Query 044065
Match_columns 81
No_of_seqs 27 out of 29
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 11:09:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10868 DUF2667: Protein of u 97.2 0.00042 9E-09 46.9 3.4 66 6-79 4-77 (90)
2 PF01097 Defensin_2: Arthropod 79.5 1.1 2.5E-05 25.3 1.2 27 51-80 7-34 (34)
3 PF09680 Tiny_TM_bacill: Prote 62.6 7.2 0.00016 21.0 1.8 15 9-23 6-20 (24)
4 cd00107 Knot1 The "knottin" fo 56.5 12 0.00026 20.0 2.1 26 53-80 7-33 (33)
5 PF11395 DUF2873: Protein of u 56.1 13 0.00029 22.3 2.4 18 7-24 12-29 (43)
6 PF12113 SVM_signal: SVM prote 55.7 9.9 0.00021 21.8 1.7 21 3-23 5-25 (33)
7 TIGR03042 PS_II_psbQ_bact phot 50.5 17 0.00036 26.2 2.6 23 6-29 2-24 (142)
8 PF07127 Nodulin_late: Late no 49.9 27 0.00058 20.6 3.0 12 1-13 1-12 (54)
9 PHA02291 hypothetical protein 48.9 17 0.00036 26.3 2.4 21 1-22 1-21 (132)
10 PF14865 Macin: Macin; PDB: 2K 46.5 15 0.00032 23.5 1.6 26 53-80 22-59 (59)
11 TIGR01781 Trep_dent_lipo Trepo 44.9 15 0.00033 30.8 1.8 20 1-20 1-20 (412)
12 PF12911 OppC_N: N-terminal TM 42.4 23 0.00051 20.1 1.9 17 3-19 14-30 (56)
13 PHA02680 ORF090 IMV phosphoryl 39.1 24 0.00053 24.2 1.9 18 6-23 48-65 (91)
14 PF07423 DUF1510: Protein of u 37.9 26 0.00057 26.6 2.1 19 5-23 12-30 (217)
15 PF04202 Mfp-3: Foot protein 3 37.3 23 0.0005 23.3 1.5 13 7-19 2-14 (71)
16 smart00505 Knot1 Knottins. Kno 37.0 36 0.00077 18.6 2.1 25 54-80 19-44 (45)
17 TIGR01732 tiny_TM_bacill conse 36.8 36 0.00078 18.6 2.0 14 9-22 8-21 (26)
18 PF05663 DUF809: Protein of un 36.7 31 0.00066 24.8 2.2 16 5-20 21-36 (138)
19 PF11812 DUF3333: Domain of un 36.2 30 0.00066 24.8 2.1 21 8-29 24-44 (155)
20 COG5567 Predicted small peripl 35.3 40 0.00087 21.5 2.3 18 7-24 3-20 (58)
21 PF10917 DUF2708: Protein of u 34.9 15 0.00032 22.3 0.3 15 6-20 1-15 (43)
22 PF08138 Sex_peptide: Sex pept 34.1 13 0.00029 23.5 0.0 17 6-22 1-17 (56)
23 COG4744 Uncharacterized conser 33.5 34 0.00073 24.6 1.9 14 7-20 33-46 (121)
24 PF07333 SLR1-BP: S locus-rela 31.8 34 0.00073 20.2 1.5 28 53-80 25-55 (58)
25 PRK14710 hypothetical protein; 31.4 36 0.00079 23.0 1.7 16 4-19 9-24 (86)
26 PF15102 TMEM154: TMEM154 prot 30.8 37 0.0008 24.8 1.8 15 7-21 61-75 (146)
27 PRK00059 prsA peptidylprolyl i 30.4 38 0.00083 25.4 1.9 20 6-25 5-24 (336)
28 TIGR02184 Myco_arth_vir_N Myco 30.1 38 0.00083 19.4 1.4 19 3-21 6-24 (33)
29 TIGR02747 TraV type IV conjuga 29.0 50 0.0011 23.9 2.2 30 14-44 9-39 (144)
30 PF00451 Toxin_2: Scorpion sho 27.7 36 0.00078 19.0 1.0 24 53-80 7-32 (32)
31 PF07438 DUF1514: Protein of u 27.5 61 0.0013 21.1 2.2 14 8-21 4-17 (66)
32 TIGR02209 ftsL_broad cell divi 27.2 64 0.0014 19.6 2.2 12 7-18 2-13 (85)
33 PRK11060 rod shape-determining 26.6 62 0.0013 23.3 2.4 22 1-22 1-25 (162)
34 COG4808 Uncharacterized protei 25.7 56 0.0012 24.3 2.0 21 6-26 5-25 (152)
35 PF02950 Conotoxin: Conotoxin; 25.1 24 0.00052 21.1 0.0 14 7-20 2-15 (75)
36 PHA02909 hypothetical protein; 25.0 68 0.0015 21.0 2.1 13 8-20 35-47 (72)
37 cd00053 EGF Epidermal growth f 24.9 57 0.0012 15.5 1.4 16 65-80 11-26 (36)
38 PF12606 RELT: Tumour necrosis 24.4 80 0.0017 19.2 2.2 12 8-19 6-17 (50)
39 PRK10523 lipoprotein involved 24.0 73 0.0016 24.6 2.4 22 7-28 4-25 (234)
40 PF15284 PAGK: Phage-encoded v 23.5 75 0.0016 20.4 2.0 14 7-20 3-16 (61)
41 PF07403 DUF1505: Protein of u 23.2 79 0.0017 22.3 2.3 10 12-21 4-13 (114)
42 PF09125 COX2-transmemb: Cytoc 23.0 1E+02 0.0022 18.2 2.4 15 7-21 15-29 (38)
