BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044070
(903 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3
SV=1
Length = 1095
Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 107/439 (24%), Positives = 179/439 (40%), Gaps = 92/439 (20%)
Query: 467 NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWT 526
N+ PI+D VVD + + Q+ C G +GSLRI+R+GI + + + + QGI G W+
Sbjct: 352 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE--QASVELQGIKGMWS 409
Query: 527 VRMKVSDPYHSFLVLSFVEETRVLRVGL-NFTDVTDSVGFRPDVCTLACGLVADGLLVQI 585
+R DPY +FLV+SF+ ETRVL + L + + T+ GF V TL C LVQ+
Sbjct: 410 LRSATDDPYDTFLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQV 469
Query: 586 HQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEHVSISLGAVAHNMIIVSTSNPCFLFIL 644
N+VRL T S + WF P S+++ ++++T ++
Sbjct: 470 TSNSVRLVSST----------SRDLKNEWFAPVGYSVNVATANATQVLLATGGGHLVY-- 517
Query: 645 GVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVII 704
L + + E+++ +L ++SC+ I +PI N S A +
Sbjct: 518 ----LEIGDGVLNEVKYAKLDYDISCLDI-----------NPIGENPNYSNIA-----AV 557
Query: 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYV 764
G I S+ L+ + KE L G I+ + + + G Y+
Sbjct: 558 GMWTDISVRIYSLPDLNLITKEQL----GGEIIPRSVLMCSFEGI------------SYL 601
Query: 765 LAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPIN 824
L L +G LL F + + S+ E D ++
Sbjct: 602 LCALGDGHLLNF--------------------------------VLSMSTGELTDRKKVS 629
Query: 825 LQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPV 884
L G P+ L S + A SDRP ++ ++ L Y++++ + +H P
Sbjct: 630 L--------GTQPITLRTFSSKDTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPF 681
Query: 885 CSVECPKGILFVAENSLNL 903
P + E L +
Sbjct: 682 NVAAFPDSLAIAKEGELTI 700
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1
SV=1
Length = 1090
Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 107/439 (24%), Positives = 179/439 (40%), Gaps = 92/439 (20%)
Query: 467 NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWT 526
N+ PI+D VVD + + Q+ C G +GSLRI+R+GI + + + + QGI G W+
Sbjct: 347 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE--QASVELQGIKGMWS 404
Query: 527 VRMKVSDPYHSFLVLSFVEETRVLRVGL-NFTDVTDSVGFRPDVCTLACGLVADGLLVQI 585
+R DPY +FLV+SF+ ETRVL + L + + T+ GF V TL C LVQ+
Sbjct: 405 LRSATDDPYDTFLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQV 464
Query: 586 HQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEHVSISLGAVAHNMIIVSTSNPCFLFIL 644
N+VRL T S + WF P S+++ ++++T ++
Sbjct: 465 TSNSVRLVSST----------SRDLKNEWFAPVGYSVNVATANATQVLLATGGGHLVY-- 512
Query: 645 GVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVII 704
L + + E+++ +L ++SC+ I +PI N S A +
Sbjct: 513 ----LEIGDGVLNEVKYAKLDYDISCLDI-----------NPIGENPNYSNIA-----AV 552
Query: 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYV 764
G I S+ L+ + KE L G I+ + + + G Y+
Sbjct: 553 GMWTDISVRIYSLPDLNLITKEQL----GGEIIPRSVLMCSFEGI------------SYL 596
Query: 765 LAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPIN 824
L L +G LL F + + S+ E D ++
Sbjct: 597 LCALGDGHLLNF--------------------------------VLSMSTGELTDRKKVS 624
Query: 825 LQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPV 884
L G P+ L S + A SDRP ++ ++ L Y++++ + +H P
Sbjct: 625 L--------GTQPITLRTFSSKDTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPF 676
Query: 885 CSVECPKGILFVAENSLNL 903
P + E L +
Sbjct: 677 NVAAFPDSLAIAKEGELTI 695
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1
SV=1
Length = 1088
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 103/439 (23%), Positives = 183/439 (41%), Gaps = 92/439 (20%)
Query: 467 NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWT 526
N+ PI+D VVD + + Q+ C G +GSLR++R+GI + + + + QGI G W+
Sbjct: 347 NLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLRVVRNGIGINE--QASVELQGIKGMWS 404
Query: 527 VRMKVSDPYHSFLVLSFVEETRVLRVGL-NFTDVTDSVGFRPDVCTLACGLVADGLLVQI 585
++ + + + +FLV+SF+ ETR+L + L + + T+ GF V TL C LVQ+
Sbjct: 405 LKSSIDEAFDTFLVVSFISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQV 464
Query: 586 HQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEHVSISLGAVAHNMIIVSTSNPCFLFIL 644
N+VRL T + + W P ++++ + ++++T ++
Sbjct: 465 TSNSVRLVSST----------TRELRDEWHAPAGFTVNVATANASQVLLATGGGHLVY-- 512
Query: 645 GVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVII 704
L + ++ E+QH L+ E+SC+ I +PI N + L A +
Sbjct: 513 ----LEIGDGKLTEVQHALLEYEVSCLDI-----------NPIG--DNPNYSQLAA---V 552
Query: 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYV 764
G I S+ L+ + KE L G I+ + + A G Y+
Sbjct: 553 GMWTDISVRIFSLPELTLITKEQL----GGEIIPRSVLLCAFEGI------------SYL 596
Query: 765 LAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPIN 824
L L +G LL F+ T++ + KD ++
Sbjct: 597 LCALGDGHLLNFQMD--------------------------------TTTGQLKDRKKVS 624
Query: 825 LQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPV 884
L G P+ L S + A SDRP ++ ++ L Y++++ + +H P
Sbjct: 625 L--------GTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPF 676
Query: 885 CSVECPKGILFVAENSLNL 903
S P + E L +
Sbjct: 677 NSAAFPDSLAIAREGELTI 695
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2
SV=2
Length = 1088
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/439 (23%), Positives = 181/439 (41%), Gaps = 92/439 (20%)
Query: 467 NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWT 526
N+ PI+D VVD + + Q+ C G +GSLRI+R+GI + + + + QGI G W+
Sbjct: 347 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE--QASVELQGIKGMWS 404
Query: 527 VRMKVSDPYHSFLVLSFVEETRVLRVGL-NFTDVTDSVGFRPDVCTLACGLVADGLLVQI 585
++ + + + +FLV+SF+ ETR+L + + + + T+ GF +V TL C LVQ+
Sbjct: 405 LKSSIDEAFDTFLVVSFISETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQV 464
Query: 586 HQNAVRLCMPTMVAHSGGIPLSYPVCTSW-FPEHVSISLGAVAHNMIIVSTSNPCFLFIL 644
N+VRL T + + W P S+++ + ++++T ++
Sbjct: 465 TSNSVRLVSST----------TRELRNKWDAPAGFSVNVATANASQVLLATGGGHLVY-- 512
Query: 645 GVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVII 704
L + + E++H+ L+ E+SC+ I +PI N + L A +
Sbjct: 513 ----LEIGDGTLTEVKHVLLEYEVSCLDI-----------NPIG--DNPNYSQLAA---V 552
Query: 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYV 764
G I + L+ + KE L G I+ + + A G Y+
Sbjct: 553 GMWTDISVRIFVLPDLTLITKEEL----GGEIIPRSVLLCAFEGI------------SYL 596
Query: 765 LAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPIN 824
L L +G LL F+ TS + +D ++
Sbjct: 597 LCALGDGHLLNFQLD--------------------------------TSCGKLRDRKKVS 624
Query: 825 LQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPV 884
L G P+ L S + A SDRP ++ + L Y++++ + +H P
Sbjct: 625 L--------GTRPITLRTFSSKSATHVFAASDRPAVIYSNNKKLLYSNVNLKEVSHMCPF 676
Query: 885 CSVECPKGILFVAENSLNL 903
S P + E L +
Sbjct: 677 NSAAFPDSLAIAREGELTI 695
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4
