Query 044059
Match_columns 223
No_of_seqs 161 out of 668
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 11:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 6.6E-90 1.4E-94 594.1 19.3 217 3-220 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 5.4E-88 1.2E-92 582.1 18.1 216 4-221 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 3.2E-86 7E-91 573.1 18.0 212 4-221 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 1.9E-83 4.2E-88 553.2 8.2 212 8-221 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 3.6E-63 7.8E-68 408.7 14.9 155 4-220 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 5.9E-55 1.3E-59 358.1 14.3 149 4-221 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 3.2E-54 7E-59 354.3 14.3 152 4-219 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 97.9 0.00017 3.7E-09 59.8 10.4 47 86-135 72-121 (155)
9 cd09216 GH64-LPHase-like glyco 96.7 0.0066 1.4E-07 56.5 7.8 110 3-123 2-143 (353)
10 cd09220 GH64-GluB-like glycosi 95.8 0.049 1.1E-06 51.0 8.7 112 3-123 2-146 (369)
11 cd09214 GH64-like glycosyl hyd 76.2 1.7 3.7E-05 40.1 2.0 32 89-123 124-155 (319)
12 PF06282 DUF1036: Protein of u 73.5 5 0.00011 31.5 3.8 41 2-42 4-44 (115)
13 cd09214 GH64-like glycosyl hyd 70.7 4 8.7E-05 37.7 3.1 36 183-218 276-317 (319)
14 cd09220 GH64-GluB-like glycosi 55.2 12 0.00026 35.3 3.2 22 183-204 321-344 (369)
15 PHA03094 dUTPase; Provisional 52.0 16 0.00034 29.7 3.0 29 30-58 34-68 (144)
16 cd05468 pVHL von Hippel-Landau 50.7 23 0.0005 28.6 3.8 47 2-54 9-55 (141)
17 cd09216 GH64-LPHase-like glyco 48.3 10 0.00023 35.5 1.6 22 183-204 310-333 (353)
18 PF11142 DUF2917: Protein of u 46.9 21 0.00046 24.9 2.7 23 32-54 2-29 (63)
19 PF01847 VHL: von Hippel-Linda 46.1 17 0.00036 30.4 2.3 46 2-53 15-60 (156)
20 cd07557 trimeric_dUTPase Trime 34.0 53 0.0012 23.7 3.2 28 31-58 13-46 (92)
21 PF05991 NYN_YacP: YacP-like N 32.9 14 0.00031 30.5 0.0 10 109-118 2-11 (166)
22 PF00947 Pico_P2A: Picornaviru 30.6 19 0.00042 29.0 0.4 18 64-81 83-100 (127)
23 cd00407 Urease_beta Urease bet 28.4 1.2E+02 0.0026 23.6 4.3 53 2-54 22-92 (101)
24 TIGR00192 urease_beta urease, 28.2 1.1E+02 0.0025 23.7 4.2 53 2-54 22-92 (101)
25 PF05726 Pirin_C: Pirin C-term 27.7 61 0.0013 24.4 2.7 26 32-57 4-29 (104)
26 PLN02547 dUTP pyrophosphatase 27.2 77 0.0017 26.1 3.4 28 31-58 46-79 (157)
27 PHA02703 ORF007 dUTPase; Provi 26.6 81 0.0018 26.3 3.5 29 31-59 43-77 (165)
28 PF01356 A_amylase_inhib: Alph 25.8 70 0.0015 23.0 2.5 36 5-43 18-53 (68)
29 PRK13203 ureB urease subunit b 25.1 1.4E+02 0.003 23.2 4.2 53 2-54 22-92 (102)
30 PRK13202 ureB urease subunit b 23.3 1.7E+02 0.0036 22.9 4.3 53 2-54 23-93 (104)
31 PF07385 DUF1498: Protein of u 23.2 68 0.0015 28.4 2.4 24 30-55 154-177 (225)
32 PRK13956 dut deoxyuridine 5'-t 22.7 1.4E+02 0.003 24.5 4.0 29 30-58 35-69 (147)
33 TIGR00576 dut deoxyuridine 5'- 22.3 1.1E+02 0.0024 24.5 3.4 28 31-58 30-63 (141)
34 PRK00601 dut deoxyuridine 5'-t 21.5 1.2E+02 0.0025 24.7 3.4 28 31-58 39-72 (150)
35 PF10633 NPCBM_assoc: NPCBM-as 20.7 1.3E+02 0.0027 21.2 3.1 15 2-16 9-23 (78)
36 PF09244 DUF1964: Domain of un 20.4 41 0.00089 24.0 0.4 28 196-223 5-35 (68)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=6.6e-90 Score=594.06 Aligned_cols=217 Identities=59% Similarity=1.206 Sum_probs=209.3
Q ss_pred EEEEEeCCCCcccceeecCCCCCCCCCCceeecCCCeEEEecCCCCceeEeeecccccCCCCCcCCcCcccCcccccCCC
Q 044059 3 QLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWSGRIWGRQGCRFDSNGKGSCDTGDCSAQLHCQGT 82 (223)
Q Consensus 3 t~tv~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriW~RtgCs~d~~g~~~C~TGdC~g~l~C~g~ 82 (223)
+|||+|||+||||||+++++|+++|..+||+|+||++++|+||++|+|||||||+|+||+.|+++|+||||+|+|+|++.
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g~ 80 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCGGGLECNGA 80 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCCCeeecCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCcceEEEEecCCCCCCceeeeecccccCCCceeccCCCCCCCCCccccccccccCCCCceee-cCCeEEeccchhh
Q 044059 83 GGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMKPVGGGIGCGVASCDADLNICCPSALEVK-VGGKVVGCKSACL 161 (223)
Q Consensus 83 g~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~-~~g~vv~C~SaC~ 161 (223)
+++||+|||||||++. +++|||||||||||||||+|+|+++.+.|+.++|.+|||..||.||||. .+|+||||||||.
