Query 044062
Match_columns 567
No_of_seqs 192 out of 2468
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 19:22:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.8E-38 1.3E-42 345.5 25.6 468 1-532 57-548 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.1E-38 1.1E-42 346.2 23.6 497 1-564 107-723 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-36 8.9E-41 327.9 32.9 509 13-556 18-620 (680)
4 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-36 3.9E-41 326.3 24.8 486 7-558 19-558 (606)
5 3t6q_A CD180 antigen; protein- 100.0 3.5E-36 1.2E-40 322.6 24.9 457 11-533 24-558 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 6.3E-36 2.1E-40 320.6 25.5 482 1-534 39-557 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-34 5.7E-39 313.7 35.2 479 25-563 7-601 (680)
8 3t6q_A CD180 antigen; protein- 100.0 1.2E-34 4.1E-39 310.6 26.6 473 1-509 40-560 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 6E-34 2E-38 301.6 26.8 465 9-534 15-509 (549)
10 2z63_A TOLL-like receptor 4, v 100.0 4E-33 1.4E-37 296.7 24.5 459 8-533 16-529 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-32 4.9E-37 304.4 29.5 287 215-533 266-558 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-32 7.6E-37 289.5 28.4 451 1-513 33-514 (549)
13 3j0a_A TOLL-like receptor 5; m 100.0 2.7E-32 9.3E-37 302.2 28.9 473 13-557 18-559 (844)
14 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-32 1.2E-36 285.8 22.0 116 1-127 7-126 (520)
15 2z63_A TOLL-like receptor 4, v 100.0 3.4E-32 1.2E-36 289.5 21.8 444 1-511 35-533 (570)
16 4eco_A Uncharacterized protein 100.0 2.3E-32 7.9E-37 292.9 20.0 392 54-559 192-633 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-31 7E-36 280.0 26.5 440 25-555 3-478 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 3.7E-31 1.3E-35 288.3 23.9 361 55-507 435-838 (876)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-30 4.3E-35 281.2 23.2 488 7-556 39-578 (635)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-29 9.7E-34 266.0 26.5 447 22-533 31-508 (562)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-28 5.8E-33 264.5 30.9 479 1-533 59-578 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 7.7E-29 2.6E-33 270.1 22.8 235 3-278 434-707 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-28 4.8E-33 260.7 23.9 441 1-508 38-509 (562)
24 4eco_A Uncharacterized protein 100.0 1.4E-28 4.8E-33 263.5 20.3 236 3-278 192-467 (636)
25 1jl5_A Outer protein YOPM; leu 100.0 1.5E-28 5.1E-33 251.9 18.6 402 20-533 9-427 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 1E-27 3.5E-32 245.7 22.4 396 43-560 9-431 (454)
27 1o6v_A Internalin A; bacterial 99.9 2.3E-26 7.9E-31 237.7 26.2 347 19-490 43-391 (466)
28 3bz5_A Internalin-J, INLJ; leu 99.9 4.4E-26 1.5E-30 233.8 23.4 228 14-327 34-262 (457)
29 1o6v_A Internalin A; bacterial 99.9 8.5E-26 2.9E-30 233.4 22.2 328 14-432 61-390 (466)
30 3v47_A TOLL-like receptor 5B a 99.9 1.9E-25 6.5E-30 230.5 19.6 110 383-507 294-406 (455)
31 3v47_A TOLL-like receptor 5B a 99.9 2.6E-25 8.7E-30 229.6 18.9 95 25-123 13-110 (455)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-25 5E-30 229.9 16.2 110 1-126 49-158 (457)
33 4fmz_A Internalin; leucine ric 99.9 2.6E-24 9E-29 213.7 18.7 302 17-399 39-344 (347)
34 4fmz_A Internalin; leucine ric 99.9 1.1E-23 3.6E-28 209.3 21.8 78 39-121 38-115 (347)
35 2id5_A Lingo-1, leucine rich r 99.9 1.1E-23 3.7E-28 218.6 21.6 106 13-122 25-134 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 6.3E-24 2.2E-28 214.4 15.8 104 18-123 65-172 (390)
37 2id5_A Lingo-1, leucine rich r 99.9 6.2E-23 2.1E-27 212.9 22.1 309 24-426 13-330 (477)
38 3o6n_A APL1; leucine-rich repe 99.9 1.8E-22 6.1E-27 203.7 24.1 78 43-122 43-123 (390)
39 3oja_B Anopheles plasmodium-re 99.9 5.3E-23 1.8E-27 219.0 16.1 284 13-351 65-356 (597)
40 3oja_B Anopheles plasmodium-re 99.9 1.5E-21 5E-26 207.9 24.4 302 43-484 49-356 (597)
41 4fcg_A Uncharacterized protein 99.9 3E-21 1E-25 189.3 16.8 93 21-114 80-172 (328)
42 3ogk_B Coronatine-insensitive 99.9 2.8E-23 9.7E-28 221.7 2.5 417 13-483 64-548 (592)
43 3ogk_B Coronatine-insensitive 99.9 3.5E-23 1.2E-27 221.1 2.7 294 39-368 67-411 (592)
44 1xku_A Decorin; proteoglycan, 99.9 1.1E-20 3.8E-25 186.0 19.5 243 22-311 31-276 (330)
45 4fcg_A Uncharacterized protein 99.8 3.6E-21 1.2E-25 188.8 12.3 210 7-276 89-309 (328)
46 2ft3_A Biglycan; proteoglycan, 99.8 1.8E-20 6.1E-25 184.6 16.2 242 22-311 33-277 (332)
47 2ft3_A Biglycan; proteoglycan, 99.8 5.4E-20 1.8E-24 181.2 15.1 277 9-330 43-331 (332)
48 1xku_A Decorin; proteoglycan, 99.8 6.3E-20 2.2E-24 180.5 15.5 275 11-329 43-329 (330)
49 1z7x_W Ribonuclease inhibitor; 99.8 5E-23 1.7E-27 212.8 -8.2 102 22-125 3-122 (461)
50 1ogq_A PGIP-2, polygalacturona 99.8 1.6E-20 5.6E-25 182.9 9.5 242 22-330 50-302 (313)
51 2z80_A TOLL-like receptor 2, v 99.8 4E-20 1.4E-24 183.8 11.7 259 10-311 42-314 (353)
52 2p1m_B Transport inhibitor res 99.8 4.7E-22 1.6E-26 212.4 -2.7 109 17-126 61-194 (594)
53 3zyj_A Leucine-rich repeat-con 99.8 2E-19 6.9E-24 184.2 13.2 229 13-308 57-290 (440)
54 3zyi_A Leucine-rich repeat-con 99.8 1.9E-19 6.4E-24 185.1 12.7 228 13-307 68-300 (452)
55 3g06_A SSPH2 (leucine-rich rep 99.8 1E-18 3.6E-23 184.3 18.2 82 19-110 37-118 (622)
56 2p1m_B Transport inhibitor res 99.8 1.4E-21 4.9E-26 208.6 -3.7 211 15-248 98-324 (594)
57 2z66_A Variable lymphocyte rec 99.8 6.5E-19 2.2E-23 171.4 15.3 106 13-122 21-132 (306)
58 1ogq_A PGIP-2, polygalacturona 99.8 2.8E-19 9.7E-24 174.1 11.0 239 2-279 58-302 (313)
59 3g06_A SSPH2 (leucine-rich rep 99.8 3E-18 1E-22 180.8 19.0 249 8-355 49-299 (622)
60 2z80_A TOLL-like receptor 2, v 99.8 9.3E-19 3.2E-23 173.9 11.3 105 18-126 27-134 (353)
61 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-19 4.4E-24 177.1 2.6 104 13-125 24-129 (317)
62 3zyi_A Leucine-rich repeat-con 99.8 2E-18 6.8E-23 177.5 11.3 214 1-279 82-301 (452)
63 1z7x_W Ribonuclease inhibitor; 99.8 4.2E-21 1.4E-25 198.3 -8.8 361 1-399 10-438 (461)
64 3zyj_A Leucine-rich repeat-con 99.8 2E-18 6.9E-23 176.8 11.2 214 1-279 71-290 (440)
65 2z66_A Variable lymphocyte rec 99.8 1.2E-18 4.1E-23 169.5 8.6 215 1-279 35-259 (306)
66 3o53_A Protein LRIM1, AGAP0063 99.7 2.4E-19 8.1E-24 175.2 2.9 240 1-316 41-281 (317)
67 1ozn_A Reticulon 4 receptor; N 99.7 3.6E-18 1.2E-22 164.2 10.9 95 25-122 14-111 (285)
68 1ozn_A Reticulon 4 receptor; N 99.7 2.8E-18 9.6E-23 165.0 5.4 210 9-279 21-236 (285)
69 1h6u_A Internalin H; cell adhe 99.7 4.1E-17 1.4E-21 158.4 12.8 192 17-248 36-227 (308)
70 1p9a_G Platelet glycoprotein I 99.7 8.1E-17 2.8E-21 154.7 13.3 176 17-248 5-182 (290)
71 1wwl_A Monocyte differentiatio 99.7 1E-17 3.5E-22 163.2 6.4 81 188-279 226-307 (312)
72 2z62_A TOLL-like receptor 4, v 99.7 3.6E-17 1.2E-21 156.4 9.4 211 11-249 19-235 (276)
73 3rfs_A Internalin B, repeat mo 99.7 1.1E-16 3.8E-21 152.5 12.5 101 18-122 37-139 (272)
74 1wwl_A Monocyte differentiatio 99.7 5.2E-18 1.8E-22 165.2 3.1 102 19-124 40-157 (312)
75 3oja_A Leucine-rich immune mol 99.7 1E-17 3.6E-22 173.1 4.9 245 13-306 21-271 (487)
76 3oja_A Leucine-rich immune mol 99.7 5.2E-17 1.8E-21 167.9 10.0 216 43-309 32-249 (487)
77 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.5E-21 151.9 11.9 196 23-279 17-216 (270)
78 2xwt_C Thyrotropin receptor; s 99.7 1.5E-16 5.2E-21 148.5 11.9 76 46-122 32-111 (239)
79 2o6q_A Variable lymphocyte rec 99.7 2.2E-16 7.4E-21 150.4 12.9 182 13-249 30-216 (270)
80 1p9a_G Platelet glycoprotein I 99.7 1.2E-16 4.2E-21 153.4 10.7 185 10-250 21-207 (290)
81 2xwt_C Thyrotropin receptor; s 99.7 9.2E-16 3.2E-20 143.2 13.9 86 23-109 32-121 (239)
82 2ast_B S-phase kinase-associat 99.6 1.7E-17 5.7E-22 163.7 0.9 202 22-278 70-282 (336)
83 4ay9_X Follicle-stimulating ho 99.6 5.2E-16 1.8E-20 153.6 11.3 101 25-127 12-115 (350)
84 1h6u_A Internalin H; cell adhe 99.6 8.4E-16 2.9E-20 149.1 11.3 182 2-228 49-230 (308)
85 2z62_A TOLL-like receptor 4, v 99.6 6.4E-16 2.2E-20 147.7 10.2 195 1-229 35-238 (276)
86 2ca6_A RAN GTPase-activating p 99.6 1.5E-17 5.2E-22 167.3 -1.6 254 1-311 11-316 (386)
87 4ay9_X Follicle-stimulating ho 99.6 2.9E-15 1E-19 148.2 14.9 98 10-110 20-121 (350)
88 3rfs_A Internalin B, repeat mo 99.6 4.4E-15 1.5E-19 141.4 12.9 105 15-122 56-163 (272)
89 1h6t_A Internalin B; cell adhe 99.6 4E-15 1.4E-19 143.0 12.5 170 18-249 42-211 (291)
90 2ast_B S-phase kinase-associat 99.6 6.8E-17 2.3E-21 159.3 -4.4 60 294-354 244-307 (336)
91 1m9s_A Internalin B; cell inva 99.5 1.1E-14 3.7E-19 153.6 10.7 170 18-249 39-208 (605)
92 3goz_A Leucine-rich repeat-con 99.5 1.5E-15 5.3E-20 151.0 3.5 257 1-312 5-298 (362)
93 3m19_A Variable lymphocyte rec 99.5 2.4E-14 8.1E-19 134.6 11.4 172 22-249 14-190 (251)
94 3m19_A Variable lymphocyte rec 99.5 1.4E-14 4.7E-19 136.2 9.6 168 8-230 23-194 (251)
95 4glp_A Monocyte differentiatio 99.5 1.1E-14 3.8E-19 141.5 8.7 198 21-279 90-305 (310)
96 2ca6_A RAN GTPase-activating p 99.5 9.6E-16 3.3E-20 154.0 1.2 124 1-126 39-197 (386)
97 1xeu_A Internalin C; cellular 99.5 2E-14 6.9E-19 135.8 6.9 167 20-249 17-183 (263)
98 1h6t_A Internalin B; cell adhe 99.5 8.4E-14 2.9E-18 133.7 10.6 114 1-126 53-166 (291)
99 4glp_A Monocyte differentiatio 99.5 2.3E-14 7.8E-19 139.3 5.1 192 1-249 98-305 (310)
100 2ell_A Acidic leucine-rich nuc 99.5 1.5E-13 5.1E-18 120.5 9.3 120 1-127 31-158 (168)
101 4ezg_A Putative uncharacterize 99.5 1.2E-13 4.2E-18 124.5 8.7 81 19-102 41-122 (197)
102 1m9s_A Internalin B; cell inva 99.4 6.3E-14 2.2E-18 147.7 7.1 189 21-279 20-208 (605)
103 2je0_A Acidic leucine-rich nuc 99.4 1.1E-13 3.6E-18 118.8 7.2 114 2-122 25-146 (149)
104 1xeu_A Internalin C; cellular 99.4 1.4E-13 4.8E-18 130.0 8.3 105 14-126 34-138 (263)
105 3cvr_A Invasion plasmid antige 99.4 3.2E-13 1.1E-17 140.7 11.1 91 23-126 60-150 (571)
106 3goz_A Leucine-rich repeat-con 99.4 2.7E-14 9.3E-19 142.0 2.1 81 26-108 2-95 (362)
107 3e6j_A Variable lymphocyte rec 99.4 2.5E-13 8.4E-18 125.6 7.5 113 11-127 31-146 (229)
108 2o6s_A Variable lymphocyte rec 99.4 1.1E-13 3.8E-18 126.0 4.4 99 22-122 28-130 (208)
109 4ezg_A Putative uncharacterize 99.4 3.8E-13 1.3E-17 121.3 7.8 134 12-165 57-191 (197)
110 3cvr_A Invasion plasmid antige 99.4 3.9E-13 1.3E-17 140.1 8.6 173 1-253 66-245 (571)
111 2v9t_B SLIT homolog 2 protein 99.4 3.5E-13 1.2E-17 123.6 6.9 111 12-126 24-138 (220)
112 3e6j_A Variable lymphocyte rec 99.4 3.9E-13 1.3E-17 124.2 6.4 120 1-126 47-169 (229)
113 2v9t_B SLIT homolog 2 protein 99.4 5.5E-13 1.9E-17 122.3 6.8 120 1-127 39-163 (220)
114 1dce_A Protein (RAB geranylger 99.3 5.8E-14 2E-18 147.1 -1.4 175 18-249 345-544 (567)
115 2v70_A SLIT-2, SLIT homolog 2 99.3 9.8E-13 3.3E-17 120.6 6.9 109 14-126 26-139 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.3 1.4E-12 5E-17 119.5 7.3 120 1-126 39-163 (220)
117 2xot_A Amphoterin-induced prot 99.3 9.8E-13 3.4E-17 130.5 6.4 172 25-250 21-201 (361)
118 1a9n_A U2A', U2A'; complex (nu 99.3 1.9E-12 6.4E-17 114.3 7.2 107 17-127 14-124 (176)
119 2wfh_A SLIT homolog 2 protein 99.3 1.7E-12 5.8E-17 116.3 6.8 114 10-127 21-137 (193)
120 2o6s_A Variable lymphocyte rec 99.3 3.4E-12 1.2E-16 116.1 7.6 119 1-126 35-158 (208)
121 4b8c_D Glucose-repressible alc 99.3 3.1E-12 1.1E-16 138.3 7.6 116 10-127 212-327 (727)
122 1dce_A Protein (RAB geranylger 99.3 5.1E-12 1.7E-16 132.3 8.9 102 23-128 442-545 (567)
123 2ell_A Acidic leucine-rich nuc 99.3 2.4E-12 8.3E-17 112.7 5.3 130 19-165 21-157 (168)
124 2xot_A Amphoterin-induced prot 99.3 1.9E-12 6.7E-17 128.4 5.2 164 13-228 32-202 (361)
125 1w8a_A SLIT protein; signaling 99.3 4.3E-12 1.5E-16 113.7 6.7 117 2-127 16-137 (192)
126 2je0_A Acidic leucine-rich nuc 99.3 1.3E-12 4.4E-17 111.9 3.0 108 19-129 14-126 (149)
127 1ds9_A Outer arm dynein; leuci 99.2 4.8E-13 1.6E-17 120.7 -2.4 121 2-126 26-150 (198)
128 1a9n_A U2A', U2A'; complex (nu 99.2 1.9E-11 6.5E-16 107.8 5.2 117 1-126 26-150 (176)
129 2r9u_A Variable lymphocyte rec 99.2 2.4E-11 8.3E-16 106.7 5.8 96 25-124 15-113 (174)
130 2o6r_A Variable lymphocyte rec 99.2 4.2E-11 1.4E-15 105.7 7.2 111 13-127 21-135 (177)
131 3sb4_A Hypothetical leucine ri 99.1 1.4E-10 4.8E-15 113.4 10.3 216 67-325 100-327 (329)
132 2wfh_A SLIT homolog 2 protein 99.1 9.7E-11 3.3E-15 104.8 7.6 96 1-102 38-136 (193)
133 4b8c_D Glucose-repressible alc 99.1 4.2E-11 1.4E-15 129.5 5.8 105 8-114 233-338 (727)
134 3g39_A Variable lymphocyte rec 99.1 6.8E-11 2.3E-15 103.4 5.9 96 25-124 12-110 (170)
135 1ds9_A Outer arm dynein; leuci 99.1 4.7E-12 1.6E-16 114.1 -1.8 113 1-122 55-180 (198)
136 1w8a_A SLIT protein; signaling 99.1 1.2E-10 4.1E-15 104.2 6.4 96 1-102 36-136 (192)
137 2r9u_A Variable lymphocyte rec 99.0 1.8E-10 6.2E-15 101.1 6.4 102 11-116 24-128 (174)
138 3g39_A Variable lymphocyte rec 99.0 2.5E-10 8.5E-15 99.8 6.1 97 2-107 17-116 (170)
139 2o6r_A Variable lymphocyte rec 99.0 3.6E-10 1.2E-14 99.7 7.1 99 1-106 35-137 (177)
140 4fs7_A Uncharacterized protein 99.0 2.5E-08 8.7E-13 99.9 19.6 81 385-482 294-375 (394)
141 3sb4_A Hypothetical leucine ri 98.9 2.4E-08 8.1E-13 97.5 16.6 98 388-502 226-327 (329)
142 2ifg_A High affinity nerve gro 98.8 7E-09 2.4E-13 102.2 7.4 86 14-102 24-113 (347)
143 4fdw_A Leucine rich hypothetic 98.8 4.5E-07 1.6E-11 90.5 20.1 94 22-122 113-209 (401)
144 4fdw_A Leucine rich hypothetic 98.7 3.6E-06 1.2E-10 84.0 23.6 123 388-531 248-379 (401)
145 2ifg_A High affinity nerve gro 98.7 1.5E-08 5.2E-13 99.7 5.7 99 26-127 12-114 (347)
146 4fs7_A Uncharacterized protein 98.6 3.5E-06 1.2E-10 84.2 21.9 74 449-530 297-374 (394)
147 3e4g_A ATP synthase subunit S, 98.5 1.2E-07 4E-12 81.6 5.5 94 388-489 61-155 (176)
148 4gt6_A Cell surface protein; l 98.4 4.9E-06 1.7E-10 83.2 17.0 106 12-122 52-166 (394)
149 3un9_A NLR family member X1; l 98.4 4.9E-08 1.7E-12 96.5 0.3 125 1-127 79-222 (372)
150 3e4g_A ATP synthase subunit S, 98.2 4.1E-07 1.4E-11 78.2 3.0 67 386-463 83-153 (176)
151 3un9_A NLR family member X1; l 98.2 6.2E-07 2.1E-11 88.6 3.2 122 1-127 108-250 (372)
152 1io0_A Tropomodulin; LRR prote 98.1 1.2E-06 4.1E-11 77.3 4.1 113 13-127 27-162 (185)
153 4gt6_A Cell surface protein; l 98.1 0.00041 1.4E-08 69.1 22.4 101 413-531 262-366 (394)
154 1io0_A Tropomodulin; LRR prote 98.1 1.8E-06 6.2E-11 76.1 3.8 81 41-123 32-128 (185)
155 3rw6_A Nuclear RNA export fact 98.0 6.4E-06 2.2E-10 76.5 5.5 103 18-122 137-257 (267)
156 2ra8_A Uncharacterized protein 97.9 7.8E-06 2.7E-10 80.1 5.4 63 267-330 138-204 (362)
157 2ra8_A Uncharacterized protein 97.9 6.4E-06 2.2E-10 80.7 4.4 13 294-306 136-148 (362)
158 3rw6_A Nuclear RNA export fact 97.8 4.3E-06 1.5E-10 77.6 1.3 79 19-98 167-257 (267)
159 4h09_A Hypothetical leucine ri 97.8 0.0037 1.3E-07 61.7 22.4 281 213-542 44-351 (379)
160 4h09_A Hypothetical leucine ri 97.6 0.0019 6.3E-08 63.9 17.2 79 18-102 42-123 (379)
161 3rfe_A Platelet glycoprotein I 96.0 0.0075 2.6E-07 49.1 4.9 51 26-78 12-65 (130)
162 3rfe_A Platelet glycoprotein I 95.8 0.0069 2.4E-07 49.3 4.0 44 13-58 24-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0089 3.1E-07 52.2 4.7 106 18-124 37-165 (197)
164 1pgv_A TMD-1, tropomodulin TMD 94.0 0.07 2.4E-06 46.5 5.4 82 41-124 37-134 (197)
165 2lz0_A Uncharacterized protein 27.1 91 0.0031 23.2 4.8 39 382-425 14-52 (100)
166 2lz0_A Uncharacterized protein 23.1 58 0.002 24.3 2.9 37 39-76 14-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-38 Score=345.48 Aligned_cols=468 Identities=16% Similarity=0.096 Sum_probs=266.1
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcc-cccH--HHHccccCceeeccC
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIK-TLPE--SVNKLYNLHTLLLED 77 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~-~lp~--~~~~l~~L~~L~L~~ 77 (567)
|+++++.|. ...+|+.+.++++|+.++++.+.+..+|+.+..+++|++|+|++|.+. .+|. .++.+++|++|++++
T Consensus 57 L~~~~l~g~-~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~ 135 (768)
T 3rgz_A 57 LSSKPLNVG-FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135 (768)
T ss_dssp CTTSCCCEE-HHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCS
T ss_pred CCCCCcCCc-cCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcC
Confidence 466777771 112788899999999999999988777788999999999999999988 5677 899999999999999
Q ss_pred ccchhhccccc-ccccccceeeccCccccccc-ccc---ccccccccccCceEeccCCCCCccccccccccccceeeccc
Q 044062 78 CDRLEKLCADM-GNLTKLHHLNNSNTYSLEEM-PVG---IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKL 152 (567)
Q Consensus 78 ~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~l-p~~---~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 152 (567)
|.....+|..+ +++++|++|++++| .+... |.. +.++++|+.|++..+....... ...++
T Consensus 136 n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~----------- 200 (768)
T 3rgz_A 136 NTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCV----------- 200 (768)
T ss_dssp SEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCT-----------
T ss_pred CccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCC-----------
Confidence 95445556554 88999999999999 55544 334 7888999999876554322211 23444
Q ss_pred ccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCC-CcccccCCCCCccceEEEecCCCcccC
Q 044062 153 ENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTK-FPTWLGDSSFSNLVTLKFEDCGMCTVL 231 (567)
Q Consensus 153 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~ 231 (567)
+|+.|++++|.... ..+.+..+++|++|++.++.... ++..+. .+++|+.|++++|.+.+..
T Consensus 201 ---~L~~L~Ls~n~l~~------------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~ 263 (768)
T 3rgz_A 201 ---NLEFLDVSSNNFST------------GIPFLGDCSALQHLDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPI 263 (768)
T ss_dssp ---TCCEEECCSSCCCS------------CCCBCTTCCSCCEEECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESC
T ss_pred ---cCCEEECcCCcCCC------------CCcccccCCCCCEEECcCCcCCCcccHHHh--cCCCCCEEECCCCcccCcc
Confidence 67777776642211 12225666777777777776653 344444 5777777777777766555
Q ss_pred CCCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcc
Q 044062 232 PSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQ 311 (567)
Q Consensus 232 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 311 (567)
+.. .+++|++|++++|.....++..+... +++|++|+++++... . ..+..+..+++|++|++++| .+.
T Consensus 264 ~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~-----~~~L~~L~Ls~n~l~-~----~~p~~~~~l~~L~~L~L~~n-~l~ 331 (768)
T 3rgz_A 264 PPL-PLKSLQYLSLAENKFTGEIPDFLSGA-----CDTLTGLDLSGNHFY-G----AVPPFFGSCSLLESLALSSN-NFS 331 (768)
T ss_dssp CCC-CCTTCCEEECCSSEEEESCCCCSCTT-----CTTCSEEECCSSEEE-E----CCCGGGGGCTTCCEEECCSS-EEE
T ss_pred Ccc-ccCCCCEEECcCCccCCccCHHHHhh-----cCcCCEEECcCCcCC-C----ccchHHhcCCCccEEECCCC-ccc
Confidence 544 66777777777765443444433221 467777777665321 1 11222355666666666663 444
Q ss_pred cCCC----CCCCcccEEEEecchh---hhhhcCCCC-CcceEEecCCCCccc----ccc--CCCCCcccccccCCCcccc
Q 044062 312 GTFP----EHLPALQMLVIQECKE---LLVSITSLP-ALCKLEIDGCKKVVW----RSA--TDHLGSQNSVVCRDTSNQV 377 (567)
Q Consensus 312 ~~~~----~~l~~L~~L~i~~~~~---l~~~~~~~~-~L~~L~l~~~~~~~~----~~~--l~~L~~L~l~~~~~~~~~~ 377 (567)
+.+| ..+++|++|++++|.. +...+..++ +|++|++++|..... ... +++|+.|++++|...+..+
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 3444 2356666666666642 122222333 556666655544322 111 4455555555554443332
Q ss_pred ccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEcc
Q 044062 378 FLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLR 457 (567)
Q Consensus 378 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 457 (567)
..+..+++|+.|++++|. +... ....+ ..+++|++|++++|. ++......+ ..+ ++|++|+++
T Consensus 412 ----~~l~~l~~L~~L~Ls~N~-l~~~--~p~~l-~~l~~L~~L~L~~n~-l~~~~p~~~----~~l----~~L~~L~L~ 474 (768)
T 3rgz_A 412 ----PTLSNCSELVSLHLSFNY-LSGT--IPSSL-GSLSKLRDLKLWLNM-LEGEIPQEL----MYV----KTLETLILD 474 (768)
T ss_dssp ----GGGGGCTTCCEEECCSSE-EESC--CCGGG-GGCTTCCEEECCSSC-CCSCCCGGG----GGC----TTCCEEECC
T ss_pred ----HHHhcCCCCCEEECcCCc-ccCc--ccHHH-hcCCCCCEEECCCCc-ccCcCCHHH----cCC----CCceEEEec
Confidence 334445555555555554 2222 12222 444555555555532 221111111 222 455555555
Q ss_pred CCCCCcccccCCCCCCCccEEEEccCCCCcccCCc-CCCCCccEEEEccCccccccccccccCCCCCccEEEcccc
Q 044062 458 SCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEV-ALPSKLRKIRISSCDALKSLPEAWMCDTNSSLEILSIKHC 532 (567)
Q Consensus 458 ~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~~~L~~L~l~~c 532 (567)
+|.....+|..+..+++|++|++++|.....+|.. +.+++|+.|++++|.....+|..+..+ ++|++|++++|
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~Ls~N 548 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTN 548 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC--TTCCEEECCSS
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC--CCCCEEECCCC
Confidence 54433344444555555555555554322233322 124455555554443333444444444 45555555544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-38 Score=346.22 Aligned_cols=497 Identities=16% Similarity=0.078 Sum_probs=250.1
Q ss_pred CCccccccchhhhhhh--hhhccccceEEEecCCCCC-cccccc-ccccccceeeccCCCcccc-cHH---HHccccCce
Q 044062 1 MLSNRLHGYLALSILP--KLFKLQRLRVFSLRGYRIS-ELPDSV-GDLRYLRHLNLSGTEIKTL-PES---VNKLYNLHT 72 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~-~l~~~~-~~l~~L~~L~L~~~~l~~l-p~~---~~~l~~L~~ 72 (567)
||+|.++| .+|. .+.++++|++|++++|.+. .+|..+ ..+++|++|++++|.++.. |.. +.++++|++
T Consensus 107 Ls~n~l~~----~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~ 182 (768)
T 3rgz_A 107 LSRNSLSG----PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182 (768)
T ss_dssp CCSSEEEE----EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCE
T ss_pred CCCCcCCC----cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCE
Confidence 34555555 4444 5555556666666655544 223322 4555566666666555533 222 455556666
Q ss_pred eeccCccchhhcccccccccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeeccc
Q 044062 73 LLLEDCDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKL 152 (567)
Q Consensus 73 L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 152 (567)
|++++|. +.... .++.+++|++|++++| .+...++.+.++++|++|++..+... ...+..+..++
T Consensus 183 L~Ls~n~-l~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~----------- 247 (768)
T 3rgz_A 183 LAISGNK-ISGDV-DVSRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLS-GDFSRAISTCT----------- 247 (768)
T ss_dssp EECCSSE-EESCC-BCTTCTTCCEEECCSS-CCCSCCCBCTTCCSCCEEECCSSCCC-SCHHHHTTTCS-----------
T ss_pred EECCCCc-ccccC-CcccCCcCCEEECcCC-cCCCCCcccccCCCCCEEECcCCcCC-CcccHHHhcCC-----------
Confidence 6666552 22221 1355666666666666 33332223666666666655443321 11122333333
Q ss_pred ccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCC-CCcccccCCCCCccceEEEecCCCcccC
Q 044062 153 ENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGT-KFPTWLGDSSFSNLVTLKFEDCGMCTVL 231 (567)
Q Consensus 153 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 231 (567)
+|+.|++++|.... ..+.. .+++|++|++.++... .+|..+.. .+++|+.|++++|.+.+..
T Consensus 248 ---~L~~L~Ls~n~l~~------------~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 248 ---ELKLLNISSNQFVG------------PIPPL-PLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp ---SCCEEECCSSCCEE------------SCCCC-CCTTCCEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECC
T ss_pred ---CCCEEECCCCcccC------------ccCcc-ccCCCCEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCcc
Confidence 55566655431110 00011 3455566655555443 34444331 2355666666666554444
Q ss_pred C-CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccC---------------
Q 044062 232 P-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVER--------------- 295 (567)
Q Consensus 232 ~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~--------------- 295 (567)
| .++.+++|++|++++|.....++...+.. +++|++|+++++... . .++..+..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~-----l~~L~~L~Ls~n~l~-~----~~p~~l~~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLK-----MRGLKVLDLSFNEFS-G----ELPESLTNLSASLLTLDLSSNNF 380 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTT-----CTTCCEEECCSSEEE-E----CCCTTHHHHTTTCSEEECCSSEE
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhc-----CCCCCEEeCcCCccC-c----cccHHHHhhhcCCcEEEccCCCc
Confidence 4 34555666666666554333444332222 555555555554211 0 01111122
Q ss_pred ------------CCCccEEEEcCCCCcccCCCC---CCCcccEEEEecchh---hhhhcCCCCCcceEEecCCCCccc--
Q 044062 296 ------------FPKLRELDILRCSKLQGTFPE---HLPALQMLVIQECKE---LLVSITSLPALCKLEIDGCKKVVW-- 355 (567)
Q Consensus 296 ------------~~~L~~L~l~~c~~l~~~~~~---~l~~L~~L~i~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~-- 355 (567)
+++|++|++++| .+.+.+|. .+++|++|++++|.. ....+..+++|+.|++++|.....
T Consensus 381 ~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 381 SGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CCCcChhhhhcccCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 344555555553 33333332 245555555555531 233444555666666666554422
Q ss_pred --cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccc
Q 044062 356 --RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLV 433 (567)
Q Consensus 356 --~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 433 (567)
...+++|+.|++++|......+ ..+..+++|+.|++++|. +... ....+ ..+++|++|++++|.....++
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~L~~N~-l~~~--~p~~~-~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIP----SGLSNCTNLNWISLSNNR-LTGE--IPKWI-GRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCC----GGGGGCTTCCEEECCSSC-CCSC--CCGGG-GGCTTCCEEECCSSCCEEECC
T ss_pred HHHcCCCCceEEEecCCcccCcCC----HHHhcCCCCCEEEccCCc-cCCc--CChHH-hcCCCCCEEECCCCcccCcCC
Confidence 3445566666666665554443 345556666666666665 3322 22233 556667777776643322333
Q ss_pred hhhhhHHHhhhhhccCceeEEEccCCCCCccccc----------------------------------------------
Q 044062 434 AEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQ---------------------------------------------- 467 (567)
Q Consensus 434 ~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~---------------------------------------------- 467 (567)
. .+ ..+ ++|+.|++++|.....+|.
T Consensus 532 ~-~l----~~l----~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 532 A-EL----GDC----RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp G-GG----GGC----TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred H-HH----cCC----CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 2 22 333 6677777776542222222
Q ss_pred ------------------------CCCCCCCccEEEEccCCCCcccCCc-CCCCCccEEEEccCccccccccccccCCCC
Q 044062 468 ------------------------SSLGLNSLRDIEIYKCSSLVSFPEV-ALPSKLRKIRISSCDALKSLPEAWMCDTNS 522 (567)
Q Consensus 468 ------------------------~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~~ 522 (567)
.+..+++|+.|++++|.....+|.. +.+++|+.|++++|..-..+|..+..+ +
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L--~ 680 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL--R 680 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC--T
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC--C
Confidence 2233456667777765333344432 236777777776655444677777777 7
Q ss_pred CccEEEcccccccccccccCcc--cccCeEEEeeCCCCCccCcc
Q 044062 523 SLEILSIKHCCSLTYIAEAQLP--LSLKQLVIHNCDNMRTLTVE 564 (567)
Q Consensus 523 ~L~~L~l~~c~~l~~~~~~~~~--~~L~~l~~~~c~~l~~l~~~ 564 (567)
+|++|+++++.--..+|. .+. ++|++|++++|+--..+|..
T Consensus 681 ~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp TCCEEECCSSCCEECCCG-GGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CCCEEECCCCcccCcCCh-HHhCCCCCCEEECcCCcccccCCCc
Confidence 788888887643334443 222 77888888877665666654
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.6e-36 Score=327.91 Aligned_cols=509 Identities=17% Similarity=0.143 Sum_probs=262.8
Q ss_pred hhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhcccc-cc
Q 044062 13 SILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCAD-MG 89 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~-~~ 89 (567)
.+|..++ +++++|++++|.++.++ .+|..+++|++|++++|.++.+ |..++.+++|++|++++| .+..+|.. |+
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 94 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFA 94 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhc
Confidence 3555554 56666666666666554 3466666666666666666654 455666666666666666 55556553 66
Q ss_pred cccccceeeccCcccccccc-ccccccccccccCceEeccCCC--CCccccccccccccc-eeecc--------cccccc
Q 044062 90 NLTKLHHLNNSNTYSLEEMP-VGIGKLTCLQTLSNFVVGKDSG--LRLPELKLLMHLRGT-LEISK--------LENENL 157 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~~~~~~~~~~--~~~~~l~~l~~l~~~-~~~~~--------~~~~~L 157 (567)
++++|++|++++| .+..++ ..+.++++|++|++..+..... ..+..+.+|+.+.-. ..+.. ....+|
T Consensus 95 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred cCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 6666666666666 455554 3366666666666544432111 111122222222100 01110 111467
Q ss_pred cceEEEeeecCCCCCCccchhhhh-------------------hhccCCCCCCCcEEEEeecCCCCC-cccccCCCCCcc
Q 044062 158 RELLLRWTCSTDGSSSREAETEMG-------------------VLDMLKPHKNLEQFGICGYGGTKF-PTWLGDSSFSNL 217 (567)
Q Consensus 158 ~~l~l~~~~~~~~~~~~~~~~~~~-------------------~l~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L 217 (567)
+.|++++|.... ..+.. ..... ....+ ..++|+.|++.++..... +.++.....++|
T Consensus 174 ~~L~L~~n~l~~-~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 174 KKLELSSNQIKE-FSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp SEEECTTCCCCC-BCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred cEEECCCCcccc-cChhh-hhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCC
Confidence 777776642221 11110 00000 00000 125677777777765544 233331112348
Q ss_pred ceEEEecCCCcccCC-CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCC----c
Q 044062 218 VTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSE----G 292 (567)
Q Consensus 218 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~ 292 (567)
+.|++++|.+....+ .++.+++|++|++++|......+..+. .+++|+.|+++++..........++. .
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH------GLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT------TCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc------CCCCccEEeccchhhhcccccccccccChhh
Confidence 888888887666554 467778888888887754333332222 26777777776532111100000010 1
Q ss_pred ccCCCCccEEEEcCCCCcccCCC---CCCCcccEEEEecch----------------------------hh---hhhcCC
Q 044062 293 VERFPKLRELDILRCSKLQGTFP---EHLPALQMLVIQECK----------------------------EL---LVSITS 338 (567)
Q Consensus 293 ~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~i~~~~----------------------------~l---~~~~~~ 338 (567)
+..+++|++|+++++ .+.+..+ ..+++|++|++++|. .. ...+..
T Consensus 325 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred cccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 245566666666663 4443322 234556666665543 11 123334
Q ss_pred CCCcceEEecCCCCccc-----cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCcccc
Q 044062 339 LPALCKLEIDGCKKVVW-----RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQ 413 (567)
Q Consensus 339 ~~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 413 (567)
+++|+.|++++|..... ...+++|+.|++++|......+ ..+..+++|+.|+++++. +..+-.....+ .
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~-~ 477 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR----NSFALVPSLQRLMLRRVA-LKNVDSSPSPF-Q 477 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT----TTTTTCTTCCEEECTTSC-CBCTTCSSCTT-T
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh----hhhhcCcccccchhcccc-ccccccCCccc-c
Confidence 55555555555554321 3344555555555554322222 334455666666666554 21110012223 5
Q ss_pred CCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCccccc---------CCCCCCCccEEEEccCC
Q 044062 414 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQ---------SSLGLNSLRDIEIYKCS 484 (567)
Q Consensus 414 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~---------~~~~~~~L~~L~l~~c~ 484 (567)
.+++|++|++++ +.++.++...+ .++ ++|++|+++++. ++.++. .+..+++|++|++++|
T Consensus 478 ~l~~L~~L~Ls~-N~l~~i~~~~~----~~l----~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N- 546 (680)
T 1ziw_A 478 PLRNLTILDLSN-NNIANINDDML----EGL----EKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN- 546 (680)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTT----TTC----TTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-
T ss_pred cCCCCCEEECCC-CCCCcCChhhh----ccc----cccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-
Confidence 666777777766 45555555444 344 677777777755 443321 2456677777777764
Q ss_pred CCcccCCcC--CCCCccEEEEccCccccccccc-cccCCCCCccEEEcccccccccccccCcc---cccCeEEEeeCC
Q 044062 485 SLVSFPEVA--LPSKLRKIRISSCDALKSLPEA-WMCDTNSSLEILSIKHCCSLTYIAEAQLP---LSLKQLVIHNCD 556 (567)
Q Consensus 485 ~l~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~-~~~l~~~~L~~L~l~~c~~l~~~~~~~~~---~~L~~l~~~~c~ 556 (567)
.++.++... .+++|+.|++++ +.++.+|+. +..+ ++|++|+++++ +++.++...+. ++|++++++++|
T Consensus 547 ~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l--~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 547 GFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQ--VSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTC--TTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CCCCCCHHHcccccCcceeECCC-CCCCcCCHhHhCCC--CCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 556665432 256777777744 456666653 3455 67777777764 56666544331 677777776644
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-36 Score=326.34 Aligned_cols=486 Identities=16% Similarity=0.106 Sum_probs=309.6
Q ss_pred ccchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhc
Q 044062 7 HGYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKL 84 (567)
Q Consensus 7 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l 84 (567)
+++.+..+|..++ +++++|++++|.++.++ .+|.++++|++|++++|.++.+ |..|.++++||+|++++| .+..+
T Consensus 19 ~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~ 95 (606)
T 3vq2_A 19 MDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSF 95 (606)
T ss_dssp TTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCC
T ss_pred cCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-ccccc
Confidence 3334445777665 68888888888888775 4778888888888888888877 556888888888888888 56655
Q ss_pred -ccccccccccceeeccCcccccccc-ccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEE
Q 044062 85 -CADMGNLTKLHHLNNSNTYSLEEMP-VGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLL 162 (567)
Q Consensus 85 -~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l 162 (567)
|..|+++++|++|++++| .+..++ ..++++++|++|++..+.......+..+++++ +|++|++
T Consensus 96 ~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~--------------~L~~L~L 160 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT--------------NLVHVDL 160 (606)
T ss_dssp CTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT--------------TCCEEEC
T ss_pred ChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC--------------CCCEEEc
Confidence 666888888888888888 666666 55888888888877666543333345566666 7777777
Q ss_pred EeeecCCCCCCccchhhhhhhccCCCCCC-CcEEEEeecCCCCCcccccCCCCCccceEEEecCCCccc-CC-CCCCCCC
Q 044062 163 RWTCSTDGSSSREAETEMGVLDMLKPHKN-LEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTV-LP-SVGQLPS 239 (567)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~-~~~~l~~ 239 (567)
++|.... ..+. .+..+..++. +..+++.++....++.... ...+|+.|++++|...+. .+ .+..++.
T Consensus 161 s~n~l~~-~~~~-------~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 230 (606)
T 3vq2_A 161 SYNYIQT-ITVN-------DLQFLRENPQVNLSLDMSLNPIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAG 230 (606)
T ss_dssp CSSCCCE-ECTT-------TTHHHHHCTTCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred cCCccee-cChh-------hhhhhhccccccceeeccCCCcceeCcccc--cCceeeeeeccCCccchhHHHHHhccccc
Confidence 6642211 0000 0111111111 4466776666665555443 233677777777654321 11 1233333
Q ss_pred CcEEEE--------------------------------eCCcceeeecccccCCCCCCCCCCcceeeecccccccccccC
Q 044062 240 LKHLTV--------------------------------RGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPH 287 (567)
Q Consensus 240 L~~L~l--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 287 (567)
|+.+++ ..+..+...... ...+++|+.|++.++.. ....
T Consensus 231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~------~~~l~~L~~L~l~~~~~-~~l~-- 301 (606)
T 3vq2_A 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK------FHCLANVSAMSLAGVSI-KYLE-- 301 (606)
T ss_dssp CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS------CGGGTTCSEEEEESCCC-CCCC--
T ss_pred cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc------cccCCCCCEEEecCccc-hhhh--
Confidence 333333 222222222111 22267888888877642 2221
Q ss_pred CCCCcccCCCCccEEEEcCCCCcccCCCC-CCCcccEEEEecchhh-hhhcCCCCCcceEEecCCCCccc------cccC
Q 044062 288 GSSEGVERFPKLRELDILRCSKLQGTFPE-HLPALQMLVIQECKEL-LVSITSLPALCKLEIDGCKKVVW------RSAT 359 (567)
Q Consensus 288 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~l~~L~~L~i~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~------~~~l 359 (567)
.+..+++|++|++++|. +. .+|. .+++|++|++++|... ...+..+++|++|++++|..... ...+
T Consensus 302 ----~l~~~~~L~~L~l~~n~-l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 302 ----DVPKHFKWQSLSIIRCQ-LK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp ----CCCTTCCCSEEEEESCC-CS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred ----hccccccCCEEEccccc-Cc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 23567788888888864 33 4553 5778888888888432 23455678888888888875432 4567
Q ss_pred CCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCcccccccc-CccccCCCCccEEEEcCCCCccccchhhhh
Q 044062 360 DHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSH-NGLLQDICSLKRLTIDSCPKLQSLVAEEEK 438 (567)
Q Consensus 360 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 438 (567)
++|+.|++++|.... .+ ..+..+++|+.|+++++. +... .. ..+ ..+++|++|++++| .++......+
T Consensus 376 ~~L~~L~L~~n~l~~-~~----~~~~~l~~L~~L~l~~n~-l~~~--~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~- 444 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MS----ANFMGLEELQHLDFQHST-LKRV--TEFSAF-LSLEKLLYLDISYT-NTKIDFDGIF- 444 (606)
T ss_dssp SCCCEEECCSCSEEE-EC----CCCTTCTTCCEEECTTSE-EEST--TTTTTT-TTCTTCCEEECTTS-CCEECCTTTT-
T ss_pred CcccEeECCCCcccc-ch----hhccCCCCCCeeECCCCc-cCCc--cChhhh-hccccCCEEECcCC-CCCccchhhh-
Confidence 788888888877332 32 456778888888888876 4333 22 344 67788888888884 4444443333
Q ss_pred HHHhhhhhccCceeEEEccCCCCCc-ccccCCCCCCCccEEEEccCCCCcccCCc--CCCCCccEEEEccCccccccccc
Q 044062 439 DQQQQLCELSCRLEYLGLRSCEGLV-KLPQSSLGLNSLRDIEIYKCSSLVSFPEV--ALPSKLRKIRISSCDALKSLPEA 515 (567)
Q Consensus 439 ~~~~~l~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l~~~ 515 (567)
..+ ++|++|++++|.... .+|..+..+++|++|++++| .+..++.. ..+++|+.|++++|......|..
T Consensus 445 ---~~l----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 445 ---LGL----TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp ---TTC----TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred ---cCC----CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 344 788888888876333 25777888888888888886 45554433 23678888888776433333556
Q ss_pred cccCCCCCccEEEcccccccccccccCcc---cccCeEEEeeCCCC
Q 044062 516 WMCDTNSSLEILSIKHCCSLTYIAEAQLP---LSLKQLVIHNCDNM 558 (567)
Q Consensus 516 ~~~l~~~~L~~L~l~~c~~l~~~~~~~~~---~~L~~l~~~~c~~l 558 (567)
+..+ ++|++|++++| +++.++.. +. ++|++++++++|-.
T Consensus 517 ~~~l--~~L~~L~l~~N-~l~~~p~~-~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 517 YNQL--YSLSTLDCSFN-RIETSKGI-LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TTTC--TTCCEEECTTS-CCCCEESC-GGGSCTTCCEEECCSCCCC
T ss_pred ccCC--CcCCEEECCCC-cCcccCHh-HhhhcccCcEEEccCCCcc
Confidence 7677 78888888876 57777754 33 36888888876543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.5e-36 Score=322.60 Aligned_cols=457 Identities=14% Similarity=0.090 Sum_probs=224.4
Q ss_pred hhhhhhhhhccccceEEEecCCCCCcc-ccccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhc-ccc
Q 044062 11 ALSILPKLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKL-CAD 87 (567)
Q Consensus 11 ~~~~~~~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l-~~~ 87 (567)
...+|..++. ++++|++++|.++.+ |.+|..+++|++|++++|.++.+ |..|.++++|++|++++| .+..+ |..
T Consensus 24 l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 100 (606)
T 3t6q_A 24 LNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETA 100 (606)
T ss_dssp CSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTT
T ss_pred cccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhh
Confidence 3356666653 678888888877766 45677788888888888777765 566777888888888877 44444 455
Q ss_pred cccccccceeeccCccccccc-cccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeee
Q 044062 88 MGNLTKLHHLNNSNTYSLEEM-PVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTC 166 (567)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~ 166 (567)
++++++|++|++++| .+..+ |..+.++++|++|++..+....... +.+..++ +|+.|++++|.
T Consensus 101 ~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~--------------~L~~L~L~~n~ 164 (606)
T 3t6q_A 101 LSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKL-PKGFPTE--------------KLKVLDFQNNA 164 (606)
T ss_dssp TSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-CTTCCCT--------------TCCEEECCSSC
T ss_pred hcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCc-ccccCCc--------------ccCEEEcccCc
Confidence 777888888888877 56665 4557777777777765544322111 1111133 55555555431
Q ss_pred cCCCCCCccchhhhhhhccCCCCCCCc--EEEEeecCCCCCcccccCCCCC-----------------------------
Q 044062 167 STDGSSSREAETEMGVLDMLKPHKNLE--QFGICGYGGTKFPTWLGDSSFS----------------------------- 215 (567)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~----------------------------- 215 (567)
... .....+..+++|+ +|++.++.....+.... ...
T Consensus 165 l~~-----------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 165 IHY-----------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231 (606)
T ss_dssp CCE-----------ECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEE
T ss_pred ccc-----------cChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhHHHHhhhccccchhhee
Confidence 110 0011122234444 44444444433332221 122
Q ss_pred -----------------------ccceEEEecCCCcccCCC-CCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcc
Q 044062 216 -----------------------NLVTLKFEDCGMCTVLPS-VGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLE 271 (567)
Q Consensus 216 -----------------------~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 271 (567)
+|+.+++++|.+....+. ++.+++|++|++++|. +..++..+. .+++|+
T Consensus 232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~------~l~~L~ 304 (606)
T 3t6q_A 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLV------GLSTLK 304 (606)
T ss_dssp CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCC------SCTTCC
T ss_pred chhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhc------ccccCC
Confidence 455555555554333332 4555566666665553 333333221 155566
Q ss_pred eeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCC----CCCCcccEEEEecchhh-----hhhcCCCCCc
Q 044062 272 TLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFP----EHLPALQMLVIQECKEL-----LVSITSLPAL 342 (567)
Q Consensus 272 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~l~~L~~L~i~~~~~l-----~~~~~~~~~L 342 (567)
+|+++++.. ..... ..+..+++|++|++++| .+.+.++ ..+++|++|++++|... ...+..+++|
T Consensus 305 ~L~l~~n~l-~~~~~----~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 378 (606)
T 3t6q_A 305 KLVLSANKF-ENLCQ----ISASNFPSLTHLSIKGN-TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378 (606)
T ss_dssp EEECTTCCC-SBGGG----GCGGGCTTCSEEECCSC-SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTC
T ss_pred EEECccCCc-CcCch----hhhhccCcCCEEECCCC-CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCC
Confidence 666655421 11111 11244555666666554 2222222 23455555555555421 1234445555
Q ss_pred ceEEecCCCCccc----cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCc
Q 044062 343 CKLEIDGCKKVVW----RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSL 418 (567)
Q Consensus 343 ~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L 418 (567)
++|++++|..... ...+++|+.|++++|......+ ...+..+++|+.|++++|. +... ....+ ..+++|
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~-~~l~~L 451 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHSL-LDIS--SEQLF-DGLPAL 451 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTCC-CBTT--CTTTT-TTCTTC
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc---chhhhCcccCCEEECCCCc-cCCc--CHHHH-hCCCCC
Confidence 5555555544322 3344555555555554332221 1224445555555555554 3322 22223 445555
Q ss_pred cEEEEcCCCCcccc--ch-hhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCCCccEEEEccCCCCcccCCc--C
Q 044062 419 KRLTIDSCPKLQSL--VA-EEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEV--A 493 (567)
Q Consensus 419 ~~L~l~~c~~l~~~--~~-~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~ 493 (567)
++|++++| .++.. +. ..+ ..+ ++|++|++++|......|..+..+++|++|++++| .+..+... .