Length = 1217
Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 98/453 (21%), Positives = 184/453 (40%), Gaps = 91/453 (20%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518
LV + +++PIL + D +E Q++ CG P SLR++R G+ + ++ + +
Sbjct: 395 LVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMA-VSELP 453
Query: 519 QGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVA 578
WTVR + D + +++++SFV T VL +G +VTDS GF TL+C L+
Sbjct: 454 GNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSCSLLG 512
Query: 579 DGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNP 638
D LVQ++ + +R I V P +I AV ++++ +
Sbjct: 513 DDALVQVYPDGIR-----------HIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGG 561
Query: 639 CFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP-ERRKSSSPISLVSNSSVPA 697
++ S ++ Y + + +++ C+S+ P E+R + LV N
Sbjct: 562 ELVYFEMDPSGQLNEY----TERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDN----- 612
Query: 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASG-------SIVLTNTMGTAISGCI 750
+V ++S P + L+ L+ S+ + GT +
Sbjct: 613 ------------------TVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDEL 654
Query: 751 PQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIA 810
+ + Y+ GL+NG+LLR + P++ +T
Sbjct: 655 GERGSIGF---LYLNIGLQNGVLLR--------------TVLDPVTGDLSDTR------- 690
Query: 811 ATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAY 870
TR +G PV L + ++A+S R WL + +
Sbjct: 691 -------------------TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHL 731
Query: 871 TSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
T +S++ A+ S +CP+GI+ ++ N+L +
Sbjct: 732 TPLSYETLEFASGFASEQCPEGIVAISTNTLRI 764
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 48 HGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQN 106
HG+ ++V + +EL+ + G V ++ VFG I+ L
Sbjct: 19 HGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAF---------- 68
Query: 107 SQVMG--KDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSG 164
++ G KD +VV SDSG++ L + + F + Q G R G+ LAVD G
Sbjct: 69 -RLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKG 127
Query: 165 CLIAVSAYEDRLGLFSLSMSSGSDI 189
+ +SA E + ++ L+ + + +
Sbjct: 128 RAVMISAIEKQKLVYILNRDAAARL 152
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 98/453 (21%), Positives = 184/453 (40%), Gaps = 91/453 (20%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518
LV + +++PIL + D +E Q++ CG P SLR++R G+ + ++ + +
Sbjct: 395 LVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMA-VSELP 453
Query: 519 QGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVA 578
WTVR + D + +++++SFV T VL +G +VTDS GF TL+C L+
Sbjct: 454 GNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSCSLLG 512
Query: 579 DGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNP 638
D LVQ++ + +R I V P +I AV ++++ +
Sbjct: 513 DDALVQVYPDGIR-----------HIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGG 561
Query: 639 CFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP-ERRKSSSPISLVSNSSVPA 697
++ S ++ Y + + +++ C+S+ P E+R + LV N
Sbjct: 562 ELVYFEMDPSGQLNEY----TERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDN----- 612
Query: 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASG-------SIVLTNTMGTAISGCI 750
+V ++S P + L+ L+ S+ + GT +
Sbjct: 613 ------------------TVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDEL 654
Query: 751 PQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIA 810
+ + Y+ GL+NG+LLR + P++ +T
Sbjct: 655 GERGSIGF---LYLNIGLQNGVLLR--------------TVLDPVTGDLSDTR------- 690
Query: 811 ATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAY 870
TR +G PV L + ++A+S R WL + +
Sbjct: 691 -------------------TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHL 731
Query: 871 TSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
T +S++ A+ S +CP+GI+ ++ N+L +
Sbjct: 732 TPLSYETLEFASGFASEQCPEGIVAISTNTLRI 764
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 48 HGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQN 106
HG+ ++V + +EL+ + G V ++ VFG I+ L
Sbjct: 19 HGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAF---------- 68
Query: 107 SQVMG--KDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSG 164
++ G KD +VV SDSG++ L + + F + Q G R G+ LAVD G
Sbjct: 69 -RLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKG 127
Query: 165 CLIAVSAYEDRLGLFSLSMSSGSDI 189
+ +SA E + ++ L+ + + +
Sbjct: 128 RAVMISAIEKQKLVYILNRDAAARL 152
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
Length = 1217
Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 98/453 (21%), Positives = 184/453 (40%), Gaps = 91/453 (20%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518
LV + +++PIL + D +E Q++ CG P SLR++R G+ + ++ + +
Sbjct: 395 LVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMA-VSELP 453
Query: 519 QGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVA 578
WTVR + D + +++++SFV T VL +G +VTDS GF TL+C L+
Sbjct: 454 GNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSCSLLG 512
Query: 579 DGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNP 638
D LVQ++ + +R I V P +I AV ++++ +
Sbjct: 513 DDALVQVYPDGIR-----------HIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGG 561
Query: 639 CFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP-ERRKSSSPISLVSNSSVPA 697
++ S ++ Y + + +++ C+S+ P E+R + LV N
Sbjct: 562 ELVYFEMDPSGQLNEY----TERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDN----- 612
Query: 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASG-------SIVLTNTMGTAISGCI 750
+V ++S P + L+ L+ S+ + GT +
Sbjct: 613 ------------------TVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDEL 654
Query: 751 PQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIA 810
+ + Y+ GL+NG+LLR + P++ +T
Sbjct: 655 GERGSIGF---LYLNIGLQNGVLLR--------------TVLDPVTGDLSDTR------- 690
Query: 811 ATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAY 870
TR +G PV L + ++A+S R WL + +
Sbjct: 691 -------------------TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHL 731
Query: 871 TSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
T +S++ A+ S +CP+GI+ ++ N+L +
Sbjct: 732 TPLSYETLEFASGFASEQCPEGIVAISTNTLRI 764
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 48 HGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQN 106
HG+ ++V + +EL+ + G V ++ VFG I+ L
Sbjct: 19 HGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAF---------- 68
Query: 107 SQVMG--KDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSG 164
++ G KD +VV SDSG++ L + + F + Q G R G+ LAVD G
Sbjct: 69 -RLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKG 127
Query: 165 CLIAVSAYEDRLGLFSLSMSSGSDI 189
+ +SA E + ++ L+ + + +
Sbjct: 128 RAVMISAIEKQKLVYILNRDAAARL 152
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1
