Query 044062
Match_columns 567
No_of_seqs 192 out of 2468
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 11:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.3E-37 1.2E-41 346.3 23.9 497 1-563 76-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.2E-36 9.1E-41 339.0 24.0 492 1-558 100-607 (968)
3 KOG0472 Leucine-rich repeat pr 99.9 8.4E-28 1.8E-32 222.6 -7.4 447 13-557 59-540 (565)
4 KOG0618 Serine/threonine phosp 99.9 1.4E-26 3E-31 235.7 -3.1 445 8-534 30-488 (1081)
5 KOG4194 Membrane glycoprotein 99.9 3.8E-25 8.2E-30 214.2 5.4 100 23-124 79-181 (873)
6 KOG4194 Membrane glycoprotein 99.9 7.5E-25 1.6E-29 212.2 6.7 375 23-481 53-447 (873)
7 PLN03210 Resistant to P. syrin 99.9 1.1E-22 2.4E-27 230.3 24.2 249 213-512 655-909 (1153)
8 PLN03210 Resistant to P. syrin 99.9 1.2E-21 2.6E-26 221.8 22.6 315 190-540 589-911 (1153)
9 KOG0618 Serine/threonine phosp 99.9 2.4E-24 5.1E-29 219.5 -3.8 421 10-509 56-489 (1081)
10 KOG0472 Leucine-rich repeat pr 99.9 1.1E-24 2.3E-29 202.2 -7.6 439 12-533 81-539 (565)
11 KOG0444 Cytoskeletal regulator 99.9 1.9E-23 4.2E-28 203.9 -3.8 366 22-511 7-377 (1255)
12 KOG0444 Cytoskeletal regulator 99.8 2.5E-23 5.3E-28 203.2 -5.2 300 14-355 70-377 (1255)
13 KOG4237 Extracellular matrix p 99.6 1.2E-16 2.7E-21 148.8 1.2 261 8-279 55-357 (498)
14 PRK15387 E3 ubiquitin-protein 99.6 2.5E-14 5.4E-19 151.3 12.5 255 23-353 202-458 (788)
15 PRK15387 E3 ubiquitin-protein 99.5 6.3E-14 1.4E-18 148.2 13.2 70 45-124 201-270 (788)
16 KOG0617 Ras suppressor protein 99.5 4.3E-16 9.4E-21 128.6 -4.0 160 17-231 28-189 (264)
17 KOG0617 Ras suppressor protein 99.5 7.7E-16 1.7E-20 127.2 -4.0 141 8-165 42-183 (264)
18 KOG4658 Apoptotic ATPase [Sign 99.4 9.4E-14 2E-18 150.1 6.4 259 21-315 522-788 (889)
19 PRK15370 E3 ubiquitin-protein 99.4 2.7E-13 5.8E-18 144.4 9.3 92 22-123 178-269 (754)
20 KOG4341 F-box protein containi 99.4 1.1E-15 2.4E-20 143.7 -7.9 281 239-539 139-443 (483)
21 KOG4237 Extracellular matrix p 99.4 1.5E-14 3.3E-19 135.0 -2.6 89 32-123 56-147 (498)
22 KOG4341 F-box protein containi 99.4 2E-14 4.3E-19 135.3 -5.0 277 268-560 138-441 (483)
23 PRK15370 E3 ubiquitin-protein 99.3 2.7E-12 5.9E-17 136.8 10.1 61 45-111 178-238 (754)
24 KOG4658 Apoptotic ATPase [Sign 99.2 7.2E-12 1.6E-16 135.7 6.1 121 20-141 543-668 (889)
25 cd00116 LRR_RI Leucine-rich re 99.2 1.8E-12 3.9E-17 127.9 -3.1 102 1-106 5-121 (319)
26 cd00116 LRR_RI Leucine-rich re 99.1 1E-11 2.2E-16 122.5 -0.3 123 2-126 31-175 (319)
27 PF14580 LRR_9: Leucine-rich r 99.0 4.4E-10 9.6E-15 97.6 4.9 102 22-127 19-124 (175)
28 PF14580 LRR_9: Leucine-rich r 98.9 3.1E-10 6.7E-15 98.6 1.8 117 6-126 26-150 (175)
29 COG4886 Leucine-rich repeat (L 98.8 3.2E-09 6.9E-14 107.9 5.8 108 15-124 109-217 (394)
30 KOG0532 Leucine-rich repeat (L 98.8 2.2E-10 4.7E-15 112.5 -3.3 172 23-228 76-247 (722)
31 KOG1259 Nischarin, modulator o 98.7 2.7E-09 5.8E-14 96.8 1.5 103 19-124 281-407 (490)
32 KOG0532 Leucine-rich repeat (L 98.7 9.6E-10 2.1E-14 108.1 -3.2 189 26-249 54-245 (722)
33 COG4886 Leucine-rich repeat (L 98.6 2.4E-08 5.1E-13 101.5 5.1 111 10-122 127-238 (394)
34 KOG1259 Nischarin, modulator o 98.6 5.1E-09 1.1E-13 95.0 -1.4 84 39-125 278-361 (490)
35 PLN03150 hypothetical protein; 98.6 8.1E-08 1.7E-12 102.3 7.0 92 23-114 419-512 (623)
36 PF13855 LRR_8: Leucine rich r 98.5 5.9E-08 1.3E-12 69.1 3.1 57 22-78 1-59 (61)
37 KOG3207 Beta-tubulin folding c 98.5 2.2E-08 4.7E-13 95.8 1.0 108 17-126 116-232 (505)
38 PRK15386 type III secretion pr 98.5 4.7E-07 1E-11 88.6 8.7 136 386-555 50-187 (426)
39 PF13855 LRR_8: Leucine rich r 98.5 9.5E-08 2.1E-12 68.0 2.6 57 45-102 1-59 (61)
40 KOG3207 Beta-tubulin folding c 98.4 5.2E-08 1.1E-12 93.2 1.0 124 17-141 141-271 (505)
41 KOG1909 Ran GTPase-activating 98.4 1.1E-08 2.3E-13 95.1 -5.4 253 17-307 25-308 (382)
42 PRK15386 type III secretion pr 98.4 2.9E-06 6.2E-11 83.1 10.7 159 339-534 51-212 (426)
43 KOG0531 Protein phosphatase 1, 98.3 1.4E-07 3E-12 96.1 1.3 105 15-123 88-193 (414)
44 PLN03150 hypothetical protein; 98.3 9.4E-07 2E-11 94.3 5.9 80 47-126 420-500 (623)
45 KOG2120 SCF ubiquitin ligase, 98.3 4.7E-08 1E-12 88.9 -3.3 133 339-483 233-373 (419)
46 KOG2120 SCF ubiquitin ligase, 98.2 2.7E-08 5.9E-13 90.4 -5.9 134 388-532 234-373 (419)
47 KOG1909 Ran GTPase-activating 98.2 1.4E-07 3E-12 88.0 -2.7 125 1-127 37-196 (382)
48 PF12799 LRR_4: Leucine Rich r 98.2 2.1E-06 4.5E-11 55.8 3.5 38 23-60 2-39 (44)
49 KOG4579 Leucine-rich repeat (L 98.1 8.1E-07 1.8E-11 71.5 1.0 105 5-111 33-141 (177)
50 KOG0531 Protein phosphatase 1, 98.1 4.1E-07 8.8E-12 92.7 -1.7 104 20-127 70-173 (414)
51 PF12799 LRR_4: Leucine Rich r 98.1 3.3E-06 7.1E-11 54.9 2.8 39 45-84 1-39 (44)
52 KOG1947 Leucine rich repeat pr 98.0 4.9E-07 1.1E-11 94.7 -2.9 231 317-560 186-442 (482)
53 KOG1859 Leucine-rich repeat pr 98.0 3.4E-07 7.4E-12 93.1 -4.0 109 14-127 179-290 (1096)
54 KOG1859 Leucine-rich repeat pr 98.0 3E-07 6.6E-12 93.4 -5.0 118 19-141 161-279 (1096)
55 KOG1947 Leucine rich repeat pr 97.8 2.2E-06 4.8E-11 89.8 -2.3 234 295-539 186-444 (482)
56 KOG1644 U2-associated snRNP A' 97.8 2.6E-05 5.6E-10 67.5 4.1 101 23-126 43-150 (233)
57 KOG4579 Leucine-rich repeat (L 97.6 9.5E-06 2.1E-10 65.5 -0.8 81 6-87 60-141 (177)
58 KOG1644 U2-associated snRNP A' 97.5 0.00015 3.2E-09 62.9 4.9 62 17-78 59-123 (233)
59 KOG2982 Uncharacterized conser 97.4 2.3E-05 4.9E-10 71.8 -0.9 97 23-122 46-152 (418)
60 KOG3665 ZYG-1-like serine/thre 97.2 0.00021 4.5E-09 76.4 3.6 31 90-122 171-201 (699)
61 KOG2982 Uncharacterized conser 97.0 0.00044 9.5E-09 63.6 2.9 184 339-539 70-266 (418)
62 KOG3665 ZYG-1-like serine/thre 97.0 0.0003 6.5E-09 75.3 2.1 156 359-532 121-285 (699)
63 KOG2123 Uncharacterized conser 96.9 8E-05 1.7E-09 67.6 -2.5 103 19-124 16-125 (388)
64 KOG2123 Uncharacterized conser 96.7 0.00018 3.9E-09 65.4 -2.3 86 42-131 16-103 (388)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00076 1.7E-08 61.2 1.5 104 17-123 38-150 (260)
66 KOG2739 Leucine-rich acidic nu 96.3 0.0017 3.7E-08 59.0 1.2 87 15-102 58-153 (260)
67 COG5238 RNA1 Ran GTPase-activa 96.1 0.0018 3.9E-08 58.9 0.8 88 18-106 26-133 (388)
68 COG5238 RNA1 Ran GTPase-activa 96.0 0.00045 9.8E-09 62.7 -3.7 199 40-249 25-253 (388)
69 PF00560 LRR_1: Leucine Rich R 95.8 0.003 6.4E-08 34.0 0.4 15 47-61 2-16 (22)
70 PF00560 LRR_1: Leucine Rich R 95.4 0.0068 1.5E-07 32.6 0.8 22 23-44 1-22 (22)
71 KOG3864 Uncharacterized conser 95.1 0.0017 3.7E-08 56.6 -3.2 87 390-487 103-190 (221)
72 KOG0473 Leucine-rich repeat pr 95.0 0.002 4.4E-08 57.2 -3.2 85 17-102 37-121 (326)
73 PF13504 LRR_7: Leucine rich r 94.5 0.023 5.1E-07 28.3 1.3 14 47-60 3-16 (17)
74 KOG0473 Leucine-rich repeat pr 94.3 0.0023 5E-08 56.9 -4.4 73 9-81 52-124 (326)
75 PF13306 LRR_5: Leucine rich r 94.3 0.066 1.4E-06 44.4 4.5 102 14-122 3-109 (129)
76 PF13306 LRR_5: Leucine rich r 93.8 0.54 1.2E-05 38.8 9.2 102 383-503 7-110 (129)
77 KOG3864 Uncharacterized conser 93.4 0.019 4.2E-07 50.2 -0.3 67 356-427 121-187 (221)
78 PF13504 LRR_7: Leucine rich r 93.2 0.062 1.3E-06 26.7 1.5 17 22-38 1-17 (17)
79 smart00370 LRR Leucine-rich re 88.9 0.36 7.8E-06 27.0 2.0 19 45-63 2-20 (26)
80 smart00369 LRR_TYP Leucine-ric 88.9 0.36 7.8E-06 27.0 2.0 19 45-63 2-20 (26)
81 smart00367 LRR_CC Leucine-rich 87.7 0.32 6.9E-06 27.2 1.2 17 522-538 2-18 (26)
82 smart00369 LRR_TYP Leucine-ric 85.3 0.57 1.2E-05 26.1 1.4 20 21-40 1-20 (26)
83 smart00370 LRR Leucine-rich re 85.3 0.57 1.2E-05 26.1 1.4 20 21-40 1-20 (26)
84 PF13516 LRR_6: Leucine Rich r 74.6 1.7 3.6E-05 23.7 0.9 14 45-58 2-15 (24)
85 smart00364 LRR_BAC Leucine-ric 72.3 2.2 4.8E-05 23.8 1.0 17 46-62 3-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 69.8 3.6 7.7E-05 23.1 1.5 16 45-60 2-17 (26)
87 smart00368 LRR_RI Leucine rich 55.9 8.1 0.00018 22.0 1.4 14 45-58 2-15 (28)
88 KOG4308 LRR-containing protein 38.0 3.3 7.2E-05 42.8 -3.7 118 10-127 160-301 (478)
89 KOG4308 LRR-containing protein 37.1 2.9 6.4E-05 43.2 -4.2 125 2-128 123-274 (478)
90 KOG3763 mRNA export factor TAP 31.9 26 0.00056 36.3 1.5 60 43-102 216-280 (585)
91 PF05725 FNIP: FNIP Repeat; I 29.6 75 0.0016 20.3 3.0 31 522-553 12-42 (44)
92 KOG3763 mRNA export factor TAP 29.4 34 0.00073 35.4 1.9 35 21-55 217-254 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.3e-37 Score=346.29 Aligned_cols=497 Identities=19% Similarity=0.177 Sum_probs=282.4
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCC-cccccc-ccccccceeeccCCCcc-cccHHHHccccCceeeccC
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRIS-ELPDSV-GDLRYLRHLNLSGTEIK-TLPESVNKLYNLHTLLLED 77 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~l~~~~-~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~ 77 (567)
|++|+++| .+++.|..+++|++|++++|+++ .+|..+ ..+++|++|++++|.++ .+|. +.+++|++|++++
T Consensus 76 L~~~~i~~----~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~ 149 (968)
T PLN00113 76 LSGKNISG----KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN 149 (968)
T ss_pred ecCCCccc----cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcC
Confidence 46777887 66778899999999999999887 677654 58899999999988886 3443 4678888888888
Q ss_pred ccchhhcccccccccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccc
Q 044062 78 CDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENL 157 (567)
Q Consensus 78 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L 157 (567)
|.....+|..++.+++|++|++++|.....+|..+.++++|+.|++..+... ...+..+++++ +|
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~--------------~L 214 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-GQIPRELGQMK--------------SL 214 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc-CcCChHHcCcC--------------Cc
Confidence 8444567777888888888888888444577777888888888877655321 22334455555 66
Q ss_pred cceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCC-CCcccccCCCCCccceEEEecCCCcccCC-CCC
Q 044062 158 RELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGT-KFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVG 235 (567)
Q Consensus 158 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 235 (567)
+.|++++|.... .....+..+++|++|++.++... .+|..+. .+++|+.|++++|.+.+..| .+.
T Consensus 215 ~~L~L~~n~l~~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~ 281 (968)
T PLN00113 215 KWIYLGYNNLSG-----------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQNKLSGPIPPSIF 281 (968)
T ss_pred cEEECcCCccCC-----------cCChhHhcCCCCCEEECcCceeccccChhHh--CCCCCCEEECcCCeeeccCchhHh
Confidence 666666542211 11223445566777777666543 3344444 46667777777666555554 355
Q ss_pred CCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCC
Q 044062 236 QLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFP 315 (567)
Q Consensus 236 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 315 (567)
.+++|++|++++|......+..+. .+++|+.|+++++..... .+..+..+++|+.|++++| .+.+.+|
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~------~l~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~p 349 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVI------QLQNLEILHLFSNNFTGK-----IPVALTSLPRLQVLQLWSN-KFSGEIP 349 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHc------CCCCCcEEECCCCccCCc-----CChhHhcCCCCCEEECcCC-CCcCcCC
Confidence 666777777766643333332221 256666666665432111 1122245666666666663 4444444
Q ss_pred C---CCCcccEEEEecchh---hhhhcCCCCCcceEEecCCCCccc----cccCCCCCcccccccCCCccccccCCCCCC
Q 044062 316 E---HLPALQMLVIQECKE---LLVSITSLPALCKLEIDGCKKVVW----RSATDHLGSQNSVVCRDTSNQVFLAGPLKP 385 (567)
Q Consensus 316 ~---~l~~L~~L~i~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 385 (567)
. .+++|+.|++++|.. +...+..+++|+.|++++|..... ...+++|+.|++.+|......+ ..+.
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p----~~~~ 425 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP----SEFT 425 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC----hhHh
Confidence 3 345666666666542 223334455666666666654332 3445566666666665444333 3344
Q ss_pred CCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCccc
Q 044062 386 RIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKL 465 (567)
Q Consensus 386 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~ 465 (567)
.+++|+.++++++. +... ....+ ..+++|++|++++|.....++... .. ++|+.|++++|.....+
T Consensus 426 ~l~~L~~L~Ls~N~-l~~~--~~~~~-~~l~~L~~L~L~~n~~~~~~p~~~------~~----~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 426 KLPLVYFLDISNNN-LQGR--INSRK-WDMPSLQMLSLARNKFFGGLPDSF------GS----KRLENLDLSRNQFSGAV 491 (968)
T ss_pred cCCCCCEEECcCCc-ccCc--cChhh-ccCCCCcEEECcCceeeeecCccc------cc----ccceEEECcCCccCCcc
Confidence 55666666666654 2222 11122 345566666666544333222211 11 45666666655533344
Q ss_pred ccCCCCCCCccEEEEccCCCCcccCCc-CCCCCccEEEEccCccccccccccccCCCCCccEEEcccccccccccccCcc
Q 044062 466 PQSSLGLNSLRDIEIYKCSSLVSFPEV-ALPSKLRKIRISSCDALKSLPEAWMCDTNSSLEILSIKHCCSLTYIAEAQLP 544 (567)
Q Consensus 466 ~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~ 544 (567)
|..+..+++|++|++++|.....+|.. ..+++|+.|++++|.....+|..+..+ ++|++|++++|.....+|..-..
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~l~~ 569 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM--PVLSQLDLSQNQLSGEIPKNLGN 569 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc--ccCCEEECCCCcccccCChhHhc
Confidence 555555556666666654333333322 224556666665544333455455555 55666666655433333321111
Q ss_pred -cccCeEEEeeCCCCCccCc
Q 044062 545 -LSLKQLVIHNCDNMRTLTV 563 (567)
Q Consensus 545 -~~L~~l~~~~c~~l~~l~~ 563 (567)
++|+++++++|+-...+|.
T Consensus 570 l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 570 VESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CcccCEEeccCCcceeeCCC
Confidence 4556666665555555554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.2e-36 Score=339.02 Aligned_cols=492 Identities=17% Similarity=0.170 Sum_probs=377.3
Q ss_pred CCccccccchhhhhhhhh-hccccceEEEecCCCCCc-cccccccccccceeeccCCCcc-cccHHHHccccCceeeccC
Q 044062 1 MLSNRLHGYLALSILPKL-FKLQRLRVFSLRGYRISE-LPDSVGDLRYLRHLNLSGTEIK-TLPESVNKLYNLHTLLLED 77 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~-l~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~ 77 (567)
|++|+++| .+|..+ ..+++|++|++++|.++. +|. ..+++|++|++++|.+. .+|..++.+++|++|++++
T Consensus 100 Ls~n~~~~----~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 100 LSNNQLSG----PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173 (968)
T ss_pred CCCCccCC----cCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc
Confidence 57888887 788865 499999999999999874 443 46889999999999998 6799999999999999999
Q ss_pred ccchhhcccccccccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccc
Q 044062 78 CDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENL 157 (567)
Q Consensus 78 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L 157 (567)
|...+.+|..++++++|++|++++|.....+|..++++++|+.|++..+... ...+..+.+++ +|
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~--------------~L 238 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS-GEIPYEIGGLT--------------SL 238 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC-CcCChhHhcCC--------------CC
Confidence 9655678888999999999999999555578888999999999987665432 23344566677 89
Q ss_pred cceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCC-CCcccccCCCCCccceEEEecCCCcccCC-CCC
Q 044062 158 RELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGT-KFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVG 235 (567)
Q Consensus 158 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 235 (567)
++|++++|.... .....+..+++|+.|.+.++... .+|..+. .+++|+.|++++|.+.+.+| .+.
