BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044064
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 110/187 (58%), Gaps = 14/187 (7%)
Query: 157 RLMCKIIDGLPPGVSK---LSQVFAGASLYYNYSQTEKCFMI-EDAADPHGLDGWRWQTC 212
+++C+ + P VS L +F ++YYNYS KC I E A G GW +Q C
Sbjct: 262 KVVCQYLKN--PNVSDSLLLQNIFQALNVYYNYSGQVKCLNISETATSSLGTLGWSYQAC 319
Query: 213 TEMVMPMTCSN--NSMFPPSGYDYKDFAEQCMMTYGVRPRIHWITTEFGGKRIELVLKRF 270
TE+VMP C+N + MF P ++ K+ ++ C +GVRPR WITT +GGK I
Sbjct: 320 TEVVMPF-CTNGVDDMFEPHSWNLKELSDDCFQQWGVRPRPSWITTMYGGKNISS----- 373
Query: 271 GSNIIFSNGMQDPWSRGGVLKNISASIIALVTKKGAHHVDFRSKTKDDPDWLVELRRQEV 330
+NI+FSNG DPWS GGV K+I+ +++A+ +GAHH+D R+K DP ++ R EV
Sbjct: 374 HTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNALDPMSVLLARSLEV 433
Query: 331 EIIQKWV 337
++ W+
Sbjct: 434 RHMKNWI 440
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 31/137 (22%)
Query: 53 YKTHYFPQVLDHFTFQP----------------------------KSDIECFAANTGFLL 84
Y YF Q +DHF F + DI F NTGF+
Sbjct: 3 YSVLYFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMW 62
Query: 85 DIAPKFNASLVFIEILWGINAI--WEDSYKSAETLGYLNSQQALADDAVLIRSLKQNL-S 141
D+A + A LVF E + ++ ++S+K + L +L S+QALAD A LI+ LK+ +
Sbjct: 63 DVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPG 122
Query: 142 SDSSPFVVFGGSYGGRL 158
+++ P + GGSYGG L
Sbjct: 123 AENQPVIAIGGSYGGML 139
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 99/185 (53%), Gaps = 16/185 (8%)
Query: 164 DGLPPGVSKLSQVFAGASLYYNYSQTEKCFMI----EDAADPHGLD------GWRWQTCT 213
D L +++ + A A L YN S +E C+ I ADP G W +Q CT
Sbjct: 271 DRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACT 330
Query: 214 EMVMPMTCSN-NSMFPPSGYDYKDFAEQCMMTYGVRPRIHWITTEFGGKRIELVLKRFGS 272
E+ + +N MFP + + C+ T+GV PR W+ T F G + R S
Sbjct: 331 EINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWLLTSFWGGDL-----RAAS 385
Query: 273 NIIFSNGMQDPWSRGGVLKNISASIIALVTKKGAHHVDFRSKTKDDPDWLVELRRQEVEI 332
NIIFSNG DPW+ GG+ +N+SAS+IA+ + GAHH+D R+ +DP +VE R+ E I
Sbjct: 386 NIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATI 445
Query: 333 IQKWV 337
I +WV
Sbjct: 446 IGEWV 450
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 31/137 (22%)
Query: 53 YKTHYFPQVLDHFTFQP------------------------------KSDIECFAANTGF 82
++ +F Q LDHF F+ + D+ FA N+ F
Sbjct: 8 FQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAF 67
Query: 83 LLDIAPKFNASLVFIE-ILWGINAIWEDSYKSAETLGYLNSQQALADDAVLIRSLKQNLS 141
+ ++A + A LVF E +G + + L +QALAD A L+R+L+++L
Sbjct: 68 VAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLG 127
Query: 142 SDSSPFVVFGGSYGGRL 158
+ +P + FGGSYGG L
Sbjct: 128 AQDAPAIAFGGSYGGML 144
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 98/185 (52%), Gaps = 16/185 (8%)
Query: 164 DGLPPGVSKLSQVFAGASLYYNYSQTEKCFMI----EDAADPHGLD------GWRWQTCT 213
D L +++ + A A L YN S +E C+ I ADP G W +Q CT
Sbjct: 268 DRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACT 327
Query: 214 EMVMPMTCSN-NSMFPPSGYDYKDFAEQCMMTYGVRPRIHWITTEFGGKRIELVLKRFGS 272
E+ + +N FP + + C+ T+GV PR W+ T F G + R S
Sbjct: 328 EINLTFASNNVTDXFPDLPFTDELRQRYCLDTWGVWPRPDWLLTSFWGGDL-----RAAS 382
Query: 273 NIIFSNGMQDPWSRGGVLKNISASIIALVTKKGAHHVDFRSKTKDDPDWLVELRRQEVEI 332
NIIFSNG DPW+ GG+ +N+SAS+IA+ + GAHH+D R+ +DP +VE R+ E I