T Consensus 81 ~g~pP~TlaEftl~~~-~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC~ 159 (219)
T cd09218 81 GGAPPATLAEFTLGGS-GGQDFYDVSLVDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNSGGRVVACKSACL 159 (219)
T ss_pred CCCCCceeEEEEeccC-CCCcceeeeeeccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccCCCcEeeecCHHH
Confidence 8889999999999875 6789999999999999999999876668999999999999999999996 4688999999999
Q ss_pred ccCCCccccCCCCCCCCCCCCchhHHHHHhhCCCccccccCCCCCceeecC-CCeEEEec
Q 044059 162 AMQSAKYCCTGQYANPKTCKPTLFANLFKAICPKAYSYAFDDSSSLNKCRA-SRYVITFC 220 (223)
Q Consensus 162 a~~~~~~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~-~~y~vtFC 220 (223)
+|++|||||+|+|++|++|+|+.||++||++||+||+|||||++|+|+|++ ++|+||||
T Consensus 160 ~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 160 AFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred hhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999997 99999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=5.4e-88 Score=582.07 Aligned_cols=216 Identities=50% Similarity=1.036 Sum_probs=208.5
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCceeecCCCeEEEecCCCCc-eeEeeecccccCCCCCcCCcCcccCcccccCCC
Q 044059 4 LIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWS-GRIWGRQGCRFDSNGKGSCDTGDCSAQLHCQGT 82 (223)
Q Consensus 4 ~tv~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~Ws-GriW~RtgCs~d~~g~~~C~TGdC~g~l~C~g~ 82 (223)
|||+|||+||||||++++ |+++|..+||+|+||++++|+||++|+ |||||||+|+||++|+++|+||||+|.|+|++.
T Consensus 1 fti~N~C~~tVWp~~~~~-g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~ 79 (218)
T smart00205 1 FEFVNNCPYTVWAAALPS-GKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGW 79 (218)
T ss_pred CEEEcCCCCceeceecCC-CCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCC
Confidence 799999999999999998 999998999999999999999999996 999999999999999999999999999999988
Q ss_pred CCCCCcceEEEEecCCCCCCceeeeecccccCCCceeccCCCCCCCCCccccccccccCCCCceeecCCeEEeccchhhc
Q 044059 83 GGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMKPVGGGIGCGVASCDADLNICCPSALEVKVGGKVVGCKSACLA 162 (223)
Q Consensus 83 g~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~g~vv~C~SaC~a 162 (223)
+++||+|||||||+.. +++|||||||||||||||+|.|+++.+.|+.++|.+|||..||+||||+++|.||||||||.+
T Consensus 80 gg~pP~TlaEftl~~~-~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~ 158 (218)
T smart00205 80 GGRPPATLAEFALNQF-GGLDFYDVSLVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPGGGSVVACNSACTV 158 (218)
T ss_pred CCCCCcceeEEEecCC-CCcceeeeEeeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHccccCCcccccccHhhc
Confidence 8899999999999876 678999999999999999999987666899999999999999999999877899999999999
Q ss_pred cCCCccccCCCCCCCCCCCCchhHHHHHhhCCCccccccCCCCCceeecC-CCeEEEecC
Q 044059 163 MQSAKYCCTGQYANPKTCKPTLFANLFKAICPKAYSYAFDDSSSLNKCRA-SRYVITFCP 221 (223)
Q Consensus 163 ~~~~~~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~-~~y~vtFCP 221 (223)
|++|||||+|+|++|++|+|+.||++||++||+||+||+||++++|+|++ ++|+|+|||
T Consensus 159 f~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 159 FGTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred cCCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999 999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=3.2e-86 Score=573.11 Aligned_cols=212 Identities=38% Similarity=0.833 Sum_probs=199.0
Q ss_pred EEEEeCCCCcccceeecCCCCC---CCCCCceeecCCCeEEEecCCCCc-eeEeeecccccC-CCCCcCCcCcccCcccc
Q 044059 4 LIVVNNCQENLWPGILGGAGHP---TPNNGGFKLSSGEEVVLDVPEKWS-GRIWGRQGCRFD-SNGKGSCDTGDCSAQLH 78 (223)
Q Consensus 4 ~tv~N~C~~tVwp~~~~~~g~~---~~~~~g~~L~~G~s~s~~vp~~Ws-GriW~RtgCs~d-~~g~~~C~TGdC~g~l~ 78 (223)
|||+|||+||||||+++++|++ ++..+||+|+||++++|+||++|+ |||||||||+|| ..|+++|+||||+|+|+
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 7999999999999999999988 677899999999999999999997 999999999999 46999999999999999
Q ss_pred cCCCCCCCCcceEEEEecCCCCCCceeeeecccccCCCceeccCCCCCCCCCccccccccccCCCCceee--cCCeEEec
Q 044059 79 CQGTGGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMKPVGGGIGCGVASCDADLNICCPSALEVK--VGGKVVGC 156 (223)
Q Consensus 79 C~g~g~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~--~~g~vv~C 156 (223)
|++ +++||+|||||+|++. ++|||||||||||||||+|.|.. .|+.++|.+|||..||.||||+ .+|+||||
T Consensus 81 C~~-~g~pP~TlaEftL~~~--~~D~YdVSlVDGfNlP~~i~P~~---~C~~~~C~~dln~~CP~~L~v~~~~~g~~vaC 154 (229)
T cd09219 81 CEN-SDQPPASLAEFTLIGG--KEDNYDISLVDGFNIPLNITNNI---TCPQPQCQVDLNVLCPALLRGPLDQKGVNLGC 154 (229)
T ss_pred cCC-CCCCCcceeeEEecCC--CCceeEEEEecccccceEeccCC---CCCCCcccCCCcccCCHHHccccCCCCcccee
Confidence 995 5679999999999974 78999999999999999999932 7999999999999999999995 46889999
Q ss_pred cchhhc-cCC--CccccCCCCCCCCCCCC--chhHHHHHhhCCCccccccCCCC--CceeecC---CCeEEEecC
Q 044059 157 KSACLA-MQS--AKYCCTGQYANPKTCKP--TLFANLFKAICPKAYSYAFDDSS--SLNKCRA---SRYVITFCP 221 (223)
Q Consensus 157 ~SaC~a-~~~--~~~CC~g~~~~p~~C~p--t~ys~~fK~~CP~AYsya~Dd~t--stftC~~---~~y~vtFCP 221 (223)
||||.| |+. |||||+|+|++|++|+| +.||++||++||+||||||||++ |||||++ ++|+|||||
T Consensus 155 ~SaC~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 155 ISPCNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred cCHhhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 999999 655 99999999999999999 88999999999999999999999 6799997 999999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=1.9e-83 Score=553.15 Aligned_cols=212 Identities=55% Similarity=1.137 Sum_probs=177.8
Q ss_pred eCCCCcccceeecCCCCCCCCCCceeecCCCeEEEecCCCCceeEeeecccccCCCCCcCCcCcccCcccccCCCCCCCC
Q 044059 8 NNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWSGRIWGRQGCRFDSNGKGSCDTGDCSAQLHCQGTGGAPP 87 (223)