T Consensus 239 ~~L~L~~n~l~~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 239 NHLDLVYNNLTG-----------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CEEECcCceecc-----------ccChhHhCCCCCCEEECcCCeeeccCchhHh--hccCcCEEECcCCeeccCCChhHc
Confidence 999998753321 12334667789999999988764 4565555 68999999999999877776 467
Q ss_pred CCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCC
Q 044062 236 QLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFP 315 (567)
Q Consensus 236 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 315 (567)
.+++|++|++++|......+..+. .+++|+.|+++++.... ..+..+..+++|+.|++++| .+.+.+|
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~------~l~~L~~L~L~~n~l~~-----~~p~~l~~~~~L~~L~Ls~n-~l~~~~p 373 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALT------SLPRLQVLQLWSNKFSG-----EIPKNLGKHNNLTVLDLSTN-NLTGEIP 373 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHh------cCCCCCEEECcCCCCcC-----cCChHHhCCCCCcEEECCCC-eeEeeCC
Confidence 899999999999876555544332 28999999999874321 22333467899999999994 6666666
Q ss_pred C---CCCcccEEEEecchh---hhhhcCCCCCcceEEecCCCCccc----cccCCCCCcccccccCCCccccccCCCCCC
Q 044062 316 E---HLPALQMLVIQECKE---LLVSITSLPALCKLEIDGCKKVVW----RSATDHLGSQNSVVCRDTSNQVFLAGPLKP 385 (567)
Q Consensus 316 ~---~l~~L~~L~i~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 385 (567)
. .+++|+.|++++|.. +...+..+++|+.|++++|..... ...++.|+.|++++|......+ ....
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~ 449 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN----SRKW 449 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC----hhhc
Confidence 4 457899999998863 345567789999999999986543 5678899999999998776555 4456
Q ss_pred CCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCccc
Q 044062 386 RIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKL 465 (567)
Q Consensus 386 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~ 465 (567)
.+++|+.|++++|.....+ + .. ...++|+.|++++| .+.......+ ..+ ++|+.|++++|.....+
T Consensus 450 ~l~~L~~L~L~~n~~~~~~--p-~~--~~~~~L~~L~ls~n-~l~~~~~~~~----~~l----~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGL--P-DS--FGSKRLENLDLSRN-QFSGAVPRKL----GSL----SELMQLKLSENKLSGEI 515 (968)
T ss_pred cCCCCcEEECcCceeeeec--C-cc--cccccceEEECcCC-ccCCccChhh----hhh----hccCEEECcCCcceeeC
Confidence 7899999999999854433 2 22 34589999999985 4443333333 455 89999999999866688
Q ss_pred ccCCCCCCCccEEEEccCCCCcccCCc-CCCCCccEEEEccCccccccccccccCCCCCccEEEcccccccccccccCcc
Q 044062 466 PQSSLGLNSLRDIEIYKCSSLVSFPEV-ALPSKLRKIRISSCDALKSLPEAWMCDTNSSLEILSIKHCCSLTYIAEAQLP 544 (567)
Q Consensus 466 ~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~ 544 (567)
|..+..+++|++|++++|.....++.. ..+++|+.|++++|.....+|..+..+ ++|++|++++|+....+|..+..
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV--ESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC--cccCEEeccCCcceeeCCCcchh
Confidence 888999999999999997544445432 237899999998887766888888888 89999999999877777765554
Q ss_pred cccCeEEEeeCCCC
Q 044062 545 LSLKQLVIHNCDNM 558 (567)
Q Consensus 545 ~~L~~l~~~~c~~l 558 (567)
.++....+.+++.+
T Consensus 594 ~~~~~~~~~~n~~l 607 (968)
T PLN00113 594 LAINASAVAGNIDL 607 (968)
T ss_pred cccChhhhcCCccc
Confidence 55555555555544
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=8.4e-28 Score=222.65 Aligned_cols=447 Identities=19% Similarity=0.218 Sum_probs=242.8
Q ss_pred hhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhccccccccc
Q 044062 13 SILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLT 92 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~ 92 (567)
.+-+++.++.-+.++++++|++..+|+++.++..+..|+.+.|.+..+|+.+..+..|+.++.++| .+.++|++++.+.
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~ 137 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLL 137 (565)
T ss_pred hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHh
Confidence 355566666666666666666666666666666666666666666666666666666666666665 5555666666666
Q ss_pred ccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCC
Q 044062 93 KLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSS 172 (567)
Q Consensus 93 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 172 (567)
.|+.++.++| .+..+|.++..+.++..+.+.++.. +
T Consensus 138 ~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l-----------------------------~-------------- 173 (565)
T KOG0472|consen 138 DLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKL-----------------------------K-------------- 173 (565)
T ss_pred hhhhhhcccc-ccccCchHHHHHHHHHHhhccccch-----------------------------h--------------
Confidence 6666666666 5666666666666665554433311 0
Q ss_pred CccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCccee
Q 044062 173 SREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVK 252 (567)
Q Consensus 173 ~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 252 (567)
...+....++.|++++...+....+|+.++ .+.+|+.|++..|. +..+|.+.++..|+++.+..| .++
T Consensus 174 --------~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg--~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~N-~i~ 241 (565)
T KOG0472|consen 174 --------ALPENHIAMKRLKHLDCNSNLLETLPPELG--GLESLELLYLRRNK-IRFLPEFPGCSLLKELHVGEN-QIE 241 (565)
T ss_pred --------hCCHHHHHHHHHHhcccchhhhhcCChhhc--chhhhHHHHhhhcc-cccCCCCCccHHHHHHHhccc-HHH
Confidence 011111113556666666666677777776 68888888888877 667778888888888888766 566
Q ss_pred eecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCCC--cccEEEEecch
Q 044062 253 RLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHLP--ALQMLVIQECK 330 (567)
Q Consensus 253 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~--~L~~L~i~~~~ 330 (567)
.++.+...+ ++++..|+++++ ++++. |..+..+.+|+.||+++ +.++ ..|-.+. .|+.|.+.+++
T Consensus 242 ~lpae~~~~-----L~~l~vLDLRdN-klke~-----Pde~clLrsL~rLDlSN-N~is-~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 242 MLPAEHLKH-----LNSLLVLDLRDN-KLKEV-----PDEICLLRSLERLDLSN-NDIS-SLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred hhHHHHhcc-----cccceeeecccc-ccccC-----chHHHHhhhhhhhcccC-Cccc-cCCcccccceeeehhhcCCc
Confidence 666666433 778888888765 23333 22235567788888877 5666 4443222 34444445543
Q ss_pred hh--h-hhcCC--CCCcceEEe-cCCCCccccccCCCCCcccccccCCCcccccc-C---CCCCCCCCCcCeEEEccCCC
Q 044062 331 EL--L-VSITS--LPALCKLEI-DGCKKVVWRSATDHLGSQNSVVCRDTSNQVFL-A---GPLKPRIPKLEELEIKNIKN 400 (567)
Q Consensus 331 ~l--~-~~~~~--~~~L~~L~l-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~---~~~~~~l~~L~~L~l~~~~~ 400 (567)
.- . ..++. -.-|++|.- ..+... +....-...... . .+....+-+.+.|+++.-+
T Consensus 309 lrTiRr~ii~~gT~~vLKyLrs~~~~dgl--------------S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q- 373 (565)
T KOG0472|consen 309 LRTIRREIISKGTQEVLKYLRSKIKDDGL--------------SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ- 373 (565)
T ss_pred hHHHHHHHHcccHHHHHHHHHHhhccCCC--------------CCCcccccccCCCCCCcccchhhhhhhhhhcccccc-
Confidence 11 0 00000 001111110 000000 000000000000 0 0111123345555555533
Q ss_pred ccccccccCccccCC--CCccEEEEcCCCCccccchhhh-------------------hHHHhhhhhccCceeEEEccCC
Q 044062 401 ETYIWKSHNGLLQDI--CSLKRLTIDSCPKLQSLVAEEE-------------------KDQQQQLCELSCRLEYLGLRSC 459 (567)
Q Consensus 401 l~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~~~~~~-------------------~~~~~~l~~~~~~L~~L~l~~c 459 (567)
++.+ |.+.| ... .-...+++++ +.+..++.... ...+..+ ++|..|+++++
T Consensus 374 lt~V--PdEVf-ea~~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l----~kLt~L~L~NN 445 (565)
T KOG0472|consen 374 LTLV--PDEVF-EAAKSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL----QKLTFLDLSNN 445 (565)
T ss_pred cccC--CHHHH-HHhhhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh----hcceeeecccc
Confidence 4443 33332 111 1133444444 33332221100 0011233 67788888875
Q ss_pred CCCcccccCCCCCCCccEEEEccCCCCcccCCcCCCCCccEEEEccCcccccccc-ccccCCCCCccEEEcccccccccc
Q 044062 460 EGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEVALPSKLRKIRISSCDALKSLPE-AWMCDTNSSLEILSIKHCCSLTYI 538 (567)
Q Consensus 460 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~~~L~~L~l~~c~~l~~~ 538 (567)
. +.++|..++.+..|++|+++. +....+|....-....++.+...+++..+++ ++.++ .+|.+|++.+ +.++.+
T Consensus 446 ~-Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm--~nL~tLDL~n-Ndlq~I 520 (565)
T KOG0472|consen 446 L-LNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM--RNLTTLDLQN-NDLQQI 520 (565)
T ss_pred h-hhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHHhhhh--hhcceeccCC-CchhhC
Confidence 5 777887777777888888887 3555555443333333333445566776665 36666 7788888875 567777
Q ss_pred ccc-CcccccCeEEEeeCCC
Q 044062 539 AEA-QLPLSLKQLVIHNCDN 557 (567)
Q Consensus 539 ~~~-~~~~~L~~l~~~~c~~ 557 (567)
|++ |-.++|++|.++|+|-
T Consensus 521 Pp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ChhhccccceeEEEecCCcc
Confidence 753 2228888888887653
No 4
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-26 Score=235.69 Aligned_cols=445 Identities=22% Similarity=0.232 Sum_probs=236.6
Q ss_pred cchhhhhhh-hhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhccc
Q 044062 8 GYLALSILP-KLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCA 86 (567)
Q Consensus 8 ~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 86 (567)
.|.....|- ...+.-+|++|++++|+++.+|..+..+++|+.|++++|.+...|..++++.+|++|+|.+| .+..+|.
T Consensus 30 ~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~ 108 (1081)
T KOG0618|consen 30 RNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPA 108 (1081)
T ss_pred ccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCch
Confidence 333344444 45666679999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred ccccccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeee
Q 044062 87 DMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTC 166 (567)
Q Consensus 87 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~ 166 (567)
++..+++|+.|++++| .+..+|.-+..+..+..+...++.. ...+... ..+.+++..+.
T Consensus 109 ~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~--~~~lg~~------------------~ik~~~l~~n~ 167 (1081)
T KOG0618|consen 109 SISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEK--IQRLGQT------------------SIKKLDLRLNV 167 (1081)
T ss_pred hHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchh--hhhhccc------------------cchhhhhhhhh
Confidence 9999999999999999 8999999899888888886544411 0111110 11111111110
Q ss_pred cCCCCCCccchhhhhhhccCCCCCCCc-EEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEE
Q 044062 167 STDGSSSREAETEMGVLDMLKPHKNLE-QFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTV 245 (567)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 245 (567)
... ...... ..++ .+++.++..... .. . .+.+|+.+....+....... .-++|+.|+.
T Consensus 168 l~~-----------~~~~~i---~~l~~~ldLr~N~~~~~-dl-s--~~~~l~~l~c~rn~ls~l~~---~g~~l~~L~a 226 (1081)
T KOG0618|consen 168 LGG-----------SFLIDI---YNLTHQLDLRYNEMEVL-DL-S--NLANLEVLHCERNQLSELEI---SGPSLTALYA 226 (1081)
T ss_pred ccc-----------chhcch---hhhheeeecccchhhhh-hh-h--hccchhhhhhhhcccceEEe---cCcchheeee
Confidence 000 001111 1111 244444333210 00 0 23333333333333211110 1234444444
Q ss_pred eCCcceeeecccccCCCCCCCCCCcceeeecccc--cccccccCCCCCcccCCCCccEEEEcCCCCcccCCCC---CCCc
Q 044062 246 RGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQ--EWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPE---HLPA 320 (567)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~l~~ 320 (567)
+.|...+... .+. ..+|++++++.+. .+.+| +..+++|+.+.+.+ +.+. .+|. ...+
T Consensus 227 ~~n~l~~~~~-~p~-------p~nl~~~dis~n~l~~lp~w--------i~~~~nle~l~~n~-N~l~-~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 227 DHNPLTTLDV-HPV-------PLNLQYLDISHNNLSNLPEW--------IGACANLEALNANH-NRLV-ALPLRISRITS 288 (1081)
T ss_pred ccCcceeecc-ccc-------cccceeeecchhhhhcchHH--------HHhcccceEecccc-hhHH-hhHHHHhhhhh
Confidence 4443321111 110 2344555544331 11111 13455555555544 3333 2332 1234
Q ss_pred ccEEEEecch--hhhhhcCCCCCcceEEecCCCCccc----cccCC-CCCcccccccCCCccccccCCCCCCCCCCcCeE
Q 044062 321 LQMLVIQECK--ELLVSITSLPALCKLEIDGCKKVVW----RSATD-HLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEEL 393 (567)
Q Consensus 321 L~~L~i~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~----~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 393 (567)
|+.|.+..|+ .+......+..|++|+++.|..... ..... +++.|+.+.++.-.... ..-..++.|+.|
T Consensus 289 L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~----~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 289 LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS----YEENNHAALQEL 364 (1081)
T ss_pred HHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc----ccchhhHHHHHH
Confidence 4444444443 1122222344555555555543332 11111 13333333332211111 011223456666
Q ss_pred EEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCC
Q 044062 394 EIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLN 473 (567)
Q Consensus 394 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 473 (567)
.+.++.--...|... ..+.+|+.|++++ +.+..++...+ ..+ ..|++|+++++. ++.+|..+..++
T Consensus 365 ylanN~Ltd~c~p~l----~~~~hLKVLhLsy-NrL~~fpas~~----~kl----e~LeeL~LSGNk-L~~Lp~tva~~~ 430 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVL----VNFKHLKVLHLSY-NRLNSFPASKL----RKL----EELEELNLSGNK-LTTLPDTVANLG 430 (1081)
T ss_pred HHhcCcccccchhhh----ccccceeeeeecc-cccccCCHHHH----hch----HHhHHHhcccch-hhhhhHHHHhhh
Confidence 666555222222222 3446677777766 66666666555 444 666677777643 666666666777
Q ss_pred CccEEEEccCCCCcccCCcCCCCCccEEEEccCccccccccccccCCCCCccEEEcccccc
Q 044062 474 SLRDIEIYKCSSLVSFPEVALPSKLRKIRISSCDALKSLPEAWMCDTNSSLEILSIKHCCS 534 (567)
Q Consensus 474 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~~~L~~L~l~~c~~ 534 (567)
.|++|...+ +.+..+|+...+++|+++|+ +|+.++.+-- ....+.|+||+|+++|+..
T Consensus 431 ~L~tL~ahs-N~l~~fPe~~~l~qL~~lDl-S~N~L~~~~l-~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 431 RLHTLRAHS-NQLLSFPELAQLPQLKVLDL-SCNNLSEVTL-PEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhHHHhhcC-CceeechhhhhcCcceEEec-ccchhhhhhh-hhhCCCcccceeeccCCcc
Confidence 777776666 45666665555667777777 5666664310 1112225677777776554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=3.8e-25 Score=214.23 Aligned_cols=100 Identities=18% Similarity=0.277 Sum_probs=62.0
Q ss_pred cceEEEecCCCCCccc-cccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccc-cccccccceeecc
Q 044062 23 RLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKLHHLNNS 100 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~l~ 100 (567)
..++|++++|.++++. ..|.++++|+.+++.+|.++.+|.......||+.|+|.+| .+.++.++ +..++.|+.||++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 4556777777666653 4456677777777777777777666666666777777766 55555433 6666677777777
Q ss_pred Ccccccccccc-ccccccccccCce
Q 044062 101 NTYSLEEMPVG-IGKLTCLQTLSNF 124 (567)
Q Consensus 101 ~~~~~~~lp~~-~~~l~~L~~L~~~ 124 (567)
.| .+..+|.. +.+-.++++|++.
T Consensus 158 rN-~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 158 RN-LISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred hc-hhhcccCCCCCCCCCceEEeec
Confidence 76 66666533 4444455555443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=7.5e-25 Score=212.16 Aligned_cols=375 Identities=17% Similarity=0.188 Sum_probs=209.8
Q ss_pred cceEEEecCCCCCccc-cccccccc--cceeeccCCCcccc-cHHHHccccCceeeccCccchhhcccccccccccceee
Q 044062 23 RLRVFSLRGYRISELP-DSVGDLRY--LRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLN 98 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~-~~~~~l~~--L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ 98 (567)
+.+.|+.++..+..+. ..+..+.- -+.||+++|.+.++ +..|.++++|+.+++.+| .++.+|...+...+|+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEe
Confidence 4566888888776552 33333322 45599999999977 777999999999999998 8999988666677899999
Q ss_pred ccCccccccccc-cccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccch
Q 044062 99 NSNTYSLEEMPV-GIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAE 177 (567)
Q Consensus 99 l~~~~~~~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 177 (567)
+.+| .+..+.. ++..++.|+.|+++.+...... ..
T Consensus 132 L~~N-~I~sv~se~L~~l~alrslDLSrN~is~i~-~~------------------------------------------ 167 (873)
T KOG4194|consen 132 LRHN-LISSVTSEELSALPALRSLDLSRNLISEIP-KP------------------------------------------ 167 (873)
T ss_pred eecc-ccccccHHHHHhHhhhhhhhhhhchhhccc-CC------------------------------------------
Confidence 9999 7776653 4778888888876655321110 01
Q ss_pred hhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCcceeee-c
Q 044062 178 TEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRL-G 255 (567)
Q Consensus 178 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~ 255 (567)
.+..-.++++|++.++.++.+....++ ++.+|..|.+++|.+....+ .+..++.|+.|++..|. ++.+ .
T Consensus 168 -------sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ 238 (873)
T KOG4194|consen 168 -------SFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEG 238 (873)
T ss_pred -------CCCCCCCceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehh
Confidence 112223455555555555544333222 44455555555555333222 24445556666655552 3333 2
Q ss_pred ccccCCCCCCCCCCcceeeecccc--cccccccCCCCCcccCCCCccEEEEcCCCCcccCCCC---CCCcccEEEEecch
Q 044062 256 SEFYGDDSPIPFPCLETLRFEVMQ--EWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPE---HLPALQMLVIQECK 330 (567)
Q Consensus 256 ~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~l~~L~~L~i~~~~ 330 (567)
.+|.+ +++|+.|.+..+. .+++-.+ -.+.++++|++.. +++...-.. ++.+|+.|+++.|.
T Consensus 239 ltFqg------L~Sl~nlklqrN~I~kL~DG~F-------y~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 239 LTFQG------LPSLQNLKLQRNDISKLDDGAF-------YGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hhhcC------chhhhhhhhhhcCcccccCcce-------eeecccceeeccc-chhhhhhcccccccchhhhhccchhh
Confidence 23322 5555555554331 1111111 2345555555555 344411111 24555666666554
Q ss_pred hh---hhhcCCCCCcceEEecCCCCccc----cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccc
Q 044062 331 EL---LVSITSLPALCKLEIDGCKKVVW----RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETY 403 (567)
Q Consensus 331 ~l---~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 403 (567)
.- ....+..++|+.|+++.|..... +..+..|+.|.+++|....... ..+..+.+|++|+++++. +..
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e----~af~~lssL~~LdLr~N~-ls~ 379 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE----GAFVGLSSLHKLDLRSNE-LSW 379 (873)
T ss_pred hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh----hHHHHhhhhhhhcCcCCe-EEE
Confidence 21 23444566666666666665443 4445566666666665433222 335556666777666655 221
Q ss_pred cccc-cCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCCCccEEEEc
Q 044062 404 IWKS-HNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIY 481 (567)
Q Consensus 404 ~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~ 481 (567)
.... ...| .++++|+.|.+.+ ++++.++..++ .++ ++|++|++.++...+.-|+.+..+ .|++|.+.