T Consensus 452 ~~L~L~~n-~l~~~~~~~~~~~----~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~ 521 (606)
T 3t6q_A 452 QHLNLQGN-HFPKGNIQKTNSL----QTL----GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALS 521 (606)
T ss_dssp CEEECTTC-BCGGGEECSSCGG----GGC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGT
T ss_pred CEEECCCC-CCCccccccchhh----ccC----CCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCChhHhC
Confidence 55555553 22221 10 111 222 55555555555422222444555555555555553 23332221 1
Q ss_pred CCCCccEEEEccCcccccccc-ccccCCCCCccEEEccccc
Q 044062 494 LPSKLRKIRISSCDALKSLPE-AWMCDTNSSLEILSIKHCC 533 (567)
Q Consensus 494 ~~~~L~~L~l~~c~~l~~l~~-~~~~l~~~~L~~L~l~~c~ 533 (567)
.+++| .|++++|. ++.+++ .+..+ ++|++|++++++
T Consensus 522 ~l~~L-~L~L~~N~-l~~~~~~~~~~l--~~L~~L~l~~N~ 558 (606)
T 3t6q_A 522 HLKGI-YLNLASNH-ISIILPSLLPIL--SQQRTINLRQNP 558 (606)
T ss_dssp TCCSC-EEECCSSC-CCCCCGGGHHHH--HTSSEEECTTCC
T ss_pred ccccc-EEECcCCc-ccccCHhhcccC--CCCCEEeCCCCC
Confidence 23445 55554433 333322 33344 455555555544
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.3e-36 Score=320.59 Aligned_cols=482 Identities=15% Similarity=0.108 Sum_probs=326.7
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCcc-ccccccccccceeeccCCCcccc-cHHHHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~ 78 (567)
|++|.+++ ..+..|.++++|++|++++|.++.+ |.+|..+++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus 39 Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 39 LSFNPLKI----LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp CTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred CCCCCcCE----eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 56777776 4444899999999999999999987 56789999999999999999987 788999999999999999
Q ss_pred cchhhcc-cccccccccceeeccCccccc--cccccccccccccccCceEeccCCCCCcccccccccccc---c-----e
Q 044062 79 DRLEKLC-ADMGNLTKLHHLNNSNTYSLE--EMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRG---T-----L 147 (567)
Q Consensus 79 ~~~~~l~-~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~---~-----~ 147 (567)
.+..++ ..++++++|++|++++| .+. .+|..++++++|++|++..+.... .....++.+..+.. . .
T Consensus 115 -~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 115 -KLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp -CCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTC
T ss_pred -ccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCC
Confidence 677666 56999999999999999 665 578889999999999876654322 12223333332221 0 0
Q ss_pred ee-----cccccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCC------cc-cccCCCCC
Q 044062 148 EI-----SKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKF------PT-WLGDSSFS 215 (567)
Q Consensus 148 ~~-----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~------~~-~~~~~~~~ 215 (567)
.+ ..+...+|+.++++++... .......+..+++++.+.+........ .. .+....-.
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~----------~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l 261 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNS----------SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSC----------HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred CcceeCcccccCceeeeeeccCCccc----------hhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence 11 1111235666766653111 011222344456666666643332211 00 01100111
Q ss_pred ccceEEE-ecCCCcccCCCCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCccc
Q 044062 216 NLVTLKF-EDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVE 294 (567)
Q Consensus 216 ~L~~L~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 294 (567)
.++.+++ ..+...+..+.+..+++|+.|+++++.. ..++ . +..+++|++|+++++.. ... + .+
T Consensus 262 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~------l~~~~~L~~L~l~~n~l-~~l-----p-~~- 325 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-D------VPKHFKWQSLSIIRCQL-KQF-----P-TL- 325 (606)
T ss_dssp EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-C------CCTTCCCSEEEEESCCC-SSC-----C-CC-
T ss_pred cHhheeccccccccccccccccCCCCCEEEecCccc-hhhh-h------ccccccCCEEEcccccC-ccc-----c-cC-
Confidence 3455555 3445455555677788899999988753 4444 1 23378888888888743 222 2 22
Q ss_pred CCCCccEEEEcCCCCcccCCCCCCCcccEEEEecchhh-----hhhcCCCCCcceEEecCCCCccc---cccCCCCCccc
Q 044062 295 RFPKLRELDILRCSKLQGTFPEHLPALQMLVIQECKEL-----LVSITSLPALCKLEIDGCKKVVW---RSATDHLGSQN 366 (567)
Q Consensus 295 ~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~L~~L~ 366 (567)
.+++|++|++++|..+.......+++|++|++++|... ...+..+++|++|++++|..... ...+++|+.|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence 67888999998875555333346788999999888532 34566788899999998875543 55678899999
Q ss_pred ccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccc-cchhhhhHHHhhhh
Q 044062 367 SVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQS-LVAEEEKDQQQQLC 445 (567)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~l~ 445 (567)
+++|...+..+ ...+..+++|+.|++++|. +... ....+ ..+++|++|++++| .++. +....+ ..+
T Consensus 406 l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~----~~l- 472 (606)
T 3vq2_A 406 FQHSTLKRVTE---FSAFLSLEKLLYLDISYTN-TKID--FDGIF-LGLTSLNTLKMAGN-SFKDNTLSNVF----ANT- 472 (606)
T ss_dssp CTTSEEESTTT---TTTTTTCTTCCEEECTTSC-CEEC--CTTTT-TTCTTCCEEECTTC-EEGGGEECSCC----TTC-
T ss_pred CCCCccCCccC---hhhhhccccCCEEECcCCC-CCcc--chhhh-cCCCCCCEEECCCC-cCCCcchHHhh----ccC-
Confidence 98887554432 1346778899999999987 4443 34444 77899999999885 4443 223333 344
Q ss_pred hccCceeEEEccCCCCCcccccCCCCCCCccEEEEccCCCCcccCCc--CCCCCccEEEEccCccccccccccccCCCCC
Q 044062 446 ELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEV--ALPSKLRKIRISSCDALKSLPEAWMCDTNSS 523 (567)
Q Consensus 446 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~l~~~~ 523 (567)
++|++|++++|......|..+..+++|++|++++| .+..+... ..+++|+.|++++|. ++.+|..+..++ ++
T Consensus 473 ---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~-~~ 546 (606)
T 3vq2_A 473 ---TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFP-KS 546 (606)
T ss_dssp ---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSC-TT
T ss_pred ---CCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhc-cc
Confidence 89999999998644444667888999999999986 45554322 237889999997764 888888777772 36
Q ss_pred ccEEEcccccc
Q 044062 524 LEILSIKHCCS 534 (567)
Q Consensus 524 L~~L~l~~c~~ 534 (567)
|++|++++++-
T Consensus 547 L~~l~l~~N~~ 557 (606)
T 3vq2_A 547 LAFFNLTNNSV 557 (606)
T ss_dssp CCEEECCSCCC
T ss_pred CcEEEccCCCc
Confidence 99999988653
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-34 Score=313.69 Aligned_cols=479 Identities=16% Similarity=0.149 Sum_probs=262.3
Q ss_pred eEEEecCCCCCccccccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhc-ccccccccccceeeccCc
Q 044062 25 RVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKL-CADMGNLTKLHHLNNSNT 102 (567)
Q Consensus 25 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l-~~~~~~l~~L~~L~l~~~ 102 (567)
++++.++++++.+|..++ +++++|++++|.++.+|. .|.++++|++|++++| .+..+ |..++++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC
Confidence 578999999999987776 789999999999998864 5999999999999998 56655 555899999999999999
Q ss_pred ccccccccc-ccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhh
Q 044062 103 YSLEEMPVG-IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMG 181 (567)
Q Consensus 103 ~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 181 (567)
.+..+|.. +.++++|+.|++..+.... .....+..++ +|++|+++.|.... .
T Consensus 84 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~--------------~L~~L~Ls~n~l~~-----------~ 136 (680)
T 1ziw_A 84 -ELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQK--------------NLITLDLSHNGLSS-----------T 136 (680)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCT--------------TCCEEECCSSCCSC-----------C
T ss_pred -ccCccChhhhccCCCCCEEECCCCccCc-cChhHccccC--------------CCCEEECCCCcccc-----------c
Confidence 88888874 9999999999877654322 2223345555 66666665532211 0
Q ss_pred hhccCCCCCCCcEEEEeecCCCCCccc-ccCCCCCccceEEEecCCCcccCC----------------------------
Q 044062 182 VLDMLKPHKNLEQFGICGYGGTKFPTW-LGDSSFSNLVTLKFEDCGMCTVLP---------------------------- 232 (567)
Q Consensus 182 ~l~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---------------------------- 232 (567)
....+..+++|++|++.++....++.. +....+++|+.|++++|.+.+..+
T Consensus 137 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 216 (680)
T 1ziw_A 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216 (680)
T ss_dssp CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHH
T ss_pred CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHH
Confidence 112234445555555555554443321 111123455555555554333222
Q ss_pred ------------------------CCCCCC--CCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeeccccccccccc
Q 044062 233 ------------------------SVGQLP--SLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIP 286 (567)
Q Consensus 233 ------------------------~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 286 (567)
.+..++ +|++|++++|.. ..++...+. .+++|++|+++++. +.....
T Consensus 217 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l-~~~~~~~~~-----~l~~L~~L~L~~n~-l~~~~~ 289 (680)
T 1ziw_A 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL-NVVGNDSFA-----WLPQLEYFFLEYNN-IQHLFS 289 (680)
T ss_dssp HHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC-CEECTTTTT-----TCTTCCEEECCSCC-BSEECT
T ss_pred HHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc-CccCccccc-----CcccccEeeCCCCc-cCccCh
Confidence 122222 255555544432 222211111 14555555555442 111111
Q ss_pred CCCCCcccCCCCccEEEEcCCCC-----------cccCCCCCCCcccEEEEecchhh---hhhcCCCCCcceEEecCCCC
Q 044062 287 HGSSEGVERFPKLRELDILRCSK-----------LQGTFPEHLPALQMLVIQECKEL---LVSITSLPALCKLEIDGCKK 352 (567)
Q Consensus 287 ~~~~~~~~~~~~L~~L~l~~c~~-----------l~~~~~~~l~~L~~L~i~~~~~l---~~~~~~~~~L~~L~l~~~~~ 352 (567)
..+..+++|++|+++++.. +.......+++|++|++++|... ...+..+++|++|++++|..
T Consensus 290 ----~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 290 ----HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp ----TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred ----hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 1123455555555554210 00001123556666666655421 22344556666666665542
Q ss_pred ccc------cc--cCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEc
Q 044062 353 VVW------RS--ATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTID 424 (567)
Q Consensus 353 ~~~------~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 424 (567)
... .. ..++|+.|++++|......+ ..+..+++|+.|+++++.....+ +...+ ..+++|++|+++
T Consensus 366 ~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~--~~~~~-~~l~~L~~L~Ls 438 (680)
T 1ziw_A 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIES----DAFSWLGHLEVLDLGLNEIGQEL--TGQEW-RGLENIFEIYLS 438 (680)
T ss_dssp CCCEECTTTTGGGTTSCCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCEEEC--CSGGG-TTCTTCCEEECC
T ss_pred hhhhcchhhhcccccCcCceEECCCCCCCeECh----hhhhCCCCCCEEeCCCCcCcccc--Ccccc-cCcccccEEecC
Confidence 110 00 11355555555555443332 45666777788887777632333 33334 566677777776
Q ss_pred CCCCccccchhhhh----------------------HHHhhhhhccCceeEEEccCCCCCcccc-cCCCCCCCccEEEEc
Q 044062 425 SCPKLQSLVAEEEK----------------------DQQQQLCELSCRLEYLGLRSCEGLVKLP-QSSLGLNSLRDIEIY 481 (567)
Q Consensus 425 ~c~~l~~~~~~~~~----------------------~~~~~l~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~ 481 (567)
+| .+..+....+. ..+..+ ++|+.|++++|. ++.++ ..+..+++|++|+++
T Consensus 439 ~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l----~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls 512 (680)
T 1ziw_A 439 YN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL----RNLTILDLSNNN-IANINDDMLEGLEKLEILDLQ 512 (680)
T ss_dssp SC-SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC----TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CC-CcceeChhhhhcCcccccchhccccccccccCCcccccC----CCCCEEECCCCC-CCcCChhhhccccccCEEeCC
Confidence 63 33333322220 001222 455666665544 34333 234556666666666
Q ss_pred cCCCCcccCCc----------CCCCCccEEEEccCcccccccc-ccccCCCCCccEEEcccccccccccccCcc--cccC
Q 044062 482 KCSSLVSFPEV----------ALPSKLRKIRISSCDALKSLPE-AWMCDTNSSLEILSIKHCCSLTYIAEAQLP--LSLK 548 (567)
Q Consensus 482 ~c~~l~~~~~~----------~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~ 548 (567)
+| .++.++.. ..+++|+.|++++| .++.+|. .+.++ ++|++|++++ ++++.++...+. ++|+
T Consensus 513 ~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l--~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 513 HN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDL--FELKIIDLGL-NNLNTLPASVFNNQVSLK 587 (680)
T ss_dssp SS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTC--TTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccc--cCcceeECCC-CCCCcCCHhHhCCCCCCC
Confidence 53 34433211 12456666666443 4556654 34555 6777777765 366666655443 6777
Q ss_pred eEEEeeCCCCCccCc
Q 044062 549 QLVIHNCDNMRTLTV 563 (567)
Q Consensus 549 ~l~~~~c~~l~~l~~ 563 (567)
+|++++| +++.+++
T Consensus 588 ~L~L~~N-~l~~~~~ 601 (680)
T 1ziw_A 588 SLNLQKN-LITSVEK 601 (680)
T ss_dssp EEECTTS-CCCBCCH
T ss_pred EEECCCC-cCCccCh
Confidence 7777764 5555543
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-34 Score=310.60 Aligned_cols=473 Identities=15% Similarity=0.091 Sum_probs=332.1
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCcc-ccccccccccceeeccCCCcccc-cHHHHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~ 78 (567)
|++|.+++ ..|..|.++++|++|++++|+++.+ |.+|..+++|++|++++|.++.+ |..|+.+++|++|++++|
T Consensus 40 Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 40 FSFNVLPT----IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp CTTCCCSE----ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred ccCCccCc----CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 57788887 5566899999999999999999976 67899999999999999999976 778999999999999999
Q ss_pred cchhhc-ccccccccccceeeccCcccccccc-ccccccccccccCceEeccCCCCCcccccccccccc------ceeec
Q 044062 79 DRLEKL-CADMGNLTKLHHLNNSNTYSLEEMP-VGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRG------TLEIS 150 (567)
Q Consensus 79 ~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~------~~~~~ 150 (567)
.+..+ |..++++++|++|++++| .+..++ ..+.++++|+.|++..+.... .....++.+..++. ...+.
T Consensus 116 -~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 116 -GISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp -CCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred -CcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEecCCCccC
Confidence 67766 456999999999999999 777653 345569999999876554321 11222333332210 00110
Q ss_pred -----ccccccccceEEEeeecC------------------CCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcc
Q 044062 151 -----KLENENLRELLLRWTCST------------------DGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPT 207 (567)
Q Consensus 151 -----~~~~~~L~~l~l~~~~~~------------------~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 207 (567)
.+....++.+++.++... ..............+..+.. .+++.|++.++....++.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~-~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MSVESINLQKHYFFNISS 271 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG-SEEEEEECTTCCCSSCCT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc-CceeEEEeecCccCccCH
Confidence 111134444444332100 00000000000011111211 168889998888877765
Q ss_pred cccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccC
Q 044062 208 WLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPH 287 (567)
Q Consensus 208 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 287 (567)
.... .+++|+.|++++|.+......+..+++|++|++++|.. ..+....+ ..+++|++|+++++.........
T Consensus 272 ~~~~-~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l-~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 272 NTFH-CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF-ENLCQISA-----SNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp TTTT-TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCC-SBGGGGCG-----GGCTTCSEEECCSCSSCCBCCSS
T ss_pred HHhc-cccCCCEEeccCCccCCCChhhcccccCCEEECccCCc-CcCchhhh-----hccCcCCEEECCCCCcccccchh
Confidence 4332 68999999999998664444688899999999999854 33322222 22899999999987533222221
Q ss_pred CCCCcccCCCCccEEEEcCCCCcccCC--C---CCCCcccEEEEecchh---hhhhcCCCCCcceEEecCCCCccc----
Q 044062 288 GSSEGVERFPKLRELDILRCSKLQGTF--P---EHLPALQMLVIQECKE---LLVSITSLPALCKLEIDGCKKVVW---- 355 (567)
Q Consensus 288 ~~~~~~~~~~~L~~L~l~~c~~l~~~~--~---~~l~~L~~L~i~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~---- 355 (567)
.+..+++|++|+++++ .+.+.. + ..+++|++|++++|.. ....+..+++|++|++++|.....
T Consensus 345 ----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 345 ----CLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp ----TTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred ----hhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 1367899999999995 555332 2 4679999999999863 245667789999999999987543
Q ss_pred -cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccch
Q 044062 356 -RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVA 434 (567)
Q Consensus 356 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 434 (567)
...+++|+.|++++|......+ ..+..+++|++|+++++..-...+.....+ ..+++|++|++++ +.++.+..
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~l~~L~~L~Ls~-n~l~~~~~ 493 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSE----QLFDGLPALQHLNLQGNHFPKGNIQKTNSL-QTLGRLEILVLSF-CDLSSIDQ 493 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCT----TTTTTCTTCCEEECTTCBCGGGEECSSCGG-GGCTTCCEEECTT-SCCCEECT
T ss_pred hhhCcccCCEEECCCCccCCcCH----HHHhCCCCCCEEECCCCCCCccccccchhh-ccCCCccEEECCC-CccCccCh
Confidence 5578899999999998765554 567889999999999998333221112334 7889999999999 46776765
Q ss_pred hhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCCCccEEEEccCCCCcccCCcC--CCCCccEEEEccCccc
Q 044062 435 EEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEVA--LPSKLRKIRISSCDAL 509 (567)
Q Consensus 435 ~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~l 509 (567)
..+ ..+ ++|++|++++|......|..+..+++| +|++++| .+..++... .+++|+.|++++|+-.
T Consensus 494 ~~~----~~l----~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 494 HAF----TSL----KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp TTT----TTC----TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred hhh----ccc----cCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCcc
Confidence 555 455 899999999987545667788999999 9999996 566665543 3689999999887643
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6e-34 Score=301.58 Aligned_cols=465 Identities=20% Similarity=0.182 Sum_probs=319.2
Q ss_pred chhhhhhhhhhccccceEEEecCCCCCcc-ccccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhccc
Q 044062 9 YLALSILPKLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKLCA 86 (567)
Q Consensus 9 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~ 86 (567)
+.+..+|+.+. ++|++|++++|+++.+ |.+|..+++|++|++++|.++.++ ..|..+++|++|++++| .+..++.
T Consensus 15 ~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 91 (549)
T 2z81_A 15 RSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSS 91 (549)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCH
T ss_pred CccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCH
Confidence 33445887665 7999999999999977 467899999999999999999874 67999999999999999 6777766
Q ss_pred c-cccccccceeeccCcccccc--ccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEE
Q 044062 87 D-MGNLTKLHHLNNSNTYSLEE--MPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLR 163 (567)
Q Consensus 87 ~-~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~ 163 (567)
. ++++++|++|++++| .+.. .|..+.++++|+.|++..+..........+..++ +|++|+++
T Consensus 92 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~--------------~L~~L~L~ 156 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT--------------SLNELEIK 156 (549)
T ss_dssp HHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC--------------EEEEEEEE
T ss_pred HHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhccc--------------ccCeeecc
Confidence 5 999999999999999 6764 4567999999999988776422222223455566 88899998
Q ss_pred eeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccC----CCCCCCCC
Q 044062 164 WTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVL----PSVGQLPS 239 (567)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~l~~ 239 (567)
+|.... .....+..+++|++|++.++....++.+... .+++|+.|++++|.+.+.. +....+++
T Consensus 157 ~n~l~~-----------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 157 ALSLRN-----------YQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp ETTCCE-----------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred CCcccc-----------cChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhc
Confidence 752211 1234566778899999998887777665532 5889999999999876532 22345789
Q ss_pred CcEEEEeCCcceeeecccccCCCCCCCCCCcceeeeccccccc--ccccCCCCCcccCCCCccEEEEcCCCCcccCC---
Q 044062 240 LKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWE--DWIPHGSSEGVERFPKLRELDILRCSKLQGTF--- 314 (567)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--- 314 (567)
|++|+++++.........+... ...+++|+.+++.++.... .+.. .....+..+++++.+.+.++ .+....
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~--~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~ 300 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKL--LRYILELSEVEFDDCTLNGLGDFNP-SESDVVSELGKVETVTIRRL-HIPQFYLFY 300 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGG--GGGCTTCCEEEEESCEEECCSCCCC-CTTTCCCCCTTCCEEEEESC-BCSCGGGSC
T ss_pred ccceeccccccchhHHHHHHHH--hhhhccccccccccccccccccccc-cchhhhhhhccccccccccc-ccchhhhcc
Confidence 9999999874322211111110 2237888999988774211 1111 01112356778888888875 332110
Q ss_pred --C---CCCCcccEEEEecchh--hhhhc-CCCCCcceEEecCCCCccc-------cccCCCCCcccccccCCCcccccc
Q 044062 315 --P---EHLPALQMLVIQECKE--LLVSI-TSLPALCKLEIDGCKKVVW-------RSATDHLGSQNSVVCRDTSNQVFL 379 (567)
Q Consensus 315 --~---~~l~~L~~L~i~~~~~--l~~~~-~~~~~L~~L~l~~~~~~~~-------~~~l~~L~~L~l~~~~~~~~~~~~ 379 (567)
+ ...++|++|++++|.. +...+ ..+++|++|++++|..... ...+++|+.|++++|........
T Consensus 301 ~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~- 379 (549)
T 2z81_A 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT- 379 (549)
T ss_dssp CCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH-
T ss_pred cchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccc-
Confidence 0 1246788888887752 22222 3578888888888876543 34677888888888865432110
Q ss_pred CCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCC
Q 044062 380 AGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSC 459 (567)
Q Consensus 380 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c 459 (567)
+..+..+++|++|++++|. ++.+ +. .+ ..+++|++|++++ +.++.++... |++|++|++++|
T Consensus 380 -~~~~~~l~~L~~L~Ls~N~-l~~l--p~-~~-~~~~~L~~L~Ls~-N~l~~l~~~~-----------~~~L~~L~Ls~N 441 (549)
T 2z81_A 380 -GEILLTLKNLTSLDISRNT-FHPM--PD-SC-QWPEKMRFLNLSS-TGIRVVKTCI-----------PQTLEVLDVSNN 441 (549)
T ss_dssp -HHHGGGCTTCCEEECTTCC-CCCC--CS-CC-CCCTTCCEEECTT-SCCSCCCTTS-----------CTTCSEEECCSS
T ss_pred -hhhhhcCCCCCEEECCCCC-CccC--Ch-hh-cccccccEEECCC-CCcccccchh-----------cCCceEEECCCC
Confidence 0124567888888888875 5554 32 33 5678888888887 4566555432 268888888887
Q ss_pred CCCcccccCCCCCCCccEEEEccCCCCcccCCcCCCCCccEEEEccCcccccccc-ccccCCCCCccEEEcccccc
Q 044062 460 EGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEVALPSKLRKIRISSCDALKSLPE-AWMCDTNSSLEILSIKHCCS 534 (567)
Q Consensus 460 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~~~L~~L~l~~c~~ 534 (567)
. ++.++ ..+++|++|++++| .++.++....+++|+.|++++| .++.+++ .+..+ ++|++|++++++-
T Consensus 442 ~-l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l--~~L~~L~l~~N~~ 509 (549)
T 2z81_A 442 N-LDSFS---LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRL--TSLQKIWLHTNPW 509 (549)
T ss_dssp C-CSCCC---CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGC--TTCCEEECCSSCB
T ss_pred C-hhhhc---ccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcCHHHHhcC--cccCEEEecCCCc
Confidence 5 55543 46788888888885 6777777666888888888765 4666554 46666 7888888888763
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-33 Score=296.74 Aligned_cols=459 Identities=18% Similarity=0.125 Sum_probs=257.3
Q ss_pred cchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhcc
Q 044062 8 GYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKLC 85 (567)
Q Consensus 8 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l~ 85 (567)
+.....+|..++ +++++|++++|+++.++ .+|..+++|++|++++|.++.++ ..|.++++||+|++++| .++.++
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 92 (570)
T 2z63_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLA 92 (570)
T ss_dssp SSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEEC
T ss_pred CCCccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccC
Confidence 334445776665 58999999999999775 57899999999999999999884 56899999999999998 576666
Q ss_pred -cccccccccceeeccCccccccccc-cccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEE
Q 044062 86 -ADMGNLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLR 163 (567)
Q Consensus 86 -~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~ 163 (567)
..|+++++|++|++++| .+..++. .++++++|++|++..+.......+..+++++ +|++|+++
T Consensus 93 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~--------------~L~~L~l~ 157 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT--------------NLEHLDLS 157 (570)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT--------------TCCEEECT
T ss_pred HhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccC--------------CCCEEeCc
Confidence 45899999999999999 7888775 5899999999987766543333455667777 88888887
Q ss_pred eeecCCCCCCccchhhhhhhccCCCCCCC----cEEEEeecCCCCCcccccCCCCCccceEEEecCCCccc-CC-CCCCC
Q 044062 164 WTCSTDGSSSREAETEMGVLDMLKPHKNL----EQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTV-LP-SVGQL 237 (567)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~-~~~~l 237 (567)
+|.... .+ ...+..+++| +.+++.++....++.... ...+|+.|++++|..... ++ .+..+
T Consensus 158 ~n~l~~--~~---------~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l 224 (570)
T 2z63_A 158 SNKIQS--IY---------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGL 224 (570)
T ss_dssp TSCCCE--EC---------GGGGHHHHTCTTCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCCSCTTHHHHHHHTT
T ss_pred CCccce--ec---------HHHccchhccchhhhhcccCCCCceecCHHHh--ccCcceeEecccccccccchhhhhcCc
Confidence 642211 00 1112222344 678888887766654433 234789999888742211 11 12223
Q ss_pred CCCc--------------------------------EEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccc
Q 044062 238 PSLK--------------------------------HLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWI 285 (567)
Q Consensus 238 ~~L~--------------------------------~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 285 (567)
++++ .+++.++.......... ...+++|++|+++++.. ..
T Consensus 225 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~l-~~-- 296 (570)
T 2z63_A 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-----FNCLTNVSSFSLVSVTI-ER-- 296 (570)
T ss_dssp TTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-----TGGGTTCSEEEEESCEE-CS--
T ss_pred cccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhh-----hcCcCcccEEEecCccc-hh--
Confidence 3333 33333332221111111 12255666666655421 11
Q ss_pred cCCCCCcccCCCCccEEEEcCCCCcccCCC-CCCCcccEEEEecchhhh-hhcCCCCCcceEEecCCCCccc------cc
Q 044062 286 PHGSSEGVERFPKLRELDILRCSKLQGTFP-EHLPALQMLVIQECKELL-VSITSLPALCKLEIDGCKKVVW------RS 357 (567)
Q Consensus 286 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~l~~L~~L~i~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~------~~ 357 (567)
++..+..+ +|++|++++| .+. .+| ..+++|++|++++|.... .....+++|++|++++|..... ..
T Consensus 297 ---l~~~~~~~-~L~~L~l~~n-~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 297 ---VKDFSYNF-GWQHLELVNC-KFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp ---CCBCCSCC-CCSEEEEESC-BCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred ---hhhhhccC-CccEEeeccC-ccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccc
Confidence 11112334 5666666664 333 233 345566666666554221 1113455666666666554322 33
Q ss_pred cCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCcccccccc-CccccCCCCccEEEEcCCCCccccchhh
Q 044062 358 ATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSH-NGLLQDICSLKRLTIDSCPKLQSLVAEE 436 (567)
Q Consensus 358 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 436 (567)
.+++|+.|++++|...+..+ . +..+++|+.|+++++. +... .. ..+ ..+++|++|++++| .+.......
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~----~-~~~l~~L~~L~l~~n~-l~~~--~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~ 440 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSS----N-FLGLEQLEHLDFQHSN-LKQM--SEFSVF-LSLRNLIYLDISHT-HTRVAFNGI 440 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEE----E-EETCTTCCEEECTTSE-EESC--TTSCTT-TTCTTCCEEECTTS-CCEECCTTT
T ss_pred ccCccCEEECCCCccccccc----c-ccccCCCCEEEccCCc-cccc--cchhhh-hcCCCCCEEeCcCC-cccccchhh
Confidence 45566666666554333222 1 3445566666666554 2222 11 122 45556666666553 333332222
Q ss_pred hhHHHhhhhhccCceeEEEccCCCCC-cccccCCCCCCCccEEEEccCCCCcccCCc--CCCCCccEEEEccCccccccc
Q 044062 437 EKDQQQQLCELSCRLEYLGLRSCEGL-VKLPQSSLGLNSLRDIEIYKCSSLVSFPEV--ALPSKLRKIRISSCDALKSLP 513 (567)
Q Consensus 437 ~~~~~~~l~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l~ 513 (567)
+ ..+ ++|++|++++|... ..+|..+..+++|++|++++| .+..+... ..+++|+.|++++| .++.++
T Consensus 441 ~----~~l----~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 441 F----NGL----SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp T----TTC----TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred h----hcC----CcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCC
Confidence 2 223 55666666665422 135555556666666666654 33333221 12455666666544 344443
Q ss_pred c-ccccCCCCCccEEEccccc
Q 044062 514 E-AWMCDTNSSLEILSIKHCC 533 (567)
Q Consensus 514 ~-~~~~l~~~~L~~L~l~~c~ 533 (567)
+ .+..+ ++|++|++++++
T Consensus 511 ~~~~~~l--~~L~~L~l~~N~ 529 (570)
T 2z63_A 511 DGIFDRL--TSLQKIWLHTNP 529 (570)
T ss_dssp TTTTTTC--TTCCEEECCSSC
T ss_pred HHHhhcc--cCCcEEEecCCc
Confidence 3 33444 556666666543
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=304.38 Aligned_cols=287 Identities=20% Similarity=0.171 Sum_probs=185.8
Q ss_pred CccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcc
Q 044062 215 SNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGV 293 (567)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 293 (567)
++|+.|++++|.+....+ .+..+++|+.|++++|......+..+. .+++|++|+++++. +..... ..+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~------~l~~L~~L~Ls~N~-l~~~~~----~~~ 334 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY------GLDNLQVLNLSYNL-LGELYS----SNF 334 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT------TCSSCCEEEEESCC-CSCCCS----CSC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc------CCCCCCEEECCCCC-CCccCH----HHh
Confidence 578888888887666554 466788888888888754333333322 27888888888763 222211 122
Q ss_pred cCCCCccEEEEcCCCCcccCCC---CCCCcccEEEEecchhhhhhcCCCCCcceEEecCCCCccccccCCCCCccccccc
Q 044062 294 ERFPKLRELDILRCSKLQGTFP---EHLPALQMLVIQECKELLVSITSLPALCKLEIDGCKKVVWRSATDHLGSQNSVVC 370 (567)
Q Consensus 294 ~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~i~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~ 370 (567)
..+++|++|+++++ .+....+ ..+++|+.|++++|... .+..+++|+.|++++|..........+++.+++++|
T Consensus 335 ~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N 411 (844)
T 3j0a_A 335 YGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALT--TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411 (844)
T ss_dssp SSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSC--CCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSC
T ss_pred cCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCCC--cccCCCCcchhccCCCCcccccccccccceeecccC
Confidence 56788888888884 5553332 24678888888887532 344577888888888876655445567778888777
Q ss_pred CCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhh-hHHHhhhhhccC
Q 044062 371 RDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEE-KDQQQQLCELSC 449 (567)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~~~~l~~~~~ 449 (567)
....... ...+..+++|+.|+++++. +... +.......+++|++|++++ +.++..+.... ...+.++ +
T Consensus 412 ~l~~l~~---~~~~~~l~~L~~L~Ls~N~-l~~~--~~~~~~~~~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~l----~ 480 (844)
T 3j0a_A 412 RLENLDI---LYFLLRVPHLQILILNQNR-FSSC--SGDQTPSENPSLEQLFLGE-NMLQLAWETELCWDVFEGL----S 480 (844)
T ss_dssp CCCSSTT---HHHHTTCTTCCEEEEESCC-CCCC--CSSSSSCSCTTCCBCEEES-CCCSSSCCSCCCSSCSSCB----C
T ss_pred ccccCch---hhhhhcCCccceeeCCCCc-cccc--ccccccccCCccccccCCC-CccccccccccchhhhcCc----c
Confidence 6543211 0113467889999998887 4433 3332235678899999988 45543332110 0011344 7
Q ss_pred ceeEEEccCCCCCccc-ccCCCCCCCccEEEEccCCCCcccCCcCCCCCccEEEEccCccccccccccccCCCCCccEEE
Q 044062 450 RLEYLGLRSCEGLVKL-PQSSLGLNSLRDIEIYKCSSLVSFPEVALPSKLRKIRISSCDALKSLPEAWMCDTNSSLEILS 528 (567)
Q Consensus 450 ~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~~~L~~L~ 528 (567)
+|+.|++++|. ++.+ +..+..+++|++|+++++ .++.++...+.++|+.|+++++ .++.+++.. + ++|+.|+
T Consensus 481 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N-~l~~~~~~~--~--~~L~~l~ 553 (844)
T 3j0a_A 481 HLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRN-QLLAPNPDV--F--VSLSVLD 553 (844)
T ss_dssp CEECCCCCHHH-HTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEE-CCCCCCSCC--C--SSCCEEE
T ss_pred cccEEECCCCc-ccccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCC-cCCCCChhH--h--CCcCEEE
Confidence 88999998875 5555 445678899999999984 7888877767788999999765 455554322 3 6788888
Q ss_pred ccccc
Q 044062 529 IKHCC 533 (567)
Q Consensus 529 l~~c~ 533 (567)
+.+++
T Consensus 554 l~~Np 558 (844)
T 3j0a_A 554 ITHNK 558 (844)
T ss_dssp EEEEC
T ss_pred ecCCC
Confidence 88754
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.2e-32 Score=289.52 Aligned_cols=451 Identities=18% Similarity=0.123 Sum_probs=329.3
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccccHH-HHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~ 78 (567)
|++|++++ ..|..|.++++|++|++++|+++.++ .+|..+++|++|++++|.++.+|.. |+.+++|++|++++|
T Consensus 33 Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 33 LSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred CcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 57788877 55668999999999999999999875 6789999999999999999988654 999999999999999
Q ss_pred cchhh--cccccccccccceeeccCccccccccc-cccccccccccCceEeccCCCCCccccccccccccceeecccccc
Q 044062 79 DRLEK--LCADMGNLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENE 155 (567)
Q Consensus 79 ~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 155 (567)
.++. .|..++++++|++|++++|..+..+|. .+.++++|++|++..+.... ..+..++.++
T Consensus 109 -~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~-------------- 172 (549)
T 2z81_A 109 -PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIR-------------- 172 (549)
T ss_dssp -CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCS--------------
T ss_pred -cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-cChhhhhccc--------------
Confidence 5664 456799999999999999955778874 69999999999887664322 2334455666
Q ss_pred cccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCc---ccccCCCCCccceEEEecCCCcccCC
Q 044062 156 NLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFP---TWLGDSSFSNLVTLKFEDCGMCTVLP 232 (567)
Q Consensus 156 ~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~ 232 (567)
+|++|+++++.... .+ . .....+++|+.|++.++....++ ..+. ..+++|+.|+++++.+.+..+
T Consensus 173 ~L~~L~l~~n~~~~--~~-------~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 173 DIHHLTLHLSESAF--LL-------E--IFADILSSVRYLELRDTNLARFQFSPLPVD-EVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp EEEEEEEECSBSTT--HH-------H--HHHHSTTTBSEEEEESCBCTTCCCCCCSSC-CCCCCCCEEEEESCEEEHHHH
T ss_pred cCceEecccCcccc--cc-------h--hhHhhcccccEEEccCCccccccccccchh-hhhhcccceeccccccchhHH
Confidence 88899998742211 00 0 01223689999999998876652 2222 257899999999987654322
Q ss_pred -----CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCC
Q 044062 233 -----SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRC 307 (567)
Q Consensus 233 -----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 307 (567)
.+..+++|+++++++|..................+++++.|.+.++..................++|++|+++++
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 245678999999999854322111100001134488999999987643222211111111134578999999995
Q ss_pred CCcccCCCC----CCCcccEEEEecchhhh------hhcCCCCCcceEEecCCCCccc------cccCCCCCcccccccC
Q 044062 308 SKLQGTFPE----HLPALQMLVIQECKELL------VSITSLPALCKLEIDGCKKVVW------RSATDHLGSQNSVVCR 371 (567)
Q Consensus 308 ~~l~~~~~~----~l~~L~~L~i~~~~~l~------~~~~~~~~L~~L~l~~~~~~~~------~~~l~~L~~L~l~~~~ 371 (567)
.+. .+|. .+++|++|++++|.... ..+..+++|++|++++|..... ...+++|+.|++++|.
T Consensus 321 -~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 321 -KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp -CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred -ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 676 6663 48999999999997432 2256789999999999987542 6688999999999996
Q ss_pred CCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCce
Q 044062 372 DTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRL 451 (567)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L 451 (567)
.. .++ ..+..+++|+.|++++|. +..+ +... .++|++|++++ +.++.+.. .+ ++|
T Consensus 399 l~-~lp----~~~~~~~~L~~L~Ls~N~-l~~l--~~~~----~~~L~~L~Ls~-N~l~~~~~--------~l----~~L 453 (549)
T 2z81_A 399 FH-PMP----DSCQWPEKMRFLNLSSTG-IRVV--KTCI----PQTLEVLDVSN-NNLDSFSL--------FL----PRL 453 (549)
T ss_dssp CC-CCC----SCCCCCTTCCEEECTTSC-CSCC--CTTS----CTTCSEEECCS-SCCSCCCC--------CC----TTC
T ss_pred Cc-cCC----hhhcccccccEEECCCCC-cccc--cchh----cCCceEEECCC-CChhhhcc--------cC----Chh
Confidence 54 444 456778999999999987 6554 3222 36899999998 46665532 22 899
Q ss_pred eEEEccCCCCCcccccCCCCCCCccEEEEccCCCCcccCCc--CCCCCccEEEEccCccccccc
Q 044062 452 EYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEV--ALPSKLRKIRISSCDALKSLP 513 (567)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l~ 513 (567)
++|++++|. ++.+|. ...+++|++|++++| .++.++.. ..+++|+.|++++|+-....+
T Consensus 454 ~~L~Ls~N~-l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 454 QELYISRNK-LKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSC-CSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cEEECCCCc-cCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999985 778886 567999999999995 67777654 347899999998887544443
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=302.16 Aligned_cols=473 Identities=18% Similarity=0.109 Sum_probs=270.1
Q ss_pred hhhhhhhccccceEEEecCCCCCcc-ccccccccccceeeccCCC-cccc-cHHHHccccCceeeccCccchhhc-cccc
Q 044062 13 SILPKLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTE-IKTL-PESVNKLYNLHTLLLEDCDRLEKL-CADM 88 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~-l~~l-p~~~~~l~~L~~L~L~~~~~~~~l-~~~~ 88 (567)
.+|. -.+++++|+|++|.++.+ +.+|.++++|++|+|++|. +..+ |..|.++++||+|+|++| .+..+ |..|
T Consensus 18 ~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~ 93 (844)
T 3j0a_A 18 QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAF 93 (844)
T ss_dssp CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSS
T ss_pred CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHc
Confidence 4665 346888899998888866 5678888899999998884 4466 677888889999999888 45554 6678
Q ss_pred ccccccceeeccCcccccc-cccc--ccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEee
Q 044062 89 GNLTKLHHLNNSNTYSLEE-MPVG--IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWT 165 (567)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~-lp~~--~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~ 165 (567)
+++++|++|++++| .+.. .|.. +.++++|++|++..+..........+++++ +|+.|+++.|
T Consensus 94 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~--------------~L~~L~Ls~N 158 (844)
T 3j0a_A 94 QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN--------------SLKSIDFSSN 158 (844)
T ss_dssp CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS--------------SCCEEEEESS
T ss_pred cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC--------------CCCEEECCCC
Confidence 88889999999888 4543 5544 888888888887766544333334456666 7777777664
Q ss_pred ecCCCCCCccchhhhhhhccCCCC--CCCcEEEEeecCCCCC-cccccCCCCC------ccceEEEecCCCcccCC----
Q 044062 166 CSTDGSSSREAETEMGVLDMLKPH--KNLEQFGICGYGGTKF-PTWLGDSSFS------NLVTLKFEDCGMCTVLP---- 232 (567)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~l~~~--~~L~~L~l~~~~~~~~-~~~~~~~~~~------~L~~L~l~~~~~~~~~~---- 232 (567)
.... ..+.. +..+ ++|+.|++.++..... +..+. .+. +|+.|++++|......+
T Consensus 159 ~i~~-~~~~~----------l~~l~~~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 159 QIFL-VCEHE----------LEPLQGKTLSFFSLAANSLYSRVSVDWG--KCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp CCCC-CCSGG----------GHHHHHCSSCCCEECCSBSCCCCCCCCC--SSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred cCCe-eCHHH----------cccccCCccceEECCCCccccccccchh--hcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 2221 11111 1111 4566666655544321 11111 111 26666666654332222
Q ss_pred ---------------------------------CCCC--CCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecc
Q 044062 233 ---------------------------------SVGQ--LPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEV 277 (567)
Q Consensus 233 ---------------------------------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 277 (567)
.+.+ .++|++|++++|... ......+. .+++|+.|++++
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~-----~l~~L~~L~L~~ 299 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFE-----TLKDLKVLNLAY 299 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCSS-----SCCCCCEEEEES
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc-ccChhhhh-----cCCCCCEEECCC
Confidence 1111 245666666665432 22222211 266666666665
Q ss_pred cccccccccCCCCCcccCCCCccEEEEcCCCCcccCCC---CCCCcccEEEEecchhh---hhhcCCCCCcceEEecCCC
Q 044062 278 MQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFP---EHLPALQMLVIQECKEL---LVSITSLPALCKLEIDGCK 351 (567)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~i~~~~~l---~~~~~~~~~L~~L~l~~~~ 351 (567)
+. +...... .+..+++|++|++++| .+.+..+ ..+++|+.|++++|... ...+..+++|+.|++++|.
T Consensus 300 n~-i~~~~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 300 NK-INKIADE----AFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CC-CCEECTT----TTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred Cc-CCCCChH----HhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 43 2221111 1245666666666663 4443323 23566666666666421 1234446666666666665
Q ss_pred CccccccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccc
Q 044062 352 KVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQS 431 (567)
Q Consensus 352 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 431 (567)
... ...+++|+.|++++|.... ++ ....+++.++++++. +..+ +...+...+++|++|++++ +.++.
T Consensus 374 l~~-i~~~~~L~~L~l~~N~l~~-l~-------~~~~~l~~L~ls~N~-l~~l--~~~~~~~~l~~L~~L~Ls~-N~l~~ 440 (844)
T 3j0a_A 374 LTT-IHFIPSIPDIFLSGNKLVT-LP-------KINLTANLIHLSENR-LENL--DILYFLLRVPHLQILILNQ-NRFSS 440 (844)
T ss_dssp SCC-CSSCCSCSEEEEESCCCCC-CC-------CCCTTCCEEECCSCC-CCSS--TTHHHHTTCTTCCEEEEES-CCCCC
T ss_pred CCc-ccCCCCcchhccCCCCccc-cc-------ccccccceeecccCc-cccC--chhhhhhcCCccceeeCCC-Ccccc
Confidence 433 2335666666666665432 11 223456666766655 4433 2222234667777777777 44443
Q ss_pred cchhhhhHHHhhhhhccCceeEEEccCCCCCcc------cccCCCCCCCccEEEEccCCCCcccCCcC--CCCCccEEEE
Q 044062 432 LVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVK------LPQSSLGLNSLRDIEIYKCSSLVSFPEVA--LPSKLRKIRI 503 (567)
Q Consensus 432 ~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~------~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l 503 (567)
+...... ..+ ++|+.|+++++. ++. .+..+..+++|++|++++| .++.++... .+++|+.|++
T Consensus 441 ~~~~~~~---~~~----~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 511 (844)
T 3j0a_A 441 CSGDQTP---SEN----PSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSL 511 (844)
T ss_dssp CCSSSSS---CSC----TTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEE
T ss_pred ccccccc---ccC----CccccccCCCCc-cccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeEC
Confidence 3222110 112 677777777765 331 2234566777777787774 566665543 3677888888
Q ss_pred ccCccccccccccccCCCCCccEEEcccccccccccccCcccccCeEEEeeCCC
Q 044062 504 SSCDALKSLPEAWMCDTNSSLEILSIKHCCSLTYIAEAQLPLSLKQLVIHNCDN 557 (567)
Q Consensus 504 ~~c~~l~~l~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~~~~c~~ 557 (567)
+++ .++.+++... . ++|++|+++++ +++.+....+ ++|+.++++++|-
T Consensus 512 s~N-~l~~l~~~~~--~-~~L~~L~Ls~N-~l~~~~~~~~-~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 512 NSN-RLTVLSHNDL--P-ANLEILDISRN-QLLAPNPDVF-VSLSVLDITHNKF 559 (844)
T ss_dssp ESC-CCSSCCCCCC--C-SCCCEEEEEEE-CCCCCCSCCC-SSCCEEEEEEECC
T ss_pred CCC-CCCccChhhh--h-ccccEEECCCC-cCCCCChhHh-CCcCEEEecCCCc
Confidence 554 5666665321 2 57788888764 5555554333 4777788777553
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=285.79 Aligned_cols=116 Identities=23% Similarity=0.212 Sum_probs=91.4
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccc-cHHHHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~ 78 (567)
+++|++++ +|..++ ++|++|++++|.++.++ .+|..+++|++|++++|.++.+ |..|+.+++|++|++++|
T Consensus 7 ls~n~l~~-----ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 7 RSKNGLIH-----VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CTTSCCSS-----CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred cCCCCccc-----cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 45666664 776666 78889999988888775 5788888899999998888877 677888889999999888
Q ss_pred cchhhcccccccccccceeeccCcccccc--ccccccccccccccCceEec
Q 044062 79 DRLEKLCADMGNLTKLHHLNNSNTYSLEE--MPVGIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 79 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~~~~~~ 127 (567)
.++.+|.. .+++|++|++++| .+.. +|..++++++|+.|++..+.
T Consensus 80 -~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 80 -KLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp -CCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred -ceeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcc
Confidence 67778776 7888999999888 5654 45678888888888776654
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=289.52 Aligned_cols=444 Identities=17% Similarity=0.171 Sum_probs=314.5
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCccccc-HHHHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~ 78 (567)
|++|.+++ ..+..|..+++|++|++++|+++.++ .+|..+++|++|++++|.++.+| ..|..+++|++|++++|
T Consensus 35 Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 35 LSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CCSCCCCE----ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred ccCCccCc----cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 56777776 44558999999999999999999885 56899999999999999999885 67999999999999999
Q ss_pred cchhhccc-ccccccccceeeccCcccccc--ccccccccccccccCceEeccCCCCCccccccccccccceeecccccc
Q 044062 79 DRLEKLCA-DMGNLTKLHHLNNSNTYSLEE--MPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENE 155 (567)
Q Consensus 79 ~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 155 (567)
.++.++. .++++++|++|++++| .+.. +|..+.++++|++|++..+.... .....++.++
T Consensus 111 -~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~-------------- 173 (570)
T 2z63_A 111 -NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLH-------------- 173 (570)
T ss_dssp -CCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHH--------------
T ss_pred -ccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchh--------------
Confidence 6777776 4999999999999999 6664 68889999999999876543221 1223445555
Q ss_pred cc----cceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCC--Ccccc--------------------
Q 044062 156 NL----RELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTK--FPTWL-------------------- 209 (567)
Q Consensus 156 ~L----~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--~~~~~-------------------- 209 (567)
+| +.++++.+.... .+ ...+.. .+|+.|++.++.... ++..+
T Consensus 174 ~L~~~~~~L~l~~n~l~~--~~---------~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNF--IQ---------PGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp TCTTCCCEEECTTCCCCE--EC---------TTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred ccchhhhhcccCCCCcee--cC---------HHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 44 455655431111 00 111222 368888877652110 01000
Q ss_pred -----cCCCCC-----ccceEEEecC-CCcccCC-CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecc
Q 044062 210 -----GDSSFS-----NLVTLKFEDC-GMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEV 277 (567)
Q Consensus 210 -----~~~~~~-----~L~~L~l~~~-~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 277 (567)
....+. .++.+++.++ ......+ .+..+++|++|++++|. +..++..+.. + +|++|++++
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~------~-~L~~L~l~~ 313 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYN------F-GWQHLELVN 313 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCSC------C-CCSEEEEES
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhcc------C-CccEEeecc
Confidence 000111 3455666665 2223333 46778999999999984 4455443322 6 999999998
Q ss_pred cccccccccCCCCCcccCCCCccEEEEcCCCCcccCCC-CCCCcccEEEEecchhh-----hhhcCCCCCcceEEecCCC
Q 044062 278 MQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFP-EHLPALQMLVIQECKEL-----LVSITSLPALCKLEIDGCK 351 (567)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~l~~L~~L~i~~~~~l-----~~~~~~~~~L~~L~l~~~~ 351 (567)
+.. ... +. ..+++|++|++.++. +.+.++ ..+++|++|++++|... ...+..+++|++|++++|.
T Consensus 314 n~~-~~l-----~~--~~l~~L~~L~l~~n~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 384 (570)
T 2z63_A 314 CKF-GQF-----PT--LKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384 (570)
T ss_dssp CBC-SSC-----CB--CBCSSCCEEEEESCB-SCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS
T ss_pred Ccc-ccc-----Cc--ccccccCEEeCcCCc-cccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc
Confidence 743 211 11 468999999999964 443444 57899999999998632 3456679999999999998
Q ss_pred Cccc---cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCC
Q 044062 352 KVVW---RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPK 428 (567)
Q Consensus 352 ~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 428 (567)
.... ...+++|+.|++++|......+ ...+..+++|+.|++++|. +... ....+ ..+++|++|++++|..