Length = 1217
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/449 (22%), Positives = 189/449 (42%), Gaps = 83/449 (18%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518
LV ++++PI+ + D +E Q++ CG P +LR++R G+ + ++ + +
Sbjct: 395 LVLVDEQESLSPIMSCQIADLANEDTPQLYVACGRGPRSTLRVLRHGLEVSEMA-VSELP 453
Query: 519 QGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVA 578
WTVR V D + +++++SFV T VL +G +VTDS GF TL+C L+
Sbjct: 454 GNPNAVWTVRRHVEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSCSLLG 512
Query: 579 DGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNP 638
+ LVQ++ + +R I V P +I AV ++++ +
Sbjct: 513 EDALVQVYPDGIR-----------HIRADKRVNEWKTPGKKTIIRCAVNQRQVVIALTGG 561
Query: 639 CFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP-ERRKSSSPISLVSNSS--V 695
++ S ++ Y + + +++ C+S+ P E+R + LV N+ +
Sbjct: 562 ELVYFEMDPSGQLNEY----TERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRII 617
Query: 696 PALPAGVIIGYTFVIGTHRP-SVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDV 754
P+ + +P S++ L P E L ++ G + + +G G I
Sbjct: 618 SLDPSDCL----------QPLSMQALPAQP-ESLCIVEMGGVEKQDELGE--KGTI---- 660
Query: 755 RLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSS 814
Y+ GL+NG+LLR + P++ +T
Sbjct: 661 -----GFLYLNIGLQNGVLLR--------------TVLDPVTGDLSDTR----------- 690
Query: 815 FESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSIS 874
TR +G PV L + ++A+S R WL + + T +S
Sbjct: 691 ---------------TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLS 735
Query: 875 FQPSTHATPVCSVECPKGILFVAENSLNL 903
++ +A+ S +CP+GI+ ++ N+L +
Sbjct: 736 YETLEYASGFASEQCPEGIVAISTNTLRI 764
Score = 40.4 bits (93), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
Query: 48 HGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQN 106
HG+ ++V + +EL+ + G V ++ VFG ++ L
Sbjct: 19 HGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFGVVRSLMAFRLTGG----- 73
Query: 107 SQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCL 166
KD +VV SDSG++ L + + F + Q G R G+ LAVD G
Sbjct: 74 ----TKDYVVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGRA 129
Query: 167 IAVSAYEDRLGLFSLSMSSGSDI 189
+ + A E + ++ L+ + + +
Sbjct: 130 VMIGATEKQKLVYILNRDAAARL 152
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/453 (21%), Positives = 183/453 (40%), Gaps = 91/453 (20%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518
LV + +++PIL + D +E Q++ CG P SLR++R G+ + + + +
Sbjct: 395 LVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSETA-VSELP 453
Query: 519 QGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVA 578
WTVR + D + +++++SFV T VL +G +VTDS GF TL+C L+
Sbjct: 454 GNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSCSLLG 512
Query: 579 DGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNP 638
D LVQ++ + +R I V P +I AV ++++ +
Sbjct: 513 DDALVQVYPDGIR-----------HIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGG 561
Query: 639 CFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP-ERRKSSSPISLVSNSSVPA 697
++ S ++ Y + + +++ C+S+ P E+R + LV N
Sbjct: 562 ELVYFEMDPSGQLNEY----TERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDN----- 612
Query: 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASG-------SIVLTNTMGTAISGCI 750
+V ++S P + L+ L+ S+ + GT +
Sbjct: 613 ------------------TVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDEL 654
Query: 751 PQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIA 810
+ + Y+ GL+NG+LLR + P++ +T
Sbjct: 655 GERGSIGF---LYLNIGLQNGVLLR--------------TVLDPVTGDLSDTR------- 690
Query: 811 ATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAY 870
TR +G PV L + ++A+S R WL + +
Sbjct: 691 -------------------TRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHL 731
Query: 871 TSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
T +S++ A+ S +CP+GI+ ++ N+L +
Sbjct: 732 TPLSYETLEFASGFASEQCPEGIVAISTNTLRI 764
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 48 HGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQN 106
HG+ ++V + +EL+ + G V ++ VFG I+ L
Sbjct: 19 HGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAFRLTGG----- 73
Query: 107 SQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCL 166
KD +VV SDSG++ L + + F + Q G R G+ LAVD G
Sbjct: 74 ----TKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGRA 129
Query: 167 IAVSAYEDRLGLFSLSMSSGSDI 189
+ +SA E + ++ L+ + + +
Sbjct: 130 VMISAIEKQKLVYILNRDAAARL 152
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 184/466 (39%), Gaps = 100/466 (21%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL A + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA----------LVSEWKEPQG 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP 678
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI----- 543
Query: 679 ERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVL 738
+P+ SN P G+ + I PS E+L + + G I
Sbjct: 544 ------TPLG-DSNGMSPLCAIGLWTDISARIA-KLPSFELLH-------KEMLGGEI-- 586
Query: 739 TNTMGTAISGCIPQDVRL-VLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISA 797
IP+ + + Y+L L +G L F
Sbjct: 587 -----------IPRSILMTTFESSHYLLCALGDGALFYFGL------------------- 616
Query: 798 TFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDR 857
NI +G+ + D + L G P L ++ A SDR
Sbjct: 617 ------NIETGLLS-------DRKKVTL--------GTQPTVLRTFRSLSTTNVFACSDR 655
Query: 858 PWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
P ++ ++ H L +++++ + + P+ S P + ++L +
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 26/235 (11%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ GF D T CG VA L+QI +VRL A + + W P
Sbjct: 446 TELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA----------LVSEWKEPNG 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
+IS+ + N ++V+ L+ L +R + EM+H E++C+ I
Sbjct: 496 KNISVASCNSNQVVVAVGRA--LYYLEIRPQELRQINCTEMEH-----EVACLDI 543
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1
Length = 1140
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 184/466 (39%), Gaps = 100/466 (21%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL A + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA----------LVSEWKEPQA 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP 678
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI----- 543
Query: 679 ERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVL 738
+P+ SN P G+ + I PS E+L + + G I
Sbjct: 544 ------TPLG-DSNGLSPLCAIGLWTDISARI-LKLPSFELLH-------KEMLGGEI-- 586
Query: 739 TNTMGTAISGCIPQDVRL-VLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISA 797
IP+ + + Y+L L +G L F
Sbjct: 587 -----------IPRSILMTTFESSHYLLCALGDGALFYFGL------------------- 616
Query: 798 TFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDR 857
NI +G+ + D + L G P L ++ A SDR