Q Consensus 8 N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriW~RtgCs~d~~g~~~C~TGdC~g~l~C~g~g~~pp 87 (223)
|||+||||||+++++|++.+..+||+|+||++++|.+|++|+|||||||+|++++.|+++|+||||+|+++|++.++++|
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~P 80 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSPP 80 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----SS
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCCcccccccccCccc
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999998778899
Q ss_pred cceEEEEecCCCCCCceeeeecccccCCCceeccCCCCCCCCCccccccccccCCCCceeecCCeEEeccchhhccCCCc
Q 044059 88 ATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMKPVGGGIGCGVASCDADLNICCPSALEVKVGGKVVGCKSACLAMQSAK 167 (223)
Q Consensus 88 aTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~g~vv~C~SaC~a~~~~~ 167 (223)
+|||||+|++. +++|||||||||||||||+|+|.+ ...|+.++|.+||+..||.|||++..++||+|+|+|.+|++++
T Consensus 81 ~TlaEftl~~~-~~~d~YDVSlVdGfNlP~~i~p~~-~~~C~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~ 158 (213)
T PF00314_consen 81 ATLAEFTLNGS-NGQDFYDVSLVDGFNLPMSISPSG-GSNCRSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDE 158 (213)
T ss_dssp --EEEEEEEET-TTEEEEEEESTT-BSS-EEEEESS-SSSSSSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHH
T ss_pred ceeEEEEeccC-CCcceEEEEeeeeecCChhhccCC-CCccccccCccccccccchhheeeccCceeeecccceeccCCc
Confidence 99999999755 689999999999999999999995 5799999999999999999999976655999999999999999
Q ss_pred cccCCCCCCCCCCCCchhHHHHHhhCCCccccccCCCCCceeecC-CCeEEEecC
Q 044059 168 YCCTGQYANPKTCKPTLFANLFKAICPKAYSYAFDDSSSLNKCRA-SRYVITFCP 221 (223)
Q Consensus 168 ~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~-~~y~vtFCP 221 (223)
|||+|+|..|++|+++.|+++||++||+||+|||||++|+|+|++ ++|+|||||
T Consensus 159 ~CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 159 YCCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred cccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999999999999999999999999999999999999999999998 999999998
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=3.6e-63 Score=408.68 Aligned_cols=155 Identities=46% Similarity=1.009 Sum_probs=142.7
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCceeecCCCeEEEecCCCCceeEeeecccccCC-CCCcCCcCcccCcccccCCC
Q 044059 4 LIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWSGRIWGRQGCRFDS-NGKGSCDTGDCSAQLHCQGT 82 (223)
Q Consensus 4 ~tv~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriW~RtgCs~d~-~g~~~C~TGdC~g~l~C~g~ 82 (223)
|||+|||+||||||+++++|++ +..+||+|+||++++|.+|++|+|||||||+|+||+ .|+++|+||||+|+++|++
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~-~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g- 78 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKG-PYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCNGGLNCQG- 78 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCC-CCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCCceeecCC-
Confidence 7999999999999999999997 778999999999999999999999999999999998 7999999999999999998
Q ss_pred CCCCCcceEEEEecCCCCCCceeeeecccccCCCceeccCCCCCCCCCccccccccccCCCCceeecCCeEEeccchhhc
Q 044059 83 GGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMKPVGGGIGCGVASCDADLNICCPSALEVKVGGKVVGCKSACLA 162 (223)
Q Consensus 83 g~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~g~vv~C~SaC~a 162 (223)
+++||+|||||||++. +++|||||||||||||||+|+|++ +.|+.++|.+
T Consensus 79 ~g~pp~TlaEftl~~~-~~~d~YdVSlVdG~NlP~~i~P~~--~~C~~~~C~~--------------------------- 128 (157)
T cd09215 79 TGGPPATLAEFTLSGG-GGLDYYDISLVDGYNLPMSITPQP--GECPTPICAA--------------------------- 128 (157)
T ss_pred CCCCCcceEEEEecCC-CCcceeEEEeeccccCCEEEecCC--CCCCCCcccc---------------------------
Confidence 5679999999999876 678999999999999999999975 2455444432
Q ss_pred cCCCccccCCCCCCCCCCCCchhHHHHHhhCCCccccccCCCCCceeecC-CCeEEEec
Q 044059 163 MQSAKYCCTGQYANPKTCKPTLFANLFKAICPKAYSYAFDDSSSLNKCRA-SRYVITFC 220 (223)
Q Consensus 163 ~~~~~~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~-~~y~vtFC 220 (223)
||+||+|||||++++|+|++ ++|+|+||
T Consensus 129 ------------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 ------------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ------------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 99999999999999999998 99999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=5.9e-55 Score=358.15 Aligned_cols=149 Identities=49% Similarity=1.050 Sum_probs=133.2
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCceeecCCCeEEEecCCC-CceeEeeecccccCCCCCcCCcCcccCcccccCCC
Q 044059 4 LIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEK-WSGRIWGRQGCRFDSNGKGSCDTGDCSAQLHCQGT 82 (223)
Q Consensus 4 ~tv~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~-WsGriW~RtgCs~d~~g~~~C~TGdC~g~l~C~g~ 82 (223)
|+|+|||+||||||+++. .+||+|+||++++|++|++ |+|||||||+|+||+.|+++|+||||+|+++|++
T Consensus 1 ~~~~N~C~~tvWp~~~~~-------~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~~- 72 (151)
T cd09217 1 FTITNNCGYTVWPAATPV-------GGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCGGVLSCTG- 72 (151)
T ss_pred CEEEeCCCCcccceEecC-------CCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCCCeeecCC-
Confidence 799999999999999873 4799999999999999997 9999999999999999999999999999999995
Q ss_pred CCCCCcceEEEEecCCCCCCceeeeecccccCCCceeccCCCCCCCCCccccccccccCCCCceeecCCeEEeccchhhc
Q 044059 83 GGAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMKPVGGGIGCGVASCDADLNICCPSALEVKVGGKVVGCKSACLA 162 (223)
Q Consensus 83 g~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~g~vv~C~SaC~a 162 (223)
+++||+||+||||.. +++|||||||||||||||+|.|+++ .|+.++|..