43 PF13124 DUF3963: Protein of u 22.8 82 0.0018 18.7 2.0 15 7-21 23-37 (40)
44 PF08194 DIM: DIM protein; In 22.6 61 0.0013 18.8 1.4 13 6-18 1-13 (36)
45 PHA03055 Hypothetical protein; 22.2 1E+02 0.0022 20.6 2.6 22 1-23 1-22 (79)
46 PLN03207 stomagen; Provisional 21.7 1.1E+02 0.0024 21.7 2.8 23 6-28 11-33 (113)
47 PF12173 BacteriocIIc_cy: Bact 21.0 93 0.002 21.4 2.2 17 6-22 12-28 (91)
48 smart00272 END Endothelin. 20.8 57 0.0012 17.7 0.9 9 53-61 10-18 (26)
49 PHA03164 hypothetical protein; 20.3 56 0.0012 22.3 1.0 19 4-22 53-71 (88)
No 1
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=97.20 E-value=0.00042 Score=46.94 Aligned_cols=66 Identities=30% Similarity=0.573 Sum_probs=45.0
Q ss_pred chhhHHHHHHHHHHHhhh--hcccCCCcccCCCCCcccCCCCCCCCCCCccchHHHhhcC---CCccceeCCC---Ccce
Q 044065 6 TKVFSFIILAVLLLTIIN--CNEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTEC---KGCICKPVKS---EHHC 77 (81)
Q Consensus 6 ~~v~sf~l~~vl~ls~~~--c~~~~~~~CC~~hp~~G~C~~~~DD~~n~~kCn~wC~~~C---kGG~CK~~~~---~h~C 77 (81)
+||.+|||++|+.|||+. =.+++..+.|. --+|.|.+. + ++||++|.+-. .||+|.+.+. ...|
T Consensus 4 lk~st~~ilvvvclsiLLisp~eV~G~~~cd--~~~G~C~~~--~----~~C~~~Ck~~~~~y~GG~C~~~~~~~~~~~C 75 (90)
T PF10868_consen 4 LKLSTFVILVVVCLSILLISPTEVDGRLKCD--SPFGACTPF--S----SDCNEPCKKFGSNYYGGQCVPVGPPPGDGVC 75 (90)
T ss_pred eEEEeeehhHHHHHHHHccccceeCCeEccC--cccccCCch--H----HHHHHHHHhhccCCCCceeccCCCCCCCcEE
Confidence 577777777777666442 12223344564 379999997 3 69999999877 7999998755 3455
Q ss_pred ee
Q 044065 78 HC 79 (81)
Q Consensus 78 HC 79 (81)
-|
T Consensus 76 ~C 77 (90)
T PF10868_consen 76 YC 77 (90)
T ss_pred EE
Confidence 44
No 2
>PF01097 Defensin_2: Arthropod defensin; InterPro: IPR001542 Arthropod defensins are a family of insect and scorpion cysteine-rich antibacterial peptides, primarily active against Gram-positive bacteria [, , , , ]. All these peptides range in length from 38 to 51 amino acids. There are six conserved cysteines all involved in intrachain disulphide bonds. A schematic representation of peptides from the arthropod defensin family is shown below. +----------------------------+ | | xxCxxxxxxxxxxxxxxCxxxCxxxxxxxxxCxxxxxCxCxx | | | | +---|---------------+ | +-----------------+ 'C': conserved cysteine involved in a disulphide bond. Although low level sequence similarities have been reported [] between the arthropod defensins and mammalian defensins, the topological arrangement of the disulphide bonds as well as the tertiary structure [] are completely different in the two families.; GO: 0006952 defense response; PDB: 1FJN_A 1ICA_A 1L4V_A 2LLD_A 3E7R_L 3E7U_X 1ZFU_A 2B68_A 2NZ3_A 2NY8_X ....
Probab=79.48 E-value=1.1 Score=25.30 Aligned_cols=27 Identities=26% Similarity=0.662 Sum_probs=22.2
Q ss_pred CCccchHHHhh-cCCCccceeCCCCcceeec
Q 044065 51 NTGKCWKYCTT-ECKGCICKPVKSEHHCHCM 80 (81)
Q Consensus 51 n~~kCn~wC~~-~CkGG~CK~~~~~h~CHCy 80 (81)
|+..|..-|++ +-+||+|.. +.+|.||
T Consensus 7 n~~~C~~hC~~~g~~GGyC~~---~~vC~Cr 34 (34)
T PF01097_consen 7 NHSACAAHCLSIGYRGGYCNG---KGVCVCR 34 (34)
T ss_dssp TCHHHHHHHHHHTCSEEEEET---TSCEEEE
T ss_pred CHHHHHHHHHHhCCcceeCCC---CCEEEeC
Confidence 44689999976 559999996 8899997
No 3
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=62.57 E-value=7.2 Score=21.03 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHhhh
Q 044065 9 FSFIILAVLLLTIIN 23 (81)
Q Consensus 9 ~sf~l~~vl~ls~~~ 23 (81)
|+++++++++|.|+.
