BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044062
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 12 LSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLH 71
+I +FK L L G ++ELP + +L LR L+LS + +LP + + L
Sbjct: 237 FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
Query: 72 TLLLEDCDRLEKLCADMGNLTKLHHL 97
D + + L + GNL L L
Sbjct: 297 YFYFFD-NMVTTLPWEFGNLCNLQFL 321
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 11 ALSILPKLFK-LQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYN 69
+L+ LP K L LRV L R++ LP +G L++ + TLP L N
Sbjct: 258 SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCN 317
Query: 70 LHTLLLE 76
L L +E
Sbjct: 318 LQFLGVE 324
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 450 RLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEVALP-SKLRKIRISSCDA 508
RLEY+ + EGLV L +LG+ +L+DI ++LV E+ L ++L IR S
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 509 LKSLPEAWM 517
L SL + W+
Sbjct: 201 LTSLRKLWL 209
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 450 RLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEVALP-SKLRKIRISSCDA 508
RLEY+ + EGLV L +LG+ +L+DI ++LV E+ L ++L IR S
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 509 LKSLPEAWM 517
L SL + W+
Sbjct: 201 LTSLRKLWL 209
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 26 VFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLC 85
LR + + PD L +L+H + + LP++ + L TL L + L L
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALP 143
Query: 86 ADMGNLTKLHHLNNSNTYSLEEMP 109
A + +L +L L+ L E+P
Sbjct: 144 ASIASLNRLRELSIRACPELTELP 167
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 17 KLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLE 76
+ F+L L+ ++ + ELPD+ L L L+ ++ LP S+ L L L +
Sbjct: 99 QAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158
Query: 77 DCDRLEKL 84
C L +L
Sbjct: 159 ACPELTEL 166
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 31/172 (18%)
Query: 298 KLRELDILRCSKLQGTFPEHLPALQMLVIQECKELLVSITSLPALCKLEIDGCKKVVWRS 357
+LREL I C +L PE L + + LV++ SL +LE G + + +
Sbjct: 151 RLRELSIRACPELT-ELPEPLASTDASGEHQG---LVNLQSL----RLEWTGIRSLP--A 200
Query: 358 ATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKN---IKNETYIWKSHNGLLQD 414
+ +L + S+ R++ GP +PKLEEL+++ ++N I+
Sbjct: 201 SIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLEELDLRGCTALRNYPPIFGGR------ 252
Query: 415 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLP 466
LKRL + C L +L + + Q LE L LR C L +LP
Sbjct: 253 -APLKRLILKDCSNLLTLPLDIHRLTQ---------LEKLDLRGCVNLSRLP 294
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 292 GVERFPKLRELDILRCSKLQGTFP--EHLPALQMLVIQECKELL---VSITSLPALCKLE 346
+ PKL ELD+ C+ L+ P L+ L++++C LL + I L L KL+
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 347 IDGC 350
+ GC
Sbjct: 284 LRGC 287
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 450 RLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFP-EVALPSKLRKIRISSCDA 508
+LE L LR C L P G L+ + + CS+L++ P ++ ++L K+ + C
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289
Query: 509 LKSLP 513
L LP
Sbjct: 290 LSRLP 294
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 18 LFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTLPESV-NKLYNLHTLLL 75
L +L RL+ L G +++ + P + L YLR LN+SG ++ TL ESV + + NL TL+L
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327
Query: 76 E 76
+
Sbjct: 328 D 328
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 14 ILPKLFK-LQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLH 71
I P F ++LR L +ISEL PD+ LR L L L G +I LP+S+ +
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 72 TLLLEDCDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKD 129
LLL + +++ L D LH+LN + Y + + G + L+ + + ++
Sbjct: 107 QLLLLNANKINXLRVDA--FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 14 ILPKLFK-LQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLH 71
I P F ++LR L +ISEL PD+ LR L L L G +I LP+S+ +
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 72 TLLLEDCDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKD 129
LLL + +++ C + LH+LN + Y + + G + L+ + + ++
Sbjct: 107 QLLLLNANKIN--CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 62/104 (59%), Gaps = 6/104 (5%)
