Your job contains 1 sequence.
>044070
MAVSEEVCSTAKSRSSPSSSSAPASPPRNIHYLAKCVLKGSVVLQVAHGHLRSPTSNDVV
FGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISD
SGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFS
LSMSSGSDIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPIL
AIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDA
LLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDY
DPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLS
ECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYH
DEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLV
LSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAH
SGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQ
HMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVL
SFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP
DSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFL
VPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENS
LNL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044070
(903 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2081576 - symbol:AT3G11960 species:3702 "Arabi... 2850 7.2e-297 1
TAIR|locus:2100616 - symbol:SAP130a "spliceosome-associat... 227 9.3e-28 5
TAIR|locus:2100646 - symbol:SAP130b "spliceosome-associat... 227 9.3e-28 5
UNIPROTKB|A0JN52 - symbol:SF3B3 "Splicing factor 3B subun... 227 9.3e-24 4
UNIPROTKB|E2RR33 - symbol:SF3B3 "Uncharacterized protein"... 227 9.3e-24 4
UNIPROTKB|Q15393 - symbol:SF3B3 "Splicing factor 3B subun... 227 9.3e-24 4
MGI|MGI:1289341 - symbol:Sf3b3 "splicing factor 3b, subun... 227 9.3e-24 4
UNIPROTKB|F1P529 - symbol:SF3B3 "Uncharacterized protein"... 228 1.5e-23 4
ZFIN|ZDB-GENE-040426-2901 - symbol:sf3b3 "splicing factor... 221 8.3e-23 4
FB|FBgn0035162 - symbol:CG13900 species:7227 "Drosophila ... 208 1.4e-20 4
WB|WBGene00019323 - symbol:teg-4 species:6239 "Caenorhabd... 193 1.1e-19 4
TAIR|locus:2127368 - symbol:DDB1B "damaged DNA binding pr... 235 2.7e-19 4
RGD|1311636 - symbol:Sf3b3 "splicing factor 3b, subunit 3... 227 6.8e-19 3
UNIPROTKB|E9PT66 - symbol:Sf3b3 "Protein Sf3b3" species:1... 227 7.4e-19 3
TAIR|locus:2115909 - symbol:DDB1A "damaged DNA binding pr... 235 8.5e-19 4
UNIPROTKB|F1RIE2 - symbol:DDB1 "Uncharacterized protein" ... 234 2.2e-18 4
FB|FBgn0260962 - symbol:pic "piccolo" species:7227 "Droso... 223 4.8e-18 3
UNIPROTKB|Q5R649 - symbol:DDB1 "DNA damage-binding protei... 229 4.9e-18 4
DICTYBASE|DDB_G0282569 - symbol:sf3b3 "splicing factor 3B... 158 5.4e-18 3
UNIPROTKB|J9NVR7 - symbol:DDB1 "Uncharacterized protein" ... 229 5.9e-18 4
UNIPROTKB|F5GY55 - symbol:DDB1 "Uncharacterized protein" ... 229 6.2e-18 4
GENEDB_PFALCIPARUM|PFL1680w - symbol:PFL1680w "splicing f... 175 6.9e-18 4
UNIPROTKB|Q8I574 - symbol:PFL1680w "Splicing factor 3b, s... 175 6.9e-18 4
UNIPROTKB|A1A4K3 - symbol:DDB1 "DNA damage-binding protei... 229 7.7e-18 4
UNIPROTKB|E2R9E3 - symbol:DDB1 "Uncharacterized protein" ... 229 7.7e-18 4
UNIPROTKB|Q16531 - symbol:DDB1 "DNA damage-binding protei... 229 7.7e-18 4
MGI|MGI:1202384 - symbol:Ddb1 "damage specific DNA bindin... 228 9.9e-18 4
UNIPROTKB|F1NVV3 - symbol:DDB1 "DNA damage-binding protei... 233 1.1e-17 4
UNIPROTKB|F1P4I8 - symbol:DDB1 "DNA damage-binding protei... 233 1.1e-17 4
UNIPROTKB|F1NVV2 - symbol:DDB1 "DNA damage-binding protei... 233 1.1e-17 4
UNIPROTKB|Q805F9 - symbol:DDB1 "DNA damage-binding protei... 233 1.2e-17 4
UNIPROTKB|F5H6C5 - symbol:DDB1 "DNA damage-binding protei... 222 3.7e-17 1
RGD|621889 - symbol:Ddb1 "damage-specific DNA binding pro... 224 4.2e-17 4
ZFIN|ZDB-GENE-040426-1272 - symbol:ddb1 "damage specific ... 220 6.7e-17 3
UNIPROTKB|Q6P6Z0 - symbol:ddb1 "DNA damage-binding protei... 218 2.4e-16 4
UNIPROTKB|P33194 - symbol:DDB1 "DNA damage-binding protei... 229 3.1e-16 3
POMBASE|SPAPJ698.03c - symbol:prp12 "U2 snRNP-associated ... 148 5.8e-16 5
ASPGD|ASPL0000031473 - symbol:AN5452 species:162425 "Emer... 169 5.1e-14 3
DICTYBASE|DDB_G0286013 - symbol:repE "UV-damaged DNA bind... 106 3.2e-12 4
WB|WBGene00010890 - symbol:ddb-1 species:6239 "Caenorhabd... 141 3.1e-07 5
UNIPROTKB|Q21554 - symbol:ddb-1 "DNA damage-binding prote... 141 3.1e-07 5
ASPGD|ASPL0000052925 - symbol:ddbA species:162425 "Emeric... 138 3.4e-05 1
>TAIR|locus:2081576 [details] [associations]
symbol:AT3G11960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0009755 "hormone-mediated signaling pathway"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0048825 "cotyledon development" evidence=RCA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 KO:K12830 EMBL:BT006164
EMBL:AK229623 IPI:IPI00530914 RefSeq:NP_187802.2 UniGene:At.5413
ProteinModelPortal:Q84R20 IntAct:Q84R20 PaxDb:Q84R20 PRIDE:Q84R20
EnsemblPlants:AT3G11960.1 GeneID:820369 KEGG:ath:AT3G11960
TAIR:At3g11960 eggNOG:NOG322382 HOGENOM:HOG000030342
InParanoid:Q84R20 OMA:GMLLRFE PhylomeDB:Q84R20
ProtClustDB:CLSN2690873 ArrayExpress:Q84R20 Genevestigator:Q84R20
Uniprot:Q84R20
Length = 1379
Score = 2850 (1008.3 bits), Expect = 7.2e-297, P = 7.2e-297
Identities = 567/879 (64%), Positives = 677/879 (77%)
Query: 31 HYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTI 90
HYLAKC+L+ SVVLQVA+G+ RSP+S D+VFGKET IELV+IGEDGIV+SVCEQ VFGTI
Sbjct: 35 HYLAKCILRPSVVLQVAYGYFRSPSSRDIVFGKETCIELVVIGEDGIVESVCEQYVFGTI 94
Query: 91 KDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNS 150
KDLAV+P + K + NS MGKDLL V+SDSGKLSFL+F NEMHRF P+ V LS PGNS
Sbjct: 95 KDLAVIPQSSKLYS-NSLQMGKDLLAVLSDSGKLSFLSFSNEMHRFSPIQHVQLSTPGNS 153
Query: 151 RHQLGRMLAVDSSGCLIAVSAYEDRXXXXXXXXXXXXDIIDKKICYPSESEVDTSASRIA 210
R QLGRML +DSSG +AVSAY DR DII ++I YPSE + S+ +
Sbjct: 154 RIQLGRMLTIDSSGLFLAVSAYHDRFALFSLSTSSMGDIIHQRISYPSEDGGNGSSIQ-- 211
Query: 211 QKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLS 270
+ISGTIWSMCFIS D + SKE+ PILAI++NR+G+L+NEL L WN++E +I ++S
Sbjct: 212 ---AISGTIWSMCFISKDFNE-SKEYAPILAIVINRKGSLMNELALFRWNVKEESICLIS 267
Query: 271 CFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQN 330
+ E G LAH +VEVP S GFAF+FRIGD LLMDLRDP NP C++RTSL+F+P +L E++
Sbjct: 268 EYVETGALAHSIVEVPHSSGFAFLFRIGDVLLMDLRDPQNPCCLFRTSLDFVPASLMEEH 327
Query: 331 FVDESCRVHDVDDEGLFNVAACALLELRDY-----DPMCIDSDSGNAKEPSKHVCSWSWE 385
FV+ESCRV D DDEG NV CALLELRD+ DPM ID++S K SK+V SW+WE
Sbjct: 328 FVEESCRVQDGDDEGC-NVVVCALLELRDHEVRDHDPMFIDTESDIGKLSSKNVSSWTWE 386
Query: 386 PETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVE 445
PE + P+M+ C+D G+FFM E+ + DG KV+LSECLYKG PCK +LW+EG FL+ F E
Sbjct: 387 PENNHNPRMIICLDNGDFFMFELIYEDDGVKVNLSECLYKGLPCKDILWIEGGFLATFAE 446
Query: 446 MGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSG 505
M DG V K +L + S IQNIAPILD SV+D +EKRDQ+FACCGV PEGSLRIIRSG
Sbjct: 447 MADGTVFKLGTEKLHWMSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSG 506
Query: 506 ISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGF 565
I++EKLL+TAP+YQGITGTWTV+MK++D YHSFLVLSFVEETRVL VGL+F DVTDSVGF
Sbjct: 507 INVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGF 566
Query: 566 RPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGA 625
+ DVCT ACGLVADGLLVQIHQ+A+RLCMPTM AHS GIP+S P +SWFPE+VSISLGA
Sbjct: 567 QSDVCTFACGLVADGLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISLGA 626
Query: 626 VAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKXXX 685
V N+I+VSTSNPCFL ILGV+S+S EIYE+Q + LQ E+SCIS+PQKH +++
Sbjct: 627 VGQNLIVVSTSNPCFLSILGVKSVSSQCCEIYEIQRVTLQYEVSCISVPQKHIGKKRSRD 686
Query: 686 XXXXXXXXXVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKE-GLRVLASGSIVLTNTMGT 744
A+P+ + GYTF+IGTH+PSVEVLSF G+RVLASG + LTNTMGT
Sbjct: 687 SSPDNFCKA--AIPSAMEQGYTFLIGTHKPSVEVLSFTEDGVGVRVLASGLVSLTNTMGT 744
Query: 745 AISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTEN 804
ISGCIPQDVRLVL DQ YVL+GLRNGMLLRFEW P SN P + F + +
Sbjct: 745 VISGCIPQDVRLVLVDQLYVLSGLRNGMLLRFEWAPFSNSSGLNCPDY------FSHCKE 798
Query: 805 IRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTA 864
+ KD LP+NL LIATRRIGITPVFLVP SDSLD+D+IALSDRPWLLQTA
Sbjct: 799 EMDTVVG-----KKDNLPVNLLLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTA 853
Query: 865 RHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
R SL+YTSISFQPSTHATPVCS ECP+GILFV+EN L+L
Sbjct: 854 RQSLSYTSISFQPSTHATPVCSFECPQGILFVSENCLHL 892
>TAIR|locus:2100616 [details] [associations]
symbol:SAP130a "spliceosome-associated protein 130 a"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 227 (85.0 bits), Expect = 9.3e-28, Sum P(5) = 9.3e-28
Identities = 45/133 (33%), Positives = 79/133 (59%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518
LV ++++ P++DM V++ +E+ Q+F+ CG P SLRI+R G+++ ++ + +
Sbjct: 393 LVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMA-VSQLP 451
Query: 519 QGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVA 578
+ WTV+ VSD + +++V+SF T VL +G +V DS GF +LA L+
Sbjct: 452 GQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDS-GFLDTTPSLAVSLIG 510
Query: 579 DGLLVQIHQNAVR 591
D L+Q+H N +R
Sbjct: 511 DDSLMQVHPNGIR 523
Score = 115 (45.5 bits), Expect = 9.3e-28, Sum P(5) = 9.3e-28
Identities = 39/143 (27%), Positives = 67/143 (46%)
Query: 32 YLAKCVLKGSVVLQVA-HGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTI 90
YL L+ + + A +G+ + ++ + ++L+ E+G +Q++ VFG I
Sbjct: 2 YLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAI 61
Query: 91 KDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNS 150
+ LA +F +Q KD +VV SDSG++ L + E + F V Q G
Sbjct: 62 RSLA------QFRLTGAQ---KDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCR 112
Query: 151 RHQLGRMLAVDSSGCLIAVSAYE 173
R G+ +AVD G + + A E
Sbjct: 113 RIVPGQYVAVDPKGRAVMIGACE 135
Score = 97 (39.2 bits), Expect = 9.3e-28, Sum P(5) = 9.3e-28
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
+R +G+ P L +S + M+ LS RPWL R T +S++ A P S +C
Sbjct: 686 SRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQC 745
Query: 890 PKGILFVAENSLNL 903
+G++ VA ++L +
Sbjct: 746 AEGVVSVAGDALRI 759
Score = 53 (23.7 bits), Expect = 9.3e-28, Sum P(5) = 9.3e-28
Identities = 18/83 (21%), Positives = 38/83 (45%)
Query: 695 VPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLT--NTMGTAISGCIPQ 752
+ +P G +G++ +V +LS P + L++L+ S+ + + + I
Sbjct: 589 IAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGG 648
Query: 753 DVRLVLADQFYVLAGLRNGMLLR 775
D ++ +GL+NG+L R
Sbjct: 649 DDGADHPANLFLNSGLQNGVLFR 671
Score = 48 (22.0 bits), Expect = 9.3e-28, Sum P(5) = 9.3e-28
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 353 ALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIP-KMVFCVDTGEFFMIEIAFG 411
A +EL DY D A E KH+ + + + + K VD G ++ + G
Sbjct: 182 AAIEL-DYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGG 240
Query: 412 SDG 414
+DG
Sbjct: 241 ADG 243
>TAIR|locus:2100646 [details] [associations]
symbol:SAP130b "spliceosome-associated protein 130 b"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 227 (85.0 bits), Expect = 9.3e-28, Sum P(5) = 9.3e-28
Identities = 45/133 (33%), Positives = 79/133 (59%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518
LV ++++ P++DM V++ +E+ Q+F+ CG P SLRI+R G+++ ++ + +
Sbjct: 393 LVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMA-VSQLP 451
Query: 519 QGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVA 578
+ WTV+ VSD + +++V+SF T VL +G +V DS GF +LA L+
Sbjct: 452 GQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDS-GFLDTTPSLAVSLIG 510
Query: 579 DGLLVQIHQNAVR 591
D L+Q+H N +R
Sbjct: 511 DDSLMQVHPNGIR 523
Score = 115 (45.5 bits), Expect = 9.3e-28, Sum P(5) = 9.3e-28
Identities = 39/143 (27%), Positives = 67/143 (46%)
Query: 32 YLAKCVLKGSVVLQVA-HGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTI 90
YL L+ + + A +G+ + ++ + ++L+ E+G +Q++ VFG I
Sbjct: 2 YLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAI 61
Query: 91 KDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNS 150
+ LA +F +Q KD +VV SDSG++ L + E + F V Q G
Sbjct: 62 RSLA------QFRLTGAQ---KDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCR 112
Query: 151 RHQLGRMLAVDSSGCLIAVSAYE 173
R G+ +AVD G + + A E
Sbjct: 113 RIVPGQYVAVDPKGRAVMIGACE 135
Score = 97 (39.2 bits), Expect = 9.3e-28, Sum P(5) = 9.3e-28
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
+R +G+ P L +S + M+ LS RPWL R T +S++ A P S +C
Sbjct: 686 SRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQC 745
Query: 890 PKGILFVAENSLNL 903
+G++ VA ++L +
Sbjct: 746 AEGVVSVAGDALRI 759