T Consensus 385 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~-~~l~~L~~L~l~~n~l 457 (570)
T 2z63_A 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTH-TRVA--FNGIF-NGLSSLEVLKMAGNSF 457 (570)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESCTT---SCTTTTCTTCCEEECTTSC-CEEC--CTTTT-TTCTTCCEEECTTCEE
T ss_pred cccccccccccCCCCEEEccCCccccccc---hhhhhcCCCCCEEeCcCCc-cccc--chhhh-hcCCcCcEEECcCCcC
Confidence 7655 5678999999999987554332 1346788999999999997 4444 34445 7889999999999543
Q ss_pred cc-ccchhhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCCCccEEEEccCCCCcccCCcC--CCCCccEEEEcc
Q 044062 429 LQ-SLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEVA--LPSKLRKIRISS 505 (567)
Q Consensus 429 l~-~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~ 505 (567)
.. .++ ..+ ..+ ++|++|++++|......|..+..+++|++|++++| .++.++... .+++|+.|++++
T Consensus 458 ~~~~~p-~~~----~~l----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 458 QENFLP-DIF----TEL----RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp GGGEEC-SCC----TTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccccch-hhh----hcc----cCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecC
Confidence 21 233 222 344 89999999998743344778899999999999996 677776543 378999999988
Q ss_pred Cccccc
Q 044062 506 CDALKS 511 (567)
Q Consensus 506 c~~l~~ 511 (567)
++.-..
T Consensus 528 N~~~~~ 533 (570)
T 2z63_A 528 NPWDCS 533 (570)
T ss_dssp SCBCCC
T ss_pred CcccCC
Confidence 764333
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-32 Score=292.88 Aligned_cols=392 Identities=18% Similarity=0.179 Sum_probs=248.7
Q ss_pred CCCcccccHHHHccccCceeeccCccchhh------------------cccccc--cccccceeeccCcccccccccccc
Q 044062 54 GTEIKTLPESVNKLYNLHTLLLEDCDRLEK------------------LCADMG--NLTKLHHLNNSNTYSLEEMPVGIG 113 (567)
Q Consensus 54 ~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~lp~~~~ 113 (567)
+|.++.+|..++++++|++|+|++| .+.. +|+.++ ++++|++|++++|.....+|..++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 4566678999999999999999999 4666 999988 999999999999966778888899
Q ss_pred ccccccccCceEeccCCC-CCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCC
Q 044062 114 KLTCLQTLSNFVVGKDSG-LRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNL 192 (567)
Q Consensus 114 ~l~~L~~L~~~~~~~~~~-~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L 192 (567)
++++|+.|++..+..... ..+..+..+ ..+..+++|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L-------------------------------------------~~~~~l~~L 307 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQAL-------------------------------------------ADAPVGEKI 307 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHH-------------------------------------------HHSGGGGTC
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhh-------------------------------------------hccccCCCC
Confidence 999998887554420000 111111111 112223577
Q ss_pred cEEEEeecCCCCCcc--cccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCC-
Q 044062 193 EQFGICGYGGTKFPT--WLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPC- 269 (567)
Q Consensus 193 ~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~- 269 (567)
++|++.++....+|. .+. .+++|+.|++++|.+.+.+|.++.+++|++|++++|. +..++..+.. +++
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~------l~~~ 378 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCG------FTEQ 378 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCTTSEE------ECTT
T ss_pred CEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccHhhhh------hccc
Confidence 788887777777776 555 6788888888888876566666677788888887774 3344332211 344
Q ss_pred cceeeecccccccccccCCCCCcccC--CCCccEEEEcCCCCcccCCCCCCCcccEEEEecchhhhhhcCCCCCcceEEe
Q 044062 270 LETLRFEVMQEWEDWIPHGSSEGVER--FPKLRELDILRCSKLQGTFPEHLPALQMLVIQECKELLVSITSLPALCKLEI 347 (567)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~l~~~~~~~~~L~~L~l 347 (567)
|++|+++++.. ... +..+.. +++|++|++++| .+.+..|..++.
T Consensus 379 L~~L~Ls~N~l-~~l-----p~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~--------------------------- 424 (636)
T 4eco_A 379 VENLSFAHNKL-KYI-----PNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDP--------------------------- 424 (636)
T ss_dssp CCEEECCSSCC-SSC-----CSCCCTTCSSCEEEEECCSS-CTTTTTTCSSCT---------------------------
T ss_pred CcEEEccCCcC-ccc-----chhhhhcccCccCEEECcCC-cCCCcchhhhcc---------------------------
Confidence 55555544321 110 100011 123444444332 222222211110
Q ss_pred cCCCCccccccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccC-------CCCccE
Q 044062 348 DGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQD-------ICSLKR 420 (567)
Q Consensus 348 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-------~~~L~~ 420 (567)
+ ......+++|+.|++++|....... ..+..+++|+.|+++++. +..+ +...+ .. +++|++
T Consensus 425 --~--~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~~l~~L~~L~Ls~N~-l~~i--~~~~~-~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 425 --L--DPTPFKGINVSSINLSNNQISKFPK----ELFSTGSPLSSINLMGNM-LTEI--PKNSL-KDENENFKNTYLLTS 492 (636)
T ss_dssp --T--CSSCCCCCCEEEEECCSSCCCSCCT----HHHHTTCCCSEEECCSSC-CSBC--CSSSS-EETTEECTTGGGCCE
T ss_pred --c--ccccccCCCCCEEECcCCccCcCCH----HHHccCCCCCEEECCCCC-CCCc--CHHHh-ccccccccccCCccE
Confidence 0 0001145689999999987663221 234468899999999987 5565 54444 22 238999
Q ss_pred EEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCCCccEEEEccC------CCCcccCCc-C
Q 044062 421 LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKC------SSLVSFPEV-A 493 (567)
Q Consensus 421 L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c------~~l~~~~~~-~ 493 (567)
|++++ +.++.++..... ..+ ++|+.|++++|. ++.+|..+..+++|++|++++| .....+|.. .
T Consensus 493 L~Ls~-N~l~~lp~~~~~---~~l----~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 493 IDLRF-NKLTKLSDDFRA---TTL----PYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp EECCS-SCCCBCCGGGST---TTC----TTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred EECcC-CcCCccChhhhh---ccC----CCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 99998 567766643210 133 899999999976 6668888999999999999653 223344432 2
Q ss_pred CCCCccEEEEccCccccccccccccCCCCCccEEEcccccccccccccCcc----------cccCeEEEeeCCCCC
Q 044062 494 LPSKLRKIRISSCDALKSLPEAWMCDTNSSLEILSIKHCCSLTYIAEAQLP----------LSLKQLVIHNCDNMR 559 (567)
Q Consensus 494 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~----------~~L~~l~~~~c~~l~ 559 (567)
.+++|+.|++++|. ++.+|..+. ++|++|++++++ ++.+...++. ...+..++++|+.++
T Consensus 564 ~l~~L~~L~Ls~N~-l~~ip~~~~----~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 564 LCPSLTQLQIGSND-IRKVNEKIT----PNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp GCSSCCEEECCSSC-CCBCCSCCC----TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred cCCCCCEEECCCCc-CCccCHhHh----CcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 37899999997765 588887542 789999999975 4444432222 233556788998775
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=280.03 Aligned_cols=440 Identities=16% Similarity=0.121 Sum_probs=246.5
Q ss_pred eEEEecCCCCCccccccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhc-ccccccccccceeeccCc
Q 044062 25 RVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKL-CADMGNLTKLHHLNNSNT 102 (567)
Q Consensus 25 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l-~~~~~~l~~L~~L~l~~~ 102 (567)
+++++++|+++.+|..+. ++|++|++++|.++.++ ..|..+++|++|++++| .++.+ |..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 589999999999998776 89999999999999885 67999999999999999 56666 667999999999999999
Q ss_pred cccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhh
Q 044062 103 YSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGV 182 (567)
Q Consensus 103 ~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 182 (567)
.+..+|.. .+++|++|++..+.......+..++.++ +|+.|++++|.... .
T Consensus 80 -~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~--------------~L~~L~L~~n~l~~-----------~- 130 (520)
T 2z7x_B 80 -KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS--------------QLKFLGLSTTHLEK-----------S- 130 (520)
T ss_dssp -CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT--------------TCCEEEEEESSCCG-----------G-
T ss_pred -ceeecCcc--ccCCccEEeccCCccccccchhhhccCC--------------cceEEEecCcccch-----------h-
Confidence 88899887 8999999988776544433445677777 88889888752211 1
Q ss_pred hccCCCCCCC--cEEEEeecCC--C-CCcccccCCCCC-ccceEEEecCCCcccCC--CCCCCCCCcEEEEeCCc-----
Q 044062 183 LDMLKPHKNL--EQFGICGYGG--T-KFPTWLGDSSFS-NLVTLKFEDCGMCTVLP--SVGQLPSLKHLTVRGMS----- 249 (567)
Q Consensus 183 l~~l~~~~~L--~~L~l~~~~~--~-~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~----- 249 (567)
.+..+++| +.|++.++.. . ..|..+. .+. +...+++++|...+.++ .+..+++|+.+++++|.
T Consensus 131 --~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~--~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 206 (520)
T 2z7x_B 131 --SVLPIAHLNISKVLLVLGETYGEKEDPEGLQ--DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206 (520)
T ss_dssp --GGGGGTTSCEEEEEEEECTTTTSSCCTTTTT--TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT
T ss_pred --hccccccceeeEEEeeccccccccccccccc--ccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc
Confidence 12233455 8888888765 2 2233332 222 23345666666665554 35567888888888764
Q ss_pred --ceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCC--------CCC
Q 044062 250 --RVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPE--------HLP 319 (567)
Q Consensus 250 --~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--------~l~ 319 (567)
....++ . +..+++|+.|+++++..-.... ...... ...++|++|++++| .+.+.+|. .++
T Consensus 207 ~~~~~~~~-~------l~~l~~L~~L~l~~~~l~~~~~-~~~~~~-~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 207 SYFLSILA-K------LQTNPKLSNLTLNNIETTWNSF-IRILQL-VWHTTVWYFSISNV-KLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp HHHHHHHH-G------GGGCTTCCEEEEEEEEEEHHHH-HHHHHH-HHTSSCSEEEEEEE-EEESCCCCCCCCCCSCCCC
T ss_pred ceeecchh-h------hccccchhhccccccccCHHHH-HHHHHH-hhhCcccEEEeecc-cccCccccchhhcccccCc
Confidence 111121 1 2227788888887653211100 000000 12457888888774 45544543 244
Q ss_pred cccEEEEecchh-hh-hhcCC---CCCcceEEecCCCCcccc--ccCCCCCcccccccCCCccccccCCCCCCCCCCcCe
Q 044062 320 ALQMLVIQECKE-LL-VSITS---LPALCKLEIDGCKKVVWR--SATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEE 392 (567)
Q Consensus 320 ~L~~L~i~~~~~-l~-~~~~~---~~~L~~L~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 392 (567)
+|+.++++++.. +. ..+.. -.+|+.|++++|...... ..+++|+.|++++|...+..+ ..+
T Consensus 277 ~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~-------- 344 (520)
T 2z7x_B 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF----ENC-------- 344 (520)
T ss_dssp EEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT----TTC--------
T ss_pred eeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhh----hhh--------
Confidence 555555555432 00 00001 134666666666543331 344444444444444333222 223
Q ss_pred EEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCcc-cccC-CC
Q 044062 393 LEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVK-LPQS-SL 470 (567)
Q Consensus 393 L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-~~~~-~~ 470 (567)
..+++|++|++++ +.++.++.. ...+..+ ++|++|++++|. ++. +|.. +.
T Consensus 345 --------------------~~l~~L~~L~L~~-N~l~~l~~~--~~~~~~l----~~L~~L~Ls~N~-l~~~l~~~~~~ 396 (520)
T 2z7x_B 345 --------------------GHLTELETLILQM-NQLKELSKI--AEMTTQM----KSLQQLDISQNS-VSYDEKKGDCS 396 (520)
T ss_dssp --------------------CCCSSCCEEECCS-SCCCBHHHH--HHHHTTC----TTCCEEECCSSC-CBCCGGGCSCC
T ss_pred --------------------ccCCCCCEEEccC-CccCccccc--hHHHhhC----CCCCEEECCCCc-CCcccccchhc
Confidence 3445555555554 233322110 0011222 455555555544 222 4332 34
Q ss_pred CCCCccEEEEccCCCCcccCCcCCCCCccEEEEccCccccccccccccCCCCCccEEEcccccccccccccCcc--cccC
Q 044062 471 GLNSLRDIEIYKCSSLVSFPEVALPSKLRKIRISSCDALKSLPEAWMCDTNSSLEILSIKHCCSLTYIAEAQLP--LSLK 548 (567)
Q Consensus 471 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~ 548 (567)
.+++|++|++++|.....++. .++++|+.|++++| .++.+|..+..+ ++|++|++++| +++.++...+. ++|+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~-~l~~~L~~L~Ls~N-~l~~ip~~~~~l--~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSN-KIKSIPKQVVKL--EALQELNVASN-QLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGG-SCCTTCCEEECCSS-CCCCCCGGGGGC--TTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCccCCEEECcCCCCCcchhh-hhcccCCEEECCCC-cccccchhhhcC--CCCCEEECCCC-cCCccCHHHhccCCccc
Confidence 445555555555422122221 12345555555443 344555444444 45555555543 44444433222 4555
Q ss_pred eEEEeeC
Q 044062 549 QLVIHNC 555 (567)
Q Consensus 549 ~l~~~~c 555 (567)
+++++++
T Consensus 472 ~L~l~~N 478 (520)
T 2z7x_B 472 KIWLHTN 478 (520)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 5555544
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.7e-31 Score=288.29 Aligned_cols=361 Identities=14% Similarity=0.094 Sum_probs=208.8
Q ss_pred CCcccccHHHHccccCceeeccCccchhh------------------cccccc--cccccceeeccCccccccccccccc
Q 044062 55 TEIKTLPESVNKLYNLHTLLLEDCDRLEK------------------LCADMG--NLTKLHHLNNSNTYSLEEMPVGIGK 114 (567)
Q Consensus 55 ~~l~~lp~~~~~l~~L~~L~L~~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~ 114 (567)
|.++.+|..++++++|++|+|++| .+.. +|..++ ++++|+.|++++|.....+|..+.+
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 566668999999999999999999 4555 898887 9999999999999667788988999
Q ss_pred cccccccCceEeccCCC-CCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCc
Q 044062 115 LTCLQTLSNFVVGKDSG-LRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLE 193 (567)
Q Consensus 115 l~~L~~L~~~~~~~~~~-~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~ 193 (567)
+++|+.|++..+..... ..+..+..+. ..+..+++|+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~------------------------------------------~~~~~l~~L~ 551 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLA------------------------------------------DDEDTGPKIQ 551 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHH------------------------------------------HCTTTTTTCC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhh------------------------------------------hcccccCCcc
Confidence 99998887544420000 0111111111 1344557888
Q ss_pred EEEEeecCCCCCcc--cccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCC-c
Q 044062 194 QFGICGYGGTKFPT--WLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPC-L 270 (567)
Q Consensus 194 ~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-L 270 (567)
.|++.++....+|. .+. .+++|+.|++++|.+. .+|.++.+++|++|++++|.. ..++..+.. +++ |
T Consensus 552 ~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l-~~lp~~l~~------l~~~L 621 (876)
T 4ecn_A 552 IFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIPEDFCA------FTDQV 621 (876)
T ss_dssp EEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCC-SCCCTTSCE------ECTTC
T ss_pred EEEeeCCcCCccCChhhhh--cCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcc-ccchHHHhh------ccccC
Confidence 88888888777777 555 6888888888888866 666777788888888888753 344433222 666 7
Q ss_pred ceeeecccccccccccCCCCCcccCC--CCccEEEEcCCCCcccCCCCCCCcccEEEEecchhhhhhcC--CCCCcceEE
Q 044062 271 ETLRFEVMQEWEDWIPHGSSEGVERF--PKLRELDILRCSKLQGTFPEHLPALQMLVIQECKELLVSIT--SLPALCKLE 346 (567)
Q Consensus 271 ~~L~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~l~~~~~--~~~~L~~L~ 346 (567)
+.|+++++. +... +..+... ++|+.|++++| .+.+.+|... ..+. ..++|+.|+
T Consensus 622 ~~L~Ls~N~-L~~l-----p~~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~---------------~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 622 EGLGFSHNK-LKYI-----PNIFNAKSVYVMGSVDFSYN-KIGSEGRNIS---------------CSMDDYKGINASTVT 679 (876)
T ss_dssp CEEECCSSC-CCSC-----CSCCCTTCSSCEEEEECCSS-CTTTTSSSCS---------------SCTTTCCCCCEEEEE
T ss_pred CEEECcCCC-CCcC-----chhhhccccCCCCEEECcCC-cCCCccccch---------------hhhccccCCCcCEEE
Confidence 777777664 2211 1111222 34777777774 5554333210 0000 122344444
Q ss_pred ecCCCCccc----cccCCCCCcccccccCCCcccccc-CC---CCCCCCCCcCeEEEccCCCccccccccCcc-ccCCCC
Q 044062 347 IDGCKKVVW----RSATDHLGSQNSVVCRDTSNQVFL-AG---PLKPRIPKLEELEIKNIKNETYIWKSHNGL-LQDICS 417 (567)
Q Consensus 347 l~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~-~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~ 417 (567)
+++|..... ...+++|+.|++++|... .++.. .. +...++++|+.|++++|. +..+ +. .+ ...+++
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~l--p~-~l~~~~l~~ 754 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSL--SD-DFRATTLPY 754 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCC--CG-GGSTTTCTT
T ss_pred ccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-Cccc--hH-HhhhccCCC
Confidence 444443322 112334444444443322 11100 00 001223467777777764 4444 22 22 125667
Q ss_pred ccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccC------CCCCcccccCCCCCCCccEEEEccCCCCcccCC
Q 044062 418 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRS------CEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPE 491 (567)
Q Consensus 418 L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~------c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 491 (567)
|+.|++++ +.++.++... ..+ ++|+.|++++ |.....+|..+..+++|++|++++| .+..+|.
T Consensus 755 L~~L~Ls~-N~L~~lp~~l-----~~L----~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~ 823 (876)
T 4ecn_A 755 LSNMDVSY-NCFSSFPTQP-----LNS----SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDE 823 (876)
T ss_dssp CCEEECCS-SCCSSCCCGG-----GGC----TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCS
T ss_pred cCEEEeCC-CCCCccchhh-----hcC----CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCH
Confidence 77777766 4444443322 233 6677777755 3333455666666677777777764 3466655
Q ss_pred cCCCCCccEEEEccCc
Q 044062 492 VALPSKLRKIRISSCD 507 (567)
Q Consensus 492 ~~~~~~L~~L~l~~c~ 507 (567)
. +.++|+.|++++|+
T Consensus 824 ~-l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 824 K-LTPQLYILDIADNP 838 (876)
T ss_dssp C-CCSSSCEEECCSCT
T ss_pred h-hcCCCCEEECCCCC
Confidence 4 34566666665554
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.3e-30 Score=281.17 Aligned_cols=488 Identities=18% Similarity=0.092 Sum_probs=308.1
Q ss_pred ccchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhc
Q 044062 7 HGYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKL 84 (567)
Q Consensus 7 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l 84 (567)
++.....+|+.++ +++++|+|++|+++.++ .+|.++++|++|+|++|.++.+|. +|.++++|++|+|++| .++.+
T Consensus 39 ~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSL 115 (635)
T ss_dssp TTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEE
T ss_pred CCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCC
Confidence 3334556787776 58999999999999886 578999999999999999998854 5889999999999998 68888
Q ss_pred ccc-cccccccceeeccCcccccccccc-ccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEE
Q 044062 85 CAD-MGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLL 162 (567)
Q Consensus 85 ~~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l 162 (567)
|.. |+++++|++|++++| .+..+|.. ++++++|+.|++..+..........+..++ +|+.|++
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~--------------~L~~L~L 180 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT--------------NLEHLDL 180 (635)
T ss_dssp CGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT--------------TCCEEEC
T ss_pred CHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccch--------------hhhhhcc
Confidence 765 789999999999999 78888764 889999999987766544434444556666 7777777
Q ss_pred EeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC----------
Q 044062 163 RWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP---------- 232 (567)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------- 232 (567)
++|.... ..+.. ...+..+. .....+++..+....++.... ....++.+++.++.......
T Consensus 181 ~~N~l~~-~~~~~----l~~L~~l~--~~~~~~~ls~n~l~~i~~~~~--~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l 251 (635)
T 4g8a_A 181 SSNKIQS-IYCTD----LRVLHQMP--LLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 251 (635)
T ss_dssp CSSCCCE-ECGGG----GHHHHTCT--TCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCCSSHHHHHHHHHTTTTC
T ss_pred cCccccc-ccccc----ccchhhhh--hhhhhhhcccCcccccCcccc--cchhhhhhhhhcccccccccchhhcCCccc
Confidence 6642211 00000 00111110 112233333333333322211 12233444444332211100
Q ss_pred ----------------------CCCCCCCCcEEEEeCCcce--eeecccccCCCCCCCCCCcceeeecccccccccccCC
Q 044062 233 ----------------------SVGQLPSLKHLTVRGMSRV--KRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHG 288 (567)
Q Consensus 233 ----------------------~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 288 (567)
.+..+..+....+..+... ....... ...+.+++.+.+.++.... ..
T Consensus 252 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~l~~~~~~~~~-~~--- 322 (635)
T 4g8a_A 252 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL-----FNCLTNVSSFSLVSVTIER-VK--- 322 (635)
T ss_dssp EEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT-----TGGGTTCSEEEEESCEEEE-CG---
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh-----hhhhccccccccccccccc-cc---
Confidence 1112223333333221110 0000000 1224566666665543211 11
Q ss_pred CCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEEEecchhh-hhhcCCCCCcceEEecCCCCccc------cccCCC
Q 044062 289 SSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLVIQECKEL-LVSITSLPALCKLEIDGCKKVVW------RSATDH 361 (567)
Q Consensus 289 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~------~~~l~~ 361 (567)
.......++.|++.+| .+....+..++.|+.+.+..+... ......+++|+.+++++|..... .....+
T Consensus 323 ---~~~~~~~L~~L~l~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 398 (635)
T 4g8a_A 323 ---DFSYNFGWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS 398 (635)
T ss_dssp ---GGGSCCCCSEEEEESC-EESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSC
T ss_pred ---ccccchhhhhhhcccc-cccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhh
Confidence 1145678888998885 455344556788899988877532 22334578999999999876543 335668
Q ss_pred CCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHH
Q 044062 362 LGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQ 441 (567)
Q Consensus 362 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 441 (567)
|+.+++..+...... ..+..+++|+.+++.++...... +...+ ..+++++.+++++ +.+..+....+
T Consensus 399 L~~L~~~~~~~~~~~-----~~~~~l~~L~~l~l~~~~~~~~~--~~~~~-~~l~~l~~l~ls~-n~l~~~~~~~~---- 465 (635)
T 4g8a_A 399 LKYLDLSFNGVITMS-----SNFLGLEQLEHLDFQHSNLKQMS--EFSVF-LSLRNLIYLDISH-THTRVAFNGIF---- 465 (635)
T ss_dssp CCEEECCSCSEEEEC-----SCCTTCTTCCEEECTTSEEESTT--SSCTT-TTCTTCCEEECTT-SCCEECCTTTT----
T ss_pred hhhhhcccccccccc-----ccccccccccchhhhhccccccc--ccccc-ccccccccccccc-ccccccccccc----
Confidence 888887776644322 34567788999998887644443 33344 6788889999887 56665555444
Q ss_pred hhhhhccCceeEEEccCCCCCcc-cccCCCCCCCccEEEEccCCCCcccCCcCC--CCCccEEEEccCcccccccc-ccc
Q 044062 442 QQLCELSCRLEYLGLRSCEGLVK-LPQSSLGLNSLRDIEIYKCSSLVSFPEVAL--PSKLRKIRISSCDALKSLPE-AWM 517 (567)
Q Consensus 442 ~~l~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~l~~-~~~ 517 (567)
..+ +.|+.|++++|..... .|..+..+++|++|++++| .++.++...+ +++|++|++++| .++.+++ .+.
T Consensus 466 ~~~----~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~ 539 (635)
T 4g8a_A 466 NGL----SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYK 539 (635)
T ss_dssp TTC----TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGT
T ss_pred ccc----hhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHh
Confidence 344 8899999998875553 5677888899999999986 5777655433 688999999765 5777654 566
Q ss_pred cCCCCCccEEEcccccccccccccCcc---cccCeEEEeeCC
Q 044062 518 CDTNSSLEILSIKHCCSLTYIAEAQLP---LSLKQLVIHNCD 556 (567)
Q Consensus 518 ~l~~~~L~~L~l~~c~~l~~~~~~~~~---~~L~~l~~~~c~ 556 (567)
.+ ++|++|+++++ +++.++...+. ++|++|+++++|
T Consensus 540 ~l--~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 540 CL--NSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TC--TTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CC--CCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 67 88999999975 67777665543 688999988754
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.9e-29 Score=265.95 Aligned_cols=447 Identities=16% Similarity=0.082 Sum_probs=249.6
Q ss_pred ccceEEEecCCCCCccccccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhc-ccccccccccceeec
Q 044062 22 QRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKL-CADMGNLTKLHHLNN 99 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l-~~~~~~l~~L~~L~l 99 (567)
...+++++++++++.+|..+. ++|++|++++|.++.++ ..|..+++|++|++++| .++.+ |..|+++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEEC
Confidence 344666777776666665443 56677777777666654 45666777777777766 45554 344666677777777
Q ss_pred cCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhh
Q 044062 100 SNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETE 179 (567)
Q Consensus 100 ~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 179 (567)
++| .+..+|.. .+++|++|++..+.......+..+++++ +|+.|++++|....
T Consensus 108 s~N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~--------------~L~~L~L~~n~l~~---------- 160 (562)
T 3a79_B 108 SHN-RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT--------------KLTFLGLSAAKFRQ---------- 160 (562)
T ss_dssp TTS-CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT--------------TCCEEEEECSBCCT----------
T ss_pred CCC-cCCccCcc--ccccCCEEECCCCCccccCchHhhcccC--------------cccEEecCCCcccc----------
Confidence 766 56666655 5666666665554433222223455555 66666666542211
Q ss_pred hhhhccCCCCCCCcEEEEeecCC--CCC-cccccCCCCCccceEEEecCCCcccCC--CCCCCCCCcEEEEeCCcc----
Q 044062 180 MGVLDMLKPHKNLEQFGICGYGG--TKF-PTWLGDSSFSNLVTLKFEDCGMCTVLP--SVGQLPSLKHLTVRGMSR---- 250 (567)
Q Consensus 180 ~~~l~~l~~~~~L~~L~l~~~~~--~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~---- 250 (567)
..+..+..+ +|+.|++.++.. ... +..+..-....+ .+++++|.....++ .+..+++|+.+++++|..
T Consensus 161 -~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 237 (562)
T 3a79_B 161 -LDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237 (562)
T ss_dssp -TTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH
T ss_pred -Cchhhhhhc-eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccch
Confidence 112222222 347777777655 222 322221011122 44566666555444 245577788888877631
Q ss_pred eeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCC-----CcccEEE
Q 044062 251 VKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHL-----PALQMLV 325 (567)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l-----~~L~~L~ 325 (567)
+......+ ..+++|+.+++.++..-.... ...+. ....++|++|++++| .+.+.+|..+ ++|+.|.
T Consensus 238 l~~~~~~l------~~l~~L~~L~L~~~~l~~~~~-~~~~~-~~~~~~L~~L~l~~n-~l~~~ip~~~~~~~~~~L~~L~ 308 (562)
T 3a79_B 238 LMTFLSEL------TRGPTLLNVTLQHIETTWKCS-VKLFQ-FFWPRPVEYLNIYNL-TITERIDREEFTYSETALKSLM 308 (562)
T ss_dssp HHHHHHHH------HSCSSCEEEEEEEEEECHHHH-HHHHH-HHTTSSEEEEEEEEE-EECSCCCCCCCCCCSCSCCEEE
T ss_pred HHHHHHHH------hccCcceEEEecCCcCcHHHH-HHHHH-hhhcccccEEEEecc-Eeeccccchhhhcccccchhee
Confidence 11111111 126777777776543211000 00000 012358888888884 5665666544 6666666
Q ss_pred EecchhhhhhcC--------CCCCcceEEecCCCCcccc--ccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEE
Q 044062 326 IQECKELLVSIT--------SLPALCKLEIDGCKKVVWR--SATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEI 395 (567)
Q Consensus 326 i~~~~~l~~~~~--------~~~~L~~L~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 395 (567)
+.++......++ ..++|++|++++|...... ..+++|+.|++++|...+..+ ..+..+++|+.|++
T Consensus 309 ~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L 384 (562)
T 3a79_B 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF----QGCSTLKRLQTLIL 384 (562)
T ss_dssp EEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT----TTCCSCSSCCEEEC
T ss_pred hhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchh----hhhcccCCCCEEEC
Confidence 654432110111 1256888888888765442 567777777777776655444 45667777777777
Q ss_pred ccCCCcccccccc--CccccCCCCccEEEEcCCCCccc-cchhhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCC
Q 044062 396 KNIKNETYIWKSH--NGLLQDICSLKRLTIDSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGL 472 (567)
Q Consensus 396 ~~~~~l~~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 472 (567)
+++. ++.+ +. ..+ ..+++|++|++++ +.++. ++...+ ..+ ++|++|++++|..-..+|..+.
T Consensus 385 ~~N~-l~~~--~~~~~~~-~~l~~L~~L~l~~-N~l~~~~~~~~~----~~l----~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 385 QRNG-LKNF--FKVALMT-KNMSSLETLDVSL-NSLNSHAYDRTC----AWA----ESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp CSSC-CCBT--THHHHTT-TTCTTCCEEECTT-SCCBSCCSSCCC----CCC----TTCCEEECCSSCCCGGGGSSCC--
T ss_pred CCCC-cCCc--ccchhhh-cCCCCCCEEECCC-CcCCCccChhhh----cCc----ccCCEEECCCCCCCcchhhhhc--
Confidence 7765 4433 11 123 5667777777777 44444 444333 233 6777777777663334443332
Q ss_pred CCccEEEEccCCCCcccCCcC-CCCCccEEEEccCccccccccc-cccCCCCCccEEEccccc
Q 044062 473 NSLRDIEIYKCSSLVSFPEVA-LPSKLRKIRISSCDALKSLPEA-WMCDTNSSLEILSIKHCC 533 (567)
Q Consensus 473 ~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~-~~~l~~~~L~~L~l~~c~ 533 (567)
++|++|++++| .++.++... .+++|+.|++++ +.++.+|.. +..+ ++|++|++++++
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l--~~L~~L~l~~N~ 508 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRL--TSLQYIWLHDNP 508 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTC--TTCCCEECCSCC
T ss_pred CcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhcC--CCCCEEEecCCC
Confidence 57777777774 566666432 366777777755 346677765 5555 677777777754
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.7e-28 Score=264.51 Aligned_cols=479 Identities=16% Similarity=0.159 Sum_probs=305.5
Q ss_pred CCccccccchhhhhhh-hhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccccH-HHHccccCceeeccC
Q 044062 1 MLSNRLHGYLALSILP-KLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLED 77 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~ 77 (567)
||+|+|++ +|+ +|.++++|++|+|++|+++.++ .+|.++++|++|+|++|.++.+|. .|.++++|++|++++
T Consensus 59 Ls~N~i~~-----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 59 LSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred eeCCCCCC-----CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 57888887 554 7999999999999999999986 578999999999999999999965 589999999999999
Q ss_pred ccchhhcccc-cccccccceeeccCcccccc--ccccccccccccccCceEeccCCCCCccccccccccccc--------
Q 044062 78 CDRLEKLCAD-MGNLTKLHHLNNSNTYSLEE--MPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGT-------- 146 (567)
Q Consensus 78 ~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~-------- 146 (567)
| .++.+|.. |+++++|++|++++| .+.. .|..+.++++|++|++..+.... .....+..+..+...
T Consensus 134 N-~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 134 T-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp S-CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEECTT
T ss_pred C-cCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhccc
Confidence 9 78888765 899999999999999 6664 46678899999999876553221 122233333322111
Q ss_pred eeecc-----cccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCC---CcccccC--CCCCc
Q 044062 147 LEISK-----LENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTK---FPTWLGD--SSFSN 216 (567)
Q Consensus 147 ~~~~~-----~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~---~~~~~~~--~~~~~ 216 (567)
..+.. .....++.+++..+.. ... .....+..+..++...+....... +...... .....
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~-------~~~---~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFD-------SLN---VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCS-------SHH---HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred CcccccCcccccchhhhhhhhhcccc-------ccc---ccchhhcCCcccccccccccccccccccccccccccccccc
Confidence 01111 1112333444433100 000 011122233455555443322111 1111000 02334
Q ss_pred cceEEEecCCCcc----cCCCCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCc
Q 044062 217 LVTLKFEDCGMCT----VLPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEG 292 (567)
Q Consensus 217 L~~L~l~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 292 (567)
+....+..+.... ....+..+.+++.+.+.++......... .+.+++.|++.++..- ....
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~~-~~~~------ 345 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS--------YNFGWQHLELVNCKFG-QFPT------ 345 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGG--------SCCCCSEEEEESCEES-SCCC------
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccc--------cchhhhhhhccccccc-CcCc------
Confidence 4444444333221 1223455778888888887533322211 1678888888876321 1111
Q ss_pred ccCCCCccEEEEcCCCCcccCCC-CCCCcccEEEEecchhh-----hhhcCCCCCcceEEecCCCCccc---cccCCCCC
Q 044062 293 VERFPKLRELDILRCSKLQGTFP-EHLPALQMLVIQECKEL-----LVSITSLPALCKLEIDGCKKVVW---RSATDHLG 363 (567)
Q Consensus 293 ~~~~~~L~~L~l~~c~~l~~~~~-~~l~~L~~L~i~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~L~ 363 (567)
..++.|+.+.+..+ ....... ..+++|+.++++.+... ........+|+.+++..+..... ...+++|+
T Consensus 346 -~~l~~L~~l~l~~n-~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 423 (635)
T 4g8a_A 346 -LKLKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLE 423 (635)
T ss_dssp -CBCTTCCEEEEESC-CSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCC
T ss_pred -ccchhhhhcccccc-cCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccccc
Confidence 34677888888774 3332222 35788888888877532 22334567888888888776544 45667778
Q ss_pred cccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhh
Q 044062 364 SQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQ 443 (567)
Q Consensus 364 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 443 (567)
.+++.++....... ...+..+++++.++++++. +... ....+ ..++.|++|+++++.....+....+ ..
T Consensus 424 ~l~l~~~~~~~~~~---~~~~~~l~~l~~l~ls~n~-l~~~--~~~~~-~~~~~L~~L~Ls~N~~~~~~~~~~~----~~ 492 (635)
T 4g8a_A 424 HLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTH-TRVA--FNGIF-NGLSSLEVLKMAGNSFQENFLPDIF----TE 492 (635)
T ss_dssp EEECTTSEEESTTS---SCTTTTCTTCCEEECTTSC-CEEC--CTTTT-TTCTTCCEEECTTCEEGGGEECSCC----TT
T ss_pred chhhhhcccccccc---ccccccccccccccccccc-cccc--ccccc-ccchhhhhhhhhhcccccccCchhh----hh
Confidence 87777766544332 2446678888899888876 4444 33344 6778999999988665555544444 44
Q ss_pred hhhccCceeEEEccCCCCCccc-ccCCCCCCCccEEEEccCCCCcccCCcCC--CCCccEEEEccCcccccccc-ccccC
Q 044062 444 LCELSCRLEYLGLRSCEGLVKL-PQSSLGLNSLRDIEIYKCSSLVSFPEVAL--PSKLRKIRISSCDALKSLPE-AWMCD 519 (567)
Q Consensus 444 l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~l~~-~~~~l 519 (567)
+ ++|++|++++|. ++.+ |..+.++++|++|++++| .++.++...+ +++|+.|+++++ .++.+++ .+..+
T Consensus 493 l----~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l 565 (635)
T 4g8a_A 493 L----RNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHF 565 (635)
T ss_dssp C----TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCC
T ss_pred c----cccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhh
Confidence 4 889999999986 5554 667888999999999984 6777765433 688999999765 4665543 55555
Q ss_pred CCCCccEEEccccc
Q 044062 520 TNSSLEILSIKHCC 533 (567)
Q Consensus 520 ~~~~L~~L~l~~c~ 533 (567)
+ ++|++|+++++|
T Consensus 566 ~-~~L~~L~L~~Np 578 (635)
T 4g8a_A 566 P-SSLAFLNLTQND 578 (635)
T ss_dssp C-TTCCEEECTTCC
T ss_pred h-CcCCEEEeeCCC
Confidence 3 579999998744
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=7.7e-29 Score=270.06 Aligned_cols=235 Identities=16% Similarity=0.193 Sum_probs=174.5
Q ss_pred ccccccchhhhhhhhhhccccceEEEecCCCCCc------------------cccccc--cccccceeeccCCCcc-ccc
Q 044062 3 SNRLHGYLALSILPKLFKLQRLRVFSLRGYRISE------------------LPDSVG--DLRYLRHLNLSGTEIK-TLP 61 (567)
Q Consensus 3 ~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~------------------l~~~~~--~l~~L~~L~L~~~~l~-~lp 61 (567)
+|++++ +|+.|.++++|++|+|++|.++. +|+.+. .+++|++|+|++|.+. .+|
T Consensus 434 ~N~L~~-----IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP 508 (876)
T 4ecn_A 434 TNRITF-----ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508 (876)
T ss_dssp SCEEEE-----ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC
T ss_pred cCcccc-----hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh
Confidence 356665 78899999999999999999998 898877 9999999999999865 779
Q ss_pred HHHHccccCceeeccCccchh--hccccccccc-------ccceeeccCccccccccc--cccccccccccCceEeccCC
Q 044062 62 ESVNKLYNLHTLLLEDCDRLE--KLCADMGNLT-------KLHHLNNSNTYSLEEMPV--GIGKLTCLQTLSNFVVGKDS 130 (567)
Q Consensus 62 ~~~~~l~~L~~L~L~~~~~~~--~l~~~~~~l~-------~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~~~~~~~~~ 130 (567)
..++++++|++|+|++|+.+. .+|..+++++ +|+.|++++| .+..+|. .+.++++|+.|++..+...
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc-
Confidence 999999999999999995254 5888788776 9999999999 7779998 8999999999987655432
Q ss_pred CCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCC-CcEEEEeecCCCCCcccc
Q 044062 131 GLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKN-LEQFGICGYGGTKFPTWL 209 (567)
Q Consensus 131 ~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-L~~L~l~~~~~~~~~~~~ 209 (567)
.++.+..++ +|+.|++++|... . ....+..+++ |+.|++.++....+|.++
T Consensus 587 --~lp~~~~L~--------------~L~~L~Ls~N~l~--~----------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 587 --HLEAFGTNV--------------KLTDLKLDYNQIE--E----------IPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp --BCCCCCTTS--------------EESEEECCSSCCS--C----------CCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred --cchhhcCCC--------------cceEEECcCCccc--c----------chHHHhhccccCCEEECcCCCCCcCchhh
Confidence 223555555 7788888764322 1 2233555677 888888888877777666
Q ss_pred cCCCCCccceEEEecCCCcccCCCCC------CCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeeccc
Q 044062 210 GDSSFSNLVTLKFEDCGMCTVLPSVG------QLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVM 278 (567)
Q Consensus 210 ~~~~~~~L~~L~l~~~~~~~~~~~~~------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 278 (567)
......+|+.|++++|.+.+.+|.+. .+++|+.|++++|.. ..++..++.. +++|+.|+++++
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~-----l~~L~~L~Ls~N 707 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELFAT-----GSPISTIILSNN 707 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHT-----TCCCSEEECCSC
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-CccCHHHHcc-----CCCCCEEECCCC
Confidence 53334458888888888766554322 345788888877743 3444433222 677777777765
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.4e-28 Score=260.65 Aligned_cols=441 Identities=18% Similarity=0.134 Sum_probs=280.1
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccc-cHHHHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~ 78 (567)
+++|++++ +|..++ ++|++|++++|.++.++ .+|..+++|++|++++|.++.+ |..|..+++|++|++++|
T Consensus 38 ls~~~L~~-----ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 38 YSNRNLTH-----VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CTTSCCCS-----CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cCCCCCcc-----CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 35566664 777665 79999999999999886 6889999999999999999988 677999999999999999
Q ss_pred cchhhcccccccccccceeeccCcccccccc--ccccccccccccCceEeccCCCCCccccccccccccceeeccccccc
Q 044062 79 DRLEKLCADMGNLTKLHHLNNSNTYSLEEMP--VGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENEN 156 (567)
Q Consensus 79 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 156 (567)
.++.+|.. .+++|++|++++| .+..+| ..+.++++|+.|++..+.... ..+..++.+ +
T Consensus 111 -~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L------------~ 170 (562)
T 3a79_B 111 -RLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHL------------H 170 (562)
T ss_dssp -CCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTS------------C
T ss_pred -cCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc----Cchhhhhhc------------e
Confidence 68889876 8999999999999 777765 679999999999877654322 223444411 2
Q ss_pred ccceEEEeeecC-CCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCC-----ccc
Q 044062 157 LRELLLRWTCST-DGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGM-----CTV 230 (567)
Q Consensus 157 L~~l~l~~~~~~-~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~ 230 (567)
|+.+++++|... .+..+. .+..+.. ..+ .+.+.++.............+++|+.+++++|.. ...
T Consensus 171 L~~L~L~~n~l~~~~~~~~-------~l~~l~~-~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~ 241 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGETE-------SLQIPNT-TVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241 (562)
T ss_dssp EEEEEEEESSCCCCSSSCC-------EEEECCE-EEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH
T ss_pred eeEEEeecccccccccCcc-------cccccCc-ceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHH
Confidence 388888875331 111111 1111110 011 2333433332221111112577788888887641 111
Q ss_pred CCCCCCCCCCcEEEEeCCcceee----ecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcC
Q 044062 231 LPSVGQLPSLKHLTVRGMSRVKR----LGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILR 306 (567)
Q Consensus 231 ~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 306 (567)
++.+..+++|+.+++.++..... .+... ..++|++|+++++.................++.|+.+++..
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-------~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~ 314 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-------WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-------TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEE
T ss_pred HHHHhccCcceEEEecCCcCcHHHHHHHHHhh-------hcccccEEEEeccEeeccccchhhhcccccchheehhhccc
Confidence 22345567777777765532110 01000 03477777777663211111000000002334444444443
Q ss_pred CCCcccCCCC-------CCCcccEEEEecchhhhhhc-CCCCCcceEEecCCCCccc----cccCCCCCcccccccCCCc
Q 044062 307 CSKLQGTFPE-------HLPALQMLVIQECKELLVSI-TSLPALCKLEIDGCKKVVW----RSATDHLGSQNSVVCRDTS 374 (567)
Q Consensus 307 c~~l~~~~~~-------~l~~L~~L~i~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~~~ 374 (567)
+ .+ .+|. .-.+|++|++++|......+ ..+++|++|++++|..... ...+++|+.|++++|....
T Consensus 315 ~-~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 315 Q-VF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp C-CC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred c-ee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 2 22 2231 01457777777776443333 5677788888888776553 4567788888888876543
Q ss_pred --cccccCCCCCCCCCCcCeEEEccCCCccc-cccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCce
Q 044062 375 --NQVFLAGPLKPRIPKLEELEIKNIKNETY-IWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRL 451 (567)
Q Consensus 375 --~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L 451 (567)
..+ ..+..+++|+.|+++++. +.. + +...+ ..+++|++|++++| .++...... +|++|
T Consensus 392 ~~~~~----~~~~~l~~L~~L~l~~N~-l~~~~--~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~----------l~~~L 452 (562)
T 3a79_B 392 FFKVA----LMTKNMSSLETLDVSLNS-LNSHA--YDRTC-AWAESILVLNLSSN-MLTGSVFRC----------LPPKV 452 (562)
T ss_dssp TTHHH----HTTTTCTTCCEEECTTSC-CBSCC--SSCCC-CCCTTCCEEECCSS-CCCGGGGSS----------CCTTC
T ss_pred cccch----hhhcCCCCCCEEECCCCc-CCCcc--Chhhh-cCcccCCEEECCCC-CCCcchhhh----------hcCcC
Confidence 212 336778899999999987 443 5 44444 67899999999984 454322222 13689
Q ss_pred eEEEccCCCCCcccccCCCCCCCccEEEEccCCCCcccCCc--CCCCCccEEEEccCcc
Q 044062 452 EYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEV--ALPSKLRKIRISSCDA 508 (567)
Q Consensus 452 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~ 508 (567)
+.|++++|. ++.+|..+..+++|++|++++| .++.++.. ..+++|+.|++++++-
T Consensus 453 ~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 453 KVLDLHNNR-IMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SEEECCSSC-CCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CEEECCCCc-CcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 999999974 7889888889999999999985 67788764 3378899999988763
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.4e-28 Score=263.54 Aligned_cols=236 Identities=15% Similarity=0.197 Sum_probs=173.5
Q ss_pred ccccccchhhhhhhhhhccccceEEEecCCCCCc------------------cccccc--cccccceeeccCCCcc-ccc
Q 044062 3 SNRLHGYLALSILPKLFKLQRLRVFSLRGYRISE------------------LPDSVG--DLRYLRHLNLSGTEIK-TLP 61 (567)
Q Consensus 3 ~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~------------------l~~~~~--~l~~L~~L~L~~~~l~-~lp 61 (567)
+|+++| +|+.+.++++|++|++++|.++. +|+.+. ++++|++|++++|.+. .+|
T Consensus 192 ~n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p 266 (636)
T 4eco_A 192 SNNITF-----VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266 (636)
T ss_dssp SCEEEE-----ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred cCCCcc-----CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh
Confidence 456665 78899999999999999999998 999988 9999999999999876 679
Q ss_pred HHHHccccCceeeccCccchh--hcccccccc------cccceeeccCccccccccc--cccccccccccCceEeccCCC
Q 044062 62 ESVNKLYNLHTLLLEDCDRLE--KLCADMGNL------TKLHHLNNSNTYSLEEMPV--GIGKLTCLQTLSNFVVGKDSG 131 (567)
Q Consensus 62 ~~~~~l~~L~~L~L~~~~~~~--~l~~~~~~l------~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~~~~~~~~~~ 131 (567)
..++++++|++|++++|..++ .+|..++++ ++|++|++++| .+..+|. .+.++++|+.|++..+....
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g- 344 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEG- 344 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEE-
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCcc-
Confidence 999999999999999995254 588888887 99999999999 7789998 89999999999876554321
Q ss_pred CCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCC-CcEEEEeecCCCCCccccc
Q 044062 132 LRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKN-LEQFGICGYGGTKFPTWLG 210 (567)
Q Consensus 132 ~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-L~~L~l~~~~~~~~~~~~~ 210 (567)
.++.+..++ +|+.|++++|... .....+..+++ |+.|++.++....+|..+.
T Consensus 345 -~ip~~~~l~--------------~L~~L~L~~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 345 -KLPAFGSEI--------------KLASLNLAYNQIT------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp -ECCCCEEEE--------------EESEEECCSSEEE------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred -chhhhCCCC--------------CCCEEECCCCccc------------cccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence 112455555 7778877664222 12233555667 8888888888777777665
Q ss_pred CCCCCccceEEEecCCCcccCC-CCC-------CCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeeccc
Q 044062 211 DSSFSNLVTLKFEDCGMCTVLP-SVG-------QLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVM 278 (567)
Q Consensus 211 ~~~~~~L~~L~l~~~~~~~~~~-~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 278 (567)
...+++|+.|++++|.+.+..| .+. .+++|++|++++|.. ..++...+.. +++|++|+++++
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~-----l~~L~~L~Ls~N 467 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFST-----GSPLSSINLMGN 467 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHT-----TCCCSEEECCSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHcc-----CCCCCEEECCCC
Confidence 3344578888888888766554 243 556777777777643 3333332221 556666666554
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.5e-28 Score=251.89 Aligned_cols=402 Identities=20% Similarity=0.166 Sum_probs=215.9
Q ss_pred ccccceEEEecCCCCCccccccccccccceeeccCCCcc-cccHHHHccccC-------------ceeeccCccchhhcc
Q 044062 20 KLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIK-TLPESVNKLYNL-------------HTLLLEDCDRLEKLC 85 (567)
Q Consensus 20 ~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L-------------~~L~L~~~~~~~~l~ 85 (567)
+.++|++|++++|.++.+|+++.++++|++|++++|.+. .+|..++.+++| ++|++++| .++.+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCC
Confidence 458899999999999888988999999999999998887 678888877765 88888888 577776
Q ss_pred cccccccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEee
Q 044062 86 ADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWT 165 (567)
Q Consensus 86 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~ 165 (567)
.. .++|+.|++++| .+..+|..+ ++|+.|++..+.... ++.+. .+|+.|++++|
T Consensus 88 ~~---~~~L~~L~l~~n-~l~~lp~~~---~~L~~L~l~~n~l~~------l~~~~-------------~~L~~L~L~~n 141 (454)
T 1jl5_A 88 EL---PPHLESLVASCN-SLTELPELP---QSLKSLLVDNNNLKA------LSDLP-------------PLLEYLGVSNN 141 (454)
T ss_dssp SC---CTTCSEEECCSS-CCSSCCCCC---TTCCEEECCSSCCSC------CCSCC-------------TTCCEEECCSS
T ss_pred CC---cCCCCEEEccCC-cCCcccccc---CCCcEEECCCCccCc------ccCCC-------------CCCCEEECcCC
Confidence 52 368889999888 777777543 567777654443211 11110 17778888764
Q ss_pred ecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEE
Q 044062 166 CSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTV 245 (567)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 245 (567)
.... ++.+..+++|++|++.++....+|.. ..+|+.|++++|.+.+ +|.++.+++|++|++
T Consensus 142 ~l~~-------------lp~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l 202 (454)
T 1jl5_A 142 QLEK-------------LPELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYA 202 (454)
T ss_dssp CCSS-------------CCCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEEC
T ss_pred CCCC-------------CcccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc-CccccCCCCCCEEEC
Confidence 2211 22467778899999988887776653 4588999999887655 567888899999999
Q ss_pred eCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEE
Q 044062 246 RGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLV 325 (567)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~ 325 (567)
++|.. ..++. ..++|++|+++++. +.... .+..+++|++|++++ +.++ .+|..+++|+.|+
T Consensus 203 ~~N~l-~~l~~---------~~~~L~~L~l~~n~-l~~lp------~~~~l~~L~~L~l~~-N~l~-~l~~~~~~L~~L~ 263 (454)
T 1jl5_A 203 DNNSL-KKLPD---------LPLSLESIVAGNNI-LEELP------ELQNLPFLTTIYADN-NLLK-TLPDLPPSLEALN 263 (454)
T ss_dssp CSSCC-SSCCC---------CCTTCCEEECCSSC-CSSCC------CCTTCTTCCEEECCS-SCCS-SCCSCCTTCCEEE
T ss_pred CCCcC-CcCCC---------CcCcccEEECcCCc-CCccc------ccCCCCCCCEEECCC-CcCC-cccccccccCEEE
Confidence 88853 32221 14688899998763 33222 136788899999988 4676 4666678888888
Q ss_pred EecchhhhhhcCCCCCcceEEecCCCCccccccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccc
Q 044062 326 IQECKELLVSITSLPALCKLEIDGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIW 405 (567)
Q Consensus 326 i~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 405 (567)
+++|.... .-..+++|+.|++++|.........++|+.|++++|...+ ++ ...++|+.|+++++. +..+
T Consensus 264 l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~-------~~~~~L~~L~Ls~N~-l~~l- 332 (454)
T 1jl5_A 264 VRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LC-------DLPPSLEELNVSNNK-LIEL- 332 (454)
T ss_dssp CCSSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-EC-------CCCTTCCEEECCSSC-CSCC-
T ss_pred CCCCcccc-cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-cc-------CCcCcCCEEECCCCc-cccc-
Confidence 88875321 1123467888888888755432333577777777765433 11 111467777777765 4433
Q ss_pred cccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCcc---cccCCCCCCCccEEEEcc
Q 044062 406 KSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVK---LPQSSLGLNSLRDIEIYK 482 (567)
Q Consensus 406 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~---~~~~~~~~~~L~~L~l~~ 482 (567)
+. .+++|++|++++ +.++.++. .. ++|++|++++|. ++. +|..+ ..|. .