T Consensus 6 FalivVLFILLiIvG 20 (24)
T PF09680_consen 6 FALIVVLFILLIIVG 20 (24)
T ss_pred chhHHHHHHHHHHhc
Confidence 444444555554544
No 4
>cd00107 Knot1 The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments. Members include plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins.
Probab=56.45 E-value=12 Score=19.99 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=17.0
Q ss_pred ccchHHHhhc-CCCccceeCCCCcceeec
Q 044065 53 GKCWKYCTTE-CKGCICKPVKSEHHCHCM 80 (81)
Q Consensus 53 ~kCn~wC~~~-CkGG~CK~~~~~h~CHCy 80 (81)
..|++.|.+. =++|+|... +..|.|+
T Consensus 7 ~~C~~~Ck~~g~~~G~C~~~--~~~C~C~ 33 (33)
T cd00107 7 SYCDKECKKKGASGGYCYGQ--GLACWCY 33 (33)
T ss_pred hhHHHHHhHcCCCccEeCCC--CCeEEeC
Confidence 3677777763 378999753 3457664
No 5
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=56.11 E-value=13 Score=22.29 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHhhhh
Q 044065 7 KVFSFIILAVLLLTIINC 24 (81)
Q Consensus 7 ~v~sf~l~~vl~ls~~~c 24 (81)
-|.||.|++|++..||-|
T Consensus 12 c~l~~llflv~imliif~ 29 (43)
T PF11395_consen 12 CFLSFLLFLVIIMLIIFW 29 (43)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367888888886666655
No 6
>PF12113 SVM_signal: SVM protein signal sequence; InterPro: IPR021970 This domain is presumed to be a signal peptide sequence found in Sequence-variable mosaic (SVM) proteins []. It is found in phytoplasmas. This presumed signal sequence is about 30 amino acids in length.
Probab=55.69 E-value=9.9 Score=21.79 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.3
Q ss_pred cccchhhHHHHHHHHHHHhhh
Q 044065 3 QSQTKVFSFIILAVLLLTIIN 23 (81)
Q Consensus 3 ~~~~~v~sf~l~~vl~ls~~~ 23 (81)
++|.++++++|+..|=|.+|.
T Consensus 5 knq~~ii~i~Lf~~LGL~fI~ 25 (33)
T PF12113_consen 5 KNQFKIINIFLFIFLGLFFIT 25 (33)
T ss_pred hhchhhhhhHHHHHHHHHhee
Confidence 578999999999999776653
No 7
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=50.55 E-value=17 Score=26.24 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=17.4
Q ss_pred chhhHHHHHHHHHHHhhhhcccCC
Q 044065 6 TKVFSFIILAVLLLTIINCNEVSA 29 (81)
Q Consensus 6 ~~v~sf~l~~vl~ls~~~c~~~~~ 29 (81)
.+++||+|+++++| |..|-+..+
T Consensus 2 r~~~s~~Lv~~~~~-Lvsc~~p~~ 24 (142)
T TIGR03042 2 RSLASLLLVLLLTF-LVSCSGPAA 24 (142)
T ss_pred hhHHHHHHHHHHHH-HHHcCCCcc
Confidence 57899999998888 666755443
No 8
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=49.88 E-value=27 Score=20.57 Aligned_cols=12 Identities=33% Similarity=0.301 Sum_probs=7.0
Q ss_pred CCcccchhhHHHH
Q 044065 1 MAQSQTKVFSFII 13 (81)
Q Consensus 1 ma~~~~~v~sf~l 13 (81)
||+- .|++...+
T Consensus 1 Ma~i-lKFvY~mI 12 (54)
T PF07127_consen 1 MAKI-LKFVYAMI 12 (54)
T ss_pred Cccc-hhhHHHHH
Confidence 7777 66555443
No 9
>PHA02291 hypothetical protein
Probab=48.91 E-value=17 Score=26.29 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=15.5
Q ss_pred CCcccchhhHHHHHHHHHHHhh
Q 044065 1 MAQSQTKVFSFIILAVLLLTII 22 (81)
Q Consensus 1 ma~~~~~v~sf~l~~vl~ls~~ 22 (81)
|.++ ..+|.+.+++||+++|.
T Consensus 1 MS~K-~~iFYiL~~~VL~~si~ 21 (132)
T PHA02291 1 MSRK-ASIFYILVVIVLAFSIS 21 (132)
T ss_pred CCcc-hhhHHHHHHHHHHHHHH
Confidence 4444 77888888889888763
No 10
>PF14865 Macin: Macin; PDB: 2K35_A 2LN8_A.
Probab=46.52 E-value=15 Score=23.47 Aligned_cols=26 Identities=27% Similarity=0.788 Sum_probs=16.3
Q ss_pred ccchHHHhhcC---CCccceeCC---------CCcceeec
Q 044065 53 GKCWKYCTTEC---KGCICKPVK---------SEHHCHCM 80 (81)
Q Consensus 53 ~kCn~wC~~~C---kGG~CK~~~---------~~h~CHCy 80 (81)
..|+.+|. | .||.|.+.. ..-+|+||
T Consensus 22 ~sC~~~Ck--c~G~~gG~C~~~pS~C~l~~~~~~~qC~C~ 59 (59)
T PF14865_consen 22 KSCNDRCK--CLGHDGGECVLSPSNCPLSRLDKAWQCQCY 59 (59)
T ss_dssp -CCHHHHH--TTT-SEEEEEE-CCG-S-TT-TT-EEEEEE
T ss_pred hHhhHHHH--HcCCCCCceEeCCCCCcccccccceeeeeC
Confidence 46777777 5 889987542 33478886
No 11
>TIGR01781 Trep_dent_lipo Treponema denticola clustered lipoprotein. This model represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome. Two other neighboring genes share the lipoprotein signal peptide region but do not show more extensive homology. The function of this locus is unknown.