Score = 53 (23.7 bits), Expect = 9.3e-28, Sum P(5) = 9.3e-28
Identities = 18/83 (21%), Positives = 38/83 (45%)
Query: 695 VPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLT--NTMGTAISGCIPQ 752
+ +P G +G++ +V +LS P + L++L+ S+ + + + I
Sbjct: 589 IAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGG 648
Query: 753 DVRLVLADQFYVLAGLRNGMLLR 775
D ++ +GL+NG+L R
Sbjct: 649 DDGADHPANLFLNSGLQNGVLFR 671
Score = 48 (22.0 bits), Expect = 9.3e-28, Sum P(5) = 9.3e-28
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 353 ALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIP-KMVFCVDTGEFFMIEIAFG 411
A +EL DY D A E KH+ + + + + K VD G ++ + G
Sbjct: 182 AAIEL-DYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGG 240
Query: 412 SDG 414
+DG
Sbjct: 241 ADG 243
>UNIPROTKB|A0JN52 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 GO:GO:0071013 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:BC126518 IPI:IPI00690059
RefSeq:NP_001071319.1 UniGene:Bt.7895 ProteinModelPortal:A0JN52
STRING:A0JN52 PRIDE:A0JN52 Ensembl:ENSBTAT00000014050 GeneID:504962
KEGG:bta:504962 CTD:23450 HOVERGEN:HBG093942 InParanoid:A0JN52
OrthoDB:EOG4RV2QJ BioCyc:CATTLE:504962-MONOMER BindingDB:A0JN52
NextBio:20866909 ArrayExpress:A0JN52 Uniprot:A0JN52
Length = 1217
Score = 227 (85.0 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 62/207 (29%), Positives = 103/207 (49%)
Query: 389 DKIP-KMVFCV-DTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAF-VE 445
D +P CV TG F + FG+ H +L + + G + E F SA +E
Sbjct: 331 DTVPVAAAMCVLKTG-FLFVASEFGN--H--YLYQIAHLGDDDE-----EPEFSSAMPLE 380
Query: 446 MGDGMVLKEENGR-LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504
GD + + LV + +++PIL + D +E Q++ CG P SLR++R
Sbjct: 381 EGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRH 440
Query: 505 GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVG 564
G+ + ++ + + WTVR + D + +++++SFV T VL +G +VTDS G
Sbjct: 441 GLEVSEMA-VSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-G 498
Query: 565 FRPDVCTLACGLVADGLLVQIHQNAVR 591
F TL+C L+ D LVQ++ + +R
Sbjct: 499 FLGTTPTLSCSLLGDDALVQVYPDGIR 525
Score = 97 (39.2 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 38/144 (26%), Positives = 61/144 (42%)
Query: 32 YLAKCVLKGSVVLQVA-HGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGT 89
+L L+ + + A HG+ ++V + +EL+ + G V ++ VFG
Sbjct: 2 FLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGV 61
Query: 90 IKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGN 149
I+ L F KD +VV SDSG++ L + + F + Q G
Sbjct: 62 IRSLMA------FRLTGGT---KDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGC 112
Query: 150 SRHQLGRMLAVDSSGCLIAVSAYE 173
R G+ LAVD G + +SA E
Sbjct: 113 RRIVPGQFLAVDPKGRAVMISAIE 136
Score = 94 (38.1 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
TR +G PV L + ++A+S R WL + + T +S++ A+ S +C
Sbjct: 691 TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQC 750
Query: 890 PKGILFVAENSLNL 903
P+GI+ ++ N+L +
Sbjct: 751 PEGIVAISTNTLRI 764
Score = 41 (19.5 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 763 YVLAGLRNGMLLR 775
Y+ GL+NG+LLR
Sbjct: 664 YLNIGLQNGVLLR 676
>UNIPROTKB|E2RR33 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830 OMA:FDTIPVA
CTD:23450 EMBL:AAEX03004077 RefSeq:XP_536791.2
Ensembl:ENSCAFT00000032086 GeneID:479659 KEGG:cfa:479659
Uniprot:E2RR33
Length = 1217
Score = 227 (85.0 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 62/207 (29%), Positives = 103/207 (49%)
Query: 389 DKIP-KMVFCV-DTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAF-VE 445
D +P CV TG F + FG+ H +L + + G + E F SA +E
Sbjct: 331 DTVPVAAAMCVLKTG-FLFVASEFGN--H--YLYQIAHLGDDDE-----EPEFSSAMPLE 380
Query: 446 MGDGMVLKEENGR-LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504
GD + + LV + +++PIL + D +E Q++ CG P SLR++R
Sbjct: 381 EGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRH 440
Query: 505 GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVG 564
G+ + ++ + + WTVR + D + +++++SFV T VL +G +VTDS G
Sbjct: 441 GLEVSEMA-VSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-G 498
Query: 565 FRPDVCTLACGLVADGLLVQIHQNAVR 591
F TL+C L+ D LVQ++ + +R
Sbjct: 499 FLGTTPTLSCSLLGDDALVQVYPDGIR 525
Score = 97 (39.2 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 38/144 (26%), Positives = 61/144 (42%)
Query: 32 YLAKCVLKGSVVLQVA-HGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGT 89
+L L+ + + A HG+ ++V + +EL+ + G V ++ VFG
Sbjct: 2 FLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGV 61
Query: 90 IKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGN 149
I+ L F KD +VV SDSG++ L + + F + Q G
Sbjct: 62 IRSLMA------FRLTGGT---KDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGC 112
Query: 150 SRHQLGRMLAVDSSGCLIAVSAYE 173
R G+ LAVD G + +SA E
Sbjct: 113 RRIVPGQFLAVDPKGRAVMISAIE 136
Score = 94 (38.1 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
TR +G PV L + ++A+S R WL + + T +S++ A+ S +C
Sbjct: 691 TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQC 750
Query: 890 PKGILFVAENSLNL 903
P+GI+ ++ N+L +
Sbjct: 751 PEGIVAISTNTLRI 764
Score = 41 (19.5 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 763 YVLAGLRNGMLLR 775
Y+ GL+NG+LLR
Sbjct: 664 YLNIGLQNGVLLR 676
>UNIPROTKB|Q15393 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006461 "protein
complex assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005654 GO:GO:0006461
Reactome:REACT_1675 GO:GO:0003676 GO:GO:0000398 GO:GO:0071013
GO:GO:0030532 eggNOG:NOG247734 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942
OrthoDB:EOG4RV2QJ EMBL:AJ001443 EMBL:D87686 EMBL:D13642
EMBL:BC000463 EMBL:BC003146 EMBL:BC009780 EMBL:BC068974
EMBL:AL110251 IPI:IPI00179138 IPI:IPI00300371 IPI:IPI00828110
PIR:T14779 RefSeq:NP_036558.3 UniGene:Hs.514435
ProteinModelPortal:Q15393 DIP:DIP-28152N IntAct:Q15393
MINT:MINT-1402891 STRING:Q15393 PhosphoSite:Q15393 DMDM:116242787
PaxDb:Q15393 PeptideAtlas:Q15393 PRIDE:Q15393
Ensembl:ENST00000302516 GeneID:23450 KEGG:hsa:23450 UCSC:uc002ezf.3
GeneCards:GC16P070557 HGNC:HGNC:10770 HPA:HPA042986 MIM:605592
neXtProt:NX_Q15393 PharmGKB:PA35688 InParanoid:Q15393
PhylomeDB:Q15393 BindingDB:Q15393 ChEMBL:CHEMBL1250378
GenomeRNAi:23450 NextBio:45731 ArrayExpress:Q15393 Bgee:Q15393
CleanEx:HS_SAP130 CleanEx:HS_SF3B3 Genevestigator:Q15393
GermOnline:ENSG00000189091 Uniprot:Q15393
Length = 1217
Score = 227 (85.0 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 62/207 (29%), Positives = 103/207 (49%)
Query: 389 DKIP-KMVFCV-DTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAF-VE 445
D +P CV TG F + FG+ H +L + + G + E F SA +E
Sbjct: 331 DTVPVAAAMCVLKTG-FLFVASEFGN--H--YLYQIAHLGDDDE-----EPEFSSAMPLE 380
Query: 446 MGDGMVLKEENGR-LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504
GD + + LV + +++PIL + D +E Q++ CG P SLR++R
Sbjct: 381 EGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRH 440
Query: 505 GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVG 564
G+ + ++ + + WTVR + D + +++++SFV T VL +G +VTDS G
Sbjct: 441 GLEVSEMA-VSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-G 498
Query: 565 FRPDVCTLACGLVADGLLVQIHQNAVR 591
F TL+C L+ D LVQ++ + +R
Sbjct: 499 FLGTTPTLSCSLLGDDALVQVYPDGIR 525
Score = 97 (39.2 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 38/144 (26%), Positives = 61/144 (42%)
Query: 32 YLAKCVLKGSVVLQVA-HGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGT 89
+L L+ + + A HG+ ++V + +EL+ + G V ++ VFG
Sbjct: 2 FLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGV 61
Query: 90 IKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGN 149
I+ L F KD +VV SDSG++ L + + F + Q G
Sbjct: 62 IRSLMA------FRLTGGT---KDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGC 112
Query: 150 SRHQLGRMLAVDSSGCLIAVSAYE 173
R G+ LAVD G + +SA E
Sbjct: 113 RRIVPGQFLAVDPKGRAVMISAIE 136
Score = 94 (38.1 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
TR +G PV L + ++A+S R WL + + T +S++ A+ S +C
Sbjct: 691 TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQC 750
Query: 890 PKGILFVAENSLNL 903
P+GI+ ++ N+L +
Sbjct: 751 PEGIVAISTNTLRI 764
Score = 41 (19.5 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 763 YVLAGLRNGMLLR 775
Y+ GL+NG+LLR
Sbjct: 664 YLNIGLQNGVLLR 676
>MGI|MGI:1289341 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
MGI:MGI:1289341 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0071013 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
HSSP:Q16531 GO:GO:0005689 KO:K12830 HOGENOM:HOG000216677
OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ
EMBL:AK085705 EMBL:AK088268 EMBL:AK129035 EMBL:AK147914
EMBL:BC011412 EMBL:BC031197 EMBL:BC042580 IPI:IPI00122011
IPI:IPI00625759 RefSeq:NP_598714.1 UniGene:Mm.236123
ProteinModelPortal:Q921M3 IntAct:Q921M3 STRING:Q921M3
PhosphoSite:Q921M3 PaxDb:Q921M3 PRIDE:Q921M3
Ensembl:ENSMUST00000042012 GeneID:101943 KEGG:mmu:101943
UCSC:uc009nlc.1 InParanoid:Q921M3 NextBio:355190 Bgee:Q921M3
CleanEx:MM_SF3B3 Genevestigator:Q921M3 Uniprot:Q921M3
Length = 1217
Score = 227 (85.0 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 62/207 (29%), Positives = 103/207 (49%)
Query: 389 DKIP-KMVFCV-DTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAF-VE 445
D +P CV TG F + FG+ H +L + + G + E F SA +E
Sbjct: 331 DTVPVAAAMCVLKTG-FLFVASEFGN--H--YLYQIAHLGDDDE-----EPEFSSAMPLE 380
Query: 446 MGDGMVLKEENGR-LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504
GD + + LV + +++PIL + D +E Q++ CG P SLR++R
Sbjct: 381 EGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRH 440
Query: 505 GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVG 564
G+ + ++ + + WTVR + D + +++++SFV T VL +G +VTDS G
Sbjct: 441 GLEVSEMA-VSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-G 498
Query: 565 FRPDVCTLACGLVADGLLVQIHQNAVR 591
F TL+C L+ D LVQ++ + +R
Sbjct: 499 FLGTTPTLSCSLLGDDALVQVYPDGIR 525
Score = 97 (39.2 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 38/144 (26%), Positives = 61/144 (42%)
Query: 32 YLAKCVLKGSVVLQVA-HGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGT 89
+L L+ + + A HG+ ++V + +EL+ + G V ++ VFG
Sbjct: 2 FLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGV 61
Query: 90 IKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGN 149
I+ L F KD +VV SDSG++ L + + F + Q G
Sbjct: 62 IRSLMA------FRLTGGT---KDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGC 112
Query: 150 SRHQLGRMLAVDSSGCLIAVSAYE 173
R G+ LAVD G + +SA E
Sbjct: 113 RRIVPGQFLAVDPKGRAVMISAIE 136
Score = 94 (38.1 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
TR +G PV L + ++A+S R WL + + T +S++ A+ S +C
Sbjct: 691 TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQC 750
Query: 890 PKGILFVAENSLNL 903
P+GI+ ++ N+L +
Sbjct: 751 PEGIVAISTNTLRI 764
Score = 41 (19.5 bits), Expect = 9.3e-24, Sum P(4) = 9.3e-24
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 763 YVLAGLRNGMLLR 775
Y+ GL+NG+LLR
Sbjct: 664 YLNIGLQNGVLLR 676
>UNIPROTKB|F1P529 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 OMA:FDTIPVA
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00576925
Ensembl:ENSGALT00000003987 ArrayExpress:F1P529 Uniprot:F1P529
Length = 1228
Score = 228 (85.3 bits), Expect = 1.5e-23, Sum P(4) = 1.5e-23
Identities = 63/207 (30%), Positives = 103/207 (49%)
Query: 389 DKIP-KMVFCV-DTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAF-VE 445
D +P CV TG F + FG+ H +L + + G + E F SA +E
Sbjct: 331 DTVPVAAAMCVLKTG-FLFVASEFGN--H--YLYQIAHLGDDDE-----EPEFSSAMPLE 380
Query: 446 MGDGMVLKEENGR-LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504
GD + + LV + +++PIL + D +E Q++ CG P SLR++R
Sbjct: 381 EGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANEDTPQLYVACGRGPRSSLRVLRH 440
Query: 505 GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVG 564
G+ + ++ + + WTVR V D + +++++SFV T VL +G +VTDS G
Sbjct: 441 GLEVSEMA-VSELPGNPNAVWTVRRHVEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-G 498
Query: 565 FRPDVCTLACGLVADGLLVQIHQNAVR 591
F TL+C L+ D LVQ++ + +R
Sbjct: 499 FLGTTPTLSCSLLGDDALVQVYPDGIR 525
Score = 94 (38.1 bits), Expect = 1.5e-23, Sum P(4) = 1.5e-23
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
TR +G PV L + ++A+S R WL + + T +S++ A+ S +C
Sbjct: 691 TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQC 750
Query: 890 PKGILFVAENSLNL 903
P+GI+ ++ N+L +
Sbjct: 751 PEGIVAISTNTLRI 764
Score = 94 (38.1 bits), Expect = 1.5e-23, Sum P(4) = 1.5e-23
