BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044068
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 261 bits (667), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 132/254 (51%), Positives = 165/254 (64%), Gaps = 7/254 (2%)
Query: 68 ADKIEKLPGQPYGVEIDQYSGYVTVDPKAGRALFYYFVES-QNSSTKPLVLWLNGGPGCS 126
AD+I +LPGQP V+ D YSGY+TVD AGR+LFY E+ +++ PLVLWLNGGPGCS
Sbjct: 8 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 127 SFGFGAMMELGPFRVNSDGKSLSHNEYAWNNVANMLFLESPAGVGFSYSNTSSDYVMNGD 186
S +GA ELG FRV G L NEY WN VAN+LFL+SPAGVGFSY+NTSSD +GD
Sbjct: 67 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 187 ERTAADSYTFLLNWFERFPEYKSRAFFLAGESYAGHYIPQVALTILQFNKNQTFINLKGL 246
RTA DSY FL WFERFP YK R F++AGESYAGHY+P+ L+ L INLKG
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPE--LSQLVHRSKNPVINLKGF 184
Query: 247 AMGDAWIDTETGNKGMFDFYWTHALISDEVIHGINSNC---NFTKFSKACASYLIKAYES 303
+G+ ID G F+F+W H ++SD+ + C +F S AC + A
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 244
Query: 304 MGNINILDIYAPLC 317
GNI++ +Y P+C
Sbjct: 245 QGNIDMYSLYTPVC 258
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 261 bits (666), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 132/254 (51%), Positives = 165/254 (64%), Gaps = 7/254 (2%)
Query: 68 ADKIEKLPGQPYGVEIDQYSGYVTVDPKAGRALFYYFVES-QNSSTKPLVLWLNGGPGCS 126
AD+I +LPGQP V+ D YSGY+TVD AGR+LFY E+ +++ PLVLWLNGGPGCS
Sbjct: 4 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 62
Query: 127 SFGFGAMMELGPFRVNSDGKSLSHNEYAWNNVANMLFLESPAGVGFSYSNTSSDYVMNGD 186
S +GA ELG FRV G L NEY WN VAN+LFL+SPAGVGFSY+NTSSD +GD
Sbjct: 63 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 122
Query: 187 ERTAADSYTFLLNWFERFPEYKSRAFFLAGESYAGHYIPQVALTILQFNKNQTFINLKGL 246
RTA DSY FL WFERFP YK R F++AGESYAGHY+P+ L+ L INLKG
Sbjct: 123 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPE--LSQLVHRSKNPVINLKGF 180
Query: 247 AMGDAWIDTETGNKGMFDFYWTHALISDEVIHGINSNC---NFTKFSKACASYLIKAYES 303
+G+ ID G F+F+W H ++SD+ + C +F S AC + A
Sbjct: 181 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 240
Query: 304 MGNINILDIYAPLC 317
GNI++ +Y P+C
Sbjct: 241 QGNIDMYSLYTPVC 254
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 260 bits (665), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 132/254 (51%), Positives = 165/254 (64%), Gaps = 7/254 (2%)
Query: 68 ADKIEKLPGQPYGVEIDQYSGYVTVDPKAGRALFYYFVES-QNSSTKPLVLWLNGGPGCS 126
AD+I +LPGQP V+ D YSGY+TVD AGR+LFY E+ +++ PLVLWLNGGPGCS
Sbjct: 3 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 61
Query: 127 SFGFGAMMELGPFRVNSDGKSLSHNEYAWNNVANMLFLESPAGVGFSYSNTSSDYVMNGD 186
S +GA ELG FRV G L NEY WN VAN+LFL+SPAGVGFSY+NTSSD +GD
Sbjct: 62 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 121
Query: 187 ERTAADSYTFLLNWFERFPEYKSRAFFLAGESYAGHYIPQVALTILQFNKNQTFINLKGL 246
RTA DSY FL WFERFP YK R F++AGESYAGHY+P+ L+ L INLKG
Sbjct: 122 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPE--LSQLVHRSKNPVINLKGF 179
Query: 247 AMGDAWIDTETGNKGMFDFYWTHALISDEVIHGINSNC---NFTKFSKACASYLIKAYES 303
+G+ ID G F+F+W H ++SD+ + C +F S AC + A
Sbjct: 180 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 239
Query: 304 MGNINILDIYAPLC 317
GNI++ +Y P+C
Sbjct: 240 QGNIDMYSLYTPVC 253