Sbjct: 617 ------NIETGLLS-------DRKKVTL--------GTQPTVLRTFRSLSTTNVFACSDR 655
Query: 858 PWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
P ++ ++ H L +++++ + + P+ S P + ++L +
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1
Length = 1140
Score = 96.3 bits (238), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 184/466 (39%), Gaps = 100/466 (21%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL A + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA----------LVSEWKEPQA 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP 678
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI----- 543
Query: 679 ERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVL 738
+P+ SN P G+ + I PS E+L + + G I
Sbjct: 544 ------TPLG-DSNGLSPLCAIGLWTDISARI-LKLPSFELLH-------KEMLGGEI-- 586
Query: 739 TNTMGTAISGCIPQDVRL-VLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISA 797
IP+ + + Y+L L +G L F
Sbjct: 587 -----------IPRSILMTTFESSHYLLCALGDGALFYFGL------------------- 616
Query: 798 TFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDR 857
NI +G+ + D + L G P L ++ A SDR
Sbjct: 617 ------NIETGLLS-------DRKKVTL--------GTQPTVLRTFRSLSTTNVFACSDR 655
Query: 858 PWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
P ++ ++ H L +++++ + + P+ S P + ++L +
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1
SV=1
Length = 1140
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 184/466 (39%), Gaps = 100/466 (21%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R + LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL A + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA----------LVSEWKEPQA 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP 678
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI----- 543
Query: 679 ERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVL 738
+P+ SN P G+ + I PS E+L + + G I
Sbjct: 544 ------TPLG-DSNGLSPLCAIGLWTDISARI-LKLPSFELLH-------KEMLGGEI-- 586
Query: 739 TNTMGTAISGCIPQDVRL-VLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISA 797
IP+ + + Y+L L +G L F
Sbjct: 587 -----------IPRSILMTTFESSHYLLCALGDGALFYFGL------------------- 616
Query: 798 TFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDR 857
NI +G+ + D + L G P L ++ A SDR
Sbjct: 617 ------NIETGLLS-------DRKKVTL--------GTQPTVLRTFRSLSTTNVFACSDR 655
Query: 858 PWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
P ++ ++ H L +++++ + + P+ S P + ++L +
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2
Length = 1140
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 183/466 (39%), Gaps = 100/466 (21%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPGRETDDTLVLSFVGQTRVLMLNGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
T+ +GF D T CG VA L+QI +VRL A + + W P+
Sbjct: 446 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA----------LVSEWKEPQG 495
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP 678
+IS+ + + ++V+ + L + E+ ++ H ++ E++C+ I
Sbjct: 496 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI----- 543
Query: 679 ERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVL 738
+P+ SN P G+ + I PS E+L + + G I
Sbjct: 544 ------TPLG-DSNGLSPLCAIGLWTDISARI-LKLPSFELLH-------KEMLGGEI-- 586
Query: 739 TNTMGTAISGCIPQDVRL-VLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISA 797
IP+ + + Y+L L +G L F
Sbjct: 587 -----------IPRSILMTTFESSHYLLCALGDGALFYFGL------------------- 616
Query: 798 TFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDR 857
NI +G+ + D + L G P L ++ A SDR
Sbjct: 617 ------NIETGLLS-------DRKKVTL--------GTQPTVLRTFRSLSTTNVFACSDR 655
Query: 858 PWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
P ++ ++ H L +++++ + + P+ S P + ++L +
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
>sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=2 SV=1
Length = 1140
Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 103/452 (22%), Positives = 177/452 (39%), Gaps = 94/452 (20%)
Query: 454 EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLR 513
E+ +V N+ PI+DM VVD + + Q+ C G EGSLRIIR+GI + +
Sbjct: 342 EQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHE--H 399
Query: 514 TAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLA 573
+ GI G W +R + LVLSFV +TRVL + + T+ +GF D T
Sbjct: 400 ASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFF 459
Query: 574 CGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEHVSISLGAVAHNMII 632
CG VA L+QI +VRL A + + W P +IS+ + + ++
Sbjct: 460 CGNVAHQQLIQITSASVRLVSQEPKA----------LVSEWKEPRAKNISVASCNSSQVV 509
Query: 633 VSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSN 692
V+ + L + E+ ++ H ++ E++C+ + +P+ SN
Sbjct: 510 VAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDV-----------TPLG-DSN 550
Query: 693 SSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQ 752
P G+ + I PS E+L + + G I IP+
Sbjct: 551 GLSPLCAIGLWTDISARI-LKLPSFELLH-------KEMLGGEI-------------IPR 589
Query: 753 DVRL-VLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAA 811
+ + Y+L L +G L F NI +G+ +
Sbjct: 590 SILMTTFESSHYLLCALGDGALFYFGL-------------------------NIETGLLS 624
Query: 812 TSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYT 871
D + L G P L ++ A SDRP ++ ++ H L ++
Sbjct: 625 -------DRKKVTL--------GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFS 669
Query: 872 SISFQPSTHATPVCSVECPKGILFVAENSLNL 903
+++ + + P+ S P + ++L +
Sbjct: 670 NVNLKEVNYMCPLNSDGYPDSLALANTSTLTI 701
>sp|Q6P6Z0|DDB1_XENLA DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1
Length = 1140
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
+GD ++K E+ +V N+ PI+DM VVD + + Q+ C G EGSL
Sbjct: 328 LGDSQLVKLTTESNEQGSYVVVMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 387
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
RIIR+GI + + + GI G W +R+ LVLSFV +TRVL + +
Sbjct: 388 RIIRNGIGIHE--HASIDLPGIKGLWPLRVAADRDTDDTLVLSFVGQTRVLTLTGEEVEE 445
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRL 592
TD GF D T CG VA L+QI +VRL
Sbjct: 446 TDLAGFVDDQQTFFCGNVAHQQLIQITSASVRL 478
>sp|Q9XYZ5|DDB1_DROME DNA damage-binding protein 1 OS=Drosophila melanogaster GN=pic PE=1
SV=1
Length = 1140
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 123/263 (46%), Gaps = 26/263 (9%)
Query: 427 PPCKALLWVEGRFLSAFVEMGDGMV--LKEENGRLVYTSPIQN---IAPILDMSVVDYHD 481
P C + +++ FL GD + L E Y P++N +APILD++VVD
Sbjct: 310 PEC--ITYLDNGFLYIGARHGDSQLVRLNSEAIDGSYVVPVENFTNLAPILDIAVVDLDR 367
Query: 482 EKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSD-PYHSFLV 540
+ + Q+ C G +GSLRIIR GI +++ GI G W++++ V + PY + LV
Sbjct: 368 QGQGQIITCSGSFKDGSLRIIRIGIGIQE--HACIDLPGIKGMWSLKVGVDESPYENTLV 425
Query: 541 LSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAH 600
L+FV TR+L + + T+ GF D+ T C V L+Q+ ++VRL A
Sbjct: 426 LAFVGHTRILTLSGEEVEETEIPGFASDLQTFLCSNVDYDQLIQVTSDSVRLVSSATKA- 484