Sbjct: 383 NIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATI 442
Query: 333 IQKWV 337
I +WV
Sbjct: 443 IGEWV 447
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 31/141 (21%)
Query: 49 PKLPYKTHYFPQVLDHFTFQP------------------------------KSDIECFAA 78
P ++ +F Q LDHF F+ + D+ FA
Sbjct: 1 PDPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFAN 60
Query: 79 NTGFLLDIAPKFNASLVFIE-ILWGINAIWEDSYKSAETLGYLNSQQALADDAVLIRSLK 137
N+ F+ ++A + A LVF E +G + + L +QALAD A L+R+L+
Sbjct: 61 NSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALR 120
Query: 138 QNLSSDSSPFVVFGGSYGGRL 158
++L + +P + FGGSYGG L
Sbjct: 121 RDLGAQDAPAIAFGGSYGGXL 141
>pdb|1Z8R|A Chain A, 2a Cysteine Proteinase From Human Coxsackievirus B4
(Strain Jvb BENSCHOTEN NEW YORK 51)
Length = 166
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 268 KRFGSNIIFSNGMQDPWSRGGVLKNISASIIALVTKKGAHHVDF 311
KR+ S+++ + G +P GG+L+ +I LVT G V F
Sbjct: 108 KRYQSHVLLATGFSEPGDAGGILR-CEHGVIGLVTMGGEGVVGF 150
>pdb|3K0B|A Chain A, Crystal Structure Of A Predicted N6-Adenine-Specific Dna
Methylase From Listeria Monocytogenes Str. 4b F2365
Length = 393
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 85 DIAPKFNASLVFIEILWGINAIWEDSYKSAETLGYLNSQQAL----AD-DAVLIRSLKQN 139
+IAP FN V W +W D+ + AE L N Q L D DA LI KQN
Sbjct: 225 NIAPGFNREFVSETWDWXPKQVWADARQEAEDLA--NYDQPLNIIGGDIDARLIEIAKQN 282
>pdb|1CBG|A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase
From White Clover (Trifolium Repens L.), A Family 1
Glycosyl-Hydrolase
Length = 490
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 233 DYKDFAEQCMMTYGVRPRIHWIT 255
D++D+AE C +G R + HWIT
Sbjct: 159 DFRDYAELCFKEFGDRVK-HWIT 180
>pdb|1F9O|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum With The Thiooligosaccharide Inhibitor
Pips- Ig3
pdb|1FAE|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiose
pdb|1FBO|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiitol
pdb|1G9G|A Chain A, Xtal-Structure Of The Free Native Cellulase Cel48f
pdb|1FCE|A Chain A, Processive Endocellulase Celf Of Clostridium
Cellulolyticum
Length = 629
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 301 VTKKGAHHVDFRSKTKDDPDW 321
V K G +D RSK K DP+W
Sbjct: 570 VIKSGVKFIDIRSKYKQDPEW 590
>pdb|1G9J|A Chain A, X-Tal Structure Of The Mutant E44q Of The Cellulase Cel48f
In Complex With A Thiooligosaccharide
Length = 629
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 301 VTKKGAHHVDFRSKTKDDPDW 321
V K G +D RSK K DP+W
Sbjct: 570 VIKSGVKFIDIRSKYKQDPEW 590
>pdb|1F9D|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellotetraose
pdb|1FBW|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellohexaose
pdb|2QNO|A Chain A, Crystal Structure Of The Mutant E55q Of The Cellulase
Cel48f In Complex With A Thio-Oligosaccharide
Length = 629
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 301 VTKKGAHHVDFRSKTKDDPDW 321
V K G +D RSK K DP+W
Sbjct: 570 VIKSGVKFIDIRSKYKQDPEW 590
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,177,401
Number of Sequences: 62578
Number of extensions: 411911
Number of successful extensions: 805
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 17
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)