T Consensus 380 ~IEDaa~~f-~gl~~LrkL~l~g-Nqlk~I~krAf----sgl----~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 380 CIEDAAVAF-NGLPSLRKLRLTG-NQLKSIPKRAF----SGL----EALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred EEecchhhh-ccchhhhheeecC-ceeeecchhhh----ccC----cccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 1111 1223 5567777777766 66776666666 555 677777777665333335555555 66666544
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.1e-22 Score=230.26 Aligned_cols=249 Identities=21% Similarity=0.279 Sum_probs=132.4
Q ss_pred CCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCC
Q 044062 213 SFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSE 291 (567)
Q Consensus 213 ~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 291 (567)
.+++|+.|++++|.....+| .++.+++|+.|++++|..++.++... .+++|+.|++++|..+..+.
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-------~l~sL~~L~Lsgc~~L~~~p------ 721 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-------NLKSLYRLNLSGCSRLKSFP------ 721 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-------CCCCCCEEeCCCCCCccccc------
Confidence 35667777777766555555 46667777777777777666665432 16677777777765543322
Q ss_pred cccCCCCccEEEEcCCCCcccCCCC--CCCcccEEEEecchhh--hhhcCCCCCcceEEecCCCCccccccCCCCCcccc
Q 044062 292 GVERFPKLRELDILRCSKLQGTFPE--HLPALQMLVIQECKEL--LVSITSLPALCKLEIDGCKKVVWRSATDHLGSQNS 367 (567)
Q Consensus 292 ~~~~~~~L~~L~l~~c~~l~~~~~~--~l~~L~~L~i~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l 367 (567)
...++|+.|++++ +.+. .+|. .+++|+.|.+.++... ...+...+. ......++|+.|++
T Consensus 722 --~~~~nL~~L~L~~-n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~------------~~~~~~~sL~~L~L 785 (1153)
T PLN03210 722 --DISTNISWLDLDE-TAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTP------------LMTMLSPSLTRLFL 785 (1153)
T ss_pred --cccCCcCeeecCC-Cccc-cccccccccccccccccccchhhccccccccch------------hhhhccccchheeC
Confidence 1235667777766 3454 4443 2455555555543211 000000000 00112245555555
Q ss_pred cccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhc
Q 044062 368 VVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCEL 447 (567)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~ 447 (567)
++|..+..++ ..+.++++|+.|++++|.++..+ +... .+++|++|++++|..+..++..
T Consensus 786 s~n~~l~~lP----~si~~L~~L~~L~Ls~C~~L~~L--P~~~---~L~sL~~L~Ls~c~~L~~~p~~------------ 844 (1153)
T PLN03210 786 SDIPSLVELP----SSIQNLHKLEHLEIENCINLETL--PTGI---NLESLESLDLSGCSRLRTFPDI------------ 844 (1153)
T ss_pred CCCCCccccC----hhhhCCCCCCEEECCCCCCcCee--CCCC---CccccCEEECCCCCcccccccc------------
Confidence 5555544444 33455566666666666555554 3221 3456666666666555544321
Q ss_pred cCceeEEEccCCCCCcccccCCCCCCCccEEEEccCCCCcccCCc-CCCCCccEEEEccCcccccc
Q 044062 448 SCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEV-ALPSKLRKIRISSCDALKSL 512 (567)
Q Consensus 448 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l 512 (567)
+.+|+.|+++++. ++.+|..+..+++|++|++++|++++.++.. ..+++|+.+++++|..++.+
T Consensus 845 ~~nL~~L~Ls~n~-i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 845 STNISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccccCEeECCCCC-CccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 1456666666543 5555555566666666666666666655432 12455666666666655533
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.2e-21 Score=221.85 Aligned_cols=315 Identities=20% Similarity=0.294 Sum_probs=207.9
Q ss_pred CCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCC
Q 044062 190 KNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPC 269 (567)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (567)
.+|+.|.+.++....+|..+. +.+|+.|++.++.+......+..+++|+.|+++++..+..++. +..+++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~---~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-------ls~l~~ 658 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFR---PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-------LSMATN 658 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCC---ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-------cccCCc
Confidence 357888887777777777653 6778888888776443333566778888888887766666553 222678
Q ss_pred cceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCC--CCCcccEEEEecchhhhhhcCCCCCcceEEe
Q 044062 270 LETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPE--HLPALQMLVIQECKELLVSITSLPALCKLEI 347 (567)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~l~~L~~L~i~~~~~l~~~~~~~~~L~~L~l 347 (567)
|++|++.+|..+... +..+..+++|+.|++++|+.+. .+|. .+++|+.|++++|..+........+|+.|++
T Consensus 659 Le~L~L~~c~~L~~l-----p~si~~L~~L~~L~L~~c~~L~-~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L 732 (1153)
T PLN03210 659 LETLKLSDCSSLVEL-----PSSIQYLNKLEDLDMSRCENLE-ILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDL 732 (1153)
T ss_pred ccEEEecCCCCcccc-----chhhhccCCCCEEeCCCCCCcC-ccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeec
Confidence 888888877665433 3334667888888888887777 5554 4677888888887654332233457778888
Q ss_pred cCCCCccc--cccCCCCCcccccccCCCccccc---cCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEE
Q 044062 348 DGCKKVVW--RSATDHLGSQNSVVCRDTSNQVF---LAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLT 422 (567)
Q Consensus 348 ~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 422 (567)
+++..... ...+++|+.|.+.++........ ..+.....+++|+.|++++|+.+..+ +. .+ ..+++|+.|+
T Consensus 733 ~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l--P~-si-~~L~~L~~L~ 808 (1153)
T PLN03210 733 DETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL--PS-SI-QNLHKLEHLE 808 (1153)
T ss_pred CCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc--Ch-hh-hCCCCCCEEE
Confidence 77764333 22456677777666442211100 00011223467888888888766665 33 34 6778888888
Q ss_pred EcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCCCccEEEEccCCCCcccCCc-CCCCCccEE
Q 044062 423 IDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEV-ALPSKLRKI 501 (567)
Q Consensus 423 l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L 501 (567)
+++|+.++.++... .+ ++|+.|++++|..++.+|.. .++|+.|++++ +.++.+|.. ..+++|++|
T Consensus 809 Ls~C~~L~~LP~~~------~L----~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L 874 (1153)
T PLN03210 809 IENCINLETLPTGI------NL----ESLESLDLSGCSRLRTFPDI---STNISDLNLSR-TGIEEVPWWIEKFSNLSFL 874 (1153)
T ss_pred CCCCCCcCeeCCCC------Cc----cccCEEECCCCCcccccccc---ccccCEeECCC-CCCccChHHHhcCCCCCEE
Confidence 88888877776432 22 78888888888877776643 35788888887 466666643 236788888
Q ss_pred EEccCccccccccccccCCCCCccEEEcccccccccccc
Q 044062 502 RISSCDALKSLPEAWMCDTNSSLEILSIKHCCSLTYIAE 540 (567)
Q Consensus 502 ~l~~c~~l~~l~~~~~~l~~~~L~~L~l~~c~~l~~~~~ 540 (567)
++++|+.++.+|.....+ ++|+.+++++|++++.++.
T Consensus 875 ~L~~C~~L~~l~~~~~~L--~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKL--KHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ECCCCCCcCccCcccccc--cCCCeeecCCCcccccccC
Confidence 888888888887766666 7788888888888876553
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2.4e-24 Score=219.55 Aligned_cols=421 Identities=21% Similarity=0.209 Sum_probs=263.6
Q ss_pred hhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccc
Q 044062 10 LALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMG 89 (567)
Q Consensus 10 ~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~ 89 (567)
.+...|..+..+.+|+.|+++.|.+..+|.+...+++|+.|.|.+|.++.+|.++..+++|++|+++.| ....+|.-+.
T Consensus 56 ~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~ 134 (1081)
T KOG0618|consen 56 QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIE 134 (1081)
T ss_pred ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh-ccCCCchhHH
Confidence 333589999999999999999999999998999999999999999999999999999999999999999 7888888899
Q ss_pred cccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCC
Q 044062 90 NLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTD 169 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~ 169 (567)
.++.++.+.+++|.++..++... .+++++..... ....+.++.+++ . .+++++|...
T Consensus 135 ~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l-~~~~~~~i~~l~--------------~--~ldLr~N~~~- 191 (1081)
T KOG0618|consen 135 VLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVL-GGSFLIDIYNLT--------------H--QLDLRYNEME- 191 (1081)
T ss_pred hhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhc-ccchhcchhhhh--------------e--eeecccchhh-
Confidence 99999999999985554444322 33333222211 111122222222 1 2455443221
Q ss_pred CCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCc
Q 044062 170 GSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMS 249 (567)
Q Consensus 170 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 249 (567)
...+..+.+|+.+....+....+.. +-.+|+.|+.+.|...... ....-.+|++++++.+.
T Consensus 192 -------------~~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 192 -------------VLDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNN 252 (1081)
T ss_pred -------------hhhhhhccchhhhhhhhcccceEEe-----cCcchheeeeccCcceeec-cccccccceeeecchhh
Confidence 0112222333333333332222111 2344555555555544222 22223455666665542
Q ss_pred ceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCC---CCCCcccEEEE
Q 044062 250 RVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFP---EHLPALQMLVI 326 (567)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~i 326 (567)
...++ ++... +++|+.+...++.- . +++..+....+|+++.+..| .++ .+| ..+..|+.|++
T Consensus 253 -l~~lp-~wi~~-----~~nle~l~~n~N~l-~-----~lp~ri~~~~~L~~l~~~~n-el~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 253 -LSNLP-EWIGA-----CANLEALNANHNRL-V-----ALPLRISRITSLVSLSAAYN-ELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred -hhcch-HHHHh-----cccceEecccchhH-H-----hhHHHHhhhhhHHHHHhhhh-hhh-hCCCcccccceeeeeee
Confidence 33333 33222 55666665554321 1 11111233455555555552 444 222 23555666666
Q ss_pred ecchhh--hh-hcCCCC-CcceEEecCCCCccc----cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccC
Q 044062 327 QECKEL--LV-SITSLP-ALCKLEIDGCKKVVW----RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNI 398 (567)
Q Consensus 327 ~~~~~l--~~-~~~~~~-~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 398 (567)
..+... .. .+.... .++.|..+.++..+. -...+.|+.|++.+|...+..+ +.+.++.+|+.|+++++
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~----p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF----PVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch----hhhccccceeeeeeccc
Confidence 555311 11 111111 144444444443333 2345678888888888777666 67888999999999998
Q ss_pred CCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCCCccEE
Q 044062 399 KNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDI 478 (567)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 478 (567)
. +..+ +...+ ..+..|++|.++| ++++.++.... .+ +.|+.|...++ .+..+| .+..++.|+.+
T Consensus 394 r-L~~f--pas~~-~kle~LeeL~LSG-NkL~~Lp~tva-----~~----~~L~tL~ahsN-~l~~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 394 R-LNSF--PASKL-RKLEELEELNLSG-NKLTTLPDTVA-----NL----GRLHTLRAHSN-QLLSFP-ELAQLPQLKVL 457 (1081)
T ss_pred c-cccC--CHHHH-hchHHhHHHhccc-chhhhhhHHHH-----hh----hhhHHHhhcCC-ceeech-hhhhcCcceEE
Confidence 7 7766 55455 8899999999999 99999986543 33 88999977764 477888 78889999999
Q ss_pred EEccCCCCcccC-CcCCC-CCccEEEEccCccc
Q 044062 479 EIYKCSSLVSFP-EVALP-SKLRKIRISSCDAL 509 (567)
Q Consensus 479 ~l~~c~~l~~~~-~~~~~-~~L~~L~l~~c~~l 509 (567)
|++. ++++.+. ....+ ++|+.|+++|+..+
T Consensus 458 DlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 458 DLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred eccc-chhhhhhhhhhCCCcccceeeccCCccc
Confidence 9995 6777653 22345 89999999998764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=1.1e-24 Score=202.22 Aligned_cols=439 Identities=20% Similarity=0.231 Sum_probs=228.7
Q ss_pred hhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccc
Q 044062 12 LSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNL 91 (567)
Q Consensus 12 ~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 91 (567)
..+|+.+.++..++.++.++|+++.+|+++..+..|+.|+.+.|.+..+|++++.+..|+.++..+| ++.++|+.++.+
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~ 159 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNL 159 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHH
Confidence 3477777777777777777777777777777777777777777777777777777777777776666 666666666666
Q ss_pred cccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccc----e---eeccccc-ccccceEEE
Q 044062 92 TKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGT----L---EISKLEN-ENLRELLLR 163 (567)
Q Consensus 92 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~----~---~~~~~~~-~~L~~l~l~ 163 (567)
.+|..+++.+| .+..+|++.-+++.|++|+...+.- +..+++++.+..+... . .+.++.+ ..|+++++.
T Consensus 160 ~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 160 SKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG 236 (565)
T ss_pred HHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc
Confidence 66666666666 6666666544566666665333221 2233344444411100 0 0000000 133333332
Q ss_pred eeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEE
Q 044062 164 WTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHL 243 (567)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 243 (567)
.| +.+.-.-+.++.+.++..|++.++..+.+|..+- -+.+|++||+++|.+....+.++++ .|+.|
T Consensus 237 ~N-----------~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 237 EN-----------QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL-HLKFL 302 (565)
T ss_pred cc-----------HHHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc-eeeeh
Confidence 21 0000111224456777777777777777776554 4666777777777755555567777 77777
Q ss_pred EEeCCcceeeecccccCCCCCCCCCCcceeeec----cccc---ccccccC---CCCCcccCCCCccEEEEcCCCCcccC
Q 044062 244 TVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFE----VMQE---WEDWIPH---GSSEGVERFPKLRELDILRCSKLQGT 313 (567)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~---~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~l~~~ 313 (567)
.+.||+.-+ +-.+....+ .-.-||+|.=. +... -+..... ..........+.+.|++++ .+++ .
T Consensus 303 ~leGNPlrT-iRr~ii~~g---T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt-~ 376 (565)
T KOG0472|consen 303 ALEGNPLRT-IRREIISKG---TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLT-L 376 (565)
T ss_pred hhcCCchHH-HHHHHHccc---HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccc-c
Confidence 777775321 111111100 00011111110 0000 0000000 0000001111222333332 2222 2
Q ss_pred CCCCCCcccEEEEecchhhhhhcCCCCCcceEEecCCCCccccccCCCCCcccccccCCCccccccCCCCCCCCCCcCeE
Q 044062 314 FPEHLPALQMLVIQECKELLVSITSLPALCKLEIDGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEEL 393 (567)
Q Consensus 314 ~~~~l~~L~~L~i~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 393 (567)
+|. -......-.-....+++.|+..+....++.++.+ ++.+
T Consensus 377 VPd---------------EVfea~~~~~Vt~VnfskNqL~elPk~L~~lkel------------------------vT~l 417 (565)
T KOG0472|consen 377 VPD---------------EVFEAAKSEIVTSVNFSKNQLCELPKRLVELKEL------------------------VTDL 417 (565)
T ss_pred CCH---------------HHHHHhhhcceEEEecccchHhhhhhhhHHHHHH------------------------HHHH
Confidence 221 0001111223556677776644332222211111 1111
Q ss_pred EEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCC
Q 044062 394 EIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLN 473 (567)
Q Consensus 394 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 473 (567)
.+++ ..+..+ ..+...+++|..|++++ +.+.+++.+.+ .+ -.|+.|+++.+ ....+|..+....
T Consensus 418 ~lsn-n~isfv----~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~-----~l----v~Lq~LnlS~N-rFr~lP~~~y~lq 481 (565)
T KOG0472|consen 418 VLSN-NKISFV----PLELSQLQKLTFLDLSN-NLLNDLPEEMG-----SL----VRLQTLNLSFN-RFRMLPECLYELQ 481 (565)
T ss_pred Hhhc-Cccccc----hHHHHhhhcceeeeccc-chhhhcchhhh-----hh----hhhheeccccc-ccccchHHHhhHH
Confidence 1121 112211 12225667777778876 67777776654 33 56888888875 3666666666666
Q ss_pred CccEEEEccCCCCcccCCcCC--CCCccEEEEccCccccccccccccCCCCCccEEEccccc
Q 044062 474 SLRDIEIYKCSSLVSFPEVAL--PSKLRKIRISSCDALKSLPEAWMCDTNSSLEILSIKHCC 533 (567)
Q Consensus 474 ~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~l~~~~L~~L~l~~c~ 533 (567)
.++.+-.++ +.++.++..+. +.+|.+|++ +.+.++.+|+.+..+ .+|++|+++|.|
T Consensus 482 ~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL-~nNdlq~IPp~Lgnm--tnL~hLeL~gNp 539 (565)
T KOG0472|consen 482 TLETLLASN-NQIGSVDPSGLKNMRNLTTLDL-QNNDLQQIPPILGNM--TNLRHLELDGNP 539 (565)
T ss_pred HHHHHHhcc-ccccccChHHhhhhhhcceecc-CCCchhhCChhhccc--cceeEEEecCCc
Confidence 667666665 56777765533 678888888 556788888888877 688888888865
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.9e-23 Score=203.95 Aligned_cols=366 Identities=19% Similarity=0.267 Sum_probs=182.1
Q ss_pred ccceEEEecCCCCC--ccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeec
Q 044062 22 QRLRVFSLRGYRIS--ELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNN 99 (567)
Q Consensus 22 ~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l 99 (567)
+-.|-.|+++|.++ .+|.....+++++-|.|....+..+|+.++.+.+|++|.+++| ++.++..+++.|+.|+.+++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHhh
Confidence 34445555666555 3455555566666666665555566666666666666666665 45555455555566666666
Q ss_pred cCccccc--cccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccch
Q 044062 100 SNTYSLE--EMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAE 177 (567)
Q Consensus 100 ~~~~~~~--~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 177 (567)
..| .++ .+|.+|.+++.|+.|+++.+.. ++
T Consensus 86 R~N-~LKnsGiP~diF~l~dLt~lDLShNqL-----------------------------~E------------------ 117 (1255)
T KOG0444|consen 86 RDN-NLKNSGIPTDIFRLKDLTILDLSHNQL-----------------------------RE------------------ 117 (1255)
T ss_pred hcc-ccccCCCCchhcccccceeeecchhhh-----------------------------hh------------------
Confidence 555 222 5555555555555555433311 00
Q ss_pred hhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeeccc
Q 044062 178 TEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGSE 257 (567)
Q Consensus 178 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 257 (567)
....+..-+++-.|.++++++..+|..+.. ++..|-.|++++|.+....|.+-.+.+|+.|++++|+- .....
T Consensus 118 ----vP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL-~hfQL- 190 (1255)
T KOG0444|consen 118 ----VPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL-NHFQL- 190 (1255)
T ss_pred ----cchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh-hHHHH-
Confidence 111122223455566666666666655443 56677777888877444444566777888888887742 11110
Q ss_pred ccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEEEecchhhhhhcC
Q 044062 258 FYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLVIQECKELLVSIT 337 (567)
Q Consensus 258 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~l~~~~~ 337 (567)
.++-++.+|+.|.+++-. .....+|..+..+.+|..++++. +++. ..|. .+-
T Consensus 191 ----rQLPsmtsL~vLhms~Tq----RTl~N~Ptsld~l~NL~dvDlS~-N~Lp-~vPe------------------cly 242 (1255)
T KOG0444|consen 191 ----RQLPSMTSLSVLHMSNTQ----RTLDNIPTSLDDLHNLRDVDLSE-NNLP-IVPE------------------CLY 242 (1255)
T ss_pred ----hcCccchhhhhhhccccc----chhhcCCCchhhhhhhhhccccc-cCCC-cchH------------------HHh
Confidence 112224444444444422 12222333334555666666654 4444 3332 333
Q ss_pred CCCCcceEEecCCCCccccccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCC
Q 044062 338 SLPALCKLEIDGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICS 417 (567)
Q Consensus 338 ~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 417 (567)
.+++|+.|++++|........ .....+|++|+++.++ ++.. |. .+ ..++.