Query: 601 SGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQ 660
+ W P ++G V+ N + ++ C +F + + S + E
Sbjct: 485 ---------LVAEWRPTG-DRTIGVVSCNTTQILVASACDIFYIVIEDGS-----LREQS 529
Query: 661 HMRLQSELSCISIPQKHPERRKS 683
L E++C+ I ++KS
Sbjct: 530 RRTLAYEVACLDITPLDETQKKS 552
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/449 (21%), Positives = 178/449 (39%), Gaps = 84/449 (18%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518
LV + ++ PILD ++ Q+FA CG S +++R G+ +++ + +
Sbjct: 412 LVQVDEMPSLDPILDAKPLNPLAADSPQIFAACGRGARSSFKMLRHGLEVQEAVSSD--L 469
Query: 519 QGI-TGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLV 577
G+ + WT ++ D Y S+++LSFV T VL +G +V+DS GF TLA +
Sbjct: 470 PGVPSAVWTTKITQQDEYDSYIILSFVNGTLVLSIGETIEEVSDS-GFLTSSSTLAVQQL 528
Query: 578 ADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSN 637
L+Q+H + +R + + E + SL I+ + +N
Sbjct: 529 GQDALLQVHPHGIR----------------HVLVDKQINEWATPSLPNGRQTTIVATCTN 572
Query: 638 PCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPA 697
+ + +LS + +E+ + +L+ ++ ER+ + + + S+P
Sbjct: 573 ERQVVV----ALSSNELVYFELD---MDGQLN------EYQERKAMGAGVLTM---SMPD 616
Query: 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLV 757
P G +G +V ++S P L SI + A S C+ + +
Sbjct: 617 CPEGRQRTPYLAVGCDDSTVRIISLEPNSTL-----ASISIQALTAPASSICMAEMLDAT 671
Query: 758 LADQF---YVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSS 814
+ +V GL+NG+LLR I ++ +T
Sbjct: 672 IDRNHATTFVNIGLQNGVLLR--------------TILDAVTGQLTDTR----------- 706
Query: 815 FESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSIS 874
TR +G V L+ A ++ALS R WL T + L + +
Sbjct: 707 ---------------TRFLGSKAVRLIRTKVHGQAAVMALSTRTWLSYTYQDRLQFVPLI 751
Query: 875 FQPSTHATPVCSVECPKGILFVAENSLNL 903
F HA + CP+G++ + ++L +
Sbjct: 752 FDVLDHAWSFSAELCPEGLIGIVGSTLRI 780
Score = 40.8 bits (94), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 13/161 (8%)
Query: 32 YLAKCVLK--GSVVLQVAHGHLRSPTSNDVVFGKETSIELVI-IGEDGIVQSVCEQAVFG 88
YL L+ GSV V G +++ K + +EL+ + G V +V FG
Sbjct: 5 YLYNLTLQASGSVNATVV-GQFSGTRQQEIIVAKGSRLELLRPDTQTGKVDTVLSHDAFG 63
Query: 89 TIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPG 148
I+ LA KD ++V SDSG++ L + + + V Q G
Sbjct: 64 VIRSLAAFRLTGG---------SKDYVIVGSDSGRIVILEYQPKTNSLEKVHQETFGRSG 114
Query: 149 NSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDI 189
+ R G+ LA D G + A E + ++ L+ + +++
Sbjct: 115 SRRIVPGQYLATDPKGRATMIGAMEKAMLVYILNRDAQANL 155
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/455 (20%), Positives = 169/455 (37%), Gaps = 99/455 (21%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRD--QMFACCGVAPEGSLRIIRSGISLEKLLRTAP 516
L+ + ++ PI D VV+ D Q++A CG + R ++ G+ + +++ ++P
Sbjct: 412 LLLVDTVPSLDPITDAHVVNLLGASSDTPQIYAACGRGARSTFRTLKHGLDVAEMV-SSP 470
Query: 517 IYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGL 576
+ T WT+++ D Y S++VLSF T VL +G +V D+ GF TLA
Sbjct: 471 LPGVPTNVWTLKLTEDDEYDSYIVLSFPNGTLVLSIGETIEEVNDT-GFLSSGPTLAVQQ 529
Query: 577 VADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSW-FPEHVSISLGAVAHNMIIVST 635
+ + L+Q+H +R + W P +I ++++
Sbjct: 530 LGNAGLLQVHPYGLRHIR------------AADRVDEWPAPPGQTIVAATTNRRQVVIAL 577
Query: 636 SNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695
S ++ S+S Y+ + L +C++I + RR++S
Sbjct: 578 STAELVYFELDPEGSLSEYQ----EKKALPGNATCVTIAEVPEGRRRTS----------- 622
Query: 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLA-------SGSIVLTNTMGTAISG 748
+G +V ++S P L L+ SI L T+I
Sbjct: 623 -----------FLAVGCDNQTVSIISLEPDSTLDTLSLQALTAPPTSICLAEIFDTSIDK 671
Query: 749 CIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSG 808
++ GL NG+LLR + V P+ +S T
Sbjct: 672 N---------RATMFLNIGLMNGVLLR----------TVVDPVDGSLSDT---------- 702
Query: 809 IAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSL 868
R +G P LV + ++A S R WLL T + L
Sbjct: 703 --------------------RLRFLGAKPPKLVRANVQGQPSVMAFSSRTWLLYTYQDML 742
Query: 869 AYTSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
+ + +A + + CP G++ ++ N+L +
Sbjct: 743 QTQPLIYDTLEYAWSLSAAMCPDGLIGISGNTLRI 777
Score = 37.7 bits (86), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 76 GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFC-NEMH 134
G + ++ FGTI+++A F M KD ++ SDSG+LS L F +
Sbjct: 49 GQLDTIVSTEAFGTIRNIA------GFRLAG---MTKDYILATSDSGRLSILEFVISPTP 99
Query: 135 RFFPVAQVHLSNPGNSRHQLGRMLAVDSSG--CLIA 168
F + Q G+ R G+ LAVD G CL+
Sbjct: 100 HFESLYQEVFGKSGSRRIVPGQFLAVDPKGRSCLVG 135
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/455 (20%), Positives = 169/455 (37%), Gaps = 99/455 (21%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRD--QMFACCGVAPEGSLRIIRSGISLEKLLRTAP 516
L+ + ++ PI D VV+ D Q++A CG + R ++ G+ + +++ ++P
Sbjct: 412 LLLVDTVPSLDPITDAHVVNLLGASSDTPQIYAACGRGARSTFRTLKHGLDVAEMV-SSP 470
Query: 517 IYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGL 576
+ T WT+++ D Y S++VLSF T VL +G +V D+ GF TLA
Sbjct: 471 LPGVPTNVWTLKLTEDDEYDSYIVLSFPNGTLVLSIGETIEEVNDT-GFLSSGPTLAVQQ 529
Query: 577 VADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSW-FPEHVSISLGAVAHNMIIVST 635
+ + L+Q+H +R + W P +I ++++
Sbjct: 530 LGNAGLLQVHPYGLRHIR------------AADRVDEWPAPPGQTIVAATTNRRQVVIAL 577
Query: 636 SNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695
S ++ S+S Y+ + L +C++I + RR++S
Sbjct: 578 STAELVYFELDPEGSLSEYQ----EKKALPGNATCVTIAEVPEGRRRTS----------- 622
Query: 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLA-------SGSIVLTNTMGTAISG 748
+G +V ++S P L L+ SI L T+I
Sbjct: 623 -----------FLAVGCDNQTVSIISLEPDSTLDTLSLQALTAPPTSICLAEIFDTSIDK 671
Query: 749 CIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSG 808
++ GL NG+LLR + V P+ +S T
Sbjct: 672 N---------RATMFLNIGLMNGVLLR----------TVVDPVDGSLSDT---------- 702
Query: 809 IAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSL 868
R +G P LV + ++A S R WLL T + L
Sbjct: 703 --------------------RLRFLGAKPPKLVRANVQGQPSVMAFSSRTWLLYTYQDML 742
Query: 869 AYTSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
+ + +A + + CP G++ ++ N+L +
Sbjct: 743 QTQPLIYDTLEYAWSLSAAMCPDGLIGISGNTLRI 777
Score = 37.7 bits (86), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 76 GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFC-NEMH 134
G + ++ FGTI+++A F M KD ++ SDSG+LS L F +
Sbjct: 49 GQLDTIVSTEAFGTIRNIA------GFRLAG---MTKDYILATSDSGRLSILEFVISPTP 99
Query: 135 RFFPVAQVHLSNPGNSRHQLGRMLAVDSSG--CLIA 168
F + Q G+ R G+ LAVD G CL+
Sbjct: 100 HFESLYQEVFGKSGSRRIVPGQFLAVDPKGRSCLVG 135
>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp12 PE=1 SV=1
Length = 1206
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/426 (22%), Positives = 168/426 (39%), Gaps = 96/426 (22%)
Query: 485 DQMFACCGVAPEGSLRIIRSGISLEKLLRT----APIYQGITGTWTVRMKVSDPYHSFLV 540