Probab=44.91 E-value=15 Score=30.78 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=17.4
Q ss_pred CCcccchhhHHHHHHHHHHH
Q 044065 1 MAQSQTKVFSFIILAVLLLT 20 (81)
Q Consensus 1 ma~~~~~v~sf~l~~vl~ls 20 (81)
|-+.++|++-+.+||||+||
T Consensus 1 mkkdklklifil~la~llfs 20 (412)
T TIGR01781 1 MKKDKLKLIFILMLAVLLFS 20 (412)
T ss_pred CCccceeehHHHHHHHHHhh
Confidence 67778999999999999996
No 12
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=42.36 E-value=23 Score=20.09 Aligned_cols=17 Identities=35% Similarity=0.641 Sum_probs=11.4
Q ss_pred cccchhhHHHHHHHHHH
Q 044065 3 QSQTKVFSFIILAVLLL 19 (81)
Q Consensus 3 ~~~~~v~sf~l~~vl~l 19 (81)
++++-++++++++++++
T Consensus 14 ~nk~a~~gl~il~~~vl 30 (56)
T PF12911_consen 14 RNKLAVIGLIILLILVL 30 (56)
T ss_pred hCchHHHHHHHHHHHHH
Confidence 35567777777776655
No 13
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=39.11 E-value=24 Score=24.21 Aligned_cols=18 Identities=44% Similarity=0.521 Sum_probs=14.4
Q ss_pred chhhHHHHHHHHHHHhhh
Q 044065 6 TKVFSFIILAVLLLTIIN 23 (81)
Q Consensus 6 ~~v~sf~l~~vl~ls~~~ 23 (81)
..+++|+|-+|++|.+.+
T Consensus 48 lSii~FIlG~vl~lGili 65 (91)
T PHA02680 48 LSVTCFIVGAVLLLGLFV 65 (91)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457899999999998654
No 14
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=37.88 E-value=26 Score=26.62 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=11.7
Q ss_pred cchhhHHHHHHHHHHHhhh
Q 044065 5 QTKVFSFIILAVLLLTIIN 23 (81)
Q Consensus 5 ~~~v~sf~l~~vl~ls~~~ 23 (81)
+.+|+=++|.+|++|-|++
T Consensus 12 ~N~iLNiaI~IV~lLIiiv 30 (217)
T PF07423_consen 12 TNKILNIAIGIVSLLIIIV 30 (217)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3566667777777665443
No 15
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=37.30 E-value=23 Score=23.35 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHH
Q 044065 7 KVFSFIILAVLLL 19 (81)
Q Consensus 7 ~v~sf~l~~vl~l 19 (81)
+-+|++.|++|||
T Consensus 2 nn~Si~VLlaLvL 14 (71)
T PF04202_consen 2 NNLSIAVLLALVL 14 (71)
T ss_pred CchhHHHHHHHHH
Confidence 4467777777777
No 16
>smart00505 Knot1 Knottins. Knottins, representing plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins and arthropod defensins.
Probab=37.03 E-value=36 Score=18.64 Aligned_cols=25 Identities=32% Similarity=0.878 Sum_probs=16.4
Q ss_pred cchHHHhhc-CCCccceeCCCCcceeec
Q 044065 54 KCWKYCTTE-CKGCICKPVKSEHHCHCM 80 (81)
Q Consensus 54 kCn~wC~~~-CkGG~CK~~~~~h~CHCy 80 (81)
.|++.|.+. =+||+|+.. +..|.|+
T Consensus 19 ~C~~~C~~~g~~~G~C~~~--~~~C~C~ 44 (45)
T smart00505 19 LCAKLCKKKGAKGGYCRGT--TRRCFCY 44 (45)
T ss_pred HhHHHhhhcCCCCCCcCCc--CCceEee
Confidence 577777663 368999753 3467775
No 17
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=36.85 E-value=36 Score=18.61 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHhh
Q 044065 9 FSFIILAVLLLTII 22 (81)
Q Consensus 9 ~sf~l~~vl~ls~~ 22 (81)
|++++++.++|-|+
T Consensus 8 f~livVLFILLIIi 21 (26)
T TIGR01732 8 FALIVVLFILLVIV 21 (26)
T ss_pred hHHHHHHHHHHHHh
Confidence 34444444455443
No 18
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=36.66 E-value=31 Score=24.84 Aligned_cols=16 Identities=44% Similarity=0.744 Sum_probs=12.5
Q ss_pred cchhhHHHHHHHHHHH
Q 044065 5 QTKVFSFIILAVLLLT 20 (81)
Q Consensus 5 ~~~v~sf~l~~vl~ls 20 (81)
+..|+||+|++-|+..