T Consensus 73 ~g~pp~Tl~E~tl~~--~~~d~YdISlVdG~NlP~~i~P~~~--~C~~~~C~~--------------------------- 121 (151)
T cd09217 73 SGKPPATLAEYTLNQ--SGQDFYDISLVDGFNVPMDFSPTGG--GCHAIPCAA--------------------------- 121 (151)
T ss_pred CCCCCceeEEEEecC--CCCccEEEEeecccccceEEecCCC--CCCCCcCCC---------------------------
Confidence 568999999999976 3689999999999999999999742 354444432
Q ss_pred cCCCccccCCCCCCCCCCCCchhHHHHHhhCCCccccccCCCCCceeecC-CCeEEEecC
Q 044059 163 MQSAKYCCTGQYANPKTCKPTLFANLFKAICPKAYSYAFDDSSSLNKCRA-SRYVITFCP 221 (223)
Q Consensus 163 ~~~~~~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~-~~y~vtFCP 221 (223)
. ||+||+|++|| .++++|+. ++|+|||||
T Consensus 122 --------------------d---------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 --------------------N---------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred --------------------C---------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 99999999995 79999999 999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=3.2e-54 Score=354.35 Aligned_cols=152 Identities=39% Similarity=0.676 Sum_probs=136.8
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCceeecCCCeEEEecCCCCceeEeeecccccCCCCCcCCcCcccCcccccCCCC
Q 044059 4 LIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWSGRIWGRQGCRFDSNGKGSCDTGDCSAQLHCQGTG 83 (223)
Q Consensus 4 ~tv~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriW~RtgCs~d~~g~~~C~TGdC~g~l~C~g~g 83 (223)
|||+|||+|||||+++++++++.+..+||+|+||++++|+||++|+||||+||+|+++..+++.|+||||++ +.|.+.+
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~~ 79 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDPN 79 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCCC-cccCCCC
Confidence 799999999999999999888888889999999999999999999999999999999988999999999998 6888777
Q ss_pred CCCCcceEEEEecCCCCCCceeeeecccccCCCceeccCCCCCCCCCccccccccccCCCCceeecCCeEEeccchhhcc
Q 044059 84 GAPPATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMKPVGGGIGCGVASCDADLNICCPSALEVKVGGKVVGCKSACLAM 163 (223)
Q Consensus 84 ~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~g~vv~C~SaC~a~ 163 (223)
+.||+|||||||++. +++|||||||||||||||+|+|..+.+
T Consensus 80 g~pp~TlaEfTl~~~-~~~dfydISlVDGfNlP~~i~p~~~~g------------------------------------- 121 (153)
T cd08961 80 RDPPFTLAEFTLNDF-NSGDFIDSSLVDGFNAPMTVGPRRGDG------------------------------------- 121 (153)
T ss_pred CCCCcceEEEEecCC-CCcceEEEEeecccCCCEEEEeccCCC-------------------------------------
Confidence 889999999999875 578999999999999999999974321
Q ss_pred CCCccccCCCCCCCCCCCCchhHHHHHhhCCCccccccCCCCCceeecC-CCeEEEe
Q 044059 164 QSAKYCCTGQYANPKTCKPTLFANLFKAICPKAYSYAFDDSSSLNKCRA-SRYVITF 219 (223)
Q Consensus 164 ~~~~~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~-~~y~vtF 219 (223)
.|++.. |||+|||||+.++|+|++ ++|.|||
T Consensus 122 ---------------~C~~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 122 ---------------TCLSTG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ---------------Cccccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 122211 999999999999999999 9999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=97.87 E-value=0.00017 Score=59.79 Aligned_cols=47 Identities=26% Similarity=0.324 Sum_probs=36.7
Q ss_pred CCcceEEEEecCCCCCCceeeeecccccC---CCceeccCCCCCCCCCccccc
Q 044059 86 PPATVVEMTLGSSASPLHFYDVSLVDGFN---LPVSMKPVGGGIGCGVASCDA 135 (223)
Q Consensus 86 ppaTlaEftl~~~~~~~d~YDVSlVdG~N---lP~~i~p~~g~~~C~~~~C~~ 135 (223)
.|.|..||+|... +.+-|||+|.|.|.. -+|.|.|.+. .|..+-|..
T Consensus 72 ~pqt~FaYtL~~d-~~~VwYDLSdvfGdPF~G~~v~v~ps~~--~Cp~I~Wp~ 121 (155)
T PF04681_consen 72 SPQTIFAYTLVDD-NNQVWYDLSDVFGDPFAGHKVTVNPSDP--SCPSIVWPN 121 (155)
T ss_pred CceeEEEEEecCC-CceEEEECccccCCCcCCCEEEEecCCC--CCCceECCC
Confidence 5899999999864 568999999999863 3677888753 787777654
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=96.67 E-value=0.0066 Score=56.50 Aligned_cols=110 Identities=23% Similarity=0.336 Sum_probs=64.7
Q ss_pred EEEEEeCCCC--cccceeecCC---C---------CC---CCC--------CCceeec-CCCeEEEecCCCCceeEeeec
Q 044059 3 QLIVVNNCQE--NLWPGILGGA---G---------HP---TPN--------NGGFKLS-SGEEVVLDVPEKWSGRIWGRQ 56 (223)
Q Consensus 3 t~tv~N~C~~--tVwp~~~~~~---g---------~~---~~~--------~~g~~L~-~G~s~s~~vp~~WsGriW~Rt 56 (223)
.|+|+||-+. +||..+++.. + .. ... .=...|. +|++.++.+|. ++||||=-.
