Query 044070
Match_columns 903
No_of_seqs 189 out of 626
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 11:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1897 Damage-specific DNA bi 100.0 3E-106 7E-111 922.9 70.8 684 30-903 1-697 (1096)
2 KOG1898 Splicing factor 3b, su 100.0 4E-106 8E-111 925.2 51.0 700 30-903 1-755 (1205)
3 KOG1896 mRNA cleavage and poly 100.0 3.1E-74 6.6E-79 669.2 65.4 771 30-902 1-931 (1366)
4 PF10433 MMS1_N: Mono-function 100.0 1.9E-63 4E-68 586.2 50.0 470 113-675 1-503 (504)
5 COG5161 SFT1 Pre-mRNA cleavage 100.0 6.4E-43 1.4E-47 393.6 39.3 544 30-646 1-657 (1319)
6 KOG0291 WD40-repeat-containing 96.2 4.5 9.7E-05 48.5 34.9 316 391-779 67-422 (893)
7 KOG0318 WD40 repeat stress pro 95.4 6.9 0.00015 45.2 36.4 81 660-780 438-518 (603)
8 KOG2048 WD40 repeat protein [G 94.4 4.5 9.8E-05 47.9 20.6 136 28-183 370-506 (691)
9 PF08596 Lgl_C: Lethal giant l 92.8 1.6 3.4E-05 50.2 13.8 71 705-781 97-175 (395)
10 cd00200 WD40 WD40 domain, foun 92.2 16 0.00034 37.8 30.8 256 391-721 21-289 (289)
11 PF14727 PHTB1_N: PTHB1 N-term 92.1 27 0.00059 40.4 26.5 229 35-306 66-317 (418)
12 KOG1274 WD40 repeat protein [G 92.1 31 0.00067 42.6 23.4 79 391-477 25-105 (933)
13 KOG0646 WD40 repeat protein [G 92.1 5.2 0.00011 45.4 16.0 59 392-455 93-153 (476)
14 KOG2110 Uncharacterized conser 92.1 6.6 0.00014 43.5 16.4 23 761-783 312-334 (391)
15 KOG2111 Uncharacterized conser 91.5 25 0.00053 38.5 22.5 78 617-726 180-259 (346)
16 PF10282 Lactonase: Lactonase, 91.0 31 0.00067 38.8 36.2 278 440-784 2-327 (345)
17 KOG2321 WD40 repeat protein [G 90.7 4.6 9.9E-05 47.0 14.1 71 705-780 187-259 (703)
18 PF14783 BBS2_Mid: Ciliary BBS 90.4 5.8 0.00013 36.8 12.0 57 705-779 15-71 (111)
19 KOG2110 Uncharacterized conser 90.2 14 0.0003 41.1 16.5 154 571-781 89-250 (391)
20 KOG0647 mRNA export protein (c 89.9 5.8 0.00013 42.8 13.2 76 665-779 27-102 (347)
21 PF03178 CPSF_A: CPSF A subuni 89.5 25 0.00053 39.1 19.0 105 57-183 99-203 (321)
22 KOG0276 Vesicle coat complex C 89.0 57 0.0012 38.8 22.0 109 430-555 187-300 (794)
23 KOG2055 WD40 repeat protein [G 88.3 54 0.0012 37.6 23.3 161 54-276 223-386 (514)
24 PF10282 Lactonase: Lactonase, 88.2 18 0.00038 40.8 16.8 104 62-184 10-119 (345)
25 KOG2114 Vacuolar assembly/sort 88.1 30 0.00065 42.6 18.7 122 620-780 27-156 (933)
26 KOG0310 Conserved WD40 repeat- 88.0 6.5 0.00014 44.9 12.6 112 617-777 195-307 (487)
27 cd00200 WD40 WD40 domain, foun 87.8 36 0.00078 35.0 30.3 265 430-776 13-288 (289)
28 KOG1539 WD repeat protein [Gen 86.9 87 0.0019 38.6 24.4 246 458-780 26-276 (910)