T Consensus 21 kvsvisffllayllma 36 (138)
T PF05663_consen 21 KVSVISFFLLAYLLMA 36 (138)
T ss_pred eeehHHHHHHHHHHHH
Confidence 4679999999977653
No 19
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=36.19 E-value=30 Score=24.84 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHhhhhcccCC
Q 044065 8 VFSFIILAVLLLTIINCNEVSA 29 (81)
Q Consensus 8 v~sf~l~~vl~ls~~~c~~~~~ 29 (81)
+++++++++|+.||+. .||.+
T Consensus 24 ~~~l~fL~~ll~sI~~-~G~~A 44 (155)
T PF11812_consen 24 AIALAFLVILLFSIVS-KGYPA 44 (155)
T ss_pred HHHHHHHHHHHHHHHh-cchhh
Confidence 4666777777777775 66654
No 20
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=35.35 E-value=40 Score=21.48 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHhhhh
Q 044065 7 KVFSFIILAVLLLTIINC 24 (81)
Q Consensus 7 ~v~sf~l~~vl~ls~~~c 24 (81)
++|+-.+++++++||..|
T Consensus 3 ~~~~s~~ala~l~sLA~C 20 (58)
T COG5567 3 NVFKSLLALATLFSLAGC 20 (58)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 455555556666688776
No 21
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=34.95 E-value=15 Score=22.26 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=10.6
Q ss_pred chhhHHHHHHHHHHH
Q 044065 6 TKVFSFIILAVLLLT 20 (81)
Q Consensus 6 ~~v~sf~l~~vl~ls 20 (81)
|.|.|.++|++|.+|
T Consensus 1 MN~YsvfvFaiLais 15 (43)
T PF10917_consen 1 MNVYSVFVFAILAIS 15 (43)
T ss_pred CceeeehHHHHhhhh
Confidence 456777777777764
No 22
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=34.10 E-value=13 Score=23.50 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhh
Q 044065 6 TKVFSFIILAVLLLTII 22 (81)
Q Consensus 6 ~~v~sf~l~~vl~ls~~ 22 (81)
||+.+|+|++++++.+.
T Consensus 1 Mk~p~~llllvlllGla 17 (56)
T PF08138_consen 1 MKTPIFLLLLVLLLGLA 17 (56)
T ss_dssp -----------------
T ss_pred CcchHHHHHHHHHHHHH
Confidence 56777778777777653
No 23
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=33.52 E-value=34 Score=24.57 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHH
Q 044065 7 KVFSFIILAVLLLT 20 (81)
Q Consensus 7 ~v~sf~l~~vl~ls 20 (81)
-|||.+|+++|++|
T Consensus 33 mVfsva~LI~lv~S 46 (121)
T COG4744 33 MVFSVALLIALVMS 46 (121)
T ss_pred HHHHHHHHHHHHHh
Confidence 46777777777776
No 24
>PF07333 SLR1-BP: S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP); InterPro: IPR010851 This entry consists of a number of cysteine rich SLR1 binding pollen coat like proteins. Adhesion of pollen grains to the stigmatic surface is a critical step during sexual reproduction in plants. In Brassica, S locus-related glycoprotein 1 (SLR1), a stigma-specific protein belonging to the S gene family of proteins, has been shown to be involved in this step. SLR1-BP specifically binds SLR1 with high affinity. The SLR1-BP gene is specifically expressed in pollen at late stages of development and is a member of the class A pollen coat protein (PCP) family, which includes PCP-A1, an SLG (S locus glycoprotein)-binding protein []. This entry also includes defensin-like proteins. The function of these proteins is uncharacterised.
Probab=31.82 E-value=34 Score=20.17 Aligned_cols=28 Identities=29% Similarity=0.778 Sum_probs=17.9
Q ss_pred ccchHHHhhcC-CC-cccee-CCCCcceeec
Q 044065 53 GKCWKYCTTEC-KG-CICKP-VKSEHHCHCM 80 (81)
Q Consensus 53 ~kCn~wC~~~C-kG-G~CK~-~~~~h~CHCy 80 (81)
+.|...|...= .+ |.|.+ ..+...|.|+
T Consensus 25 ~~C~~~C~~k~~g~~G~C~~~~~~~~~C~C~ 55 (58)
T PF07333_consen 25 QDCRSLCKKKYKGGVGTCIPKPKGPKQCLCT 55 (58)
T ss_pred HHHHHHHHHHcCCCceEeccCCCCCCeeEEE
Confidence 35555555444 34 78998 5667788884
No 25
>PRK14710 hypothetical protein; Provisional
Probab=31.42 E-value=36 Score=22.98 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=13.2
Q ss_pred ccchhhHHHHHHHHHH
Q 044065 4 SQTKVFSFIILAVLLL 19 (81)
Q Consensus 4 ~~~~v~sf~l~~vl~l 19 (81)
|+|.+|-|+++++++|
T Consensus 9 skm~ififaiii~v~l 24 (86)
T PRK14710 9 SKMIIFIFAIIIIVVL 24 (86)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4588889998888887
No 26
>PF15102 TMEM154: TMEM154 protein family
Probab=30.82 E-value=37 Score=24.79 Aligned_cols=15 Identities=27% Similarity=0.700 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHh
Q 044065 7 KVFSFIILAVLLLTI 21 (81)
Q Consensus 7 ~v~sf~l~~vl~ls~ 21 (81)
.++..|||++|+|++
T Consensus 61 IlIP~VLLvlLLl~v 75 (146)
T PF15102_consen 61 ILIPLVLLVLLLLSV 75 (146)
T ss_pred EeHHHHHHHHHHHHH
Confidence 455656666666654
No 27
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=30.41 E-value=38 Score=25.38 Aligned_cols=20 Identities=20% Similarity=0.685 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHHHhhhhc
Q 044065 6 TKVFSFIILAVLLLTIINCN 25 (81)
Q Consensus 6 ~~v~sf~l~~vl~ls~~~c~ 25 (81)
.|+++++|+.+|+|++..|.