T Consensus 243 ~l~~LrrLNLS~N~iteL~~~-------------------------~~~W~~lEtLNlSrNQ-Lt~L--P~-av-cKL~k 292 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELNMT-------------------------EGEWENLETLNLSRNQ-LTVL--PD-AV-CKLTK 292 (1255)
T ss_pred hhhhhheeccCcCceeeeecc-------------------------HHHHhhhhhhccccch-hccc--hH-HH-hhhHH
Confidence 445555555655553221000 0011234444444433 3322 11 11 34455
Q ss_pred ccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCCCccEEEEccCCCCcccCCc-CCCC
Q 044062 418 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEV-ALPS 496 (567)
Q Consensus 418 L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~ 496 (567)
|+.|.+.+ ++++.-.+-+ +...| .+|+.+...++ .++-+|+++..|..|+.|.+.. +.+..+|.. .+++
T Consensus 293 L~kLy~n~-NkL~FeGiPS---GIGKL----~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~ 362 (1255)
T KOG0444|consen 293 LTKLYANN-NKLTFEGIPS---GIGKL----IQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLP 362 (1255)
T ss_pred HHHHHhcc-CcccccCCcc---chhhh----hhhHHHHhhcc-ccccCchhhhhhHHHHHhcccc-cceeechhhhhhcC
Confidence 55555544 4443211111 11222 45555555553 3666666666666666666664 455555543 3456
Q ss_pred CccEEEEccCccccc
Q 044062 497 KLRKIRISSCDALKS 511 (567)
Q Consensus 497 ~L~~L~l~~c~~l~~ 511 (567)
-|+.|++..++++--
T Consensus 363 ~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 363 DLKVLDLRENPNLVM 377 (1255)
T ss_pred CcceeeccCCcCccC
Confidence 666666666665543
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.5e-23 Score=203.20 Aligned_cols=300 Identities=23% Similarity=0.262 Sum_probs=194.5
Q ss_pred hhhhhhccccceEEEecCCCCC--ccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccc-ccc
Q 044062 14 ILPKLFKLQRLRVFSLRGYRIS--ELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCAD-MGN 90 (567)
Q Consensus 14 ~~~~~~~l~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~-~~~ 90 (567)
+--.+..++.||.+.+..|++. .+|..+-.+.-|.+|||+.|++.+.|..+...+++-+|+|++| ++++||.. +-+
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfin 148 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFIN 148 (1255)
T ss_pred hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHh
Confidence 3334455555555555555544 4555555566666666666666666666666666666666655 56666554 456
Q ss_pred ccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCC
Q 044062 91 LTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDG 170 (567)
Q Consensus 91 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~ 170 (567)
|+.|-.||+++| +++.+|+.+..+..|++|.+..+.... ..+..+..++ .|+.|.++.+..
T Consensus 149 LtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmt--------------sL~vLhms~TqR--- 209 (1255)
T KOG0444|consen 149 LTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMT--------------SLSVLHMSNTQR--- 209 (1255)
T ss_pred hHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhH-HHHhcCccch--------------hhhhhhcccccc---
Confidence 666666666666 666666666666666666544332111 1222333333 555555554211
Q ss_pred CCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcc
Q 044062 171 SSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSR 250 (567)
Q Consensus 171 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 250 (567)
........+..+.+|..++++.+....+|.++. .+.+|++|++++|.+++.-...+...+|+.|.++.| .
T Consensus 210 -------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly--~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-Q 279 (1255)
T KOG0444|consen 210 -------TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY--KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-Q 279 (1255)
T ss_pred -------hhhcCCCchhhhhhhhhccccccCCCcchHHHh--hhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-h
Confidence 112234455666888888888888888888877 688899999999886655545556678999999887 4
Q ss_pred eeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCC---CCcccEEEEe
Q 044062 251 VKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEH---LPALQMLVIQ 327 (567)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~---l~~L~~L~i~ 327 (567)
+...+..... ++.|++|...++ ...+.++|++++.+.+|+.+...+ ++++ ..|++ ++.|++|++.
T Consensus 280 Lt~LP~avcK------L~kL~kLy~n~N----kL~FeGiPSGIGKL~~Levf~aan-N~LE-lVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 280 LTVLPDAVCK------LTKLTKLYANNN----KLTFEGIPSGIGKLIQLEVFHAAN-NKLE-LVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hccchHHHhh------hHHHHHHHhccC----cccccCCccchhhhhhhHHHHhhc-cccc-cCchhhhhhHHHHHhccc
Confidence 5666655433 788888888765 345567778888888898888877 6777 77754 5788888888
Q ss_pred cchh--hhhhcCCCCCcceEEecCCCCccc
Q 044062 328 ECKE--LLVSITSLPALCKLEIDGCKKVVW 355 (567)
Q Consensus 328 ~~~~--l~~~~~~~~~L~~L~l~~~~~~~~ 355 (567)
.|.. ++..+..++.|+.|+++.|+.+..
T Consensus 348 ~NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 348 HNRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ccceeechhhhhhcCCcceeeccCCcCccC
Confidence 7763 466777788888888888887655
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-16 Score=148.75 Aligned_cols=261 Identities=19% Similarity=0.164 Sum_probs=163.2
Q ss_pred cchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhcc
Q 044062 8 GYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLC 85 (567)
Q Consensus 8 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~ 85 (567)
+...+.+|.+++ .....++|..|+|+.+| .+|+.+++||+|||+.|.|+.+ |.+|.++..|-.|.+.+++.++++|
T Consensus 55 ~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 55 GKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 344566887777 57889999999999997 6899999999999999999988 8889999999999999977999999
Q ss_pred cc-cccccccceeeccCccccccccc-cccccccccccCceEeccCC--CCCcccccccccccc-cee---eccccc---
Q 044062 86 AD-MGNLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTLSNFVVGKDS--GLRLPELKLLMHLRG-TLE---ISKLEN--- 154 (567)
Q Consensus 86 ~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~~~~~~~~~--~~~~~~l~~l~~l~~-~~~---~~~~~~--- 154 (567)
+. |++|..|+.|.+.-| .+.-++. .+..+++|..|.++.+.... ...+..+..++.++. ..+ .-.+.+
T Consensus 133 k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 87 899999999999888 6776554 48889999888766554322 112222222222210 000 000000
Q ss_pred ----------------------ccccceEEEeeecCCCCCCccchhh-----hhhhccCCCCCCCcEEEEeecCCCCCcc
Q 044062 155 ----------------------ENLRELLLRWTCSTDGSSSREAETE-----MGVLDMLKPHKNLEQFGICGYGGTKFPT 207 (567)
Q Consensus 155 ----------------------~~L~~l~l~~~~~~~~~~~~~~~~~-----~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 207 (567)
.+....+-..........+.....+ ......++++++|++|++.++..+.+..
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 0000000000000000000000000 0111235667888888888888777644
Q ss_pred -cccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccc
Q 044062 208 -WLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQ 279 (567)
Q Consensus 208 -~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 279 (567)
|+. ...+++.|.+..|.+...-. .+.++..|+.|++.+|....-.+..|.. ...|.+|++-.++
T Consensus 292 ~aFe--~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~------~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 292 GAFE--GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT------LFSLSTLNLLSNP 357 (498)
T ss_pred hhhc--chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc------cceeeeeehccCc
Confidence 443 57778888888777443322 3556778888888887543333333322 5677777775543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=2.5e-14 Score=151.27 Aligned_cols=255 Identities=20% Similarity=0.174 Sum_probs=132.4
Q ss_pred cceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeeccCc
Q 044062 23 RLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNT 102 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~ 102 (567)
.-.+|++++++++.+|+.+. ++|+.|++.+|+++.+|. ..++|++|++++| .++.+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 45566777777666666554 356777777777776664 2466777777766 56666542 246666677666
Q ss_pred cccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhh
Q 044062 103 YSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGV 182 (567)
Q Consensus 103 ~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 182 (567)
.+..+|... ++|+.|++..+.... ++. ... +|+.|++++|.... .+
T Consensus 273 -~L~~Lp~lp---~~L~~L~Ls~N~Lt~---LP~--~p~--------------~L~~LdLS~N~L~~--Lp--------- 318 (788)
T PRK15387 273 -PLTHLPALP---SGLCKLWIFGNQLTS---LPV--LPP--------------GLQELSVSDNQLAS--LP--------- 318 (788)
T ss_pred -chhhhhhch---hhcCEEECcCCcccc---ccc--ccc--------------ccceeECCCCcccc--CC---------
Confidence 555555433 233334332221110 000 011 45555555431111 00
Q ss_pred hccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeecccccCCC
Q 044062 183 LDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDD 262 (567)
Q Consensus 183 l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 262 (567)
. ...+|+.|.+.++....+|.. ..+|+.|++++|.+. .+|.+ .++|+.|++++|. +..++..
T Consensus 319 --~--lp~~L~~L~Ls~N~L~~LP~l-----p~~Lq~LdLS~N~Ls-~LP~l--p~~L~~L~Ls~N~-L~~LP~l----- 380 (788)
T PRK15387 319 --A--LPSELCKLWAYNNQLTSLPTL-----PSGLQELSVSDNQLA-SLPTL--PSELYKLWAYNNR-LTSLPAL----- 380 (788)
T ss_pred --C--CcccccccccccCcccccccc-----ccccceEecCCCccC-CCCCC--Ccccceehhhccc-cccCccc-----
Confidence 0 012455566666655555531 235667777666643 33322 2456666666553 3333210
Q ss_pred CCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEEEecch--hhhhhcCCCC
Q 044062 263 SPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLVIQECK--ELLVSITSLP 340 (567)
Q Consensus 263 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~--~l~~~~~~~~ 340 (567)
..+|+.|+++++. +... + ...++|+.|++++ +.++ .+|..+.+|+.|++++|. .++..+..++
T Consensus 381 ----~~~L~~LdLs~N~-Lt~L-----P---~l~s~L~~LdLS~-N~Ls-sIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~ 445 (788)
T PRK15387 381 ----PSGLKELIVSGNR-LTSL-----P---VLPSELKELMVSG-NRLT-SLPMLPSGLLSLSVYRNQLTRLPESLIHLS 445 (788)
T ss_pred ----ccccceEEecCCc-ccCC-----C---CcccCCCEEEccC-CcCC-CCCcchhhhhhhhhccCcccccChHHhhcc
Confidence 3456666666542 2211 1 1234677777777 3555 455555566666666654 2334445566
Q ss_pred CcceEEecCCCCc
Q 044062 341 ALCKLEIDGCKKV 353 (567)
Q Consensus 341 ~L~~L~l~~~~~~ 353 (567)
+|+.|++++|+..
T Consensus 446 ~L~~LdLs~N~Ls 458 (788)
T PRK15387 446 SETTVNLEGNPLS 458 (788)
T ss_pred CCCeEECCCCCCC
Confidence 7777777777654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=6.3e-14 Score=148.23 Aligned_cols=70 Identities=30% Similarity=0.339 Sum_probs=56.0
Q ss_pred cccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeeccCccccccccccccccccccccCce
Q 044062 45 RYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNF 124 (567)
Q Consensus 45 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~ 124 (567)
..-.+|+++++.++.+|..+. .+|+.|++.+| .++.+|.. +++|++|++++| .+..+|... ++|+.|++.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~lp---~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGN-QLTSLPVLP---PGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCC-ccCcccCcc---cccceeecc
Confidence 557789999999999998775 48999999998 78888853 579999999999 888888543 455555543
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=4.3e-16 Score=128.64 Aligned_cols=160 Identities=21% Similarity=0.299 Sum_probs=115.7
Q ss_pred hhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccce
Q 044062 17 KLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHH 96 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 96 (567)
.+..+.+++.|.+++|.++.+|+.+.++.+|++|++++|++.++|..++.+++||+|++.-| .+..+|.+||.++.|+.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 35566778888899999888888888899999999999999999988999999999998887 67788888999999999
Q ss_pred eeccCccccc--cccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCc
Q 044062 97 LNNSNTYSLE--EMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSR 174 (567)
Q Consensus 97 L~l~~~~~~~--~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 174 (567)
||+++| ++. .+|..|..++.|+-|.+..++ .+..
T Consensus 107 ldltyn-nl~e~~lpgnff~m~tlralyl~dnd--fe~l----------------------------------------- 142 (264)
T KOG0617|consen 107 LDLTYN-NLNENSLPGNFFYMTTLRALYLGDND--FEIL----------------------------------------- 142 (264)
T ss_pred hhcccc-ccccccCCcchhHHHHHHHHHhcCCC--cccC-----------------------------------------
Confidence 999888 343 567777777777777532221 1111
Q ss_pred cchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccC
Q 044062 175 EAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVL 231 (567)
Q Consensus 175 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 231 (567)
....+.+++|+.|.+.++..-.+|..++ .+..|+.|.+.+|...-..
T Consensus 143 --------p~dvg~lt~lqil~lrdndll~lpkeig--~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 143 --------PPDVGKLTNLQILSLRDNDLLSLPKEIG--DLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred --------ChhhhhhcceeEEeeccCchhhCcHHHH--HHHHHHHHhcccceeeecC
Confidence 1223344566666666666666666666 4667777777776644333
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=7.7e-16 Score=127.18 Aligned_cols=141 Identities=28% Similarity=0.304 Sum_probs=120.0
Q ss_pred cchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccc-hhhccc
Q 044062 8 GYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDR-LEKLCA 86 (567)
Q Consensus 8 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~-~~~l~~ 86 (567)
.|+++.+|+.++.+.+|++|++++|++.++|.+++.+++||.|++.-|.+..+|.+|+.++-|++|||.+|+. -..+|.
T Consensus 42 HNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpg 121 (264)
T KOG0617|consen 42 HNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPG 121 (264)
T ss_pred cCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCc
Confidence 3444469999999999999999999999999999999999999999999999999999999999999998732 235788
Q ss_pred ccccccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEee
Q 044062 87 DMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWT 165 (567)
Q Consensus 87 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~ 165 (567)
.|-.++.|+-|.++.| .++.+|.+++++++|+.|.+..+.. ...+.+++.++ +|++|.+.+|
T Consensus 122 nff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt--------------~lrelhiqgn 183 (264)
T KOG0617|consen 122 NFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLT--------------RLRELHIQGN 183 (264)
T ss_pred chhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCch--hhCcHHHHHHH--------------HHHHHhcccc
Confidence 8999999999999999 8999999999999999997544432 33456777777 7777777663
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.44 E-value=9.4e-14 Score=150.14 Aligned_cols=259 Identities=24% Similarity=0.280 Sum_probs=123.2
Q ss_pred cccceEEEecCCCCCccccccccccccceeeccCCC--cccccHH-HHccccCceeeccCccchhhccccccccccccee
Q 044062 21 LQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTE--IKTLPES-VNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHL 97 (567)
Q Consensus 21 l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~--l~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 97 (567)
+...|.+.+.++.+..++.+ ..+++|+.|-+.+|. +..++.. |..++.||+|||++|..+.++|..++.|.+||+|
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hhheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 34555555555555544322 223355555555553 3444332 4556666666666655556666666666666666
Q ss_pred eccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccch
Q 044062 98 NNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAE 177 (567)
Q Consensus 98 ~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 177 (567)
+++++ .+..+|.++.+++.|.+|++..+...... ......+. +|+.|.+-.. . ..
T Consensus 601 ~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~--------------~Lr~L~l~~s--~-------~~ 655 (889)
T KOG4658|consen 601 DLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQ--------------SLRVLRLPRS--A-------LS 655 (889)
T ss_pred cccCC-CccccchHHHHHHhhheeccccccccccc-cchhhhcc--------------cccEEEeecc--c-------cc
Confidence 66665 55566666666666666654443321111 11112233 4445544331 0 00
Q ss_pred hhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCcc----ceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceee
Q 044062 178 TEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNL----VTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKR 253 (567)
Q Consensus 178 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 253 (567)
.....+..+..+..|+.+.+.......+.... .+..| +.+.+.++........+..+++|+.|.+.+|...+.
T Consensus 656 ~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~---~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 656 NDKLLLKELENLEHLENLSITISSVLLLEDLL---GMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred cchhhHHhhhcccchhhheeecchhHhHhhhh---hhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 11112222333444555544332220001110 12222 233333333334444567788888899888876443
Q ss_pred ecccccCCCCCC-CCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCC
Q 044062 254 LGSEFYGDDSPI-PFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFP 315 (567)
Q Consensus 254 ~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 315 (567)
......... .. .|+++..+.+.++....+.... ...|+|+.|.+..|..+.+.+|
T Consensus 733 ~~~~~~~~~-~~~~f~~l~~~~~~~~~~~r~l~~~------~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 733 VIEWEESLI-VLLCFPNLSKVSILNCHMLRDLTWL------LFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hcccccccc-hhhhHHHHHHHHhhccccccccchh------hccCcccEEEEecccccccCCC
Confidence 221111100 11 1455666666666554443333 3457777777777777775444
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=2.7e-13 Score=144.41 Aligned_cols=92 Identities=22% Similarity=0.369 Sum_probs=61.7
Q ss_pred ccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeeccC
Q 044062 22 QRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSN 101 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~ 101 (567)
.+...|++++++++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++| .++.+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 356777787777777776554 467788888887777776554 47888888877 5667766543 3677788887
Q ss_pred ccccccccccccccccccccCc
Q 044062 102 TYSLEEMPVGIGKLTCLQTLSN 123 (567)
Q Consensus 102 ~~~~~~lp~~~~~l~~L~~L~~ 123 (567)
| .+..+|..+. ++|+.|++
T Consensus 251 N-~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 251 N-RITELPERLP--SALQSLDL 269 (754)
T ss_pred C-ccCcCChhHh--CCCCEEEC
Confidence 7 6667765543 24555543
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.43 E-value=1.1e-15 Score=143.68 Aligned_cols=281 Identities=19% Similarity=0.214 Sum_probs=155.9
Q ss_pred CCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccC----C
Q 044062 239 SLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGT----F 314 (567)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----~ 314 (567)
.|++|.+.||..+.+-+...+. ..+|+++.|.+.+|..+++.....+. ..|++|++|++..|..+++. +
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~----~~CpnIehL~l~gc~~iTd~s~~sla---~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFA----SNCPNIEHLALYGCKKITDSSLLSLA---RYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCcchhhHHh----hhCCchhhhhhhcceeccHHHHHHHH---HhcchhhhhhhcccchhHHHHHHHH
Confidence 3445555555444333322221 12555555555555544444433333 44555555555555555532 2
Q ss_pred CCCCCcccEEEEecchhhhh-----hcCCCCCcceEEecCCCCccc------cccCCCCCcccccccCCCccccccCCCC
Q 044062 315 PEHLPALQMLVIQECKELLV-----SITSLPALCKLEIDGCKKVVW------RSATDHLGSQNSVVCRDTSNQVFLAGPL 383 (567)
Q Consensus 315 ~~~l~~L~~L~i~~~~~l~~-----~~~~~~~L~~L~l~~~~~~~~------~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 383 (567)
..++++|+++++++|+.+.. ....+..++.+...+|..... ....+-+..+++.+|..+++.... ..
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~--~i 289 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW--LI 289 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH--HH
Confidence 23455555555555554321 122344455555555554433 233444555555566555443200 11
Q ss_pred CCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCc
Q 044062 384 KPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLV 463 (567)
Q Consensus 384 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~ 463 (567)
-..+..|+.++.++|..+++. ....+.++.++|+.+-+++|..+++...... ....+.|+.+++.+|..++
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~--~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-------~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDE--VLWALGQHCHNLQVLELSGCQQFSDRGFTML-------GRNCPHLERLDLEECGLIT 360 (483)
T ss_pred hhhhhHhhhhcccCCCCCchH--HHHHHhcCCCceEEEeccccchhhhhhhhhh-------hcCChhhhhhcccccceeh
Confidence 334567788888888877666 5555556778888888888877555433222 2223778888888887655
Q ss_pred c--cccCCCCCCCccEEEEccCCCCccc-----CCc-CCCCCccEEEEccCccccccc-cccccCCCCCccEEEcccccc
Q 044062 464 K--LPQSSLGLNSLRDIEIYKCSSLVSF-----PEV-ALPSKLRKIRISSCDALKSLP-EAWMCDTNSSLEILSIKHCCS 534 (567)
Q Consensus 464 ~--~~~~~~~~~~L~~L~l~~c~~l~~~-----~~~-~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~~~L~~L~l~~c~~ 534 (567)
. +.....+++.|+.+.++.|..+++- ... .....|+.+.+.+|+.+++-. +.+.. |++|+.+++++|..