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 5899999987 8998886531 1 10 000 0113343 68889999998 999999432
Q ss_pred ccccCCCCCcCCcCcccCcccccCC-CCC-CCC----cceEEEEecCCCCCCceeeeecccccCCCceeccCC
Q 044059 57 GCRFDSNGKGSCDTGDCSAQLHCQG-TGG-APP----ATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMKPVG 123 (223)
Q Consensus 57 gCs~d~~g~~~C~TGdC~g~l~C~g-~g~-~pp----aTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~ 123 (223)
+=. =.|. ... +..+.=.. ... -|- -..+|||++.. .-|-++|.||-|.|||.|+-.+
T Consensus 81 g~~----L~F~-~~~--~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~~---gl~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 81 GSK----LRFK-VVT--NPALVQPAGWNPSDPNFNILHDWVEFTFNDA---GLFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred CCe----eEEE-ecC--CCcccCCCCCCCCCCCccceEEEEEEEecCC---ceEecccceeeeccceEEEEec
Confidence 210 0111 001 11111111 000 111 14489999853 4689999999999999998554
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=95.81 E-value=0.049 Score=51.03 Aligned_cols=112 Identities=23% Similarity=0.290 Sum_probs=64.8
Q ss_pred EEEEEeCCCC-cccceeecCC---C---------C-----------CCCCCC--ceeec-CCCeEEEecCCCCceeEeee
Q 044059 3 QLIVVNNCQE-NLWPGILGGA---G---------H-----------PTPNNG--GFKLS-SGEEVVLDVPEKWSGRIWGR 55 (223)
Q Consensus 3 t~tv~N~C~~-tVwp~~~~~~---g---------~-----------~~~~~~--g~~L~-~G~s~s~~vp~~WsGriW~R 55 (223)
.|+|+|+-+. +|+.-+++.. + + +..... ...|. +|++.+++||.-++||||=-
T Consensus 2 ~l~l~N~~~~~~vyaYitG~~~~~~~~~~l~adG~~~~~~~~~~~~~~~~~~d~aIpl~~~G~~~titiP~i~sgRIyfS 81 (369)
T cd09220 2 PLALVNNSGSGTVYAYITGLDLNNNRVVFLRADGSTYYPPSSPSAVPSPLGADCAIPLGAPGSTTTVTIPILAGGRIWFS 81 (369)
T ss_pred cEEEEecCCCCcEEEEEeceecCCCcEEEEeCCCcEeCCCCCccccCCCCCcceeeecCCCCCceeEEcccccceEEEEE
Confidence 5889999885 7887775431 1 1 000011 13343 68899999999899999933
Q ss_pred cccccCCCCCcCCcCcccCcccccCC-CC-CCCC----cceEEEEecCCCCCCceeeeecccccCCCceeccCC
Q 044059 56 QGCRFDSNGKGSCDTGDCSAQLHCQG-TG-GAPP----ATVVEMTLGSSASPLHFYDVSLVDGFNLPVSMKPVG 123 (223)
Q Consensus 56 tgCs~d~~g~~~C~TGdC~g~l~C~g-~g-~~pp----aTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~ 123 (223)
.+=. -.|- ...+ +-.+.=.. .. .-|- -..+|||++. ..-|-++|.||-|.|||.|+-.+
T Consensus 82 ~g~~----L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~---~~l~~N~S~VD~~~~P~~l~l~~ 146 (369)
T cd09220 82 VDDK----LTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS---GQLYANISYVDFVGLPLGLSLTT 146 (369)
T ss_pred cCCe----EEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC---CceEecccceeeeccCeEEEEEc
Confidence 2111 0111 1111 11111111 00 0111 1448999986 35789999999999999998553
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=76.22 E-value=1.7 Score=40.10 Aligned_cols=32 Identities=22% Similarity=0.521 Sum_probs=27.4
Q ss_pred ceEEEEecCCCCCCceeeeecccccCCCceeccCC
Q 044059 89 TVVEMTLGSSASPLHFYDVSLVDGFNLPVSMKPVG 123 (223)
Q Consensus 89 TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~ 123 (223)
..+|||++. ..-|-++|.||-|.|||.|+-.+
T Consensus 124 df~EFT~n~---~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYNA---TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEecC---CceEecccceeeeccCeEEEEEc
Confidence 348999985 57899999999999999998664
No 12
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=73.46 E-value=5 Score=31.46 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCcccceeecCCCCCCCCCCceeecCCCeEEE
Q 044059 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVL 42 (223)
Q Consensus 2 ~t~tv~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~ 42 (223)
+-|+|-|+-++.|++++.-..+..-...|-|.|+||+-.++
T Consensus 4 a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 4 AGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred CCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 56899999999999998654444444567789999997776
No 13
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=70.72 E-value=4 Score=37.68 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=25.4
Q ss_pred chhHHHHHhhCC--CccccccCCC---CCceeecC-CCeEEE
Q 044059 183 TLFANLFKAICP--KAYSYAFDDS---SSLNKCRA-SRYVIT 218 (223)
Q Consensus 183 t~ys~~fK~~CP--~AYsya~Dd~---tstftC~~-~~y~vt 218 (223)
+.|++++++.-. .||.|||||- +++..-.. ...+|+
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV~~~s~~v~~~~P~~~~it 317 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDVNGQSSTLSTTDPTHATIT 317 (319)
T ss_pred hHHHHHHHHhccCCCeeecccccccccccccccCCCceEEEE
Confidence 579999999997 8999999984 33333333 445554
No 14
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=55.16 E-value=12 Score=35.30 Aligned_cols=22 Identities=18% Similarity=0.646 Sum_probs=19.9
Q ss_pred chhHHHHHhhCC--CccccccCCC
Q 044059 183 TLFANLFKAICP--KAYSYAFDDS 204 (223)
Q Consensus 183 t~ys~~fK~~CP--~AYsya~Dd~ 204 (223)
+.|++++++.-+ .+|.|||||-
T Consensus 321 NhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 321 NHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred hHHHHHHHHhccCCCeeccccccc
Confidence 579999999998 7899999996
No 15
>PHA03094 dUTPase; Provisional