T Consensus 333 -p~-----~~~~L~~L~L~~-N~l~~lp~-~l-----------~~L~~L~L~~N~-l~~l~~ip~~l------~~L~--~ 384 (454)
T 1jl5_A 333 -PA-----LPPRLERLIASF-NHLAEVPE-LP-----------QNLKQLHVEYNP-LREFPDIPESV------EDLR--M 384 (454)
T ss_dssp -CC-----CCTTCCEEECCS-SCCSCCCC-CC-----------TTCCEEECCSSC-CSSCCCCCTTC------CEEE--C
T ss_pred -cc-----cCCcCCEEECCC-Cccccccc-hh-----------hhccEEECCCCC-CCcCCCChHHH------Hhhh--h
Confidence 21 246777777776 45555554 22 677777777765 333 33322 2222 2
Q ss_pred CCCCcccCCcCCCCCccEEEEccCccccccccccccCCCCCccEEEccccc
Q 044062 483 CSSLVSFPEVALPSKLRKIRISSCDALKSLPEAWMCDTNSSLEILSIKHCC 533 (567)
Q Consensus 483 c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~~~L~~L~l~~c~ 533 (567)
+.....++. .+++|+.|+++++. ++.++. ++ ++++.|.+.+|.
T Consensus 385 n~~~~~i~~--~~~~L~~L~ls~N~-l~~~~~----iP-~sl~~L~~~~~~ 427 (454)
T 1jl5_A 385 NSHLAEVPE--LPQNLKQLHVETNP-LREFPD----IP-ESVEDLRMNSER 427 (454)
T ss_dssp CC-------------------------------------------------
T ss_pred ccccccccc--ccCcCCEEECCCCc-CCcccc----ch-hhHhheeCcCcc
Confidence 222333332 24778888886644 443221 22 457777777654
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1e-27 Score=245.67 Aligned_cols=396 Identities=18% Similarity=0.171 Sum_probs=195.9
Q ss_pred cccccceeeccCCCcccccHHHHccccCceeeccCccchhhccccccccccc-------------ceeeccCcccccccc
Q 044062 43 DLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKL-------------HHLNNSNTYSLEEMP 109 (567)
Q Consensus 43 ~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L-------------~~L~l~~~~~~~~lp 109 (567)
..++|++|++++|.+..+|..++++++|++|++++|...+.+|..++++++| ++|++++| .+..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCC
Confidence 3588999999999999999999999999999999996666899999998876 66666666 455554
Q ss_pred ccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCCCC
Q 044062 110 VGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPH 189 (567)
Q Consensus 110 ~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~ 189 (567)
.. .++|+ .|++++|.... .+ ...
T Consensus 88 ~~---~~~L~---------------------------------------~L~l~~n~l~~--lp-------------~~~ 110 (454)
T 1jl5_A 88 EL---PPHLE---------------------------------------SLVASCNSLTE--LP-------------ELP 110 (454)
T ss_dssp SC---CTTCS---------------------------------------EEECCSSCCSS--CC-------------CCC
T ss_pred CC---cCCCC---------------------------------------EEEccCCcCCc--cc-------------ccc
Confidence 42 13344 44443321110 00 012
Q ss_pred CCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCC
Q 044062 190 KNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPC 269 (567)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (567)
++|+.|++.++....++.. .++|+.|++++|.+.+ +|.++.+++|++|++++|. ++.++.. +++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~-l~~lp~~---------~~~ 174 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS-LKKLPDL---------PPS 174 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSCCCCC---------CTT
T ss_pred CCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc-CcccCCC---------ccc
Confidence 4666666666655554431 2467777777766544 5566667777777777663 2322211 456
Q ss_pred cceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEEEecchhh-hhhcCCCCCcceEEec
Q 044062 270 LETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLVIQECKEL-LVSITSLPALCKLEID 348 (567)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~l-~~~~~~~~~L~~L~l~ 348 (567)
|++|+++++. ++... .+..+++|++|++++| .++ .+|...++|++|++++|... ...+..+++|++|+++
T Consensus 175 L~~L~L~~n~-l~~l~------~~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 175 LEFIAAGNNQ-LEELP------ELQNLPFLTAIYADNN-SLK-KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245 (454)
T ss_dssp CCEEECCSSC-CSSCC------CCTTCTTCCEEECCSS-CCS-SCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred ccEEECcCCc-CCcCc------cccCCCCCCEEECCCC-cCC-cCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECC
Confidence 7777776652 22211 1256677777777773 555 35555567777777776421 1134566777777777
Q ss_pred CCCCccccccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCC
Q 044062 349 GCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPK 428 (567)
Q Consensus 349 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 428 (567)
+|.........++|+.|++++|...+ ++ ..+++|+.|+++++. +..+ + .+ .++|++|++++ +.
T Consensus 246 ~N~l~~l~~~~~~L~~L~l~~N~l~~-l~-------~~~~~L~~L~ls~N~-l~~l--~--~~---~~~L~~L~l~~-N~ 308 (454)
T 1jl5_A 246 NNLLKTLPDLPPSLEALNVRDNYLTD-LP-------ELPQSLTFLDVSENI-FSGL--S--EL---PPNLYYLNASS-NE 308 (454)
T ss_dssp SSCCSSCCSCCTTCCEEECCSSCCSC-CC-------CCCTTCCEEECCSSC-CSEE--S--CC---CTTCCEEECCS-SC
T ss_pred CCcCCcccccccccCEEECCCCcccc-cC-------cccCcCCEEECcCCc-cCcc--c--Cc---CCcCCEEECcC-Cc
Confidence 77655444445677777777776433 22 223677778777765 4443 1 11 25777777776 45
Q ss_pred ccccchhhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCCCccEEEEccCCCCcccCCcCCCCCccEEEEccCcc
Q 044062 429 LQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFPEVALPSKLRKIRISSCDA 508 (567)
Q Consensus 429 l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~ 508 (567)
++.++. .|++|++|+++++. ++.+|.. +++|++|++++| .++.++. .+++|+.|++++|.-
T Consensus 309 l~~i~~------------~~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 309 IRSLCD------------LPPSLEELNVSNNK-LIELPAL---PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CSEECC------------CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCC
T ss_pred CCcccC------------CcCcCCEEECCCCc-ccccccc---CCcCCEEECCCC-ccccccc--hhhhccEEECCCCCC
Confidence 554431 12577778777754 5556543 467777888774 5666665 567778888766543
Q ss_pred cc--ccccccccCCC-----------CCccEEEcccccccccccccCcccccCeEEEeeCCCCCc
Q 044062 509 LK--SLPEAWMCDTN-----------SSLEILSIKHCCSLTYIAEAQLPLSLKQLVIHNCDNMRT 560 (567)
Q Consensus 509 l~--~l~~~~~~l~~-----------~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~~~~c~~l~~ 560 (567)
-. .+|..+..+.. ++|++|+++++ .++.++ .++++++.+.+.+|.--..
T Consensus 370 ~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~--~iP~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFP--DIPESVEDLRMNSERVVDP 431 (454)
T ss_dssp SSCCCCCTTCCEEECCC------------------------------------------------
T ss_pred CcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCCccc--cchhhHhheeCcCcccCCc
Confidence 22 34444333210 67999999985 455443 4567888888877654433
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.3e-26 Score=237.73 Aligned_cols=347 Identities=19% Similarity=0.288 Sum_probs=196.2
Q ss_pred hccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceee
Q 044062 19 FKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLN 98 (567)
Q Consensus 19 ~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ 98 (567)
..+++++.|+++++.+..+| .+..+++|++|++++|.++.+|. +..+++|++|++++| .+..++. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEE
Confidence 34678999999999988885 57889999999999999998876 899999999999998 6777766 89999999999
Q ss_pred ccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchh
Q 044062 99 NSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAET 178 (567)
Q Consensus 99 l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 178 (567)
+++| .+..++. +.++++|++|++..+.... +..+..++ +|+.+++.. ...
T Consensus 119 L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~---~~~~~~l~--------------~L~~L~l~~--~~~--------- 168 (466)
T 1o6v_A 119 LFNN-QITDIDP-LKNLTNLNRLELSSNTISD---ISALSGLT--------------SLQQLSFGN--QVT--------- 168 (466)
T ss_dssp CCSS-CCCCCGG-GTTCTTCSEEEEEEEEECC---CGGGTTCT--------------TCSEEEEEE--SCC---------
T ss_pred CCCC-CCCCChH-HcCCCCCCEEECCCCccCC---ChhhccCC--------------cccEeecCC--ccc---------
Confidence 9999 7777765 7788888888766654322 22233333 455555532 100
Q ss_pred hhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeecccc
Q 044062 179 EMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGSEF 258 (567)
Q Consensus 179 ~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 258 (567)
....+..+++|+.|++.++....++. +. .+++|+.|++++|.+.+..+ ++.+++|++|++++|. +..++
T Consensus 169 ---~~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~--- 237 (466)
T 1o6v_A 169 ---DLKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKDIG--- 237 (466)
T ss_dssp ---CCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCG---
T ss_pred ---CchhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCccccccc-ccccCCCCEEECCCCC-cccch---
Confidence 01113334445555554444433322 11 34444444444444322221 3334444444444432 11111
Q ss_pred cCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCC-CCCCcccEEEEecchhh-hhhc
Q 044062 259 YGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFP-EHLPALQMLVIQECKEL-LVSI 336 (567)
Q Consensus 259 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~l~~L~~L~i~~~~~l-~~~~ 336 (567)
.+..+++|++|++++| .+.+..+ ..+++|++|++++|... ...+
T Consensus 238 ---------------------------------~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 283 (466)
T 1o6v_A 238 ---------------------------------TLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISPL 283 (466)
T ss_dssp ---------------------------------GGGGCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCCCGGG
T ss_pred ---------------------------------hhhcCCCCCEEECCCC-ccccchhhhcCCCCCEEECCCCccCccccc
Confidence 1134455555555553 3331111 12333333333333210 0013
Q ss_pred CCCCCcceEEecCCCCccccccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCC
Q 044062 337 TSLPALCKLEIDGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDIC 416 (567)
Q Consensus 337 ~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 416 (567)
..+++|+.|++++|. ..+..+ +..+++|+.|++++|. +... .. + ..++
T Consensus 284 ~~l~~L~~L~L~~n~--------------------l~~~~~------~~~l~~L~~L~L~~n~-l~~~--~~--~-~~l~ 331 (466)
T 1o6v_A 284 AGLTALTNLELNENQ--------------------LEDISP------ISNLKNLTYLTLYFNN-ISDI--SP--V-SSLT 331 (466)
T ss_dssp TTCTTCSEEECCSSC--------------------CSCCGG------GGGCTTCSEEECCSSC-CSCC--GG--G-GGCT
T ss_pred cCCCccCeEEcCCCc--------------------ccCchh------hcCCCCCCEEECcCCc-CCCc--hh--h-ccCc
Confidence 334444455544443 222111 4456677777777775 4333 21 3 5667
Q ss_pred CccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCCCccEEEEccCCCCcccC
Q 044062 417 SLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCSSLVSFP 490 (567)
Q Consensus 417 ~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 490 (567)
+|++|++++| .++.+. .+ ..+ ++|+.|++++|. ++.++. +..+++|++|++++| .+..+|
T Consensus 332 ~L~~L~l~~n-~l~~~~--~l----~~l----~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~~~~~p 391 (466)
T 1o6v_A 332 KLQRLFFYNN-KVSDVS--SL----ANL----TNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ-AWTNAP 391 (466)
T ss_dssp TCCEEECCSS-CCCCCG--GG----TTC----TTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE-EEECCC
T ss_pred cCCEeECCCC-ccCCch--hh----ccC----CCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC-cccCCc
Confidence 7777777774 555442 22 334 778888888776 444432 677778888888875 344433
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.4e-26 Score=233.75 Aligned_cols=228 Identities=20% Similarity=0.138 Sum_probs=141.4
Q ss_pred hhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccc
Q 044062 14 ILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTK 93 (567)
Q Consensus 14 ~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~ 93 (567)
.+..+.++++|++|++++|.++.+| ++..+++|++|++++|.++.+| ++.+++|++|++++| .++.++ ++++++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTK 107 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTT
T ss_pred cccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCc
Confidence 3446777888888888888887775 6778888888888888888775 777888888888887 566664 778888
Q ss_pred cceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCC
Q 044062 94 LHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSS 173 (567)
Q Consensus 94 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 173 (567)
|++|++++| .+..+| +.++++|+.|++..+.. +.+
T Consensus 108 L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l-----------------------------~~l------------- 142 (457)
T 3bz5_A 108 LTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNTL-----------------------------TEI------------- 142 (457)
T ss_dssp CCEEECCSS-CCSCCC--CTTCTTCCEEECTTSCC-----------------------------SCC-------------
T ss_pred CCEEECCCC-cCCeec--CCCCCcCCEEECCCCcc-----------------------------cee-------------
Confidence 888888888 666654 56666666664332211 000
Q ss_pred ccchhhhhhhccCCCCCCCcEEEEeecC-CCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCccee
Q 044062 174 REAETEMGVLDMLKPHKNLEQFGICGYG-GTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVK 252 (567)
Q Consensus 174 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 252 (567)
.+..+++|+.|++.++. ...++ +. .+++|+.|++++|.+.+ ++ ++.+++|++|++++|. +.
T Consensus 143 -----------~l~~l~~L~~L~l~~n~~~~~~~--~~--~l~~L~~L~ls~n~l~~-l~-l~~l~~L~~L~l~~N~-l~ 204 (457)
T 3bz5_A 143 -----------DVSHNTQLTELDCHLNKKITKLD--VT--PQTQLTTLDCSFNKITE-LD-VSQNKLLNRLNCDTNN-IT 204 (457)
T ss_dssp -----------CCTTCTTCCEEECTTCSCCCCCC--CT--TCTTCCEEECCSSCCCC-CC-CTTCTTCCEEECCSSC-CS
T ss_pred -----------ccccCCcCCEEECCCCCcccccc--cc--cCCcCCEEECCCCccce-ec-cccCCCCCEEECcCCc-CC
Confidence 13334566666666552 22221 11 56777777777776544 33 6667777777777764 23
Q ss_pred eecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEEEe
Q 044062 253 RLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLVIQ 327 (567)
Q Consensus 253 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~ 327 (567)
.++ +..+++|+.|+++++. ++... +..+++|++|++++ +.+++..+..+++|+.|+++
T Consensus 205 ~~~--------l~~l~~L~~L~Ls~N~-l~~ip-------~~~l~~L~~L~l~~-N~l~~~~~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 205 KLD--------LNQNIQLTFLDCSSNK-LTEID-------VTPLTQLTYFDCSV-NPLTELDVSTLSKLTTLHCI 262 (457)
T ss_dssp CCC--------CTTCTTCSEEECCSSC-CSCCC-------CTTCTTCSEEECCS-SCCSCCCCTTCTTCCEEECT
T ss_pred eec--------cccCCCCCEEECcCCc-ccccC-------ccccCCCCEEEeeC-CcCCCcCHHHCCCCCEEecc
Confidence 221 2226777777776653 22211 25566777777766 35554333445555555544
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=8.5e-26 Score=233.45 Aligned_cols=328 Identities=18% Similarity=0.215 Sum_probs=236.6
Q ss_pred hhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccc
Q 044062 14 ILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTK 93 (567)
Q Consensus 14 ~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~ 93 (567)
+| .+..+++|++|++++|.++.+++ +..+++|++|++++|.+..++. +..+++|++|++++| .++.++. ++++++
T Consensus 61 l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~ 135 (466)
T 1o6v_A 61 ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTN 135 (466)
T ss_dssp CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTT
T ss_pred Cc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCC
Confidence 44 58899999999999999998866 9999999999999999998876 999999999999999 7777765 999999
Q ss_pred cceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCC
Q 044062 94 LHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSS 173 (567)
Q Consensus 94 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 173 (567)
|++|++++| .+..++ .+.++++|+.|++.. ....+..+..++ +|+.|+++++....
T Consensus 136 L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~----~~~~~~~~~~l~--------------~L~~L~l~~n~l~~---- 191 (466)
T 1o6v_A 136 LNRLELSSN-TISDIS-ALSGLTSLQQLSFGN----QVTDLKPLANLT--------------TLERLDISSNKVSD---- 191 (466)
T ss_dssp CSEEEEEEE-EECCCG-GGTTCTTCSEEEEEE----SCCCCGGGTTCT--------------TCCEEECCSSCCCC----
T ss_pred CCEEECCCC-ccCCCh-hhccCCcccEeecCC----cccCchhhccCC--------------CCCEEECcCCcCCC----
Confidence 999999999 777776 488999999998642 122233456666 88999998753221
Q ss_pred ccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceee
Q 044062 174 REAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKR 253 (567)
Q Consensus 174 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 253 (567)
+..+..+++|++|++.++.....+. +. .+++|+.|++++|.+.. ++.+..+++|++|++++|.. ..
T Consensus 192 ---------~~~l~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l-~~ 257 (466)
T 1o6v_A 192 ---------ISVLAKLTNLESLIATNNQISDITP-LG--ILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQI-SN 257 (466)
T ss_dssp ---------CGGGGGCTTCSEEECCSSCCCCCGG-GG--GCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC-CC
T ss_pred ---------ChhhccCCCCCEEEecCCccccccc-cc--ccCCCCEEECCCCCccc-chhhhcCCCCCEEECCCCcc-cc
Confidence 2235667899999999998877755 32 58999999999998544 45677899999999999853 33
Q ss_pred ecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEEEecchhhh
Q 044062 254 LGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLVIQECKELL 333 (567)
Q Consensus 254 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~l~ 333 (567)
.+. + ..+++|++|+++++. +..... +..+++|++|++++| .+.+..+
T Consensus 258 ~~~-~------~~l~~L~~L~l~~n~-l~~~~~------~~~l~~L~~L~L~~n-~l~~~~~------------------ 304 (466)
T 1o6v_A 258 LAP-L------SGLTKLTELKLGANQ-ISNISP------LAGLTALTNLELNEN-QLEDISP------------------ 304 (466)
T ss_dssp CGG-G------TTCTTCSEEECCSSC-CCCCGG------GTTCTTCSEEECCSS-CCSCCGG------------------
T ss_pred chh-h------hcCCCCCEEECCCCc-cCcccc------ccCCCccCeEEcCCC-cccCchh------------------
Confidence 322 1 227888888888763 222211 256778888888774 4542221
Q ss_pred hhcCCCCCcceEEecCCCCccc--cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCcc
Q 044062 334 VSITSLPALCKLEIDGCKKVVW--RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGL 411 (567)
Q Consensus 334 ~~~~~~~~L~~L~l~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 411 (567)
+..+++|+.|++++|..... ...+++|+.|++++|...+.. .+..+++|+.|++++|. +... .. +
T Consensus 305 --~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~-l~~~--~~--~ 371 (466)
T 1o6v_A 305 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS------SLANLTNINWLSAGHNQ-ISDL--TP--L 371 (466)
T ss_dssp --GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSC-CCBC--GG--G
T ss_pred --hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch------hhccCCCCCEEeCCCCc-cCcc--ch--h
Confidence 33445555555555544333 345566666666666443321 25678889999998887 4443 22 3
Q ss_pred ccCCCCccEEEEcCCCCcccc
Q 044062 412 LQDICSLKRLTIDSCPKLQSL 432 (567)
Q Consensus 412 ~~~~~~L~~L~l~~c~~l~~~ 432 (567)
..+++|++|++++| .++.+
T Consensus 372 -~~l~~L~~L~l~~n-~~~~~ 390 (466)
T 1o6v_A 372 -ANLTRITQLGLNDQ-AWTNA 390 (466)
T ss_dssp -TTCTTCCEEECCCE-EEECC
T ss_pred -hcCCCCCEEeccCC-cccCC
Confidence 67889999999884 44444
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.9e-25 Score=230.53 Aligned_cols=110 Identities=25% Similarity=0.305 Sum_probs=65.4
Q ss_pred CCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCC
Q 044062 383 LKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGL 462 (567)
Q Consensus 383 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l 462 (567)
.+..+++|++|+++++. +..+ ....+ ..+++|++|++++ +.++.+....+ ..+ ++|++|++++|. +
T Consensus 294 ~~~~l~~L~~L~Ls~n~-l~~~--~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~~----~~l----~~L~~L~Ls~N~-l 359 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNE-INKI--DDNAF-WGLTHLLKLNLSQ-NFLGSIDSRMF----ENL----DKLEVLDLSYNH-I 359 (455)
T ss_dssp TTTTCTTCCEEECTTSC-CCEE--CTTTT-TTCTTCCEEECCS-SCCCEECGGGG----TTC----TTCCEEECCSSC-C
T ss_pred hcccCCCCCEEECCCCc-cccc--ChhHh-cCcccCCEEECCC-CccCCcChhHh----cCc----ccCCEEECCCCc-c
Confidence 34556666666666665 4443 33344 5666777777766 45555544443 334 677777777765 3
Q ss_pred ccc-ccCCCCCCCccEEEEccCCCCcccCCcC--CCCCccEEEEccCc
Q 044062 463 VKL-PQSSLGLNSLRDIEIYKCSSLVSFPEVA--LPSKLRKIRISSCD 507 (567)
Q Consensus 463 ~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~ 507 (567)
+.+ |..+..+++|++|++++| .++.++... .+++|+.|++++++
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 433 556667777777777763 455555432 25677777776654
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.6e-25 Score=229.57 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=59.2
Q ss_pred eEEEecCCCCCccccccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhcc-cccccccccceeeccCc
Q 044062 25 RVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLC-ADMGNLTKLHHLNNSNT 102 (567)
Q Consensus 25 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~l~~~ 102 (567)
+.++.++++++.+|. +. ++|++|+|++|.++.+ |..++.+++|++|++++|.....++ ..|+++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 345666666666655 32 5677777777777765 5567777777777777763333443 33677777777777777
Q ss_pred cccccc-cccccccccccccCc
Q 044062 103 YSLEEM-PVGIGKLTCLQTLSN 123 (567)
Q Consensus 103 ~~~~~l-p~~~~~l~~L~~L~~ 123 (567)
.+..+ |..+.++++|++|++
T Consensus 90 -~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 90 -QFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp -TTCEECTTTTTTCTTCCEEEC
T ss_pred -ccCccChhhccCcccCCEEeC
Confidence 44444 445666666666643
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.5e-25 Score=229.86 Aligned_cols=110 Identities=21% Similarity=0.217 Sum_probs=94.8
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDR 80 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 80 (567)
+++|++++ +| .+..+++|++|++++|+++.++ +..+++|++|++++|.++.+| ++.+++|++|++++| .
T Consensus 49 Ls~n~l~~-----~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~ 117 (457)
T 3bz5_A 49 CHNSSITD-----MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-K 117 (457)
T ss_dssp CCSSCCCC-----CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS-C
T ss_pred ccCCCccc-----Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC-c
Confidence 56778877 44 7999999999999999999885 889999999999999999886 889999999999999 6
Q ss_pred hhhcccccccccccceeeccCccccccccccccccccccccCceEe
Q 044062 81 LEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVV 126 (567)
Q Consensus 81 ~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~ 126 (567)
++.+| ++.+++|++|++++| .+..++ ++++++|+.|++..+
T Consensus 118 l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 118 LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTC
T ss_pred CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCC
Confidence 77775 899999999999999 777763 777888888865443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=2.6e-24 Score=213.65 Aligned_cols=302 Identities=16% Similarity=0.199 Sum_probs=180.4
Q ss_pred hhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccce
Q 044062 17 KLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHH 96 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 96 (567)
.+..+++|++|+++++.+..++ .+..+++|++|++++|.++.+|. +..+++|++|++++| .++.++ .++++++|++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRE 114 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSE
T ss_pred cchhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCE
Confidence 4567889999999999998874 58889999999999999998876 889999999999998 677775 5899999999
Q ss_pred eeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccc
Q 044062 97 LNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREA 176 (567)
Q Consensus 97 L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 176 (567)
|++++| .+..++. +.++++|+.|++..+.. ...+..+..++ +|+.++++.+....
T Consensus 115 L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~--~~~~~~~~~l~--------------~L~~L~l~~~~~~~------- 169 (347)
T 4fmz_A 115 LYLNED-NISDISP-LANLTKMYSLNLGANHN--LSDLSPLSNMT--------------GLNYLTVTESKVKD------- 169 (347)
T ss_dssp EECTTS-CCCCCGG-GTTCTTCCEEECTTCTT--CCCCGGGTTCT--------------TCCEEECCSSCCCC-------
T ss_pred EECcCC-cccCchh-hccCCceeEEECCCCCC--cccccchhhCC--------------CCcEEEecCCCcCC-------
Confidence 999999 7777766 77888888887544421 11222233333 55555554421111
Q ss_pred hhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeecc
Q 044062 177 ETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGS 256 (567)
Q Consensus 177 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 256 (567)
...+..+++|++|++.++....++. +. .+++|+.+++++|......+ +..+++|++|++++|. +...+.
T Consensus 170 ------~~~~~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~ 238 (347)
T 4fmz_A 170 ------VTPIANLTDLYSLSLNYNQIEDISP-LA--SLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSP 238 (347)
T ss_dssp ------CGGGGGCTTCSEEECTTSCCCCCGG-GG--GCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG
T ss_pred ------chhhccCCCCCEEEccCCccccccc-cc--CCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcc
Confidence 0113334555555555555544443 11 35555555555554332222 4445555555555553 222221
Q ss_pred cccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEEEecchhhhhhc
Q 044062 257 EFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLVIQECKELLVSI 336 (567)
Q Consensus 257 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~l~~~~ 336 (567)
. ..+++|++|+++++. +... ..+..+++|++|++++| .+++ + ..+
T Consensus 239 --~-----~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~l~~n-~l~~-~-------------------~~~ 283 (347)
T 4fmz_A 239 --L-----ANLSQLTWLEIGTNQ-ISDI------NAVKDLTKLKMLNVGSN-QISD-I-------------------SVL 283 (347)
T ss_dssp --G-----TTCTTCCEEECCSSC-CCCC------GGGTTCTTCCEEECCSS-CCCC-C-------------------GGG
T ss_pred --h-----hcCCCCCEEECCCCc-cCCC------hhHhcCCCcCEEEccCC-ccCC-C-------------------hhh
Confidence 1 114555555554432 1111 01133444555555443 3321 1 234
Q ss_pred CCCCCcceEEecCCCCccc----cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCC
Q 044062 337 TSLPALCKLEIDGCKKVVW----RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIK 399 (567)
Q Consensus 337 ~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 399 (567)
..+++|+.|++++|..... ...+++|+.|++++|...+..+ +..+++|+.|++++|+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC-
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC------hhhhhccceeehhhhc
Confidence 4566667777766665433 4456677777777776544333 5667788888888775
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.1e-23 Score=209.25 Aligned_cols=78 Identities=22% Similarity=0.392 Sum_probs=57.3
Q ss_pred cccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeeccCccccccccccccccccc
Q 044062 39 DSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCL 118 (567)
Q Consensus 39 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 118 (567)
..+..+++|+.|+++++.+..+|. +..+++|++|++++| .++.++. ++++++|++|++++| .+..++ .+.++++|
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L 112 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNL 112 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTC
T ss_pred ccchhcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcC
Confidence 345678888899998888888754 788888888888888 6777766 888888888888888 555543 24444444
Q ss_pred ccc
Q 044062 119 QTL 121 (567)
Q Consensus 119 ~~L 121 (567)
++|
T Consensus 113 ~~L 115 (347)
T 4fmz_A 113 REL 115 (347)
T ss_dssp SEE
T ss_pred CEE
Confidence 444
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=218.60 Aligned_cols=106 Identities=25% Similarity=0.347 Sum_probs=57.7
Q ss_pred hhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhcccc-cc
Q 044062 13 SILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCAD-MG 89 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~-~~ 89 (567)
.+|..++ +++++|++++|.++.++ ..|..+++|++|+|++|.++.+ |..|..+++|++|+|++| .++.+|.. |+
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 101 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFT 101 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSST
T ss_pred cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCccccc
Confidence 3454443 35666666666666552 4556666666666666666554 445666666666666665 45555543 45
Q ss_pred cccccceeeccCccccccc-cccccccccccccC
Q 044062 90 NLTKLHHLNNSNTYSLEEM-PVGIGKLTCLQTLS 122 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~ 122 (567)
++++|++|++++| .+..+ |..+.++++|+.|+
T Consensus 102 ~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 102 GLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCCEEECCCC-ccccCChhHccccccCCEEE
Confidence 6666666666666 33333 22344444444443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=6.3e-24 Score=214.36 Aligned_cols=104 Identities=25% Similarity=0.303 Sum_probs=46.5
Q ss_pred hhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhcccc-ccccccc
Q 044062 18 LFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKL 94 (567)
Q Consensus 18 ~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L 94 (567)
+..+++|++|++++|.++.++ .+|..+++|++|++++|.++.+ |..++.+++|++|++++| .++.+|.. ++++++|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCC
Confidence 344444444444444444433 2344444444444444444444 222444444444444444 34444433 2444444
Q ss_pred ceeeccCccccccccc-cccccccccccCc
Q 044062 95 HHLNNSNTYSLEEMPV-GIGKLTCLQTLSN 123 (567)
Q Consensus 95 ~~L~l~~~~~~~~lp~-~~~~l~~L~~L~~ 123 (567)
++|++++| .+..++. .+.++++|+.|++
T Consensus 144 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 144 TTLSMSNN-NLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp CEEECCSS-CCCBCCTTTTSSCTTCCEEEC
T ss_pred cEEECCCC-ccCccChhhccCCCCCCEEEC
Confidence 44444444 3333322 2444444444443
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=6.2e-23 Score=212.92 Aligned_cols=309 Identities=18% Similarity=0.192 Sum_probs=191.4
Q ss_pred ceEEEecCCCCCccccccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhc-ccccccccccceeeccC
Q 044062 24 LRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKL-CADMGNLTKLHHLNNSN 101 (567)
Q Consensus 24 L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l-~~~~~~l~~L~~L~l~~ 101 (567)
-+.++.++++++.+|..+. +++++|+|++|.++.+ |..|..+++|++|+|++| .+..+ |..|+++++|++|++++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCC
Confidence 3578888888999987765 5899999999999988 567999999999999999 66666 56799999999999999
Q ss_pred cccccccccc-ccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhh
Q 044062 102 TYSLEEMPVG-IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEM 180 (567)
Q Consensus 102 ~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 180 (567)
| .+..+|.. +.++++|+.|++..+... .+
T Consensus 90 n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----------------------------~~-------------------- 119 (477)
T 2id5_A 90 N-RLKLIPLGVFTGLSNLTKLDISENKIV-----------------------------IL-------------------- 119 (477)
T ss_dssp S-CCCSCCTTSSTTCTTCCEEECTTSCCC-----------------------------EE--------------------
T ss_pred C-cCCccCcccccCCCCCCEEECCCCccc-----------------------------cC--------------------
Confidence 9 78888765 677888877765433110 00
Q ss_pred hhhccCCCCCCCcEEEEeecCCCCCcc-cccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCcceeeecccc
Q 044062 181 GVLDMLKPHKNLEQFGICGYGGTKFPT-WLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEF 258 (567)
Q Consensus 181 ~~l~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~ 258 (567)
....+..+++|++|++.++....++. .+. .+++|+.|++++|.+....+ .+..+++|+.|++++|.. ..++...
T Consensus 120 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i-~~~~~~~ 195 (477)
T 2id5_A 120 -LDYMFQDLYNLKSLEVGDNDLVYISHRAFS--GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYS 195 (477)
T ss_dssp -CTTTTTTCTTCCEEEECCTTCCEECTTSST--TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC-CEECTTC
T ss_pred -ChhHccccccCCEEECCCCccceeChhhcc--CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC-cEeChhh
Confidence 01123445666666666665554432 222 46667777777766443322 255666777777776643 2222222
Q ss_pred cCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEEEecchhhhhhcCC
Q 044062 259 YGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLVIQECKELLVSITS 338 (567)
Q Consensus 259 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~l~~~~~~ 338 (567)
+ ..+++|++|+++++......... .....+|++|++++| .++ .+| ...+..
T Consensus 196 ~-----~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~n-~l~-~~~-----------------~~~~~~ 246 (477)
T 2id5_A 196 F-----KRLYRLKVLEISHWPYLDTMTPN-----CLYGLNLTSLSITHC-NLT-AVP-----------------YLAVRH 246 (477)
T ss_dssp S-----CSCTTCCEEEEECCTTCCEECTT-----TTTTCCCSEEEEESS-CCC-SCC-----------------HHHHTT
T ss_pred c-----ccCcccceeeCCCCccccccCcc-----cccCccccEEECcCC-ccc-ccC-----------------HHHhcC
Confidence 1 11455555555554332222111 012234555555442 333 111 234566
Q ss_pred CCCcceEEecCCCCccc----cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccC
Q 044062 339 LPALCKLEIDGCKKVVW----RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQD 414 (567)
Q Consensus 339 ~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 414 (567)
+++|+.|++++|..... +..+++|+.|++++|......+ ..+..+++|+.|+++++. ++.+ +...| ..
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~~--~~~~~-~~ 318 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYLRVLNVSGNQ-LTTL--EESVF-HS 318 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT----TTBTTCTTCCEEECCSSC-CSCC--CGGGB-SC
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH----HHhcCcccCCEEECCCCc-Ccee--CHhHc-CC
Confidence 78888888888875543 4456677777777766544333 445666777777777764 5554 44344 55
Q ss_pred CCCccEEEEcCC
Q 044062 415 ICSLKRLTIDSC 426 (567)
Q Consensus 415 ~~~L~~L~l~~c 426 (567)
+++|++|+++++
T Consensus 319 l~~L~~L~l~~N 330 (477)
T 2id5_A 319 VGNLETLILDSN 330 (477)
T ss_dssp GGGCCEEECCSS
T ss_pred CcccCEEEccCC
Confidence 667777777663
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.8e-22 Score=203.70 Aligned_cols=78 Identities=14% Similarity=0.297 Sum_probs=56.5
Q ss_pred cccccceeeccCCCcccccHH-HHccccCceeeccCccchhhccc-ccccccccceeeccCcccccccccc-cccccccc
Q 044062 43 DLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDCDRLEKLCA-DMGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQ 119 (567)
Q Consensus 43 ~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~ 119 (567)
.++++++|+++++.++.+|.. +..+++|++|++++| .++.++. .++.+++|++|++++| .+..++.. +.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 467888888888888888765 678888888888888 5666654 5788888888888888 56655433 45555444
Q ss_pred ccC
Q 044062 120 TLS 122 (567)
Q Consensus 120 ~L~ 122 (567)
.|+
T Consensus 121 ~L~ 123 (390)
T 3o6n_A 121 VLV 123 (390)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.3e-23 Score=219.05 Aligned_cols=284 Identities=18% Similarity=0.170 Sum_probs=141.8
Q ss_pred hhhhh-hhccccceEEEecCCCCCccc-cccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhcccc-c
Q 044062 13 SILPK-LFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKLCAD-M 88 (567)
Q Consensus 13 ~~~~~-~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~~-~ 88 (567)
.+|+. +..+++|++|++++|.++.++ ..|..+++|++|+|++|.++.+| ..|+.+++|++|+|++| .+..+|.. |
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~ 143 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIF 143 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHh
Confidence 34443 455666666666666666553 35566666666666666666553 33566666666666666 45555554 4
Q ss_pred ccccccceeeccCccccccccc-cccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeec
Q 044062 89 GNLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCS 167 (567)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~ 167 (567)
+++++|++|++++| .+..++. .+.++++|+.|++..+..... .++.+. +|+.+++++|.
T Consensus 144 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~--------------~L~~L~l~~n~- 203 (597)
T 3oja_B 144 HNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIP--------------SLFHANVSYNL- 203 (597)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCT--------------TCSEEECCSSC-
T ss_pred ccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc----Chhhhh--------------hhhhhhcccCc-
Confidence 56666666666666 4444443 356666666665443322111 122222 44555554421
Q ss_pred CCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeC
Q 044062 168 TDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRG 247 (567)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 247 (567)
+..+...++|+.|++.++....++... .++|+.|++++|.+.+ .+.+..+++|++|++++
T Consensus 204 ---------------l~~l~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 204 ---------------LSTLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSY 263 (597)
T ss_dssp ---------------CSEEECCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCS
T ss_pred ---------------cccccCCchhheeeccCCccccccccc----CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCC
Confidence 111222345666666666555444322 3456666666665433 24455566666666666
Q ss_pred CcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCC---CCCcccEE
Q 044062 248 MSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPE---HLPALQML 324 (567)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~l~~L~~L 324 (567)
|......+..+.. +++|+.|+++++. +..+.. ....+++|+.|++++| .+. .+|. .+++|+.|
T Consensus 264 N~l~~~~~~~~~~------l~~L~~L~Ls~N~-l~~l~~-----~~~~l~~L~~L~Ls~N-~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 264 NELEKIMYHPFVK------MQRLERLYISNNR-LVALNL-----YGQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp SCCCEEESGGGTT------CSSCCEEECTTSC-CCEEEC-----SSSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEE
T ss_pred CccCCCCHHHhcC------ccCCCEEECCCCC-CCCCCc-----ccccCCCCcEEECCCC-CCC-ccCcccccCCCCCEE
Confidence 6433332322222 5666666666542 222111 1134556666666653 444 2332 23445555
Q ss_pred EEecchhhhhhcCCCCCcceEEecCCC
Q 044062 325 VIQECKELLVSITSLPALCKLEIDGCK 351 (567)
Q Consensus 325 ~i~~~~~l~~~~~~~~~L~~L~l~~~~ 351 (567)
++++|......+..+++|+.|++++|+
T Consensus 330 ~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 330 YLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp ECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred ECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 555544332233344444444444444
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.5e-21 Score=207.88 Aligned_cols=302 Identities=16% Similarity=0.138 Sum_probs=177.0
Q ss_pred cccccceeeccCCCcccccHH-HHccccCceeeccCccchhhccc-ccccccccceeeccCcccccccccc-cccccccc
Q 044062 43 DLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDCDRLEKLCA-DMGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQ 119 (567)
Q Consensus 43 ~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~ 119 (567)
.+++++.|+++++.+..+|.. +..+++|++|+|++| .+..++. .|+.+++|+.|++++| .+..+|.. ++++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCC
Confidence 467888888888888888655 678888888888888 5666654 5888888888888888 56665543 45555554
Q ss_pred ccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEee
Q 044062 120 TLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICG 199 (567)
Q Consensus 120 ~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 199 (567)
.|+ +.+
T Consensus 127 ~L~--------------------------------------------------------------------------L~~ 132 (597)
T 3oja_B 127 VLV--------------------------------------------------------------------------LER 132 (597)
T ss_dssp EEE--------------------------------------------------------------------------CCS
T ss_pred EEE--------------------------------------------------------------------------eeC
Confidence 443 333
Q ss_pred cCCCCCcccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeeccc
Q 044062 200 YGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVM 278 (567)
Q Consensus 200 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 278 (567)
+....+|..... .+++|+.|++++|.+.+..+ .++.+++|++|++++|. +..++. ..+++|+.|+++++
T Consensus 133 n~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~--------~~l~~L~~L~l~~n 202 (597)
T 3oja_B 133 NDLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL--------SLIPSLFHANVSYN 202 (597)
T ss_dssp SCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCG--------GGCTTCSEEECCSS
T ss_pred CCCCCCCHHHhc-cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcCh--------hhhhhhhhhhcccC
Confidence 333333332211 45566666666666554444 35566667777776663 222221 11566666666554
Q ss_pred ccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEEEecchhhhhhcCCCCCcceEEecCCCCccc--c
Q 044062 279 QEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLVIQECKELLVSITSLPALCKLEIDGCKKVVW--R 356 (567)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~ 356 (567)
. +... ...++|+.|+++++ .+....+...++|+.|++++| ..... .
T Consensus 203 ~-l~~l---------~~~~~L~~L~ls~n-~l~~~~~~~~~~L~~L~L~~n---------------------~l~~~~~l 250 (597)
T 3oja_B 203 L-LSTL---------AIPIAVEELDASHN-SINVVRGPVNVELTILKLQHN---------------------NLTDTAWL 250 (597)
T ss_dssp C-CSEE---------ECCTTCSEEECCSS-CCCEEECSCCSCCCEEECCSS---------------------CCCCCGGG
T ss_pred c-cccc---------cCCchhheeeccCC-cccccccccCCCCCEEECCCC---------------------CCCCChhh
Confidence 1 1111 23456777777663 444222222344555555544 32222 3
Q ss_pred ccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhh
Q 044062 357 SATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEE 436 (567)
Q Consensus 357 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 436 (567)
..+++|+.|++++|......+ ..+..+++|+.|+++++. +..+ +.. + ..+++|++|++++ +.++.++...
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~-l~~l--~~~-~-~~l~~L~~L~Ls~-N~l~~i~~~~ 320 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNR-LVAL--NLY-G-QPIPTLKVLDLSH-NHLLHVERNQ 320 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECTTSC-CCEE--ECS-S-SCCTTCCEEECCS-SCCCCCGGGH
T ss_pred ccCCCCCEEECCCCccCCCCH----HHhcCccCCCEEECCCCC-CCCC--Ccc-c-ccCCCCcEEECCC-CCCCccCccc
Confidence 344455555555544433332 345667778888887765 5444 222 2 4567888888877 4555554332
Q ss_pred hhHHHhhhhhccCceeEEEccCCCCCcccccCCCCCCCccEEEEccCC
Q 044062 437 EKDQQQQLCELSCRLEYLGLRSCEGLVKLPQSSLGLNSLRDIEIYKCS 484 (567)
Q Consensus 437 ~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~ 484 (567)
..+ ++|+.|++++|. ++.++ +..+++|+.|++++|+
T Consensus 321 -----~~l----~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 321 -----PQF----DRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -----HHH----TTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred -----ccC----CCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 233 788888888876 55553 5667788888888764
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3e-21 Score=189.30 Aligned_cols=93 Identities=24% Similarity=0.388 Sum_probs=82.0
Q ss_pred cccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeecc
Q 044062 21 LQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNS 100 (567)
Q Consensus 21 l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~ 100 (567)
..+++.|++++|.++.+|+.+..+++|++|++++|.++.+|..++.+++|++|++++| .+..+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 4789999999999999998888899999999999999999988999999999999998 677889889999999999999
Q ss_pred Cccccccccccccc
Q 044062 101 NTYSLEEMPVGIGK 114 (567)
Q Consensus 101 ~~~~~~~lp~~~~~ 114 (567)
+|.....+|..+..
T Consensus 159 ~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 159 ACPELTELPEPLAS 172 (328)
T ss_dssp EETTCCCCCSCSEE
T ss_pred CCCCccccChhHhh
Confidence 98677777765543
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=2.8e-23 Score=221.73 Aligned_cols=417 Identities=15% Similarity=0.094 Sum_probs=258.5
Q ss_pred hhhhhhhccccceEEEecCCCC----Cccccc------------cccccccceeeccCCCccc-ccHHHHc-cc-cCcee
Q 044062 13 SILPKLFKLQRLRVFSLRGYRI----SELPDS------------VGDLRYLRHLNLSGTEIKT-LPESVNK-LY-NLHTL 73 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~----~~l~~~------------~~~l~~L~~L~L~~~~l~~-lp~~~~~-l~-~L~~L 73 (567)
..+..+.++++|+.|+++++.. ..+|.. ...+++|++|+|++|.++. .+..+.. ++ +|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3444678889999999988642 112211 2378999999999998874 3555665 44 49999
Q ss_pred eccCccchh--hcccccccccccceeeccCcccccc-----ccccccccccccccCceEeccCCC--CCcc-cccccccc
Q 044062 74 LLEDCDRLE--KLCADMGNLTKLHHLNNSNTYSLEE-----MPVGIGKLTCLQTLSNFVVGKDSG--LRLP-ELKLLMHL 143 (567)
Q Consensus 74 ~L~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~~~~~~~~~~--~~~~-~l~~l~~l 143 (567)
++++|..+. .++..+.++++|++|++++| .+.. ++....++++|+.|++..+..... ..+. .+.+++
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-- 220 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR-- 220 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT--
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC--
Confidence 999985332 23333458899999999999 4432 223345678888887654433210 1111 123344
Q ss_pred ccceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCC----CCcccccCCCCCccce
Q 044062 144 RGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGT----KFPTWLGDSSFSNLVT 219 (567)
Q Consensus 144 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~L~~ 219 (567)
+|+.|++..+... .....+..+++|++|.+..+... .....+. .+++|+.
T Consensus 221 ------------~L~~L~L~~~~~~------------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~~~~L~~ 274 (592)
T 3ogk_B 221 ------------SLVSVKVGDFEIL------------ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV--FPRKLCR 274 (592)
T ss_dssp ------------TCCEEECSSCBGG------------GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC--CCTTCCE
T ss_pred ------------CCcEEeccCccHH------------HHHHHHhhhhHHHhhcccccccccchHHHHHHhh--ccccccc
Confidence 7888888663111 12233445588999998754332 1222222 5788999
Q ss_pred EEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeecc-cccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCC
Q 044062 220 LKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGS-EFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPK 298 (567)
Q Consensus 220 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 298 (567)
+.++++........+..+++|++|++++|. +..... .... .+++|++|++.++ +.+.....+ ...+++
T Consensus 275 L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~-----~~~~L~~L~L~~~--~~~~~l~~~---~~~~~~ 343 (592)
T 3ogk_B 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQ-----KCPNLEVLETRNV--IGDRGLEVL---AQYCKQ 343 (592)
T ss_dssp EEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHT-----TCTTCCEEEEEGG--GHHHHHHHH---HHHCTT
T ss_pred cCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHH-----hCcCCCEEeccCc--cCHHHHHHH---HHhCCC
Confidence 988875422222245568899999999886 333222 2222 2899999999843 222111111 146889
Q ss_pred ccEEEEcC----------CCCcccCC----CCCCCcccEEEEecchhh---hhhcC-CCCCcceEEecC---CCCccc--
Q 044062 299 LRELDILR----------CSKLQGTF----PEHLPALQMLVIQECKEL---LVSIT-SLPALCKLEIDG---CKKVVW-- 355 (567)
Q Consensus 299 L~~L~l~~----------c~~l~~~~----~~~l~~L~~L~i~~~~~l---~~~~~-~~~~L~~L~l~~---~~~~~~-- 355 (567)
|++|++++ |+.+++.. ...+++|++|++..+... ...+. .+++|+.|++++ |+.++.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 99999995 77776421 234789999999544321 22223 388999999974 334432
Q ss_pred --------cccCCCCCcccccccCC-CccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCC
Q 044062 356 --------RSATDHLGSQNSVVCRD-TSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSC 426 (567)
Q Consensus 356 --------~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 426 (567)
...+++|+.|++++|.. +..... ......+++|+.|++++|. +++. ....++..+++|++|++++|
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~--~~~~~~~~~L~~L~L~~n~-l~~~--~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL--SYIGQYSPNVRWMLLGYVG-ESDE--GLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH--HHHHHSCTTCCEEEECSCC-SSHH--HHHHHHTCCTTCCEEEEESC
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHH--HHHHHhCccceEeeccCCC-CCHH--HHHHHHhcCcccCeeeccCC
Confidence 44688999999987653 221110 0112347899999999987 5543 33444477899999999998
Q ss_pred CCccccchhhhhHHHhhhhhccCceeEEEccCCCCCccc--ccCCCCCCCccEEEEccC
Q 044062 427 PKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKL--PQSSLGLNSLRDIEIYKC 483 (567)
Q Consensus 427 ~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~~L~~L~l~~c 483 (567)
+ ++......+. ..+ ++|++|++++|. ++.. ......++.+....+...
T Consensus 499 ~-l~~~~~~~~~---~~l----~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 499 C-FSERAIAAAV---TKL----PSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp C-CBHHHHHHHH---HHC----SSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred C-CcHHHHHHHH---Hhc----CccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 7 5433222221 334 899999999998 5532 222346777777777653
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=3.5e-23 Score=221.05 Aligned_cols=294 Identities=12% Similarity=-0.004 Sum_probs=176.1
Q ss_pred cccccccccceeeccCCCcc----c------------ccHHHHccccCceeeccCccchhhccccccc-cc-ccceeecc
Q 044062 39 DSVGDLRYLRHLNLSGTEIK----T------------LPESVNKLYNLHTLLLEDCDRLEKLCADMGN-LT-KLHHLNNS 100 (567)
Q Consensus 39 ~~~~~l~~L~~L~L~~~~l~----~------------lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~-l~-~L~~L~l~ 100 (567)
..+..+++|+.|+++++... . ++.....+++|++|+|++|.--...+..++. ++ +|++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 44578999999999875321 1 2223448999999999998322233344555 34 49999999
Q ss_pred Cccccc--cccccccccccccccCceEeccCCCCC--cc-ccccccccccceeecccccccccceEEEeeecCCCCCCcc
Q 044062 101 NTYSLE--EMPVGIGKLTCLQTLSNFVVGKDSGLR--LP-ELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSRE 175 (567)
Q Consensus 101 ~~~~~~--~lp~~~~~l~~L~~L~~~~~~~~~~~~--~~-~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 175 (567)
+|..+. .++....++++|++|++..+...+... +. ....++ +|++|+++++.... .
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~--------------~L~~L~L~~n~~~~--~--- 207 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT--------------SLEVLNFYMTEFAK--I--- 207 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC--------------CCCEEECTTCCCSS--C---
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC--------------CccEEEeeccCCCc--c---
Confidence 984332 233334578999999876553221110 11 123344 88888886642211 0
Q ss_pred chhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcc----cCCCCCCCCCCcEEEEeCCcce
Q 044062 176 AETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCT----VLPSVGQLPSLKHLTVRGMSRV 251 (567)
Q Consensus 176 ~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~ 251 (567)
........+..+++|++|++.++....++..+. .+++|+.|+++.+.... ....+..+++|+.+.+.++. .