Identities = 38/144 (26%), Positives = 61/144 (42%)
Query: 32 YLAKCVLKGSVVLQVA-HGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGT 89
+L L+ + + A HG+ ++V + +EL+ + G V ++ VFG
Sbjct: 2 FLYNLTLQRATGISYAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGV 61
Query: 90 IKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGN 149
I+ L F KD +VV SDSG++ L + + F + Q G
Sbjct: 62 IRSLMA------FRLTGGT---KDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGC 112
Query: 150 SRHQLGRMLAVDSSGCLIAVSAYE 173
R G+ LAVD G + +SA E
Sbjct: 113 RRIVPGQYLAVDPKGRAVMISAIE 136
Score = 41 (19.5 bits), Expect = 1.5e-23, Sum P(4) = 1.5e-23
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 763 YVLAGLRNGMLLR 775
Y+ GL+NG+LLR
Sbjct: 664 YLNIGLQNGVLLR 676
>ZFIN|ZDB-GENE-040426-2901 [details] [associations]
symbol:sf3b3 "splicing factor 3b, subunit 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 ZFIN:ZDB-GENE-040426-2901 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450
HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ EMBL:BX784024 EMBL:BC047171
IPI:IPI00508652 RefSeq:NP_998668.1 RefSeq:XP_002667683.2
UniGene:Dr.76176 STRING:Q1LVE8 PRIDE:Q1LVE8
Ensembl:ENSDART00000008310 Ensembl:ENSDART00000122831
Ensembl:ENSDART00000129666 Ensembl:ENSDART00000147743
GeneID:100334114 GeneID:406824 KEGG:dre:100334114 KEGG:dre:406824
InParanoid:Q1LVE8 NextBio:20818331 Bgee:Q1LVE8 Uniprot:Q1LVE8
Length = 1217
Score = 221 (82.9 bits), Expect = 8.3e-23, Sum P(4) = 8.3e-23
Identities = 61/207 (29%), Positives = 103/207 (49%)
Query: 389 DKIP-KMVFCV-DTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAF-VE 445
D IP CV TG F + FG+ H +L + + G + E F SA +E
Sbjct: 331 DTIPVATAMCVLKTG-FLFVSSEFGN--H--YLYQIAHLGDDDE-----EPEFSSAMPLE 380
Query: 446 MGDGMVLKEENGR-LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504
GD + + LV ++++PI+ + D +E Q++ CG P +LR++R
Sbjct: 381 EGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLANEDTPQLYVACGRGPRSTLRVLRH 440
Query: 505 GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVG 564
G+ + ++ + + WTVR V D + +++++SFV T VL +G +VTDS G
Sbjct: 441 GLEVSEMA-VSELPGNPNAVWTVRRHVEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-G 498
Query: 565 FRPDVCTLACGLVADGLLVQIHQNAVR 591
F TL+C L+ + LVQ++ + +R
Sbjct: 499 FLGTTPTLSCSLLGEDALVQVYPDGIR 525
Score = 97 (39.2 bits), Expect = 8.3e-23, Sum P(4) = 8.3e-23
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
TR +G PV L + ++A+S R WL + + T +S++ +A+ S +C
Sbjct: 691 TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEYASGFASEQC 750
Query: 890 PKGILFVAENSLNL 903
P+GI+ ++ N+L +
Sbjct: 751 PEGIVAISTNTLRI 764
Score = 91 (37.1 bits), Expect = 8.3e-23, Sum P(4) = 8.3e-23
Identities = 33/127 (25%), Positives = 53/127 (41%)
Query: 48 HGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQN 106
HG+ ++V + +EL+ + G V ++ VFG ++ L F
Sbjct: 19 HGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFGVVRSLMA------FRLTG 72
Query: 107 SQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCL 166
KD +VV SDSG++ L + + F + Q G R G+ LAVD G
Sbjct: 73 GT---KDYVVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGRA 129
Query: 167 IAVSAYE 173
+ + A E
Sbjct: 130 VMIGATE 136
Score = 41 (19.5 bits), Expect = 8.3e-23, Sum P(4) = 8.3e-23
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 763 YVLAGLRNGMLLR 775
Y+ GL+NG+LLR
Sbjct: 664 YLNIGLQNGVLLR 676
Score = 38 (18.4 bits), Expect = 4.2e-17, Sum P(3) = 4.2e-17
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 760 DQFYVLAGLRNGMLL 774
D +YVL G+ M+L
Sbjct: 901 DDWYVLVGVARDMIL 915
>FB|FBgn0035162 [details] [associations]
symbol:CG13900 species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS;IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0007052 GO:GO:0022008
Gene3D:2.130.10.10 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 GO:GO:0005686 eggNOG:NOG247734 EMBL:BT021338
ProteinModelPortal:Q5BI86 SMR:Q5BI86 STRING:Q5BI86 PaxDb:Q5BI86
PRIDE:Q5BI86 FlyBase:FBgn0035162 InParanoid:Q5BI86
OrthoDB:EOG4B5MM0 ArrayExpress:Q5BI86 Bgee:Q5BI86 Uniprot:Q5BI86
Length = 1227
Score = 208 (78.3 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 58/203 (28%), Positives = 96/203 (47%)
Query: 392 PKMVFCV-DTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAF-VEMGDG 449
P CV TG F + FG+ H +L + + G E F SA +E G+
Sbjct: 335 PATAMCVLKTG-FLFVASEFGN--H--YLYQIAHLGDDDD-----EPEFSSAMPLEEGET 384
Query: 450 MVLKEENGR-LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISL 508
+ LV + + API+ V D +E Q++ CG P +LR++R G+ +
Sbjct: 385 FFFAPRALKNLVLVDELPSFAPIITSQVADLANEDTPQLYVLCGRGPRSTLRVLRHGLEV 444
Query: 509 EKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPD 568
++ + + WTV+ + D + +++++SFV T VL +G +VTDS GF
Sbjct: 445 SEMA-VSELPGNPNAVWTVKKRADDEFDAYIIVSFVNATLVLSIGETVEEVTDS-GFLGT 502
Query: 569 VCTLACGLVADGLLVQIHQNAVR 591
TL C + D LVQ++ + +R
Sbjct: 503 TPTLCCAALGDDALVQVYPDGIR 525
Score = 92 (37.4 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 36/144 (25%), Positives = 58/144 (40%)
Query: 32 YLAKCVL-KGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGT 89
YL L K + V HG+ +V+ + S+EL+ + G V ++ +FG
Sbjct: 2 YLYNLTLQKATGVTHAVHGNFSGGKQQEVLLSRGKSLELLRPDSNTGKVHTLLSTEIFGC 61
Query: 90 IKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGN 149
++ L F KD +VV SDSG++ L + + V Q G
Sbjct: 62 VRALMA------FRLTGGT---KDYIVVGSDSGRIVILEYNPSKNALEKVHQETFGKSGC 112
Query: 150 SRHQLGRMLAVDSSGCLIAVSAYE 173
R G+ A+D G + + A E
Sbjct: 113 RRIVPGQYFAIDPKGRAVMIGAVE 136
Score = 89 (36.4 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
TR +G PV L + ++A+S R WL ++ T +S++ +A+ S +C
Sbjct: 700 TRYLGSRPVKLFRIKMQGSEAVLAMSSRTWLSYYHQNRFHLTPLSYETLEYASGFSSEQC 759
Query: 890 PKGILFVAENSLNL 903
+GI+ ++ N+L +
Sbjct: 760 SEGIVAISTNTLRI 773
Score = 40 (19.1 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 763 YVLAGLRNGMLLRFEWPPDS 782
Y+ GL NG+LLR P S
Sbjct: 673 YLNIGLSNGVLLRTVLDPVS 692
>WB|WBGene00019323 [details] [associations]
symbol:teg-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0001703 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:FO081029 PIR:T32916
RefSeq:NP_491953.1 ProteinModelPortal:O44985 STRING:O44985
PaxDb:O44985 EnsemblMetazoa:K02F2.3 GeneID:172406
KEGG:cel:CELE_K02F2.3 UCSC:K02F2.3 CTD:172406 WormBase:K02F2.3
InParanoid:O44985 NextBio:875387 Uniprot:O44985
Length = 1220
Score = 193 (73.0 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 51/202 (25%), Positives = 92/202 (45%)
Query: 392 PKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSA--FVEMGDG 449
P C+ F + FG+ H+++ L +G + F SA F E
Sbjct: 336 PANALCILKSGFLFVAAEFGN--HELYQIASLGEGD--------DDEFSSAMGFGENDAA 385
Query: 450 MVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLE 509
E L+ + +++P+ D + D E Q+++ G SL+++R+G+ +
Sbjct: 386 FFEPHELKSLIPIDSMDSLSPLTDAVIGDIAREDAAQIYSLVGRGARSSLKVLRNGLEIS 445
Query: 510 KLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDV 569
++ + + WTV+ + D Y S++V+SFV T L +G + +DS GF P
Sbjct: 446 EMA-VSDLPGNPNAVWTVKKNIEDQYDSYIVVSFVNATLALTIGDTVEEASDS-GFLPTT 503
Query: 570 CTLACGLVADGLLVQIHQNAVR 591
T+ C ++ D LVQI+ +R
Sbjct: 504 PTIGCAMIGDDSLVQIYSEGIR 525
Score = 102 (41.0 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 36/145 (24%), Positives = 65/145 (44%)
Query: 32 YLAKCVLKG-SVVLQVAHGHLR-SPTSNDVVFGKETSIELVIIGE-DGIVQSVCEQAVFG 88
+L L+G S + Q G+ +P + ++V G+ +++EL+ + G ++ +C Q +FG
Sbjct: 2 HLYNLTLQGQSAINQAIQGNFSGTPKAQEIVVGRGSALELLTLDTVTGKIKVMCHQDIFG 61
Query: 89 TIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPG 148
++ L + A +D + V SDSG++ L + E F + Q G
Sbjct: 62 IVRSLLAF----RLTAGT-----RDFIAVGSDSGRIVILQYNAEKTCFERLHQETFGKTG 112
Query: 149 NSRHQLGRMLAVDSSGCLIAVSAYE 173
R G L D G + + A E
Sbjct: 113 CRRIVPGHFLVGDPRGRALMIGAVE 137
Score = 88 (36.0 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
TR +G PV L + + ++ S R WLL + T +S+ +A CS +C
Sbjct: 684 TRYLGTRPVKLFKVQCQGRSAILCTSSRSWLLYHFQRRFHLTPLSYANLEYAASFCSNQC 743
Query: 890 PKGILFVAENSLNL 903
+GI+ ++ ++L +
Sbjct: 744 SEGIVAISASTLRI 757
Score = 38 (18.4 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 710 IGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIP-QDVRLVLADQFYVLAGL 768
+GT +V ++S P + L L++ S+ I P +D + V A + GL
Sbjct: 607 LGTVDNAVRIISLDPNDMLMPLSTQSLPCPPESILLID--TPNEDGKGVAAVHLNI--GL 662
Query: 769 RNGMLLR 775
+NG L R
Sbjct: 663 QNGCLFR 669
Score = 37 (18.1 bits), Expect = 0.00090, Sum P(4) = 0.00090
Identities = 15/64 (23%), Positives = 24/64 (37%)
Query: 388 TDKIPKMVFCV---DTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFV 444
T K M F + + G+ F + + D + PP AL ++ FL
Sbjct: 293 THKTKNMYFFLVQAENGDIFKVTLETDEDLVSEMKLKYFDTVPPANALCILKSGFLFVAA 352
Query: 445 EMGD 448
E G+
Sbjct: 353 EFGN 356
>TAIR|locus:2127368 [details] [associations]
symbol:DDB1B "damaged DNA binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=RCA]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0007062 "sister
chromatid cohesion" evidence=RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0010162 "seed
dormancy process" evidence=RCA] [GO:0010431 "seed maturation"
evidence=RCA] [GO:0010564 "regulation of cell cycle process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 EMBL:AL161554 GO:GO:0003677 GO:GO:0006281
GO:GO:0009793 GO:GO:0016567 GO:GO:0009585 EMBL:AL021960
UniGene:At.32663 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
ProtClustDB:CLSN2685347 EMBL:AK220648 EMBL:AK229805 IPI:IPI00536598
PIR:T04941 RefSeq:NP_193842.1 ProteinModelPortal:O49552 SMR:O49552
DIP:DIP-46981N IntAct:O49552 STRING:O49552 PaxDb:O49552
PRIDE:O49552 EnsemblPlants:AT4G21100.1 GeneID:827857
KEGG:ath:AT4G21100 GeneFarm:4661 TAIR:At4g21100 InParanoid:O49552
OMA:DRPAVIY PhylomeDB:O49552 Genevestigator:O49552
GermOnline:AT4G21100 Uniprot:O49552
Length = 1088
Score = 235 (87.8 bits), Expect = 2.7e-19, Sum P(4) = 2.7e-19
Identities = 59/209 (28%), Positives = 109/209 (52%)
Query: 467 NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWT 526
N+ PI+D VVD + + Q+ C G +GSLRI+R+GI + + + + QGI G W+
Sbjct: 347 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE--QASVELQGIKGMWS 404
Query: 527 VRMKVSDPYHSFLVLSFVEETRVLRVGL-NFTDVTDSVGFRPDVCTLACGLVADGLLVQI 585
++ + + + +FLV+SF+ ETR+L + + + + T+ GF +V TL C LVQ+
Sbjct: 405 LKSSIDEAFDTFLVVSFISETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQV 464
Query: 586 HQNAVRLCMPTMVAHSGGIPLSYPVCTSW-FPEHVSISLGAVAHNMIIVSTSNPCFLFIL 644
N+VRL T + + W P S+++ + ++++T ++
Sbjct: 465 TSNSVRLVSST----------TRELRNKWDAPAGFSVNVATANASQVLLATGGGHLVY-- 512
Query: 645 GVRSLSVSHYEIYEMQHMRLQSELSCISI 673
L + + E++H+ L+ E+SC+ I
Sbjct: 513 ----LEIGDGTLTEVKHVLLEYEVSCLDI 537
Score = 78 (32.5 bits), Expect = 2.7e-19, Sum P(4) = 2.7e-19
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 833 IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKG 892
+G P+ L S + A SDRP ++ + L Y++++ + +H P S P
Sbjct: 625 LGTRPITLRTFSSKSATHVFAASDRPAVIYSNNKKLLYSNVNLKEVSHMCPFNSAAFPDS 684
Query: 893 ILFVAENSLNL 903
+ E L +
Sbjct: 685 LAIAREGELTI 695
Score = 57 (25.1 bits), Expect = 2.7e-19, Sum P(4) = 2.7e-19
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 39 KGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTI 90
K + V G+ SP +++ K T IE+ ++ G+ Q++ + ++G I
Sbjct: 12 KPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGL-QTILDVPLYGRI 62
Score = 42 (19.8 bits), Expect = 2.7e-19, Sum P(4) = 2.7e-19
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 730 VLASGSIVLTNTMGTAISGCIPQDVRLVLADQF-YVLAGLRNGMLLRFE 777
VL +++ +G I IP+ V L + Y+L L +G LL F+
Sbjct: 564 VLPDLTLITKEELGGEI---IPRSVLLCAFEGISYLLCALGDGHLLNFQ 609
>RGD|1311636 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR004871
Pfam:PF03178 RGD:1311636 GO:GO:0005634 GO:GO:0003676
IPI:IPI00563335 PRIDE:F1LSZ9 Ensembl:ENSRNOT00000044193
UCSC:RGD:1311636 ArrayExpress:F1LSZ9 Uniprot:F1LSZ9
Length = 902
Score = 227 (85.0 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 62/207 (29%), Positives = 103/207 (49%)
Query: 389 DKIP-KMVFCV-DTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAF-VE 445
D +P CV TG F + FG+ H +L + + G + E F SA +E
Sbjct: 111 DTVPVAAAMCVLKTG-FLFVASEFGN--H--YLYQIAHLGDDDE-----EPEFSSAMPLE 160
Query: 446 MGDGMVLKEENGR-LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504
GD + + LV + +++PIL + D +E Q++ CG P SLR++R
Sbjct: 161 EGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRH 220