T Consensus 5 ~~~~~~~~~~~l~~~~~gc~ 24 (336)
T PRK00059 5 KKLVASLLVGVFIFSAVGCN 24 (336)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 67888888888888876664
No 28
>TIGR02184 Myco_arth_vir_N Mycoplasma virulence family signal region. This model represents the N-terminal region, including a probable signal sequence or signal anchor which in most instances has four consecutive Lys residues before the hydrophobic stretch, of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum.
Probab=30.08 E-value=38 Score=19.40 Aligned_cols=19 Identities=21% Similarity=0.537 Sum_probs=15.0
Q ss_pred cccchhhHHHHHHHHHHHh
Q 044065 3 QSQTKVFSFIILAVLLLTI 21 (81)
Q Consensus 3 ~~~~~v~sf~l~~vl~ls~ 21 (81)
+++.++.-|+|++.|+-|+
T Consensus 6 KKKnkIl~~al~a~l~~S~ 24 (33)
T TIGR02184 6 KKKNKIATLVIVTSLLTSL 24 (33)
T ss_pred hhhhheehHHHHHHHHHhh
Confidence 4568899999999887764
No 29
>TIGR02747 TraV type IV conjugative transfer system lipoprotein TraV. The TraV protein is a component of conjugative type IV secretion systems. TraV is an outer membrane lipoprotein and is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.
Probab=29.03 E-value=50 Score=23.95 Aligned_cols=30 Identities=17% Similarity=0.534 Sum_probs=18.4
Q ss_pred HHHHHHHhhhh-cccCCCcccCCCCCcccCCC
Q 044065 14 LAVLLLTIINC-NEVSASKCCRNHPQLGNCVK 44 (81)
Q Consensus 14 ~~vl~ls~~~c-~~~~~~~CC~~hp~~G~C~~ 44 (81)
+++.+| |-.| ++.+..-=|+.--+||.|.+
T Consensus 9 ~~~~al-LtGCsag~~~~f~C~~~~~~~~C~t 39 (144)
T TIGR02747 9 IACVAF-LTGCSAGCNSNFSCEGTGGWGTCAT 39 (144)
T ss_pred HHHHHH-hhcccCCCCCCccccCCCCCCcccc
Confidence 333444 6678 66665555666667777766
No 30
>PF00451 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IPR001947 Scorpion venoms contain a variety of peptides toxic to mammals, insects and crustaceans. Among these peptides there is a family of short toxins (30 to 40 residues) [, ] including charybdotoxin, kaliotoxin [], noxiustoxin [] and iberiotoxin [, ]. Charybdotoxin consists of a single polypeptide chain and is a potent, selective inhibitor of calcium-activated potassium channels in pituitary and aortic smooth muscle cells - the toxin reversibly blocks channel activity by interacting at the external pore of the channel protein[]. The tertiary structure of the toxins comprises a 3-stranded beta-sheet and a short helix, and is stabilised by a number of disulphide bridges [] as shown in the following schematic representation: +---------------------+ | | | | xxxxxxxCxxxxxCxxxCxxxxxxxxxxxCxxxxCxCxxx | | | | | +----------------+ | +----------------------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TSK_A 2PTA_A 1BIG_A 3ODV_A 2UVS_A 2KTX_A 1XSW_A 1KTX_A 1WMT_A 1PNH_A ....
Probab=27.71 E-value=36 Score=18.97 Aligned_cols=24 Identities=29% Similarity=1.005 Sum_probs=17.1
Q ss_pred ccchHHHhhc--CCCccceeCCCCcceeec
Q 044065 53 GKCWKYCTTE--CKGCICKPVKSEHHCHCM 80 (81)
Q Consensus 53 ~kCn~wC~~~--CkGG~CK~~~~~h~CHCy 80 (81)
.+||.-|... +.-|-|- ...|+||
T Consensus 7 ~~C~~~Ck~~~g~~~gKCm----N~kC~Cy 32 (32)
T PF00451_consen 7 KDCWPPCKKATGCLNGKCM----NGKCKCY 32 (32)
T ss_dssp HHHHHHHHHHTSSSEEEEE----TTEEEEE
T ss_pred hHHHHHhhhhhCCCCCCcc----CCCceeC
Confidence 3688888765 6667666 6678887
No 31
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=27.53 E-value=61 Score=21.11 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHh
Q 044065 8 VFSFIILAVLLLTI 21 (81)
Q Consensus 8 v~sf~l~~vl~ls~ 21 (81)
++|++|.++|+.+|
T Consensus 4 iiSIvLai~lLI~l 17 (66)
T PF07438_consen 4 IISIVLAIALLISL 17 (66)
T ss_pred hHHHHHHHHHHHHH
Confidence 56777777777765
No 32
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=27.22 E-value=64 Score=19.56 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=5.1
Q ss_pred hhhHHHHHHHHH
Q 044065 7 KVFSFIILAVLL 18 (81)