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/254 (51%), Positives = 165/254 (64%), Gaps = 7/254 (2%)
Query: 68 ADKIEKLPGQPYGVEIDQYSGYVTVDPKAGRALFYYFVES-QNSSTKPLVLWLNGGPGCS 126
AD+I +LPGQP V+ D YSGY+TVD AGR+LFY E+ +++ PLVLWLNGGPGCS
Sbjct: 8 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 127 SFGFGAMMELGPFRVNSDGKSLSHNEYAWNNVANMLFLESPAGVGFSYSNTSSDYVMNGD 186
S +GA ELG FRV G L NEY WN VAN+LFL+SPAGVGFSY+NTSSD +GD
Sbjct: 67 SVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 187 ERTAADSYTFLLNWFERFPEYKSRAFFLAGESYAGHYIPQVALTILQFNKNQTFINLKGL 246
RTA DSY FL WFERFP YK R F++AGESYAGHY+P+ L+ L INLKG
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPE--LSQLVHRSKNPVINLKGF 184
Query: 247 AMGDAWIDTETGNKGMFDFYWTHALISDEVIHGINSNC---NFTKFSKACASYLIKAYES 303
+G+ ID G F+F+W H ++SD+ + C +F S AC + A
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 244
Query: 304 MGNINILDIYAPLC 317
GNI++ +Y P+C
Sbjct: 245 QGNIDMYSLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/257 (51%), Positives = 161/257 (62%), Gaps = 8/257 (3%)
Query: 66 KEADKIEKLPGQPYGVEIDQYSGYVTVDPKAGRALFYYFVESQNSSTKP--LVLWLNGGP 123
+E D+I LPGQP GV Y GYVT+D GRAL+Y+F E+ + LVLWLNGGP
Sbjct: 5 QEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGP 64
Query: 124 GCSSFGFGAMMELGPFRVNSDGKSLSHNEYAWNNVANMLFLESPAGVGFSYSNTSSDYVM 183
GCSS G GAM ELG FRV+++G+SL NEYAWN AN+LF ESPAGVGFSYSNTSSD M
Sbjct: 65 GCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSM 124
Query: 184 NGDERTAADSYTFLLNWFERFPEYKSRAFFLAGESYAGHYIPQVALTILQFNKNQTFINL 243
GD++ A D+YTFL+ WFERFP Y R F++AGES GH+IPQ++ + + N FIN
Sbjct: 125 -GDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSPFINF 181
Query: 244 KGLAMGDAWIDTETGNKGMFDFYWTHALISDEVIHGINSNCNFTKF---SKACASYLIKA 300
+GL + + GMF+ +W H LISDE C T F + C KA
Sbjct: 182 QGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWNKA 241
Query: 301 YESMGNINILDIYAPLC 317
GNIN IY P C
Sbjct: 242 LAEQGNINPYTIYTPTC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 224/459 (48%), Gaps = 62/459 (13%)
Query: 67 EADKIEKLPGQPYGVEIDQYSGYVTVDPKAGRALFYYFVESQ-NSSTKPLVLWLNGGPGC 125
+ D+I++LPG QYSGY+ + L Y+FVESQ + P+VLWLNGGPGC
Sbjct: 3 DQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPGC 60
Query: 126 SSFGFGAMMELGPFRVNSDGKSLSHNEYAWNNVANMLFLESPAGVGFSYSNTSSDYVMNG 185
SS G + E GPF V DG +L +N Y+WN +AN+L+LESPAGVGFSYS+ +
Sbjct: 61 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATN 117
Query: 186 DERTAADSYTFLLNWFERFPEYKSRAFFLAGESYAGHYIPQVALTILQFNKNQTFINLKG 245
D A ++ L ++F FPEYK+ FL GESYAG YIP +A+ ++Q +NL+G
Sbjct: 118 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ----DPSMNLQG 173
Query: 246 LAMGDAWIDTETGNKGMFDFYWTHALISDEV-----IHGINSN-CNFTKFSK-ACASYLI 298
LA+G+ E + + F + H L+ + + H + N CNF C + L
Sbjct: 174 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQ 233
Query: 299 KAYESMGN--INILDIYAP----------------LCXXXXXXXXVLPFD---------- 330
+ +GN +NI ++YAP + LP
Sbjct: 234 EVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRS 293
Query: 331 --------PCSEIYVHS-YLNSPQVQKSLHANVTGIRGPWQDCSDTVLRHWKDSPLTVLP 381
PC+ S YLN+P V+K+L N+ W C+ V ++ ++
Sbjct: 294 GDKVRMDPPCTNTTAASTYLNNPYVRKAL--NIPEQLPQWDMCNFLVNLQYRRLYRSMNS 351
Query: 382 SIQELMTS-GISVYIYSGDTDGMVPTISTRYSINKLEAKVKTAWYPWYIQ----GEXXX- 435