T Consensus 208 --~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~ 282 (592)
T 3ogk_B 208 --SPKDLETIARNCRSLVSVKVGDFEILELVGFFK--AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-P 282 (592)
T ss_dssp --CHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH--HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-T
T ss_pred --CHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh--hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-h
Confidence 111122223456899999999988777776665 68999999998643321 12246778999999998752 2
Q ss_pred eeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccC----CCCCCCcccEEEEe
Q 044062 252 KRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGT----FPEHLPALQMLVIQ 327 (567)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----~~~~l~~L~~L~i~ 327 (567)
..++.. ...+++|++|+++++. +....... .+..+++|++|++.+ .+.+. +...+++|++|+++
T Consensus 283 ~~l~~~------~~~~~~L~~L~Ls~~~-l~~~~~~~---~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 283 NEMPIL------FPFAAQIRKLDLLYAL-LETEDHCT---LIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TTGGGG------GGGGGGCCEEEETTCC-CCHHHHHH---HHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEE
T ss_pred hHHHHH------HhhcCCCcEEecCCCc-CCHHHHHH---HHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEee
Confidence 222221 1227899999999886 33322211 126789999999984 23321 11246778888888
Q ss_pred c----------chhh-----hhhcCCCCCcceEEecCCCCccc-----cccCCCCCccccc
Q 044062 328 E----------CKEL-----LVSITSLPALCKLEIDGCKKVVW-----RSATDHLGSQNSV 368 (567)
Q Consensus 328 ~----------~~~l-----~~~~~~~~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~ 368 (567)
+ |..+ ......+++|++|+++.+..... ...+++|+.|+++
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 4 4332 12223467777777744443222 1225555555554
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.1e-20 Score=185.95 Aligned_cols=243 Identities=19% Similarity=0.201 Sum_probs=170.5
Q ss_pred ccceEEEecCCCCCccccccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhc-ccccccccccceeec
Q 044062 22 QRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKL-CADMGNLTKLHHLNN 99 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l-~~~~~~l~~L~~L~l 99 (567)
.++++++++++.++.+|..+. +++++|++++|.++.++. .|..+++|++|++++| .++.+ |..++++++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 378899999988888876664 578999999999988855 6889999999999988 56666 667889999999999
Q ss_pred cCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhh
Q 044062 100 SNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETE 179 (567)
Q Consensus 100 ~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 179 (567)
++| .+..+|..+. ++|+.|++..+... ......+..++ +|+.++++.+.... .
T Consensus 108 s~n-~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~--------------~L~~L~l~~n~l~~---------~ 160 (330)
T 1xku_A 108 SKN-QLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLN--------------QMIVVELGTNPLKS---------S 160 (330)
T ss_dssp CSS-CCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCT--------------TCCEEECCSSCCCG---------G
T ss_pred CCC-cCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCc--------------cccEEECCCCcCCc---------c
Confidence 998 7888887665 67888876544321 11122344555 77788776642211 0
Q ss_pred hhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCcceeeecccc
Q 044062 180 MGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEF 258 (567)
Q Consensus 180 ~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~ 258 (567)
......+..+++|+.|++.++....+|... .++|+.|++++|.+....+ .+..+++|++|++++|. +..++...
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 235 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGS 235 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTT
T ss_pred CcChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhh
Confidence 011233556688999999888887777643 3688999999888666544 57778899999998885 34443322
Q ss_pred cCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcc
Q 044062 259 YGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQ 311 (567)
Q Consensus 259 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 311 (567)
+ ..+++|++|+++++. +. .++..+..+++|++|+++++ .++
T Consensus 236 ~-----~~l~~L~~L~L~~N~-l~-----~lp~~l~~l~~L~~L~l~~N-~i~ 276 (330)
T 1xku_A 236 L-----ANTPHLRELHLNNNK-LV-----KVPGGLADHKYIQVVYLHNN-NIS 276 (330)
T ss_dssp G-----GGSTTCCEEECCSSC-CS-----SCCTTTTTCSSCCEEECCSS-CCC
T ss_pred c-----cCCCCCCEEECCCCc-Cc-----cCChhhccCCCcCEEECCCC-cCC
Confidence 2 227888888888763 22 22333467788888888884 566
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.6e-21 Score=188.77 Aligned_cols=210 Identities=23% Similarity=0.378 Sum_probs=144.4
Q ss_pred ccchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhccc
Q 044062 7 HGYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCA 86 (567)
Q Consensus 7 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 86 (567)
+++.+..+|+.+.++++|++|++++|.++.+|..+..+++|++|++++|.++.+|..++.+++|++|++++|...+.+|.
T Consensus 89 ~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 89 RSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp ESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred cCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 33444468888999999999999999999999999999999999999999999999999999999999999878888887
Q ss_pred cccc---------ccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccc
Q 044062 87 DMGN---------LTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENL 157 (567)
Q Consensus 87 ~~~~---------l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L 157 (567)
.++. +++|++|++++| .+..+|..+.++++|+.|++..+....
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~--------------------------- 220 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA--------------------------- 220 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC---------------------------
T ss_pred hHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc---------------------------
Confidence 7654 889999999888 777777777777666666543332100
Q ss_pred cceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCC-CCCcccccCCCCCccceEEEecCCCcccCC-CCC
Q 044062 158 RELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGG-TKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVG 235 (567)
Q Consensus 158 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 235 (567)
....+..+++|+.|++.++.. ..+|..+. .+++|+.|++++|...+.+| .+.
T Consensus 221 ------------------------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 221 ------------------------LGPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp ------------------------CCGGGGGCTTCCEEECTTCTTCCBCCCCTT--CCCCCCEEECTTCTTCCBCCTTGG
T ss_pred ------------------------CchhhccCCCCCEEECcCCcchhhhHHHhc--CCCCCCEEECCCCCchhhcchhhh
Confidence 011123334555555555432 23333333 45566666666665555555 355
Q ss_pred CCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeec
Q 044062 236 QLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFE 276 (567)
Q Consensus 236 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 276 (567)
.+++|++|++++|.....++..+.. +++++.+.+.
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~------L~~L~~l~l~ 309 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQ------LPANCIILVP 309 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGG------SCTTCEEECC
T ss_pred cCCCCCEEeCCCCCchhhccHHHhh------ccCceEEeCC
Confidence 5666666666666555555544322 4555555544
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.8e-20 Score=184.63 Aligned_cols=242 Identities=16% Similarity=0.170 Sum_probs=163.8
Q ss_pred ccceEEEecCCCCCccccccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhc-ccccccccccceeec
Q 044062 22 QRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKL-CADMGNLTKLHHLNN 99 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l-~~~~~~l~~L~~L~l 99 (567)
.++++++++++.++.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++| .++.+ |..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 379999999999998887664 6899999999999988 457999999999999998 56666 566899999999999
Q ss_pred cCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhh
Q 044062 100 SNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETE 179 (567)
Q Consensus 100 ~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 179 (567)
++| .+..+|..+. ++|++|++..+.... .....+..++ +|+.|++++|.....
T Consensus 110 ~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~--------------~L~~L~l~~n~l~~~--------- 162 (332)
T 2ft3_A 110 SKN-HLVEIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLR--------------NMNCIEMGGNPLENS--------- 162 (332)
T ss_dssp CSS-CCCSCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCS--------------SCCEEECCSCCCBGG---------
T ss_pred CCC-cCCccCcccc--ccCCEEECCCCccCc-cCHhHhCCCc--------------cCCEEECCCCccccC---------
Confidence 999 7888887765 788888765543321 1112244455 777777766422110
Q ss_pred hhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCcceeeecccc
Q 044062 180 MGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEF 258 (567)
Q Consensus 180 ~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~ 258 (567)
......+..+ +|+.|++.++....+|..+ .++|+.|++++|.+....+ .+..+++|++|++++|. +..++...
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~ 236 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGS 236 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTG
T ss_pred CCCcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhH
Confidence 0111223344 7788888877777766543 3578888888877665543 46677888888888774 33333322
Q ss_pred cCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcc
Q 044062 259 YGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQ 311 (567)
Q Consensus 259 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 311 (567)
+. .+++|++|+++++. +. .++..+..+++|++|++++ +.++
T Consensus 237 ~~-----~l~~L~~L~L~~N~-l~-----~lp~~l~~l~~L~~L~l~~-N~l~ 277 (332)
T 2ft3_A 237 LS-----FLPTLRELHLDNNK-LS-----RVPAGLPDLKLLQVVYLHT-NNIT 277 (332)
T ss_dssp GG-----GCTTCCEEECCSSC-CC-----BCCTTGGGCTTCCEEECCS-SCCC
T ss_pred hh-----CCCCCCEEECCCCc-Ce-----ecChhhhcCccCCEEECCC-CCCC
Confidence 22 26777777777653 22 1222335677777777777 3555
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=5.4e-20 Score=181.16 Aligned_cols=277 Identities=14% Similarity=0.128 Sum_probs=190.4
Q ss_pred chhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhccc
Q 044062 9 YLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCA 86 (567)
Q Consensus 9 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~ 86 (567)
+.+..+|..+. +++++|++++|.++.++ .+|..+++|++|++++|.++.+ |..+..+++|++|++++| .++.+|.
T Consensus 43 ~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~ 119 (332)
T 2ft3_A 43 LGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPP 119 (332)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCS
T ss_pred CCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCc
Confidence 33345777664 68999999999999875 5789999999999999999987 778999999999999998 7888887
Q ss_pred ccccccccceeeccCcccccccccc-ccccccccccCceEeccCCC-CCccccccccccccceeecccccccccceEEEe
Q 044062 87 DMGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVGKDSG-LRLPELKLLMHLRGTLEISKLENENLRELLLRW 164 (567)
Q Consensus 87 ~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~-~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~ 164 (567)
.+. ++|++|++++| .+..+|.. +.++++|+.|++..+..... .....+..+ +|+.+++++
T Consensus 120 ~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---------------~L~~L~l~~ 181 (332)
T 2ft3_A 120 NLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL---------------KLNYLRISE 181 (332)
T ss_dssp SCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC---------------CCSCCBCCS
T ss_pred ccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC---------------ccCEEECcC
Confidence 766 89999999999 78888765 88999999998765543211 111111111 466666665
Q ss_pred eecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCc-ccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcE
Q 044062 165 TCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFP-TWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKH 242 (567)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~ 242 (567)
+.... .+ ..+ .++|++|++.++....++ ..+. .+++|+.|++++|.+....+ .+..+++|++
T Consensus 182 n~l~~--l~----------~~~--~~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 182 AKLTG--IP----------KDL--PETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp SBCSS--CC----------SSS--CSSCSCCBCCSSCCCCCCTTSST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred CCCCc--cC----------ccc--cCCCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 42221 11 111 157888888888877765 3343 68889999999988766555 4777889999
Q ss_pred EEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCC--cccCCCCccEEEEcCCCCccc-CCC---C
Q 044062 243 LTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSE--GVERFPKLRELDILRCSKLQG-TFP---E 316 (567)
Q Consensus 243 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~-~~~---~ 316 (567)
|++++|. +..++..+.. +++|++|+++++. ++......+.. .....+.|+.+++.+++.... ..+ .
T Consensus 246 L~L~~N~-l~~lp~~l~~------l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 246 LHLDNNK-LSRVPAGLPD------LKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp EECCSSC-CCBCCTTGGG------CTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred EECCCCc-CeecChhhhc------CccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 9999884 4555544332 7899999998763 33332222110 002257789999998653321 222 3
Q ss_pred CCCcccEEEEecch
Q 044062 317 HLPALQMLVIQECK 330 (567)
Q Consensus 317 ~l~~L~~L~i~~~~ 330 (567)
.+++|+.+++++|.
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 46788889888764
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=6.3e-20 Score=180.53 Aligned_cols=275 Identities=15% Similarity=0.148 Sum_probs=197.8
Q ss_pred hhhhhhhhhccccceEEEecCCCCCcccc-ccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhccccc
Q 044062 11 ALSILPKLFKLQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCADM 88 (567)
Q Consensus 11 ~~~~~~~~~~l~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~~ 88 (567)
+..+|..++ +++++|++++|.++.+++ .|..+++|++|++++|.++.+ |..+..+++|++|++++| .++.+|..+
T Consensus 43 l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~ 119 (330)
T 1xku_A 43 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM 119 (330)
T ss_dssp CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC
T ss_pred ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhh
Confidence 334676655 689999999999998864 789999999999999999987 788999999999999998 688888766
Q ss_pred ccccccceeeccCcccccccccc-ccccccccccCceEeccCC-CCCccccccccccccceeecccccccccceEEEeee
Q 044062 89 GNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVGKDS-GLRLPELKLLMHLRGTLEISKLENENLRELLLRWTC 166 (567)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~-~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~ 166 (567)
. ++|++|++++| .+..++.. +.++++|+.|++..+.... ......+..++ +|+.|+++++.
T Consensus 120 ~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~--------------~L~~L~l~~n~ 182 (330)
T 1xku_A 120 P--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK--------------KLSYIRIADTN 182 (330)
T ss_dssp C--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT--------------TCCEEECCSSC
T ss_pred c--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC--------------CcCEEECCCCc
Confidence 5 79999999999 77777654 8899999999876654322 12233455556 88888887743
Q ss_pred cCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCc-ccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEE
Q 044062 167 STDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFP-TWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLT 244 (567)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 244 (567)
... .+. .+ .++|++|++.++....++ ..+. .+++|+.|++++|.+....+ .+..+++|++|+
T Consensus 183 l~~--l~~----------~~--~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 183 ITT--IPQ----------GL--PPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp CCS--CCS----------SC--CTTCSEEECTTSCCCEECTGGGT--TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred ccc--CCc----------cc--cccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence 221 111 11 268999999998877663 4444 68999999999999776655 577899999999
Q ss_pred EeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCC--cccCCCCccEEEEcCCCCcccCCC----CCC
Q 044062 245 VRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSE--GVERFPKLRELDILRCSKLQGTFP----EHL 318 (567)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~----~~l 318 (567)
+++|. +..++..+ ..+++|++|+++++. ++......+.. .....+.++.+++.+++.-...++ ..+
T Consensus 247 L~~N~-l~~lp~~l------~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 247 LNNNK-LVKVPGGL------ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp CCSSC-CSSCCTTT------TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred CCCCc-CccCChhh------ccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence 99984 44555433 238999999999874 33332222110 012357899999998543221222 346
Q ss_pred CcccEEEEecc
Q 044062 319 PALQMLVIQEC 329 (567)
Q Consensus 319 ~~L~~L~i~~~ 329 (567)
++++.+++++|
T Consensus 319 ~~l~~l~L~~N 329 (330)
T 1xku_A 319 YVRAAVQLGNY 329 (330)
T ss_dssp CCGGGEEC---
T ss_pred cceeEEEeccc
Confidence 78999998876
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=5e-23 Score=212.77 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=58.8
Q ss_pred ccceEEEecCCCCCccc--cccccccccceeeccCCCcc-----cccHHHHccccCceeeccCccchhh-ccccc-cccc
Q 044062 22 QRLRVFSLRGYRISELP--DSVGDLRYLRHLNLSGTEIK-----TLPESVNKLYNLHTLLLEDCDRLEK-LCADM-GNLT 92 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~--~~~~~l~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~~~~~~~-l~~~~-~~l~ 92 (567)
++|++|++++++++..+ ..+..+++|++|++++|.++ .++..+..+++|++|++++| .+++ .+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHh
Confidence 45667777777666432 22566677777777777666 33555666677777777766 3332 12222 2343
Q ss_pred ----ccceeeccCccccc-----cccccccccccccccCceE
Q 044062 93 ----KLHHLNNSNTYSLE-----EMPVGIGKLTCLQTLSNFV 125 (567)
Q Consensus 93 ----~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~~~~ 125 (567)
+|++|++++| .+. .++..+.++++|+.|++..
T Consensus 82 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 122 (461)
T 1z7x_W 82 TPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSD 122 (461)
T ss_dssp STTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred hCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCC
Confidence 5777777776 444 3345566666666665443
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.6e-20 Score=182.93 Aligned_cols=242 Identities=18% Similarity=0.227 Sum_probs=149.2
Q ss_pred ccceEEEecCCCCC---ccccccccccccceeeccC-CCcc-cccHHHHccccCceeeccCccchhhcccccccccccce
Q 044062 22 QRLRVFSLRGYRIS---ELPDSVGDLRYLRHLNLSG-TEIK-TLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHH 96 (567)
Q Consensus 22 ~~L~~L~L~~~~~~---~l~~~~~~l~~L~~L~L~~-~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 96 (567)
.+++.|+++++.++ .+|+.+..+++|++|++++ |.+. .+|..++.+++|++|++++|...+.+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57899999999887 4788889999999999984 7777 67888999999999999988433477888999999999
Q ss_pred eeccCccccc-cccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCcc
Q 044062 97 LNNSNTYSLE-EMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSRE 175 (567)
Q Consensus 97 L~l~~~~~~~-~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 175 (567)
|++++| .+. .+|..+.++++|++|++..+.... ..
T Consensus 130 L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~------------------------------------------ 165 (313)
T 1ogq_A 130 LDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISG-AI------------------------------------------ 165 (313)
T ss_dssp EECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEE-EC------------------------------------------
T ss_pred EeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccC-cC------------------------------------------
Confidence 999998 555 677778888888888654432110 00
Q ss_pred chhhhhhhccCCCCC-CCcEEEEeecCCC-CCcccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCccee
Q 044062 176 AETEMGVLDMLKPHK-NLEQFGICGYGGT-KFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVK 252 (567)
Q Consensus 176 ~~~~~~~l~~l~~~~-~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~ 252 (567)
...+..++ +|+.|++.++... ..|..+. .+. |+.|++++|.+.+..+ .+..+++|++|++++|....
T Consensus 166 -------p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~--~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 166 -------PDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp -------CGGGGCCCTTCCEEECCSSEEEEECCGGGG--GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred -------CHHHhhhhhcCcEEECcCCeeeccCChHHh--CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 11122223 4555555554433 2333333 233 6666666665444333 34556666666666654322
Q ss_pred eecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCC--CCCcccEEEEecch
Q 044062 253 RLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPE--HLPALQMLVIQECK 330 (567)
Q Consensus 253 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~l~~L~~L~i~~~~ 330 (567)
..+. + ..+++|++|+++++.. ... ++..+..+++|++|++++ +.+++.+|. .+++|+.+++.+|+
T Consensus 236 ~~~~-~------~~l~~L~~L~Ls~N~l-~~~----~p~~l~~l~~L~~L~Ls~-N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 DLGK-V------GLSKNLNGLDLRNNRI-YGT----LPQGLTQLKFLHSLNVSF-NNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp BGGG-C------CCCTTCCEEECCSSCC-EEC----CCGGGGGCTTCCEEECCS-SEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred ecCc-c------cccCCCCEEECcCCcc-cCc----CChHHhcCcCCCEEECcC-CcccccCCCCccccccChHHhcCCC
Confidence 2221 1 1156666666665432 111 122235566666777766 355555553 35566666666654
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=4e-20 Score=183.78 Aligned_cols=259 Identities=19% Similarity=0.151 Sum_probs=192.6
Q ss_pred hhhhhhhhhhccccceEEEecCCCCCcccc-ccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhcccc
Q 044062 10 LALSILPKLFKLQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCAD 87 (567)
Q Consensus 10 ~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~ 87 (567)
.+..+|..+. ++|++|++++|+++.++. .+..+++|+.|++++|.++.+ |..+..+++|++|++++| .++.+|..
T Consensus 42 ~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 118 (353)
T 2z80_A 42 SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSS 118 (353)
T ss_dssp TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHH
T ss_pred Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHh
Confidence 3335787666 599999999999998865 789999999999999999987 566999999999999999 78888876
Q ss_pred -cccccccceeeccCccccccccc--cccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEe
Q 044062 88 -MGNLTKLHHLNNSNTYSLEEMPV--GIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRW 164 (567)
Q Consensus 88 -~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~ 164 (567)
++++++|++|++++| .+..+|. .+.++++|+.|++..+..........+..++ +|+.|++++
T Consensus 119 ~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~--------------~L~~L~l~~ 183 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT--------------FLEELEIDA 183 (353)
T ss_dssp HHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC--------------EEEEEEEEE
T ss_pred HhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC--------------CCCEEECCC
Confidence 899999999999999 8888887 5889999999988766422222233455566 888999987
Q ss_pred eecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC----CCCCCCCC
Q 044062 165 TCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP----SVGQLPSL 240 (567)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~l~~L 240 (567)
|.... .....+..+++|++|++.++....++..... .+++|+.|++++|.+.+..+ .....+.+
T Consensus 184 n~l~~-----------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 184 SDLQS-----------YEPKSLKSIQNVSHLILHMKQHILLLEIFVD-VTSSVECLELRDTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp TTCCE-----------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHH-HTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred CCcCc-----------cCHHHHhccccCCeecCCCCccccchhhhhh-hcccccEEECCCCccccccccccccccccchh
Confidence 52221 1234567778999999999988777654432 47899999999998765433 23346778
Q ss_pred cEEEEeCCccee----eecccccCCCCCCCCCCcceeeecccccccccccCCCCCc-ccCCCCccEEEEcCCCCcc
Q 044062 241 KHLTVRGMSRVK----RLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEG-VERFPKLRELDILRCSKLQ 311 (567)
Q Consensus 241 ~~L~l~~~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~ 311 (567)
+.+++.++.... .++..+ ..+++|++|+++++. ++.. +.. ...+++|++|+++++ .+.
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l------~~l~~L~~L~Ls~N~-l~~i-----~~~~~~~l~~L~~L~L~~N-~~~ 314 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLL------NQISGLLELEFSRNQ-LKSV-----PDGIFDRLTSLQKIWLHTN-PWD 314 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHH------HTCTTCCEEECCSSC-CCCC-----CTTTTTTCTTCCEEECCSS-CBC
T ss_pred hccccccccccCcchhhhHHHH------hcccCCCEEECCCCC-CCcc-----CHHHHhcCCCCCEEEeeCC-Ccc
Confidence 899998774221 122222 228999999999873 3322 222 267899999999995 444
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=4.7e-22 Score=212.39 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=76.1
Q ss_pred hhhccccceEEEecCCC-CCcc---c------------cccccccccceeeccCCCcccc-cHHHH-ccccCceeeccCc
Q 044062 17 KLFKLQRLRVFSLRGYR-ISEL---P------------DSVGDLRYLRHLNLSGTEIKTL-PESVN-KLYNLHTLLLEDC 78 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~-~~~l---~------------~~~~~l~~L~~L~L~~~~l~~l-p~~~~-~l~~L~~L~L~~~ 78 (567)
.+.++++|+.|+++++. +..+ | .....+++|+.|++++|.++.. +..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 46788899999999975 2211 1 1125788999999999988743 45554 7899999999998
Q ss_pred cchhh--cccccccccccceeeccCcccccc-----ccccccccccccccCceEe
Q 044062 79 DRLEK--LCADMGNLTKLHHLNNSNTYSLEE-----MPVGIGKLTCLQTLSNFVV 126 (567)
Q Consensus 79 ~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~~~~~ 126 (567)
..++. ++..+.++++|++|++++| .+.. ++.....+++|+.|++..+
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 65554 4454568999999999998 4443 2222335667777765433
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=184.21 Aligned_cols=229 Identities=19% Similarity=0.217 Sum_probs=145.9
Q ss_pred hhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhcccc-cc
Q 044062 13 SILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKLCAD-MG 89 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~~-~~ 89 (567)
.+|..++ ++++.|+|++|+++.++ .+|..+++|++|+|++|.++.++ ..|..+++|++|+|++| .++.+|.. +.
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 133 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFV 133 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSC
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhh
Confidence 4555444 46666777777666553 55666777777777777666653 45666777777777766 55566543 66
Q ss_pred cccccceeeccCccccccccc-cccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecC
Q 044062 90 NLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCST 168 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~ 168 (567)
.+++|++|++++| .+..+|. .+.++++|+.|++..+. ..
T Consensus 134 ~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~---------------------------------------~l 173 (440)
T 3zyj_A 134 YLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELK---------------------------------------RL 173 (440)
T ss_dssp SCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCT---------------------------------------TC
T ss_pred ccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCC---------------------------------------Cc
Confidence 6677777777766 5555554 35566666655433211 00
Q ss_pred CCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeC
Q 044062 169 DGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRG 247 (567)
Q Consensus 169 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 247 (567)
.. .....+..+++|+.|++.++....+|.. . .+++|+.|++++|.+....+ .+..+++|++|++++
T Consensus 174 ~~----------i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 174 SY----------ISEGAFEGLSNLRYLNLAMCNLREIPNL-T--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp CE----------ECTTTTTTCSSCCEEECTTSCCSSCCCC-T--TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ce----------eCcchhhcccccCeecCCCCcCcccccc-C--CCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 00 0012355567888888888887777753 2 58889999999988766655 577888999999988
Q ss_pred CcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCC
Q 044062 248 MSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCS 308 (567)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 308 (567)
|. +..++...+.. +++|+.|+++++. ++..... .+..+++|+.|++++++
T Consensus 241 n~-l~~~~~~~~~~-----l~~L~~L~L~~N~-l~~~~~~----~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 241 SQ-IQVIERNAFDN-----LQSLVEINLAHNN-LTLLPHD----LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CC-CCEECTTSSTT-----CTTCCEEECTTSC-CCCCCTT----TTSSCTTCCEEECCSSC
T ss_pred Cc-eeEEChhhhcC-----CCCCCEEECCCCC-CCccChh----HhccccCCCEEEcCCCC
Confidence 75 44444433332 8899999998863 3333222 12567899999998853
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.9e-19 Score=185.11 Aligned_cols=228 Identities=20% Similarity=0.207 Sum_probs=140.6
Q ss_pred hhhhhhhccccceEEEecCCCCCcc-ccccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhcccc-cc
Q 044062 13 SILPKLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKLCAD-MG 89 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~~-~~ 89 (567)
.+|..++ +++++|+|++|.++.+ +..|..+++|+.|+|++|.++.++ ..|..+++|++|+|++| .++.+|.. ++
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 144 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFE 144 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSS
T ss_pred ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhc
Confidence 3554444 4666666666666655 345666666666666666666553 45666666666666666 45555544 56
Q ss_pred cccccceeeccCccccccccc-cccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecC
Q 044062 90 NLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCST 168 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~ 168 (567)
.+++|++|++++| .+..+|. .+.++++|+.|++..+.. ++.+
T Consensus 145 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~----------------------------l~~i-------- 187 (452)
T 3zyi_A 145 YLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKK----------------------------LEYI-------- 187 (452)
T ss_dssp SCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTT----------------------------CCEE--------
T ss_pred ccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCC----------------------------cccc--------
Confidence 6666666666666 5555554 355566666554332110 0000
Q ss_pred CCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeC
Q 044062 169 DGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRG 247 (567)
Q Consensus 169 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 247 (567)
....+..+++|+.|++.++....++.. . .+++|+.|++++|.+.+..+ .+..+++|++|++++
T Consensus 188 -------------~~~~~~~l~~L~~L~L~~n~l~~~~~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 188 -------------SEGAFEGLFNLKYLNLGMCNIKDMPNL-T--PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp -------------CTTTTTTCTTCCEEECTTSCCSSCCCC-T--TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred -------------ChhhccCCCCCCEEECCCCcccccccc-c--ccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence 011245567788888888877776643 2 57888888888888766655 467788888888888
Q ss_pred CcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCC
Q 044062 248 MSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRC 307 (567)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 307 (567)
|.. ..+....+. .+++|+.|+++++ .++..... .+..+++|+.|+++++
T Consensus 252 n~l-~~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~----~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 252 SQV-SLIERNAFD-----GLASLVELNLAHN-NLSSLPHD----LFTPLRYLVELHLHHN 300 (452)
T ss_dssp SCC-CEECTTTTT-----TCTTCCEEECCSS-CCSCCCTT----SSTTCTTCCEEECCSS
T ss_pred CcC-ceECHHHhc-----CCCCCCEEECCCC-cCCccChH----HhccccCCCEEEccCC
Confidence 753 444333322 2788888888876 33333222 1256788899998885
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=1e-18 Score=184.32 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=68.8
Q ss_pred hccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceee
Q 044062 19 FKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLN 98 (567)
Q Consensus 19 ~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ 98 (567)
+...++++|+++++.++.+|..+. ++|+.|++++|.++.+|. .+++|++|+|++| .++.+|. .+++|++|+
T Consensus 37 c~~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 37 CLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELS 107 (622)
T ss_dssp HHHHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEE
T ss_pred ccCCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEE
Confidence 334569999999999999987766 789999999999998887 6789999999998 6778876 778999999
Q ss_pred ccCccccccccc
Q 044062 99 NSNTYSLEEMPV 110 (567)
Q Consensus 99 l~~~~~~~~lp~ 110 (567)
+++| .+..+|.
T Consensus 108 Ls~N-~l~~l~~ 118 (622)
T 3g06_A 108 IFSN-PLTHLPA 118 (622)
T ss_dssp ECSC-CCCCCCC
T ss_pred CcCC-cCCCCCC
Confidence 9998 6777665
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=1.4e-21 Score=208.59 Aligned_cols=211 Identities=18% Similarity=0.097 Sum_probs=125.1
Q ss_pred hhhhhccccceEEEecCCCCCcc-cccc-ccccccceeeccCC-Cccc--ccHHHHccccCceeeccCccchhh-----c
Q 044062 15 LPKLFKLQRLRVFSLRGYRISEL-PDSV-GDLRYLRHLNLSGT-EIKT--LPESVNKLYNLHTLLLEDCDRLEK-----L 84 (567)
Q Consensus 15 ~~~~~~l~~L~~L~L~~~~~~~l-~~~~-~~l~~L~~L~L~~~-~l~~--lp~~~~~l~~L~~L~L~~~~~~~~-----l 84 (567)
+.-..++++|++|++++|.++.. +..+ ..+++|+.|++++| .++. ++..+..+++|++|++++|. ++. +
T Consensus 98 ~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l 176 (594)
T 2p1m_B 98 EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWL 176 (594)
T ss_dssp HHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGG
T ss_pred HHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHH
Confidence 33456888999999999987742 3455 37899999999998 5664 56667789999999999984 333 3
Q ss_pred ccccccccccceeeccCcc-cc--ccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceE
Q 044062 85 CADMGNLTKLHHLNNSNTY-SL--EEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELL 161 (567)
Q Consensus 85 ~~~~~~l~~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~ 161 (567)
+.....+++|+.|++++|. .+ ..++.-+.++++|+.|++..+..... ....+..+. +|++++
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~--------------~L~~L~ 241 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAP--------------QLEELG 241 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCT--------------TCSEEE
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCC--------------cceEcc
Confidence 3334478899999999983 11 12222234568888887654311000 111223333 677776
Q ss_pred EEeeecCCCCCCccchhhhhhhccCCCCCCCcEEE-EeecCCCCCcccccCCCCCccceEEEecCCCcccCC--CCCCCC
Q 044062 162 LRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFG-ICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP--SVGQLP 238 (567)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~ 238 (567)
+..+.. . ............+..+++|+.+. +.+.....++.... .+++|+.|++++|.+..... .+..++
T Consensus 242 l~~~~~--~---~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 242 TGGYTA--E---VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp CSBCCC--C---CCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred cccccC--c---cchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 654211 0 00111112233455667777773 33222223333322 46778888887777332211 144667
Q ss_pred CCcEEEEeCC
Q 044062 239 SLKHLTVRGM 248 (567)
Q Consensus 239 ~L~~L~l~~~ 248 (567)
+|++|++.+|
T Consensus 315 ~L~~L~l~~~ 324 (594)
T 2p1m_B 315 KLQRLWVLDY 324 (594)
T ss_dssp TCCEEEEEGG
T ss_pred CcCEEeCcCc
Confidence 7777777776
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=6.5e-19 Score=171.36 Aligned_cols=106 Identities=21% Similarity=0.217 Sum_probs=71.4
Q ss_pred hhhhhhhccccceEEEecCCCCCccccc-cccccccceeeccCCCcccc---cHHHHccccCceeeccCccchhhccccc
Q 044062 13 SILPKLFKLQRLRVFSLRGYRISELPDS-VGDLRYLRHLNLSGTEIKTL---PESVNKLYNLHTLLLEDCDRLEKLCADM 88 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~~~l~~~-~~~l~~L~~L~L~~~~l~~l---p~~~~~l~~L~~L~L~~~~~~~~l~~~~ 88 (567)
.+|..++ +++++|++++|+++.+|.. |..+++|++|++++|.++.+ |..+..+++|++|++++| .+..+|..+
T Consensus 21 ~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~ 97 (306)
T 2z66_A 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNF 97 (306)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEE
T ss_pred cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhc
Confidence 4565444 5777777777777777643 57777777777777777644 566667777777777777 566677667
Q ss_pred ccccccceeeccCccccccccc--cccccccccccC
Q 044062 89 GNLTKLHHLNNSNTYSLEEMPV--GIGKLTCLQTLS 122 (567)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~ 122 (567)
..+++|++|++++| .+..++. .+.++++|+.|+
T Consensus 98 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 98 LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp ETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEE
T ss_pred CCCCCCCEEECCCC-cccccccchhhhhccCCCEEE
Confidence 77777777777777 5555543 355555555554
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=2.8e-19 Score=174.14 Aligned_cols=239 Identities=16% Similarity=0.176 Sum_probs=151.9
Q ss_pred CccccccchhhhhhhhhhccccceEEEecC-CCCC-ccccccccccccceeeccCCCcc-cccHHHHccccCceeeccCc
Q 044062 2 LSNRLHGYLALSILPKLFKLQRLRVFSLRG-YRIS-ELPDSVGDLRYLRHLNLSGTEIK-TLPESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 2 ~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~-~l~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~ 78 (567)
++|+++|. ..+|+.+.++++|++|++++ |.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 58 ~~~~l~~~--~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 58 SGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp ECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCCCccCC--cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence 45556541 14678899999999999995 8877 67889999999999999999998 77999999999999999999
Q ss_pred cchhhcccccccccccceeeccCccccc-cccccccccc-cccccCceEeccCCCCCccccccccccccceeeccccccc
Q 044062 79 DRLEKLCADMGNLTKLHHLNNSNTYSLE-EMPVGIGKLT-CLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENEN 156 (567)
Q Consensus 79 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~-~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 156 (567)
...+.+|..++.+++|++|++++| .+. .+|..+.+++ +|+.|++..+.... ..+..+..+ .
T Consensus 136 ~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-~~~~~~~~l---------------~ 198 (313)
T 1ogq_A 136 ALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANL---------------N 198 (313)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEE-ECCGGGGGC---------------C
T ss_pred ccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeec-cCChHHhCC---------------c
Confidence 433478888999999999999999 565 8888899988 88888765442110 001111111 2
Q ss_pred ccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC-CCC
Q 044062 157 LRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVG 235 (567)
Q Consensus 157 L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 235 (567)
|+.|++++|.... .....+..+++|+.|++.++.....+..+. .+++|+.|++++|.+.+.+| .+.
T Consensus 199 L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 199 LAFVDLSRNMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp CSEEECCSSEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGGCC--CCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccEEECcCCcccC-----------cCCHHHhcCCCCCEEECCCCceeeecCccc--ccCCCCEEECcCCcccCcCChHHh
Confidence 4444444421110 112234445556666655555443333222 35555566665555544444 344
Q ss_pred CCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccc
Q 044062 236 QLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQ 279 (567)
Q Consensus 236 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 279 (567)
.+++|++|++++|.....++.. . .+++|+.+++.+++
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~--~-----~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG--G-----NLQRFDVSAYANNK 302 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS--T-----TGGGSCGGGTCSSS
T ss_pred cCcCCCEEECcCCcccccCCCC--c-----cccccChHHhcCCC
Confidence 5555555555555433333321 1 14555555555443
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=3e-18 Score=180.81 Aligned_cols=249 Identities=20% Similarity=0.132 Sum_probs=172.2
Q ss_pred cchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccc
Q 044062 8 GYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCAD 87 (567)
Q Consensus 8 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~ 87 (567)
++.+..+|..++ ++|++|++++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++++| .+..+|.
T Consensus 49 ~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~- 118 (622)
T 3g06_A 49 ESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLPA- 118 (622)
T ss_dssp SSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCCC-
T ss_pred CCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCCC-
Confidence 333345787776 799999999999999876 57899999999999999987 7899999999998 7888876
Q ss_pred cccccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeec
Q 044062 88 MGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCS 167 (567)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~ 167 (567)
.+++|+.|++++| .+..+|..+ ++|+.|++..+..
T Consensus 119 --~l~~L~~L~L~~N-~l~~lp~~l---~~L~~L~Ls~N~l--------------------------------------- 153 (622)
T 3g06_A 119 --LPSGLCKLWIFGN-QLTSLPVLP---PGLQELSVSDNQL--------------------------------------- 153 (622)
T ss_dssp --CCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCC---------------------------------------
T ss_pred --CCCCcCEEECCCC-CCCcCCCCC---CCCCEEECcCCcC---------------------------------------
Confidence 6789999999999 788887643 5555554433211
Q ss_pred CCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeC
Q 044062 168 TDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRG 247 (567)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 247 (567)
.. .+ ..+.+|+.|.+.++....++. .+++|+.|++++|.+.. ++. .+++|+.|++++
T Consensus 154 ~~--l~-------------~~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~l~~-l~~--~~~~L~~L~L~~ 210 (622)
T 3g06_A 154 AS--LP-------------ALPSELCKLWAYNNQLTSLPM-----LPSGLQELSVSDNQLAS-LPT--LPSELYKLWAYN 210 (622)
T ss_dssp SC--CC-------------CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCS
T ss_pred CC--cC-------------CccCCCCEEECCCCCCCCCcc-----cCCCCcEEECCCCCCCC-CCC--ccchhhEEECcC
Confidence 00 00 012467777777776666661 46777788887777543 332 246777888777
Q ss_pred CcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEEEe
Q 044062 248 MSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLVIQ 327 (567)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~ 327 (567)
|. +..++. .+++|++|+++++ .++.. + ..+++|++|++++| .++ .+|..+++|+.|+++
T Consensus 211 N~-l~~l~~---------~~~~L~~L~Ls~N-~L~~l-----p---~~l~~L~~L~Ls~N-~L~-~lp~~~~~L~~L~Ls 269 (622)
T 3g06_A 211 NR-LTSLPA---------LPSGLKELIVSGN-RLTSL-----P---VLPSELKELMVSGN-RLT-SLPMLPSGLLSLSVY 269 (622)
T ss_dssp SC-CSSCCC---------CCTTCCEEECCSS-CCSCC-----C---CCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECC
T ss_pred Cc-ccccCC---------CCCCCCEEEccCC-ccCcC-----C---CCCCcCcEEECCCC-CCC-cCCcccccCcEEeCC
Confidence 64 333221 1577788887765 22221 2 34577888888874 666 566677778888888
Q ss_pred cch--hhhhhcCCCCCcceEEecCCCCccc
Q 044062 328 ECK--ELLVSITSLPALCKLEIDGCKKVVW 355 (567)
Q Consensus 328 ~~~--~l~~~~~~~~~L~~L~l~~~~~~~~ 355 (567)
+|. .+...+..+++|+.|++++|+....
T Consensus 270 ~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 270 RNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp SSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 775 2334556678888888888876544
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=9.3e-19 Score=173.86 Aligned_cols=105 Identities=18% Similarity=0.281 Sum_probs=87.5
Q ss_pred hhccccceEEEecCCCCCccccccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhcc-cccccccccc
Q 044062 18 LFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKLC-ADMGNLTKLH 95 (567)
Q Consensus 18 ~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~ 95 (567)
-..|....+.+.+++.++.+|..+. ++|++|++++|.++.+|. .+..+++|++|++++| .++.++ ..++++++|+
T Consensus 27 ~~~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CCEECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred CCCCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCC
Confidence 3456666778999999999987765 489999999999998865 6999999999999998 677665 4599999999
Q ss_pred eeeccCcccccccccc-ccccccccccCceEe
Q 044062 96 HLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVV 126 (567)
Q Consensus 96 ~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~ 126 (567)
+|++++| .+..+|.. +.++++|+.|++..+
T Consensus 104 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 104 HLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp EEECCSS-CCSSCCHHHHTTCTTCSEEECTTC
T ss_pred EEECCCC-cCCcCCHhHhCCCccCCEEECCCC
Confidence 9999999 78888876 788888888876544
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.3e-19 Score=177.06 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=73.6
Q ss_pred hhhh-hhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhccccccc
Q 044062 13 SILP-KLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGN 90 (567)
Q Consensus 13 ~~~~-~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~ 90 (567)
..+. .+..+++|++|++++|.++.++ ..+..+++|++|++++|.++..+. +..+++|++|++++| .++.++ .
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~ 97 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----V 97 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----E
T ss_pred hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----C
Confidence 3444 4566678888888888888764 567888888888888888876654 778888888888887 555443 3
Q ss_pred ccccceeeccCccccccccccccccccccccCceE
Q 044062 91 LTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFV 125 (567)
Q Consensus 91 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~ 125 (567)
.++|++|++++| .+..++.. .+++|+.|++..
T Consensus 98 ~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~ 129 (317)
T 3o53_A 98 GPSIETLHAANN-NISRVSCS--RGQGKKNIYLAN 129 (317)
T ss_dssp CTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCS
T ss_pred CCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCC
Confidence 478888888888 66665543 245566665443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2e-18 Score=177.47 Aligned_cols=214 Identities=18% Similarity=0.234 Sum_probs=160.1
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccccHH-HHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~ 78 (567)
|++|++++ ..|..|.++++|++|++++|.++.++ ..|..+++|+.|+|++|.++.+|.. +..+++|++|+|++|
T Consensus 82 L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 82 LMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp CCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred CcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 56788877 55668999999999999999999875 6789999999999999999988654 889999999999999
Q ss_pred cchhhccc-ccccccccceeeccCcccccccccc-ccccccccccCceEeccCCCCCccccccccccccceeeccccccc
Q 044062 79 DRLEKLCA-DMGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENEN 156 (567)
Q Consensus 79 ~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 156 (567)
.++.+|. .+.++++|+.|++++|..++.++.. +.++++|+.|++..+....
T Consensus 158 -~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------------------------- 210 (452)
T 3zyi_A 158 -PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-------------------------- 210 (452)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--------------------------
T ss_pred -CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--------------------------
Confidence 6778876 4899999999999997688888764 7788888877654332111
Q ss_pred ccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCc-ccccCCCCCccceEEEecCCCcccCC-CC
Q 044062 157 LRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFP-TWLGDSSFSNLVTLKFEDCGMCTVLP-SV 234 (567)
Q Consensus 157 L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~ 234 (567)
++.+..+++|+.|++.++....++ ..+. .+++|+.|++++|.+....+ .+
T Consensus 211 --------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 211 --------------------------MPNLTPLVGLEELEMSGNHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp --------------------------CCCCTTCTTCCEEECTTSCCSEECGGGGT--TCTTCCEEECTTSCCCEECTTTT
T ss_pred --------------------------cccccccccccEEECcCCcCcccCccccc--CccCCCEEEeCCCcCceECHHHh
Confidence 112444567777777777666553 3333 57778888888877665544 46
Q ss_pred CCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccc
Q 044062 235 GQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQ 279 (567)
Q Consensus 235 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 279 (567)
..+++|++|++++|. +..++...+.. +++|+.|++++++
T Consensus 263 ~~l~~L~~L~L~~N~-l~~~~~~~~~~-----l~~L~~L~L~~Np 301 (452)
T 3zyi_A 263 DGLASLVELNLAHNN-LSSLPHDLFTP-----LRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTSSTT-----CTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCc-CCccChHHhcc-----ccCCCEEEccCCC
Confidence 677888888888773 44444443322 7788888887764
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=4.2e-21 Score=198.35 Aligned_cols=361 Identities=17% Similarity=0.134 Sum_probs=233.0
Q ss_pred CCccccccchhhhhhh-hhhccccceEEEecCCCCC-----ccccccccccccceeeccCCCcccc-cHH-HHccc----
Q 044062 1 MLSNRLHGYLALSILP-KLFKLQRLRVFSLRGYRIS-----ELPDSVGDLRYLRHLNLSGTEIKTL-PES-VNKLY---- 68 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~-----~l~~~~~~l~~L~~L~L~~~~l~~l-p~~-~~~l~---- 68 (567)
|++|+++. .... .+..+++|++|++++|.++ .++..+..+++|++|++++|.+.+. +.. ...++
T Consensus 10 Ls~~~l~~----~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 85 (461)
T 1z7x_W 10 IQCEELSD----ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85 (461)
T ss_dssp EESCCCCH----HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred hhhcccCc----hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence 35666665 2233 3788999999999999988 3456778899999999999998853 334 44566
Q ss_pred cCceeeccCccchh-----hcccccccccccceeeccCccccccc-cccc-----cccccccccCceEeccCCCC---Cc
Q 044062 69 NLHTLLLEDCDRLE-----KLCADMGNLTKLHHLNNSNTYSLEEM-PVGI-----GKLTCLQTLSNFVVGKDSGL---RL 134 (567)
Q Consensus 69 ~L~~L~L~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~-----~~l~~L~~L~~~~~~~~~~~---~~ 134 (567)
+|++|++++| .++ .++..+.++++|++|++++| .+... +..+ ...++|+.|++..+...... ..
T Consensus 86 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred ceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 6999999999 444 56777899999999999999 55532 2222 23457888876555332211 01
Q ss_pred cccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCC-CCCCCcEEEEeecCCCC-----Cccc
Q 044062 135 PELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLK-PHKNLEQFGICGYGGTK-----FPTW 208 (567)
Q Consensus 135 ~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~-----~~~~ 208 (567)
..+..++ +|++|++++|.... .........+. ..++|++|++.++.... ++..
T Consensus 164 ~~l~~~~--------------~L~~L~L~~n~i~~-------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 164 SVLRAKP--------------DFKELTVSNNDINE-------AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp HHHHHCT--------------TCCEEECCSSBCHH-------HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred HHHhhCC--------------CCCEEECcCCCcch-------HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 2233344 88899987742211 01111112221 24689999999987765 3444
Q ss_pred ccCCCCCccceEEEecCCCcccC-----CC-CCCCCCCcEEEEeCCcceee-----ecccccCCCCCCCCCCcceeeecc
Q 044062 209 LGDSSFSNLVTLKFEDCGMCTVL-----PS-VGQLPSLKHLTVRGMSRVKR-----LGSEFYGDDSPIPFPCLETLRFEV 277 (567)
Q Consensus 209 ~~~~~~~~L~~L~l~~~~~~~~~-----~~-~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~ 277 (567)
+. .+++|+.|++++|.+.... +. ...+++|++|++++|. +.. ++..+ ..+++|++|++++
T Consensus 223 l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l------~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 223 VA--SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVL------RAKESLKELSLAG 293 (461)
T ss_dssp HH--HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHH------HHCTTCCEEECTT
T ss_pred HH--hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHH------hhCCCcceEECCC
Confidence 44 5789999999999765421 11 3357899999999984 444 22221 2279999999998
Q ss_pred cccccccccCCCCCcc-cCCCCccEEEEcCCCCcccC----CCC---CCCcccEEEEecchhhh-------hhcCC-CCC
Q 044062 278 MQEWEDWIPHGSSEGV-ERFPKLRELDILRCSKLQGT----FPE---HLPALQMLVIQECKELL-------VSITS-LPA 341 (567)
Q Consensus 278 ~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~----~~~---~l~~L~~L~i~~~~~l~-------~~~~~-~~~ 341 (567)
+. +.+.....+...+ ...++|++|++++| .+++. ++. .+++|++|++++|.... ..+.. .++
T Consensus 294 n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 294 NE-LGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp CC-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CC-CchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 74 2221111111000 23479999999997 45533 222 36899999999985321 22222 679
Q ss_pred cceEEecCCCCcc----c----cccCCCCCcccccccCCCccccc-cCCCCCCCCCCcCeEEEccCC
Q 044062 342 LCKLEIDGCKKVV----W----RSATDHLGSQNSVVCRDTSNQVF-LAGPLKPRIPKLEELEIKNIK 399 (567)
Q Consensus 342 L~~L~l~~~~~~~----~----~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 399 (567)
|++|++++|.... . ...+++|+.|++++|........ .........++|+.|.+.++.
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 9999999998764 2 45689999999999976543110 000112334578888887765
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=176.78 Aligned_cols=214 Identities=17% Similarity=0.258 Sum_probs=157.7
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccccH-HHHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~ 78 (567)
|++|++.+ ..+..|.++++|++|+|++|.++.++ .+|..+++|+.|+|++|.++.+|. .|..+++|++|+|++|
T Consensus 71 L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 71 LHENQIQI----IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp CCSCCCCE----ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred ccCCcCCe----eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 46777776 44568999999999999999999875 678999999999999999999865 5899999999999999
Q ss_pred cchhhccc-ccccccccceeeccCcccccccccc-ccccccccccCceEeccCCCCCccccccccccccceeeccccccc
Q 044062 79 DRLEKLCA-DMGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENEN 156 (567)
Q Consensus 79 ~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 156 (567)
.++.++. .+.++++|+.|++++|..+..++.. +.++++|+.|++..+... .
T Consensus 147 -~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---~----------------------- 199 (440)
T 3zyj_A 147 -PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---E----------------------- 199 (440)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---S-----------------------
T ss_pred -cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---c-----------------------
Confidence 6777776 4899999999999997678877764 788888888865443211 1
Q ss_pred ccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCc-ccccCCCCCccceEEEecCCCcccCC-CC
Q 044062 157 LRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFP-TWLGDSSFSNLVTLKFEDCGMCTVLP-SV 234 (567)
Q Consensus 157 L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~ 234 (567)
++.+..+++|+.|++.++....++ ..+. .+++|+.|++++|.+....+ .+
T Consensus 200 --------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 200 --------------------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp --------------------------CCCCTTCSSCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTSS
T ss_pred --------------------------ccccCCCcccCEEECCCCccCccChhhhc--cCccCCEEECCCCceeEEChhhh
Confidence 112344566777777766665553 2333 57777777777777665544 46
Q ss_pred CCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccc
Q 044062 235 GQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQ 279 (567)
Q Consensus 235 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 279 (567)
..+++|++|++++|. +..++...+. .+++|+.|++++++
T Consensus 252 ~~l~~L~~L~L~~N~-l~~~~~~~~~-----~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHNN-LTLLPHDLFT-----PLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTTTTS-----SCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCC-CCccChhHhc-----cccCCCEEEcCCCC
Confidence 667778888887773 4444443322 26778888887764
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.2e-18 Score=169.50 Aligned_cols=215 Identities=20% Similarity=0.168 Sum_probs=149.5
Q ss_pred CCccccccchhhhhhh-hhhccccceEEEecCCCCCcc---ccccccccccceeeccCCCcccccHHHHccccCceeecc
Q 044062 1 MLSNRLHGYLALSILP-KLFKLQRLRVFSLRGYRISEL---PDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLE 76 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~l---~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~ 76 (567)
|++|++.. +|+ .|.++++|++|++++|.++.+ +..+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 35 L~~n~l~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~ 109 (306)
T 2z66_A 35 LESNKLQS-----LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109 (306)
T ss_dssp CCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred CCCCccCc-----cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECC
Confidence 35566664 666 479999999999999998855 566778999999999999999998889999999999999
Q ss_pred Cccchhhccc--ccccccccceeeccCccccccc-cccccccccccccCceEeccCCCCCccccccccccccceeecccc
Q 044062 77 DCDRLEKLCA--DMGNLTKLHHLNNSNTYSLEEM-PVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLE 153 (567)
Q Consensus 77 ~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~ 153 (567)
+| .++.++. .+..+++|++|++++| .+... +..+.++++|+.|++..+......