Query: 505 GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVG 564
G+ + ++ + + WTVR + D + +++++SFV T VL +G +VTDS G
Sbjct: 221 GLEVSEMA-VSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-G 278
Query: 565 FRPDVCTLACGLVADGLLVQIHQNAVR 591
F TL+C L+ D LVQ++ + +R
Sbjct: 279 FLGTTPTLSCSLLGDDALVQVYPDGIR 305
Score = 94 (38.1 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
TR +G PV L + ++A+S R WL + + T +S++ A+ S +C
Sbjct: 471 TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQC 530
Query: 890 PKGILFVAENSLNL 903
P+GI+ ++ N+L +
Sbjct: 531 PEGIVAISTNTLRI 544
Score = 41 (19.5 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 763 YVLAGLRNGMLLR 775
Y+ GL+NG+LLR
Sbjct: 444 YLNIGLQNGVLLR 456
>UNIPROTKB|E9PT66 [details] [associations]
symbol:Sf3b3 "Protein Sf3b3" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
RGD:1311636 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 IPI:IPI00958853
Ensembl:ENSRNOT00000023854 ArrayExpress:E9PT66 Uniprot:E9PT66
Length = 920
Score = 227 (85.0 bits), Expect = 7.4e-19, Sum P(3) = 7.4e-19
Identities = 62/207 (29%), Positives = 103/207 (49%)
Query: 389 DKIP-KMVFCV-DTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAF-VE 445
D +P CV TG F + FG+ H +L + + G + E F SA +E
Sbjct: 34 DTVPVAAAMCVLKTG-FLFVASEFGN--H--YLYQIAHLGDDDE-----EPEFSSAMPLE 83
Query: 446 MGDGMVLKEENGR-LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504
GD + + LV + +++PIL + D +E Q++ CG P SLR++R
Sbjct: 84 EGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRH 143
Query: 505 GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVG 564
G+ + ++ + + WTVR + D + +++++SFV T VL +G +VTDS G
Sbjct: 144 GLEVSEMA-VSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-G 201
Query: 565 FRPDVCTLACGLVADGLLVQIHQNAVR 591
F TL+C L+ D LVQ++ + +R
Sbjct: 202 FLGTTPTLSCSLLGDDALVQVYPDGIR 228
Score = 94 (38.1 bits), Expect = 7.4e-19, Sum P(3) = 7.4e-19
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
TR +G PV L + ++A+S R WL + + T +S++ A+ S +C
Sbjct: 394 TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQC 453
Query: 890 PKGILFVAENSLNL 903
P+GI+ ++ N+L +
Sbjct: 454 PEGIVAISTNTLRI 467
Score = 41 (19.5 bits), Expect = 7.4e-19, Sum P(3) = 7.4e-19
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 763 YVLAGLRNGMLLR 775
Y+ GL+NG+LLR
Sbjct: 367 YLNIGLQNGVLLR 379
>TAIR|locus:2115909 [details] [associations]
symbol:DDB1A "damaged DNA binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA;IPI] [GO:0010100
"negative regulation of photomorphogenesis" evidence=IGI;RCA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0003002 "regionalization"
evidence=RCA] [GO:0006281 "DNA repair" evidence=RCA] [GO:0006486
"protein glycosylation" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0033043 "regulation of organelle organization" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0048449 "floral
organ formation" evidence=RCA] [GO:0048608 "reproductive structure
development" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005829
GO:GO:0005634 GO:GO:0045892 EMBL:CP002687 GenomeReviews:CT486007_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003677 GO:GO:0006281
GO:GO:0016567 GO:GO:0009585 EMBL:AL161503 GO:GO:0080008
GO:GO:0010100 EMBL:AY074257 EMBL:BT001905 EMBL:AK230366
IPI:IPI00548104 PIR:B85068 RefSeq:NP_192451.1 UniGene:At.32663
UniGene:At.47587 ProteinModelPortal:Q9M0V3 DIP:DIP-40455N
IntAct:Q9M0V3 STRING:Q9M0V3 PaxDb:Q9M0V3 PRIDE:Q9M0V3 ProMEX:Q9M0V3
EnsemblPlants:AT4G05420.1 GeneID:825890 KEGG:ath:AT4G05420
GeneFarm:4660 TAIR:At4g05420 eggNOG:NOG247734 HOGENOM:HOG000007241
InParanoid:Q9M0V3 KO:K10610 OMA:CALGDGS PhylomeDB:Q9M0V3
ProtClustDB:CLSN2685347 Genevestigator:Q9M0V3 GermOnline:AT4G05420
Uniprot:Q9M0V3
Length = 1088
Score = 235 (87.8 bits), Expect = 8.5e-19, Sum P(4) = 8.5e-19
Identities = 59/209 (28%), Positives = 108/209 (51%)
Query: 467 NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWT 526
N+ PI+D VVD + + Q+ C G +GSLR++R+GI + + + + QGI G W+
Sbjct: 347 NLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLRVVRNGIGINE--QASVELQGIKGMWS 404
Query: 527 VRMKVSDPYHSFLVLSFVEETRVLRVGL-NFTDVTDSVGFRPDVCTLACGLVADGLLVQI 585
++ + + + +FLV+SF+ ETR+L + L + + T+ GF V TL C LVQ+
Sbjct: 405 LKSSIDEAFDTFLVVSFISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQV 464
Query: 586 HQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEHVSISLGAVAHNMIIVSTSNPCFLFIL 644
N+VRL T + + W P ++++ + ++++T ++
Sbjct: 465 TSNSVRLVSST----------TRELRDEWHAPAGFTVNVATANASQVLLATGGGHLVY-- 512
Query: 645 GVRSLSVSHYEIYEMQHMRLQSELSCISI 673
L + ++ E+QH L+ E+SC+ I
Sbjct: 513 ----LEIGDGKLTEVQHALLEYEVSCLDI 537
Score = 82 (33.9 bits), Expect = 8.5e-19, Sum P(4) = 8.5e-19
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 833 IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKG 892
+G P+ L S + A SDRP ++ ++ L Y++++ + +H P S P
Sbjct: 625 LGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 684
Query: 893 ILFVAENSLNL 903
+ E L +
Sbjct: 685 LAIAREGELTI 695
Score = 50 (22.7 bits), Expect = 8.5e-19, Sum P(4) = 8.5e-19
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDL 93
G+ SP +++ K T IE+ ++ G+ Q + + ++G I L
Sbjct: 22 GNFTSPQELNLIVAKCTRIEIHLLTPQGL-QPMLDVPIYGRIATL 65
Score = 41 (19.5 bits), Expect = 6.9e-18, Sum P(4) = 6.9e-18
Identities = 23/93 (24%), Positives = 37/93 (39%)
Query: 309 HNPSCVYRTSL-NFLPPALEEQNFVDESC---RVHDVDDEGL---FNV---AACALLELR 358
H P+ V + + NF P +E N + C +H + +GL +V A LEL
Sbjct: 11 HKPTSVTHSCVGNFTSP--QELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLEL- 67
Query: 359 DYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKI 391
+ P D C W+PE+ ++
Sbjct: 68 -FRPHGEAQDFLFIATERYKFCVLQWDPESSEL 99
Score = 40 (19.1 bits), Expect = 8.5e-19, Sum P(4) = 8.5e-19
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 750 IPQDVRLVLADQF-YVLAGLRNGMLLRFE 777
IP+ V L + Y+L L +G LL F+
Sbjct: 581 IPRSVLLCAFEGISYLLCALGDGHLLNFQ 609
>UNIPROTKB|F1RIE2 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
EMBL:CU462918 RefSeq:XP_003122699.1 Ensembl:ENSSSCT00000014314
GeneID:100522239 KEGG:ssc:100522239 Uniprot:F1RIE2
Length = 1140
Score = 234 (87.4 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 70/235 (29%), Positives = 114/235 (48%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL V+ P + + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPQG 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + N ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSNQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI 543
Score = 73 (30.8 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L I L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 676 VNYMCPLNSDGYPDS-LALANNS 697
Score = 59 (25.8 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G I AV+ + F +
Sbjct: 21 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKI---AVM---ELFRPKGES 73
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 74 ---KDLLFILTAKYNACILEYKQSGESIDIITRAH----GNVQDRIGR 114
Score = 38 (18.4 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 242 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 268
>FB|FBgn0260962 [details] [associations]
symbol:pic "piccolo" species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0035220 "wing disc development"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0007307 "eggshell
chorion gene amplification" evidence=IDA] [GO:0007095 "mitotic G2
DNA damage checkpoint" evidence=IGI] InterPro:IPR004871
Pfam:PF03178 UniPathway:UPA00143 EMBL:AE014297 GO:GO:0005634
GO:GO:0005737 GO:GO:0007095 GO:GO:0043161 GO:GO:0003677
GO:GO:0006281 GO:GO:0035220 GO:GO:0042787 GO:GO:0007307
eggNOG:NOG247734 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
HSSP:Q16531 EMBL:AF132145 RefSeq:NP_650257.1 UniGene:Dm.3215
ProteinModelPortal:Q9XYZ5 SMR:Q9XYZ5 STRING:Q9XYZ5 PaxDb:Q9XYZ5
PRIDE:Q9XYZ5 EnsemblMetazoa:FBtr0082709 GeneID:41611
KEGG:dme:Dmel_CG7769 UCSC:CG7769-RA CTD:41611 FlyBase:FBgn0260962
InParanoid:Q9XYZ5 OrthoDB:EOG4S1RP0 PhylomeDB:Q9XYZ5
GenomeRNAi:41611 NextBio:824642 Bgee:Q9XYZ5 Uniprot:Q9XYZ5
Length = 1140
Score = 223 (83.6 bits), Expect = 4.8e-18, Sum P(3) = 4.8e-18
Identities = 65/231 (28%), Positives = 113/231 (48%)
Query: 427 PPCKALLWVEGRFLSAFVEMGDGMVLKEENGRL--VYTSPIQN---IAPILDMSVVDYHD 481
P C + +++ FL GD +++ + + Y P++N +APILD++VVD
Sbjct: 310 PEC--ITYLDNGFLYIGARHGDSQLVRLNSEAIDGSYVVPVENFTNLAPILDIAVVDLDR 367
Query: 482 EKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSD-PYHSFLV 540
+ + Q+ C G +GSLRIIR GI +++ GI G W++++ V + PY + LV
Sbjct: 368 QGQGQIITCSGSFKDGSLRIIRIGIGIQE--HACIDLPGIKGMWSLKVGVDESPYENTLV 425
Query: 541 LSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAH 600
L+FV TR+L + + T+ GF D+ T C V L+Q+ ++VRL A
Sbjct: 426 LAFVGHTRILTLSGEEVEETEIPGFASDLQTFLCSNVDYDQLIQVTSDSVRLVSSATKA- 484
Query: 601 SGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSV 651
+ W P ++G V+ N + ++ C +F + + S+
Sbjct: 485 ---------LVAEWRPTG-DRTIGVVSCNTTQILVASACDIFYIVIEDGSL 525
Score = 68 (29.0 bits), Expect = 4.8e-18, Sum P(3) = 4.8e-18
Identities = 31/145 (21%), Positives = 66/145 (45%)
Query: 31 HYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTI 90
HY+ K + V+ G+ SPT +++ + +E+ ++ +G+ + + E + GTI
Sbjct: 4 HYVVTAQ-KPTAVVACLTGNFTSPTDLNLIIARNNQVEIDLVTPEGL-RPLKEININGTI 61
Query: 91 KDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLA--FCNEMHRFFPVAQVHLSNPG 148
AV+ + F +S KDLL +++ + L N++ A ++S+
Sbjct: 62 ---AVM---RHFRPPDSN---KDLLFILTRRYNVMILEARMVNDVITVVTKANGNVSDSV 112
Query: 149 NSRHQLGRMLAVDSSGCLIAVSAYE 173
+ G + A+D +I + Y+
Sbjct: 113 GIPSEGGVIAAIDPKARVIGMCLYQ 137
Score = 67 (28.6 bits), Expect = 4.8e-18, Sum P(3) = 4.8e-18
Identities = 14/71 (19%), Positives = 33/71 (46%)
Query: 833 IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKG 892
+G P L ++ A SDRP ++ ++ H L +++++ + H + + P
Sbjct: 630 LGTQPTTLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNHMCSLNAQAYPDS 689
Query: 893 ILFVAENSLNL 903
+ +N++ L
Sbjct: 690 LALANKNAVIL 700
>UNIPROTKB|Q5R649 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9601
"Pongo abelii" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:CR860647
RefSeq:NP_001126613.1 UniGene:Pab.18111 GeneID:100173610
KEGG:pon:100173610 InParanoid:Q5R649 Uniprot:Q5R649
Length = 1140
Score = 229 (85.7 bits), Expect = 4.9e-18, Sum P(4) = 4.9e-18
Identities = 69/235 (29%), Positives = 114/235 (48%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL V+ P + + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPQA 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI 543
Score = 73 (30.8 bits), Expect = 4.9e-18, Sum P(4) = 4.9e-18
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L I L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 676 VNYMCPLNSDGYPDS-LALANNS 697
Score = 61 (26.5 bits), Expect = 4.9e-18, Sum P(4) = 4.9e-18
Identities = 24/108 (22%), Positives = 49/108 (45%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G I AV+ + F +
Sbjct: 21 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKI---AVM---ELFRPKGES 73
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ + L + + + H GN + ++GR
Sbjct: 74 ---KDLLFILTAKYNVCILEYKQSGESIDIITRAH----GNVQDRIGR 114
Score = 38 (18.4 bits), Expect = 4.9e-18, Sum P(4) = 4.9e-18
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 242 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 268
>DICTYBASE|DDB_G0282569 [details] [associations]
symbol:sf3b3 "splicing factor 3B subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA;ISS] [GO:0006461 "protein
complex assembly" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=IEA;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 dictyBase:DDB_G0282569 GO:GO:0006461 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0030532 eggNOG:NOG247734 KO:K12830 OMA:FDTIPVA
RefSeq:XP_640132.1 STRING:Q54SA7 EnsemblProtists:DDB0233171
GeneID:8623669 KEGG:ddi:DDB_G0282569 ProtClustDB:CLSZ2729005
Uniprot:Q54SA7
Length = 1256
Score = 158 (60.7 bits), Expect = 5.4e-18, Sum P(3) = 5.4e-18
Identities = 44/143 (30%), Positives = 72/143 (50%)
Query: 454 EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLR 513
EE L TS + +++PI+D V+D E+ Q+++ CG SL+++R G+S+ +
Sbjct: 403 EELKNLEPTSHLSSLSPIIDFKVLDLVREENPQLYSLCGTGLNSSLKVLRHGLSVTTIT- 461
Query: 514 TAPIYQGI-TGTWTVRMKVS----DPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPD 568
TA + G+ +G WTV S D ++V+SFV T VL VG + +S G