+L++S + +Y+GD D + + ++ L K++ PW ++ GE
Sbjct: 352 QYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAG 411
Query: 436 XXXXXQNLTFVAIRGAGHMVPSSQPARALAFFSSFLDGK 474
++ F+ I+GAGHMVP+ +P A FS FL+ +
Sbjct: 412 FVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQ 450
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 148/259 (57%), Gaps = 19/259 (7%)
Query: 67 EADKIEKLPGQPYGVEIDQYSGYVTVDPKAGRALFYYFVESQ-NSSTKPLVLWLNGGPGC 125
+ D+I++LPG QYSGY+ + L Y+FVESQ + P+VLWLNGGPGC
Sbjct: 5 DQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGPGC 62
Query: 126 SSFGFGAMMELGPFRVNSDGKSLSHNEYAWNNVANMLFLESPAGVGFSYSNTSSDYVMNG 185
SS G + E GPF V DG +L +N Y+WN +AN+L+LESPAGVGFSYS+ +
Sbjct: 63 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATN 119
Query: 186 DERTAADSYTFLLNWFERFPEYKSRAFFLAGESYAGHYIPQVALTILQFNKNQTFINLKG 245
D A ++ L ++F FPEYK+ FL GESYAG YIP +A+ ++Q +NL+G
Sbjct: 120 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ----DPSMNLQG 175
Query: 246 LAMGDAWIDTETGNKGMFDFYWTHALISDEV-----IHGINSN-CNFTKFSK-ACASYLI 298
LA+G+ E + + F + H L+ + + H + N CNF C + L
Sbjct: 176 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQ 235
Query: 299 KAYESMGN--INILDIYAP 315
+ +GN +NI ++YAP
Sbjct: 236 EVARIVGNSGLNIYNLYAP 254
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 147 bits (370), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 329 FDPCSEIYVHSYLNSPQVQKSLHANVTG-IRGPWQDCSDTVLRHWKDSPLTVLPSIQELM 387
+DPC+E Y +Y N VQ +LHANVTG + W CSDT+ HW D+P ++LP +EL+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 388 TSGISVYIYSGDTDGMVPTISTRYSINKLEAKVKTAWYPWYIQGEXXXXXXXXQNLTFVA 447
+G+ ++++SGDTD +VP +TRYSI L T+WYPWY E + LT V+
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 448 IRGAGHMVPSSQPARALAFFSSFLDGKLPPA 478
+RGAGH VP +P +AL F FL GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 147 bits (370), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 329 FDPCSEIYVHSYLNSPQVQKSLHANVTG-IRGPWQDCSDTVLRHWKDSPLTVLPSIQELM 387
+DPC+E Y +Y N VQ +LHANVTG + W CSDT+ HW D+P ++LP +EL+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 388 TSGISVYIYSGDTDGMVPTISTRYSINKLEAKVKTAWYPWYIQGEXXXXXXXXQNLTFVA 447
+G+ ++++SGDTD +VP +TRYSI L T+WYPWY E + LT V+
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 448 IRGAGHMVPSSQPARALAFFSSFLDGKLPPA 478
+RGAGH VP +P +AL F FL GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 147 bits (370), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 329 FDPCSEIYVHSYLNSPQVQKSLHANVTG-IRGPWQDCSDTVLRHWKDSPLTVLPSIQELM 387
+DPC+E Y +Y N VQ +LHANVTG + W CSDT+ HW D+P ++LP +EL+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 388 TSGISVYIYSGDTDGMVPTISTRYSINKLEAKVKTAWYPWYIQGEXXXXXXXXQNLTFVA 447
+G+ ++++SGDTD +VP +TRYSI L T+WYPWY E + LT V+
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 448 IRGAGHMVPSSQPARALAFFSSFLDGKLPPA 478
+RGAGH VP +P +AL F FL GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 147 bits (370), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 329 FDPCSEIYVHSYLNSPQVQKSLHANVTG-IRGPWQDCSDTVLRHWKDSPLTVLPSIQELM 387
+DPC+E Y +Y N VQ +LHANVTG + W CSDT+ HW D+P ++LP +EL+
Sbjct: 4 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 63
Query: 388 TSGISVYIYSGDTDGMVPTISTRYSINKLEAKVKTAWYPWYIQGEXXXXXXXXQNLTFVA 447