Probab=51.97 E-value=16 Score=29.70 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=24.3
Q ss_pred CceeecCCCeEE------EecCCCCceeEeeeccc
Q 044059 30 GGFKLSSGEEVV------LDVPEKWSGRIWGRQGC 58 (223)
Q Consensus 30 ~g~~L~~G~s~s------~~vp~~WsGriW~RtgC 58 (223)
..+.|.||+... +.+|.+|.|.|++|.+-
T Consensus 34 ~~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsl 68 (144)
T PHA03094 34 YDYTVPPKERILVKTDISLSIPKFCYGRIAPRSGL 68 (144)
T ss_pred CCeEECCCCEEEEEcCeEEEcCCCEEEEEEccccc
Confidence 347899999877 77999999999999754
No 16
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=50.70 E-value=23 Score=28.62 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=35.2
Q ss_pred cEEEEEeCCCCcccceeecCCCCCCCCCCceeecCCCeEEEecCCCCceeEee
Q 044059 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWSGRIWG 54 (223)
Q Consensus 2 ~t~tv~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriW~ 54 (223)
+.++|+|+.+.+|-+-+....|....- ..|+||+...++ .+.|..|=
T Consensus 9 ~~v~F~N~t~~~v~~~Wid~~G~~~~Y---~~l~pg~~~~~~---Ty~~H~W~ 55 (141)
T cd05468 9 STVRFVNRTDRPVELYWIDYDGKPVSY---GTLQPGETVRQN---TYVGHPWL 55 (141)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCEEEe---eeeCCCCEEeec---ccCCCcEE
Confidence 579999999999999998776665422 369999987655 35566663
No 17
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=48.27 E-value=10 Score=35.52 Aligned_cols=22 Identities=36% Similarity=0.677 Sum_probs=19.3
Q ss_pred chhHHHHHhhCC--CccccccCCC
Q 044059 183 TLFANLFKAICP--KAYSYAFDDS 204 (223)
Q Consensus 183 t~ys~~fK~~CP--~AYsya~Dd~ 204 (223)
+.|++++++.=. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 579999999987 6899999994
No 18
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=46.85 E-value=21 Score=24.94 Aligned_cols=23 Identities=39% Similarity=0.744 Sum_probs=17.9
Q ss_pred eeecCCCeEEEecCCCC-----ceeEee
Q 044059 32 FKLSSGEEVVLDVPEKW-----SGRIWG 54 (223)
Q Consensus 32 ~~L~~G~s~s~~vp~~W-----sGriW~ 54 (223)
|+|.||+..++.+..+. +|++|=
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 78889998888887664 488883
No 19
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=46.14 E-value=17 Score=30.39 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=28.6
Q ss_pred cEEEEEeCCCCcccceeecCCCCCCCCCCceeecCCCeEEEecCCCCceeEe
Q 044059 2 AQLIVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLDVPEKWSGRIW 53 (223)
Q Consensus 2 ~t~tv~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriW 53 (223)
..++|+|+++.+|-+-|..-.|.+..- ..|+||+.+.++. +.|..|
T Consensus 15 s~V~F~N~s~r~V~v~Wldy~G~~~~Y---~~L~Pg~~~~~~T---Y~tHpW 60 (156)
T PF01847_consen 15 SFVRFVNRSPRTVDVYWLDYDGKPVPY---GTLKPGQGRRQNT---YVTHPW 60 (156)
T ss_dssp EEEEEEE-SSS-EEEEEE-TTS-EEE------B-TTEEEEEEE---ETT-EE
T ss_pred eEEEEEECCCCEEEEEEEcCCCcEeec---cccCCCCeEEccc---ccCCcE
Confidence 468999999999988888776665432 3599999888873 455666
No 20
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=33.99 E-value=53 Score=23.69 Aligned_cols=28 Identities=32% Similarity=0.712 Sum_probs=21.0
Q ss_pred ceeecCCCeEE------EecCCCCceeEeeeccc
Q 044059 31 GFKLSSGEEVV------LDVPEKWSGRIWGRQGC 58 (223)
Q Consensus 31 g~~L~~G~s~s------~~vp~~WsGriW~RtgC 58 (223)
.+.|.|+++.- +.+|.++.|.|++|.+-
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs~ 46 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSL 46 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCchh
Confidence 47788887443 45788999999999643
No 21
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=32.90 E-value=14 Score=30.48 Aligned_cols=10 Identities=50% Similarity=0.926 Sum_probs=8.0
Q ss_pred cccccCCCce
Q 044059 109 LVDGFNLPVS 118 (223)
Q Consensus 109 lVdG~NlP~~ 118 (223)
|||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6999998655
No 22
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=30.58 E-value=19 Score=29.04 Aligned_cols=18 Identities=39% Similarity=1.038 Sum_probs=14.0
Q ss_pred CCcCCcCcccCcccccCC
Q 044059 64 GKGSCDTGDCSAQLHCQG 81 (223)
Q Consensus 64 g~~~C~TGdC~g~l~C~g 81 (223)
|.+.|+-|||||.|.|+-
T Consensus 83 g~Gp~~PGdCGg~L~C~H 100 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCKH 100 (127)
T ss_dssp EE-SSSTT-TCSEEEETT
T ss_pred ecccCCCCCCCceeEeCC
Confidence 557899999999999983
No 23
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=28.44 E-value=1.2e+02 Score=23.60 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=34.4
Q ss_pred cEEEEEeCCCCcccceeec-----CC----------CC--CCCCCCceeecCCCeEEEecCC-CCceeEee
Q 044059 2 AQLIVVNNCQENLWPGILG-----GA----------GH--PTPNNGGFKLSSGEEVVLDVPE-KWSGRIWG 54 (223)
Q Consensus 2 ~t~tv~N~C~~tVwp~~~~-----~~----------g~--~~~~~~g~~L~~G~s~s~~vp~-~WsGriW~ 54 (223)
.+++|+|...-+|++|..- |. |. .-++.+..+.+||+++++.+-+ +=..+|+|
T Consensus 22 ~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G 92 (101)
T cd00407 22 VTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYG 92 (101)
T ss_pred EEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEc
Confidence 5899999999999999731 11 11 0123456778899999988642 22345554