Q Consensus 7 ~v~sf~l~~vl~ 18 (81)
+.+.++|+++++
T Consensus 2 ~~l~~~l~~~v~ 13 (85)
T TIGR02209 2 KKLYVLLLLAIL 13 (85)
T ss_pred chHHHHHHHHHH
Confidence 334444444443
No 33
>PRK11060 rod shape-determining protein MreD; Provisional
Probab=26.58 E-value=62 Score=23.30 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=14.8
Q ss_pred CCcccch---hhHHHHHHHHHHHhh
Q 044065 1 MAQSQTK---VFSFIILAVLLLTII 22 (81)
Q Consensus 1 ma~~~~~---v~sf~l~~vl~ls~~ 22 (81)
||+++.+ ++.+-++++++|+++
T Consensus 1 ~~~~~~~~~~~I~ls~~vAl~L~i~ 25 (162)
T PRK11060 1 MASYRSRGRWVIWLSFLIALVLQIM 25 (162)
T ss_pred CCccccCccHHHHHHHHHHHHHHhC
Confidence 7777554 666667777777664
No 34
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.72 E-value=56 Score=24.27 Aligned_cols=21 Identities=29% Similarity=0.797 Sum_probs=16.5
Q ss_pred chhhHHHHHHHHHHHhhhhcc
Q 044065 6 TKVFSFIILAVLLLTIINCNE 26 (81)
Q Consensus 6 ~~v~sf~l~~vl~ls~~~c~~ 26 (81)
.+.+|.+++++|++||..|-+
T Consensus 5 ~kl~~~~~alil~~sl~gCgd 25 (152)
T COG4808 5 NKLFSLVVALVLVFSLAGCGD 25 (152)
T ss_pred HHHHHHHHHHHHHHHhhhcCc
Confidence 467888888889998877743
No 35
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=25.10 E-value=24 Score=21.14 Aligned_cols=14 Identities=57% Similarity=0.759 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHH
Q 044065 7 KVFSFIILAVLLLT 20 (81)
Q Consensus 7 ~v~sf~l~~vl~ls 20 (81)
|+-..+|+|||+|+
T Consensus 2 KLt~vliVavLllt 15 (75)
T PF02950_consen 2 KLTCVLIVAVLLLT 15 (75)
T ss_dssp --------------
T ss_pred CcchHHHHHHHHHH
Confidence 33334455555554
No 36
>PHA02909 hypothetical protein; Provisional
Probab=25.04 E-value=68 Score=20.96 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHH
Q 044065 8 VFSFIILAVLLLT 20 (81)
Q Consensus 8 v~sf~l~~vl~ls 20 (81)
.+||+|+.++.||
T Consensus 35 mvsfilfviifls 47 (72)
T PHA02909 35 MVSFILFVIIFLS 47 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 4677777766554
No 37
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=24.85 E-value=57 Score=15.48 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=10.4
Q ss_pred CccceeCCCCcceeec
Q 044065 65 GCICKPVKSEHHCHCM 80 (81)
Q Consensus 65 GG~CK~~~~~h~CHCy 80 (81)
++.|....+...|+|.
T Consensus 11 ~~~C~~~~~~~~C~C~ 26 (36)
T cd00053 11 GGTCVNTPGSYRCVCP 26 (36)
T ss_pred CCEEecCCCCeEeECC
Confidence 4667766666777763
No 38
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=24.40 E-value=80 Score=19.18 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHH
Q 044065 8 VFSFIILAVLLL 19 (81)
Q Consensus 8 v~sf~l~~vl~l 19 (81)
++|++++++|+.
T Consensus 6 iV~i~iv~~lLg 17 (50)
T PF12606_consen 6 IVSIFIVMGLLG 17 (50)
T ss_pred HHHHHHHHHHHH
Confidence 456666555443
No 39
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=24.02 E-value=73 Score=24.59 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHhhhhcccC
Q 044065 7 KVFSFIILAVLLLTIINCNEVS 28 (81)
Q Consensus 7 ~v~sf~l~~vl~ls~~~c~~~~ 28 (81)
|..-++|+++.+|+|+.|.+..
T Consensus 4 k~~~~~~~a~~l~~l~gC~~~~ 25 (234)
T PRK10523 4 KAIITALAAAGLFTLMGCNNRA 25 (234)
T ss_pred HHHHHHHHHHHHHHhhccCCcc
Confidence 4455666777788888875543
No 40
>PF15284 PAGK: Phage-encoded virulence factor
Probab=23.45 E-value=75 Score=20.36 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHH
Q 044065 7 KVFSFIILAVLLLT 20 (81)
Q Consensus 7 ~v~sf~l~~vl~ls 20 (81)
+|=|++|+++|+||
T Consensus 3 k~ksifL~l~~~Ls 16 (61)
T PF15284_consen 3 KFKSIFLALVFILS 16 (61)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666554
No 41
>PF07403 DUF1505: Protein of unknown function (DUF1505); InterPro: IPR009981 This family consists of several uncharacterised Caenorhabditis elegans proteins of around 115 resides in length. Members of this family contain 6 highly conserved cysteine residues. The function of this family is unknown.