+G+ ++++SGDTD +VP +TRYSI L T+WYPWY E + LT V+
Sbjct: 64 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 123
Query: 448 IRGAGHMVPSSQPARALAFFSSFLDGKLPPA 478
+RGAGH VP +P +AL F FL GK P
Sbjct: 124 VRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 154
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 144 bits (364), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 99/155 (63%), Gaps = 4/155 (2%)
Query: 328 PFDPCSEIYVHSYLNSPQVQKSLHANVTGI-RGPWQDCSDTVLRHWKDSPLTVLPSIQEL 386
P+DPC+ +YLN P+VQ +LHANV+GI PW CS+T+ W + +LP +EL
Sbjct: 3 PYDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYREL 62
Query: 387 MTSGISVYIYSGDTDGMVPTISTRYSINKLEAKVKTAWYPWYI---QGEXXXXXXXXQNL 443
+ +G+ V++YSGDTD +VP STR S+ LE VKT+WYPWY+ + E + L
Sbjct: 63 IQAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGL 122
Query: 444 TFVAIRGAGHMVPSSQPARALAFFSSFLDGKLPPA 478
T+V +RGAGH+VP +PA+A F FL G+ PA
Sbjct: 123 TYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMPA 157
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 126/422 (29%), Positives = 192/422 (45%), Gaps = 70/422 (16%)
Query: 93 DPKAGRALFYYFVESQNSST-----KPLVLWLNGGPGCSSFGFGAMMELGPFRVNSDGKS 147
D + L Y+F + N+ + +PL++WLNGGPGCSS GA++E GPFRVNSDGK
Sbjct: 42 DEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GALVESGPFRVNSDGK- 99
Query: 148 LSHNEYAWNNVANMLFLESPAGVGFSYSNTSSDYVMNGD------ERTAADSYTFLLNWF 201
L NE +W + ++LF++ P G GFS + ++ + E FL N+F
Sbjct: 100 LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYF 159
Query: 202 ERFPEYKSRAFFLAGESYAGHYIPQVALTILQFNK----NQTFINLKGLAMGDAWIDTET 257
+ FPE +R L+GESYAG YIP A IL NK + +LK L +G+ WID T
Sbjct: 160 KIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNT 219
Query: 258 GNKGMFDFYWTHALISDEVIHGINSNCNFTKFSKA---CASYLIKA---------YESMG 305
+ F LI + SN NF + A C + + A Y+
Sbjct: 220 QSLSYLPFAMEKKLIDE-------SNPNFKHLTNAHENCQNLINSASTDEAAHFSYQECE 272
Query: 306 NI-NILDIYAPLCXXXXXXXXVLPFD--------------PCSEIYVHSYLNSPQVQKSL 350
NI N+L Y + ++ P +V + ++P V SL
Sbjct: 273 NILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNWPKDISFVSKFFSTPGVIDSL 332
Query: 351 HANVTGIRGPWQDCSDTVLRHWKDSPLTVLPSIQ---ELMTSGISVYIYSGDTDGMVPTI 407
H + I W++C+++V +P++ PSI L+ SGI + +++GD D +
Sbjct: 333 HLDSDKIDH-WKECTNSVGTKLS-NPISK-PSIHLLPGLLESGIEIVLFNGDKDLICNNK 389
Query: 408 STRYSINKLE-AKVK-----TAWYPWYIQG-------EXXXXXXXXQNLTFVAIRGAGHM 454
+I+ L+ +K + W + E +NLTFV++ A HM
Sbjct: 390 GVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSVYNASHM 449
Query: 455 VP 456
VP
Sbjct: 450 VP 451
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 195/428 (45%), Gaps = 61/428 (14%)
Query: 83 IDQYSGYVTVDPKAGRALFYYFVESQNSSTKPLVLWLNGGPGCSSFGFGAMMELGPFRVN 142
+ QY+GY+ V+ + F+ F + + P++LWLNGGPGCSS G ELGP +
Sbjct: 14 VTQYTGYLDVEDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIG 72
Query: 143 SDGKSLSHNEYAWNNVANMLFLESPAGVGFSYSNTSSDYVMNGDERTAADSYTFLLNWFE 202
D K + N Y+WN+ A ++FL+ P VGFSYS +S ++ D Y FL +F+
Sbjct: 73 PDLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFFD 128
Query: 203 RFPEY--KSRAFFLAGESYAGHYIPQVALTILQFNKNQTFINLKGLAMGDAWIDTETGNK 260
+FPEY K + F +AGESYAGHYIP A IL +K++ F NL + +G+ D T
Sbjct: 129 QFPEYVNKGQDFHIAGESYAGHYIPVFASEILS-HKDRNF-NLTSVLIGNGLTDPLT--- 183