Query: 21 LQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESV-NKLYNLHTLLLEDCD 79
L +R +L G ++ ++ ++ +L L +L L+G ++++LP V +KL NL L+L + +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 80 RLEKLCADMGN-LTKLHHLNNSNTYSLEEMPVGI-GKLTCLQTL 121
+L+ L + + LT L +LN ++ L+ +P G+ KLT L L
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTEL 162
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 32 YRISELPDSVGDLRYLRHLNLSGTEIKT-LPESVNKLYNLHTLLLEDCDRLEKLCADMGN 90
Y +P S+G L LR L L ++ +P+ + + L TL+L+ D ++ + + N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 91 LTKLHHLNNSNTYSLEEMPVGIGKLTCLQTL 121
T L+ ++ SN E+P IG+L L L
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 1 MLSNRLHGYLALSI--LPKLFKLQRLRVFSLRGYRIS-ELPDSVGDLRYLRHLNLSGTEI 57
M N L GY+ I +P LF + +L IS +PD VGDLR L L+LS ++
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLF------ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 58 KT-LPESVNKLYNLHTLLLEDCDRLEKLCADMG 89
+P++++ L L + L + + L +MG
Sbjct: 693 DGRIPQAMSALTMLTEIDLSN-NNLSGPIPEMG 724
>pdb|2A5Z|A Chain A, Crystal Structure Of Protein Of Unknown Function So2946
From Shewanella Oneidensis Mr-1
pdb|2A5Z|B Chain B, Crystal Structure Of Protein Of Unknown Function So2946
From Shewanella Oneidensis Mr-1
pdb|2A5Z|C Chain C, Crystal Structure Of Protein Of Unknown Function So2946
From Shewanella Oneidensis Mr-1
Length = 262
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 360 DHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEI 395
+H G Q +V T+N FLAG L PK ELE+
Sbjct: 86 NHFGVQ-PIVSSTTANASFLAGXLXAIFPKESELEV 120
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 32 YRISELPDSVGDLRYLRHLNLSGTEIKT-LPESVNKLYNLHTLLLEDCDRLEKLCADMGN 90
Y +P S+G L LR L L ++ +P+ + + L TL+L+ D ++ + + N
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 91 LTKLHHLNNSNTYSLEEMPVGIGKLTCLQTL 121
T L+ ++ SN E+P IG+L L L
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 1 MLSNRLHGYLALSI--LPKLFKLQRLRVFSLRGYRIS-ELPDSVGDLRYLRHLNLSGTEI 57
M N L GY+ I +P LF + +L IS +PD VGDLR L L+LS ++
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLF------ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 58 KT-LPESVNKLYNLHTLLLEDCDRLEKLCADMG 89
+P++++ L L + L + + L +MG
Sbjct: 690 DGRIPQAMSALTMLTEIDLSN-NNLSGPIPEMG 721
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 16 PKLFK-LQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHT 72
P LF+ L L+ L+ + LPD + DL L HL L G I ++PE + L++L
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 73 LLLEDCDRLEKL----CADMGNLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTL 121
LLL +R+ + D+G L L+ N +L +P + L LQ L
Sbjct: 181 LLLHQ-NRVAHVHPHAFRDLGRLMTLYLFAN----NLSALPTEALAPLRALQYL 229
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 20 KLQRLRVFSLRGYRISELPDSV-GDLRYLRHLNLSGTEIKTLPESV-NKLYNLHTLLLED 77
+L L L G ++ LP+ V L L +LNLS ++++LP V +KL L L L +
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-N 108
Query: 78 CDRLEKLCADMGNLTKLHHLNNSNTY--SLEEMPVGI-GKLTCLQTL 121
++L+ L G KL L + Y L+ +P G+ +LT LQ +
Sbjct: 109 TNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 16 PKLFK-LQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHT 72
P LF+ L L+ L+ + LPD + DL L HL L G I ++PE + L++L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 73 LLLEDCDRLEKL----CADMGNLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTL 121
LLL +R+ + D+G L L+ N +L +P + L LQ L
Sbjct: 182 LLLHQ-NRVAHVHPHAFRDLGRLMTLYLFAN----NLSALPTEALAPLRALQYL 230
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 12/107 (11%)
Query: 21 LQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESV-NKLYNLHTLLLEDCD 79
L +R +L G ++ ++ ++ +L L +L L+G ++++LP V +KL NL L+L + +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 80 RLEKL----CADMGNLTKLHHLNNSNTYSLEEMPVGI-GKLTCLQTL 121
+L+ L + NLT L+ +N L+ +P G+ KLT L L
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHN----QLQSLPKGVFDKLTNLTRL 162
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 30/168 (17%)
Query: 358 ATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICS 417
A + L S N++ D V +G + + KL EL ++N I S
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFE-YLSKLRELWLRN---------------NPIES 161