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~--c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI--CRNLERIELIDCQD 438 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh--Ccccceeeeechhh
Confidence 2 3334457888888888888766553 111 125678888888888776421 12222 37888888888887
Q ss_pred ccccc
Q 044062 535 LTYIA 539 (567)
Q Consensus 535 l~~~~ 539 (567)
++.-+
T Consensus 439 vtk~~ 443 (483)
T KOG4341|consen 439 VTKEA 443 (483)
T ss_pred hhhhh
Confidence 76544
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=1.5e-14 Score=135.02 Aligned_cols=89 Identities=21% Similarity=0.322 Sum_probs=70.7
Q ss_pred CCCCccccccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhc-ccccccccccceeeccCcccccccc
Q 044062 32 YRISELPDSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKL-CADMGNLTKLHHLNNSNTYSLEEMP 109 (567)
Q Consensus 32 ~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp 109 (567)
-+++++|..++ ..-..++|..|.|+.+|+ +|+.+++||.|||++| .+..| |+.|..+..|-.|-+-++++++.+|
T Consensus 56 ~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 56 KGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 34666666654 245678899999999965 4999999999999998 78877 4458999988777777755999999
Q ss_pred cc-ccccccccccCc
Q 044062 110 VG-IGKLTCLQTLSN 123 (567)
Q Consensus 110 ~~-~~~l~~L~~L~~ 123 (567)
.+ |++|.+|+.|.+
T Consensus 133 k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLL 147 (498)
T ss_pred hhHhhhHHHHHHHhc
Confidence 77 899999988864
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.35 E-value=2e-14 Score=135.34 Aligned_cols=277 Identities=15% Similarity=0.226 Sum_probs=202.0
Q ss_pred CCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccC----CCCCCCcccEEEEecchhhh-----hhcCC
Q 044062 268 PCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGT----FPEHLPALQMLVIQECKELL-----VSITS 338 (567)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----~~~~l~~L~~L~i~~~~~l~-----~~~~~ 338 (567)
..|++|.++++....+....... ..+|++++|.+.+|.++++. +...+++|+.|++..|..+. .....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~---~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFA---SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHHh---hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 46789999998776555444333 67999999999999988853 23568999999999987553 23446
Q ss_pred CCCcceEEecCCCCccc------cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccc
Q 044062 339 LPALCKLEIDGCKKVVW------RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLL 412 (567)
Q Consensus 339 ~~~L~~L~l~~~~~~~~------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 412 (567)
+++|++++++.|+.+.. ..+...++.+...+|...+.-... ..-..++.+.++++.+|..+++. ..-...
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~--~~~~~~~~i~~lnl~~c~~lTD~--~~~~i~ 290 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALL--KAAAYCLEILKLNLQHCNQLTDE--DLWLIA 290 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHH--HHhccChHhhccchhhhccccch--HHHHHh
Confidence 99999999999998766 345556777777787766533211 12345566778888899888876 444444
Q ss_pred cCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCccccc-C-CCCCCCccEEEEccCCCCcccC
Q 044062 413 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQ-S-SLGLNSLRDIEIYKCSSLVSFP 490 (567)
Q Consensus 413 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~-~~~~~~L~~L~l~~c~~l~~~~ 490 (567)
..+..|+.++.++|..+++.....+.... ++|+.+.++.|..++..-. . -.+++.|+.+++.+|..+.+-.
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~-------~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHC-------HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCC-------CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh
Confidence 56789999999999998887776664433 8999999999998775421 1 2378899999999996554421
Q ss_pred --C-cCCCCCccEEEEccCcccccc-----ccccccCCCCCccEEEcccccccccccccCcc--cccCeEEEeeCCCCCc
Q 044062 491 --E-VALPSKLRKIRISSCDALKSL-----PEAWMCDTNSSLEILSIKHCCSLTYIAEAQLP--LSLKQLVIHNCDNMRT 560 (567)
Q Consensus 491 --~-~~~~~~L~~L~l~~c~~l~~l-----~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~l~~~~c~~l~~ 560 (567)
. ..-.+.|+.|.++.|..+++. ...-.++ ..|..+++.+||.++.-.-..+. ++||.+++.+|..+.+
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~--~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL--EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc--cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 1 123688999999999988865 2233334 67999999999988864433333 8999999998877654
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=2.7e-12 Score=136.79 Aligned_cols=61 Identities=20% Similarity=0.358 Sum_probs=41.1
Q ss_pred cccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeeccCcccccccccc
Q 044062 45 RYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVG 111 (567)
Q Consensus 45 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~ 111 (567)
.+...|+++++.++.+|..+. ++|+.|+|++| .++.+|..+. .+|+.|++++| .+..+|..
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~ 238 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPAT 238 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChh
Confidence 346677777777777776543 46777777777 6667776544 47777777777 56666653
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=7.2e-12 Score=135.70 Aligned_cols=121 Identities=32% Similarity=0.388 Sum_probs=96.9
Q ss_pred ccccceEEEecCCC--CCccccc-cccccccceeeccCC-CcccccHHHHccccCceeeccCccchhhcccccccccccc
Q 044062 20 KLQRLRVFSLRGYR--ISELPDS-VGDLRYLRHLNLSGT-EIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLH 95 (567)
Q Consensus 20 ~l~~L~~L~L~~~~--~~~l~~~-~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 95 (567)
.+++|++|-+.+|. +..++.. |..++.||+|||++| .+.++|+.++.+.+||||+++++ .+..+|..+++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 34479999999986 5666544 688999999999977 56799999999999999999998 7889999999999999
Q ss_pred eeeccCccccccccccccccccccccCceEec-cCCCCCcccccccc
Q 044062 96 HLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVG-KDSGLRLPELKLLM 141 (567)
Q Consensus 96 ~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~-~~~~~~~~~l~~l~ 141 (567)
+|++..+.....+|.....|++|+.|.+.... ..+...+.++.++.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 99999986666776667779999999876654 23334444555555
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=1.8e-12 Score=127.86 Aligned_cols=102 Identities=25% Similarity=0.253 Sum_probs=66.0
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCC-----ccccccccccccceeeccCCCccc-------ccHHHHccc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRIS-----ELPDSVGDLRYLRHLNLSGTEIKT-------LPESVNKLY 68 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-----~l~~~~~~l~~L~~L~L~~~~l~~-------lp~~~~~l~ 68 (567)
|+++.+++. ..+..++.+.+|+.++++++.++ .+++.+...++++.|+++++.+.. ++..+..++
T Consensus 5 L~~~~l~~~---~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 5 LKGELLKTE---RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccCccccc---chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 355666642 33445667777888888888874 244556677778888888776552 245566777
Q ss_pred cCceeeccCccchhhcccccccccc---cceeeccCccccc
Q 044062 69 NLHTLLLEDCDRLEKLCADMGNLTK---LHHLNNSNTYSLE 106 (567)
Q Consensus 69 ~L~~L~L~~~~~~~~l~~~~~~l~~---L~~L~l~~~~~~~ 106 (567)
+|++|++++|......+..+..+.+ |++|++++| .+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~ 121 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GLG 121 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC-ccc
Confidence 8888888887433333444544444 888888887 443
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=1e-11 Score=122.48 Aligned_cols=123 Identities=20% Similarity=0.146 Sum_probs=86.6
Q ss_pred CccccccchhhhhhhhhhccccceEEEecCCCCCc-------cccccccccccceeeccCCCcc-cccHHHHcccc---C
Q 044062 2 LSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISE-------LPDSVGDLRYLRHLNLSGTEIK-TLPESVNKLYN---L 70 (567)
Q Consensus 2 ~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-------l~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~---L 70 (567)
+++.++......++..+...++++.++++++.+.. ++..+..+++|+.|++++|.+. ..+..+..+.. |
T Consensus 31 ~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 110 (319)
T cd00116 31 EGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL 110 (319)
T ss_pred cCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcc
Confidence 45555554445677778888899999999987662 2345677889999999999887 45666766666 9
Q ss_pred ceeeccCccchh-----hcccccccc-cccceeeccCccccc-----cccccccccccccccCceEe
Q 044062 71 HTLLLEDCDRLE-----KLCADMGNL-TKLHHLNNSNTYSLE-----EMPVGIGKLTCLQTLSNFVV 126 (567)
Q Consensus 71 ~~L~L~~~~~~~-----~l~~~~~~l-~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~~~~~ 126 (567)
++|++++|+ +. .+...+..+ ++|+.|++++| .+. .++..+.++++|+.|++..+
T Consensus 111 ~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 111 QELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred cEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 999999983 33 233445667 89999999999 454 23334555566666655433
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=4.4e-10 Score=97.62 Aligned_cols=102 Identities=31% Similarity=0.428 Sum_probs=24.0
Q ss_pred ccceEEEecCCCCCccccccc-cccccceeeccCCCcccccHHHHccccCceeeccCccchhhccccc-ccccccceeec
Q 044062 22 QRLRVFSLRGYRISELPDSVG-DLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADM-GNLTKLHHLNN 99 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~~~~~-~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~-~~l~~L~~L~l 99 (567)
.+++.|+|.+|+|+.+ +.+. .+.+|++||+++|.++++ +.+..+++|+.|++++| .++++.+.+ ..+++|++|++
T Consensus 19 ~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccc-cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCC-CCCccccchHHhCCcCCEEEC
Confidence 3455555555555544 3333 345555555555555555 23555555555555555 454443333 24555555555
Q ss_pred cCccccccccc--cccccccccccCceEec
Q 044062 100 SNTYSLEEMPV--GIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 100 ~~~~~~~~lp~--~~~~l~~L~~L~~~~~~ 127 (567)
++| .+..+.. .+..+++|+.|++.++.
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 555 4443321 13444445555444443
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=3.1e-10 Score=98.62 Aligned_cols=117 Identities=29% Similarity=0.394 Sum_probs=54.9
Q ss_pred cccchhhhhhhhhh-ccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHH-HccccCceeeccCccchhh
Q 044062 6 LHGYLALSILPKLF-KLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESV-NKLYNLHTLLLEDCDRLEK 83 (567)
Q Consensus 6 l~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~~L~L~~~~~~~~ 83 (567)
++||.+..+ ..+. .+.+|++|++++|+++.+ +.+..+++|+.|++++|.++++++.+ ..+++|++|++++| .+.+
T Consensus 26 L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~ 102 (175)
T PF14580_consen 26 LRGNQISTI-ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISD 102 (175)
T ss_dssp -----------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----S
T ss_pred ccccccccc-cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCC
Confidence 344444444 3555 688999999999999988 56888999999999999999997666 47999999999998 6665
Q ss_pred cc--cccccccccceeeccCccccccccc----cccccccccccCceEe
Q 044062 84 LC--ADMGNLTKLHHLNNSNTYSLEEMPV----GIGKLTCLQTLSNFVV 126 (567)
Q Consensus 84 l~--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~~~~~ 126 (567)
+. ..++.+++|+.|++.+| .+...+. -+..+++|+.|+-..+
T Consensus 103 l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 103 LNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp CCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEc
Confidence 53 34678999999999999 5554442 2778899999975443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.84 E-value=3.2e-09 Score=107.90 Aligned_cols=108 Identities=30% Similarity=0.475 Sum_probs=78.2
Q ss_pred hhhhhccccceEEEecCCCCCcccccccccc-ccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccc
Q 044062 15 LPKLFKLQRLRVFSLRGYRISELPDSVGDLR-YLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTK 93 (567)
Q Consensus 15 ~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~-~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~ 93 (567)
+..+..++.++.|++.++.++.+++.....+ +|+.|++++|.+.++|..+..+++|+.|++++| .+.++|...+.++.
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhh
Confidence 3344555677888888888877766666664 788888888888877777788888888888877 77777776667778
Q ss_pred cceeeccCccccccccccccccccccccCce
Q 044062 94 LHHLNNSNTYSLEEMPVGIGKLTCLQTLSNF 124 (567)
Q Consensus 94 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~ 124 (567)
|+.|++++| .+..+|..+.....|+.+.+.
T Consensus 188 L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 188 LNNLDLSGN-KISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hhheeccCC-ccccCchhhhhhhhhhhhhhc
Confidence 888888887 777777766555556666543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=2.2e-10 Score=112.55 Aligned_cols=172 Identities=25% Similarity=0.250 Sum_probs=87.1
Q ss_pred cceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeeccCc
Q 044062 23 RLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNT 102 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~ 102 (567)
.....|++.|++..+|..++.|-.|+.+.|..|.+..+|+.+..+..|.+|+|+.| ++..+|..+..|+ |+.|.+++|
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC
Confidence 34445555555555555555555555555555555555555555555555555555 4555555544443 455555555
Q ss_pred cccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhh
Q 044062 103 YSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGV 182 (567)
Q Consensus 103 ~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 182 (567)
++..+|.+++.+..|.+|+...+.. ...+..++.+. .|+.+.++.|... ..
T Consensus 154 -kl~~lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~--------------slr~l~vrRn~l~------------~l 204 (722)
T KOG0532|consen 154 -KLTSLPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLT--------------SLRDLNVRRNHLE------------DL 204 (722)
T ss_pred -ccccCCcccccchhHHHhhhhhhhh--hhchHHhhhHH--------------HHHHHHHhhhhhh------------hC
Confidence 5555555555555555555433321 12223344444 3444443332110 01
Q ss_pred hccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCc
Q 044062 183 LDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMC 228 (567)
Q Consensus 183 l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 228 (567)
.+.+.. -.|.+|+++.|....+|-.+. .|..|+.|.+.+|.+.
T Consensus 205 p~El~~-LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 205 PEELCS-LPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPLQ 247 (722)
T ss_pred CHHHhC-CceeeeecccCceeecchhhh--hhhhheeeeeccCCCC
Confidence 112221 245666666666666666655 5667777777776643
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=2.7e-09 Score=96.80 Aligned_cols=103 Identities=32% Similarity=0.403 Sum_probs=53.4
Q ss_pred hccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCcc-------------------
Q 044062 19 FKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCD------------------- 79 (567)
Q Consensus 19 ~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~------------------- 79 (567)
.-++.|..+||++|.|+.+.++..-.+.+|+|+++.|.+..+. .+..+++|..|||++|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 3444555555555555555555555555555555555555442 25555555555555541
Q ss_pred ---chhhcccccccccccceeeccCcccccccc--ccccccccccccCce
Q 044062 80 ---RLEKLCADMGNLTKLHHLNNSNTYSLEEMP--VGIGKLTCLQTLSNF 124 (567)
Q Consensus 80 ---~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~~~ 124 (567)
.++++ ++++++.+|..||+++| .++.+- ..|++++.|+++.+.
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhc
Confidence 33333 34555566666666665 455443 235555555555443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=9.6e-10 Score=108.11 Aligned_cols=189 Identities=22% Similarity=0.249 Sum_probs=133.4
Q ss_pred EEEecCCCCCccc-ccc-ccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeeccCcc
Q 044062 26 VFSLRGYRISELP-DSV-GDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNTY 103 (567)
Q Consensus 26 ~L~L~~~~~~~l~-~~~-~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 103 (567)
+|.|++-.++.+| .+. ..+.--...||+.|++..+|..+..+..|+.+.|++| .+..+|..++.+..|..+|++.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N- 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN- 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-
Confidence 4556666677665 233 4455566789999999999999999999999999998 78899999999999999999999
Q ss_pred ccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhhh
Q 044062 104 SLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVL 183 (567)
Q Consensus 104 ~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l 183 (567)
.+..+|..++.|+ |+.|-+..+. -...+.+++.+. .|.+++.+.|... ...
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNk--l~~lp~~ig~~~--------------tl~~ld~s~nei~------------slp 182 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNK--LTSLPEEIGLLP--------------TLAHLDVSKNEIQ------------SLP 182 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCc--cccCCcccccch--------------hHHHhhhhhhhhh------------hch
Confidence 8999999888775 3444322221 112233344333 5666666654111 234
Q ss_pred ccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCc
Q 044062 184 DMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMS 249 (567)
Q Consensus 184 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 249 (567)
..+..+.+|+.|.+..+....+|.... .-.|.+||++.|++ ..+| .+-.|..|++|.+.+|.
T Consensus 183 sql~~l~slr~l~vrRn~l~~lp~El~---~LpLi~lDfScNki-s~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNHLEDLPEELC---SLPLIRLDFSCNKI-SYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHhhhHHHHHHHHHhhhhhhhCCHHHh---CCceeeeecccCce-eecchhhhhhhhheeeeeccCC
Confidence 456667788888888888888877664 23478888887774 4444 56678888888888775
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=2.4e-08 Score=101.51 Aligned_cols=111 Identities=28% Similarity=0.407 Sum_probs=94.3
Q ss_pred hhhhhhhhhhccc-cceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhccccc
Q 044062 10 LALSILPKLFKLQ-RLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADM 88 (567)
Q Consensus 10 ~~~~~~~~~~~l~-~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~ 88 (567)
.+..+++.....+ +|+.|++++|++..+|..+..+++|+.|++++|++.++|...+.++.|+.|++++| .+..+|..+
T Consensus 127 ~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~ 205 (394)
T COG4886 127 NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEI 205 (394)
T ss_pred ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhh
Confidence 3335777777775 99999999999999988899999999999999999999988889999999999999 899999888
Q ss_pred ccccccceeeccCccccccccccccccccccccC
Q 044062 89 GNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLS 122 (567)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 122 (567)
+.+..|+++.+++| .....+..+.+++++..+.
T Consensus 206 ~~~~~L~~l~~~~N-~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 206 ELLSALEELDLSNN-SIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhhhhhhhcCC-cceecchhhhhcccccccc
Confidence 88889999999999 4455555566666665554
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=5.1e-09 Score=95.02 Aligned_cols=84 Identities=29% Similarity=0.288 Sum_probs=66.4
Q ss_pred cccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeeccCccccccccccccccccc
Q 044062 39 DSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCL 118 (567)
Q Consensus 39 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 118 (567)
..+..++-|+.+||++|.|+.+-+++.-.+.+|.|++++| .+..+ ..+..+++|+.||+++| .+..+...=.++.++
T Consensus 278 ~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v-~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTV-QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNI 354 (490)
T ss_pred EecchHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeee-hhhhhcccceEeecccc-hhHhhhhhHhhhcCE
Confidence 5567888999999999999999899999999999999999 66666 45889999999999999 666554333344555
Q ss_pred cccCceE
Q 044062 119 QTLSNFV 125 (567)
Q Consensus 119 ~~L~~~~ 125 (567)
+.|.+..
T Consensus 355 KtL~La~ 361 (490)
T KOG1259|consen 355 KTLKLAQ 361 (490)
T ss_pred eeeehhh
Confidence 5554433
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=8.1e-08 Score=102.35 Aligned_cols=92 Identities=25% Similarity=0.385 Sum_probs=63.6
Q ss_pred cceEEEecCCCCC-ccccccccccccceeeccCCCcc-cccHHHHccccCceeeccCccchhhcccccccccccceeecc
Q 044062 23 RLRVFSLRGYRIS-ELPDSVGDLRYLRHLNLSGTEIK-TLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNS 100 (567)
Q Consensus 23 ~L~~L~L~~~~~~-~l~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~ 100 (567)
.++.|+|++|.++ .+|+.+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|...+.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3666777777766 45667777777777777777776 567777777777777777774444667777777777777777
Q ss_pred Cccccccccccccc
Q 044062 101 NTYSLEEMPVGIGK 114 (567)
Q Consensus 101 ~~~~~~~lp~~~~~ 114 (567)
+|.....+|..+.+
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 77444466665544
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=5.9e-08 Score=69.12 Aligned_cols=57 Identities=30% Similarity=0.538 Sum_probs=40.5
Q ss_pred ccceEEEecCCCCCccc-cccccccccceeeccCCCccccc-HHHHccccCceeeccCc
Q 044062 22 QRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~ 78 (567)
++|++|++++|+++.+| .+|..+++|++|++++|.++.++ ..|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35777777777777775 45677777777777777777664 45677777777777776
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.2e-08 Score=95.77 Aligned_cols=108 Identities=22% Similarity=0.237 Sum_probs=57.7
Q ss_pred hhhccccceEEEecCCCCCccc--cccccccccceeeccCCCcc---cccHHHHccccCceeeccCccchhhcccc--cc
Q 044062 17 KLFKLQRLRVFSLRGYRISELP--DSVGDLRYLRHLNLSGTEIK---TLPESVNKLYNLHTLLLEDCDRLEKLCAD--MG 89 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~l~--~~~~~l~~L~~L~L~~~~l~---~lp~~~~~l~~L~~L~L~~~~~~~~l~~~--~~ 89 (567)
.=.++++|+...|.++.+...+ ...+.|++++.|||+.|-+. .+.+....+++|+.|+|+.|+ +..-.++ -.