Query: 261 GMFDFYWTHA---------LISDEV---------IHGINSNCNFTKFSKACASYLI---- 298
+++Y A L S+E G+ +C ++ +C I
Sbjct: 184 -QYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIYCNN 242
Query: 299 ---KAYESMGNINILDIYAPLCXXXXXXXXVLPFDPCSEIYVHSYLNSPQVQKSLHANVT 355
Y+ G N+ DI C L + YLN V++++ A V
Sbjct: 243 AQLAPYQRTGR-NVYDIRKD-CEGGNLCYPTLQ-------DIDDYLNQDYVKEAVGAEVD 293
Query: 356 GIRGPWQDCSDTVLRHWKDSPLTVLP---SIQELMTSGISVYIYSGDTDGMVPTISTRYS 412
++ C+ + R++ + + P ++ +L+ + + +Y+GD D + + +
Sbjct: 294 H----YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAW 349
Query: 413 INKLE-------AKVKTAWYPWYIQGEXXXXXXXXQNLTFVAIRGAGHMVPSSQPARALA 465
+ L A K + I E ++ T++ + GHMVP P AL+
Sbjct: 350 TDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALS 409
Query: 466 FFSSFLDG 473
+ ++ G
Sbjct: 410 MVNEWIHG 417
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 116/428 (27%), Positives = 193/428 (45%), Gaps = 61/428 (14%)
Query: 83 IDQYSGYVTVDPKAGRALFYYFVESQNSSTKPLVLWLNGGPGCSSFGFGAMMELGPFRVN 142
+ QY+GY+ V+ + F+ F + + P++LWLNGGPGCSS G LGP +
Sbjct: 14 VTQYTGYLDVEDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIG 72
Query: 143 SDGKSLSHNEYAWNNVANMLFLESPAGVGFSYSNTSSDYVMNGDERTAADSYTFLLNWFE 202
D K + N Y+WN+ A ++FL+ P VGFSYS +S ++ D Y FL +F+
Sbjct: 73 PDLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFFD 128
Query: 203 RFPEY--KSRAFFLAGESYAGHYIPQVALTILQFNKNQTFINLKGLAMGDAWIDTETGNK 260
+FPEY K + F +AG SYAGHYIP A IL +K++ F NL + +G+ D T
Sbjct: 129 QFPEYVNKGQDFHIAGASYAGHYIPVFASEILS-HKDRNF-NLTSVLIGNGLTDPLT--- 183
Query: 261 GMFDFYWTHA---------LISDEV---------IHGINSNCNFTKFSKACASYLI---- 298
+++Y A L S+E G+ +C ++ +C I
Sbjct: 184 -QYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIYCNN 242
Query: 299 ---KAYESMGNINILDIYAPLCXXXXXXXXVLPFDPCSEIYVHSYLNSPQVQKSLHANVT 355
Y+ G N+ DI C L + YLN V++++ A V
Sbjct: 243 AQLAPYQRTGR-NVYDIRKD-CEGGNLCYPTLQ-------DIDDYLNQDYVKEAVGAEVD 293
Query: 356 GIRGPWQDCSDTVLRHWKDSPLTVLP---SIQELMTSGISVYIYSGDTDGMVPTISTRYS 412
++ C+ + R++ + + P ++ +L+ + + +Y+GD D + + +
Sbjct: 294 H----YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAW 349
Query: 413 INKLE-------AKVKTAWYPWYIQGEXXXXXXXXQNLTFVAIRGAGHMVPSSQPARALA 465
+ L A K + I E ++ T++ + GHMVP P AL+
Sbjct: 350 TDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALS 409
Query: 466 FFSSFLDG 473
+ ++ G
Sbjct: 410 MVNEWIHG 417
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 331 PCSEIYVHS-YLNSPQVQKSLHANVTGIRGPWQDCSDTVLRHWKDSPLTVLPSIQELMTS 389
PC+ S YLN+P V+K+L N+ W C+ V ++ ++ +L++S
Sbjct: 4 PCTNTTAASTYLNNPYVRKAL--NIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSS 61
Query: 390 -GISVYIYSGDTDGMVPTISTRYSINKLEAKVKTAWYPWYIQ----GEXXX-XXXXXQNL 443
+ +Y+GD D + + ++ L K++ PW ++ GE ++
Sbjct: 62 QKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI 121
Query: 444 TFVAIRGAGHMVPSSQPARALAFFSSFLDGK 474
F+ I+GAGHMVP+ +P A FS FL+ +
Sbjct: 122 AFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQ 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,523,291
Number of Sequences: 62578
Number of extensions: 624811
Number of successful extensions: 1444
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1370
Number of HSP's gapped (non-prelim): 23
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)