Query: 418 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRD 477
+ + P L L E K +LEY+ + EGL L +LG+ +++D
Sbjct: 162 IPSYAFNRVPSLMRLDLGELK-----------KLEYISEGAFEGLFNLKYLNLGMCNIKD 210
Query: 478 IEIYKCSSLVSFPEVALP-SKLRKIRISSCDALKSLPEAWMCDTNSSL 524
+ + LV E+ + + +IR S L SL + W+ ++ SL
Sbjct: 211 MP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 16 PKLFK-LQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHT 72
P LF+ L L+ L+ + LPD + DL L HL L G I ++PE + L++L
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 73 LLLE 76
LLL
Sbjct: 181 LLLH 184
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 29 LRGYRISELPDSVGD-LRYLRHLNLSGTEIKTLPESV-NKLYNLHTLLLEDCDRLEKLCA 86
L ++ LP V D L L L+LS +I++LP+ V +KL L L L + ++L+ L
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPN 93
Query: 87 DM-GNLTKLHHLNNSNTYSLEEMPVGI-GKLTCLQTL 121
+ LT+L L +T L+ +P GI +LT LQ +
Sbjct: 94 GVFDKLTQLKEL-ALDTNQLKSVPDGIFDRLTSLQKI 129
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 47 LRHLNLSGTEIKTLP--ESVNKLYNLHTLLLEDCD 79
L+HLNLSG +IK L E + KL NL +L L +C+
Sbjct: 95 LKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 129
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 20/95 (21%)
Query: 21 LQRLRVFSLRGYRISELPDSVGDLR---YLRHLNLSGTEIKTLPESVNKLYNLHTLLLED 77
L L V + R++ LP +G LR L+ L L G E+KTLP LL
Sbjct: 100 LPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLPPG----------LLTP 147
Query: 78 CDRLEKLCADMGNLTK-----LHHLNNSNTYSLEE 107
+LEKL NLT+ L+ L N +T L+E
Sbjct: 148 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 182
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 20/95 (21%)
Query: 21 LQRLRVFSLRGYRISELPDSVGDLR---YLRHLNLSGTEIKTLPESVNKLYNLHTLLLED 77
L L V + R++ LP +G LR L+ L L G E+KTLP LL
Sbjct: 99 LPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLPPG----------LLTP 146
Query: 78 CDRLEKLCADMGNLTK-----LHHLNNSNTYSLEE 107
+LEKL NLT+ L+ L N +T L+E
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 20/95 (21%)
Query: 21 LQRLRVFSLRGYRISELPDSVGDLR---YLRHLNLSGTEIKTLPESVNKLYNLHTLLLED 77
L L V + R++ LP +G LR L+ L L G E+KTLP LL
Sbjct: 99 LPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLPPG----------LLTP 146
Query: 78 CDRLEKLCADMGNLTK-----LHHLNNSNTYSLEE 107
+LEKL NLT+ L+ L N +T L+E
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 20/95 (21%)
Query: 21 LQRLRVFSLRGYRISELPDSVGDLR---YLRHLNLSGTEIKTLPESVNKLYNLHTLLLED 77
L L V + R++ LP +G LR L+ L L G E+KTLP LL
Sbjct: 99 LPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLPPG----------LLTP 146
Query: 78 CDRLEKLCADMGNLTK-----LHHLNNSNTYSLEE 107
+LEKL NLT+ L+ L N +T L+E
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 20/95 (21%)
Query: 21 LQRLRVFSLRGYRISELPDSVGDLR---YLRHLNLSGTEIKTLPESVNKLYNLHTLLLED 77
L L V + R++ LP +G LR L+ L L G E+KTLP LL
Sbjct: 99 LPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLPPG----------LLTP 146
Query: 78 CDRLEKLCADMGNLTK-----LHHLNNSNTYSLEE 107
+LEKL NLT+ L+ L N +T L+E
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 31/148 (20%)
Query: 23 RLRVFSLRGYRISEL--PD--SVGDLRYLR-----------HLNLSGTEIKTLPESVNKL 67
R + SL ISEL PD + +LR LR H+ L +++ L S N+L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 68 YNLH----------TLLLEDCDRLEKLCADMGNLTKLHH--LNNSNTYSLEEMPVGIGKL 115
N+ L D D L +C + GNLTKL L+ + L+ +PV L
Sbjct: 113 QNISCCPMASLRHLDLSFNDFDVL-PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 116 TC--LQTLSNFVVGKDS-GLRLPELKLL 140
+C L +S + G ++ L++P +L
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVL 199
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 10 LALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKT--LPESVNKL 67
LAL L LQ+L + P +G L+ L+ LN++ I++ LPE + L
Sbjct: 93 LALGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Query: 68 YNLHTLLLEDCDRLEKLCADM 88
NL L L C D+
Sbjct: 151 TNLEHLDLSSNKIQSIYCTDL 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,417,383
Number of Sequences: 62578
Number of extensions: 667844
Number of successful extensions: 1838
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1781
Number of HSP's gapped (non-prelim): 94
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)