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~ 194 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTL 194 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchh
Confidence 3345566777777766655443 24566777777777766544 233445667777777777662 2211111 12
Q ss_pred cccccceeeccCccccc--cccccccccccccccCceEe
Q 044062 90 NLTKLHHLNNSNTYSLE--EMPVGIGKLTCLQTLSNFVV 126 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~~~~~ 126 (567)
.+.+|+.|.++.| .+. ++.......++|+.|.+..+
T Consensus 195 ~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 195 LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 4566666667666 332 11112334555555554433
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.48 E-value=4.7e-07 Score=88.55 Aligned_cols=136 Identities=26% Similarity=0.404 Sum_probs=89.1
Q ss_pred CCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCccc
Q 044062 386 RIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKL 465 (567)
Q Consensus 386 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~ 465 (567)
.+.+++.|++++| .++.+ + .+ -++|++|.+++|+.++.++.. +|++|+.|++++|..+..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sL--P--~L---P~sLtsL~Lsnc~nLtsLP~~-----------LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL--P--VL---PNELTEITIENCNNLTTLPGS-----------IPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HhcCCCEEEeCCC-CCccc--C--CC---CCCCcEEEccCCCCcccCCch-----------hhhhhhheEccCccccccc
Confidence 3578999999999 47766 4 22 247999999999998777642 2489999999999878777
Q ss_pred ccCCCCCCCccEEEEccCCCCcccCCcCCCCCccEEEEccCcccc--ccccccccCCCCCccEEEcccccccccccccCc
Q 044062 466 PQSSLGLNSLRDIEIYKCSSLVSFPEVALPSKLRKIRISSCDALK--SLPEAWMCDTNSSLEILSIKHCCSLTYIAEAQL 543 (567)
Q Consensus 466 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~ 543 (567)
|. .|+.|++.. +....+. .+|++|+.|.+.+++... .++ ..+| ++|++|.+.+|..+. ++ .++
T Consensus 111 P~------sLe~L~L~~-n~~~~L~--~LPssLk~L~I~~~n~~~~~~lp---~~LP-sSLk~L~Is~c~~i~-LP-~~L 175 (426)
T PRK15386 111 PE------SVRSLEIKG-SATDSIK--NVPNGLTSLSINSYNPENQARID---NLIS-PSLKTLSLTGCSNII-LP-EKL 175 (426)
T ss_pred cc------ccceEEeCC-CCCcccc--cCcchHhheeccccccccccccc---cccC-CcccEEEecCCCccc-Cc-ccc
Confidence 64 467777763 3433332 245667777774433111 111 1133 578888888776553 33 356
Q ss_pred ccccCeEEEeeC
Q 044062 544 PLSLKQLVIHNC 555 (567)
Q Consensus 544 ~~~L~~l~~~~c 555 (567)
+.+|++|.++.+
T Consensus 176 P~SLk~L~ls~n 187 (426)
T PRK15386 176 PESLQSITLHIE 187 (426)
T ss_pred cccCcEEEeccc
Confidence 677888877654
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=9.5e-08 Score=68.03 Aligned_cols=57 Identities=35% Similarity=0.475 Sum_probs=50.2
Q ss_pred cccceeeccCCCcccccH-HHHccccCceeeccCccchhhcccc-cccccccceeeccCc
Q 044062 45 RYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKLHHLNNSNT 102 (567)
Q Consensus 45 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~l~~~ 102 (567)
++|++|++++|.++.+|. .|..+++|++|++++| .++.+++. |..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 578999999999999974 5889999999999988 77888764 899999999999998
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=5.2e-08 Score=93.20 Aligned_cols=124 Identities=19% Similarity=0.067 Sum_probs=81.5
Q ss_pred hhhccccceEEEecCCCCCcc---ccccccccccceeeccCCCcccccHH--HHccccCceeeccCccchh--hcccccc
Q 044062 17 KLFKLQRLRVFSLRGYRISEL---PDSVGDLRYLRHLNLSGTEIKTLPES--VNKLYNLHTLLLEDCDRLE--KLCADMG 89 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~l---~~~~~~l~~L~~L~L~~~~l~~lp~~--~~~l~~L~~L~L~~~~~~~--~l~~~~~ 89 (567)
....|++++.|||++|-+... -.....+++|+.|+|+.|.+...-++ -..+++|+.|.|+.| .+. ++-.-+.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~ 219 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILL 219 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHH
Confidence 567889999999999976643 24457899999999999887643221 236788999999998 332 2222245
Q ss_pred cccccceeeccCccccccccccccccccccccCceEeccCCCCCcccccccc
Q 044062 90 NLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLM 141 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~ 141 (567)
.+++|+.|++.+|..+.........++.|+.|++..+...+.......+.++
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 6789999999988433332233455677777776665544433333344444
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.37 E-value=1.1e-08 Score=95.13 Aligned_cols=253 Identities=19% Similarity=0.211 Sum_probs=131.5
Q ss_pred hhhccccceEEEecCCCCC-----ccccccccccccceeeccCCC----cccccHHH-------HccccCceeeccCcc-
Q 044062 17 KLFKLQRLRVFSLRGYRIS-----ELPDSVGDLRYLRHLNLSGTE----IKTLPESV-------NKLYNLHTLLLEDCD- 79 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~-----~l~~~~~~l~~L~~L~L~~~~----l~~lp~~~-------~~l~~L~~L~L~~~~- 79 (567)
-...+..++.++|++|.+. .+-+.+.+.++||.-++++-. ...+|+.+ ...++|++++|+.|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4566778899999999876 233556677888888888532 22455443 445788888888871
Q ss_pred ---chhhcccccccccccceeeccCcccccccccc-ccccccccccCceEeccCCCCCccccccccccccceeecccccc
Q 044062 80 ---RLEKLCADMGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENE 155 (567)
Q Consensus 80 ---~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 155 (567)
.+..+..-+.+++.|++|.+.+| .+...... +++ .|.+|....- .+.- +
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~--al~~l~~~kk----------~~~~--------------~ 157 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGR--ALFELAVNKK----------AASK--------------P 157 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHH--HHHHHHHHhc----------cCCC--------------c
Confidence 22222223566788888888888 44422111 111 1222220000 0000 1
Q ss_pred cccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCC-----CcccccCCCCCccceEEEecCCCccc
Q 044062 156 NLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTK-----FPTWLGDSSFSNLVTLKFEDCGMCTV 230 (567)
Q Consensus 156 ~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~ 230 (567)
.|+++....|...+ .....+-..+...+.|+.+.+..+.+.. +...+. .+++|+.|++++|.+...
T Consensus 158 ~Lrv~i~~rNrlen-------~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~--~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 158 KLRVFICGRNRLEN-------GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE--HCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred ceEEEEeecccccc-------ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH--hCCcceeeecccchhhhH
Confidence 66666665542222 1112223334445677877776665421 111122 578888888888876542
Q ss_pred CC-----CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEc
Q 044062 231 LP-----SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDIL 305 (567)
Q Consensus 231 ~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 305 (567)
-. .+..++.|+++++++|. ++.-+...+...-....|+|+.|.+.++..-.+.. ..+...+...|.|++|+++
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~-~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAA-LALAACMAEKPDLEKLNLN 306 (382)
T ss_pred HHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHH-HHHHHHHhcchhhHHhcCC
Confidence 11 34556788888888884 33322211111001225666666666553211110 0001111235666666666
Q ss_pred CC
Q 044062 306 RC 307 (567)
Q Consensus 306 ~c 307 (567)
+|
T Consensus 307 gN 308 (382)
T KOG1909|consen 307 GN 308 (382)
T ss_pred cc
Confidence 64
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=2.9e-06 Score=83.14 Aligned_cols=159 Identities=17% Similarity=0.203 Sum_probs=81.4
Q ss_pred CCCcceEEecCCCCccccccCC-CCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCC
Q 044062 339 LPALCKLEIDGCKKVVWRSATD-HLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICS 417 (567)
Q Consensus 339 ~~~L~~L~l~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 417 (567)
+.+++.|++++|...... .+| +|++|.+.+|..+..++ ..+ .++|+.|++++|..+..+ .++
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP----~~L--P~nLe~L~Ls~Cs~L~sL----------P~s 113 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLP----GSI--PEGLEKLTVCHCPEISGL----------PES 113 (426)
T ss_pred hcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCC----chh--hhhhhheEccCccccccc----------ccc
Confidence 466777777777432222 333 56666666666655444 111 146777777777655433 134
Q ss_pred ccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCc--ccccCCCCCCCccEEEEccCCCCcccCCcCCC
Q 044062 418 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLV--KLPQSSLGLNSLRDIEIYKCSSLVSFPEVALP 495 (567)
Q Consensus 418 L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 495 (567)
|+.|.+.. +....+. .+|++|+.|.+.++.... .++. .-.++|++|.+.+|..+. +| ..++
T Consensus 114 Le~L~L~~-n~~~~L~------------~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP-~~LP 176 (426)
T PRK15386 114 VRSLEIKG-SATDSIK------------NVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LP-EKLP 176 (426)
T ss_pred cceEEeCC-CCCcccc------------cCcchHhheecccccccccccccc--ccCCcccEEEecCCCccc-Cc-cccc
Confidence 66666643 3333221 135677777765432111 1111 122567888887776442 33 2356
Q ss_pred CCccEEEEccCccccccccccccCCCCCccEEEcccccc
Q 044062 496 SKLRKIRISSCDALKSLPEAWMCDTNSSLEILSIKHCCS 534 (567)
Q Consensus 496 ~~L~~L~l~~c~~l~~l~~~~~~l~~~~L~~L~l~~c~~ 534 (567)
.+|+.|+++.+. ...+.-....++ +++ .|++.+|-+
T Consensus 177 ~SLk~L~ls~n~-~~sLeI~~~sLP-~nl-~L~f~n~lk 212 (426)
T PRK15386 177 ESLQSITLHIEQ-KTTWNISFEGFP-DGL-DIDLQNSVL 212 (426)
T ss_pred ccCcEEEecccc-cccccCcccccc-ccc-Eechhhhcc
Confidence 777877775432 111111112233 455 666666644
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.34 E-value=1.4e-07 Score=96.08 Aligned_cols=105 Identities=25% Similarity=0.343 Sum_probs=69.0
Q ss_pred hhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhccccccccccc
Q 044062 15 LPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKL 94 (567)
Q Consensus 15 ~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L 94 (567)
...+..+++|..+++.+|++..+...+..+.+|++|++++|.|+++ ..+..++.|+.|++.+| .+..+ ..+..++.|
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L 164 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDI-SGLESLKSL 164 (414)
T ss_pred hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhc-cCCccchhh
Confidence 3346677777777777777776643366777777777777777776 45666777777777777 56655 346667777
Q ss_pred ceeeccCcccccccccc-ccccccccccCc
Q 044062 95 HHLNNSNTYSLEEMPVG-IGKLTCLQTLSN 123 (567)
Q Consensus 95 ~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~ 123 (567)
+.+++++| .+..+... ...+.+++.+.+
T Consensus 165 ~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 165 KLLDLSYN-RIVDIENDELSELISLEELDL 193 (414)
T ss_pred hcccCCcc-hhhhhhhhhhhhccchHHHhc
Confidence 77777777 55555443 355555555543
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=9.4e-07 Score=94.28 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=47.3
Q ss_pred cceeeccCCCcc-cccHHHHccccCceeeccCccchhhcccccccccccceeeccCccccccccccccccccccccCceE
Q 044062 47 LRHLNLSGTEIK-TLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFV 125 (567)
Q Consensus 47 L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~ 125 (567)
++.|+|++|.+. .+|..+..+++|++|+|++|...+.+|..++.+++|+.|++++|.....+|..++++++|+.|++..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666665 4566666666666666666633345565566666666666666633335555566666666665544
Q ss_pred e
Q 044062 126 V 126 (567)
Q Consensus 126 ~ 126 (567)
+
T Consensus 500 N 500 (623)
T PLN03150 500 N 500 (623)
T ss_pred C
Confidence 3
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.7e-08 Score=88.88 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=71.1
Q ss_pred CCCcceEEecCCCCccc------cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCC-ccccccccCcc
Q 044062 339 LPALCKLEIDGCKKVVW------RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKN-ETYIWKSHNGL 411 (567)
Q Consensus 339 ~~~L~~L~l~~~~~~~~------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~ 411 (567)
-.+|+.++++.|...+. +..+..|..|+++-|........ ....+--++|+.|++++|.. +... ....+
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~rrnl~~s--h~~tL 308 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYRRNLQKS--HLSTL 308 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh--HHHhhhchhhhhhhhhhhHhhhhhh--HHHHH
Confidence 34445555555544433 33444555555554443332210 01122235677777777753 3332 33445
Q ss_pred ccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCc-ccccCCCCCCCccEEEEccC
Q 044062 412 LQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLV-KLPQSSLGLNSLRDIEIYKC 483 (567)
Q Consensus 412 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~L~~L~l~~c 483 (567)
...+|+|.+|++++|..+++-....+ ..+ +.|++|.+++|..+. .-.-.+.+.|+|.+|++.+|
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~----~kf----~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEF----FKF----NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHH----Hhc----chheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 56778888888888777765322222 344 777777777777543 11223456667777777665
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.7e-08 Score=90.37 Aligned_cols=134 Identities=17% Similarity=0.118 Sum_probs=56.9
Q ss_pred CCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCc---c
Q 044062 388 PKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLV---K 464 (567)
Q Consensus 388 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~---~ 464 (567)
.+|+.++++.|.-++.. ....++..+..|..|.+++|--.+.......++. .++|..|++++|..-- .
T Consensus 234 ~~L~~lnlsm~sG~t~n--~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi-------se~l~~LNlsG~rrnl~~sh 304 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTEN--ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI-------SETLTQLNLSGYRRNLQKSH 304 (419)
T ss_pred ccceeeccccccccchh--HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh-------chhhhhhhhhhhHhhhhhhH
Confidence 34555555555544444 3333334555555555555533332211111111 1455555555553211 1
Q ss_pred cccCCCCCCCccEEEEccCCCCccc-CCc-CCCCCccEEEEccCcccccc-ccccccCCCCCccEEEcccc
Q 044062 465 LPQSSLGLNSLRDIEIYKCSSLVSF-PEV-ALPSKLRKIRISSCDALKSL-PEAWMCDTNSSLEILSIKHC 532 (567)
Q Consensus 465 ~~~~~~~~~~L~~L~l~~c~~l~~~-~~~-~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~~~L~~L~l~~c 532 (567)
+.-....+++|.+|+++.|..++.- ... .-++.|+.|.++.|..+-.- .-.+... |+|.+|++.||
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~--psl~yLdv~g~ 373 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSK--PSLVYLDVFGC 373 (419)
T ss_pred HHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccC--cceEEEEeccc
Confidence 1112234555555555555444430 000 01455555555555443210 0022223 55566665554
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.17 E-value=1.4e-07 Score=87.95 Aligned_cols=125 Identities=20% Similarity=0.187 Sum_probs=77.1
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCC----CCccc-------cccccccccceeeccCCCcc-ccc----HHH
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYR----ISELP-------DSVGDLRYLRHLNLSGTEIK-TLP----ESV 64 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~----~~~l~-------~~~~~l~~L~~L~L~~~~l~-~lp----~~~ 64 (567)
||+|.+..--.-.+-+.+.+-++|+.-+++.-- ...+| +++..+++|++||||+|.+. +-+ .-+
T Consensus 37 lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll 116 (382)
T KOG1909|consen 37 LSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELL 116 (382)
T ss_pred ccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHH
Confidence 345555442223444567888899999988641 11333 34557889999999999876 333 336
Q ss_pred HccccCceeeccCccchhhcc--------------cccccccccceeeccCccccccccc-----cccccccccccCceE
Q 044062 65 NKLYNLHTLLLEDCDRLEKLC--------------ADMGNLTKLHHLNNSNTYSLEEMPV-----GIGKLTCLQTLSNFV 125 (567)
Q Consensus 65 ~~l~~L~~L~L~~~~~~~~l~--------------~~~~~l~~L~~L~l~~~~~~~~lp~-----~~~~l~~L~~L~~~~ 125 (567)
..+..|++|.|.+| .++... ..++.=++|+++..+.| .+..-+. .+...+.|+.+.+..
T Consensus 117 ~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~q 194 (382)
T KOG1909|consen 117 SSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQ 194 (382)
T ss_pred HhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEec
Confidence 78899999999998 443221 11233467888888887 6654432 234445555554444
Q ss_pred ec
Q 044062 126 VG 127 (567)
Q Consensus 126 ~~ 127 (567)
++
T Consensus 195 N~ 196 (382)
T KOG1909|consen 195 NG 196 (382)
T ss_pred cc
Confidence 43
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=2.1e-06 Score=55.85 Aligned_cols=38 Identities=32% Similarity=0.531 Sum_probs=21.5
Q ss_pred cceEEEecCCCCCccccccccccccceeeccCCCcccc
Q 044062 23 RLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTL 60 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~l 60 (567)
+|++|++++|+++.+|+.+.+|++|+.|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45666666666666555556666666666666665554
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=8.1e-07 Score=71.52 Aligned_cols=105 Identities=24% Similarity=0.246 Sum_probs=64.9
Q ss_pred ccccchhhhhhh---hhhccccceEEEecCCCCCcccccc-ccccccceeeccCCCcccccHHHHccccCceeeccCccc
Q 044062 5 RLHGYLALSILP---KLFKLQRLRVFSLRGYRISELPDSV-GDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDR 80 (567)
Q Consensus 5 ~l~~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~l~~~~-~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 80 (567)
+++.+.+..++. .+.+..+|...+|++|.+..+|+.| ..++-++.|+++.|.+.++|..+..++.||.|+++.| .
T Consensus 33 dLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~ 111 (177)
T KOG4579|consen 33 DLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-P 111 (177)
T ss_pred ccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-c
Confidence 344444444444 3445555666677777777776666 4455677777777777777777777777777777776 4
Q ss_pred hhhcccccccccccceeeccCcccccccccc
Q 044062 81 LEKLCADMGNLTKLHHLNNSNTYSLEEMPVG 111 (567)
Q Consensus 81 ~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~ 111 (567)
+...|.-+..|.+|-.|+..++ -...+|-+
T Consensus 112 l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 112 LNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 5555555666777777776666 44444433
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.08 E-value=4.1e-07 Score=92.67 Aligned_cols=104 Identities=26% Similarity=0.374 Sum_probs=79.1
Q ss_pred ccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeec
Q 044062 20 KLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNN 99 (567)
Q Consensus 20 ~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l 99 (567)
.+..+..+++..|.+..+-..+..+++|+.|++.+|.+..+...+..+++|++|++++| .++++ ..+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhee
Confidence 45566667777777776445578889999999999999888555888999999999998 77777 45788888999999
Q ss_pred cCccccccccccccccccccccCceEec
Q 044062 100 SNTYSLEEMPVGIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 100 ~~~~~~~~lp~~~~~l~~L~~L~~~~~~ 127 (567)
.+| .++.+. ++..+++|+.+++.++.