T Consensus 110 ~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------- 166 (306)
T 2z66_A 110 HS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENF--------------------- 166 (306)
T ss_dssp TS-EEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGGE---------------------
T ss_pred CC-cccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcccccc---------------------
Confidence 98 6777764 5899999999999999 55544 445778888888865433211100
Q ss_pred cccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCC-cccccCCCCCccceEEEecCCCcccCC
Q 044062 154 NENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKF-PTWLGDSSFSNLVTLKFEDCGMCTVLP 232 (567)
Q Consensus 154 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~ 232 (567)
....+..+++|+.|++.++....+ +..+. .+++|+.|++++|.+.+..+
T Consensus 167 ----------------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 167 ----------------------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp ----------------------------ECSCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCSBCCS
T ss_pred ----------------------------chhHHhhCcCCCEEECCCCCcCCcCHHHhc--CCCCCCEEECCCCccCccCh
Confidence 112244456677777766665555 33333 56677777777777554433
Q ss_pred -CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCC-CCcceeeecccc
Q 044062 233 -SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPF-PCLETLRFEVMQ 279 (567)
Q Consensus 233 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 279 (567)
.+..+++|++|++++|......+..+.. + ++|++|++++++
T Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQH------FPSSLAFLNLTQND 259 (306)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCSSSSCCC------CCTTCCEEECTTCC
T ss_pred hhccCcccCCEeECCCCCCcccCHHHHHh------hhccCCEEEccCCC
Confidence 3556777777777777433333222211 4 377777777664
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=2.4e-19 Score=175.18 Aligned_cols=240 Identities=15% Similarity=0.131 Sum_probs=148.8
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDR 80 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 80 (567)
|++|.+++ ..|..|..+++|++|++++|.++.+++ +..+++|++|++++|.++.+| ..++|++|++++| .
T Consensus 41 L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n-~ 110 (317)
T 3o53_A 41 LSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANN-N 110 (317)
T ss_dssp CTTSCCCC----CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSS-C
T ss_pred CcCCccCc----CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECCCC-c
Confidence 56778877 555689999999999999999987654 899999999999999998876 3489999999999 6
Q ss_pred hhhcccccccccccceeeccCccccccccc-cccccccccccCceEeccCCCCCccccccccccccceeecccccccccc
Q 044062 81 LEKLCADMGNLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRE 159 (567)
Q Consensus 81 ~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~ 159 (567)
+..++. ..+++|++|++++| .+..++. .+.++++|+.|++..+..... .+..+
T Consensus 111 l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~---------------------- 164 (317)
T 3o53_A 111 ISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAEL---------------------- 164 (317)
T ss_dssp CSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEE-EGGGG----------------------
T ss_pred cCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcc-cHHHH----------------------
Confidence 666653 44789999999999 7777654 588888888887654422110 00111
Q ss_pred eEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCC
Q 044062 160 LLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPS 239 (567)
Q Consensus 160 l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 239 (567)
...+++|+.|++.++....++... .+++|+.|++++|.+....+.+..+++
T Consensus 165 --------------------------~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 165 --------------------------AASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (317)
T ss_dssp --------------------------GGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred --------------------------hhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhcccCc
Confidence 012244555555555444443322 255566666666554444334455556
Q ss_pred CcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcCCCCcccCCCC
Q 044062 240 LKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILRCSKLQGTFPE 316 (567)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 316 (567)
|++|++++|. +..++..+. .+++|+.|++++++...... +..+..+++|+.+++.++..+++..+.
T Consensus 216 L~~L~L~~N~-l~~l~~~~~------~l~~L~~L~l~~N~~~~~~~----~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 216 VTWISLRNNK-LVLIEKALR------FSQNLEHFDLRGNGFHCGTL----RDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CSEEECTTSC-CCEECTTCC------CCTTCCEEECTTCCCBHHHH----HHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccEEECcCCc-ccchhhHhh------cCCCCCEEEccCCCccCcCH----HHHHhccccceEEECCCchhccCCchh
Confidence 6666666553 333333221 15566666665553321111 111134556666666655555544443
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=3.6e-18 Score=164.22 Aligned_cols=95 Identities=24% Similarity=0.299 Sum_probs=41.9
Q ss_pred eEEEecCCCCCccccccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhc-ccccccccccceeeccCc
Q 044062 25 RVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKL-CADMGNLTKLHHLNNSNT 102 (567)
Q Consensus 25 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l-~~~~~~l~~L~~L~l~~~ 102 (567)
++++.+++.++.+|..+ .++|+.|++++|.++.+| ..+..+++|++|++++| .++.+ |..++.+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 34444444444444332 234555555555554443 23444555555555544 33333 233444555555555554
Q ss_pred cccccc-cccccccccccccC
Q 044062 103 YSLEEM-PVGIGKLTCLQTLS 122 (567)
Q Consensus 103 ~~~~~l-p~~~~~l~~L~~L~ 122 (567)
..+..+ |..+.++++|+.|+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEE
T ss_pred CCccccCHHHhcCCcCCCEEE
Confidence 223433 22344444444443
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=2.8e-18 Score=165.01 Aligned_cols=210 Identities=22% Similarity=0.203 Sum_probs=149.7
Q ss_pred chhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhc-c
Q 044062 9 YLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKL-C 85 (567)
Q Consensus 9 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l-~ 85 (567)
+.+..+|..+. ++|++|++++|.++.++ ..|..+++|++|++++|.++.+ |..+..+++|++|++++|..++.+ |
T Consensus 21 ~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 21 QGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCcccCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 33345676554 69999999999999886 5689999999999999999987 778999999999999999547777 5
Q ss_pred cccccccccceeeccCcccccccc-ccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEe
Q 044062 86 ADMGNLTKLHHLNNSNTYSLEEMP-VGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRW 164 (567)
Q Consensus 86 ~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~ 164 (567)
..++.+++|++|++++| .+..++ ..+.++++|+.|++..+.... .
T Consensus 99 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~-------------------------------- 144 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA-L-------------------------------- 144 (285)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-C--------------------------------
T ss_pred HHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccc-c--------------------------------
Confidence 56899999999999999 677664 458888888888754432110 0
Q ss_pred eecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCccc-ccCCCCCccceEEEecCCCcccCC-CCCCCCCCcE
Q 044062 165 TCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTW-LGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKH 242 (567)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~ 242 (567)
....+..+++|++|++.++....++.. +. .+++|+.|++++|.+.+..+ .+..+++|++
T Consensus 145 -----------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 145 -----------------PDDTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp -----------------CTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred -----------------CHhHhccCCCccEEECCCCcccccCHHHhc--CccccCEEECCCCcccccCHhHccCcccccE
Confidence 011234456677777776666655543 32 56777777777777665544 4666777777
Q ss_pred EEEeCCcceeeecccccCCCCCCCCCCcceeeecccc
Q 044062 243 LTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQ 279 (567)
Q Consensus 243 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 279 (567)
|++++|. +..++...+.. +++|++|++++++
T Consensus 206 L~l~~n~-l~~~~~~~~~~-----l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 206 LYLFANN-LSALPTEALAP-----LRALQYLRLNDNP 236 (285)
T ss_dssp EECCSSC-CSCCCHHHHTT-----CTTCCEEECCSSC
T ss_pred eeCCCCc-CCcCCHHHccc-----CcccCEEeccCCC
Confidence 7777764 33444332222 6777777777664
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=4.1e-17 Score=158.37 Aligned_cols=192 Identities=19% Similarity=0.237 Sum_probs=125.9
Q ss_pred hhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccce
Q 044062 17 KLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHH 96 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 96 (567)
....+++|++|+++++.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++| .++.++ .++.+++|+.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCE
T ss_pred cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCE
Confidence 3556789999999999998885 68889999999999999998877 899999999999998 577775 5889999999
Q ss_pred eeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccc
Q 044062 97 LNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREA 176 (567)
Q Consensus 97 L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 176 (567)
|++++| .+..++. +.++++|+.|++..+.... +..+..++ +|+.|+++.|....
T Consensus 112 L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~---~~~l~~l~--------------~L~~L~l~~n~l~~------- 165 (308)
T 1h6u_A 112 LDLTST-QITDVTP-LAGLSNLQVLYLDLNQITN---ISPLAGLT--------------NLQYLSIGNAQVSD------- 165 (308)
T ss_dssp EECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCC---CGGGGGCT--------------TCCEEECCSSCCCC-------
T ss_pred EECCCC-CCCCchh-hcCCCCCCEEECCCCccCc---CccccCCC--------------CccEEEccCCcCCC-------
Confidence 999999 7777764 7888888888765443211 22233333 55555554431111
Q ss_pred hhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCC
Q 044062 177 ETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGM 248 (567)
Q Consensus 177 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 248 (567)
+..+..+++|+.|++.++....++. +. .+++|+.|++++|.+.... ++..+++|++|++++|
T Consensus 166 ------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 166 ------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp ------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEE
T ss_pred ------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-cccCCCCCCEEEccCC
Confidence 1113444555555555555544443 11 3555555555555533222 3444555555555554
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=8.1e-17 Score=154.69 Aligned_cols=176 Identities=21% Similarity=0.227 Sum_probs=124.6
Q ss_pred hhhccccceEEEecCCCCCccccccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhcccccccccccc
Q 044062 17 KLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLH 95 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 95 (567)
.+.++++++.+++++++++.+|..+. +++++|++++|.++.+ |..+..+++|++|++++| .++.++.. +.+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCC
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCC
Confidence 36788899999999999999987765 6899999999999977 567999999999999998 67777654 8899999
Q ss_pred eeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCcc
Q 044062 96 HLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSRE 175 (567)
Q Consensus 96 ~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 175 (567)
+|++++| .+..+|..+.++++|+.|++..+.... +
T Consensus 81 ~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~-----------------------------l--------------- 115 (290)
T 1p9a_G 81 TLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTS-----------------------------L--------------- 115 (290)
T ss_dssp EEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCC-----------------------------C---------------
T ss_pred EEECCCC-cCCcCchhhccCCCCCEEECCCCcCcc-----------------------------c---------------
Confidence 9999999 788888877777777777654332100 0
Q ss_pred chhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCC-CCCCCCCcEEEEeCC
Q 044062 176 AETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPS-VGQLPSLKHLTVRGM 248 (567)
Q Consensus 176 ~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 248 (567)
....+..+++|+.|++.++....++..... .+++|+.|++++|.+....+. +..+++|++|++++|
T Consensus 116 ------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 116 ------PLGALRGLGELQELYLKGNELKTLPPGLLT-PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp ------CSSTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ------CHHHHcCCCCCCEEECCCCCCCccChhhcc-cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence 011234445666666666666555543321 456666666666664433332 345666666666665
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=1e-17 Score=163.19 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=49.7
Q ss_pred CCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCcceeeecccccCCCCCCC
Q 044062 188 PHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIP 266 (567)
Q Consensus 188 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 266 (567)
.+++|+.|++.++.....+....-..+++|+.|++++|.+. .+| .+. ++|++|++++|. ++.++. + ..
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~------~~ 294 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR-LDRNPS-P------DE 294 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC-CCSCCC-T------TT
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC-CCCChh-H------hh
Confidence 34677777777777665432111114677888888887755 444 333 678888888774 444433 2 12
Q ss_pred CCCcceeeecccc
Q 044062 267 FPCLETLRFEVMQ 279 (567)
Q Consensus 267 ~~~L~~L~l~~~~ 279 (567)
+++|++|++++++
T Consensus 295 l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 295 LPQVGNLSLKGNP 307 (312)
T ss_dssp SCEEEEEECTTCT
T ss_pred CCCCCEEeccCCC
Confidence 7888888887764
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=3.6e-17 Score=156.39 Aligned_cols=211 Identities=20% Similarity=0.132 Sum_probs=134.7
Q ss_pred hhhhhhhhhccccceEEEecCCCCCcccc-ccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhcc-cc
Q 044062 11 ALSILPKLFKLQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKLC-AD 87 (567)
Q Consensus 11 ~~~~~~~~~~l~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~-~~ 87 (567)
...+|..++ ++|++|++++|+++.+++ .|..+++|++|++++|.++.++. .+..+++|++|++++| .++.++ ..
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGA 95 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhh
Confidence 345676665 579999999999998764 78899999999999999998754 6889999999999998 566665 45
Q ss_pred cccccccceeeccCccccccccc-cccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeee
Q 044062 88 MGNLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTC 166 (567)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~ 166 (567)
++++++|++|++++| .+..++. .+.++++|+.|++..+..........+..++ +|+.|++++|.
T Consensus 96 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~--------------~L~~L~Ls~N~ 160 (276)
T 2z62_A 96 FSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT--------------NLEHLDLSSNK 160 (276)
T ss_dssp TTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT--------------TCCEEECCSSC
T ss_pred hcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCchhhccCC--------------CCCEEECCCCC
Confidence 889999999999999 6776665 5888888888876655432222233444455 66666665532
Q ss_pred cCCCCCCccchhhhhhhccCCCCCCCc-EEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCC-CCCCCCCcEEE
Q 044062 167 STDGSSSREAETEMGVLDMLKPHKNLE-QFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPS-VGQLPSLKHLT 244 (567)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 244 (567)
... .+. ..+..+..++.+. +|++.++....++.... ...+|+.|++++|.+....+. +..+++|++|+
T Consensus 161 l~~--~~~------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 161 IQS--IYC------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp CCE--ECG------GGGHHHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred CCc--CCH------HHhhhhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence 111 000 0111121222222 55555555555544333 233566666666664433332 34566666666
Q ss_pred EeCCc
Q 044062 245 VRGMS 249 (567)
Q Consensus 245 l~~~~ 249 (567)
+++|.
T Consensus 231 l~~N~ 235 (276)
T 2z62_A 231 LHTNP 235 (276)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 66553
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1.1e-16 Score=152.51 Aligned_cols=101 Identities=26% Similarity=0.378 Sum_probs=56.6
Q ss_pred hhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccc-cccccccce
Q 044062 18 LFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKLHH 96 (567)
Q Consensus 18 ~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~ 96 (567)
...+++|+.|+++++.++.+ +.+..+++|++|++++|.++.++ .+..+++|++|++++| .++.++.. ++++++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 44555666666666665554 34555666666666666665543 4556666666666665 44444443 456666666
Q ss_pred eeccCcccccccccc-ccccccccccC
Q 044062 97 LNNSNTYSLEEMPVG-IGKLTCLQTLS 122 (567)
Q Consensus 97 L~l~~~~~~~~lp~~-~~~l~~L~~L~ 122 (567)
|++++| .+..++.. +.++++|+.|+
T Consensus 114 L~L~~n-~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 114 LVLVEN-QLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp EECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred EECCCC-cCCccCHHHhccCCCCCEEE
Confidence 666666 44444433 34444444443
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=5.2e-18 Score=165.24 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=58.0
Q ss_pred hccccceEEEecCCCCCccccccccccccceeeccCCCcc--cccHHHH-------ccccCceeeccCccchhhccccc-
Q 044062 19 FKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIK--TLPESVN-------KLYNLHTLLLEDCDRLEKLCADM- 88 (567)
Q Consensus 19 ~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~--~lp~~~~-------~l~~L~~L~L~~~~~~~~l~~~~- 88 (567)
...++|+.+++++|.+ .+|..+... |+.|++++|.+. .+|..+. .+++|++|++++|...+.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 4455566666666666 555555433 666666666664 2444444 56666777766663223455554
Q ss_pred -ccccccceeeccCcccccccccccccc-----ccccccCce
Q 044062 89 -GNLTKLHHLNNSNTYSLEEMPVGIGKL-----TCLQTLSNF 124 (567)
Q Consensus 89 -~~l~~L~~L~l~~~~~~~~lp~~~~~l-----~~L~~L~~~ 124 (567)
+.+++|++|++++| .+...|..+.++ ++|++|++.
T Consensus 117 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~ 157 (312)
T 1wwl_A 117 EATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIA 157 (312)
T ss_dssp SCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEE
T ss_pred HhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEee
Confidence 66666677776666 555555445544 444444433
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1e-17 Score=173.09 Aligned_cols=245 Identities=13% Similarity=0.102 Sum_probs=178.8
Q ss_pred hhhhhhhc----cccceEEEecCCCCCccc-cccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccc
Q 044062 13 SILPKLFK----LQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCAD 87 (567)
Q Consensus 13 ~~~~~~~~----l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~ 87 (567)
.+|..+.. +++|++|++++|.++.++ ..|..+++|++|+|++|.++..+. +..+++|++|+|++| .++.+|.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~- 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV- 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC-
Confidence 34444444 448999999999999875 678999999999999999987654 899999999999999 6666553
Q ss_pred cccccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeec
Q 044062 88 MGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCS 167 (567)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~ 167 (567)
.++|+.|++++| .+..++.. .+++|+.|++..+.... .....+..++ +|+.|++++|..
T Consensus 98 ---~~~L~~L~L~~N-~l~~~~~~--~l~~L~~L~L~~N~l~~-~~~~~~~~l~--------------~L~~L~Ls~N~l 156 (487)
T 3oja_A 98 ---GPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNKITM-LRDLDEGCRS--------------RVQYLDLKLNEI 156 (487)
T ss_dssp ---CTTCCEEECCSS-CCCCEEEC--CCSSCEEEECCSSCCCS-GGGBCGGGGS--------------SEEEEECTTSCC
T ss_pred ---CCCcCEEECcCC-cCCCCCcc--ccCCCCEEECCCCCCCC-CCchhhcCCC--------------CCCEEECCCCCC
Confidence 489999999999 77777653 46788888766554322 1222345555 888888877522
Q ss_pred CCCCCCccchhhhhhhccCC-CCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEe
Q 044062 168 TDGSSSREAETEMGVLDMLK-PHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVR 246 (567)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 246 (567)
.. .....+. .+++|+.|++.++....++... .+++|+.|++++|.+.+..+.+..+++|+.|+++
T Consensus 157 ~~-----------~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 157 DT-----------VNFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (487)
T ss_dssp CE-----------EEGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred CC-----------cChHHHhhhCCcccEEecCCCccccccccc---cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEec
Confidence 21 0122232 4689999999999888776544 4889999999999987776778889999999999
Q ss_pred CCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCCCcccCCCCccEEEEcC
Q 044062 247 GMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSSEGVERFPKLRELDILR 306 (567)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 306 (567)
+|. +..++..+. .+++|+.|++++++...... +..+..++.|+.+++..
T Consensus 223 ~N~-l~~lp~~l~------~l~~L~~L~l~~N~l~c~~~----~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 223 NNK-LVLIEKALR------FSQNLEHFDLRGNGFHCGTL----RDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp TSC-CCEECTTCC------CCTTCCEEECTTCCBCHHHH----HHHHTTCHHHHHHHHHH
T ss_pred CCc-Ccccchhhc------cCCCCCEEEcCCCCCcCcch----HHHHHhCCCCcEEeccc
Confidence 985 455555432 28999999999876432211 11125577788777764
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=5.2e-17 Score=167.86 Aligned_cols=216 Identities=15% Similarity=0.082 Sum_probs=158.0
Q ss_pred cccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhcccccccccccceeeccCcccccccccccccccccccc
Q 044062 43 DLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTL 121 (567)
Q Consensus 43 ~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 121 (567)
.+++|+.|+|++|.++.+ |..|..+++|++|+|++| .+...++ ++.+++|++|++++| .+..+|.. ++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN-YVQELLVG----PSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSS-EEEEEEEC----TTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCC-cCCCCCCC----CCcCEE
Confidence 445999999999999987 567999999999999999 5665554 999999999999999 78877643 788888
Q ss_pred CceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecC
Q 044062 122 SNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYG 201 (567)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 201 (567)
++..+..... . ...++ +|+.|++++|.... .....+..+++|+.|++.++.
T Consensus 105 ~L~~N~l~~~---~-~~~l~--------------~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 105 HAANNNISRV---S-CSRGQ--------------GKKNIYLANNKITM-----------LRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp ECCSSCCCCE---E-ECCCS--------------SCEEEECCSSCCCS-----------GGGBCGGGGSSEEEEECTTSC
T ss_pred ECcCCcCCCC---C-ccccC--------------CCCEEECCCCCCCC-----------CCchhhcCCCCCCEEECCCCC
Confidence 7655432211 1 11223 78888887753322 112234556899999999998
Q ss_pred CCCC-cccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeeccccc
Q 044062 202 GTKF-PTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQE 280 (567)
Q Consensus 202 ~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 280 (567)
.... +..+. ..+++|+.|++++|.+.+. +....+++|++|++++|. +..++..+.. +++|+.|+++++.
T Consensus 156 l~~~~~~~l~-~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~------l~~L~~L~Ls~N~- 225 (487)
T 3oja_A 156 IDTVNFAELA-ASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPEFQS------AAGVTWISLRNNK- 225 (487)
T ss_dssp CCEEEGGGGG-GGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGGGGG------GTTCSEEECTTSC-
T ss_pred CCCcChHHHh-hhCCcccEEecCCCccccc-cccccCCCCCEEECCCCC-CCCCCHhHcC------CCCccEEEecCCc-
Confidence 8764 33332 1578999999999996655 555569999999999985 5555555433 8999999999874
Q ss_pred ccccccCCCCCcccCCCCccEEEEcCCCC
Q 044062 281 WEDWIPHGSSEGVERFPKLRELDILRCSK 309 (567)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 309 (567)
+.. ++..+..+++|+.|++++++.
T Consensus 226 l~~-----lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 226 LVL-----IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCE-----ECTTCCCCTTCCEEECTTCCB
T ss_pred Ccc-----cchhhccCCCCCEEEcCCCCC
Confidence 332 233346789999999999643
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=1.3e-16 Score=151.85 Aligned_cols=196 Identities=19% Similarity=0.281 Sum_probs=125.8
Q ss_pred cceEEEecCCCCCccccccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhcccc-cccccccceeecc
Q 044062 23 RLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKLHHLNNS 100 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~l~ 100 (567)
+.+.+++++++++.+|..+. ++++.|++++|.++.+|. .|..+++|++|++++| .++.+|.. ++++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 46788888888888776654 578888888888887754 5788888888888887 66777665 5778888888888
Q ss_pred Ccccccccccc-ccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhh
Q 044062 101 NTYSLEEMPVG-IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETE 179 (567)
Q Consensus 101 ~~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 179 (567)
+| .+..+|.. +.++++|+.|++..+.....
T Consensus 94 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------------------------------ 124 (270)
T 2o6q_A 94 DN-KLQALPIGVFDQLVNLAELRLDRNQLKSL------------------------------------------------ 124 (270)
T ss_dssp SS-CCCCCCTTTTTTCSSCCEEECCSSCCCCC------------------------------------------------
T ss_pred CC-cCCcCCHhHcccccCCCEEECCCCccCee------------------------------------------------
Confidence 88 67777654 56677777775443321000
Q ss_pred hhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCcceeeecccc
Q 044062 180 MGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEF 258 (567)
Q Consensus 180 ~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~ 258 (567)
....+..+++|+.|++.++....++..... .+++|+.|++++|.+....+ .+..+++|++|++++|. +..++...
T Consensus 125 --~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~ 200 (270)
T 2o6q_A 125 --PPRVFDSLTKLTYLSLGYNELQSLPKGVFD-KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGA 200 (270)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT
T ss_pred --CHHHhCcCcCCCEEECCCCcCCccCHhHcc-CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHH
Confidence 011134445666666666666555543221 46677777777776554443 25566777777777663 34444333
Q ss_pred cCCCCCCCCCCcceeeecccc
Q 044062 259 YGDDSPIPFPCLETLRFEVMQ 279 (567)
Q Consensus 259 ~~~~~~~~~~~L~~L~l~~~~ 279 (567)
+. .+++|+.|++++++
T Consensus 201 ~~-----~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 201 FD-----SLEKLKMLQLQENP 216 (270)
T ss_dssp TT-----TCTTCCEEECCSSC
T ss_pred hc-----cccCCCEEEecCCC
Confidence 22 26777777777654
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.5e-16 Score=148.52 Aligned_cols=76 Identities=24% Similarity=0.343 Sum_probs=38.0
Q ss_pred ccceeeccCCCcccccH-HHHccccCceeeccCccchhhccc-ccccccccceeeccC-ccccccccc-ccccccccccc
Q 044062 46 YLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKLCA-DMGNLTKLHHLNNSN-TYSLEEMPV-GIGKLTCLQTL 121 (567)
Q Consensus 46 ~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~-~~~~l~~L~~L~l~~-~~~~~~lp~-~~~~l~~L~~L 121 (567)
+|+.|++++|.++.+|. .|..+++|++|++++|..++.++. .|+++++|++|++++ | .+..+|. .+.++++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEE
Confidence 45555555555555543 355555555555555532444443 355555555555555 3 4444442 23444444444
Q ss_pred C
Q 044062 122 S 122 (567)
Q Consensus 122 ~ 122 (567)
+
T Consensus 111 ~ 111 (239)
T 2xwt_C 111 G 111 (239)
T ss_dssp E
T ss_pred e
Confidence 3
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=2.2e-16 Score=150.38 Aligned_cols=182 Identities=24% Similarity=0.315 Sum_probs=104.3
Q ss_pred hhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccccHH-HHccccCceeeccCccchhhcccc-cc
Q 044062 13 SILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDCDRLEKLCAD-MG 89 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~~-~~ 89 (567)
.+|..++ ++++.|++++|+++.++ .+|..+++|++|++++|.++.+|.. +..+++|++|++++| .++.+|.. ++
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 106 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFD 106 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcc
Confidence 3555444 46677777777766664 3566677777777777776666544 456677777777766 45555543 56
Q ss_pred cccccceeeccCcccccccccc-ccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecC
Q 044062 90 NLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCST 168 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~ 168 (567)
.+++|++|++++| .+..++.. +.++++|+.|++..+.. +.+
T Consensus 107 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-----------------------------~~~-------- 148 (270)
T 2o6q_A 107 QLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNEL-----------------------------QSL-------- 148 (270)
T ss_dssp TCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-----------------------------CCC--------
T ss_pred cccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcC-----------------------------Ccc--------
Confidence 6677777777776 55555443 45555555554332210 000
Q ss_pred CCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeC
Q 044062 169 DGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRG 247 (567)
Q Consensus 169 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 247 (567)
....+..+++|++|++.++....++..... .+++|+.|++++|.+....+ .+..+++|+.|++++
T Consensus 149 -------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 149 -------------PKGVFDKLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp -------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -------------CHhHccCCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 001134446666666666666555543221 46667777777766544333 255566777777766
Q ss_pred Cc
Q 044062 248 MS 249 (567)
Q Consensus 248 ~~ 249 (567)
|.
T Consensus 215 N~ 216 (270)
T 2o6q_A 215 NP 216 (270)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=1.2e-16 Score=153.42 Aligned_cols=185 Identities=22% Similarity=0.205 Sum_probs=146.4
Q ss_pred hhhhhhhhhhccccceEEEecCCCCCcc-ccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhccccc
Q 044062 10 LALSILPKLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADM 88 (567)
Q Consensus 10 ~~~~~~~~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~ 88 (567)
.+..+|+.++ +++++|++++|.++.+ +..|..+++|+.|++++|.++.++.. +.+++|++|++++| .++.+|..+
T Consensus 21 ~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~ 96 (290)
T 1p9a_G 21 NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLG 96 (290)
T ss_dssp CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCT
T ss_pred CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhh
Confidence 3335787766 6999999999999977 46789999999999999999988664 78999999999999 788999889
Q ss_pred ccccccceeeccCccccccccc-cccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeec
Q 044062 89 GNLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCS 167 (567)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~ 167 (567)
..+++|++|++++| .+..+|. .+.++++|+.|++..+.. +.+
T Consensus 97 ~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l-----------------------------~~~------- 139 (290)
T 1p9a_G 97 QTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNEL-----------------------------KTL------- 139 (290)
T ss_dssp TTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCC-----------------------------CCC-------
T ss_pred ccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCC-----------------------------Ccc-------
Confidence 99999999999999 8888875 488888888886543321 100
Q ss_pred CCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeC
Q 044062 168 TDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRG 247 (567)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 247 (567)
....+..+++|+.|++.++....++..... .+++|+.|++++|.+......+...++|+.+++++
T Consensus 140 --------------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 140 --------------PPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp --------------CTTTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred --------------ChhhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 011244567889999988888888765432 68899999999998765555677778899999988
Q ss_pred Ccc
Q 044062 248 MSR 250 (567)
Q Consensus 248 ~~~ 250 (567)
|..
T Consensus 205 Np~ 207 (290)
T 1p9a_G 205 NPW 207 (290)
T ss_dssp CCB
T ss_pred CCc
Confidence 753
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=9.2e-16 Score=143.20 Aligned_cols=86 Identities=17% Similarity=0.272 Sum_probs=57.2
Q ss_pred cceEEEecCCCCCcccc-ccccccccceeeccCCC-cccccH-HHHccccCceeeccCccchhhccc-ccccccccceee
Q 044062 23 RLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTE-IKTLPE-SVNKLYNLHTLLLEDCDRLEKLCA-DMGNLTKLHHLN 98 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~-l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~-~~~~l~~L~~L~ 98 (567)
++++|++++|+++.+++ +|..+++|+.|++++|. ++.++. .|..+++|++|++++|+.++.++. .|+.+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776653 56677777777777775 666644 466777777777776225666654 366777777777
Q ss_pred ccCcccccccc
Q 044062 99 NSNTYSLEEMP 109 (567)
Q Consensus 99 l~~~~~~~~lp 109 (567)
+++| .+..+|
T Consensus 112 l~~n-~l~~lp 121 (239)
T 2xwt_C 112 IFNT-GLKMFP 121 (239)
T ss_dssp EEEE-CCCSCC
T ss_pred CCCC-CCcccc
Confidence 7776 455444
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.7e-17 Score=163.69 Aligned_cols=202 Identities=20% Similarity=0.200 Sum_probs=106.4
Q ss_pred ccceEEEecCCCCCccccccccccccceeeccCCCccc--ccHHHHccccCceeeccCccchhhcccccccccccceeec
Q 044062 22 QRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKT--LPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNN 99 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l 99 (567)
++++.|++++|.+...++.+..+++|+.|++++|.++. +|..+..+++|++|++++|......+..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 55666666666555444444455666666666665542 4555556666666666665322234444555666666666
Q ss_pred cCccccc--cccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccch
Q 044062 100 SNTYSLE--EMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAE 177 (567)
Q Consensus 100 ~~~~~~~--~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 177 (567)
++|..+. .++..+.++++|+.| +++++...
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L---------------------------------------~l~~~~~l--------- 181 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDEL---------------------------------------NLSWCFDF--------- 181 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEE---------------------------------------ECCCCTTC---------
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEE---------------------------------------cCCCCCCc---------
Confidence 6553233 133334444444444 44332000
Q ss_pred hhhhhhccCCCCC-CCcEEEEeecC--C--CCCcccccCCCCCccceEEEecCCC-cc-cCCCCCCCCCCcEEEEeCCcc
Q 044062 178 TEMGVLDMLKPHK-NLEQFGICGYG--G--TKFPTWLGDSSFSNLVTLKFEDCGM-CT-VLPSVGQLPSLKHLTVRGMSR 250 (567)
Q Consensus 178 ~~~~~l~~l~~~~-~L~~L~l~~~~--~--~~~~~~~~~~~~~~L~~L~l~~~~~-~~-~~~~~~~l~~L~~L~l~~~~~ 250 (567)
........+..++ +|++|++.++. . ..++..+. .+++|+.|++++|.. .. ..+.+..+++|++|++++|..
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 0001112233346 77888877763 2 22333333 477788888888773 32 233566678888888887764
Q ss_pred eeeecccccCCCCCCCCCCcceeeeccc
Q 044062 251 VKRLGSEFYGDDSPIPFPCLETLRFEVM 278 (567)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 278 (567)
+.+..... +..+++|++|+++++
T Consensus 260 ~~~~~~~~-----l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLE-----LGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGG-----GGGCTTCCEEECTTS
T ss_pred CCHHHHHH-----HhcCCCCCEEeccCc
Confidence 33332212 222777777777766
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=5.2e-16 Score=153.62 Aligned_cols=101 Identities=25% Similarity=0.339 Sum_probs=65.2
Q ss_pred eEEEecCCCCCccccccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhcccc-cccccccceeeccCc
Q 044062 25 RVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKLHHLNNSNT 102 (567)
Q Consensus 25 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~l~~~ 102 (567)
++++.++++++.+|..+. ++++.|+|++|.++.+|. .|.++++|++|+|++|...+.+|.. |.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 456677777777776553 467777777777777764 3677777777777777434555543 667777665444332
Q ss_pred cccccccc-cccccccccccCceEec
Q 044062 103 YSLEEMPV-GIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 103 ~~~~~lp~-~~~~l~~L~~L~~~~~~ 127 (567)
+.+..++. .+.++++|+.|++..+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred CcccccCchhhhhccccccccccccc
Confidence 26666653 36777777777766554
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=8.4e-16 Score=149.11 Aligned_cols=182 Identities=21% Similarity=0.241 Sum_probs=147.1
Q ss_pred CccccccchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccch
Q 044062 2 LSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRL 81 (567)
Q Consensus 2 ~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~ 81 (567)
++|++.. ++ .+..+++|++|++++|.++.+++ +..+++|++|++++|.++.++ .+..+++|++|++++| .+
T Consensus 49 ~~~~i~~-----l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l 119 (308)
T 1h6u_A 49 FGTGVTT-----IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QI 119 (308)
T ss_dssp TTSCCCC-----CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CC
T ss_pred eCCCccC-----ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CC
Confidence 4455554 44 68999999999999999998866 999999999999999999885 6899999999999999 67
Q ss_pred hhcccccccccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceE
Q 044062 82 EKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELL 161 (567)
Q Consensus 82 ~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~ 161 (567)
+.++. ++.+++|+.|++++| .+..++. +.++++|+.|++..+... .+..+..++ +|+.|+
T Consensus 120 ~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~---~~~~l~~l~--------------~L~~L~ 179 (308)
T 1h6u_A 120 TDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVS---DLTPLANLS--------------KLTTLK 179 (308)
T ss_dssp CCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCC---CCGGGTTCT--------------TCCEEE
T ss_pred CCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCC---CChhhcCCC--------------CCCEEE
Confidence 77765 999999999999999 7888776 889999999987665432 233355555 888999
Q ss_pred EEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCc
Q 044062 162 LRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMC 228 (567)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 228 (567)
+++|.... +..+..+++|++|++.++....++. +. .+++|+.|++++|.+.
T Consensus 180 l~~n~l~~-------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 180 ADDNKISD-------------ISPLASLPNLIEVHLKNNQISDVSP-LA--NTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCSSCCCC-------------CGGGGGCTTCCEEECTTSCCCBCGG-GT--TCTTCCEEEEEEEEEE
T ss_pred CCCCccCc-------------ChhhcCCCCCCEEEccCCccCcccc-cc--CCCCCCEEEccCCeee
Confidence 98753322 1125667899999999999888875 33 6999999999999853
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=6.4e-16 Score=147.72 Aligned_cols=195 Identities=19% Similarity=0.213 Sum_probs=146.7
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCccccc-HHHHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~ 78 (567)
|++|++++ ..+..|.++++|++|++++|+++.++ ..+..+++|+.|++++|.++.++ ..+..+++|++|++++|
T Consensus 35 ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 35 LSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CTTCCCCE----ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCCcccc----cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 46677776 33337999999999999999999876 47899999999999999999875 66999999999999998
Q ss_pred cchhhccc-ccccccccceeeccCcccccc--ccccccccccccccCceEeccCCCCCccccccccccccceeecccccc
Q 044062 79 DRLEKLCA-DMGNLTKLHHLNNSNTYSLEE--MPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENE 155 (567)
Q Consensus 79 ~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 155 (567)
.+..++. .++.+++|++|++++| .+.. +|..+.++++|+.|++..+.... .....+..+.
T Consensus 111 -~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~-------------- 173 (276)
T 2z62_A 111 -NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLH-------------- 173 (276)
T ss_dssp -CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHH--------------
T ss_pred -CccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhh--------------
Confidence 6666655 5899999999999999 6765 67889999999999876654322 1123344444
Q ss_pred ccc----ceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcc
Q 044062 156 NLR----ELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCT 229 (567)
Q Consensus 156 ~L~----~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 229 (567)
+++ .+++++|.... .........+|+.|++.++....++..... .+++|+.|++++|.+..
T Consensus 174 ~L~~l~l~L~ls~n~l~~------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNF------------IQPGAFKEIRLKELALDTNQLKSVPDGIFD-RLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TCTTCCEEEECCSSCCCE------------ECTTSSCSCCEEEEECCSSCCSCCCTTTTT-TCCSCCEEECCSSCBCC
T ss_pred hccccceeeecCCCcccc------------cCccccCCCcccEEECCCCceeecCHhHhc-ccccccEEEccCCcccc
Confidence 444 55555532111 111222334899999999998888765432 68999999999998643
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=1.5e-17 Score=167.27 Aligned_cols=254 Identities=18% Similarity=0.198 Sum_probs=154.2
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCc-----cccccccccccceeeccCCCcc----cccHHH-------
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISE-----LPDSVGDLRYLRHLNLSGTEIK----TLPESV------- 64 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-----l~~~~~~l~~L~~L~L~~~~l~----~lp~~~------- 64 (567)
|.+|+++......++..+.++++|++|++++|.++. ++..+..+++|++|+|++|.+. .+|..+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 346677777777888889999999999999998874 3345778999999999997555 335444
Q ss_pred HccccCceeeccCccchhh-----cccccccccccceeeccCccccccc-----ccccccc---------ccccccCceE
Q 044062 65 NKLYNLHTLLLEDCDRLEK-----LCADMGNLTKLHHLNNSNTYSLEEM-----PVGIGKL---------TCLQTLSNFV 125 (567)
Q Consensus 65 ~~l~~L~~L~L~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~l-----p~~~~~l---------~~L~~L~~~~ 125 (567)
..+++|++|+|++| .++. +|..+.++++|++|++++| .+... +..+..+ ++|+
T Consensus 91 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~------ 162 (386)
T 2ca6_A 91 LKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLR------ 162 (386)
T ss_dssp TTCTTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCC------
T ss_pred hhCCcccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCc------
Confidence 68899999999998 4443 6777889999999999999 55422 2222222 4444
Q ss_pred eccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCC-
Q 044062 126 VGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTK- 204 (567)
Q Consensus 126 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~- 204 (567)
.|++++|.... .........+..+++|++|++.++....
T Consensus 163 ---------------------------------~L~L~~n~l~~-------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 202 (386)
T 2ca6_A 163 ---------------------------------SIICGRNRLEN-------GSMKEWAKTFQSHRLLHTVKMVQNGIRPE 202 (386)
T ss_dssp ---------------------------------EEECCSSCCTG-------GGHHHHHHHHHHCTTCCEEECCSSCCCHH
T ss_pred ---------------------------------EEECCCCCCCc-------HHHHHHHHHHHhCCCcCEEECcCCCCCHh
Confidence 44444321110 0000111233344567777776665541
Q ss_pred -----CcccccCCCCCccceEEEecCCCc----ccCC-CCCCCCCCcEEEEeCCcceeee-----cccccCCCCCCCCCC
Q 044062 205 -----FPTWLGDSSFSNLVTLKFEDCGMC----TVLP-SVGQLPSLKHLTVRGMSRVKRL-----GSEFYGDDSPIPFPC 269 (567)
Q Consensus 205 -----~~~~~~~~~~~~L~~L~l~~~~~~----~~~~-~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~~~~ 269 (567)
.+..+. .+++|+.|++++|.+. ..++ .+..+++|++|++++|.. ... +..+.. ..+++
T Consensus 203 g~~~l~~~~l~--~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~----~~~~~ 275 (386)
T 2ca6_A 203 GIEHLLLEGLA--YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-SARGAAAVVDAFSK----LENIG 275 (386)
T ss_dssp HHHHHHHTTGG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC-CHHHHHHHHHHHHT----CSSCC
T ss_pred HHHHHHHHHhh--cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC-chhhHHHHHHHHhh----ccCCC
Confidence 121332 4667777777777753 2233 355677777777777742 222 111100 11677
Q ss_pred cceeeecccccccccccCCCCCcc-cCCCCccEEEEcCCCCcc
Q 044062 270 LETLRFEVMQEWEDWIPHGSSEGV-ERFPKLRELDILRCSKLQ 311 (567)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~ 311 (567)
|++|+++++.. .......++..+ ..+++|++|++++| .++
T Consensus 276 L~~L~L~~n~i-~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~ 316 (386)
T 2ca6_A 276 LQTLRLQYNEI-ELDAVRTLKTVIDEKMPDLLFLELNGN-RFS 316 (386)
T ss_dssp CCEEECCSSCC-BHHHHHHHHHHHHHHCTTCCEEECTTS-BSC
T ss_pred eEEEECcCCcC-CHHHHHHHHHHHHhcCCCceEEEccCC-cCC
Confidence 88888877642 221000112122 34788888888884 555
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=2.9e-15 Score=148.19 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=72.8
Q ss_pred hhhhhhhhhhccccceEEEecCCCCCcccc-ccccccccceeeccCCCcc-cccH-HHHccccCceeeccCccchhhccc
Q 044062 10 LALSILPKLFKLQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIK-TLPE-SVNKLYNLHTLLLEDCDRLEKLCA 86 (567)
Q Consensus 10 ~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~l~-~lp~-~~~~l~~L~~L~L~~~~~~~~l~~ 86 (567)
.++.+|+.++ +++++|+|++|+++.+|+ +|.++++|++|+|++|.+. .+|. .|.++++++++...+++.+..++.
T Consensus 20 ~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 3445777764 588899999999888874 6788999999999988875 4543 477888877655544447777754
Q ss_pred -ccccccccceeeccCccccccccc
Q 044062 87 -DMGNLTKLHHLNNSNTYSLEEMPV 110 (567)
Q Consensus 87 -~~~~l~~L~~L~l~~~~~~~~lp~ 110 (567)
.|+.+++|++|++++| .+..+|.
T Consensus 98 ~~f~~l~~L~~L~l~~n-~l~~~~~ 121 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNT-GIKHLPD 121 (350)
T ss_dssp TSBCCCTTCCEEEEEEE-CCSSCCC
T ss_pred hhhhhcccccccccccc-ccccCCc
Confidence 4788899999999888 6666654
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=4.4e-15 Score=141.40 Aligned_cols=105 Identities=30% Similarity=0.521 Sum_probs=87.2
Q ss_pred hhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHH-HHccccCceeeccCccchhhcccc-ccccc
Q 044062 15 LPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDCDRLEKLCAD-MGNLT 92 (567)
Q Consensus 15 ~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~ 92 (567)
.+.+..+++|++|++++|.++.+ +.+..+++|++|++++|.++.+|.. +..+++|++|++++| .++.++.. ++.++
T Consensus 56 ~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 56 VQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLT 133 (272)
T ss_dssp CTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCT
T ss_pred ccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCC
Confidence 44688999999999999999887 5789999999999999999988554 799999999999999 67777665 79999
Q ss_pred ccceeeccCcccccccccc-ccccccccccC
Q 044062 93 KLHHLNNSNTYSLEEMPVG-IGKLTCLQTLS 122 (567)
Q Consensus 93 ~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~ 122 (567)
+|++|++++| .+..+|.. +.++++|+.|+
T Consensus 134 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 134 NLTYLNLAHN-QLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCC-ccCccCHHHhccCccCCEEE
Confidence 9999999999 67766654 44555554443
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=4e-15 Score=142.98 Aligned_cols=170 Identities=18% Similarity=0.264 Sum_probs=110.7
Q ss_pred hhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhccccccccccccee
Q 044062 18 LFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHL 97 (567)
Q Consensus 18 ~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 97 (567)
+..+++|+.|++++|.++.+ +.+..+++|+.|++++|.++.++. +..+++|++|++++| .++.++. ++.+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence 45677788888888877776 347777888888888888877765 777888888888877 5666543 7778888888
Q ss_pred eccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccch
Q 044062 98 NNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAE 177 (567)
Q Consensus 98 ~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 177 (567)
++++| .+..++ .+.++++|+.|++..+.. ..
T Consensus 118 ~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l---------------------------------------~~-------- 148 (291)
T 1h6t_A 118 SLEHN-GISDIN-GLVHLPQLESLYLGNNKI---------------------------------------TD-------- 148 (291)
T ss_dssp ECTTS-CCCCCG-GGGGCTTCCEEECCSSCC---------------------------------------CC--------
T ss_pred ECCCC-cCCCCh-hhcCCCCCCEEEccCCcC---------------------------------------Cc--------
Confidence 88877 565553 355555555554332211 00
Q ss_pred hhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCc
Q 044062 178 TEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMS 249 (567)
Q Consensus 178 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 249 (567)
+..+..+++|+.|++.++....++. +. .+++|+.|++++|.+. .++.+..+++|+.|++++|.
T Consensus 149 -----~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 149 -----ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -----CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEEEE
T ss_pred -----chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCC-CChhhccCCCCCEEECcCCc
Confidence 1123344667777777666666554 32 5677777777777643 34456667777777777664
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=6.8e-17 Score=159.29 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=28.0
Q ss_pred cCCCCccEEEEcCCCCcccC---CCCCCCcccEEEEecchhhhhhcCCC-CCcceEEecCCCCcc
Q 044062 294 ERFPKLRELDILRCSKLQGT---FPEHLPALQMLVIQECKELLVSITSL-PALCKLEIDGCKKVV 354 (567)
Q Consensus 294 ~~~~~L~~L~l~~c~~l~~~---~~~~l~~L~~L~i~~~~~l~~~~~~~-~~L~~L~l~~~~~~~ 354 (567)
..+++|++|++++|..+... ....+++|+.|++++| .....+..+ .+++.|++++|....
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCC
T ss_pred hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCcc
Confidence 34455555555555433322 1123555666666655 111112222 236666677766543
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=1.1e-14 Score=153.56 Aligned_cols=170 Identities=19% Similarity=0.292 Sum_probs=105.0
Q ss_pred hhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhccccccccccccee
Q 044062 18 LFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHL 97 (567)
Q Consensus 18 ~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 97 (567)
+..+.+|+.|++++|.+..++ .+..+++|+.|+|++|.+..++. +..+++|++|+|++| .+..+| .++.+++|+.|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 455666666677766666653 46666677777777766666654 666677777777766 455544 46666677777
Q ss_pred eccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccch
Q 044062 98 NNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAE 177 (567)
Q Consensus 98 ~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 177 (567)
++++| .+..++ .+.++++|+.|+ ++.|....
T Consensus 115 ~Ls~N-~l~~l~-~l~~l~~L~~L~---------------------------------------Ls~N~l~~-------- 145 (605)
T 1m9s_A 115 SLEHN-GISDIN-GLVHLPQLESLY---------------------------------------LGNNKITD-------- 145 (605)
T ss_dssp ECTTS-CCCCCG-GGGGCTTCSEEE---------------------------------------CCSSCCCC--------
T ss_pred EecCC-CCCCCc-cccCCCccCEEE---------------------------------------CCCCccCC--------
Confidence 77666 455442 344555555554 43321111
Q ss_pred hhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCc
Q 044062 178 TEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMS 249 (567)
Q Consensus 178 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 249 (567)
+..+..+++|+.|++.++....++. +. .+++|+.|++++|.+.. ++.+..+++|+.|++++|.
T Consensus 146 -----l~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 146 -----ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -----CGGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred -----chhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence 1234455677777777777666654 33 57778888888776443 4566777788888887774
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=1.5e-15 Score=151.00 Aligned_cols=257 Identities=10% Similarity=0.043 Sum_probs=150.5
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccc-----ccccccc-ccceeeccCCCcccc-cHHHHcc-----c
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELP-----DSVGDLR-YLRHLNLSGTEIKTL-PESVNKL-----Y 68 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-----~~~~~l~-~L~~L~L~~~~l~~l-p~~~~~l-----~ 68 (567)
+++|+++| .+|..+...++|++|++++|.++..+ ..+..++ +|+.|+|++|.++.. +..+..+ +
T Consensus 5 ls~n~~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 5 LTLHPGSN----PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp CCCCTTCC----HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccchH----HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 57888888 66666677777999999999998765 5677888 899999999999865 5667765 9
Q ss_pred cCceeeccCccchhhccc-c----cccc-cccceeeccCcccccccccc-cc----c-cccccccCceEeccCCCCCccc
Q 044062 69 NLHTLLLEDCDRLEKLCA-D----MGNL-TKLHHLNNSNTYSLEEMPVG-IG----K-LTCLQTLSNFVVGKDSGLRLPE 136 (567)
Q Consensus 69 ~L~~L~L~~~~~~~~l~~-~----~~~l-~~L~~L~l~~~~~~~~lp~~-~~----~-l~~L~~L~~~~~~~~~~~~~~~ 136 (567)
+|++|+|++| .++..+. . +..+ ++|++|++++| .+...+.. +. . .++|++|++..+...+.
T Consensus 81 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----- 153 (362)
T 3goz_A 81 NVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK----- 153 (362)
T ss_dssp TCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-----
T ss_pred CccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-----
Confidence 9999999999 5654433 2 4444 89999999999 66655432 22 2 13555555433321100
Q ss_pred cccccccccceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCCCCC-CCcEEEEeecCCCCCcc-cccC--C
Q 044062 137 LKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHK-NLEQFGICGYGGTKFPT-WLGD--S 212 (567)
Q Consensus 137 l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~~~~~~~~~-~~~~--~ 212 (567)
........+...+ +|++|++.++....... .+.. .
T Consensus 154 -----------------------------------------~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 192 (362)
T 3goz_A 154 -----------------------------------------SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192 (362)
T ss_dssp -----------------------------------------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHH
Confidence 0001111222222 67777776665543321 1110 0
Q ss_pred CC-CccceEEEecCCCccc----CC-CCCC-CCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccc--cccc
Q 044062 213 SF-SNLVTLKFEDCGMCTV----LP-SVGQ-LPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQ--EWED 283 (567)
Q Consensus 213 ~~-~~L~~L~l~~~~~~~~----~~-~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~ 283 (567)
.+ ++|+.|++++|.+... ++ .+.. .++|++|++++|. +.+.+...... ....+++|++|+++++. .+..