+Q++ CG SLR +R G+ +++ + API WT+++ +D Y S+++
Sbjct: 446 NQLYTVCGRGSNSSLRQLRRGLETTEIVASELPGAPI-----AIWTLKLNQTDVYDSYII 500
Query: 541 LSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAH 600
LSF T VL +G +++DS GF V TL + LVQIH +R
Sbjct: 501 LSFTNGTLVLSIGETVEEISDS-GFLSSVSTLNARQMGRDSLVQIHPKGIRYIRAN---- 555
Query: 601 SGGIPLSYPVCTSW-FPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEM 659
+ W P+ V + A+ I+V+ SN ++ S V ++ E
Sbjct: 556 --------KQTSEWKLPQDVYVVQSAINDMQIVVALSNGELVYF--EMSDDVEGGQLNEY 605
Query: 660 QHMR-LQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVE 718
Q + L + ++ +++ R+S+ +++V L +
Sbjct: 606 QERKTLTANVTSLALGPVQEGSRRSNFMCLACDDATVRVLSLDL---------------- 649
Query: 719 VLSFVPKEGLRVLASGSIVLTNTMGTAISGC-IPQDVRLVLADQFYVLAGLRNGMLLRFE 777
+ E L V A S A S C IP +V V Y+ GL NG+ LR
Sbjct: 650 ---YTTLENLSVQALSS--------PANSLCIIPMNVNGV--STLYLHIGLMNGVYLR-- 694
Query: 778 WPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITP 837
+ I T S L + + R + I P
Sbjct: 695 ---------------TVIDVT------------------SGQLLDTRTRFLGPRAVKIYP 721
Query: 838 VFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVA 897
+ + + ++A+S R +L + + +L + I++ HA+ S +CP+GI+ +
Sbjct: 722 ITMKNQN-----TVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQCPEGIVAIQ 776
Query: 898 ENSLNL 903
+N+L +
Sbjct: 777 KNTLKI 782
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 51 LRSPTSNDVVFGKETSIELVII-GEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQV 109
L + ++V E+ + + + DG + + Q FG I+++A +
Sbjct: 28 LSGKKAQEIVIATESRLLIYKVDATDGRMNCILNQNCFGIIRNVAPLRLTG--------- 78
Query: 110 MGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAV 169
+D LVV SDSG+++ L + E ++ P+ Q G R G LA+D+ G +
Sbjct: 79 FKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRRVVPGEYLAIDAKGRAAMI 138
Query: 170 SAYEDRLGLFSLSMSSGSDI 189
++ E ++ L+ S +++
Sbjct: 139 ASVEKNKLVYVLNRDSEANL 158
>sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3
SV=1
Length = 1225
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 155/411 (37%), Gaps = 95/411 (23%)
Query: 455 ENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRT 514
EN LV T + ++ P++D +V+ +++ Q++ G S R ++ G+ + +++ +
Sbjct: 409 ENLNLVET--LNSLNPLIDSKIVNLNEDDAPQIYTVSGSGARSSFRTLKHGLEVSEIVES 466
Query: 515 APIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLAC 574
+ + WT ++ +D + ++++LSF T VL +G +VTD+ GF TLA
Sbjct: 467 E-LPSVPSAVWTTKLTRADEFDAYIILSFANGTLVLSIGETVEEVTDT-GFLSTAPTLAV 524
Query: 575 GLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVS 634
+ + L+Q+H +R + + +P P+H SI A + V+
Sbjct: 525 QQLGEDSLIQVHPRGIRHILADRRVN------EWPA-----PQHRSIVAAATNERQVAVA 573
Query: 635 TSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSS 694
S+ ++ E+ ++ ERR+ S ++ +S
Sbjct: 574 LSSGEIVYF-----------------------EMDADGTLAEYDERRQMSGTVTCLSLGE 610
Query: 695 VPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGL-----RVLASGSIVLTNTMGTAISGC 749
V P G + +G +V +LS P L + L S L N M A S
Sbjct: 611 V---PEGRVRSSFLAVGCDDSTVRILSLDPDSTLENKSVQALTSAPSAL-NIMSMADSSS 666
Query: 750 IPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGI 809
Y+ GL +G+ LR
Sbjct: 667 --------GGTTLYLHIGLYSGVYLR---------------------------------- 684
Query: 810 AATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWL 860
DE+ L TR +G PV L +S ++ALS RPWL
Sbjct: 685 ------TVLDEVTGELSDTRTRFLGAKPVKLFRVSVKGQTAVLALSSRPWL 729
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 76 GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHR 135
G + + Q VFG I+ LA F S KD +++ SDSG+++ + + +R
Sbjct: 54 GKITPIYSQDVFGIIRTLAA------FRLAGSS---KDYIIIGSDSGRITIIEYVPSQNR 104
Query: 136 FFPVAQVHLSNPGNS---RHQLGRMLAVDSSG--CLIA 168
F ++HL G S R G+ LAVD G CLIA
Sbjct: 105 F---NRIHLETFGKSGVRRVVPGQYLAVDPKGRACLIA 139
>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2
Length = 1216
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 133/325 (40%), Gaps = 55/325 (16%)
Query: 461 YTSPIQNIA---------PILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKL 511
Y P +N+A P++D+ V + +E Q++ G + R+++ G+ + ++
Sbjct: 407 YPRPTENLALVESIDSMNPLMDLKVANLTEEDAPQIYTVSGKGARSTFRMLKHGLEVNEI 466
Query: 512 LRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCT 571
+ + + + WT +++ D Y +++VLSF T VL +G +V+D+ GF V T
Sbjct: 467 V-ASQLPGTPSAVWTTKLRRDDEYDAYIVLSFTNGTLVLSIGETVEEVSDT-GFLSSVPT 524
Query: 572 LACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSW-FPEHVSISLGAVAHNM 630
LA + D LVQ+H +R + V W P+H SI A
Sbjct: 525 LAVQQLGDDGLVQVHPKGIR-------------HIRNGVVNEWSSPQHRSIVAAATNERQ 571
Query: 631 IIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLV 690
+ V+ S+ ++ S++ Y+ E + M V
Sbjct: 572 VAVALSSGEIVYFEMDTDGSLAEYD--EKKEM------------------------FGTV 605
Query: 691 SNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCI 750
++ S+ +P G + +G +V +LS P+ L S S+ +A+S
Sbjct: 606 TSLSLGEVPEGRLRSSYLAVGCDDCTVRILSLDPES---TLESKSVQALTAAPSALSIMS 662
Query: 751 PQDVRLVLADQFYVLAGLRNGMLLR 775
+D Y+ GL +G+ LR
Sbjct: 663 MEDSS-SGGTTLYLHIGLNSGVYLR 686
Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 76 GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHR 135
G V + VFG I+DLA F S KD L++ SDSG+++ + + +R
Sbjct: 54 GKVVPLMSHDVFGIIRDLA------SFRLAGSS---KDYLIIASDSGRITIVEYLPAQNR 104
Query: 136 FFPVAQVHLSNPGNS---RHQLGRMLAVDSSG--CLIA 168
F +++HL G S R G+ LA D G CLIA
Sbjct: 105 F---SRIHLETFGKSGVRRVVPGQYLAADPKGRACLIA 139
>sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1
PE=3 SV=2
Length = 1209
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/412 (21%), Positives = 155/412 (37%), Gaps = 97/412 (23%)
Query: 455 ENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRT 514
EN LV I ++ P++D VV+ ++ Q+F G + R ++ G+ + +++ +
Sbjct: 409 ENLNLV--EAINSLNPLVDSKVVNISEDDAPQIFTVSGTGARSTFRTLKHGLEVSEIVES 466
Query: 515 APIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLAC 574
+ + WT ++ +D + +++VLSF T VL +G +VTD+ GF TLA
Sbjct: 467 E-LPSVPSAVWTTKLTRADEFDAYIVLSFANGTLVLSIGETVEEVTDT-GFLSSAPTLAV 524
Query: 575 GLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVS 634
+ + L+QIH +R + + +P P+H SI A + V+
Sbjct: 525 QQLGEDSLIQIHPRGIRHILADRRVN------EWPA-----PQHRSIVAAATNERQVAVA 573
Query: 635 TSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSS 694
S+ ++ EL ++ ERR+ S ++ +S
Sbjct: 574 LSSGEIVYF-----------------------ELDADGSLAEYDERRQMSGTVTCLSLGE 610
Query: 695 VPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLR------VLASGSIVLTNTMGTAISG 748
V P G + +G +V +LS P L + A+ S + M + SG
Sbjct: 611 V---PEGRVRSSFLAVGCDDSTVRILSLDPDTTLENKSVQALTAAPSALNIIAMADSSSG 667
Query: 749 CIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSG 808
Y+ GL +G+ LR
Sbjct: 668 ----------GTTLYLHIGLHSGVYLR--------------------------------- 684
Query: 809 IAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWL 860