T Consensus 148 ~~N-~i~~~~-~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 148 SGN-LISDIS-GLESLKSLKLLDLSYNR 173 (414)
T ss_pred ccC-cchhcc-CCccchhhhcccCCcch
Confidence 999 676653 35557777777665554
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=3.3e-06 Score=54.95 Aligned_cols=39 Identities=33% Similarity=0.536 Sum_probs=23.8
Q ss_pred cccceeeccCCCcccccHHHHccccCceeeccCccchhhc
Q 044062 45 RYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKL 84 (567)
Q Consensus 45 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l 84 (567)
++|++|++++|.++++|..+++|++|++|++++| .++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 3566777777777666666666666777766666 44444
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.01 E-value=4.9e-07 Score=94.72 Aligned_cols=231 Identities=23% Similarity=0.283 Sum_probs=133.4
Q ss_pred CCCcccEEEEecchhh-----hhhcCCCCCcceEEecCC-CCccc--------cccCCCCCcccccccCCCccccccCCC
Q 044062 317 HLPALQMLVIQECKEL-----LVSITSLPALCKLEIDGC-KKVVW--------RSATDHLGSQNSVVCRDTSNQVFLAGP 382 (567)
Q Consensus 317 ~l~~L~~L~i~~~~~l-----~~~~~~~~~L~~L~l~~~-~~~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~~~ 382 (567)
..+.|+.+.+.+|..+ ......+++|+.|+++++ ..... ...+++|++++++.+..+++.... .
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~--~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS--A 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH--H
Confidence 4688888888887543 234456889999999873 32222 445678888888888865443210 1
Q ss_pred CCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCC---
Q 044062 383 LKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSC--- 459 (567)
Q Consensus 383 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c--- 459 (567)
....+++|+.|.+.+|..+++. ....++..++.|++|++++|..+++-........+ ++|+.+.+..+
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~--gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c-------~~l~~l~~~~~~~c 334 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDE--GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC-------PNLRELKLLSLNGC 334 (482)
T ss_pred HHhhCCCcceEccCCCCccchh--HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC-------cchhhhhhhhcCCC
Confidence 1233778888888888876665 56666677888888888888877543322222222 55555544443
Q ss_pred CCCccc--ccCCCCC-CCccEEEEccCCCCcccCCcCC-CCCcc-EEEEccCcccc-ccccccccCCCCCccEEEccccc
Q 044062 460 EGLVKL--PQSSLGL-NSLRDIEIYKCSSLVSFPEVAL-PSKLR-KIRISSCDALK-SLPEAWMCDTNSSLEILSIKHCC 533 (567)
Q Consensus 460 ~~l~~~--~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~-~~~L~-~L~l~~c~~l~-~l~~~~~~l~~~~L~~L~l~~c~ 533 (567)
..++.. ....... ..+..+.+.+|++++++..... ..... .+.+.+|+.++ .+..-.... .+++.|.+..|.
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~--~~l~~L~l~~~~ 412 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRS--DSLRVLNLSDCR 412 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccC--CccceEecccCc
Confidence 334422 1111122 2566666666666665432211 12222 45667788773 222111111 448899999888
Q ss_pred ccccccccCc---ccccCeEEEeeCCCCCc
Q 044062 534 SLTYIAEAQL---PLSLKQLVIHNCDNMRT 560 (567)
Q Consensus 534 ~l~~~~~~~~---~~~L~~l~~~~c~~l~~ 560 (567)
.++.-..... ..+++.+.+.+|+.+..
T Consensus 413 ~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 413 LVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cccccchHHHhhhhhccccCCccCcccccc
Confidence 7764332221 24567777777776653
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.00 E-value=3.4e-07 Score=93.06 Aligned_cols=109 Identities=25% Similarity=0.236 Sum_probs=82.3
Q ss_pred hhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHH-HHccccCceeeccCccchhhccccccccc
Q 044062 14 ILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDCDRLEKLCADMGNLT 92 (567)
Q Consensus 14 ~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~ 92 (567)
+-.++.-++.++.|+|++|+++.+ ..+..|++|+.|||++|.+..+|.- ...+. |..|+|++| .++++ .++.+|+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~Lk 254 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENLK 254 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhh-hhHHhhh
Confidence 555677788899999999988877 4778888999999999998888754 33344 889999988 77777 5688999
Q ss_pred ccceeeccCccccccccc--cccccccccccCceEec
Q 044062 93 KLHHLNNSNTYSLEEMPV--GIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 93 ~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~~~~~~ 127 (567)
+|+.||+++| .+..... -++.|..|++|.+.++.
T Consensus 255 sL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 255 SLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999999988 5554432 26667777777765553
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=3e-07 Score=93.41 Aligned_cols=118 Identities=25% Similarity=0.178 Sum_probs=97.9
Q ss_pred hccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccc-ccccccccee
Q 044062 19 FKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKLHHL 97 (567)
Q Consensus 19 ~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L 97 (567)
..+..|.+.+.++|.+..+..++.-++.|+.|||+.|++++. ..+..+++|++|||+.| .++.+|.. ...++ |+.|
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccc-hhccccccchhhhh-heee
Confidence 356678899999999988888999999999999999999987 48999999999999999 78888763 33455 9999
Q ss_pred eccCccccccccccccccccccccCceEeccCCCCCcccccccc
Q 044062 98 NNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLM 141 (567)
Q Consensus 98 ~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~ 141 (567)
.+++| .++.+ .++.+|++|+.|++.++-......+..+..|.
T Consensus 238 ~lrnN-~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs 279 (1096)
T KOG1859|consen 238 NLRNN-ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLS 279 (1096)
T ss_pred eeccc-HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHH
Confidence 99999 77776 46999999999998887665555566666666
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.80 E-value=2.2e-06 Score=89.76 Aligned_cols=234 Identities=25% Similarity=0.368 Sum_probs=149.3
Q ss_pred CCCCccEEEEcCCCCcccC----CCCCCCcccEEEEecc-hh-------hhhhcCCCCCcceEEecCCCCccc------c
Q 044062 295 RFPKLRELDILRCSKLQGT----FPEHLPALQMLVIQEC-KE-------LLVSITSLPALCKLEIDGCKKVVW------R 356 (567)
Q Consensus 295 ~~~~L~~L~l~~c~~l~~~----~~~~l~~L~~L~i~~~-~~-------l~~~~~~~~~L~~L~l~~~~~~~~------~ 356 (567)
.++.|+.+.+.+|..+.+. +....+.|++|++++| .. .......+++|+.++++++..+++ .
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4799999999999888742 2246799999999873 21 122334578999999999997665 3
Q ss_pred ccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCC---ccccc
Q 044062 357 SATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPK---LQSLV 433 (567)
Q Consensus 357 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~---l~~~~ 433 (567)
..+++|+.|.+..|..++... -......++.|++|++++|..+.+. .....+..+++|+.+.+..+.. ++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~g--l~~i~~~~~~L~~L~l~~c~~~~d~--~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~ 341 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEG--LVSIAERCPSLRELDLSGCHGLTDS--GLEALLKNCPNLRELKLLSLNGCPSLTDLS 341 (482)
T ss_pred hhCCCcceEccCCCCccchhH--HHHHHHhcCcccEEeeecCccchHH--HHHHHHHhCcchhhhhhhhcCCCccHHHHH
Confidence 358899999998898743322 0133566888999999999987554 3344445678877776655443 44443
Q ss_pred hhhhhHHHhhhhhccC-ceeEEEccCCCCCcccccCCCCCCCcc-EEEEccCCCC-cccCCc-CCCCCccEEEEccCccc
Q 044062 434 AEEEKDQQQQLCELSC-RLEYLGLRSCEGLVKLPQSSLGLNSLR-DIEIYKCSSL-VSFPEV-ALPSKLRKIRISSCDAL 509 (567)
Q Consensus 434 ~~~~~~~~~~l~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~~L~-~L~l~~c~~l-~~~~~~-~~~~~L~~L~l~~c~~l 509 (567)
.... ... .. .+..+.+.+|+.++...-......... .+.+.+|+.+ ..+... ....+++.|.++.|...
T Consensus 342 l~~~----~~~---~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 342 LSGL----LTL---TSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred HHHh----hcc---CchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccc
Confidence 3222 111 12 567777777877775422111122333 5777888877 333222 12334999999999877
Q ss_pred cccccccccCCCCCccEEEccccccccccc
Q 044062 510 KSLPEAWMCDTNSSLEILSIKHCCSLTYIA 539 (567)
Q Consensus 510 ~~l~~~~~~l~~~~L~~L~l~~c~~l~~~~ 539 (567)
+.-.-......+..++.+.+.+|+.++.-.
T Consensus 415 t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 415 TDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred cccchHHHhhhhhccccCCccCcccccchh
Confidence 743211111113678889999988776544
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.77 E-value=2.6e-05 Score=67.47 Aligned_cols=101 Identities=25% Similarity=0.299 Sum_probs=66.9
Q ss_pred cceEEEecCCCCCccccccccccccceeeccCCCcccccHHH-HccccCceeeccCccchhhccc--ccccccccceeec
Q 044062 23 RLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESV-NKLYNLHTLLLEDCDRLEKLCA--DMGNLTKLHHLNN 99 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~~L~L~~~~~~~~l~~--~~~~l~~L~~L~l 99 (567)
+...+||+.|.+..+ ..|+.++.|..|.+.+|+|+.+-+.+ ..+++|..|.|.+| .+.++.+ .+..|++|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 456677777777665 56677778888888888888774443 34566888888877 4544422 2566778888888
Q ss_pred cCccccccccc----cccccccccccCceEe
Q 044062 100 SNTYSLEEMPV----GIGKLTCLQTLSNFVV 126 (567)
Q Consensus 100 ~~~~~~~~lp~----~~~~l~~L~~L~~~~~ 126 (567)
-+| .+..... -+..+++|+.|+...+
T Consensus 121 l~N-pv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGN-PVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCC-chhcccCceeEEEEecCcceEeehhhh
Confidence 777 4554432 2677777777764433
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=9.5e-06 Score=65.49 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=70.0
Q ss_pred cccchhhhhhhhh-hccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhc
Q 044062 6 LHGYLALSILPKL-FKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKL 84 (567)
Q Consensus 6 l~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l 84 (567)
+++|..-.+|+.| .+++..+.|++++|+++.+|..+..++.||.|+++.|.+...|+.|..+.++-+|+.-++ ....+
T Consensus 60 ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~ei 138 (177)
T KOG4579|consen 60 LSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEI 138 (177)
T ss_pred cccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC-ccccC
Confidence 4555555688876 556689999999999999998999999999999999999999999999999999999887 67777
Q ss_pred ccc
Q 044062 85 CAD 87 (567)
Q Consensus 85 ~~~ 87 (567)
|..
T Consensus 139 d~d 141 (177)
T KOG4579|consen 139 DVD 141 (177)
T ss_pred cHH
Confidence 655
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.50 E-value=0.00015 Score=62.92 Aligned_cols=62 Identities=26% Similarity=0.302 Sum_probs=28.2
Q ss_pred hhhccccceEEEecCCCCCcccccc-ccccccceeeccCCCccccc--HHHHccccCceeeccCc
Q 044062 17 KLFKLQRLRVFSLRGYRISELPDSV-GDLRYLRHLNLSGTEIKTLP--ESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~l~~~~-~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~ 78 (567)
.|+++.+|.+|.+.+|.|+.+.+.+ .-+++|..|.|++|.+..+. ..+..++.|++|.+-+|
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 4444445555555555554443333 33344555555555444331 22344445555554444
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=2.3e-05 Score=71.81 Aligned_cols=97 Identities=21% Similarity=0.180 Sum_probs=54.8
Q ss_pred cceEEEecCCCCCccc--ccc-ccccccceeeccCCCcc---cccHHHHccccCceeeccCcc---chhhcccccccccc
Q 044062 23 RLRVFSLRGYRISELP--DSV-GDLRYLRHLNLSGTEIK---TLPESVNKLYNLHTLLLEDCD---RLEKLCADMGNLTK 93 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~--~~~-~~l~~L~~L~L~~~~l~---~lp~~~~~l~~L~~L~L~~~~---~~~~l~~~~~~l~~ 93 (567)
.+..+.+.++.+...- ..| ..++.++.|||.+|.++ ++...+.+++.|+.|+|+.|. .++.+| ..+++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 3345555555554321 223 56777888888888776 344456778888888888762 222222 23457
Q ss_pred cceeeccCccccc-cccccccccccccccC
Q 044062 94 LHHLNNSNTYSLE-EMPVGIGKLTCLQTLS 122 (567)
Q Consensus 94 L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~ 122 (567)
|+.|-+.|...-+ .....+..++.++.|.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 7777777763222 2222355555555554
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=0.00021 Score=76.44 Aligned_cols=31 Identities=35% Similarity=0.562 Sum_probs=14.7
Q ss_pred cccccceeeccCccccccccccccccccccccC
Q 044062 90 NLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLS 122 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 122 (567)
++++|..||++++ .+..+ .++++|++|+.|.
T Consensus 171 sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 171 SFPNLRSLDISGT-NISNL-SGISRLKNLQVLS 201 (699)
T ss_pred ccCccceeecCCC-CccCc-HHHhccccHHHHh
Confidence 4445555555554 34443 3444455555544
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.00044 Score=63.63 Aligned_cols=184 Identities=14% Similarity=0.115 Sum_probs=96.2
Q ss_pred CCCcceEEecCCCCccc------cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccc
Q 044062 339 LPALCKLEIDGCKKVVW------RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLL 412 (567)
Q Consensus 339 ~~~L~~L~l~~~~~~~~------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 412 (567)
+..++.+++.+|..... ...+|.|+.|++++|+.-..+. ..+....+|++|-+.+.. + -|+...++.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~----~lp~p~~nl~~lVLNgT~-L--~w~~~~s~l 142 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK----SLPLPLKNLRVLVLNGTG-L--SWTQSTSSL 142 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc----cCcccccceEEEEEcCCC-C--Chhhhhhhh
Confidence 44555556655554433 3455666666666555443333 122334577777776644 2 233555666
Q ss_pred cCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCc--ccccCCCCCCCccEEEEccCCCCcccC
Q 044062 413 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLV--KLPQSSLGLNSLRDIEIYKCSSLVSFP 490 (567)
Q Consensus 413 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~~L~~L~l~~c~~l~~~~ 490 (567)
..+|.+++|.++. +.++.+-.++.+- ++-.+.++.+++..|.... .+.....-||++..+-+..|| +++..
T Consensus 143 ~~lP~vtelHmS~-N~~rq~n~Dd~c~-----e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s 215 (418)
T KOG2982|consen 143 DDLPKVTELHMSD-NSLRQLNLDDNCI-----EDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTES 215 (418)
T ss_pred hcchhhhhhhhcc-chhhhhccccccc-----cccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchh
Confidence 7778888888876 4444332221100 0001466777777776433 122223457788888888876 34433
Q ss_pred Cc-C--CCCCccEEEEccCcccccccc--ccccCCCCCccEEEccccccccccc
Q 044062 491 EV-A--LPSKLRKIRISSCDALKSLPE--AWMCDTNSSLEILSIKHCCSLTYIA 539 (567)
Q Consensus 491 ~~-~--~~~~L~~L~l~~c~~l~~l~~--~~~~l~~~~L~~L~l~~c~~l~~~~ 539 (567)
.+ + -.|.+-.|.+ +-+++.+... .+..+ |.|..|.+.+.|-...+.
T Consensus 216 ~ek~se~~p~~~~LnL-~~~~idswasvD~Ln~f--~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 216 SEKGSEPFPSLSCLNL-GANNIDSWASVDALNGF--PQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hcccCCCCCcchhhhh-cccccccHHHHHHHcCC--chhheeeccCCccccccc
Confidence 22 1 1455555555 2234444321 33334 677777777766555444
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.0003 Score=75.27 Aligned_cols=156 Identities=18% Similarity=0.157 Sum_probs=77.0
Q ss_pred CCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhh
Q 044062 359 TDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEK 438 (567)
Q Consensus 359 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 438 (567)
..+|++|+|++...+..-+.. ..-..+|+|++|.+.+-....+- ...+...||+|..|++++ .++++++.-
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~--kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~-TnI~nl~GI--- 191 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPK--KIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISG-TNISNLSGI--- 191 (699)
T ss_pred HHhhhhcCccccchhhccHHH--HHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCC-CCccCcHHH---
Confidence 457788888775554322200 11234677777777775422221 112225667777777777 455544211
Q ss_pred HHHhhhhhccCceeEEEccCCCCCc-ccccCCCCCCCccEEEEccCCCCcc-------cCCcCCCCCccEEEEccCcccc
Q 044062 439 DQQQQLCELSCRLEYLGLRSCEGLV-KLPQSSLGLNSLRDIEIYKCSSLVS-------FPEVALPSKLRKIRISSCDALK 510 (567)
Q Consensus 439 ~~~~~l~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~-------~~~~~~~~~L~~L~l~~c~~l~ 510 (567)
..| ++|+.|.+.+...-. .--..+..+++|+.|||+.-..... +.....+|.|+.||.++-..=.
T Consensus 192 ---S~L----knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 192 ---SRL----KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ---hcc----ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 233 666666665543211 1112345677777777776322211 1111336777777776422111
Q ss_pred cccc-ccccCCCCCccEEEcccc
Q 044062 511 SLPE-AWMCDTNSSLEILSIKHC 532 (567)
Q Consensus 511 ~l~~-~~~~l~~~~L~~L~l~~c 532 (567)
.+-+ .+... |+|+.+.+.+|
T Consensus 265 ~~le~ll~sH--~~L~~i~~~~~ 285 (699)
T KOG3665|consen 265 EILEELLNSH--PNLQQIAALDC 285 (699)
T ss_pred HHHHHHHHhC--ccHhhhhhhhh
Confidence 2111 22223 56666665554
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=8e-05 Score=67.65 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=75.2
Q ss_pred hccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcc--cccccccccce
Q 044062 19 FKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLC--ADMGNLTKLHH 96 (567)
Q Consensus 19 ~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~--~~~~~l~~L~~ 96 (567)
..+.+.+.|++.||.++.+ ..+..++.|+||.|+-|.|+.+ ..+..+++|+.|.|..| .+.++- ..+.++++|+.
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 3456778889999998877 6668899999999999999988 55888999999999988 455442 23567888888
Q ss_pred eeccCcccccccc-----ccccccccccccCce
Q 044062 97 LNNSNTYSLEEMP-----VGIGKLTCLQTLSNF 124 (567)
Q Consensus 97 L~l~~~~~~~~lp-----~~~~~l~~L~~L~~~ 124 (567)
|.+..|.=...-+ .-+..|++|+.|+..
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 8887663222111 125667888888643
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.00018 Score=65.44 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=71.1
Q ss_pred ccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeeccCccccccccc--ccccccccc
Q 044062 42 GDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPV--GIGKLTCLQ 119 (567)
Q Consensus 42 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~ 119 (567)
..+.+.+.|+..+|.++++ ..+.+|+.|++|.|+-| .+.++ +.+..|++|++|++..| .+..+-+ -+.++++|+
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLR 91 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhh
Confidence 3467788999999999988 66889999999999998 78877 45999999999999999 7777653 378889999
Q ss_pred ccCceEeccCCC
Q 044062 120 TLSNFVVGKDSG 131 (567)
Q Consensus 120 ~L~~~~~~~~~~ 131 (567)
.|.+..+.++..