29 KOG0306 WD40-repeat-containing 86.7 27 0.00058 42.3 17.0 114 628-781 424-540 (888)
30 KOG0316 Conserved WD40 repeat- 85.3 48 0.001 34.9 16.0 136 587-780 38-174 (307)
31 KOG0279 G protein beta subunit 85.0 36 0.00078 36.6 15.4 68 705-779 245-313 (315)
32 COG2706 3-carboxymuconate cycl 84.9 70 0.0015 35.6 19.2 194 45-284 146-346 (346)
33 PF00780 CNH: CNH domain; Int 84.8 61 0.0013 34.8 24.2 148 435-597 5-166 (275)
34 PF14727 PHTB1_N: PTHB1 N-term 83.9 91 0.002 36.2 21.6 56 831-886 235-291 (418)
35 PRK11028 6-phosphogluconolacto 83.9 17 0.00038 40.3 13.9 100 63-183 10-111 (330)
36 PRK11028 6-phosphogluconolacto 83.3 79 0.0017 35.0 34.9 67 705-783 239-308 (330)
37 KOG0306 WD40-repeat-containing 83.2 32 0.0007 41.7 15.6 55 655-737 498-552 (888)
38 KOG1897 Damage-specific DNA bi 82.9 1.4E+02 0.0031 37.7 23.0 178 437-671 451-634 (1096)
39 KOG2096 WD40 repeat protein [G 82.6 35 0.00075 37.4 14.2 81 663-780 84-164 (420)
40 KOG0279 G protein beta subunit 81.6 82 0.0018 34.0 17.6 97 588-727 85-184 (315)
41 PF12894 Apc4_WD40: Anaphase-p 80.3 4.1 8.9E-05 31.7 4.9 37 659-723 5-41 (47)
42 KOG0266 WD40 repeat-containing 79.4 45 0.00098 39.1 15.7 115 620-780 248-365 (456)
43 PF03178 CPSF_A: CPSF A subuni 79.3 1.1E+02 0.0023 33.9 18.4 124 34-183 17-158 (321)
44 KOG0291 WD40-repeat-containing 79.0 1.7E+02 0.0036 35.9 53.5 100 55-181 25-124 (893)
45 KOG2096 WD40 repeat protein [G 78.4 28 0.00061 38.0 12.0 57 157-227 233-289 (420)
46 KOG0266 WD40 repeat-containing 76.2 1.7E+02 0.0036 34.4 19.6 73 663-779 244-318 (456)
47 TIGR03300 assembly_YfgL outer 76.1 1.4E+02 0.0031 33.7 29.1 72 391-471 65-137 (377)
48 KOG0646 WD40 repeat protein [G 75.8 64 0.0014 37.0 14.4 107 623-779 45-153 (476)
49 PF00400 WD40: WD domain, G-be 74.6 7 0.00015 28.2 4.7 31 663-721 9-39 (39)
50 KOG0318 WD40 repeat stress pro 74.4 1.8E+02 0.004 34.1 20.1 185 485-726 333-520 (603)
51 PF11768 DUF3312: Protein of u 73.0 1.1E+02 0.0024 36.3 16.0 77 659-779 253-329 (545)
52 KOG0283 WD40 repeat-containing 72.0 14 0.0003 44.9 8.6 112 620-780 371-482 (712)
53 KOG1274 WD40 repeat protein [G 71.9 2.3E+02 0.0049 35.6 18.5 72 621-727 99-172 (933)
54 KOG0263 Transcription initiati 71.9 1.2E+02 0.0025 37.1 16.0 109 571-724 529-650 (707)
55 PF00780 CNH: CNH domain; Int 70.4 1.6E+02 0.0034 31.6 22.8 214 391-638 7-248 (275)
56 KOG3881 Uncharacterized conser 68.9 2.1E+02 0.0045 32.4 17.3 206 436-728 114-325 (412)
57 PTZ00421 coronin; Provisional 67.9 91 0.002 37.1 14.4 61 705-779 138-198 (493)
58 KOG1539 WD repeat protein [Gen 67.4 3.2E+02 0.0069 34.0 27.1 73 619-727 203-279 (910)
59 KOG0771 Prolactin regulatory e 67.3 28 0.00061 39.2 9.2 24 705-728 293-316 (398)
