSYAFDDSSSLNKCRASRYVITFCP 221
PT ++ FK +CP A+SY D +++ +S Y +TFCP
Sbjct: 165 GPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 107/221 (48%), Gaps = 17/221 (7%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDV-PEKWSGRIWGRQGCRF 60
A +VN C +W G + GG +L+SGE ++V P G+IW R C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
D +G G C TGDC L C+ G PP T+ E +L + D+S + GFN+P+
Sbjct: 59 DDSGSGICKTGDCGGLLRCK-RFGRPPTTLAEFSLNQYGK--DYIDISNIKGFNVPMDFS 115
Query: 121 PVGGGIGCGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKTC 180
P GC C AD+ CP+ L+ AC Q+++YCCT C
Sbjct: 116 PT--TRGCRGVRCAADIVGQCPAKLK----APGGGCNDACTVFQTSEYCCT-----TGKC 164
Query: 181 KPTLFANLFKAICPKAYSYAFDDSSSLNKCRASRYVITFCP 221
PT ++ FK +CP A+SY D +++ +S Y +TFCP
Sbjct: 165 GPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 104/220 (47%), Gaps = 23/220 (10%)
Query: 6 VVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWS-GRIWGRQGCRFDSNG 64
V NNC +W TP GG +L G+ P RIWGR C FD G
Sbjct: 6 VHNNCPYTVWAAA-------TPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAG 58
Query: 65 KGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMKPVGG 124
+G C TGDC L C+G G PP T+ E L + S L F+D+S++DGFN+P+S P
Sbjct: 59 RGWCQTGDCGGVLECKGW-GKPPNTLAEYAL-NQFSNLDFWDISVIDGFNIPMSFGPTKP 116
Query: 125 GIG-CGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKTCKPT 183
G G C C A++N CP +L + C +YCCT C PT
Sbjct: 117 GPGKCHGIQCTANINGECPGSLR-----VPGGCNNPCTTFGGQQYCCT-----QGPCGPT 166
Query: 184 LFANLFKAICPKAYSYAFDDSSSLNKCRA--SRYVITFCP 221
+ FK CP AYSY DD +S C + + Y + FCP
Sbjct: 167 ELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 107/221 (48%), Gaps = 17/221 (7%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDV-PEKWSGRIWGRQGCRF 60
A +VN C +W G + GG +L+SGE ++V P G+IW R C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXF 58
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
D +G G C TGDC L C+ G PP T+ E +L + D+S + GFN+P++
Sbjct: 59 DDSGSGICKTGDCGGLLRCK-RFGRPPTTLAEFSLNQXGK--DYIDISNIKGFNVPMNFS 115
Query: 121 PVGGGIGCGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKTC 180
P GC C AD+ CP+ L+ AC Q+++YCCT C
Sbjct: 116 PT--TRGCRGVRCAADIVGQCPAKLK----APGGGCNDACTVFQTSEYCCT-----TGKC 164
Query: 181 KPTLFANLFKAICPKAYSYAFDDSSSLNKCRASRYVITFCP 221
PT + FK +CP A+SY D +++ +S Y +TFCP
Sbjct: 165 GPTEXSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 106/221 (47%), Gaps = 17/221 (7%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDV-PEKWSGRIWGRQGCRF 60
A +VN C +W G + GG +L+SGE ++V P G+IW R C F
Sbjct: 1 ATFEIVNRCSXTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXF 58
Query: 61 DSNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMK 120
D +G G C TGDC L C+ G PP T+ E +L D+S + GFN+P++
Sbjct: 59 DDSGSGICKTGDCGGLLRCK-RFGRPPTTLAEFSLNQXGK--DXIDISNIKGFNVPMNFS 115
Query: 121 PVGGGIGCGVASCDADLNICCPSALEXXXXXXXXXXXSACLAMQSAKYCCTGQYANPKTC 180
P GC C AD+ CP+ L+ AC Q+++YCCT C
Sbjct: 116 PT--TRGCRGVRCAADIVGQCPAKLK----APGGGCNDACTVFQTSEYCCT-----TGKC 164
Query: 181 KPTLFANLFKAICPKAYSYAFDDSSSLNKCRASRYVITFCP 221
PT + FK +CP A+SY D +++ +S Y +TFCP
Sbjct: 165 GPTEXSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWSGRIWGRQGCRFD 61
A L + N C +WP + A GG +L G LD P S IWGR GC FD
Sbjct: 1 APLTITNRCHFTVWPAV---ALVLAQGGGGTELHPGASWSLDTPVIGSQYIWGRTGCSFD 57
Query: 62 SNGKGSCDTGDCSAQLHCQGTGGAPPATVVEMTLGSSASPLHFYDV-SLVDGFNLPVSMK 120
GKG C TGDC G A P T+ E+++ + Y V S + GFN+P+++K
Sbjct: 58 RAGKGRCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQGN---YTYGVTSTLKGFNVPMNLK 114
Query: 121 -PVGGGIGCGVASCD 134
G + C A CD
Sbjct: 115 CSSGDALPCRKAGCD 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,187,951
Number of Sequences: 62578
Number of extensions: 302597
Number of successful extensions: 606
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 20
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)