T Consensus 92 ~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 92 TLWLDENPCCGE 103 (388)
T ss_pred hHhhccCCcccc
Confidence 998776666553
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.00076 Score=61.18 Aligned_cols=104 Identities=22% Similarity=0.254 Sum_probs=68.0
Q ss_pred hhhccccceEEEecCCCCCccccccccccccceeeccCC--Ccc-cccHHHHccccCceeeccCccchhhcc--cccccc
Q 044062 17 KLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGT--EIK-TLPESVNKLYNLHTLLLEDCDRLEKLC--ADMGNL 91 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~--~l~-~lp~~~~~l~~L~~L~L~~~~~~~~l~--~~~~~l 91 (567)
-...+..|..+.+.+..++.+ ..++.+++|+.|.++.| ++. .++.....+++|++|++++| .++.+. ..+.++
T Consensus 38 l~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhh
Confidence 344556667777666666655 56777888999999888 444 45445566689999999988 444321 226677
Q ss_pred cccceeeccCcccccccc----ccccccccccccCc
Q 044062 92 TKLHHLNNSNTYSLEEMP----VGIGKLTCLQTLSN 123 (567)
Q Consensus 92 ~~L~~L~l~~~~~~~~lp----~~~~~l~~L~~L~~ 123 (567)
.+|..|++..| ....+- .-+.-+++|+.|+-
T Consensus 116 ~nL~~Ldl~n~-~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 116 ENLKSLDLFNC-SVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcccC-CccccccHHHHHHHHhhhhccccc
Confidence 78888888887 444332 11455677777753
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.27 E-value=0.0017 Score=59.00 Aligned_cols=87 Identities=30% Similarity=0.368 Sum_probs=65.0
Q ss_pred hhhhhccccceEEEecCCC--CC-ccccccccccccceeeccCCCcccc--cHHHHccccCceeeccCccchhhcc----
Q 044062 15 LPKLFKLQRLRVFSLRGYR--IS-ELPDSVGDLRYLRHLNLSGTEIKTL--PESVNKLYNLHTLLLEDCDRLEKLC---- 85 (567)
Q Consensus 15 ~~~~~~l~~L~~L~L~~~~--~~-~l~~~~~~l~~L~~L~L~~~~l~~l--p~~~~~l~~L~~L~L~~~~~~~~l~---- 85 (567)
...++.+++|+.|.++.|+ +. .++.....+++|++|++++|++..+ -.....+.+|..|++.+|. ...+-
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~-~~~l~dyre 136 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS-VTNLDDYRE 136 (260)
T ss_pred cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC-ccccccHHH
Confidence 3468899999999999994 43 4444446679999999999998754 2447888999999999983 33231
Q ss_pred cccccccccceeeccCc
Q 044062 86 ADMGNLTKLHHLNNSNT 102 (567)
Q Consensus 86 ~~~~~l~~L~~L~l~~~ 102 (567)
..|..+++|.+||-...
T Consensus 137 ~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHHhhhhcccccccc
Confidence 12567789998887665
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.14 E-value=0.0018 Score=58.92 Aligned_cols=88 Identities=25% Similarity=0.243 Sum_probs=48.6
Q ss_pred hhccccceEEEecCCCCCc-----cccccccccccceeeccCCCcc----ccc-------HHHHccccCceeeccCccch
Q 044062 18 LFKLQRLRVFSLRGYRISE-----LPDSVGDLRYLRHLNLSGTEIK----TLP-------ESVNKLYNLHTLLLEDCDRL 81 (567)
Q Consensus 18 ~~~l~~L~~L~L~~~~~~~-----l~~~~~~l~~L~~L~L~~~~l~----~lp-------~~~~~l~~L~~L~L~~~~~~ 81 (567)
+.-+..+..++||||.|.. +...+.+-++|++-++++-... ++| ..+-++++|+..+|+.|-.-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3345667777777777651 2233445566777776643211 223 33455677777777776221
Q ss_pred hhcc----cccccccccceeeccCccccc
Q 044062 82 EKLC----ADMGNLTKLHHLNNSNTYSLE 106 (567)
Q Consensus 82 ~~l~----~~~~~l~~L~~L~l~~~~~~~ 106 (567)
.+.| ..+++-+.|++|.+++| .+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn-GlG 133 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN-GLG 133 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC-CCC
Confidence 1222 22455677777777777 444
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.00 E-value=0.00045 Score=62.71 Aligned_cols=199 Identities=20% Similarity=0.195 Sum_probs=105.5
Q ss_pred ccccccccceeeccCCCccc-----ccHHHHccccCceeeccCc---cchhhcc-------cccccccccceeeccCccc
Q 044062 40 SVGDLRYLRHLNLSGTEIKT-----LPESVNKLYNLHTLLLEDC---DRLEKLC-------ADMGNLTKLHHLNNSNTYS 104 (567)
Q Consensus 40 ~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~~---~~~~~l~-------~~~~~l~~L~~L~l~~~~~ 104 (567)
.+..+..+..++|++|.+.+ +...+..-.+||..+++.- +...+++ +.+-+|++|+..+++.|..
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34457788888999888862 3344666778888887752 1222333 3345788899999988743
Q ss_pred ccccccc----ccccccccccCceEeccCCC--CCccccccccccccceeecccccccccceEEEeeecCCCCCCccchh
Q 044062 105 LEEMPVG----IGKLTCLQTLSNFVVGKDSG--LRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAET 178 (567)
Q Consensus 105 ~~~lp~~----~~~l~~L~~L~~~~~~~~~~--~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 178 (567)
-...|+. |..-+.|.+|.+..++.... ..+. ..+.++... =+.-+.+.|+.+....|...++ +
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la~n--KKaa~kp~Le~vicgrNRleng-------s 173 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLAYN--KKAADKPKLEVVICGRNRLENG-------S 173 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHHHH--hhhccCCCceEEEeccchhccC-------c
Confidence 3344433 56667788887655543221 1111 011111000 0001113666666654322221 1
Q ss_pred hhhhhccCCCCCCCcEEEEeecCCCCC--c--ccccCCCCCccceEEEecCCCcccCC-----CCCCCCCCcEEEEeCCc
Q 044062 179 EMGVLDMLKPHKNLEQFGICGYGGTKF--P--TWLGDSSFSNLVTLKFEDCGMCTVLP-----SVGQLPSLKHLTVRGMS 249 (567)
Q Consensus 179 ~~~~l~~l~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~ 249 (567)
..-.-..+....+|+.+.+..+.+..- . ...+-+-+.+|+.|++++|.++..-. .+...+.|++|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 111112233335788888877654321 1 01111246788888888887654321 23334568888888874
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.83 E-value=0.003 Score=34.02 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=5.9
Q ss_pred cceeeccCCCccccc
Q 044062 47 LRHLNLSGTEIKTLP 61 (567)
Q Consensus 47 L~~L~L~~~~l~~lp 61 (567)
|++||+++|+++.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 333444444333333
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.36 E-value=0.0068 Score=32.60 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=18.2
Q ss_pred cceEEEecCCCCCccccccccc
Q 044062 23 RLRVFSLRGYRISELPDSVGDL 44 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~~~~~~l 44 (567)
+|++|++++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999998777653
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.0017 Score=56.55 Aligned_cols=87 Identities=22% Similarity=0.370 Sum_probs=59.5
Q ss_pred cCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCccc-ccC
Q 044062 390 LEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKL-PQS 468 (567)
Q Consensus 390 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~ 468 (567)
++.++-+++. +..+ ..+.+ ..++.++.|.+.+|..+.+...+.+.. +.++|+.|++++|+.+++- ...
T Consensus 103 IeaVDAsds~-I~~e--Gle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~-------~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYE--GLEHL-RDLRSIKSLSLANCKYFDDWCLERLGG-------LAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred EEEEecCCch-HHHH--HHHHH-hccchhhhheeccccchhhHHHHHhcc-------cccchheeeccCCCeechhHHHH
Confidence 6677777766 4444 45555 778888888888888777655544411 2388999999999888853 234
Q ss_pred CCCCCCccEEEEccCCCCc
Q 044062 469 SLGLNSLRDIEIYKCSSLV 487 (567)
Q Consensus 469 ~~~~~~L~~L~l~~c~~l~ 487 (567)
+..+++|+.|.+.+.+.+.
T Consensus 172 L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHhhhhHHHHhcCchhhh
Confidence 5577888888888765443
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.97 E-value=0.002 Score=57.21 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=60.6
Q ss_pred hhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccce
Q 044062 17 KLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHH 96 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 96 (567)
++...++.++||++.|++-.+-.-|+.++.|..||++.|.+..+|..++.+..++.+++++| .....|.+++++++++.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 45666677777777776665555666677777777777777777777777777777777766 56667777777777777
Q ss_pred eeccCc
Q 044062 97 LNNSNT 102 (567)
Q Consensus 97 L~l~~~ 102 (567)
++.-++
T Consensus 116 ~e~k~~ 121 (326)
T KOG0473|consen 116 NEQKKT 121 (326)
T ss_pred hhhccC
Confidence 777666
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.49 E-value=0.023 Score=28.25 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=4.7
Q ss_pred cceeeccCCCcccc
Q 044062 47 LRHLNLSGTEIKTL 60 (567)
Q Consensus 47 L~~L~L~~~~l~~l 60 (567)
|++|++++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444333
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.31 E-value=0.0023 Score=56.87 Aligned_cols=73 Identities=15% Similarity=0.066 Sum_probs=65.2
Q ss_pred chhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccch
Q 044062 9 YLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRL 81 (567)
Q Consensus 9 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~ 81 (567)
|....+-..|..++.+..|+++.|++..+|+++.....++.+++..|+...+|.+++..++++++++.++...
T Consensus 52 ~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 52 NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 3334467789999999999999999999999999999999999999999999999999999999999998533
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.29 E-value=0.066 Score=44.39 Aligned_cols=102 Identities=12% Similarity=0.320 Sum_probs=59.6
Q ss_pred hhh-hhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhcccc-cc
Q 044062 14 ILP-KLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKLCAD-MG 89 (567)
Q Consensus 14 ~~~-~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~~-~~ 89 (567)
++. .|..+++|+.+.+.. .+..++ .+|..+++|+.+.+..+ +..++. .|..+++++.+.+.+ .+..++.. |.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccc
Confidence 444 588888999999885 566674 56889989999999875 676654 477888899999975 45555544 67
Q ss_pred cccccceeeccCcccccccccc-ccccccccccC
Q 044062 90 NLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLS 122 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~ 122 (567)
.+++|+.+++..+ +..++.. +.+. .|+.+.
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEE
Confidence 7899999998664 4445433 5555 665553
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.81 E-value=0.54 Score=38.78 Aligned_cols=102 Identities=19% Similarity=0.256 Sum_probs=44.9
Q ss_pred CCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCC
Q 044062 383 LKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGL 462 (567)
Q Consensus 383 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l 462 (567)
.+..+.+|+.+.+.. .+..+ +...| ..+++|+.+.+.+ .++.+....+ .+. ++++.+.+.+ .+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I--~~~~F-~~~~~l~~i~~~~--~~~~i~~~~F----~~~----~~l~~i~~~~--~~ 69 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKI--GENAF-SNCTSLKSINFPN--NLTSIGDNAF----SNC----KSLESITFPN--NL 69 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE---TTTT-TT-TT-SEEEESS--TTSCE-TTTT----TT-----TT-EEEEETS--TT
T ss_pred HHhCCCCCCEEEECC--CeeEe--Chhhc-ccccccccccccc--cccccceeee----ecc----cccccccccc--cc
Confidence 355666777777663 35555 44455 6666777777754 3555655544 232 4677777754 24
Q ss_pred ccccc-CCCCCCCccEEEEccCCCCcccCCcCC-CCCccEEEE
Q 044062 463 VKLPQ-SSLGLNSLRDIEIYKCSSLVSFPEVAL-PSKLRKIRI 503 (567)
Q Consensus 463 ~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l 503 (567)
..++. .+..+++|+.+.+.. .+..+....+ -..++.+.+
T Consensus 70 ~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~ 110 (129)
T PF13306_consen 70 KSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINI 110 (129)
T ss_dssp -EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-
T ss_pred cccccccccccccccccccCc--cccEEchhhhcCCCceEEEE
Confidence 44433 334567777777754 2444443322 124555554
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=0.019 Score=50.17 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=32.3
Q ss_pred cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCC
Q 044062 356 RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCP 427 (567)
Q Consensus 356 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 427 (567)
+..+++++.|.+.+|..+++..... .-+..++|+.|++++|+.+++. ....+ ..+++|+.|.+.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~--l~~~~~~L~~L~lsgC~rIT~~--GL~~L-~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLER--LGGLAPSLQDLDLSGCPRITDG--GLACL-LKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHH--hcccccchheeeccCCCeechh--HHHHH-HHhhhhHHHHhcCch
Confidence 4456666666666666665543110 0112345555555555555443 33333 444555555554433
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.23 E-value=0.062 Score=26.72 Aligned_cols=17 Identities=35% Similarity=0.685 Sum_probs=11.4
Q ss_pred ccceEEEecCCCCCccc
Q 044062 22 QRLRVFSLRGYRISELP 38 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~ 38 (567)
++|+.|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999988775
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.90 E-value=0.36 Score=26.97 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=11.3
Q ss_pred cccceeeccCCCcccccHH
Q 044062 45 RYLRHLNLSGTEIKTLPES 63 (567)
Q Consensus 45 ~~L~~L~L~~~~l~~lp~~ 63 (567)
++|+.|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666544
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.90 E-value=0.36 Score=26.97 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=11.3
Q ss_pred cccceeeccCCCcccccHH
Q 044062 45 RYLRHLNLSGTEIKTLPES 63 (567)
Q Consensus 45 ~~L~~L~L~~~~l~~lp~~ 63 (567)
++|+.|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666544
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.70 E-value=0.32 Score=27.25 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=13.6
Q ss_pred CCccEEEcccccccccc
Q 044062 522 SSLEILSIKHCCSLTYI 538 (567)
Q Consensus 522 ~~L~~L~l~~c~~l~~~ 538 (567)
++|+.|++++|+++++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 67888888888888754
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.30 E-value=0.57 Score=26.13 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=17.3
Q ss_pred cccceEEEecCCCCCccccc
Q 044062 21 LQRLRVFSLRGYRISELPDS 40 (567)
Q Consensus 21 l~~L~~L~L~~~~~~~l~~~ 40 (567)
+++|++|+|++|+++.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46899999999999999754
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.30 E-value=0.57 Score=26.13 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=17.3
Q ss_pred cccceEEEecCCCCCccccc
Q 044062 21 LQRLRVFSLRGYRISELPDS 40 (567)
Q Consensus 21 l~~L~~L~L~~~~~~~l~~~ 40 (567)
+++|++|+|++|+++.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46899999999999999754
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.65 E-value=1.7 Score=23.66 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=6.2
Q ss_pred cccceeeccCCCcc
Q 044062 45 RYLRHLNLSGTEIK 58 (567)
Q Consensus 45 ~~L~~L~L~~~~l~ 58 (567)
++|+.|+|++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 44555555555544
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.30 E-value=2.2 Score=23.84 Aligned_cols=17 Identities=41% Similarity=0.768 Sum_probs=10.6
Q ss_pred ccceeeccCCCcccccH
Q 044062 46 YLRHLNLSGTEIKTLPE 62 (567)
Q Consensus 46 ~L~~L~L~~~~l~~lp~ 62 (567)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666654
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.80 E-value=3.6 Score=23.09 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=8.7
Q ss_pred cccceeeccCCCcccc
Q 044062 45 RYLRHLNLSGTEIKTL 60 (567)
Q Consensus 45 ~~L~~L~L~~~~l~~l 60 (567)
.+|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4555666666555443
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.94 E-value=8.1 Score=21.98 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=9.6
Q ss_pred cccceeeccCCCcc
Q 044062 45 RYLRHLNLSGTEIK 58 (567)
Q Consensus 45 ~~L~~L~L~~~~l~ 58 (567)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777765
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=38.03 E-value=3.3 Score=42.81 Aligned_cols=118 Identities=22% Similarity=0.126 Sum_probs=73.5
Q ss_pred hhhhhhhhhhccccceEEEecCCCCC-----ccccccc----cccccceeeccCCCcccc-----cHHHHcccc-Cceee
Q 044062 10 LALSILPKLFKLQRLRVFSLRGYRIS-----ELPDSVG----DLRYLRHLNLSGTEIKTL-----PESVNKLYN-LHTLL 74 (567)
Q Consensus 10 ~~~~~~~~~~~l~~L~~L~L~~~~~~-----~l~~~~~----~l~~L~~L~L~~~~l~~l-----p~~~~~l~~-L~~L~ 74 (567)
....++..+.+...++.++++.|.+. .++..+. ...+++.|++++|.++.- -..+...+. ++.|+
T Consensus 160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~ 239 (478)
T KOG4308|consen 160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELD 239 (478)
T ss_pred chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHH
Confidence 33456667777788888998888763 1223333 477888899988877622 223455555 67788
Q ss_pred ccCccc----hhhcccccccc-cccceeeccCccccc----cccccccccccccccCceEec
Q 044062 75 LEDCDR----LEKLCADMGNL-TKLHHLNNSNTYSLE----EMPVGIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 75 L~~~~~----~~~l~~~~~~l-~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~~~~~~ 127 (567)
+..|.. ...+.+.+..+ ..++++++..|...+ .+...+..+..++.+.+..+.
T Consensus 240 l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 240 LASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 887732 22334445556 678888998883322 233345566677777665544
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=37.09 E-value=2.9 Score=43.18 Aligned_cols=125 Identities=20% Similarity=0.168 Sum_probs=70.2
Q ss_pred Cccccccchhhhhhhhhhcc-ccceEEEecCCCCC-----ccccccccccccceeeccCCCccc-----ccHHHH----c
Q 044062 2 LSNRLHGYLALSILPKLFKL-QRLRVFSLRGYRIS-----ELPDSVGDLRYLRHLNLSGTEIKT-----LPESVN----K 66 (567)
Q Consensus 2 ~~n~l~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~-----~l~~~~~~l~~L~~L~L~~~~l~~-----lp~~~~----~ 66 (567)
++|.+..-....+-..+... ..+++|++..|.++ .+...+.....++.+|++.|.+.. ++..+. .
T Consensus 123 ~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~ 202 (478)
T KOG4308|consen 123 SGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASP 202 (478)
T ss_pred ccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcc
Confidence 44555543333333344444 56777777777665 233455557888888888887642 233343 4
Q ss_pred cccCceeeccCccchh-----hcccccccccc-cceeeccCcccccc-----cccccccc-ccccccCceEecc
Q 044062 67 LYNLHTLLLEDCDRLE-----KLCADMGNLTK-LHHLNNSNTYSLEE-----MPVGIGKL-TCLQTLSNFVVGK 128 (567)
Q Consensus 67 l~~L~~L~L~~~~~~~-----~l~~~~~~l~~-L~~L~l~~~~~~~~-----lp~~~~~l-~~L~~L~~~~~~~ 128 (567)
..++++|.+.+| .++ .+-..+...+. ++.|++..| .+.. +.+.+..+ ..+++++...+..
T Consensus 203 ~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 203 LSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred cccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence 777888888887 322 11112344444 666888777 4442 22334455 5667776655543
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.87 E-value=26 Score=36.26 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=28.0
Q ss_pred cccccceeeccCCCcccc---cHHHHccccCceeeccCccchhhcccccccc--cccceeeccCc
Q 044062 43 DLRYLRHLNLSGTEIKTL---PESVNKLYNLHTLLLEDCDRLEKLCADMGNL--TKLHHLNNSNT 102 (567)
Q Consensus 43 ~l~~L~~L~L~~~~l~~l---p~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l--~~L~~L~l~~~ 102 (567)
+.+.+..++|++|++..+ ..--...++|..|+|++|.....-..++.++ ..|++|-+.||
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GN 280 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGN 280 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCC
Confidence 344455555666655543 1123345666666666652222112233333 34566666665
No 91
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=29.60 E-value=75 Score=20.26 Aligned_cols=31 Identities=35% Similarity=0.301 Sum_probs=13.5
Q ss_pred CCccEEEcccccccccccccCcccccCeEEEe
Q 044062 522 SSLEILSIKHCCSLTYIAEAQLPLSLKQLVIH 553 (567)
Q Consensus 522 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~~~ 553 (567)
+++++|.+.+.. =+.+..+.+++++++|.+.
T Consensus 12 ~~l~~L~~g~~f-n~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGSSF-NQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCCeEEEECCcc-CccCCCCccCCCceEEEee
Confidence 445555553221 1123334455555555553
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.39 E-value=34 Score=35.45 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=16.5
Q ss_pred cccceEEEecCCCCCccc--ccc-ccccccceeeccCC
Q 044062 21 LQRLRVFSLRGYRISELP--DSV-GDLRYLRHLNLSGT 55 (567)
Q Consensus 21 l~~L~~L~L~~~~~~~l~--~~~-~~l~~L~~L~L~~~ 55 (567)
.+.+..++|++|++..+. .++ ...++|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 334555555555544331 122 34455555555555
Done!