T Consensus 193 ~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~-~~~~l~~L~~L~L~~n~l~~i~~ 270 (362)
T 3goz_A 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKL-LKDSLKHLQTVYLDYDIVKNMSK 270 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHH-TTTTTTTCSEEEEEHHHHTTCCH
T ss_pred hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHH-HHhcCCCccEEEeccCCccccCH
Confidence 23 4677777777764431 11 2222 3477777777764 33332211000 02236778888887764 1111
Q ss_pred cccCCCCCcccCCCCccEEEEcCCCCccc
Q 044062 284 WIPHGSSEGVERFPKLRELDILRCSKLQG 312 (567)
Q Consensus 284 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 312 (567)
.....+......+++|+.|+++++ .+.+
T Consensus 271 ~~~~~l~~~~~~l~~L~~LdL~~N-~l~~ 298 (362)
T 3goz_A 271 EQCKALGAAFPNIQKIILVDKNGK-EIHP 298 (362)
T ss_dssp HHHHHHHTTSTTCCEEEEECTTSC-BCCG
T ss_pred HHHHHHHHHhccCCceEEEecCCC-cCCC
Confidence 111111222256778888888884 5553
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=2.4e-14 Score=134.59 Aligned_cols=172 Identities=22% Similarity=0.279 Sum_probs=113.3
Q ss_pred ccceEEEecCCCCCccccccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhcccc-cccccccceeec
Q 044062 22 QRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKLHHLNN 99 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~l 99 (567)
.+.++++++++.++.+|..+. ++++.|++++|.+..++ ..+..+++|++|++++| .++.++.. ++.+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 467788888888888887665 57888999988888774 45888888999999888 56666544 788888899998
Q ss_pred cCcccccccccc-ccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchh
Q 044062 100 SNTYSLEEMPVG-IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAET 178 (567)
Q Consensus 100 ~~~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 178 (567)
++| .+..+|.. +.++++|+.|++..+.. +. .
T Consensus 91 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-----------------------------~~------------~------ 122 (251)
T 3m19_A 91 ANN-QLASLPLGVFDHLTQLDKLYLGGNQL-----------------------------KS------------L------ 122 (251)
T ss_dssp TTS-CCCCCCTTTTTTCTTCCEEECCSSCC-----------------------------CC------------C------
T ss_pred CCC-cccccChhHhcccCCCCEEEcCCCcC-----------------------------CC------------c------
Confidence 888 66666643 56666666665433211 00 0
Q ss_pred hhhhhccCCCCCCCcEEEEeecCCCCCccc-ccCCCCCccceEEEecCCCcccCC-CCCCCCCCcEEEEeCCc
Q 044062 179 EMGVLDMLKPHKNLEQFGICGYGGTKFPTW-LGDSSFSNLVTLKFEDCGMCTVLP-SVGQLPSLKHLTVRGMS 249 (567)
Q Consensus 179 ~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 249 (567)
....+..+++|+.|++.++....++.. +. .+++|+.|++++|.+....+ .+..+++|++|++++|.
T Consensus 123 ---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 123 ---PSGVFDRLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ---ChhHhccCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 001133445666666666666655542 22 46667777777776554443 35566677777777664
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=1.4e-14 Score=136.21 Aligned_cols=168 Identities=21% Similarity=0.225 Sum_probs=127.7
Q ss_pred cchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhcc
Q 044062 8 GYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKLC 85 (567)
Q Consensus 8 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l~ 85 (567)
++.+..+|..++ ++++.|++++|+++.++ ..|..+++|++|++++|.++.++ ..+..+++|++|++++| .++.+|
T Consensus 23 ~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 99 (251)
T 3m19_A 23 GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLP 99 (251)
T ss_dssp TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCC
T ss_pred CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccC
Confidence 333445787766 68999999999999875 56899999999999999999874 45899999999999999 677777
Q ss_pred cc-cccccccceeeccCcccccccccc-ccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEE
Q 044062 86 AD-MGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLR 163 (567)
Q Consensus 86 ~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~ 163 (567)
.. ++.+++|++|++++| .+..+|.. +.++++|+.|++..+.... +
T Consensus 100 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------------~--- 146 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS-----------------------------I--- 146 (251)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------------C---
T ss_pred hhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc-----------------------------c---
Confidence 54 789999999999999 88888765 5778888777654332100 0
Q ss_pred eeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCccc
Q 044062 164 WTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTV 230 (567)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 230 (567)
....+..+++|+.|++.++....++..... .+++|+.|++++|.+...
T Consensus 147 ------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 ------------------PAGAFDKLTNLQTLSLSTNQLQSVPHGAFD-RLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSCCBCTT
T ss_pred ------------------CHHHcCcCcCCCEEECCCCcCCccCHHHHh-CCCCCCEEEeeCCceeCC
Confidence 011245567888888888887777653221 678899999998886443
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=141.51 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=107.9
Q ss_pred cccceEEEecCCCCCc-ccccc--ccccccceeeccCCCcccc-c----HHHHccccCceeeccCccchhhcc-cccccc
Q 044062 21 LQRLRVFSLRGYRISE-LPDSV--GDLRYLRHLNLSGTEIKTL-P----ESVNKLYNLHTLLLEDCDRLEKLC-ADMGNL 91 (567)
Q Consensus 21 l~~L~~L~L~~~~~~~-l~~~~--~~l~~L~~L~L~~~~l~~l-p----~~~~~l~~L~~L~L~~~~~~~~l~-~~~~~l 91 (567)
+++|++|++++|.++. .|..+ ..+++|+.|++++|.++.. + ..+..+++|++|++++| .+..++ ..++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccC
Confidence 4557777777777663 34555 6777777777777777642 2 23446777777777777 444444 346777
Q ss_pred cccceeeccCcccccc---cccc--ccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeee
Q 044062 92 TKLHHLNNSNTYSLEE---MPVG--IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTC 166 (567)
Q Consensus 92 ~~L~~L~l~~~~~~~~---lp~~--~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~ 166 (567)
++|++|++++| .+.. ++.. +.++++|+.|++..+... .+..
T Consensus 169 ~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~l~~------------------------------ 214 (310)
T 4glp_A 169 PALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGME---TPTG------------------------------ 214 (310)
T ss_dssp TTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---CHHH------------------------------
T ss_pred CCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCC---chHH------------------------------
Confidence 77777777777 3322 3222 355666666655443211 0000
Q ss_pred cCCCCCCccchhhhhhhc-cCCCCCCCcEEEEeecCCCCC-cccccCC-CCCccceEEEecCCCcccCC-CCCCCCCCcE
Q 044062 167 STDGSSSREAETEMGVLD-MLKPHKNLEQFGICGYGGTKF-PTWLGDS-SFSNLVTLKFEDCGMCTVLP-SVGQLPSLKH 242 (567)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~ 242 (567)
... .+..+++|++|+++++..... |..+... .+++|+.|++++|.+. .+| .+ .++|++
T Consensus 215 ---------------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~L~~ 276 (310)
T 4glp_A 215 ---------------VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--PAKLRV 276 (310)
T ss_dssp ---------------HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC--CSCCSC
T ss_pred ---------------HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh--cCCCCE
Confidence 000 012235566666666655544 3333210 1256777777766655 333 22 256777
Q ss_pred EEEeCCcceeeecccccCCCCCCCCCCcceeeecccc
Q 044062 243 LTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQ 279 (567)
Q Consensus 243 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 279 (567)
|++++|. ++.++. ...+++|+.|++++++
T Consensus 277 L~Ls~N~-l~~~~~-------~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 277 LDLSSNR-LNRAPQ-------PDELPEVDNLTLDGNP 305 (310)
T ss_dssp EECCSCC-CCSCCC-------TTSCCCCSCEECSSTT
T ss_pred EECCCCc-CCCCch-------hhhCCCccEEECcCCC
Confidence 7777663 333222 1226777777776653
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=9.6e-16 Score=154.05 Aligned_cols=124 Identities=16% Similarity=0.167 Sum_probs=92.2
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCc----ccccc-------ccccccceeeccCCCccc-----ccHHH
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISE----LPDSV-------GDLRYLRHLNLSGTEIKT-----LPESV 64 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~----l~~~~-------~~l~~L~~L~L~~~~l~~-----lp~~~ 64 (567)
|++|.+++-....++..+.++++|++|++++|.+.. +|..+ ..+++|++|+|++|.++. +|..+
T Consensus 39 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 118 (386)
T 2ca6_A 39 LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118 (386)
T ss_dssp CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHH
Confidence 577888875555566668899999999999986553 33333 688999999999999986 68889
Q ss_pred HccccCceeeccCccchhh-----cccccccc---------cccceeeccCccccc--ccc---ccccccccccccCceE
Q 044062 65 NKLYNLHTLLLEDCDRLEK-----LCADMGNL---------TKLHHLNNSNTYSLE--EMP---VGIGKLTCLQTLSNFV 125 (567)
Q Consensus 65 ~~l~~L~~L~L~~~~~~~~-----l~~~~~~l---------~~L~~L~l~~~~~~~--~lp---~~~~~l~~L~~L~~~~ 125 (567)
..+++|++|+|++| .++. ++..+..+ ++|++|++++| .+. .+| ..+.++++|+.|++..
T Consensus 119 ~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 119 SKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcC
Confidence 99999999999999 4432 33334455 89999999999 554 344 3455666777776544
Q ss_pred e
Q 044062 126 V 126 (567)
Q Consensus 126 ~ 126 (567)
+
T Consensus 197 n 197 (386)
T 2ca6_A 197 N 197 (386)
T ss_dssp S
T ss_pred C
Confidence 3
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=2e-14 Score=135.82 Aligned_cols=167 Identities=23% Similarity=0.283 Sum_probs=119.2
Q ss_pred ccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeec
Q 044062 20 KLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNN 99 (567)
Q Consensus 20 ~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l 99 (567)
.+.++..++++++.++.++ .+..+++|++|++++|.++.+| .+..+++|++|++++| .++.++. ++++++|+.|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 5567777888888888775 6788889999999999888887 6888899999999988 6777776 888899999999
Q ss_pred cCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhh
Q 044062 100 SNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETE 179 (567)
Q Consensus 100 ~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 179 (567)
++| .+..+|... . ++|+.| ++++|....
T Consensus 93 ~~N-~l~~l~~~~-~-~~L~~L---------------------------------------~L~~N~l~~---------- 120 (263)
T 1xeu_A 93 NRN-RLKNLNGIP-S-ACLSRL---------------------------------------FLDNNELRD---------- 120 (263)
T ss_dssp CSS-CCSCCTTCC-C-SSCCEE---------------------------------------ECCSSCCSB----------
T ss_pred CCC-ccCCcCccc-c-CcccEE---------------------------------------EccCCccCC----------
Confidence 988 666665422 1 444444 343321110
Q ss_pred hhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCc
Q 044062 180 MGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMS 249 (567)
Q Consensus 180 ~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 249 (567)
++.+..+++|+.|++.++....++ .+. .+++|+.|++++|.+... ..+..+++|+.|++++|.
T Consensus 121 ---~~~l~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 121 ---TDSLIHLKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ---SGGGTTCTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred ---ChhhcCcccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 123555677777777777776665 233 577888888888875554 667778888888888774
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=8.4e-14 Score=133.74 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=94.7
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDR 80 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 80 (567)
+++|.+.+ + +.+..+++|++|++++|+++.+++ +..+++|+.|++++|.++.+|. +..+++|++|++++| .
T Consensus 53 l~~~~i~~-----~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n-~ 123 (291)
T 1h6t_A 53 ANNSDIKS-----V-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN-G 123 (291)
T ss_dssp CTTSCCCC-----C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS-C
T ss_pred ccCCCccc-----C-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC-c
Confidence 34566655 4 458899999999999999998866 9999999999999999998765 999999999999999 6
Q ss_pred hhhcccccccccccceeeccCccccccccccccccccccccCceEe
Q 044062 81 LEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVV 126 (567)
Q Consensus 81 ~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~ 126 (567)
++.+ +.++.+++|+.|++++| .+..+ ..+.++++|+.|++..+
T Consensus 124 i~~~-~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 124 ISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CCCC-GGGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS
T ss_pred CCCC-hhhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCC
Confidence 7777 46899999999999999 77776 45777777777765433
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=2.3e-14 Score=139.30 Aligned_cols=192 Identities=17% Similarity=0.121 Sum_probs=139.1
Q ss_pred CCccccccchhhhhhhhh--hccccceEEEecCCCCCcc-c----cccccccccceeeccCCCccccc-HHHHccccCce
Q 044062 1 MLSNRLHGYLALSILPKL--FKLQRLRVFSLRGYRISEL-P----DSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHT 72 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~l-~----~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~ 72 (567)
|++|.+.+ ..|..+ ..+++|++|++++|.++.. + ..+..+++|++|++++|.+..++ ..++.+++|++
T Consensus 98 l~~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 173 (310)
T 4glp_A 98 LEDLKITG----TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTS 173 (310)
T ss_dssp EESCCCBS----CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCE
T ss_pred eeCCEecc----chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCE
Confidence 35777877 677777 8999999999999998853 2 23457999999999999999774 67899999999
Q ss_pred eeccCccchhh--cccc--cccccccceeeccCcccccccccc----ccccccccccCceEeccCCCCCccccccccccc
Q 044062 73 LLLEDCDRLEK--LCAD--MGNLTKLHHLNNSNTYSLEEMPVG----IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLR 144 (567)
Q Consensus 73 L~L~~~~~~~~--l~~~--~~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~ 144 (567)
|++++|...+. ++.. ++.+++|++|++++| .+..++.. +.++++|++|++..+.....
T Consensus 174 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~------------- 239 (310)
T 4glp_A 174 LDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRAT------------- 239 (310)
T ss_dssp EECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-------------
T ss_pred EECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-------------
Confidence 99999943322 3322 478999999999999 77766543 35566777766543321110
Q ss_pred cceeecccccccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEec
Q 044062 145 GTLEISKLENENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFED 224 (567)
Q Consensus 145 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 224 (567)
.+. .+..+..+++|++|++.++....+|..+ +++|+.|++++
T Consensus 240 ---------------------------~p~-------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~ 281 (310)
T 4glp_A 240 ---------------------------VNP-------SAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSS 281 (310)
T ss_dssp ---------------------------CCS-------CCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCS
T ss_pred ---------------------------chh-------hHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCC
Confidence 000 0111223368888999888888777654 36899999999
Q ss_pred CCCcccCCCCCCCCCCcEEEEeCCc
Q 044062 225 CGMCTVLPSVGQLPSLKHLTVRGMS 249 (567)
Q Consensus 225 ~~~~~~~~~~~~l~~L~~L~l~~~~ 249 (567)
|.+.+. |.+..+++|++|++++|.
T Consensus 282 N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 282 NRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred CcCCCC-chhhhCCCccEEECcCCC
Confidence 986543 556778999999999885
No 100
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.5e-13 Score=120.49 Aligned_cols=120 Identities=22% Similarity=0.215 Sum_probs=89.2
Q ss_pred CCccccc-cchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCccc-ccHHHHccccCceeeccCc
Q 044062 1 MLSNRLH-GYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKT-LPESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~L~~~ 78 (567)
+++|.++ + .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|++++|
T Consensus 31 l~~n~l~~~----~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 31 LDNCKSNDG----KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp CCSCBCBTT----BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred CCCCCCChh----hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence 3556665 3 5666677888888888888887776 677778888888888888876 6666777888888888887
Q ss_pred cchhhcc--cccccccccceeeccCccccccccc----cccccccccccCceEec
Q 044062 79 DRLEKLC--ADMGNLTKLHHLNNSNTYSLEEMPV----GIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 79 ~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~~~~~~ 127 (567)
.++.+| ..++.+++|+.|++++| .+...|. .+.++++|+.|++..+.
T Consensus 106 -~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 106 -KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp -SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred -ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 666665 45778888888888888 6777765 57778888888766553
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=1.2e-13 Score=124.46 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=43.0
Q ss_pred hccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchh-hccccccccccccee
Q 044062 19 FKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLE-KLCADMGNLTKLHHL 97 (567)
Q Consensus 19 ~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~-~l~~~~~~l~~L~~L 97 (567)
..+++|++|++++|.++.+| .+..+++|+.|++++|.++.++ .+..+++|++|++++| .++ ..+..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 44455555555555555554 4555555555555555444442 4555555555555555 232 234445555555555
Q ss_pred eccCc
Q 044062 98 NNSNT 102 (567)
Q Consensus 98 ~l~~~ 102 (567)
++++|
T Consensus 118 ~Ls~n 122 (197)
T 4ezg_A 118 DISHS 122 (197)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 55555
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=6.3e-14 Score=147.71 Aligned_cols=189 Identities=19% Similarity=0.270 Sum_probs=141.3
Q ss_pred cccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeecc
Q 044062 21 LQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNS 100 (567)
Q Consensus 21 l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~ 100 (567)
+..+..+.+..+.+..+ ..+..+++|+.|++++|.+..+| .+..+++|++|+|++| .+..++. ++.+++|+.|+++
T Consensus 20 l~~l~~l~l~~~~i~~~-~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSCTTSE-ECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCCcccc-cchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECc
Confidence 34556667777777765 34578899999999999999886 5899999999999998 6777766 8999999999999
Q ss_pred CccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhh
Q 044062 101 NTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEM 180 (567)
Q Consensus 101 ~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 180 (567)
+| .+..+| .+..+++|+.|++..+. ...
T Consensus 96 ~N-~l~~l~-~l~~l~~L~~L~Ls~N~---------------------------------------l~~----------- 123 (605)
T 1m9s_A 96 EN-KIKDLS-SLKDLKKLKSLSLEHNG---------------------------------------ISD----------- 123 (605)
T ss_dssp SS-CCCCCT-TSTTCTTCCEEECTTSC---------------------------------------CCC-----------
T ss_pred CC-CCCCCh-hhccCCCCCEEEecCCC---------------------------------------CCC-----------
Confidence 99 777665 46666666666543221 100
Q ss_pred hhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccCCCCCCCCCCcEEEEeCCcceeeecccccC
Q 044062 181 GVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVLPSVGQLPSLKHLTVRGMSRVKRLGSEFYG 260 (567)
Q Consensus 181 ~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 260 (567)
++.+..+++|+.|++.++....++ .+. .+++|+.|++++|.+....+ +..+++|++|++++|. +..++.
T Consensus 124 --l~~l~~l~~L~~L~Ls~N~l~~l~-~l~--~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~---- 192 (605)
T 1m9s_A 124 --INGLVHLPQLESLYLGNNKITDIT-VLS--RLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA---- 192 (605)
T ss_dssp --CGGGGGCTTCSEEECCSSCCCCCG-GGG--SCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG----
T ss_pred --CccccCCCccCEEECCCCccCCch-hhc--ccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChH----
Confidence 122445688999999999888773 333 68999999999998666555 8889999999999984 444431
Q ss_pred CCCCCCCCCcceeeecccc
Q 044062 261 DDSPIPFPCLETLRFEVMQ 279 (567)
Q Consensus 261 ~~~~~~~~~L~~L~l~~~~ 279 (567)
+..+++|+.|++++++
T Consensus 193 ---l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 193 ---LAGLKNLDVLELFSQE 208 (605)
T ss_dssp ---GTTCTTCSEEECCSEE
T ss_pred ---HccCCCCCEEEccCCc
Confidence 2338899999998864
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=1.1e-13 Score=118.77 Aligned_cols=114 Identities=20% Similarity=0.236 Sum_probs=74.3
Q ss_pred Cccccc-cchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCccc-ccHHHHccccCceeeccCcc
Q 044062 2 LSNRLH-GYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKT-LPESVNKLYNLHTLLLEDCD 79 (567)
Q Consensus 2 ~~n~l~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~L~~~~ 79 (567)
++|+++ + .+|..+..+++|++|++++|.++.+ +.+..+++|++|++++|.++. +|..+..+++|++|++++|
T Consensus 25 ~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N- 98 (149)
T 2je0_A 25 DNSRSNEG----KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN- 98 (149)
T ss_dssp TTCBCBTT----BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-
T ss_pred cCCcCChh----HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-
Confidence 455555 3 4555666777777777777776665 566667777777777777765 5666666777777777776
Q ss_pred chhhcc--cccccccccceeeccCccccccccc----cccccccccccC
Q 044062 80 RLEKLC--ADMGNLTKLHHLNNSNTYSLEEMPV----GIGKLTCLQTLS 122 (567)
Q Consensus 80 ~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~ 122 (567)
.++.+| ..++.+++|++|++++| .+...|. .+..+++|+.|+
T Consensus 99 ~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 99 KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEET
T ss_pred cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCccccc
Confidence 455543 45667777777777777 5665554 366666666665
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=1.4e-13 Score=130.04 Aligned_cols=105 Identities=23% Similarity=0.241 Sum_probs=89.9
Q ss_pred hhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccc
Q 044062 14 ILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTK 93 (567)
Q Consensus 14 ~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~ 93 (567)
++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|.++.+|. +..+++|++|++++| .++.+|.. .. ++
T Consensus 34 ~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-~~-~~ 107 (263)
T 1xeu_A 34 LV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-PS-AC 107 (263)
T ss_dssp EE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-CC-SS
T ss_pred cc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcc-cc-Cc
Confidence 44 6889999999999999999886 78999999999999999999977 999999999999999 77777653 33 99
Q ss_pred cceeeccCccccccccccccccccccccCceEe
Q 044062 94 LHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVV 126 (567)
Q Consensus 94 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~ 126 (567)
|+.|++++| .+..++ .+.++++|+.|++..+
T Consensus 108 L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 108 LSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNN 138 (263)
T ss_dssp CCEEECCSS-CCSBSG-GGTTCTTCCEEECTTS
T ss_pred ccEEEccCC-ccCCCh-hhcCcccccEEECCCC
Confidence 999999999 777775 4777888887765444
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=3.2e-13 Score=140.69 Aligned_cols=91 Identities=23% Similarity=0.297 Sum_probs=73.7
Q ss_pred cceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeeccCc
Q 044062 23 RLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNT 102 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~ 102 (567)
+++.|++++|.++.+|..+. ++|+.|+|++|.++.+| ..+++|++|++++| .++.+|. +++ +|+.|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 89999999999888877653 78999999999999888 56789999999998 6777887 665 8999999998
Q ss_pred cccccccccccccccccccCceEe
Q 044062 103 YSLEEMPVGIGKLTCLQTLSNFVV 126 (567)
Q Consensus 103 ~~~~~lp~~~~~l~~L~~L~~~~~ 126 (567)
.+..+|. .+++|+.|++..+
T Consensus 131 -~l~~lp~---~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 131 -QLTMLPE---LPALLEYINADNN 150 (571)
T ss_dssp -CCSCCCC---CCTTCCEEECCSS
T ss_pred -cCCCCCC---cCccccEEeCCCC
Confidence 7777776 5677777765444
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=2.7e-14 Score=141.97 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=62.1
Q ss_pred EEEecCCCCCccccc-cccccccceeeccCCCccccc-----HHHHccc-cCceeeccCccchhhc-ccccccc-----c
Q 044062 26 VFSLRGYRISELPDS-VGDLRYLRHLNLSGTEIKTLP-----ESVNKLY-NLHTLLLEDCDRLEKL-CADMGNL-----T 92 (567)
Q Consensus 26 ~L~L~~~~~~~l~~~-~~~l~~L~~L~L~~~~l~~lp-----~~~~~l~-~L~~L~L~~~~~~~~l-~~~~~~l-----~ 92 (567)
.+++++|.++...+. +...++|+.|++++|.++..+ ..+..++ +|++|+|++| .++.. +..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCC
Confidence 467888988865444 466666999999999999774 5678888 8999999999 56554 4446554 8
Q ss_pred ccceeeccCccccccc
Q 044062 93 KLHHLNNSNTYSLEEM 108 (567)
Q Consensus 93 ~L~~L~l~~~~~~~~l 108 (567)
+|++|++++| .+...
T Consensus 81 ~L~~L~Ls~n-~l~~~ 95 (362)
T 3goz_A 81 NVTSLNLSGN-FLSYK 95 (362)
T ss_dssp TCCEEECCSS-CGGGS
T ss_pred CccEEECcCC-cCChH
Confidence 9999999999 56543
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=2.5e-13 Score=125.56 Aligned_cols=113 Identities=26% Similarity=0.323 Sum_probs=83.4
Q ss_pred hhhhhhhhhccccceEEEecCCCCCcc-ccccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhcccc-
Q 044062 11 ALSILPKLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKLCAD- 87 (567)
Q Consensus 11 ~~~~~~~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~~- 87 (567)
+..+|..++ ++|++|++++|.++.+ +..|..+++|++|+|++|.++.+|. .+..+++|++|+|++| .++.++..
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~ 107 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAV 107 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhH
Confidence 334666554 6788888888887766 4567778888888888888877754 3677888888888887 66666655
Q ss_pred cccccccceeeccCccccccccccccccccccccCceEec
Q 044062 88 MGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~ 127 (567)
++.+++|++|++++| .+..+|..+.++++|+.|++..+.
T Consensus 108 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 108 FDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp TTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC
T ss_pred hCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCc
Confidence 577888888888888 777787777788888888765553
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.1e-13 Score=126.02 Aligned_cols=99 Identities=30% Similarity=0.479 Sum_probs=58.9
Q ss_pred ccceEEEecCCCCCcccc-ccccccccceeeccCCCcccccHH-HHccccCceeeccCccchhhcccc-cccccccceee
Q 044062 22 QRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKLHHLN 98 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~ 98 (567)
++|++|++++|+++.+++ .+..+++|++|++++|.++.+|.. +..+++|++|++++| .++.+|.. ++++++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEE
Confidence 466666666666665543 356666666666666666665433 466666666666666 45555544 46666666666
Q ss_pred ccCcccccccccc-ccccccccccC
Q 044062 99 NSNTYSLEEMPVG-IGKLTCLQTLS 122 (567)
Q Consensus 99 l~~~~~~~~lp~~-~~~l~~L~~L~ 122 (567)
+++| .+..++.. +.++++|+.|+
T Consensus 107 L~~N-~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 107 LNTN-QLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCC-cCcccCHhHhccCCcCCEEE
Confidence 6666 55555443 44444444443
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=3.8e-13 Score=121.25 Aligned_cols=134 Identities=12% Similarity=0.201 Sum_probs=108.9
Q ss_pred hhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCccc-ccHHHHccccCceeeccCccchhhccccccc
Q 044062 12 LSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKT-LPESVNKLYNLHTLLLEDCDRLEKLCADMGN 90 (567)
Q Consensus 12 ~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~ 90 (567)
..+| .+..+++|++|++++|.++.+ +.+..+++|++|++++|.++. .|..++.+++|++|++++|......|..++.
T Consensus 57 ~~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 57 TDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp SCCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred cChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence 3456 789999999999999988776 578899999999999999985 5788999999999999999433346677999
Q ss_pred ccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEee
Q 044062 91 LTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWT 165 (567)
Q Consensus 91 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~ 165 (567)
+++|++|++++|..+..+| .+.++++|+.|++..+...+ +..+..+. +|+.|++++|
T Consensus 135 l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~---~~~l~~l~--------------~L~~L~l~~N 191 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD---YRGIEDFP--------------KLNQLYAFSQ 191 (197)
T ss_dssp CSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC---CTTGGGCS--------------SCCEEEECBC
T ss_pred CCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC---hHHhccCC--------------CCCEEEeeCc
Confidence 9999999999994388887 68999999999876664433 33455555 7888888764
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=3.9e-13 Score=140.08 Aligned_cols=173 Identities=18% Similarity=0.186 Sum_probs=120.8
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDR 80 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 80 (567)
|++|++++ +|..+. ++|++|++++|.++.+| ..+++|+.|++++|.++.+|. +.. +|++|++++| .
T Consensus 66 Ls~n~L~~-----lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~ 131 (571)
T 3cvr_A 66 LNRLNLSS-----LPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-Q 131 (571)
T ss_dssp CCSSCCSC-----CCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-C
T ss_pred eCCCCCCc-----cCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-c
Confidence 45677765 676654 78999999999999987 557999999999999999987 555 9999999999 6
Q ss_pred hhhcccccccccccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeecccccccccce
Q 044062 81 LEKLCADMGNLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLREL 160 (567)
Q Consensus 81 ~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l 160 (567)
++.+|. .+++|+.|++++| .+..+|. .+++|+.|++..+.... +
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~L~~---l-------------------------- 175 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQLTF---L-------------------------- 175 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSC---C--------------------------
T ss_pred CCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCCCCC---c--------------------------
Confidence 777887 7899999999999 7887776 45566666544332111 0
Q ss_pred EEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCcc-------ceEEEecCCCcccCCC
Q 044062 161 LLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNL-------VTLKFEDCGMCTVLPS 233 (567)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~ 233 (567)
+.+. ++|+.|++.+|....+|. +. . +| +.|++++|.+......
T Consensus 176 -----------------------p~l~--~~L~~L~Ls~N~L~~lp~-~~--~--~L~~~~~~L~~L~Ls~N~l~~lp~~ 225 (571)
T 3cvr_A 176 -----------------------PELP--ESLEALDVSTNLLESLPA-VP--V--RNHHSEETEIFFRCRENRITHIPEN 225 (571)
T ss_dssp -----------------------CCCC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGG
T ss_pred -----------------------chhh--CCCCEEECcCCCCCchhh-HH--H--hhhcccccceEEecCCCcceecCHH
Confidence 0011 466666666666666655 32 1 44 7777777765543224
Q ss_pred CCCCCCCcEEEEeCCcceee
Q 044062 234 VGQLPSLKHLTVRGMSRVKR 253 (567)
Q Consensus 234 ~~~l~~L~~L~l~~~~~~~~ 253 (567)
+..+++|+.|++++|.....
T Consensus 226 l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHH
T ss_pred HhcCCCCCEEEeeCCcCCCc
Confidence 55577777777777754333
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=3.5e-13 Score=123.65 Aligned_cols=111 Identities=22% Similarity=0.301 Sum_probs=81.9
Q ss_pred hhhhhhhhccccceEEEecCCCCCcccc-ccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhcccc-c
Q 044062 12 LSILPKLFKLQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCAD-M 88 (567)
Q Consensus 12 ~~~~~~~~~l~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~-~ 88 (567)
..+|..++ ++++.|++++|+++.+++ .|..+++|++|+|++|.++.+ |..|..+++|++|+|++| .++.+|.. |
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f 100 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLF 100 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTT
T ss_pred CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHc
Confidence 34666555 578888888888887753 678888888888888888876 667888888888888887 67777765 5
Q ss_pred ccccccceeeccCcccccccc-ccccccccccccCceEe
Q 044062 89 GNLTKLHHLNNSNTYSLEEMP-VGIGKLTCLQTLSNFVV 126 (567)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~~~~~ 126 (567)
+.+++|++|++++| .+..++ ..+.++++|+.|++..+
T Consensus 101 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 101 EGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC
Confidence 77888888888888 666664 34667777776654433
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=3.9e-13 Score=124.23 Aligned_cols=120 Identities=23% Similarity=0.348 Sum_probs=100.2
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccccHH-HHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~ 78 (567)
|++|.+++ ..|..|..+++|++|++++|+++.++ ..|..+++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 47 Ls~n~i~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 47 LHDNQITK----LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp CCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCccCc----cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 56788887 55667899999999999999998886 4568899999999999999988654 788999999999998
Q ss_pred cchhhcccccccccccceeeccCcccccccccc-ccccccccccCceEe
Q 044062 79 DRLEKLCADMGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVV 126 (567)
Q Consensus 79 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~ 126 (567)
.++.+|..++.+++|+.|++++| .+..+|.. +.++++|+.|++..+
T Consensus 123 -~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 123 -KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp -CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred -cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 78889888999999999999999 78888754 778888888865544
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=5.5e-13 Score=122.32 Aligned_cols=120 Identities=30% Similarity=0.439 Sum_probs=103.0
Q ss_pred CCccccccchhhhhhh-hhhccccceEEEecCCCCCcc-ccccccccccceeeccCCCcccccHH-HHccccCceeeccC
Q 044062 1 MLSNRLHGYLALSILP-KLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLED 77 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~ 77 (567)
|++|++++ +++ .|..+++|++|++++|+++.+ |.+|..+++|++|+|++|.++.+|.. |..+++|++|+|++
T Consensus 39 l~~n~i~~-----i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 39 LEQNTIKV-----IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CCSSCCCE-----ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCCC-----cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 46677776 555 799999999999999999977 67899999999999999999999765 78999999999999
Q ss_pred ccchhhcc-cccccccccceeeccCcccccccccc-ccccccccccCceEec
Q 044062 78 CDRLEKLC-ADMGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVG 127 (567)
Q Consensus 78 ~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~ 127 (567)
| .++.++ ..|+.+++|+.|++++| .+..++.+ +..+++|+.|++..+.
T Consensus 114 N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 114 N-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9 677664 45899999999999999 78888765 8889999998765543
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=5.8e-14 Score=147.07 Aligned_cols=175 Identities=13% Similarity=0.066 Sum_probs=119.6
Q ss_pred hhccccceEEEecCCCCCccccccccccccceeeccCCC-------------cc-cccHHHHccccCceee-ccCccchh
Q 044062 18 LFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTE-------------IK-TLPESVNKLYNLHTLL-LEDCDRLE 82 (567)
Q Consensus 18 ~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~-------------l~-~lp~~~~~l~~L~~L~-L~~~~~~~ 82 (567)
+..+++|+.|+|++|+++.+|+.+..|++|+.|++++|. .. ..|..++.+++|+.|+ ++.+ .+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 356788999999999988899899999999999987664 22 4467788899999998 5554 444
Q ss_pred hccc------ccccc--cccceeeccCccccccccccccccccccccCceEeccCCCCCccccccccccccceeeccccc
Q 044062 83 KLCA------DMGNL--TKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLEN 154 (567)
Q Consensus 83 ~l~~------~~~~l--~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~ 154 (567)
.++. .+..+ ..|+.|++++| .+..+|. ++++++|+.|++..+... ..
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~--~l--------------------- 478 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLR--AL--------------------- 478 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCC--CC---------------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCccccc--cc---------------------
Confidence 4432 12222 36889999999 7888876 888888888865544221 01
Q ss_pred ccccceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceEEEecCCCcccC-C-
Q 044062 155 ENLRELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTVL-P- 232 (567)
Q Consensus 155 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~- 232 (567)
...+..+++|+.|++.++..+.+| .+. .+++|+.|++++|.+.+.. |
T Consensus 479 ----------------------------p~~~~~l~~L~~L~Ls~N~l~~lp-~l~--~l~~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 479 ----------------------------PPALAALRCLEVLQASDNALENVD-GVA--NLPRLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp ----------------------------CGGGGGCTTCCEEECCSSCCCCCG-GGT--TCSSCCEEECCSSCCCSSSTTG
T ss_pred ----------------------------chhhhcCCCCCEEECCCCCCCCCc-ccC--CCCCCcEEECCCCCCCCCCCcH
Confidence 112334456667777766666666 333 5777777777777766553 3
Q ss_pred CCCCCCCCcEEEEeCCc
Q 044062 233 SVGQLPSLKHLTVRGMS 249 (567)
Q Consensus 233 ~~~~l~~L~~L~l~~~~ 249 (567)
.++.+++|+.|++++|.
T Consensus 528 ~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 528 PLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp GGGGCTTCCEEECTTSG
T ss_pred HHhcCCCCCEEEecCCc
Confidence 56677777777777774
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=9.8e-13 Score=120.65 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=61.4
Q ss_pred hhhhhhccccceEEEecCCCCCccc--cccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhcccc-cc
Q 044062 14 ILPKLFKLQRLRVFSLRGYRISELP--DSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKLCAD-MG 89 (567)
Q Consensus 14 ~~~~~~~l~~L~~L~L~~~~~~~l~--~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~~-~~ 89 (567)
+|..++ ..+++|++++|+++.++ ..|..+++|++|++++|.++.++. .|..+++|++|+|++| .++.++.. ++
T Consensus 26 iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 102 (220)
T 2v70_A 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFK 102 (220)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGT
T ss_pred CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhc
Confidence 454443 24456666666666552 235666666666666666665533 4666666666666666 44444443 56
Q ss_pred cccccceeeccCccccccc-cccccccccccccCceEe
Q 044062 90 NLTKLHHLNNSNTYSLEEM-PVGIGKLTCLQTLSNFVV 126 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~~~~~ 126 (567)
.+++|++|++++| .+..+ |..+.++++|+.|++..+
T Consensus 103 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 103 GLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp TCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS
T ss_pred CCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC
Confidence 6666666666666 45544 334666666666654433
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=119.50 Aligned_cols=120 Identities=17% Similarity=0.252 Sum_probs=91.3
Q ss_pred CCccccccchhhhhhh-hhhccccceEEEecCCCCCcccc-ccccccccceeeccCCCcccccH-HHHccccCceeeccC
Q 044062 1 MLSNRLHGYLALSILP-KLFKLQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLED 77 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~ 77 (567)
|++|++++ ..|. .|..+++|++|++++|+++.+++ +|..+++|+.|+|++|.++.++. .|..+++|++|+|++
T Consensus 39 L~~N~l~~----~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 39 LNNNEFTV----LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp CCSSCCCE----ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred cCCCcCCc----cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 45666665 3233 47888888899998888887754 68888888999998888887754 488888889998888
Q ss_pred ccchhhc-ccccccccccceeeccCccccccc-cccccccccccccCceEe
Q 044062 78 CDRLEKL-CADMGNLTKLHHLNNSNTYSLEEM-PVGIGKLTCLQTLSNFVV 126 (567)
Q Consensus 78 ~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~~~~~ 126 (567)
| .+..+ |..++.+++|+.|++++| .+..+ |..+.++++|+.|++..+
T Consensus 115 N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 115 N-RITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp S-CCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred C-cCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 8 56655 455888888889998888 67766 556888888888765544
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=9.8e-13 Score=130.54 Aligned_cols=172 Identities=19% Similarity=0.254 Sum_probs=101.9
Q ss_pred eEEEecCCCCCccccccccccccceeeccCCCcccccHH-HH-ccccCceeeccCccchhhccc-ccccccccceeeccC
Q 044062 25 RVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPES-VN-KLYNLHTLLLEDCDRLEKLCA-DMGNLTKLHHLNNSN 101 (567)
Q Consensus 25 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~-~~-~l~~L~~L~L~~~~~~~~l~~-~~~~l~~L~~L~l~~ 101 (567)
+++++++++++.+|..+. +.++.|+|++|.++.++.. +. .+++|++|+|++| .+..++. .|+.+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 567777777777765554 3467777777777766443 44 6777777777777 5666654 367777777777777
Q ss_pred cccccccccc-ccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeecCCCCCCccchhhh
Q 044062 102 TYSLEEMPVG-IGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCSTDGSSSREAETEM 180 (567)
Q Consensus 102 ~~~~~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 180 (567)
| .+..++.. +.++++|+.|++..+.. ..+
T Consensus 98 N-~l~~~~~~~~~~l~~L~~L~L~~N~i-----------------------------~~~-------------------- 127 (361)
T 2xot_A 98 N-HLHTLDEFLFSDLQALEVLLLYNNHI-----------------------------VVV-------------------- 127 (361)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCSSCC-----------------------------CEE--------------------
T ss_pred C-cCCcCCHHHhCCCcCCCEEECCCCcc-----------------------------cEE--------------------
Confidence 7 56666543 66666666665433311 000
Q ss_pred hhhccCCCCCCCcEEEEeecCCCCCcccccC--CCCCccceEEEecCCCcccCC-CCCCCCC--CcEEEEeCCcc
Q 044062 181 GVLDMLKPHKNLEQFGICGYGGTKFPTWLGD--SSFSNLVTLKFEDCGMCTVLP-SVGQLPS--LKHLTVRGMSR 250 (567)
Q Consensus 181 ~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~l~~--L~~L~l~~~~~ 250 (567)
....+..+++|+.|++.++....++..... ..+++|+.|++++|.+....+ .+..++. ++.|++.+|..
T Consensus 128 -~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 128 -DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred -CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 011234446666666666666666554321 146777777777776443221 2334444 36777777653
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=1.9e-12 Score=114.35 Aligned_cols=107 Identities=26% Similarity=0.373 Sum_probs=64.2
Q ss_pred hhhccccceEEEecCCCCCcccccccccc-ccceeeccCCCcccccHHHHccccCceeeccCccchhhccccc-cccccc
Q 044062 17 KLFKLQRLRVFSLRGYRISELPDSVGDLR-YLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADM-GNLTKL 94 (567)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~l~~~~~~l~-~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~-~~l~~L 94 (567)
.+..+.+|++|++++|+++.++. +..+. +|++|++++|.++.+ ..+..+++|++|++++| .++.+|..+ +.+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 34555666666666666665533 33333 666666666666665 45666666666666666 455555443 666666
Q ss_pred ceeeccCccccccccc--cccccccccccCceEec
Q 044062 95 HHLNNSNTYSLEEMPV--GIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 95 ~~L~l~~~~~~~~lp~--~~~~l~~L~~L~~~~~~ 127 (567)
+.|++++| .+..+|. .+.++++|+.|++..+.
T Consensus 91 ~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 91 TELILTNN-SLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp CEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred CEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence 66666666 5566654 46666666666554443
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=116.31 Aligned_cols=114 Identities=21% Similarity=0.287 Sum_probs=97.2
Q ss_pred hhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhccc-c
Q 044062 10 LALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKLCA-D 87 (567)
Q Consensus 10 ~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~-~ 87 (567)
.+..+|..++ ++|++|++++|.++.+|..|..+++|+.|++++|.++.++ ..|..+++|++|+|++| .++.++. .
T Consensus 21 ~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~ 97 (193)
T 2wfh_A 21 GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRT 97 (193)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTT
T ss_pred CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHH
Confidence 3335777665 5899999999999999989999999999999999999885 56999999999999999 6777765 4
Q ss_pred cccccccceeeccCcccccccccc-ccccccccccCceEec
Q 044062 88 MGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVG 127 (567)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~ 127 (567)
|+.+++|+.|++++| .+..+|.. +.++++|+.|++..+.
T Consensus 98 f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 899999999999999 88888875 8889999999765543
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=3.4e-12 Score=116.11 Aligned_cols=119 Identities=29% Similarity=0.410 Sum_probs=101.0
Q ss_pred CCccccccchhhhhhh-hhhccccceEEEecCCCCCcccc-ccccccccceeeccCCCcccccHH-HHccccCceeeccC
Q 044062 1 MLSNRLHGYLALSILP-KLFKLQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLED 77 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~ 77 (567)
+++|.+++ +++ .|..+++|++|++++|+++.++. .|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 35 l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 35 LETNSLKS-----LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCccCc-----CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 46777776 444 58999999999999999998865 468999999999999999988654 78999999999999
Q ss_pred ccchhhcccc-cccccccceeeccCcccccccccc-ccccccccccCceEe
Q 044062 78 CDRLEKLCAD-MGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVV 126 (567)
Q Consensus 78 ~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~ 126 (567)
| .++.++.. ++++++|+.|++++| .+..++.. +.++++|+.|++..+
T Consensus 110 N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 110 N-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred C-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 9 67777765 789999999999999 78888765 788888988876554
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=3.1e-12 Score=138.31 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=98.8
Q ss_pred hhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccc
Q 044062 10 LALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMG 89 (567)
Q Consensus 10 ~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~ 89 (567)
.+...+..+..+++|++|+|++|.+..+|..+..+++|++|+|++|.++.+|..|+.+++|++|+|++| .++.+|..++
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 290 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELG 290 (727)
T ss_dssp ----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGG
T ss_pred ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhc
Confidence 334445578999999999999999999988888999999999999999999999999999999999999 6779999999
Q ss_pred cccccceeeccCccccccccccccccccccccCceEec
Q 044062 90 NLTKLHHLNNSNTYSLEEMPVGIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~~~~~~ 127 (567)
+|++|++|++++| .+..+|..|+++++|+.|++..+.
T Consensus 291 ~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 291 SCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 9999999999999 889999999999999999876554
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=5.1e-12 Score=132.34 Aligned_cols=102 Identities=25% Similarity=0.273 Sum_probs=87.1
Q ss_pred cceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccccccccccceeeccCc
Q 044062 23 RLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCADMGNLTKLHHLNNSNT 102 (567)
Q Consensus 23 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~ 102 (567)
.|++|++++|.++.+|. +..+++|+.|+|++|.++.+|..++.+++|++|+|++| .++.+| .++.+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 58889999999888876 88899999999999999988888999999999999988 677787 7888999999999998
Q ss_pred cccccc--cccccccccccccCceEecc
Q 044062 103 YSLEEM--PVGIGKLTCLQTLSNFVVGK 128 (567)
Q Consensus 103 ~~~~~l--p~~~~~l~~L~~L~~~~~~~ 128 (567)
.+..+ |..+.++++|+.|++..+..
T Consensus 519 -~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 519 -RLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp -CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred -CCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 77777 77888899999888766543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=2.4e-12 Score=112.68 Aligned_cols=130 Identities=23% Similarity=0.239 Sum_probs=104.8
Q ss_pred hccccceEEEecCCCCC--ccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhh-cccccccccccc
Q 044062 19 FKLQRLRVFSLRGYRIS--ELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEK-LCADMGNLTKLH 95 (567)
Q Consensus 19 ~~l~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~-l~~~~~~l~~L~ 95 (567)
...++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++| .+.. +|..++++++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCC
Confidence 34478999999999998 8888889999999999999999988 77899999999999999 5665 676678899999
Q ss_pred eeeccCcccccccc--ccccccccccccCceEeccCCCCCc--cccccccccccceeecccccccccceEEEee
Q 044062 96 HLNNSNTYSLEEMP--VGIGKLTCLQTLSNFVVGKDSGLRL--PELKLLMHLRGTLEISKLENENLRELLLRWT 165 (567)
Q Consensus 96 ~L~l~~~~~~~~lp--~~~~~l~~L~~L~~~~~~~~~~~~~--~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~ 165 (567)
+|++++| .+..+| ..+.++++|+.|++..+........ ..+..++ +|+.|+++.+
T Consensus 99 ~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~--------------~L~~L~l~~n 157 (168)
T 2ell_A 99 HLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP--------------QLTYLDGYDR 157 (168)
T ss_dssp EEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS--------------SCCEETTEET
T ss_pred EEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc--------------cCcEecCCCC
Confidence 9999999 888876 6799999999998776654332211 1344455 6777777663
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=1.9e-12 Score=128.40 Aligned_cols=164 Identities=16% Similarity=0.080 Sum_probs=113.0
Q ss_pred hhhhhhhccccceEEEecCCCCCcccc-ccc-cccccceeeccCCCccccc-HHHHccccCceeeccCccchhhcccc-c
Q 044062 13 SILPKLFKLQRLRVFSLRGYRISELPD-SVG-DLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKLCAD-M 88 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~~~l~~-~~~-~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~~-~ 88 (567)
.+|..++ ..++.|+|++|+++.++. .+. .+++|+.|+|++|.++.++ ..|..+++|++|+|++| .++.++.. |
T Consensus 32 ~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 108 (361)
T 2xot_A 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLF 108 (361)
T ss_dssp SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT
T ss_pred ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHh
Confidence 4776655 468889999999887754 455 8899999999999998875 45888999999999988 67777654 7
Q ss_pred ccccccceeeccCcccccccc-ccccccccccccCceEeccCCCCCccccccccccccceeecccccccccceEEEeeec
Q 044062 89 GNLTKLHHLNNSNTYSLEEMP-VGIGKLTCLQTLSNFVVGKDSGLRLPELKLLMHLRGTLEISKLENENLRELLLRWTCS 167 (567)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~L~~l~l~~~~~ 167 (567)
..+++|+.|++++| .+..++ ..+.++++|+.|++..+.. +.+
T Consensus 109 ~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l-----------------------------~~l------- 151 (361)
T 2xot_A 109 SDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQI-----------------------------SRF------- 151 (361)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-----------------------------CSC-------
T ss_pred CCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcC-----------------------------Cee-------
Confidence 88899999999998 666664 4577777777776543321 110
Q ss_pred CCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCc--cceEEEecCCCc
Q 044062 168 TDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSN--LVTLKFEDCGMC 228 (567)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~ 228 (567)
+. ..+..+..+++|+.|++.++....++..... .++. ++.|++.+|...
T Consensus 152 -----~~------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 152 -----PV------ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ-KLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -----CG------GGTC----CTTCCEEECCSSCCCCCCHHHHH-HSCHHHHTTEECCSSCEE
T ss_pred -----CH------HHhcCcccCCcCCEEECCCCCCCccCHHHhh-hccHhhcceEEecCCCcc
Confidence 00 1122224567889999988888777642211 3444 477888887743
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=4.3e-12 Score=113.66 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=97.7
Q ss_pred CccccccchhhhhhhhhhccccceEEEecCCCCCcccc--ccccccccceeeccCCCcccc-cHHHHccccCceeeccCc
Q 044062 2 LSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELPD--SVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 2 ~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~--~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~ 78 (567)
++|++. .+|..++. ++++|++++|.++.+++ .+..+++|++|+|++|.++.+ |..|..+++|++|+|++|
T Consensus 16 s~~~l~-----~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 16 TGRGLK-----EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TTSCCS-----SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCCcC-----cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 455554 57776654 89999999999998865 389999999999999999987 778999999999999999
Q ss_pred cchhhcccc-cccccccceeeccCccccccc-cccccccccccccCceEec
Q 044062 79 DRLEKLCAD-MGNLTKLHHLNNSNTYSLEEM-PVGIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 79 ~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~~~~~~ 127 (567)
.++.++.. ++.+++|++|++++| .+..+ |..+..+++|+.|++..+.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred -cCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 67777655 889999999999999 66655 5668999999999876554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=1.3e-12 Score=111.94 Aligned_cols=108 Identities=21% Similarity=0.270 Sum_probs=94.2
Q ss_pred hccccceEEEecCCCCC--ccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhh-cccccccccccc
Q 044062 19 FKLQRLRVFSLRGYRIS--ELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEK-LCADMGNLTKLH 95 (567)
Q Consensus 19 ~~l~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~-l~~~~~~l~~L~ 95 (567)
...++++.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++| .+.. +|..++.+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCC
Confidence 44578999999999998 7888889999999999999999988 77899999999999999 5665 777788899999
Q ss_pred eeeccCcccccccc--ccccccccccccCceEeccC
Q 044062 96 HLNNSNTYSLEEMP--VGIGKLTCLQTLSNFVVGKD 129 (567)
Q Consensus 96 ~L~l~~~~~~~~lp--~~~~~l~~L~~L~~~~~~~~ 129 (567)
+|++++| .+..+| ..+.++++|+.|++..+...