Probab=23.20 E-value=79 Score=22.29 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=4.8
Q ss_pred HHHHHHHHHh
Q 044065 12 IILAVLLLTI 21 (81)
Q Consensus 12 ~l~~vl~ls~ 21 (81)
+++.||+|||
T Consensus 4 ~~~~vl~lsv 13 (114)
T PF07403_consen 4 FPSTVLLLSV 13 (114)
T ss_pred hhhhHHHHHH
Confidence 3444555553
No 42
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=23.01 E-value=1e+02 Score=18.22 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHHh
Q 044065 7 KVFSFIILAVLLLTI 21 (81)
Q Consensus 7 ~v~sf~l~~vl~ls~ 21 (81)
...-|.|+++++|.+
T Consensus 15 ~Wi~F~l~mi~vFi~ 29 (38)
T PF09125_consen 15 GWIAFALAMILVFIA 29 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 455667777776653
No 43
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=22.77 E-value=82 Score=18.73 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHh
Q 044065 7 KVFSFIILAVLLLTI 21 (81)
Q Consensus 7 ~v~sf~l~~vl~ls~ 21 (81)
--|.|+|+.|.+.||
T Consensus 23 it~cfal~vv~lvsl 37 (40)
T PF13124_consen 23 ITFCFALLVVVLVSL 37 (40)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346788887777665
No 44
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=22.62 E-value=61 Score=18.77 Aligned_cols=13 Identities=31% Similarity=0.421 Sum_probs=6.9
Q ss_pred chhhHHHHHHHHH
Q 044065 6 TKVFSFIILAVLL 18 (81)
Q Consensus 6 ~~v~sf~l~~vl~ 18 (81)
||.+|+++++.|+
T Consensus 1 Mk~l~~a~~l~lL 13 (36)
T PF08194_consen 1 MKCLSLAFALLLL 13 (36)
T ss_pred CceeHHHHHHHHH
Confidence 5666664444433
No 45
>PHA03055 Hypothetical protein; Provisional
Probab=22.19 E-value=1e+02 Score=20.62 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=16.8
Q ss_pred CCcccchhhHHHHHHHHHHHhhh
Q 044065 1 MAQSQTKVFSFIILAVLLLTIIN 23 (81)
Q Consensus 1 ma~~~~~v~sf~l~~vl~ls~~~ 23 (81)
||.. .+++|++=+.+|++.+++
T Consensus 1 Ma~~-~~~~~~Ig~TlL~llMii 22 (79)
T PHA03055 1 MADA-ITVLTAIGITVLMLLMVI 22 (79)
T ss_pred CCcc-hhHHHHHHHHHHHHHHHH
Confidence 7888 888888877777776544
No 46
>PLN03207 stomagen; Provisional
Probab=21.73 E-value=1.1e+02 Score=21.70 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=14.7
Q ss_pred chhhHHHHHHHHHHHhhhhcccC
Q 044065 6 TKVFSFIILAVLLLTIINCNEVS 28 (81)
Q Consensus 6 ~~v~sf~l~~vl~ls~~~c~~~~ 28 (81)
.-.+-|+||..|+|.--++.++-
T Consensus 11 ~~~~lffLl~~llla~~v~qgsr 33 (113)
T PLN03207 11 RCLTLFFLLFFLLLGAYVIQGSR 33 (113)
T ss_pred hhHHHHHHHHHHHHHHHHHhccc
Confidence 45566777777777766665543
No 47
>PF12173 BacteriocIIc_cy: Bacteriocin class IIc cyclic gassericin A-like; InterPro: IPR020970 This class of bacteriocins was previously described as class V. The members include gassericin A, acidocin B and butyrovibriocin AR10, all of which are hydrophobic cyclical structures []. The N- and C-termini are covalently linked, and the circular molecule is resistant to several proteases and peptidases []. The immunity protein that protects Lactobacillus gasseri from the toxic effects of its bacteriocin, gassericin A, has been identified. It is found to be a small positively-charged hydrophobic peptide of 53 amino acids containing a putative transmembrane segment [] - a structure unlike that of the more common immunity proteins as found in PF08951 from PFAM.
Probab=21.04 E-value=93 Score=21.35 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=12.6
Q ss_pred chhhHHHHHHHHHHHhh
Q 044065 6 TKVFSFIILAVLLLTII 22 (81)
Q Consensus 6 ~~v~sf~l~~vl~ls~~ 22 (81)
.++.||+|.++|+..++
T Consensus 12 nki~~~~i~a~LvV~ll 28 (91)
T PF12173_consen 12 NKIESFCIWAVLVVALL 28 (91)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57889998887776543
No 48
>smart00272 END Endothelin.
Probab=20.80 E-value=57 Score=17.71 Aligned_cols=9 Identities=22% Similarity=0.755 Sum_probs=7.6
Q ss_pred ccchHHHhh
Q 044065 53 GKCWKYCTT 61 (81)
Q Consensus 53 ~kCn~wC~~ 61 (81)
..|+.||+-
T Consensus 10 k~C~~FCh~ 18 (26)
T smart00272 10 KACAYFCHR 18 (26)
T ss_pred hHHHHHhcc
Confidence 599999974
No 49
>PHA03164 hypothetical protein; Provisional
Probab=20.33 E-value=56 Score=22.27 Aligned_cols=19 Identities=32% Similarity=0.716 Sum_probs=12.0
Q ss_pred ccchhhHHHHHHHHHHHhh
Q 044065 4 SQTKVFSFIILAVLLLTII 22 (81)
Q Consensus 4 ~~~~v~sf~l~~vl~ls~~ 22 (81)
++.|-|+|.+++-|..++|
T Consensus 53 nrRktftFlvLtgLaIamI 71 (88)
T PHA03164 53 NRRKTFTFLVLTGLAIAMI 71 (88)
T ss_pred hhhheeehHHHHHHHHHHH
Confidence 4677788877765544433
Done!