No 24
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=28.22 E-value=1.1e+02 Score=23.70 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=34.4
Q ss_pred cEEEEEeCCCCcccceeec-----CC----------CC--CCCCCCceeecCCCeEEEecCC-CCceeEee
Q 044059 2 AQLIVVNNCQENLWPGILG-----GA----------GH--PTPNNGGFKLSSGEEVVLDVPE-KWSGRIWG 54 (223)
Q Consensus 2 ~t~tv~N~C~~tVwp~~~~-----~~----------g~--~~~~~~g~~L~~G~s~s~~vp~-~WsGriW~ 54 (223)
.+|.|+|.-.-+|++|..- |. |. .-++.+..+.+||+++++.+-+ +=..+|+|
T Consensus 22 ~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (101)
T TIGR00192 22 VSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYG 92 (101)
T ss_pred EEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 5899999999999999731 11 11 0123456677899999998642 22345654
No 25
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=27.66 E-value=61 Score=24.40 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=19.4
Q ss_pred eeecCCCeEEEecCCCCceeEeeecc
Q 044059 32 FKLSSGEEVVLDVPEKWSGRIWGRQG 57 (223)
Q Consensus 32 ~~L~~G~s~s~~vp~~WsGriW~Rtg 57 (223)
..|+||+++++.+|.+|..-|.-..|
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G 29 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEG 29 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEES
T ss_pred EEECCCCEEEeecCCCCEEEEEEEEC
Confidence 57999999999999999988876653
No 26
>PLN02547 dUTP pyrophosphatase
Probab=27.24 E-value=77 Score=26.15 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=22.2
Q ss_pred ceeecCCCeE------EEecCCCCceeEeeeccc
Q 044059 31 GFKLSSGEEV------VLDVPEKWSGRIWGRQGC 58 (223)
Q Consensus 31 g~~L~~G~s~------s~~vp~~WsGriW~RtgC 58 (223)
.+.|.|++.. .+.+|.+|.|+|++|.+=
T Consensus 46 d~~i~P~~~~li~tgi~v~iP~g~~g~i~~RSgl 79 (157)
T PLN02547 46 DTVVPARGKALVPTDLSIAIPEGTYARIAPRSGL 79 (157)
T ss_pred CeEECCCCEEEEEeceEEEcCCCeEEEEEccccc
Confidence 4678888865 456899999999999753
No 27
>PHA02703 ORF007 dUTPase; Provisional
Probab=26.60 E-value=81 Score=26.28 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=22.8
Q ss_pred ceeecCCCeE------EEecCCCCceeEeeecccc
Q 044059 31 GFKLSSGEEV------VLDVPEKWSGRIWGRQGCR 59 (223)
Q Consensus 31 g~~L~~G~s~------s~~vp~~WsGriW~RtgCs 59 (223)
.+.|+||+.. .+.+|.+|.|.|++|.+-.
T Consensus 43 d~vi~P~~~~lv~TGi~i~iP~g~~g~i~~RSsla 77 (165)
T PHA02703 43 DCIVPAGCRCVVFTDLLIKLPDGCYGRIAPRSGLA 77 (165)
T ss_pred CeEECCCCEEEEeCCeEEEcCCCeEEEEECCccch
Confidence 4678899874 5668999999999997543
No 28
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=25.78 E-value=70 Score=23.04 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=21.9
Q ss_pred EEEeCCCCcccceeecCCCCCCCCCCceeecCCCeEEEe
Q 044059 5 IVVNNCQENLWPGILGGAGHPTPNNGGFKLSSGEEVVLD 43 (223)
Q Consensus 5 tv~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~ 43 (223)
.+.|+|+.+|-+-+.=..|... --..|.||+-.+|-
T Consensus 18 ~v~N~Ca~tvsVtV~Y~dG~~~---PCrv~~PG~~~Tf~ 53 (68)
T PF01356_consen 18 DVTNGCADTVSVTVEYTDGQEV---PCRVIPPGDIATFP 53 (68)
T ss_dssp EEEE-SSS-EEEEEEETTS-CE---EEEEE-TTEEEEEE
T ss_pred EeeCCCcccEEEEEEEeCCCcc---eeEEeCCCCEEEec
Confidence 5789999999887654334321 14678899877764
No 29
>PRK13203 ureB urease subunit beta; Reviewed
Probab=25.10 E-value=1.4e+02 Score=23.24 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=34.3
Q ss_pred cEEEEEeCCCCcccceeec-----CC----------CCC--CCCCCceeecCCCeEEEecCC-CCceeEee
Q 044059 2 AQLIVVNNCQENLWPGILG-----GA----------GHP--TPNNGGFKLSSGEEVVLDVPE-KWSGRIWG 54 (223)
Q Consensus 2 ~t~tv~N~C~~tVwp~~~~-----~~----------g~~--~~~~~g~~L~~G~s~s~~vp~-~WsGriW~ 54 (223)
.++.|+|...-+|++|..- |. |.- -++.+..+.+||+++++.+-+ +=..+|+|
T Consensus 22 ~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (102)
T PRK13203 22 VTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAGARRVYG 92 (102)
T ss_pred EEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 5899999999999999731 11 111 123456677899999988642 22345554
No 30
>PRK13202 ureB urease subunit beta; Reviewed
Probab=23.29 E-value=1.7e+02 Score=22.92 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=34.3
Q ss_pred cEEEEEeCCCCcccceeec-----CC----------CCC--CCCCCceeecCCCeEEEecCC-CCceeEee
Q 044059 2 AQLIVVNNCQENLWPGILG-----GA----------GHP--TPNNGGFKLSSGEEVVLDVPE-KWSGRIWG 54 (223)
Q Consensus 2 ~t~tv~N~C~~tVwp~~~~-----~~----------g~~--~~~~~g~~L~~G~s~s~~vp~-~WsGriW~ 54 (223)
.+++|+|...-+|++|..- |. |.- -++.+..+.+||+++++.+-+ +=..+|+|
T Consensus 23 ~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 93 (104)
T PRK13202 23 LQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGGRREVPG 93 (104)
T ss_pred EEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccCCeEEEc
Confidence 5899999999999999731 11 111 123455677899999988642 22345654
No 31
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=23.22 E-value=68 Score=28.36 Aligned_cols=24 Identities=29% Similarity=0.732 Sum_probs=13.5
Q ss_pred CceeecCCCeEEEecCCCCceeEeee
Q 044059 30 GGFKLSSGEEVVLDVPEKWSGRIWGR 55 (223)
Q Consensus 30 ~g~~L~~G~s~s~~vp~~WsGriW~R 55 (223)
+-.+|.||+|.++. |..| -+|||.