+ DE+ L TR +G V L +S + ++ALS RPWL
Sbjct: 685 -------TALDEVTGELSDTRTRFLGSKAVKLFQVSVTGQTAVLALSSRPWL 729
Score = 40.4 bits (93), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 76 GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHR 135
G V + Q VFG I+ LA F S KD +++ SDSG+++ + + +R
Sbjct: 54 GKVIPLYTQDVFGIIRTLAA------FRLAGSN---KDYIIIGSDSGRITIIEYVPSQNR 104
Query: 136 FFPVAQVHLSNPGNS---RHQLGRMLAVDSSG--CLIA 168
F ++HL G S R G+ LAVD G CLIA
Sbjct: 105 F---NRIHLETFGKSGVRRVVPGQYLAVDPKGRACLIA 139
>sp|B0M0P5|DDB1_DICDI DNA damage-binding protein 1 OS=Dictyostelium discoideum GN=repE
PE=1 SV=1
Length = 1181
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 96/469 (20%), Positives = 174/469 (37%), Gaps = 113/469 (24%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518
+ Y NI P++D VVD + + Q+ C G +GSLRIIR+GI + + + +
Sbjct: 378 VTYLEAFTNIGPVVDFCVVDAEKQGQAQIVTCSGTYRDGSLRIIRNGIGIAE--QASIEL 435
Query: 519 QGITGTWTVRMK---------------------VSDPYHSFLVLSFVEETRVLRVGLNFT 557
+GI G + + ++D +L+ SF+E T+VL
Sbjct: 436 EGIKGIFPINNNNNNNNNNNNNNNNNNNNNSNGITDSKDRYLITSFIECTKVLSFQGEEI 495
Query: 558 DVTDSVGFRPDVCTLACGLVAD-GLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP 616
+ T+ G + TL CG + LL+QI ++ L ++ + W
Sbjct: 496 EETEFEGLESNCSTLYCGTIDKLNLLIQITNVSINLIDSN----------TFKRVSQWNV 545
Query: 617 E-HVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQ 675
E I+L + + I++S F ++ S+ I ++ + L E+SCI I
Sbjct: 546 EPSRRINLVSTNQDQIVLSIDKSLLYF-----QINSSNKSIQLVKEIELPHEISCIDI-- 598
Query: 676 KHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGS 735
SP ++ + G+ T I P++E + P
Sbjct: 599 ---------SPFDSFMDTKSQLVSVGLWNDITLRI-FKLPTLEEIWKEP----------- 637
Query: 736 IVLTNTMGTAISGCIPQDVRLVLADQF-YVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSP 794
+G I +P+ + ++ D Y+ L +G L +F++
Sbjct: 638 ------LGGEI---LPRSILMISFDSIDYIFCSLGDGHLFKFQFD--------------- 673
Query: 795 ISATFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIAL 854
SSF+ D+ + L G P+ L ++ A+
Sbjct: 674 -----------------FSSFKLFDKRKLTL--------GTQPIILKKFKLKNTINIFAI 708
Query: 855 SDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
SDRP ++ + L Y+ ++ + T+ T S P + NSL +
Sbjct: 709 SDRPTVIYSHNKKLFYSVVNLKDVTNVTSFNSDGFPNSMAIATTNSLTI 757
Score = 39.7 bits (91), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 30 IHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGT 89
++ V K + V G+ P +++ K T IE+ ++ +DG+ + + + ++G
Sbjct: 1 MYNFVSTVQKPTSVTHSVTGNFTGPNDKNLIISKCTKIEIFLMDQDGL-KPMFDVNIYGR 59
Query: 90 IKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGN 149
I L K F+ S+ +D L + ++S K LA+ E A + +
Sbjct: 60 ISVL------KLFSVAGSK---QDYLFISTESFKFCILAYDYEKKEIITKASGNAEDTIG 110
Query: 150 SRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSL 181
+ G++ +D G ++A+ YE L L +L
Sbjct: 111 RPTEAGQLGIIDPDGRIVALHLYEGLLKLITL 142
>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rse-1 PE=3 SV=2
Length = 1209
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 19/227 (8%)
Query: 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518
LV I ++ P +D V + E Q+++ CG + R+++ G+ + +++ + +
Sbjct: 414 LVLVESIDSMNPQVDCKVANLTGEDAPQIYSVCGNGARSTFRMLKHGLEVSEIV-ASELP 472
Query: 519 QGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVA 578
+ WT ++ D Y +++VLSF T VL +G +V+DS GF TLA +
Sbjct: 473 GTPSAVWTTKLTKYDQYDAYIVLSFTNGTLVLSIGETVEEVSDS-GFLTTAPTLAVQQMG 531
Query: 579 DGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNP 638
+ L+Q+H +R + V +P P+H SI N ++++ S+
Sbjct: 532 EDGLIQVHPKGIRHIVQGRVNE-------WPA-----PQHRSIVAATANENQVVIALSSG 579
Query: 639 CFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSS 685
++ S++ Y+ + + ++ +S+ Q PE K SS
Sbjct: 580 EIVYFEMDSDGSLAEYD----EKKEMSGTVTSLSVGQV-PEGLKRSS 621
>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum
GN=sf3b3 PE=3 SV=1
Length = 1256
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 454 EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLR 513
EE L TS + +++PI+D V+D E+ Q+++ CG SL+++R G+S+ +
Sbjct: 403 EELKNLEPTSHLSSLSPIIDFKVLDLVREENPQLYSLCGTGLNSSLKVLRHGLSV-TTIT 461
Query: 514 TAPIYQGITGTWTVRMKVS----DPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDV 569
TA + +G WTV S D ++V+SFV T VL VG + +S G
Sbjct: 462 TANLPGVPSGIWTVPKSTSPNAIDQTDKYIVVSFVGTTSVLSVGDTIQENHES-GILETT 520
Query: 570 CTLACGLVADGLLVQIHQNAVR 591
TL + D ++Q+ R
Sbjct: 521 TTLLVKSMGDDAIIQVFPTGFR 542
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 31/213 (14%)
Query: 32 YLAKCVLKG-SVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTI 90
YL L+ + V Q G+ ++V S+EL+ E+G +QSV VFG +
Sbjct: 2 YLYNLTLQRPTSVYQSISGNFSGTKQVEIVLNHGRSLELIRYDENGKMQSVLYTEVFGIV 61
Query: 91 KDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNS 150
+ +++P+ KD ++V SDSG++ L + ++ ++F + Q G
Sbjct: 62 R--SIIPFRLTSGT-------KDYIIVGSDSGRVVILEYNSQKNQFDKIHQETFGRSGCR 112
Query: 151 RHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPSESEVDTSASRIA 210
R G+ LAVD G + A E + ++ L+ S +++ I P E+
Sbjct: 113 RIVPGQYLAVDPKGRAFMIGAIEKQKLVYILNRDSSANLT---ISSPLEAH--------- 160
Query: 211 QKNSISGTIWSMCFISTDPRQPSKEHNPILAII 243
+ N+I ++SMC + NPI A I
Sbjct: 161 KSNTI---VFSMCGVDVGF------DNPIFATI 184
Score = 37.0 bits (84), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 805 IRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTA 864
+++G+ ++ +S + L I TR +G PV L + M+ALS R WL
Sbjct: 707 LKNGVVKRATLDS---VTGELSDIRTRLLGRKPVKLFKVKVRGSNAMLALSSRVWLNYIN 763
Query: 865 RHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSL 901
+ L +S +P +A+ + S + + I+ +EN +
Sbjct: 764 QGKLDIVPLSIEPLENASNLSSEQSAESIVATSENKI 800
>sp|Q21554|DDB1_CAEEL DNA damage-binding protein 1 OS=Caenorhabditis elegans GN=ddb-1
PE=1 SV=2
Length = 1134
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 110/241 (45%), Gaps = 28/241 (11%)
Query: 446 MGDGMVLK---EENG--RLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLR 500
+GD +++ E NG V NI PI DM +V+ + + Q+ C G +GSLR
Sbjct: 325 LGDSQLIRLMTEPNGGSYSVILETYSNIGPIRDMVMVE--SDGQPQLVTCTGADKDGSLR 382
Query: 501 IIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRV-GLNFTDV 559
+IR+GI +++L G+ G + +R+ + +++++S +ET VL++ G DV
Sbjct: 383 VIRNGIGIDELASVD--LAGVVGIFPIRLDSN--ADNYVIVSLSDETHVLQITGEELEDV 438
Query: 560 TDSVGFRPDVCTLAC----GLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF 615
+ D+ T+ G G+++Q + +RL S G+ +
Sbjct: 439 K-LLEINTDLPTIFASTLFGPNDSGIILQATEKQIRLM------SSSGLSKFWEPTNGEI 491
Query: 616 PEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQ 675
VS++ A+ I+++ + +L V + +I + ++E++C+ +
Sbjct: 492 ISKVSVN---AANGQIVLAARDTVYLLTCIVDEMGA--LDIQLTAEKKFENEIACLDLSN 546
Query: 676 K 676
+
Sbjct: 547 E 547
>sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RSE1 PE=3 SV=2
Length = 1256