Sbjct: 462 TANL-PGVPSGIWTVPKSTSPNAIDQTDKYIVVSFVGTTSVLSVGDTIQENHES-GILET 519
Query: 569 VCTLACGLVADGLLVQIHQNAVR 591
TL + D ++Q+ R
Sbjct: 520 TTTLLVKSMGDDAIIQVFPTGFR 542
Score = 122 (48.0 bits), Expect = 5.4e-18, Sum P(3) = 5.4e-18
Identities = 40/143 (27%), Positives = 67/143 (46%)
Query: 32 YLAKCVL-KGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTI 90
YL L + + V Q G+ ++V S+EL+ E+G +QSV VFG +
Sbjct: 2 YLYNLTLQRPTSVYQSISGNFSGTKQVEIVLNHGRSLELIRYDENGKMQSVLYTEVFGIV 61
Query: 91 KDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNS 150
+ +++P F + KD ++V SDSG++ L + ++ ++F + Q G
Sbjct: 62 R--SIIP----FRLTSGT---KDYIIVGSDSGRVVILEYNSQKNQFDKIHQETFGRSGCR 112
Query: 151 RHQLGRMLAVDSSGCLIAVSAYE 173
R G+ LAVD G + A E
Sbjct: 113 RIVPGQYLAVDPKGRAFMIGAIE 135
Score = 82 (33.9 bits), Expect = 5.4e-18, Sum P(3) = 5.4e-18
Identities = 25/97 (25%), Positives = 47/97 (48%)
Query: 805 IRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTA 864
+++G+ ++ +S + L I TR +G PV L + M+ALS R WL
Sbjct: 707 LKNGVVKRATLDS---VTGELSDIRTRLLGRKPVKLFKVKVRGSNAMLALSSRVWLNYIN 763
Query: 865 RHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSL 901
+ L +S +P +A+ + S + + I+ +EN +
Sbjct: 764 QGKLDIVPLSIEPLENASNLSSEQSAESIVATSENKI 800
>UNIPROTKB|J9NVR7 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AAEX03011677
Ensembl:ENSCAFT00000049486 Uniprot:J9NVR7
Length = 1084
Score = 229 (85.7 bits), Expect = 5.9e-18, Sum P(4) = 5.9e-18
Identities = 69/235 (29%), Positives = 114/235 (48%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL V+ P + + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPQG 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI 543
Score = 73 (30.8 bits), Expect = 5.9e-18, Sum P(4) = 5.9e-18
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L I L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 676 VNYMCPLNSDGYPDS-LALANNS 697
Score = 59 (25.8 bits), Expect = 5.9e-18, Sum P(4) = 5.9e-18
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G I AV+ + F +
Sbjct: 21 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKI---AVM---ELFRPKGES 73
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 74 ---KDLLFILTAKYNACILEYKQSGESIDIITRAH----GNVQDRIGR 114
Score = 38 (18.4 bits), Expect = 5.9e-18, Sum P(4) = 5.9e-18
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 242 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 268
>UNIPROTKB|F5GY55 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:2717 ChiTaRS:DDB1
EMBL:AP003037 IPI:IPI00977083 SMR:F5GY55 Ensembl:ENST00000540166
Uniprot:F5GY55
Length = 1092
Score = 229 (85.7 bits), Expect = 6.2e-18, Sum P(4) = 6.2e-18
Identities = 69/235 (29%), Positives = 114/235 (48%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL V+ P + + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPQA 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI 543
Score = 73 (30.8 bits), Expect = 6.2e-18, Sum P(4) = 6.2e-18
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L I L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 676 VNYMCPLNSDGYPDS-LALANNS 697
Score = 59 (25.8 bits), Expect = 6.2e-18, Sum P(4) = 6.2e-18
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G I AV+ + F +
Sbjct: 21 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKI---AVM---ELFRPKGES 73
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 74 ---KDLLFILTAKYNACILEYKQSGESIDIITRAH----GNVQDRIGR 114
Score = 38 (18.4 bits), Expect = 6.2e-18, Sum P(4) = 6.2e-18
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 242 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 268
>GENEDB_PFALCIPARUM|PFL1680w [details] [associations]
symbol:PFL1680w "splicing factor 3b, subunit 3,
130kD, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 175 (66.7 bits), Expect = 6.9e-18, Sum P(4) = 6.9e-18
Identities = 40/137 (29%), Positives = 72/137 (52%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKL----LRT 514
L I +++PILDM ++D + Q++ CG P SLRI++ G+S+E+L L
Sbjct: 427 LYLVDQIYSLSPILDMKIIDAKNTHTPQIYTLCGRGPRSSLRILQHGLSIEELADNELPG 486
Query: 515 APIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLAC 574
P Y WT++ Y ++V+SF T +L +G + +V+D++ +V TL
Sbjct: 487 KPKY-----IWTIKKDNLSEYDGYIVVSFEGNTLILEIGESVEEVSDTLLLN-NVTTLHI 540
Query: 575 GLVADGLLVQIHQNAVR 591
++ D +Q++ +R
Sbjct: 541 NILYDNSFIQVYDTGIR 557
Score = 114 (45.2 bits), Expect = 6.9e-18, Sum P(4) = 6.9e-18
Identities = 34/135 (25%), Positives = 61/135 (45%)
Query: 39 KGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPW 98
K + + + +G+ P ++++ K +EL+ + G + + + +FG I+ ++
Sbjct: 11 KPTAITKTVYGNFSGPRFHEIIVAKGQVLELLRSDKQGKLNVIISKDIFGIIRSIST--- 67
Query: 99 NKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRML 158
F S KD +V+ SDSG+L L + NE + F V G R G +
Sbjct: 68 ---FRLTGSN---KDYIVIGSDSGRLVILEYNNEKNDFVRVHCETYGKTGIRRIIPGEYI 121
Query: 159 AVDSSGCLIAVSAYE 173
AVD G + + A E
Sbjct: 122 AVDPKGRALMICAVE 136
Score = 65 (27.9 bits), Expect = 6.9e-18, Sum P(4) = 6.9e-18
Identities = 12/74 (16%), Positives = 38/74 (51%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
++ +G + + P++ + + ++ L ++ +L + Y+ +++ +A+ S +C
Sbjct: 718 SKYLGAKSIKICPVNVNKNPALLVLCEKTYLCYMHQGKFLYSPLNYDMLEYASSFYSPQC 777
Query: 890 PKGILFVAENSLNL 903
G + ++ NSL +
Sbjct: 778 SDGYVAISSNSLRI 791
Score = 52 (23.4 bits), Expect = 6.9e-18, Sum P(4) = 6.9e-18
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 610 VCTSWF-PEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSEL 668
V W P++ I + + I++S S ++ + SH + E+ L E+
Sbjct: 563 VVQEWVAPKNKQIKAASSNSSQIVISLSGGELIYF----EIDESH-TLVEIFRKNLNVEV 617
Query: 669 SCISIPQKHPER 680
C+SI Q P R
Sbjct: 618 LCLSIQQIPPNR 629
Score = 44 (20.5 bits), Expect = 9.0e-16, Sum P(4) = 9.0e-16
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 718 EVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFE 777
E+++ + K L +S I+ + MGT I IP D + ++ + L ++LR E
Sbjct: 1212 EIVTSMQKVRLSPTSSECIIYSTIMGT-IGAFIPYDNK----EELELTQHLE--IILRTE 1264
Query: 778 WPP 780
PP
Sbjct: 1265 KPP 1267
>UNIPROTKB|Q8I574 [details] [associations]
symbol:PFL1680w "Splicing factor 3b, subunit 3, 130kD,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 175 (66.7 bits), Expect = 6.9e-18, Sum P(4) = 6.9e-18
Identities = 40/137 (29%), Positives = 72/137 (52%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKL----LRT 514
L I +++PILDM ++D + Q++ CG P SLRI++ G+S+E+L L
Sbjct: 427 LYLVDQIYSLSPILDMKIIDAKNTHTPQIYTLCGRGPRSSLRILQHGLSIEELADNELPG 486
Query: 515 APIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLAC 574
P Y WT++ Y ++V+SF T +L +G + +V+D++ +V TL
Sbjct: 487 KPKY-----IWTIKKDNLSEYDGYIVVSFEGNTLILEIGESVEEVSDTLLLN-NVTTLHI 540
Query: 575 GLVADGLLVQIHQNAVR 591
++ D +Q++ +R
Sbjct: 541 NILYDNSFIQVYDTGIR 557
Score = 114 (45.2 bits), Expect = 6.9e-18, Sum P(4) = 6.9e-18
Identities = 34/135 (25%), Positives = 61/135 (45%)
Query: 39 KGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPW 98
K + + + +G+ P ++++ K +EL+ + G + + + +FG I+ ++
Sbjct: 11 KPTAITKTVYGNFSGPRFHEIIVAKGQVLELLRSDKQGKLNVIISKDIFGIIRSIST--- 67
Query: 99 NKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRML 158
F S KD +V+ SDSG+L L + NE + F V G R G +
Sbjct: 68 ---FRLTGSN---KDYIVIGSDSGRLVILEYNNEKNDFVRVHCETYGKTGIRRIIPGEYI 121
Query: 159 AVDSSGCLIAVSAYE 173
AVD G + + A E
Sbjct: 122 AVDPKGRALMICAVE 136
Score = 65 (27.9 bits), Expect = 6.9e-18, Sum P(4) = 6.9e-18
Identities = 12/74 (16%), Positives = 38/74 (51%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
++ +G + + P++ + + ++ L ++ +L + Y+ +++ +A+ S +C
Sbjct: 718 SKYLGAKSIKICPVNVNKNPALLVLCEKTYLCYMHQGKFLYSPLNYDMLEYASSFYSPQC 777
Query: 890 PKGILFVAENSLNL 903
G + ++ NSL +
Sbjct: 778 SDGYVAISSNSLRI 791
Score = 52 (23.4 bits), Expect = 6.9e-18, Sum P(4) = 6.9e-18
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 610 VCTSWF-PEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSEL 668
V W P++ I + + I++S S ++ + SH + E+ L E+
Sbjct: 563 VVQEWVAPKNKQIKAASSNSSQIVISLSGGELIYF----EIDESH-TLVEIFRKNLNVEV 617
Query: 669 SCISIPQKHPER 680
C+SI Q P R
Sbjct: 618 LCLSIQQIPPNR 629
Score = 44 (20.5 bits), Expect = 9.0e-16, Sum P(4) = 9.0e-16
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 718 EVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFE 777
E+++ + K L +S I+ + MGT I IP D + ++ + L ++LR E
Sbjct: 1212 EIVTSMQKVRLSPTSSECIIYSTIMGT-IGAFIPYDNK----EELELTQHLE--IILRTE 1264
Query: 778 WPP 780
PP
Sbjct: 1265 KPP 1267
>UNIPROTKB|A1A4K3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9913
"Bos taurus" [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin
ligase complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0000075 "cell cycle checkpoint" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0042787 GO:GO:0000075 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
EMBL:BC126629 IPI:IPI00713891 RefSeq:NP_001073731.1
UniGene:Bt.62917 STRING:A1A4K3 PRIDE:A1A4K3
Ensembl:ENSBTAT00000028740 GeneID:511951 KEGG:bta:511951 CTD:1642
GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460 InParanoid:A1A4K3
OrthoDB:EOG4KPT91 NextBio:20870176 Uniprot:A1A4K3
Length = 1140
Score = 229 (85.7 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 69/235 (29%), Positives = 114/235 (48%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL V+ P + + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPQG 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI 543
Score = 73 (30.8 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L I L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 676 VNYMCPLNSDGYPDS-LALANNS 697
Score = 59 (25.8 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G I AV+ + F +
Sbjct: 21 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKI---AVM---ELFRPKGES 73
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 74 ---KDLLFILTAKYNACILEYKQSGESIDIITRAH----GNVQDRIGR 114
Score = 38 (18.4 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 242 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 268
>UNIPROTKB|E2R9E3 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS CTD:1642
GeneTree:ENSGT00530000063396 EMBL:AAEX03011677 RefSeq:XP_533275.2
Ensembl:ENSCAFT00000025824 GeneID:476067 KEGG:cfa:476067
NextBio:20851798 Uniprot:E2R9E3
Length = 1140
Score = 229 (85.7 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 69/235 (29%), Positives = 114/235 (48%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL V+ P + + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPQG 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI 543
Score = 73 (30.8 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L I L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 676 VNYMCPLNSDGYPDS-LALANNS 697
Score = 59 (25.8 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G I AV+ + F +
Sbjct: 21 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKI---AVM---ELFRPKGES 73
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 74 ---KDLLFILTAKYNACILEYKQSGESIDIITRAH----GNVQDRIGR 114
Score = 38 (18.4 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 242 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 268
>UNIPROTKB|Q16531 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000075 "cell cycle checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IDA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=IDA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 EMBL:U32986
GO:GO:0005737 GO:GO:0019048 GO:GO:0005654 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003684 EMBL:CH471076
GO:GO:0042787 GO:GO:0000075 GO:GO:0000718 EMBL:AP003108
GO:GO:0031464 PDB:2HYE PDB:4A0K PDBsum:2HYE PDBsum:4A0K PDB:4A0L
PDBsum:4A0L GO:GO:0031465 PDB:3I7P PDBsum:3I7P PDB:3I8C PDBsum:3I8C
PDB:3I89 PDBsum:3I89 PDB:3I7O PDBsum:3I7O PDB:3I8E PDBsum:3I8E
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
CTD:1642 HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 EMBL:U18299
EMBL:L40326 EMBL:AJ002955 EMBL:AK312436 EMBL:AY960579 EMBL:BC011686
EMBL:BC050530 EMBL:BC051764 IPI:IPI00293464 PIR:I38908
RefSeq:NP_001914.3 UniGene:Hs.290758 PDB:2B5L PDB:2B5M PDB:2B5N
PDB:3E0C PDB:3EI1 PDB:3EI2 PDB:3EI3 PDB:3EI4 PDB:3I7H PDB:3I7K
PDB:3I7L PDB:3I7N PDB:4A08 PDB:4A09 PDB:4A0A PDB:4A0B PDB:4A11
PDB:4E54 PDB:4E5Z PDBsum:2B5L PDBsum:2B5M PDBsum:2B5N PDBsum:3E0C
PDBsum:3EI1 PDBsum:3EI2 PDBsum:3EI3 PDBsum:3EI4 PDBsum:3I7H
PDBsum:3I7K PDBsum:3I7L PDBsum:3I7N PDBsum:4A08 PDBsum:4A09