T Consensus 92 ~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 92 HLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp EEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred EEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 9999999 788765 67999999999987666543
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=4.8e-13 Score=120.67 Aligned_cols=121 Identities=21% Similarity=0.203 Sum_probs=85.3
Q ss_pred Cccccccc--hhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCcc
Q 044062 2 LSNRLHGY--LALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCD 79 (567)
Q Consensus 2 ~~n~l~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~ 79 (567)
+.|.++|. .+..+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|..+..+++|++|++++|
T Consensus 26 ~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N- 103 (198)
T 1ds9_A 26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN- 103 (198)
T ss_dssp SEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-
T ss_pred heeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-
Confidence 45666663 22233347777888888888888777776 777788888888888887777777777788888888877
Q ss_pred chhhcccccccccccceeeccCccccccccc--cccccccccccCceEe
Q 044062 80 RLEKLCADMGNLTKLHHLNNSNTYSLEEMPV--GIGKLTCLQTLSNFVV 126 (567)
Q Consensus 80 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~~~~~ 126 (567)
.++.+| .++.+++|++|++++| .+..++. .+.++++|+.|++..+
T Consensus 104 ~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 104 QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 666665 5777788888888877 6666553 4666777777665433
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=1.9e-11 Score=107.81 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=99.5
Q ss_pred CCccccccchhhhhhhhhhccc-cceEEEecCCCCCccccccccccccceeeccCCCcccccHH-HHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQ-RLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~ 78 (567)
+++|.++. +| .+..+. +|++|++++|.++.+ +.+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 26 l~~n~l~~-----i~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 26 LRGYKIPV-----IE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp CTTSCCCS-----CC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred eeCCCCch-----hH-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence 45666665 43 455555 999999999999988 7889999999999999999999755 599999999999999
Q ss_pred cchhhccc--ccccccccceeeccCcccccccccc----ccccccccccCceEe
Q 044062 79 DRLEKLCA--DMGNLTKLHHLNNSNTYSLEEMPVG----IGKLTCLQTLSNFVV 126 (567)
Q Consensus 79 ~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~~~~~ 126 (567)
.++.+|. .++.+++|+.|++++| .+..+|.. +..+++|+.|+...+
T Consensus 99 -~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 99 -SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp -CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred -cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 7788887 6899999999999999 78888875 888899998886655
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=2.4e-11 Score=106.67 Aligned_cols=96 Identities=22% Similarity=0.428 Sum_probs=44.9
Q ss_pred eEEEecCCCCCccccccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhcccc-cccccccceeeccCc
Q 044062 25 RVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKLHHLNNSNT 102 (567)
Q Consensus 25 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~l~~~ 102 (567)
+.+++++++++.+|..+. ++|++|+|++|.++.+ |..|..+++|++|+|++| .++.+|.. |+++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 344455554444444332 4455555555555444 333444555555555544 44444433 344555555555554
Q ss_pred ccccccccc-ccccccccccCce
Q 044062 103 YSLEEMPVG-IGKLTCLQTLSNF 124 (567)
Q Consensus 103 ~~~~~lp~~-~~~l~~L~~L~~~ 124 (567)
.+..+|.. +.++++|+.|++.
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECC
T ss_pred -ccceeCHHHhccccCCCEEEeC
Confidence 44444443 4444455444433
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=4.2e-11 Score=105.70 Aligned_cols=111 Identities=27% Similarity=0.413 Sum_probs=91.9
Q ss_pred hhhhhhhccccceEEEecCCCCCcccc-ccccccccceeeccCCCcccccHH-HHccccCceeeccCccchhhcccc-cc
Q 044062 13 SILPKLFKLQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDCDRLEKLCAD-MG 89 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~~-~~ 89 (567)
.+|..+. ++|++|++++|+++.+++ .+..+++|++|++++|.++.+|.. +..+++|++|++++| .++.+|.. ++
T Consensus 21 ~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 97 (177)
T 2o6r_A 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFD 97 (177)
T ss_dssp SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhh
Confidence 4665544 689999999999998864 568999999999999999988654 789999999999998 67777765 68
Q ss_pred cccccceeeccCcccccccccc-ccccccccccCceEec
Q 044062 90 NLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVG 127 (567)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~ 127 (567)
.+++|++|++++| .+..+|.. +.++++|+.|++..+.
T Consensus 98 ~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 98 KLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 9999999999999 78888876 5778899888765543
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=1.4e-10 Score=113.43 Aligned_cols=216 Identities=12% Similarity=0.065 Sum_probs=106.4
Q ss_pred cccCceeeccCccchhhcccc-cccccccceeeccCcccccccccc-ccccccccccCceEecc-CCCCCcc--cccccc
Q 044062 67 LYNLHTLLLEDCDRLEKLCAD-MGNLTKLHHLNNSNTYSLEEMPVG-IGKLTCLQTLSNFVVGK-DSGLRLP--ELKLLM 141 (567)
Q Consensus 67 l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~~~~~~~-~~~~~~~--~l~~l~ 141 (567)
+++|+.++|.+ .++.+++. |..|++|+.+++.++ .+..++.. |.++.++..+....... .....+. .+..+.
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88899998887 57777665 888999999999888 56666544 77766666554211000 0000000 011111
Q ss_pred ccccceeeccccccccc-ceEEEeeecCCCCCCccchhhhhhhccCCCCCCCcEEEEeecCCCCCcccccCCCCCccceE
Q 044062 142 HLRGTLEISKLENENLR-ELLLRWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFSNLVTL 220 (567)
Q Consensus 142 ~l~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 220 (567)
.++ .+.+.. .+. ........-....+++.+.+.+.-.......+. ..+++|+.+
T Consensus 177 --------------~L~~~i~~~~----~~~------l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~-~~~~~L~~l 231 (329)
T 3sb4_A 177 --------------PLETTIQVGA----MGK------LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIR-DYMPNLVSL 231 (329)
T ss_dssp --------------CCEEEEEECT----TCC------HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHH-HHCTTCCEE
T ss_pred --------------ccceeEEecC----CCc------HHHHHhhcccCccccceEEEeeeecHHHHHHHH-HhcCCCeEE
Confidence 111 111100 000 000111111223445555554432111111111 025667777
Q ss_pred EEecCCCcccCC-CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcc-eeeecccccccccccCCCCCcccCCCC
Q 044062 221 KFEDCGMCTVLP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLE-TLRFEVMQEWEDWIPHGSSEGVERFPK 298 (567)
Q Consensus 221 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~ 298 (567)
++++|.+..... .+.++++|+++++.++ ++.++...+.. +++|+ .+.+.+ .++......+ ..|++
T Consensus 232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~-----~~~L~~~l~l~~--~l~~I~~~aF----~~c~~ 298 (329)
T 3sb4_A 232 DISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSN-----CGRLAGTLELPA--SVTAIEFGAF----MGCDN 298 (329)
T ss_dssp ECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-----CTTCCEEEEECT--TCCEECTTTT----TTCTT
T ss_pred ECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhC-----ChhccEEEEEcc--cceEEchhhh----hCCcc
Confidence 777666443333 3566777777777664 55555444333 67777 777765 3333332222 56777
Q ss_pred ccEEEEcCCCCcccCCC----CCCCcccEEE
Q 044062 299 LRELDILRCSKLQGTFP----EHLPALQMLV 325 (567)
Q Consensus 299 L~~L~l~~c~~l~~~~~----~~l~~L~~L~ 325 (567)
|+++++.+ ++++ .++ ..+++|+.++
T Consensus 299 L~~l~l~~-n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 299 LRYVLATG-DKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEEECS-SCCC-EECTTTTCTTCCCCEEE
T ss_pred CCEEEeCC-CccC-ccchhhhcCCcchhhhc
Confidence 77777765 3444 222 3456666664
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.11 E-value=9.7e-11 Score=104.78 Aligned_cols=96 Identities=23% Similarity=0.337 Sum_probs=85.1
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCccccc-HHHHccccCceeeccCc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDC 78 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~ 78 (567)
|++|.++ .+|..|..+++|++|++++|.++.++ .+|..+++|+.|+|++|.++.++ ..|..+++|++|+|++|
T Consensus 38 L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 38 LDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 3555555 57889999999999999999999886 56899999999999999999885 46999999999999999
Q ss_pred cchhhcccc-cccccccceeeccCc
Q 044062 79 DRLEKLCAD-MGNLTKLHHLNNSNT 102 (567)
Q Consensus 79 ~~~~~l~~~-~~~l~~L~~L~l~~~ 102 (567)
.++.+|.. +..+++|+.|++++|
T Consensus 113 -~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 113 -DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp -CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred -CCCeeChhhhhcCccccEEEeCCC
Confidence 78888875 889999999999998
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.10 E-value=4.2e-11 Score=129.48 Aligned_cols=105 Identities=26% Similarity=0.410 Sum_probs=92.8
Q ss_pred cchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccchhhcccc
Q 044062 8 GYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDRLEKLCAD 87 (567)
Q Consensus 8 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~ 87 (567)
+|.+..+|..+..+++|++|+|++|.++.+|..|..+++|++|+|++|.++.+|..|+.+++|++|+|++| .++.+|..
T Consensus 233 ~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~ 311 (727)
T 4b8c_D 233 NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE 311 (727)
T ss_dssp TSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS
T ss_pred CCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh
Confidence 33334588888899999999999999999999999999999999999999999999999999999999999 78899999
Q ss_pred cccccccceeeccCcccccc-ccccccc
Q 044062 88 MGNLTKLHHLNNSNTYSLEE-MPVGIGK 114 (567)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~-lp~~~~~ 114 (567)
|++|++|+.|++++| .+.. +|..+..
T Consensus 312 ~~~l~~L~~L~L~~N-~l~~~~p~~~~~ 338 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGN-PLEKQFLKILTE 338 (727)
T ss_dssp TTSCTTCCCEECTTS-CCCSHHHHHHHH
T ss_pred hhcCCCccEEeCCCC-ccCCCChHHHhh
Confidence 999999999999999 6664 4444443
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=6.8e-11 Score=103.43 Aligned_cols=96 Identities=24% Similarity=0.385 Sum_probs=44.2
Q ss_pred eEEEecCCCCCccccccccccccceeeccCCCcccc-cHHHHccccCceeeccCccchhhcccc-cccccccceeeccCc
Q 044062 25 RVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKLHHLNNSNT 102 (567)
Q Consensus 25 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~l~~~ 102 (567)
+++++++++++.+|..+. ++|+.|+|++|.++.+ |..|..+++|++|+|++| .++.+|.. |+++++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 344445444444443332 4444555555554444 333444555555555544 34444433 344455555555544
Q ss_pred ccccccccc-ccccccccccCce
Q 044062 103 YSLEEMPVG-IGKLTCLQTLSNF 124 (567)
Q Consensus 103 ~~~~~lp~~-~~~l~~L~~L~~~ 124 (567)
.+..+|.. +.++++|+.|++.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECC
T ss_pred -ccCEeCHHHhcCCCCCCEEEeC
Confidence 44444432 4444444444433
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=4.7e-12 Score=114.09 Aligned_cols=113 Identities=23% Similarity=0.305 Sum_probs=95.7
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccccccccccccceeeccCCCcccccHHHHccccCceeeccCccc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIKTLPESVNKLYNLHTLLLEDCDR 80 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 80 (567)
|++|.+++ +| .+.++++|++|++++|.++.+|..+..+++|+.|++++|.++.+| .+..+++|++|++++| .
T Consensus 55 ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~ 126 (198)
T 1ds9_A 55 LSTNNIEK-----IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN-K 126 (198)
T ss_dssp CSEEEESC-----CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEE-E
T ss_pred CCCCCCcc-----cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCC-c
Confidence 46677776 56 889999999999999999999888888999999999999999987 6999999999999998 6
Q ss_pred hhhccc--ccccccccceeeccCcccccccccc-----------ccccccccccC
Q 044062 81 LEKLCA--DMGNLTKLHHLNNSNTYSLEEMPVG-----------IGKLTCLQTLS 122 (567)
Q Consensus 81 ~~~l~~--~~~~l~~L~~L~l~~~~~~~~lp~~-----------~~~l~~L~~L~ 122 (567)
++.++. .++.+++|++|++++| .+...++. +..+++|+.|+
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 776654 5889999999999999 55443222 67788888886
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=1.2e-10 Score=104.19 Aligned_cols=96 Identities=22% Similarity=0.300 Sum_probs=83.4
Q ss_pred CCccccccchhhhhhh--hhhccccceEEEecCCCCCcc-ccccccccccceeeccCCCccccc-HHHHccccCceeecc
Q 044062 1 MLSNRLHGYLALSILP--KLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLE 76 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~ 76 (567)
|++|.+++ +++ .|..+++|++|++++|+++.+ |.+|..+++|++|+|++|.++.++ ..|..+++|++|+|+
T Consensus 36 l~~n~i~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 36 LNDNELGR-----ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp CCSCCCCS-----BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred CCCCcCCc-----cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 46777776 554 389999999999999999987 678999999999999999999885 458999999999999
Q ss_pred Cccchhhc-ccccccccccceeeccCc
Q 044062 77 DCDRLEKL-CADMGNLTKLHHLNNSNT 102 (567)
Q Consensus 77 ~~~~~~~l-~~~~~~l~~L~~L~l~~~ 102 (567)
+| .+..+ |..++.+++|++|++++|
T Consensus 111 ~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 111 DN-QISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred CC-cCCeeCHHHhhcCCCCCEEEeCCC
Confidence 99 55555 667999999999999999
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=1.8e-10 Score=101.07 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=86.2
Q ss_pred hhhhhhhhhccccceEEEecCCCCCcc-ccccccccccceeeccCCCcccccHH-HHccccCceeeccCccchhhcccc-
Q 044062 11 ALSILPKLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDCDRLEKLCAD- 87 (567)
Q Consensus 11 ~~~~~~~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~~- 87 (567)
+..+|..+. ++|++|++++|+++.+ |..|..+++|++|+|++|.++.+|.. |..+++|++|+|++| .++.+|..
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 100 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGA 100 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHH
Confidence 335887775 8999999999999988 56789999999999999999999765 689999999999999 78888876
Q ss_pred cccccccceeeccCccccccccccccccc
Q 044062 88 MGNLTKLHHLNNSNTYSLEEMPVGIGKLT 116 (567)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 116 (567)
++.+++|+.|++++| .+...+.++..+.
T Consensus 101 ~~~l~~L~~L~L~~N-~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNN-PWDCECRDIMYLR 128 (174)
T ss_dssp TTTCTTCSEEECCSS-CBCTTBGGGHHHH
T ss_pred hccccCCCEEEeCCC-CcccccccHHHHH
Confidence 899999999999999 6665554444333
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=2.5e-10 Score=99.81 Aligned_cols=97 Identities=26% Similarity=0.365 Sum_probs=83.2
Q ss_pred CccccccchhhhhhhhhhccccceEEEecCCCCCcc-ccccccccccceeeccCCCcccccHH-HHccccCceeeccCcc
Q 044062 2 LSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDCD 79 (567)
Q Consensus 2 ~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~ 79 (567)
++|++. .+|..+. ++|++|++++|+++.+ |..|..+++|++|+|++|.++.+|.. |..+++|++|+|++|
T Consensus 17 s~n~l~-----~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N- 88 (170)
T 3g39_A 17 SGKSLA-----SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN- 88 (170)
T ss_dssp TTSCCS-----SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CCCCcC-----ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-
Confidence 455555 4777664 7999999999999988 56789999999999999999998665 789999999999999
Q ss_pred chhhcccc-cccccccceeeccCcccccc
Q 044062 80 RLEKLCAD-MGNLTKLHHLNNSNTYSLEE 107 (567)
Q Consensus 80 ~~~~l~~~-~~~l~~L~~L~l~~~~~~~~ 107 (567)
.++.+|.. ++.+++|+.|++++| .+.-
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N-~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNN-PWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCC-CCCC
Confidence 78888775 899999999999999 5443
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.02 E-value=3.6e-10 Score=99.68 Aligned_cols=99 Identities=27% Similarity=0.394 Sum_probs=84.9
Q ss_pred CCccccccchhhhhhh-hhhccccceEEEecCCCCCcccc-ccccccccceeeccCCCcccccHH-HHccccCceeeccC
Q 044062 1 MLSNRLHGYLALSILP-KLFKLQRLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLED 77 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~ 77 (567)
+++|.+++ +|+ .+..+++|++|++++|+++.+++ .+..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 35 l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 35 LESNKLQS-----LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109 (177)
T ss_dssp CCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCCcccE-----eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcC
Confidence 46677776 454 67999999999999999998864 469999999999999999988654 78999999999999
Q ss_pred ccchhhcccc-cccccccceeeccCccccc
Q 044062 78 CDRLEKLCAD-MGNLTKLHHLNNSNTYSLE 106 (567)
Q Consensus 78 ~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~ 106 (567)
| .++.+|.. +..+++|+.|++++| .+.
T Consensus 110 N-~l~~~~~~~~~~l~~L~~L~l~~N-~~~ 137 (177)
T 2o6r_A 110 N-QLKSVPDGIFDRLTSLQKIWLHTN-PWD 137 (177)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred C-cceEeCHHHhcCCcccCEEEecCC-Cee
Confidence 9 77888876 688999999999999 444
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.97 E-value=2.5e-08 Score=99.93 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=37.2
Q ss_pred CCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCcc
Q 044062 385 PRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVK 464 (567)
Q Consensus 385 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~ 464 (567)
..+.+|+.+.+.+ .++.+ +...| ..+.+|+.+.+.+ .++.+...++ .+. .+|+.+.+... ++.
T Consensus 294 ~~~~~L~~i~l~~--~i~~I--~~~aF-~~c~~L~~i~lp~--~v~~I~~~aF----~~c----~~L~~i~lp~~--l~~ 356 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVKFI--GEEAF-ESCTSLVSIDLPY--LVEEIGKRSF----RGC----TSLSNINFPLS--LRK 356 (394)
T ss_dssp TTCTTCCEEEECT--TCCEE--CTTTT-TTCTTCCEECCCT--TCCEECTTTT----TTC----TTCCEECCCTT--CCE
T ss_pred ccccccccccccc--cccee--chhhh-cCCCCCCEEEeCC--cccEEhHHhc----cCC----CCCCEEEECcc--ccE
Confidence 3444455555432 23333 33334 4555555555532 3444544444 332 45555555431 444
Q ss_pred cc-cCCCCCCCccEEEEcc
Q 044062 465 LP-QSSLGLNSLRDIEIYK 482 (567)
Q Consensus 465 ~~-~~~~~~~~L~~L~l~~ 482 (567)
+. ..+.+|++|+.+++..
T Consensus 357 I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECTTTBTTCTTCCEEEEEG
T ss_pred ehHHHhhCCCCCCEEEECC
Confidence 42 2344555666665543
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=2.4e-08 Score=97.50 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=48.7
Q ss_pred CCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCcee-EEEccCCCCCcccc
Q 044062 388 PKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLE-YLGLRSCEGLVKLP 466 (567)
Q Consensus 388 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~-~L~l~~c~~l~~~~ 466 (567)
++|+.++++++. ++.+ +...| ..+.+|+++.+.+ +++.++..++ .++ .+|+ .+++.+ .++.++
T Consensus 226 ~~L~~l~L~~n~-i~~I--~~~aF-~~~~~L~~l~l~~--ni~~I~~~aF----~~~----~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 226 PNLVSLDISKTN-ATTI--PDFTF-AQKKYLLKIKLPH--NLKTIGQRVF----SNC----GRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp TTCCEEECTTBC-CCEE--CTTTT-TTCTTCCEEECCT--TCCEECTTTT----TTC----TTCCEEEEECT--TCCEEC
T ss_pred CCCeEEECCCCC-ccee--cHhhh-hCCCCCCEEECCc--ccceehHHHh----hCC----hhccEEEEEcc--cceEEc
Confidence 445555555443 4444 44444 5555555555554 1555555544 333 4555 555554 344442
Q ss_pred -cCCCCCCCccEEEEccCCCCcccCCcCC--CCCccEEE
Q 044062 467 -QSSLGLNSLRDIEIYKCSSLVSFPEVAL--PSKLRKIR 502 (567)
Q Consensus 467 -~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~ 502 (567)
..+.+|++|+.+++.+ +.++.++...| +++|+.++
T Consensus 290 ~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 3445556666666554 34555544433 34455443
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=7e-09 Score=102.17 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=51.2
Q ss_pred hhhhhhccccceEEEecC-CCCCccc-cccccccccceeeccCCCccccc-HHHHccccCceeeccCccchhhccccc-c
Q 044062 14 ILPKLFKLQRLRVFSLRG-YRISELP-DSVGDLRYLRHLNLSGTEIKTLP-ESVNKLYNLHTLLLEDCDRLEKLCADM-G 89 (567)
Q Consensus 14 ~~~~~~~l~~L~~L~L~~-~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~~~-~ 89 (567)
+|. ++.+++|+.|+|++ |.++.++ .+|..+++|+.|+|++|.++.+| ..|..+++|++|+|++| .+..+|..+ .
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcc
Confidence 555 66666666666664 6666554 34566666666666666666553 34566666666666666 555555542 3
Q ss_pred cccccceeeccCc
Q 044062 90 NLTKLHHLNNSNT 102 (567)
Q Consensus 90 ~l~~L~~L~l~~~ 102 (567)
.+. |+.|++.+|
T Consensus 102 ~~~-L~~l~l~~N 113 (347)
T 2ifg_A 102 GLS-LQELVLSGN 113 (347)
T ss_dssp SCC-CCEEECCSS
T ss_pred cCC-ceEEEeeCC
Confidence 333 666666665
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.77 E-value=4.5e-07 Score=90.52 Aligned_cols=94 Identities=14% Similarity=0.248 Sum_probs=51.3
Q ss_pred ccceEEEecCCCCCccc-cccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhcccc-cccccccceee
Q 044062 22 QRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKLHHLN 98 (567)
Q Consensus 22 ~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~ 98 (567)
..++.+.+-. .++.++ .+|.++ +|+.+.+..+ ++.++. +|.+ .+|+.+.+.. .++.++.. |..|++|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeee
Confidence 4455555443 344443 455554 5666666554 555533 3444 3566666664 35555433 66677777777
Q ss_pred ccCccccccccccccccccccccC
Q 044062 99 NSNTYSLEEMPVGIGKLTCLQTLS 122 (567)
Q Consensus 99 l~~~~~~~~lp~~~~~l~~L~~L~ 122 (567)
+.++ .+..++.......+|+.+.
T Consensus 187 l~~n-~l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 187 LSKT-KITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CTTS-CCSEECTTTTTTCCCSEEE
T ss_pred cCCC-cceEechhhEeecccCEEE
Confidence 7666 5666665533345555553
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=3.6e-06 Score=83.96 Aligned_cols=123 Identities=11% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCcc-----ccchhhhhHHHhhhhhccCceeEEEccCCCCC
Q 044062 388 PKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQ-----SLVAEEEKDQQQQLCELSCRLEYLGLRSCEGL 462 (567)
Q Consensus 388 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l 462 (567)
.+|+.+.+.+ .++.+ +...| ..+++|+.+.+.+ +... .+....+ .++ ++|+.+.+.+ .+
T Consensus 248 ~~L~~i~lp~--~i~~I--~~~aF-~~c~~L~~l~l~~-~~~~~~~~~~I~~~aF----~~c----~~L~~l~l~~--~i 311 (401)
T 4fdw_A 248 SGITTVKLPN--GVTNI--ASRAF-YYCPELAEVTTYG-STFNDDPEAMIHPYCL----EGC----PKLARFEIPE--SI 311 (401)
T ss_dssp CCCSEEEEET--TCCEE--CTTTT-TTCTTCCEEEEES-SCCCCCTTCEECTTTT----TTC----TTCCEECCCT--TC
T ss_pred CCccEEEeCC--CccEE--ChhHh-hCCCCCCEEEeCC-ccccCCcccEECHHHh----hCC----ccCCeEEeCC--ce
Confidence 5677777743 25555 55555 6777777777765 2222 3555555 444 6777777763 35
Q ss_pred ccccc-CCCCCCCccEEEEccCCCCcccCCcCC--CCCccEEEEccCcccccccc-ccccCCCCCccEEEccc
Q 044062 463 VKLPQ-SSLGLNSLRDIEIYKCSSLVSFPEVAL--PSKLRKIRISSCDALKSLPE-AWMCDTNSSLEILSIKH 531 (567)
Q Consensus 463 ~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~l~~-~~~~l~~~~L~~L~l~~ 531 (567)
+.++. .+.+|++|+.+.+.. .++.+....| + +|+.+++.++ .+..++. .+.+++ .+++.|++-.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~-~~l~~l~vp~ 379 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFP-DDITVIRVPA 379 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSC-TTCCEEEECG
T ss_pred EEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCC-CCccEEEeCH
Confidence 55533 455677777777754 3666655444 4 7777777554 3444433 344442 3567777664
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=1.5e-08 Score=99.72 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=83.5
Q ss_pred EEEecCC-CCCccccccccccccceeeccC-CCccccc-HHHHccccCceeeccCccchhhccc-ccccccccceeeccC
Q 044062 26 VFSLRGY-RISELPDSVGDLRYLRHLNLSG-TEIKTLP-ESVNKLYNLHTLLLEDCDRLEKLCA-DMGNLTKLHHLNNSN 101 (567)
Q Consensus 26 ~L~L~~~-~~~~l~~~~~~l~~L~~L~L~~-~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~-~~~~l~~L~~L~l~~ 101 (567)
.++++++ +++.+|. +..+++|+.|+|++ |.++.+| ..|..+++|++|+|++| .+..++. .|++|++|+.|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 8999998 99999999999996 9999886 56999999999999999 6777765 489999999999999
Q ss_pred ccccccccccccccccccccCceEec
Q 044062 102 TYSLEEMPVGIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 102 ~~~~~~lp~~~~~l~~L~~L~~~~~~ 127 (567)
| .+..+|..+.....|+.|++..+.
T Consensus 90 N-~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp S-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred C-ccceeCHHHcccCCceEEEeeCCC
Confidence 9 889998774443348888765543
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.63 E-value=3.5e-06 Score=84.24 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=32.3
Q ss_pred CceeEEEccCCCCCccccc-CCCCCCCccEEEEccCCCCcccCCcCC--CCCccEEEEccCcccccccc-ccccCCCCCc
Q 044062 449 CRLEYLGLRSCEGLVKLPQ-SSLGLNSLRDIEIYKCSSLVSFPEVAL--PSKLRKIRISSCDALKSLPE-AWMCDTNSSL 524 (567)
Q Consensus 449 ~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~l~~-~~~~l~~~~L 524 (567)
.+|+.+.+.+ .++.+.. .+.++++|+.+++.+ .++.+....| +.+|+.+.+.. .++.+.. ++.+. ++|
T Consensus 297 ~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C--~~L 368 (394)
T 4fs7_A 297 SSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGC--INL 368 (394)
T ss_dssp TTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTC--TTC
T ss_pred cccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCC--CCC
Confidence 4455554432 2333322 344555555555542 2444443333 34555555522 1444332 33333 455
Q ss_pred cEEEcc
Q 044062 525 EILSIK 530 (567)
Q Consensus 525 ~~L~l~ 530 (567)
+.+++.
T Consensus 369 ~~i~lp 374 (394)
T 4fs7_A 369 KKVELP 374 (394)
T ss_dssp CEEEEE
T ss_pred CEEEEC
Confidence 555553
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=1.2e-07 Score=81.64 Aligned_cols=94 Identities=9% Similarity=0.137 Sum_probs=69.6
Q ss_pred CCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCccc-c
Q 044062 388 PKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKL-P 466 (567)
Q Consensus 388 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~ 466 (567)
..|+.|++++|. +++. ....+ ..+++|++|++++|..+++-....++..- +. .++|++|++++|..++.- .
T Consensus 61 ~~L~~LDLs~~~-Itd~--GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-~~---~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI--GFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLE-NL---QKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCC-CCGG--GGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCH-HH---HHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCC-ccHH--HHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcc-cc---cCCCCEEEcCCCCcCCHHHH
Confidence 369999999998 7776 66666 78999999999999998876655552210 00 157999999999988842 1
Q ss_pred cCCCCCCCccEEEEccCCCCccc
Q 044062 467 QSSLGLNSLRDIEIYKCSSLVSF 489 (567)
Q Consensus 467 ~~~~~~~~L~~L~l~~c~~l~~~ 489 (567)
..+..+++|++|++++|+.+++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHhcCCCCCEEECCCCCCCCch
Confidence 23456889999999999887763
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=4.9e-06 Score=83.18 Aligned_cols=106 Identities=9% Similarity=0.160 Sum_probs=73.2
Q ss_pred hhhhh-hhhccc-cceEEEecCCCCCcc-ccccccccccceeeccCCC---ccccc-HHHHccccCceeeccCccchhhc
Q 044062 12 LSILP-KLFKLQ-RLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTE---IKTLP-ESVNKLYNLHTLLLEDCDRLEKL 84 (567)
Q Consensus 12 ~~~~~-~~~~l~-~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~---l~~lp-~~~~~l~~L~~L~L~~~~~~~~l 84 (567)
..++. .|..++ .|+.+.+-.+ ++.+ ..+|.+|++|+.+.+..+. ++.++ ..|..+.+|+.+.+.. .++.+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I 128 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEI 128 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--cccee
Confidence 34555 577774 5898888644 6666 3678999999999887653 66664 4478888888887765 35566
Q ss_pred ccc-cccccccceeeccCccccccccc-cccccccccccC
Q 044062 85 CAD-MGNLTKLHHLNNSNTYSLEEMPV-GIGKLTCLQTLS 122 (567)
Q Consensus 85 ~~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~ 122 (567)
+.. |..+.+|+.+.+... +..++. .+.++.+|+.+.
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~ 166 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVT 166 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred hhhhhhhhcccccccccce--eeeecccceeccccccccc
Confidence 554 778888888888654 444443 366677776654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=4.9e-08 Score=96.55 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=80.8
Q ss_pred CCccccccchhhhhhhhhhc-cccceEEEecCCCCCcc-ccc-cccccccceeeccCCCcccc-cHHH-----HccccCc
Q 044062 1 MLSNRLHGYLALSILPKLFK-LQRLRVFSLRGYRISEL-PDS-VGDLRYLRHLNLSGTEIKTL-PESV-----NKLYNLH 71 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~-l~~L~~L~L~~~~~~~l-~~~-~~~l~~L~~L~L~~~~l~~l-p~~~-----~~l~~L~ 71 (567)
|++|.++......+...+.. .++|++|+|++|.++.. ... ...+++|+.|+|++|.+++. ...+ ...++|+
T Consensus 79 Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~ 158 (372)
T 3un9_A 79 LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158 (372)
T ss_dssp CTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCC
T ss_pred ecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 45677766333333333332 26889999998887632 122 35577888999998888743 2223 2357789
Q ss_pred eeeccCccchhh-----cccccccccccceeeccCcccccc-----ccccccccccccccCceEec
Q 044062 72 TLLLEDCDRLEK-----LCADMGNLTKLHHLNNSNTYSLEE-----MPVGIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 72 ~L~L~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~~~~~~ 127 (567)
+|+|++| .++. ++..+..+++|++|++++| .+.. ++..+...++|+.|++..+.
T Consensus 159 ~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 159 TLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp EEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred eeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 9999988 4433 4444567888999999888 5553 23446667788888766554
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=4.1e-07 Score=78.24 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=35.0
Q ss_pred CCCCcCeEEEccCCCccccccccCccccC----CCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCC
Q 044062 386 RIPKLEELEIKNIKNETYIWKSHNGLLQD----ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEG 461 (567)
Q Consensus 386 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~ 461 (567)
++++|++|++++|..+++. ....+ .. .++|++|++++|..+++-....+ ..+ ++|+.|++++|+.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~--gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L----~~~----~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDG--CLERL-SQLENLQKSMLEMEIISCGNVTDKGIIAL----HHF----RNLKYLFLSDLPG 151 (176)
T ss_dssp TCSCCCEEEEESCTTCCHH--HHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHG----GGC----TTCCEEEEESCTT
T ss_pred CCCCCCEEEeCCCCccCHH--HHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHH----hcC----CCCCEEECCCCCC
Confidence 4455666666666555554 33333 22 23566666666666555444333 223 5666666666665
Q ss_pred Cc
Q 044062 462 LV 463 (567)
Q Consensus 462 l~ 463 (567)
++
T Consensus 152 It 153 (176)
T 3e4g_A 152 VK 153 (176)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.17 E-value=6.2e-07 Score=88.60 Aligned_cols=122 Identities=18% Similarity=0.174 Sum_probs=86.0
Q ss_pred CCccccccchhhhhhhhhhccccceEEEecCCCCCccc-cc----c-ccccccceeeccCCCccc-----ccHHHHcccc
Q 044062 1 MLSNRLHGYLALSILPKLFKLQRLRVFSLRGYRISELP-DS----V-GDLRYLRHLNLSGTEIKT-----LPESVNKLYN 69 (567)
Q Consensus 1 l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~-~~----~-~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~ 69 (567)
|++|.++......+ ...+++|+.|+|++|.++... .. + ...++|+.|+|++|.+++ ++..+...++
T Consensus 108 Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 184 (372)
T 3un9_A 108 LASCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184 (372)
T ss_dssp CTTCCCCHHHHHHT---HHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS
T ss_pred ecCCCCCHHHHHHH---HHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC
Confidence 56777765222222 345668999999999987431 22 2 346889999999999874 4556688999
Q ss_pred CceeeccCccchhh-----cccccccccccceeeccCcccccc-----ccccccccccccccCceEec
Q 044062 70 LHTLLLEDCDRLEK-----LCADMGNLTKLHHLNNSNTYSLEE-----MPVGIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 70 L~~L~L~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~~~~~~ 127 (567)
|++|+|++| .+++ ++..+...++|++|++++| .+.. ++..+...++|+.|++..+.
T Consensus 185 L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 185 VTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 999999999 4443 3455677889999999999 6653 33345566778888765553
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.14 E-value=1.2e-06 Score=77.28 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=84.3
Q ss_pred hhhhhhhccccceEEEecCC-CCCc-----cccccccccccceeeccCCCccc-----ccHHHHccccCceeeccCccch
Q 044062 13 SILPKLFKLQRLRVFSLRGY-RISE-----LPDSVGDLRYLRHLNLSGTEIKT-----LPESVNKLYNLHTLLLEDCDRL 81 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~-~~~~-----l~~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~~ 81 (567)
.+...+...+.|++|+|++| .+.. +...+...++|++|+|++|.+.+ +...+...+.|++|+|++| .+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence 34456778899999999999 8872 34556778999999999999874 3455677789999999998 44
Q ss_pred hh-----cccccccccccceeec--cCcccccc-----ccccccccccccccCceEec
Q 044062 82 EK-----LCADMGNLTKLHHLNN--SNTYSLEE-----MPVGIGKLTCLQTLSNFVVG 127 (567)
Q Consensus 82 ~~-----l~~~~~~l~~L~~L~l--~~~~~~~~-----lp~~~~~l~~L~~L~~~~~~ 127 (567)
+. +...+...+.|++|++ ++| .+.. +...+...++|+.|++..+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 43 4455677889999999 777 5553 33445666888888775543
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.11 E-value=0.00041 Score=69.12 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=54.4
Q ss_pred cCCCCccEEEEcCCCCccccchhhhhHHHhhhhhccCceeEEEccCCCCCccccc-CCCCCCCccEEEEccCCCCcccCC
Q 044062 413 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQ-SSLGLNSLRDIEIYKCSSLVSFPE 491 (567)
Q Consensus 413 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~ 491 (567)
..+..|+.+.+.+ .+..+...++ .+. .+|+.+.+.. .++.++. .+.+|.+|+.+.+.+ .++.+..
T Consensus 262 ~~c~~L~~i~lp~--~~~~I~~~aF----~~c----~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~ 327 (394)
T 4gt6_A 262 DSCAYLASVKMPD--SVVSIGTGAF----MNC----PALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD 327 (394)
T ss_dssp TTCSSCCEEECCT--TCCEECTTTT----TTC----TTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT
T ss_pred eecccccEEeccc--ccceecCccc----ccc----cccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH
Confidence 5566666666643 3334444444 222 5666666642 3454533 345666777776654 3555555
Q ss_pred cCC--CCCccEEEEccCcccccccc-ccccCCCCCccEEEccc
Q 044062 492 VAL--PSKLRKIRISSCDALKSLPE-AWMCDTNSSLEILSIKH 531 (567)
Q Consensus 492 ~~~--~~~L~~L~l~~c~~l~~l~~-~~~~l~~~~L~~L~l~~ 531 (567)
..| +.+|+.+.+.. .++.+.. ++.+. ++|+.+++.+
T Consensus 328 ~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C--~~L~~i~~~~ 366 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPS--SVTKIPESAFSNC--TALNNIEYSG 366 (394)
T ss_dssp TTTTTCTTCCEEEECT--TCCBCCGGGGTTC--TTCCEEEESS
T ss_pred hHhhCCCCCCEEEECc--ccCEEhHhHhhCC--CCCCEEEECC
Confidence 444 45677766632 3555543 44444 6677777665
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.07 E-value=1.8e-06 Score=76.13 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=39.7
Q ss_pred cccccccceeeccCC-Cccc-----ccHHHHccccCceeeccCccchhh-----cccccccccccceeeccCcccccc--
Q 044062 41 VGDLRYLRHLNLSGT-EIKT-----LPESVNKLYNLHTLLLEDCDRLEK-----LCADMGNLTKLHHLNNSNTYSLEE-- 107 (567)
Q Consensus 41 ~~~l~~L~~L~L~~~-~l~~-----lp~~~~~l~~L~~L~L~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~-- 107 (567)
+...+.|+.|+|++| .+.+ +...+...++|++|+|++| .+++ +...+...+.|++|++++| .+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 345556666666665 5542 2333444555666666665 2221 2222334455666666665 3432
Q ss_pred ---ccccccccccccccCc
Q 044062 108 ---MPVGIGKLTCLQTLSN 123 (567)
Q Consensus 108 ---lp~~~~~l~~L~~L~~ 123 (567)
+...+...++|++|++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHhCCCceEEEe
Confidence 2333444555555554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=6.4e-06 Score=76.46 Aligned_cols=103 Identities=21% Similarity=0.181 Sum_probs=64.2
Q ss_pred hhccccceE--EEecCCCCCccccc---c-ccccccceeeccCCCcccc---cHHHHccccCceeeccCccchhhccccc
Q 044062 18 LFKLQRLRV--FSLRGYRISELPDS---V-GDLRYLRHLNLSGTEIKTL---PESVNKLYNLHTLLLEDCDRLEKLCADM 88 (567)
Q Consensus 18 ~~~l~~L~~--L~L~~~~~~~l~~~---~-~~l~~L~~L~L~~~~l~~l---p~~~~~l~~L~~L~L~~~~~~~~l~~~~ 88 (567)
+...+.|+. ++++.|....++.. + .++++|+.|+|++|.++.+ |..+..+++|++|+|++| .+..+ ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhh
Confidence 455555655 56666654433321 1 4577888888888877754 355677888888888887 55554 335
Q ss_pred cccc--ccceeeccCcccccccc-------ccccccccccccC
Q 044062 89 GNLT--KLHHLNNSNTYSLEEMP-------VGIGKLTCLQTLS 122 (567)
Q Consensus 89 ~~l~--~L~~L~l~~~~~~~~lp-------~~~~~l~~L~~L~ 122 (567)
..++ +|++|++++|..-..+| ..+..+++|+.|+
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 5555 78888888873222333 1256677777776
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.92 E-value=7.8e-06 Score=80.05 Aligned_cols=63 Identities=24% Similarity=0.253 Sum_probs=31.3
Q ss_pred CCCcceeeecccccc---ccccc-CCCCCcccCCCCccEEEEcCCCCcccCCCCCCCcccEEEEecch
Q 044062 267 FPCLETLRFEVMQEW---EDWIP-HGSSEGVERFPKLRELDILRCSKLQGTFPEHLPALQMLVIQECK 330 (567)
Q Consensus 267 ~~~L~~L~l~~~~~~---~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~ 330 (567)
+++|+.|.+.+...- ..|.. ..+...+..+|+|+.|.+.++..+. ..+...++|++|.+..|.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGG 204 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSB
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCC
Confidence 688888888653210 01111 1111222456777777777753332 111234566666666543
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.90 E-value=6.4e-06 Score=80.68 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=9.8
Q ss_pred cCCCCccEEEEcC
Q 044062 294 ERFPKLRELDILR 306 (567)
Q Consensus 294 ~~~~~L~~L~l~~ 306 (567)
..+++|+.|.+..
T Consensus 136 ~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 136 EKFAHFEGLFWGD 148 (362)
T ss_dssp HHHTTCSEEEECC
T ss_pred hhcchhhheeecC
Confidence 4578888888865
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=4.3e-06 Score=77.59 Aligned_cols=79 Identities=27% Similarity=0.337 Sum_probs=41.7
Q ss_pred hccccceEEEecCCCCCccc---cccccccccceeeccCCCcccccHHHHccc--cCceeeccCccchhhcc-------c
Q 044062 19 FKLQRLRVFSLRGYRISELP---DSVGDLRYLRHLNLSGTEIKTLPESVNKLY--NLHTLLLEDCDRLEKLC-------A 86 (567)
Q Consensus 19 ~~l~~L~~L~L~~~~~~~l~---~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~--~L~~L~L~~~~~~~~l~-------~ 86 (567)
.++++|++|+|++|.++.++ ..+..+++|+.|+|++|.++.+ ..+..+. +|++|+|++|.--+.+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 44556666666666665442 3345566666666666666654 2233333 66666666663222222 1
Q ss_pred ccccccccceee
Q 044062 87 DMGNLTKLHHLN 98 (567)
Q Consensus 87 ~~~~l~~L~~L~ 98 (567)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244556666555
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.78 E-value=0.0037 Score=61.67 Aligned_cols=281 Identities=14% Similarity=0.112 Sum_probs=151.4
Q ss_pred CCCccceEEEecCCCcccCC--CCCCCCCCcEEEEeCCcceeeecccccCCCCCCCCCCcceeeecccccccccccCCCC
Q 044062 213 SFSNLVTLKFEDCGMCTVLP--SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEVMQEWEDWIPHGSS 290 (567)
Q Consensus 213 ~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 290 (567)
...+|+.+.+... ...++ .+.++.+|+++.+..+ ++.++...+.. + +|+++.+.. .++......+
T Consensus 44 ~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~-----c-~l~~i~~~~--~l~~I~~~aF- 110 (379)
T 4h09_A 44 DRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFAD-----T-KLQSYTGME--RVKKFGDYVF- 110 (379)
T ss_dssp GGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTT-----C-CCCEEEECT--TCCEECTTTT-
T ss_pred cccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcC-----C-CCceEECCc--eeeEecccee-
Confidence 4567888888642 23333 5778899999999753 56666555443 4 566666642 2333322222
Q ss_pred CcccCCCCccEEEEcCCCCcccCCCC---CCCcccEEEEecchh-h-hhhcCCCCCcceEEecCCCCccc----------
Q 044062 291 EGVERFPKLRELDILRCSKLQGTFPE---HLPALQMLVIQECKE-L-LVSITSLPALCKLEIDGCKKVVW---------- 355 (567)
Q Consensus 291 ~~~~~~~~L~~L~l~~c~~l~~~~~~---~l~~L~~L~i~~~~~-l-~~~~~~~~~L~~L~l~~~~~~~~---------- 355 (567)
. ..+|+.+.+... +. .+.. .-.+++.+.+...-. + ...+..+..++.+.+........
T Consensus 111 ---~-~~~L~~i~lp~~--~~-~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (379)
T 4h09_A 111 ---Q-GTDLDDFEFPGA--TT-EIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKN 183 (379)
T ss_dssp ---T-TCCCSEEECCTT--CC-EECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETT
T ss_pred ---c-cCCcccccCCCc--cc-cccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccc
Confidence 1 236888887542 22 1111 112455555543211 1 22344566677666655443222
Q ss_pred ------cccCCCCCcccccccCCCccccccCCCCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcCCCCc
Q 044062 356 ------RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDSCPKL 429 (567)
Q Consensus 356 ------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 429 (567)
......+....+.... .......+..+.+|+.+.+... +..+ ....| ..+..|+.+.+.. .+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~f~~~~~l~~i~~~~~--~~~i--~~~~f-~~~~~L~~i~lp~--~v 251 (379)
T 4h09_A 184 KTILESYPAAKTGTEFTIPSTV-----KTVTAYGFSYGKNLKKITITSG--VTTL--GDGAF-YGMKALDEIAIPK--NV 251 (379)
T ss_dssp SSEEEECCTTCCCSEEECCTTC-----CEECTTTTTTCSSCSEEECCTT--CCEE--CTTTT-TTCSSCCEEEECT--TC
T ss_pred cceeccccccccccccccccce-----eEEeecccccccccceeeeccc--eeEE--ccccc-cCCccceEEEcCC--Cc
Confidence 0011111111111110 0111133455667777766542 4444 44445 6778888888854 46
Q ss_pred cccchhhhhHHHhhhhhccCceeEEEccCCCCCccccc-CCCCCCCccEEEEccCCCCcccCCcCC--CCCccEEEEccC
Q 044062 430 QSLVAEEEKDQQQQLCELSCRLEYLGLRSCEGLVKLPQ-SSLGLNSLRDIEIYKCSSLVSFPEVAL--PSKLRKIRISSC 506 (567)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c 506 (567)
+.+...++ .+. .+|+.+.+.. .++.++. .+.++++|+.+.+.+ ..++.+....| +.+|+.+.+..
T Consensus 252 ~~I~~~aF----~~~----~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~- 319 (379)
T 4h09_A 252 TSIGSFLL----QNC----TALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT- 319 (379)
T ss_dssp CEECTTTT----TTC----TTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT-
T ss_pred cEeCcccc----cee----ehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc-
Confidence 66666655 333 6788887754 3555543 456788888888876 45777766555 56788888842
Q ss_pred cccccccc-ccccCCCCCccEEEcccccccccccccC
Q 044062 507 DALKSLPE-AWMCDTNSSLEILSIKHCCSLTYIAEAQ 542 (567)
Q Consensus 507 ~~l~~l~~-~~~~l~~~~L~~L~l~~c~~l~~~~~~~ 542 (567)
.++.+.. ++.+. ++|+.+.+.. +++.+....
T Consensus 320 -~l~~I~~~aF~~C--~~L~~i~ip~--~v~~I~~~a 351 (379)
T 4h09_A 320 -ALKTIQVYAFKNC--KALSTISYPK--SITLIESGA 351 (379)
T ss_dssp -TCCEECTTTTTTC--TTCCCCCCCT--TCCEECTTT
T ss_pred -cccEEHHHHhhCC--CCCCEEEECC--ccCEEchhH
Confidence 3555544 45554 6777777752 455554433
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.61 E-value=0.0019 Score=63.91 Aligned_cols=79 Identities=10% Similarity=0.199 Sum_probs=44.7
Q ss_pred hhccccceEEEecCCCCCccc-cccccccccceeeccCCCcccccH-HHHccccCceeeccCccchhhcccc-ccccccc
Q 044062 18 LFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIKTLPE-SVNKLYNLHTLLLEDCDRLEKLCAD-MGNLTKL 94 (567)
Q Consensus 18 ~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L 94 (567)
+....+|+.+.+.. .++.+. .+|.+|.+|+.+.+..+ ++.++. +|..+ +|+.+.+-. .++.+... |.. .+|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT-CCC
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceecc-CCc
Confidence 44556677776653 355553 56777777777777643 555543 35554 455555543 34445444 333 367
Q ss_pred ceeeccCc
Q 044062 95 HHLNNSNT 102 (567)
Q Consensus 95 ~~L~l~~~ 102 (567)
+.+.+..+
T Consensus 116 ~~i~lp~~ 123 (379)
T 4h09_A 116 DDFEFPGA 123 (379)
T ss_dssp SEEECCTT
T ss_pred ccccCCCc
Confidence 77776554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.97 E-value=0.0075 Score=49.08 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=36.7
Q ss_pred EEEecCCCCC--ccccccccccccceeeccCCCcccccHH-HHccccCceeeccCc
Q 044062 26 VFSLRGYRIS--ELPDSVGDLRYLRHLNLSGTEIKTLPES-VNKLYNLHTLLLEDC 78 (567)
Q Consensus 26 ~L~L~~~~~~--~l~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~ 78 (567)
+++.++++++ .+|..+. .+|+.|+|++|.++.+|.. |..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 6677777777 7775544 3577888888888877544 677777888888776
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.80 E-value=0.0069 Score=49.28 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=37.8
Q ss_pred hhhhhhhccccceEEEecCCCCCccc-cccccccccceeeccCCCcc
Q 044062 13 SILPKLFKLQRLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIK 58 (567)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~l~ 58 (567)
.+|..++ .+|+.|+|++|+++.++ ..|..+++|+.|+|++|.+.
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5776665 47999999999999997 45799999999999999876
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.75 E-value=0.0089 Score=52.20 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=70.1
Q ss_pred hhccccceEEEecCC-CCC-----ccccccccccccceeeccCCCccc-----ccHHHHccccCceeeccCccchhh---
Q 044062 18 LFKLQRLRVFSLRGY-RIS-----ELPDSVGDLRYLRHLNLSGTEIKT-----LPESVNKLYNLHTLLLEDCDRLEK--- 83 (567)
Q Consensus 18 ~~~l~~L~~L~L~~~-~~~-----~l~~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~~~~--- 83 (567)
+..-+.|+.|+|+++ ++. .+-+++..-..|+.|+|++|.+.+ +.+.+..=+.|+.|+|++| .++.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 455578999999985 776 234566777889999999999873 3455666788999999998 4442
Q ss_pred --cccccccccccceeeccCcc--ccc-----cccccccccccccccCce
Q 044062 84 --LCADMGNLTKLHHLNNSNTY--SLE-----EMPVGIGKLTCLQTLSNF 124 (567)
Q Consensus 84 --l~~~~~~l~~L~~L~l~~~~--~~~-----~lp~~~~~l~~L~~L~~~ 124 (567)
+...+..=+.|++|+++++. .+. .+...+..=+.|+.|++.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 22233444679999998651 122 122234444567766553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.96 E-value=0.07 Score=46.52 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=53.0
Q ss_pred cccccccceeeccCC-Cccc-----ccHHHHccccCceeeccCccchhhc-----ccccccccccceeeccCccccc---
Q 044062 41 VGDLRYLRHLNLSGT-EIKT-----LPESVNKLYNLHTLLLEDCDRLEKL-----CADMGNLTKLHHLNNSNTYSLE--- 106 (567)
Q Consensus 41 ~~~l~~L~~L~L~~~-~l~~-----lp~~~~~l~~L~~L~L~~~~~~~~l-----~~~~~~l~~L~~L~l~~~~~~~--- 106 (567)
+.+-+.|+.|+|+++ .+.+ +.+.+..-..|+.|+|++| .+++- ...+..=+.|+.|+++.| .+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 355678999999875 6652 3455666678999999988 44432 122334478999999988 555
Q ss_pred --cccccccccccccccCce
Q 044062 107 --EMPVGIGKLTCLQTLSNF 124 (567)
Q Consensus 107 --~lp~~~~~l~~L~~L~~~ 124 (567)
.+...+..=+.|+.|++.
T Consensus 115 a~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECC
T ss_pred HHHHHHHHhhCCceeEEECC
Confidence 222334455567777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.13 E-value=91 Score=23.17 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=24.9
Q ss_pred CCCCCCCCcCeEEEccCCCccccccccCccccCCCCccEEEEcC
Q 044062 382 PLKPRIPKLEELEIKNIKNETYIWKSHNGLLQDICSLKRLTIDS 425 (567)
Q Consensus 382 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 425 (567)
..+.++.+|+.+.+-.. ++.+ ....| ..|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~--v~~I--g~~aF-~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN--IGLL--YDGMF-SGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT--SSCC--CTTSS-TTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc--hheE--cHHHH-hccCCccEEEEcC
Confidence 45667777777777542 4555 44455 6777777777765
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.07 E-value=58 Score=24.29 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=16.1
Q ss_pred cccccccccceeeccCCCcccc-cHHHHccccCceeecc
Q 044062 39 DSVGDLRYLRHLNLSGTEIKTL-PESVNKLYNLHTLLLE 76 (567)
Q Consensus 39 ~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~ 76 (567)
.+|..|.+|+.+.+..+ ++.+ ...|..+.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 44555555555555432 2222 1224444444444443
Done!