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 32 YLAKCVLK--GSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFG 88
YL +K S + + L + S +++ TSIEL + G ++ + +QA FG
Sbjct: 9 YLYNLTIKHPSSCIASIVGQFLGNKKSQEIILANSTSIELWKADSNTGKLEKIYQQASFG 68
Query: 89 TIKDLAVVPWNKKFNAQNSQVMG--KDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSN 146
I+ + + +++G KD +V+ SDSGKL L F E +F P+ Q S
Sbjct: 69 IIQGIDKI-----------RLVGTQKDYVVITSDSGKLVVLEFDIEKLQFVPLFQEPHSK 117
Query: 147 PGNSRHQLGRMLAVDSSGCLIAVSAYE 173
G R G L VD I + A E
Sbjct: 118 NGLRRTSPGEYLCVDPHNRAILIGAIE 144
>sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1
OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2
Length = 1442
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 459 LVYTSPIQNIAPIL----DMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRT 514
LV P+++ A L D + + ++ C G G+L ++R I E + T
Sbjct: 511 LVNVGPVKDFAYGLRINADANATGVSKQSNYELVCCSGHGKNGALCVLRQSIRPEMI--T 568
Query: 515 APIYQGITGTWTVRMKVS--------------DPYHSFLVLSFVEETRVLRVGLNFTDVT 560
G G WTV K S D YH++L++S T VL T+VT
Sbjct: 569 EVELPGCKGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEARTMVLETADLLTEVT 628
Query: 561 DSVGFRPDVCTLACG-LVADGLLVQIHQNAVRL 592
+SV + T+A G L ++Q+ ++ R+
Sbjct: 629 ESVDYYVQGRTIAAGNLFGRRRVIQVFEHGARI 661
>sp|O13807|DDB1_SCHPO DNA damage-binding protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ddb1 PE=1 SV=1
Length = 1072
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 452 LKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKL 511
+ + N +L NIAPI D + D D+ + C G +G+LRIIR+ I++E +
Sbjct: 341 ITKNNHKLEILQNFVNIAPISDFIIDD--DQTGSSIITCSGAYKDGTLRIIRNSINIENV 398
Query: 512 LRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRV 552
+GI ++V + + Y +++ LS + ETR + V
Sbjct: 399 ALIE--MEGIKDFFSVSFRAN--YDNYIFLSLICETRAIIV 435
>sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RSE1 PE=3 SV=1
Length = 1219
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 32 YLAKCVLK------GSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQ 84
YL LK S+V Q + + +V T+++L I E+ G ++ Q
Sbjct: 41 YLYNLTLKPPSYYISSIVGQFYKQDNSTKNAQQLVLVSSTTLQLFEINEEAGKLELQSSQ 100
Query: 85 AVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHL 144
+ G I + + S+V G +V+ SDSG LS L + N+ +F Q +
Sbjct: 101 NLLGIINSIEKICL--------SEVDG---VVITSDSGNLSILQYDNKTKKFISKIQEPM 149
Query: 145 SNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSL-SMSSGSDIIDKKICYPSES 200
+ G R+ +G LA+D I V+A E + + S SSGS K++ P E+
Sbjct: 150 TKNGWGRNYVGENLAIDPENRCILVAAMEKNKLFYKIESNSSGS----KELSSPLEA 202
>sp|Q7XWP1|CPSF1_ORYSJ Probable cleavage and polyadenylation specificity factor subunit 1
OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3
SV=2
Length = 1441
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 486 QMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTV-------RMKVSDPYHSF 538
++ C G GSL +++ I + L T G WTV +M + YH++
Sbjct: 545 ELVCCSGHGKNGSLSVLQQSIRPD--LITEVELPSCRGIWTVYYKSYRGQMAEDNEYHAY 602
Query: 539 LVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACG-LVADGLLVQIHQNAVRL 592
L++S T VL G + +VT++V + T+A G L ++Q++ R+
Sbjct: 603 LIISLENRTMVLETGDDLGEVTETVDYFVQASTIAAGNLFGRRRVIQVYGKGARV 657
>sp|Q753D4|RSE1_ASHGO Pre-mRNA-splicing factor RSE1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RSE1 PE=3
SV=2
Length = 1288
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 59 VVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVI 118
+ +T +EL + E+G ++ + + VFGTI L+ V + G+ +L+V+
Sbjct: 58 ICMATQTQVELYDV-EEGRLRRLFTRTVFGTITGLSSVVAD-----------GRSVLIVV 105
Query: 119 SDSGKLSFLAFCNEMHRFFPVAQVH--LSNPGNSRHQLGRMLAVDSSGCLIAVSAYE 173
DSGK+S L F E R A + LS G R ++VD G + +SA E
Sbjct: 106 GDSGKMSVLRFKYEGGRVRLEALFNEPLSRSGVRRLSPQAHVSVDPQGRCVLLSAME 162
>sp|Q6FLQ6|RSE1_CANGA Pre-mRNA-splicing factor RSE1 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RSE1
PE=3 SV=1
Length = 1296
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 80/152 (52%), Gaps = 16/152 (10%)
Query: 499 LRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRV-LRVGLN-- 555
+ IIR+ I L++ + ++P+ QG++ +T++ + YHSF+ L+ + T V L++ +
Sbjct: 429 VNIIRNAIPLKEYV-SSPLPQGVSNIFTIKTQYQ-SYHSFIFLTMINFTTVILKIADDSI 486
Query: 556 --FTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTS 613
+ +D+ + D+ T+ + D ++Q+ ++ R + ++ +
Sbjct: 487 EQYIPASDTFKLKDDM-TIHVATMGDNSIIQVCKDEFRQILLDSKDEE-----NFKMNLK 540
Query: 614 WF-PEHVSISLGAVAH-NMIIVSTSNPCFLFI 643
W+ P VSI L AV++ + +I++ SN +++
Sbjct: 541 WYPPAGVSI-LSAVSNFSQLILALSNNEIVYL 571
>sp|P49150|URTG_DESRO Salivary plasminogen activator gamma OS=Desmodus rotundus PE=1 SV=1
Length = 394
Score = 33.5 bits (75), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 322 LPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCI-DSDS 369
+ P EEQ F E C VH+ D+ +N ALL+L+ P C +SDS
Sbjct: 210 VKPGKEEQTFEVEKCIVHEEFDDDTYNNDI-ALLQLKSGSPQCAQESDS 257
>sp|P15638|URT2_DESRO Salivary plasminogen activator alpha 2 OS=Desmodus rotundus PE=1
SV=2
Length = 477
Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 322 LPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCI-DSDS 369
+ P EEQ F E C VH+ D+ +N ALL+L+ P C +SDS
Sbjct: 293 VKPGKEEQTFEVEKCIVHEEFDDDTYNNDI-ALLQLKSGSPQCAQESDS 340
>sp|C6E791|COAX_GEOSM Type III pantothenate kinase OS=Geobacter sp. (strain M21) GN=coaX
PE=3 SV=1
Length = 254
Score = 33.1 bits (74), Expect = 9.1, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 684 SSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMG 743
+ P S+++ ++V ++ AG+ GY +G V+ + KE +V+A+G +
Sbjct: 174 ARPPSIIAKNTVNSMQAGIFFGY---VGLVDGIVQRMKGEGKENPKVIATGGLA------ 224
Query: 744 TAISGCIPQDVRLVLADQFYVLAGLR 769
S P+ V + D+F L GLR
Sbjct: 225 ---SLIAPESVTIEEVDEFLTLEGLR 247
>sp|B5EF22|COAX_GEOBB Type III pantothenate kinase OS=Geobacter bemidjiensis (strain Bem
/ ATCC BAA-1014 / DSM 16622) GN=coaX PE=3 SV=1
Length = 254
Score = 33.1 bits (74), Expect = 9.1, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 684 SSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMG 743
+ P S+++ ++V ++ AG+ GY +G V+ + KE +V+A+G +
Sbjct: 174 ARPPSIIAKNTVNSMQAGIFFGY---VGLVDGIVQRMKGEGKENPKVIATGGLA------ 224
Query: 744 TAISGCIPQDVRLVLADQFYVLAGLR 769
S P+ V + D+F L GLR
Sbjct: 225 ---SLIAPESVTIEEVDEFLTLEGLR 247
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,145,532
Number of Sequences: 539616
Number of extensions: 14034913
Number of successful extensions: 30365
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 30242
Number of HSP's gapped (non-prelim): 96
length of query: 903
length of database: 191,569,459
effective HSP length: 127
effective length of query: 776
effective length of database: 123,038,227
effective search space: 95477664152
effective search space used: 95477664152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)