PDBsum:4A0A PDBsum:4A0B PDBsum:4A11 PDBsum:4E54 PDBsum:4E5Z
ProteinModelPortal:Q16531 SMR:Q16531 DIP:DIP-430N IntAct:Q16531
MINT:MINT-1134697 STRING:Q16531 PhosphoSite:Q16531 PaxDb:Q16531
PRIDE:Q16531 Ensembl:ENST00000301764 GeneID:1642 KEGG:hsa:1642
UCSC:uc001nrc.4 GeneCards:GC11M061066 H-InvDB:HIX0171380
HGNC:HGNC:2717 HPA:CAB032821 MIM:600045 neXtProt:NX_Q16531
PharmGKB:PA27187 InParanoid:Q16531 ChiTaRS:DDB1
EvolutionaryTrace:Q16531 GenomeRNAi:1642 NextBio:6750
ArrayExpress:Q16531 Bgee:Q16531 CleanEx:HS_DDB1
Genevestigator:Q16531 GermOnline:ENSG00000167986 Uniprot:Q16531
Length = 1140
Score = 229 (85.7 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 69/235 (29%), Positives = 114/235 (48%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL V+ P + + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPQA 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI 543
Score = 73 (30.8 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L I L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 676 VNYMCPLNSDGYPDS-LALANNS 697
Score = 59 (25.8 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G I AV+ + F +
Sbjct: 21 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKI---AVM---ELFRPKGES 73
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 74 ---KDLLFILTAKYNACILEYKQSGESIDIITRAH----GNVQDRIGR 114
Score = 38 (18.4 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 242 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 268
>MGI|MGI:1202384 [details] [associations]
symbol:Ddb1 "damage specific DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISO] [GO:0031465 "Cul4B-RING ubiquitin ligase complex"
evidence=ISO] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 MGI:MGI:1202384 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 KO:K10610 OMA:CALGDGS
CTD:1642 GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460
HSSP:Q16531 ChiTaRS:DDB1 EMBL:AB026432 EMBL:AF159853 EMBL:AK146522
EMBL:AK152228 EMBL:AK154303 EMBL:AK155020 EMBL:AK155920
EMBL:AK157491 EMBL:BC002210 EMBL:BC009661 IPI:IPI00316740
PIR:JC7152 RefSeq:NP_056550.1 UniGene:Mm.289915 UniGene:Mm.466856
ProteinModelPortal:Q3U1J4 SMR:Q3U1J4 IntAct:Q3U1J4 STRING:Q3U1J4
PaxDb:Q3U1J4 PRIDE:Q3U1J4 Ensembl:ENSMUST00000025649 GeneID:13194
KEGG:mmu:13194 UCSC:uc008gqm.1 InParanoid:Q3U1J4 NextBio:283320
Bgee:Q3U1J4 CleanEx:MM_DDB1 Genevestigator:Q3U1J4 Uniprot:Q3U1J4
Length = 1140
Score = 228 (85.3 bits), Expect = 9.9e-18, Sum P(4) = 9.9e-18
Identities = 69/235 (29%), Positives = 113/235 (48%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPGRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL V+ P + + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPQG 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI 543
Score = 73 (30.8 bits), Expect = 9.9e-18, Sum P(4) = 9.9e-18
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L I L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 676 VNYMCPLNSDGYPDS-LALANNS 697
Score = 59 (25.8 bits), Expect = 9.9e-18, Sum P(4) = 9.9e-18
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G I AV+ + F +
Sbjct: 21 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKI---AVM---ELFRPKGES 73
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 74 ---KDLLFILTAKYNACILEYKQSGESIDIITRAH----GNVQDRIGR 114
Score = 38 (18.4 bits), Expect = 9.9e-18, Sum P(4) = 9.9e-18
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 242 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 268
>UNIPROTKB|F1NVV3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00821712 Ensembl:ENSGALT00000040604
ArrayExpress:F1NVV3 Uniprot:F1NVV3
Length = 1119
Score = 233 (87.1 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 73/235 (31%), Positives = 112/235 (47%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 308 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 367
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 368 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVEE 425
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ GF D T CG VA L+QI +VRL V+ P + + + W P
Sbjct: 426 TELTGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPNG 475
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + N ++V+ L+ L +R + EM+H E++C+ I
Sbjct: 476 KNISVASCNSNQVVVAVGRA--LYYLEIRPQELRQINCTEMEH-----EVACLDI 523
Score = 72 (30.4 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L + L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 596 LSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 655
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 656 VNYMCPLNSDGYPDS-LALANNS 677
Score = 54 (24.1 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 23/108 (21%), Positives = 47/108 (43%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G AV+ + F +
Sbjct: 1 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKT---AVM---ELFRPKGES 53
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 54 ---KDLLFILTAKYNACILEYKQNGDNIDIITRAH----GNVQDRIGR 94
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 167 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 221
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 222 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 248
>UNIPROTKB|F1P4I8 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00818299 Ensembl:ENSGALT00000008352
ArrayExpress:F1P4I8 Uniprot:F1P4I8
Length = 1120
Score = 233 (87.1 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 73/235 (31%), Positives = 112/235 (47%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 308 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 367
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 368 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVEE 425
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ GF D T CG VA L+QI +VRL V+ P + + + W P
Sbjct: 426 TELTGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPNG 475
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + N ++V+ L+ L +R + EM+H E++C+ I
Sbjct: 476 KNISVASCNSNQVVVAVGRA--LYYLEIRPQELRQINCTEMEH-----EVACLDI 523
Score = 72 (30.4 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L + L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 596 LSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 655
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 656 VNYMCPLNSDGYPDS-LALANNS 677
Score = 54 (24.1 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 23/108 (21%), Positives = 47/108 (43%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G AV+ + F +
Sbjct: 1 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKT---AVM---ELFRPKGES 53
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 54 ---KDLLFILTAKYNACILEYKQNGDNIDIITRAH----GNVQDRIGR 94
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 167 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 221
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 222 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 248
>UNIPROTKB|F1NVV2 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA]
[GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 OMA:CALGDGS GeneTree:ENSGT00530000063396
IPI:IPI00597295 EMBL:AADN02017118 EMBL:AADN02017119
Ensembl:ENSGALT00000040605 ArrayExpress:F1NVV2 Uniprot:F1NVV2
Length = 1123
Score = 233 (87.1 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 73/235 (31%), Positives = 112/235 (47%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 308 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 367
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 368 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVEE 425
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ GF D T CG VA L+QI +VRL V+ P + + + W P
Sbjct: 426 TELTGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPNG 475
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + N ++V+ L+ L +R + EM+H E++C+ I
Sbjct: 476 KNISVASCNSNQVVVAVGRA--LYYLEIRPQELRQINCTEMEH-----EVACLDI 523
Score = 72 (30.4 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L + L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 596 LSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 655
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 656 VNYMCPLNSDGYPDS-LALANNS 677
Score = 54 (24.1 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 23/108 (21%), Positives = 47/108 (43%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G AV+ + F +
Sbjct: 1 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKT---AVM---ELFRPKGES 53
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 54 ---KDLLFILTAKYNACILEYKQNGDNIDIITRAH----GNVQDRIGR 94
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 167 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 221
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 222 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 248
>UNIPROTKB|Q805F9 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0080008
"Cul4-RING ubiquitin ligase complex" evidence=ISS] [GO:0031465
"Cul4B-RING ubiquitin ligase complex" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005737 GO:GO:0005654
GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0016567 Reactome:REACT_115612 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 CTD:1642
HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 HSSP:Q16531 EMBL:AB074298
EMBL:AJ719779 IPI:IPI00597295 RefSeq:NP_989547.1 UniGene:Gga.12977
STRING:Q805F9 PRIDE:Q805F9 GeneID:374050 KEGG:gga:374050
NextBio:20813572 Uniprot:Q805F9
Length = 1140
Score = 233 (87.1 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 73/235 (31%), Positives = 112/235 (47%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ GF D T CG VA L+QI +VRL V+ P + + + W P
Sbjct: 446 TELTGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPNG 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + N ++V+ L+ L +R + EM+H E++C+ I
Sbjct: 496 KNISVASCNSNQVVVAVGRA--LYYLEIRPQELRQINCTEMEH-----EVACLDI 543
Score = 72 (30.4 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L + L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 676 VNYMCPLNSDGYPDS-LALANNS 697
Score = 54 (24.1 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 23/108 (21%), Positives = 47/108 (43%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G AV+ + F +
Sbjct: 21 GHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKT---AVM---ELFRPKGES 73
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 74 ---KDLLFILTAKYNACILEYKQNGDNIDIITRAH----GNVQDRIGR 114
Score = 38 (18.4 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 242 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 268
>UNIPROTKB|F5H6C5 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909008
ProteinModelPortal:F5H6C5 SMR:F5H6C5 Ensembl:ENST00000535967
ArrayExpress:F5H6C5 Bgee:F5H6C5 Uniprot:F5H6C5
Length = 272
Score = 222 (83.2 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 64/208 (30%), Positives = 104/208 (50%)
Query: 467 NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWT 526
N+ PI+DM VVD + + Q+ C G EGSLRIIR+GI + + + GI G W
Sbjct: 6 NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHE--HASIDLPGIKGLWP 63
Query: 527 VRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIH 586
+R + LVLSFV +TRVL + + T+ +GF D T CG VA L+QI
Sbjct: 64 LRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQIT 123
Query: 587 QNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEHVSISLGAVAHNMIIVSTSNPCFLFILG 645
+VRL V+ P + + + W P+ +IS+ + + ++V+ +
Sbjct: 124 SASVRL-----VSQE---PKA--LVSEWKEPQAKNISVASCNSSQVVVAVGRALYY---- 169
Query: 646 VRSLSVSHYEIYEMQHMRLQSELSCISI 673
L + E+ ++ H ++ E++C+ I
Sbjct: 170 ---LQIHPQELRQISHTEMEHEVACLDI 194
>RGD|621889 [details] [associations]
symbol:Ddb1 "damage-specific DNA binding protein 1, 127kDa"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IMP]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA;ISO] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin
ligase complex" evidence=IEA;ISO;ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=IEA;ISO;ISS] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IEA;ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process"
evidence=IEA;ISO;ISS] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO;ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 RGD:621889 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 HOGENOM:HOG000007241