T Consensus 154 ~~l~L~PGESiTL~-Pg~y-H~Fw~e 177 (225)
T PF07385_consen 154 TQLRLNPGESITLP-PGIY-HWFWGE 177 (225)
T ss_dssp -EEEE-TT-EEEE--TTEE-EEEEE-
T ss_pred ceEEeCCCCeEeeC-CCCe-eeEEec
Confidence 34789999977764 3334 689975
No 32
>PRK13956 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=22.69 E-value=1.4e+02 Score=24.50 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=22.3
Q ss_pred CceeecCCCeEEE------ecCCCCceeEeeeccc
Q 044059 30 GGFKLSSGEEVVL------DVPEKWSGRIWGRQGC 58 (223)
Q Consensus 30 ~g~~L~~G~s~s~------~vp~~WsGriW~RtgC 58 (223)
..+.|.||+...+ .+|.+|.|.|++|.+-
T Consensus 35 ~~~~i~p~~~~lv~TGi~i~lP~g~~~~I~~RSsl 69 (147)
T PRK13956 35 ERTVIAPGEIKLVPTGVKAYMQPGEVLYLYDRSSN 69 (147)
T ss_pred CCeEECCCCEEEEECCeEEECCCCeEEEEecCchh
Confidence 4578889886544 4888999999999643
No 33
>TIGR00576 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (dut). Changed role from 132 to 123. RTD
Probab=22.35 E-value=1.1e+02 Score=24.52 Aligned_cols=28 Identities=25% Similarity=0.627 Sum_probs=21.6
Q ss_pred ceeecCCCeE------EEecCCCCceeEeeeccc
Q 044059 31 GFKLSSGEEV------VLDVPEKWSGRIWGRQGC 58 (223)
Q Consensus 31 g~~L~~G~s~------s~~vp~~WsGriW~RtgC 58 (223)
.+.|.||++. .+.+|.++.|.|++|.+-
T Consensus 30 d~~i~P~~~~lv~tg~~v~ip~g~~~~i~~RSsl 63 (141)
T TIGR00576 30 DVTIPPGERALVPTGIAIELPDGYYGRVAPRSGL 63 (141)
T ss_pred CeEECCCCEEEEEeCcEEecCCCEEEEEEecccC
Confidence 4678888865 355788999999999643
No 34
>PRK00601 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=21.52 E-value=1.2e+02 Score=24.75 Aligned_cols=28 Identities=25% Similarity=0.577 Sum_probs=22.1
Q ss_pred ceeecCCCeE------EEecCCCCceeEeeeccc
Q 044059 31 GFKLSSGEEV------VLDVPEKWSGRIWGRQGC 58 (223)
Q Consensus 31 g~~L~~G~s~------s~~vp~~WsGriW~RtgC 58 (223)
.+.|.||++. .+.+|.++.+.|++|.+-
T Consensus 39 ~i~i~P~~~~lv~tg~~v~~p~~~~~~i~~RSsl 72 (150)
T PRK00601 39 PVTLAPGERALVPTGLAIHIPDGYEAQILPRSGL 72 (150)
T ss_pred CCEECCCCeEEEEcCEEEECCCCeEEEEEeCCcc
Confidence 6788899865 455788999999999654
No 35
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=20.67 E-value=1.3e+02 Score=21.18 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=8.5
Q ss_pred cEEEEEeCCCCcccc
Q 044059 2 AQLIVVNNCQENLWP 16 (223)
Q Consensus 2 ~t~tv~N~C~~tVwp 16 (223)
.+++|.|....++--
T Consensus 9 ~~~tv~N~g~~~~~~ 23 (78)
T PF10633_consen 9 VTLTVTNTGTAPLTN 23 (78)
T ss_dssp EEEEEE--SSS-BSS
T ss_pred EEEEEEECCCCceee
Confidence 468899999876543
No 36
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=20.35 E-value=41 Score=23.98 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=18.8
Q ss_pred ccccccCCCCC-ceeecC--CCeEEEecCCC
Q 044059 196 AYSYAFDDSSS-LNKCRA--SRYVITFCPPK 223 (223)
Q Consensus 196 AYsya~Dd~ts-tftC~~--~~y~vtFCP~~ 223 (223)
.+||+-|+.+| +|+=.+ ++-.+||=|.|
T Consensus 5 ~FSy~~dgdtSitf~W~g~~t~atLtFePg~ 35 (68)
T PF09244_consen 5 EFSYEADGDTSITFTWTGATTSATLTFEPGR 35 (68)
T ss_dssp EEEEEEETTTEEEEEEE-SS-EEEEEE-GGG
T ss_pred eeeEecCCCcEEEEEEeccccEEEEEEccCc
Confidence 47899877766 566555 78899998754
Done!