HOVERGEN:HBG005460 HSSP:Q16531 EMBL:AJ277077 IPI:IPI00324451
UniGene:Rn.8402 IntAct:Q9ESW0 MINT:MINT-4784948 STRING:Q9ESW0
PhosphoSite:Q9ESW0 PRIDE:Q9ESW0 UCSC:RGD:621889 InParanoid:Q9ESW0
ArrayExpress:Q9ESW0 Genevestigator:Q9ESW0 Uniprot:Q9ESW0
Length = 1140
Score = 224 (83.9 bits), Expect = 4.2e-17, Sum P(4) = 4.2e-17
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 454 EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLR 513
E+ +V N+ PI+DM VVD + + Q+ C G EGSLRIIR+GI + +
Sbjct: 342 EQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHE--H 399
Query: 514 TAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLA 573
+ GI G W +R + LVLSFV +TRVL + + T+ +GF D T
Sbjct: 400 ASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFF 459
Query: 574 CGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEHVSISLGAVAHNMII 632
CG VA L+QI +VRL V+ P + + + W P +IS+ + + ++
Sbjct: 460 CGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPRAKNISVASCNSSQVV 509
Query: 633 VSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
V+ + L + E+ ++ H ++ E++C+ +
Sbjct: 510 VAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDV 543
Score = 71 (30.1 bits), Expect = 4.2e-17, Sum P(4) = 4.2e-17
Identities = 18/86 (20%), Positives = 40/86 (46%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L I L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENSLNL 903
+ P+ S P + ++L +
Sbjct: 676 VNYMCPLNSDGYPDSLALANTSTLTI 701
Score = 59 (25.8 bits), Expect = 4.2e-17, Sum P(4) = 4.2e-17
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ ++ +G+ + V E ++G I AV+ + F +
Sbjct: 21 GHFTSAEDINLLIAKNTRLEIYVVTAEGL-RPVKEVGMYGKI---AVM---ELFRPKGES 73
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 74 ---KDLLFILTAKYNACILEYKQSGESIDIITRAH----GNVQDRIGR 114
Score = 38 (18.4 bits), Expect = 4.2e-17, Sum P(4) = 4.2e-17
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 242 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 268
>ZFIN|ZDB-GENE-040426-1272 [details] [associations]
symbol:ddb1 "damage specific DNA binding protein
1" species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 ZFIN:ZDB-GENE-040426-1272
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:JQ692623
UniGene:Dr.77970 Uniprot:I1XUS8
Length = 1140
Score = 220 (82.5 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 75/264 (28%), Positives = 126/264 (47%)
Query: 417 VHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLK---EENGRLVYTSPIQ---NIAP 470
+H+ E L + + L +++ + +GD ++K + N + Y ++ N+ P
Sbjct: 300 LHV-ELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVGVMETFTNLGP 358
Query: 471 ILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMK 530
I+DM VVD + + Q+ C G EGSLRIIR+GI + + + GI G W +R +
Sbjct: 359 IVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHE--HASIDLPGIKGLWPLRSE 416
Query: 531 VSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAV 590
S LVLSFV +TRVL + + T+ GF + T CG VA L+QI +V
Sbjct: 417 SSRDTDDMLVLSFVGQTRVLMLSGEEVEETELQGFVDNQQTFFCGNVAHQQLIQITSVSV 476
Query: 591 RLCMPTMVAHSGGIPLSYPVCTSWF-PEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSL 649
RL V S + + W P+ +IS+ + + ++++ L+ L + S
Sbjct: 477 RL-----VTQD-----SKALVSEWKEPQGRNISVASCNNTQVVLAVGR--VLYYLQILSG 524
Query: 650 SVSHYEIYEMQHMRLQSELSCISI 673
+ EM+H E++C+ I
Sbjct: 525 ELKQISSTEMEH-----EVACLDI 543
Score = 73 (30.8 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 20/83 (24%), Positives = 41/83 (49%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L I +++ R+ +G P L +++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LDIQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 676 VNYMCPLNSEGYPDS-LALANNS 697
Score = 54 (24.1 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 24/108 (22%), Positives = 47/108 (43%)
Query: 49 GHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108
GH S +++ K T +E+ + +G+ + V E ++G I AV+ + F +
Sbjct: 21 GHFTSAEDLNLLIAKNTRLEIYAVTAEGL-RPVKEVGMYGKI---AVM---ELFRPKGES 73
Query: 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
KDLL +++ L + + + H GN + ++GR
Sbjct: 74 ---KDLLFILTAKYNACILEYKQSGDSIDIITRAH----GNVQDRIGR 114
Score = 41 (19.5 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 718 EVLSFVPKEGLRVLASGSIVLTN-------TMGTAISGCIPQDVRLV--LADQFY-VLAG 767
EV F E + V + GS+VL N T G+ + G + + LV L++ +Y +L
Sbjct: 994 EVGLFHLGEFVNVFSHGSLVLQNLGESSTPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLD 1053
Query: 768 LRN 770
L+N
Sbjct: 1054 LQN 1056
>UNIPROTKB|Q6P6Z0 [details] [associations]
symbol:ddb1 "DNA damage-binding protein 1" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:BC061946
RefSeq:NP_001083624.1 UniGene:Xl.23906 PRIDE:Q6P6Z0 GeneID:399026
KEGG:xla:399026 Xenbase:XB-GENE-967911 Uniprot:Q6P6Z0
Length = 1140
Score = 218 (81.8 bits), Expect = 2.4e-16, Sum P(4) = 2.4e-16
Identities = 57/153 (37%), Positives = 78/153 (50%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLTTESNEQGSYVVVMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R+ LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRVAADRDTDDTLVLSFVGQTRVLTLTGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRL 592
TD GF D T CG VA L+QI +VRL
Sbjct: 446 TDLAGFVDDQQTFFCGNVAHQQLIQITSASVRL 478
Score = 71 (30.1 bits), Expect = 2.4e-16, Sum P(4) = 2.4e-16
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 833 IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKG 892
+G P L ++ A SDRP ++ ++ H L +++++ + + P+ S P
Sbjct: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSEGYPDS 690
Query: 893 ILFVAENS 900
L +A NS
Sbjct: 691 -LALANNS 697
Score = 59 (25.8 bits), Expect = 2.4e-16, Sum P(4) = 2.4e-16
Identities = 26/118 (22%), Positives = 51/118 (43%)
Query: 39 KGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPW 98
K + V GH S +++ K T +E+ ++ +G+ + V E ++G I AV+
Sbjct: 11 KPTAVNACVTGHFTSEDDLNLLIAKNTRLEIYVVTPEGL-RPVKEVGMYGKI---AVM-- 64
Query: 99 NKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
+ F + KDLL +++ L + + + H GN + ++GR
Sbjct: 65 -ELFRPKGES---KDLLFILTAKYNACILEYKQSGDSIDIITRAH----GNVQDRIGR 114
Score = 49 (22.3 bits), Expect = 3.8e-14, Sum P(4) = 3.8e-14
Identities = 26/117 (22%), Positives = 49/117 (41%)
Query: 750 IPQDVRLV-LADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSG 808
IP+ + + Y+L L +G L F D+ + S + T T RS
Sbjct: 587 IPRSILMTSFESSHYLLCALGDGALFYFSLNTDTGLLSDRKKVTLGTQPTVLRT--FRS- 643
Query: 809 IAATSSFESKDELPI----NLQLIATRRIGITPV-FLVPLSDSLDADMIALSDRPWL 860
++ T+ F D + N +L+ + + + V ++ PL+ D +AL++ L
Sbjct: 644 LSTTNVFACSDRPTVIYSSNHKLVFSN-VNLKEVNYMCPLNSEGYPDSLALANNSTL 699
Score = 37 (18.1 bits), Expect = 2.4e-16, Sum P(4) = 2.4e-16
Identities = 17/78 (21%), Positives = 30/78 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFSKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFV 332
+L PP +++ V
Sbjct: 242 GDKYLAIAPPIIKQSTIV 259
>UNIPROTKB|P33194 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9534
"Chlorocebus aethiops" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING
ubiquitin ligase complex" evidence=ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=ISS] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281 GO:GO:0016567
GO:GO:0031464 GO:GO:0031465 HOVERGEN:HBG005460 EMBL:L20216
PIR:S38777 PRIDE:P33194 Uniprot:P33194
Length = 1140
Score = 229 (85.7 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 69/235 (29%), Positives = 114/235 (48%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL V+ P + + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRL-----VSQE---PKA--LVSEWKEPQA 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI 543
Score = 73 (30.8 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 821 LPINLQLIATRR---IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP 877
L I L++ R+ +G P L ++ A SDRP ++ ++ H L +++++ +
Sbjct: 616 LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKE 675
Query: 878 STHATPVCSVECPKGILFVAENS 900
+ P+ S P L +A NS
Sbjct: 676 VNYMCPLNSDGYPDS-LALANNS 697
Score = 38 (18.4 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
G +++ + +S+ F GP VE S A G A+++ S Y
Sbjct: 187 GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIG-----QESITYHN 241
Query: 318 SLNFL---PPALEEQNFVDESCRVHDVDDEG 345
+L PP +++ V C + VD G
Sbjct: 242 GDKYLAIAPPIIKQSTIV---CH-NRVDPNG 268
>POMBASE|SPAPJ698.03c [details] [associations]
symbol:prp12 "U2 snRNP-associated protein Sap130
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000245
"spliceosomal complex assembly" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0030620 "U2 snRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 PomBase:SPAPJ698.03c EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0005681 GO:GO:0007049 GO:GO:0000245 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG247734 GO:GO:0030620 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA OrthoDB:EOG4FR40R EMBL:AB034966
RefSeq:NP_594414.1 IntAct:Q9UTT2 STRING:Q9UTT2
EnsemblFungi:SPAPJ698.03c.1 GeneID:2543278 KEGG:spo:SPAPJ698.03c
NextBio:20804299 Uniprot:Q9UTT2
Length = 1206
Score = 148 (57.2 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 33/107 (30%), Positives = 56/107 (52%)
Query: 485 DQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFV 544
+Q++ CG SLR +R G+ +++ + + WT+++ +D Y S+++LSF
Sbjct: 446 NQLYTVCGRGSNSSLRQLRRGLETTEIV-ASELPGAPIAIWTLKLNQTDVYDSYIILSFT 504
Query: 545 EETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVR 591
T VL +G +++DS GF V TL + LVQIH +R
Sbjct: 505 NGTLVLSIGETVEEISDS-GFLSSVSTLNARQMGRDSLVQIHPKGIR 550
Score = 96 (38.9 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 830 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889
TR +G V + P++ ++A+S R +L + + +L + I++ HA+ S +C
Sbjct: 709 TRFLGPRAVKIYPITMKNQNTVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQC 768
Query: 890 PKGILFVAENSLNL 903
P+GI+ + +N+L +
Sbjct: 769 PEGIVAIQKNTLKI 782
Score = 96 (38.9 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 31/124 (25%), Positives = 57/124 (45%)
Query: 51 LRSPTSNDVVFGKETSIELVII-GEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQV 109
L + ++V E+ + + + DG + + Q FG I+++A + F
Sbjct: 28 LSGKKAQEIVIATESRLLIYKVDATDGRMNCILNQNCFGIIRNVAPLRLTG-FK------ 80
Query: 110 MGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAV 169
+D LVV SDSG+++ L + E ++ P+ Q G R G LA+D+ G +
Sbjct: 81 --RDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRRVVPGEYLAIDAKGRAAMI 138
Query: 170 SAYE 173
++ E
Sbjct: 139 ASVE 142
Score = 49 (22.3 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 750 IPQDVRLVLA--DQFYVLAGLRNGMLLRFEWPPD 781
+PQDV +V + + ++ L NG L+ FE D
Sbjct: 563 LPQDVYVVQSAINDMQIVVALSNGELVYFEMSDD 596
Score = 39 (18.8 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 23/76 (30%), Positives = 34/76 (44%)
Query: 343 DEGLFNVAACALLELRDYDPMCIDSDSGN-AKEPSKHVCSWSWEPE---TDKIPKMVFCV 398
D G N AL E+ DY ID DS A S+ V S+ +E + + + V
Sbjct: 180 DTGYANPIFAAL-EV-DYSE--IDHDSTREAFTSSEKVLSY-YELDLGLNHVVKRWSKVV 234
Query: 399 DTGEFFMIEIAFGSDG 414
D + +I + G+DG
Sbjct: 235 DRNSYMLIPVPGGNDG 250
Score = 39 (18.8 bits), Expect = 5.6e-15, Sum P(5) = 5.6e-15
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 745 AISGCI-PQDVRLVLADQFYVLAGLRNGMLLR 775
A S CI P +V V Y+ GL NG+ LR
Sbjct: 665 ANSLCIIPMNVNGV--STLYLHIGLMNGVYLR 694
Score = 37 (18.1 bits), Expect = 9.1e-16, Sum P(5) = 9.1e-16
Identities = 19/68 (27%), Positives = 26/68 (38%)
Query: 243 ILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALL 302
IL R+ A N + WN V S GPL V F ++ + GD L
Sbjct: 276 ILRRQAASANAIS-TPWN------QVNSNSANDGPLIVSAVLHKMKGSFFYLLQTGDGDL 328
Query: 303 MDLRDPHN 310
+ L H+
Sbjct: 329 LKLTIEHD 336
>ASPGD|ASPL0000031473 [details] [associations]
symbol:AN5452 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380
Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0007049 EMBL:BN001305 EMBL:AACD01000094 eggNOG:NOG247734
KO:K12830 RefSeq:XP_663056.1 STRING:Q5B1X8 GeneID:2871744
KEGG:ani:AN5452.2 HOGENOM:HOG000216677 OMA:FDTIPVA
OrthoDB:EOG4FR40R Uniprot:Q5B1X8
Length = 1209
Score = 169 (64.5 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 50/219 (22%), Positives = 102/219 (46%)
Query: 455 ENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRT 514
EN LV I ++ P++D VV+ ++ Q+F G + R ++ G+ + +++ +
Sbjct: 409 ENLNLV--EAINSLNPLVDSKVVNISEDDAPQIFTVSGTGARSTFRTLKHGLEVSEIVES 466
Query: 515 APIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLAC 574
+ + WT ++ +D + +++VLSF T VL +G +VTD+ GF TLA
Sbjct: 467 E-LPSVPSAVWTTKLTRADEFDAYIVLSFANGTLVLSIGETVEEVTDT-GFLSSAPTLAV 524
Query: 575 GLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVS 634
+ + L+QIH +R + + +P P+H SI A + V+
Sbjct: 525 QQLGEDSLIQIHPRGIRHILADRRVNE------WPA-----PQHRSIVAAATNERQVAVA 573
Query: 635 TSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
S+ ++ S++ Y+ + ++ ++C+S+
Sbjct: 574 LSSGEIVYFELDADGSLAEYD----ERRQMSGTVTCLSL 608
Score = 90 (36.7 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 34/98 (34%), Positives = 49/98 (50%)
Query: 76 GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHR 135
G V + Q VFG I+ LA F S KD +++ SDSG+++ + + +R
Sbjct: 54 GKVIPLYTQDVFGIIRTLAA------FRLAGSN---KDYIIIGSDSGRITIIEYVPSQNR 104
Query: 136 FFPVAQVHLSNPGNS--RHQL-GRMLAVDSSG--CLIA 168
F ++HL G S R + G+ LAVD G CLIA
Sbjct: 105 F---NRIHLETFGKSGVRRVVPGQYLAVDPKGRACLIA 139
Score = 63 (27.2 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 22/87 (25%), Positives = 37/87 (42%)
Query: 819 DELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWL--LQTARHSLAYTSISFQ 876
DE+ L TR +G V L +S + ++ALS RPWL T T + +
Sbjct: 688 DEVTGELSDTRTRFLGSKAVKLFQVSVTGQTAVLALSSRPWLGYSDTQTKGFMLTPLDYV 747
Query: 877 PSTHATPVCSVECPKGILFVAENSLNL 903
S +C +G++ + +L +
Sbjct: 748 GLEWGWNFSSEQCVEGMVGIQGQNLRI 774
>DICTYBASE|DDB_G0286013 [details] [associations]
symbol:repE "UV-damaged DNA binding protein1"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;ISS;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA;IEP]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 Pfam:PF03178
UniPathway:UPA00143 dictyBase:DDB_G0286013 GO:GO:0005634
GO:GO:0005737 GenomeReviews:CM000153_GR SUPFAM:SSF50978
GO:GO:0003684 GO:GO:0016567 EMBL:AAFI02000085 GO:GO:0006289
eggNOG:NOG247734 KO:K10610 OMA:CALGDGS EMBL:U50042 PIR:S71092
RefSeq:XP_637896.2 STRING:B0M0P5 EnsemblProtists:DDB0191144
GeneID:8625406 KEGG:ddi:DDB_G0286013 ProtClustDB:CLSZ2430134
Uniprot:B0M0P5
Length = 1181
Score = 106 (42.4 bits), Expect = 3.2e-12, Sum P(4) = 3.2e-12
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518
+ Y NI P++D VVD + + Q+ C G +GSLRIIR+GI + + + +
Sbjct: 378 VTYLEAFTNIGPVVDFCVVDAEKQGQAQIVTCSGTYRDGSLRIIRNGIGIAE--QASIEL 435
Query: 519 QGITGTWTV 527
+GI G + +
Sbjct: 436 EGIKGIFPI 444
Score = 93 (37.8 bits), Expect = 3.2e-12, Sum P(4) = 3.2e-12
Identities = 31/137 (22%), Positives = 62/137 (45%)
Query: 37 VLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVV 96
V K + V G+ P +++ K T IE+ ++ +DG+ + + + ++G I L
Sbjct: 8 VQKPTSVTHSVTGNFTGPNDKNLIISKCTKIEIFLMDQDGL-KPMFDVNIYGRISVL--- 63
Query: 97 PWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGR 156
K F+ S+ +D L + ++S K LA+ E A + + + G+
Sbjct: 64 ---KLFSVAGSK---QDYLFISTESFKFCILAYDYEKKEIITKASGNAEDTIGRPTEAGQ 117
Query: 157 MLAVDSSGCLIAVSAYE 173
+ +D G ++A+ YE
Sbjct: 118 LGIIDPDGRIVALHLYE 134
Score = 78 (32.5 bits), Expect = 3.2e-12, Sum P(4) = 3.2e-12
Identities = 34/145 (23%), Positives = 61/145 (42%)
Query: 531 VSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVAD-GLLVQIHQNA 589
++D +L+ SF+E T+VL + T+ G + TL CG + LL+QI +
Sbjct: 469 ITDSKDRYLITSFIECTKVLSFQGEEIEETEFEGLESNCSTLYCGTIDKLNLLIQITNVS 528
Query: 590 VRLCMPTMVAHSGGIPLSYPVCTSWFPEHVS-ISLGAVAHNMIIVSTSNPCFLFILGVRS 648
+ L ++ + W E I+L + + I++S F + +
Sbjct: 529 INLIDSN----------TFKRVSQWNVEPSRRINLVSTNQDQIVLSIDKSLLYFQINSSN 578
Query: 649 LSVSHYEIYEMQHMRLQSELSCISI 673
S+ + E+ H E+SCI I
Sbjct: 579 KSIQLVKEIELPH-----EISCIDI 598
Score = 74 (31.1 bits), Expect = 3.2e-12, Sum P(4) = 3.2e-12
Identities = 34/148 (22%), Positives = 63/148 (42%)
Query: 764 VLAGLRNGMLLR-FEWPPDSNI---P--SSVAPIHSPISATFRNTENIRSGIAATSSFES 817
V GL N + LR F+ P I P + P S + +F + + I + F+
Sbjct: 612 VSVGLWNDITLRIFKLPTLEEIWKEPLGGEILP-RSILMISFDSIDYIFCSLGDGHLFKF 670
Query: 818 KDELPINLQLIATRRI--GITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISF 875
+ + + +L R++ G P+ L ++ A+SDRP ++ + L Y+ ++
Sbjct: 671 QFDFS-SFKLFDKRKLTLGTQPIILKKFKLKNTINIFAISDRPTVIYSHNKKLFYSVVNL 729
Query: 876 QPSTHATPVCSVECPKGILFVAENSLNL 903
+ T+ T S P + NSL +
Sbjct: 730 KDVTNVTSFNSDGFPNSMAIATTNSLTI 757
>WB|WBGene00010890 [details] [associations]
symbol:ddb-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0030163
"protein catabolic process" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004871 Pfam:PF03178 UniPathway:UPA00143
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005737
GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0006281
GO:GO:0040011 GO:GO:0016567 GO:GO:0007049 GO:GO:0040035
InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163 GO:GO:0007276
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855 PIR:T23798
RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
Length = 1134
Score = 141 (54.7 bits), Expect = 3.1e-07, Sum P(5) = 3.1e-07
Identities = 55/238 (23%), Positives = 110/238 (46%)
Query: 446 MGDGMVLK---EENGRL--VYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLR 500
+GD +++ E NG V NI PI DM +V+ + + Q+ C G +GSLR
Sbjct: 325 LGDSQLIRLMTEPNGGSYSVILETYSNIGPIRDMVMVE--SDGQPQLVTCTGADKDGSLR 382
Query: 501 IIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRV-GLNFTDV 559
+IR+GI +++L G+ G + +R+ + +++++S +ET VL++ G DV
Sbjct: 383 VIRNGIGIDELASVD--LAGVVGIFPIRLDSNAD--NYVIVSLSDETHVLQITGEELEDV 438
Query: 560 TDSVGFRPDVCTL-ACGLVA---DGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF 615
+ D+ T+ A L G+++Q + +RL S G+ +
Sbjct: 439 K-LLEINTDLPTIFASTLFGPNDSGIILQATEKQIRLMS------SSGLSKFWEPTNGEI 491
Query: 616 PEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
VS++ A+ I+++ + +L V + +I + ++E++C+ +
Sbjct: 492 ISKVSVN---AANGQIVLAARDTVYLLTCIVDEMGA--LDIQLTAEKKFENEIACLDL 544
Score = 75 (31.5 bits), Expect = 3.1e-07, Sum P(5) = 3.1e-07
Identities = 37/178 (20%), Positives = 85/178 (47%)
Query: 33 LAKCVL--KGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTI 90
++ CV K SVV++ G+ + +++ + I++ ++ +G+ ++VCE ++G +
Sbjct: 3 ISYCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEGL-KNVCEIPIYGQV 61
Query: 91 KDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNP-GN 149
+A+V + + ++S L+V+++ ++ LA+ + + A +++P G
Sbjct: 62 LTIALVKCKR--DKRHS-------LIVVTEKWHMAILAYRDG--KVVTRAAGCIADPTGR 110
Query: 150 SRHQLGRMLAVDSSGCLIAVSAYEDRXXXXXXXXXXXXDIIDKKICYPSESE---VDT 204
+ L L + +G LIA+ A+E + + YP+ S+ VDT
Sbjct: 111 ATDNLFS-LTIHRNG-LIAIRAFEGSVKMIQWESGTDLRHFNVRFDYPNVSDFKFVDT 166
Score = 42 (19.8 bits), Expect = 3.1e-07, Sum P(5) = 3.1e-07
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 398 VDTGEFFMIEIAF-GSDGHKVHL 419
VDTGE + +AF D H HL
Sbjct: 164 VDTGEDDVYRVAFIYDDDHGKHL 186
Score = 40 (19.1 bits), Expect = 3.1e-07, Sum P(5) = 3.1e-07
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 833 IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSIS 874
+G P L + + + SDRP ++ +A L +++++
Sbjct: 633 VGTRPPSLHRVRNKNRQHLFVCSDRPVIIFSASKKLVFSNVN 674
Score = 39 (18.8 bits), Expect = 3.1e-07, Sum P(5) = 3.1e-07
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 873 ISFQPSTHATPVCS--VECPKGILFVAENSL 901
I++Q ST VCS E +F ++N+L
Sbjct: 726 IAYQKSTSTYGVCSNRTESKAERVFASKNAL 756
>UNIPROTKB|Q21554 [details] [associations]
symbol:ddb-1 "DNA damage-binding protein 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] InterPro:IPR004871 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0005737 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0006281 GO:GO:0040011 GO:GO:0016567 GO:GO:0007049
GO:GO:0040035 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163
GO:GO:0007276 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
OMA:CALGDGS GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855
PIR:T23798 RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
Length = 1134
Score = 141 (54.7 bits), Expect = 3.1e-07, Sum P(5) = 3.1e-07
Identities = 55/238 (23%), Positives = 110/238 (46%)
Query: 446 MGDGMVLK---EENGRL--VYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLR 500
+GD +++ E NG V NI PI DM +V+ + + Q+ C G +GSLR
Sbjct: 325 LGDSQLIRLMTEPNGGSYSVILETYSNIGPIRDMVMVE--SDGQPQLVTCTGADKDGSLR 382
Query: 501 IIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRV-GLNFTDV 559
+IR+GI +++L G+ G + +R+ + +++++S +ET VL++ G DV
Sbjct: 383 VIRNGIGIDELASVD--LAGVVGIFPIRLDSNAD--NYVIVSLSDETHVLQITGEELEDV 438
Query: 560 TDSVGFRPDVCTL-ACGLVA---DGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF 615
+ D+ T+ A L G+++Q + +RL S G+ +
Sbjct: 439 K-LLEINTDLPTIFASTLFGPNDSGIILQATEKQIRLMS------SSGLSKFWEPTNGEI 491
Query: 616 PEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
VS++ A+ I+++ + +L V + +I + ++E++C+ +
Sbjct: 492 ISKVSVN---AANGQIVLAARDTVYLLTCIVDEMGA--LDIQLTAEKKFENEIACLDL 544
Score = 75 (31.5 bits), Expect = 3.1e-07, Sum P(5) = 3.1e-07
Identities = 37/178 (20%), Positives = 85/178 (47%)
Query: 33 LAKCVL--KGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTI 90
++ CV K SVV++ G+ + +++ + I++ ++ +G+ ++VCE ++G +
Sbjct: 3 ISYCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEGL-KNVCEIPIYGQV 61
Query: 91 KDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNP-GN 149
+A+V + + ++S L+V+++ ++ LA+ + + A +++P G
Sbjct: 62 LTIALVKCKR--DKRHS-------LIVVTEKWHMAILAYRDG--KVVTRAAGCIADPTGR 110
Query: 150 SRHQLGRMLAVDSSGCLIAVSAYEDRXXXXXXXXXXXXDIIDKKICYPSESE---VDT 204
+ L L + +G LIA+ A+E + + YP+ S+ VDT
Sbjct: 111 ATDNLFS-LTIHRNG-LIAIRAFEGSVKMIQWESGTDLRHFNVRFDYPNVSDFKFVDT 166
Score = 42 (19.8 bits), Expect = 3.1e-07, Sum P(5) = 3.1e-07
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 398 VDTGEFFMIEIAF-GSDGHKVHL 419
VDTGE + +AF D H HL
Sbjct: 164 VDTGEDDVYRVAFIYDDDHGKHL 186
Score = 40 (19.1 bits), Expect = 3.1e-07, Sum P(5) = 3.1e-07
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 833 IGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSIS 874
+G P L + + + SDRP ++ +A L +++++
Sbjct: 633 VGTRPPSLHRVRNKNRQHLFVCSDRPVIIFSASKKLVFSNVN 674
Score = 39 (18.8 bits), Expect = 3.1e-07, Sum P(5) = 3.1e-07
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 873 ISFQPSTHATPVCS--VECPKGILFVAENSL 901
I++Q ST VCS E +F ++N+L
Sbjct: 726 IAYQKSTSTYGVCSNRTESKAERVFASKNAL 756
>ASPGD|ASPL0000052925 [details] [associations]
symbol:ddbA species:162425 "Emericella nidulans"
[GO:0006282 "regulation of DNA repair" evidence=IEA;ISA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEP;IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0070913 "Ddb1-Wdr21
complex" evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
[GO:0070912 "Ddb1-Ckn1 complex" evidence=IEA] [GO:0031465
"Cul4B-RING ubiquitin ligase complex" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0040020 "regulation of meiosis" evidence=IEA] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0007090 "regulation of S phase
of mitotic cell cycle" evidence=IEA] [GO:0034644 "cellular response
to UV" evidence=IEA] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10 EMBL:BN001308
GO:GO:0003676 EMBL:AACD01000007 KO:K10610 OMA:DRPAVIY
OrthoDB:EOG473T0C RefSeq:XP_658200.1 STRING:Q5BFT4
EnsemblFungi:CADANIAT00002078 GeneID:2876375 KEGG:ani:AN0596.2
eggNOG:NOG316722 HOGENOM:HOG000216556 Uniprot:Q5BFT4
Length = 1132
Score = 138 (53.6 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 55/218 (25%), Positives = 105/218 (48%)
Query: 350 AACALLELRDYDPMCIDSDSGN-AKEPSKHVCSW-SWEPETDKIPKMVFCVDTGE-FFMI 406
AA LL L + +D+D+ +P + + +WE + D + + D G FF++
Sbjct: 253 AAGGLLILGETSIKYVDADNNEIVSQPLEEATIFVAWE-QVDS-QRWLLADDYGRLFFLM 310
Query: 407 EIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLK--EENGRLVYTSP 464
+ S+ + L L L+++ G + GD V++ +++ +++ T
Sbjct: 311 LVLRNSEVERWELHS-LGNTSRASVLVYLGGGVVFVGSHQGDSQVIRIGDQSFQVIQT-- 367
Query: 465 IQNIAPILDMSVVDYHDE-KRDQM--FAC--------CGVAPEGSLRIIRSGISLEKLLR 513
+ NIAP+LD +++D + +QM F+ G +G+LR +RSG+ LE+L
Sbjct: 368 LSNIAPVLDFTIMDLGNRTSENQMHEFSSGQARIVTGSGAFDDGTLRSVRSGVGLEELGV 427
Query: 514 TAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLR 551
+ + IT W +++ + L+++FV ETRV R
Sbjct: 428 LGDM-EHITDLWGLQVGSRGDFLDTLLVTFVNETRVFR 464
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 903 863 0.00084 122 3 11 22 0.50 33
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 627 (67 KB)
Total size of DFA: 437 KB (2208 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 70.70u 0.13s 70.83t Elapsed: 00:00:03
Total cpu time: 70.71u 0.13s 70.84t Elapsed: 00:00:03
Start: Sat May 11 06:46:15 2013 End: Sat May 11 06:46:18 2013