60 KOG0305 Anaphase promoting com 65.5 62 0.0014 38.0 12.0 102 628-780 188-289 (484)
61 KOG0315 G-protein beta subunit 65.4 1.5E+02 0.0032 31.7 13.3 63 705-780 136-198 (311)
62 KOG0296 Angio-associated migra 64.5 66 0.0014 35.9 11.1 112 618-778 106-219 (399)
63 KOG0645 WD40 repeat protein [G 63.8 1.1E+02 0.0024 32.9 12.2 41 663-731 103-143 (312)
64 KOG0294 WD40 repeat-containing 63.7 68 0.0015 35.2 10.8 115 30-174 34-148 (362)
65 PLN00181 protein SPA1-RELATED; 63.5 4E+02 0.0086 33.7 30.9 73 705-778 720-792 (793)
66 KOG0315 G-protein beta subunit 62.8 1.2E+02 0.0026 32.4 12.1 62 705-781 95-156 (311)
67 KOG0294 WD40 repeat-containing 62.3 19 0.00041 39.3 6.4 62 705-779 53-115 (362)
68 PLN00181 protein SPA1-RELATED; 62.2 1E+02 0.0022 38.9 14.4 62 705-780 588-649 (793)
69 KOG1517 Guanine nucleotide bin 62.1 3.1E+02 0.0068 35.2 17.2 147 587-779 1230-1381(1387)
70 PF08728 CRT10: CRT10; InterP 62.0 1.4E+02 0.0029 37.0 14.3 141 56-227 49-221 (717)
71 PF14783 BBS2_Mid: Ciliary BBS 60.5 1.3E+02 0.0028 28.1 10.8 90 629-773 16-108 (111)
72 KOG0293 WD40 repeat-containing 60.2 1.6E+02 0.0035 33.5 13.2 153 521-725 354-515 (519)
73 KOG0647 mRNA export protein (c 59.4 1.9E+02 0.004 31.8 13.1 111 58-199 85-198 (347)
74 PF12341 DUF3639: Protein of u 59.3 17 0.00037 24.8 3.5 16 706-721 12-27 (27)
75 KOG1240 Protein kinase contain 59.2 4.4E+02 0.0096 34.5 18.0 136 609-781 1089-1227(1431)
76 PF14779 BBS1: Ciliary BBSome 59.2 40 0.00087 36.2 8.3 50 88-147 177-226 (257)
77 KOG1407 WD40 repeat protein [F 58.6 2.7E+02 0.0058 30.1 15.5 59 705-779 159-219 (313)
78 KOG1273 WD40 repeat protein [G 58.0 2.8E+02 0.0062 30.6 14.2 69 628-731 35-103 (405)
79 KOG0277 Peroxisomal targeting 57.5 2.7E+02 0.0059 29.9 16.1 63 458-529 50-112 (311)
80 KOG0277 Peroxisomal targeting 57.4 50 0.0011 35.2 8.3 68 627-728 72-140 (311)
81 PRK11138 outer membrane biogen 57.1 3.4E+02 0.0074 30.9 23.3 68 391-466 120-187 (394)
82 KOG0641 WD40 repeat protein [G 56.5 24 0.00053 36.5 5.8 97 113-227 45-147 (350)
83 KOG2048 WD40 repeat protein [G 56.2 4.5E+02 0.0097 32.0 43.0 113 39-179 24-137 (691)
84 PF14779 BBS1: Ciliary BBSome 56.2 72 0.0016 34.3 9.6 58 705-776 195-255 (257)
85 PTZ00421 coronin; Provisional 55.7 4.2E+02 0.0091 31.5 24.4 22 705-726 180-201 (493)
86 KOG0283 WD40 repeat-containing 55.6 1.4E+02 0.0031 36.6 12.8 178 537-780 381-577 (712)
87 KOG2055 WD40 repeat protein [G 55.5 3.9E+02 0.0084 31.1 17.9 103 628-779 315-417 (514)
88 PF06433 Me-amine-dh_H: Methyl 55.5 1.4E+02 0.0031 33.4 12.0 82 612-727 233-324 (342)
89 KOG0282 mRNA splicing factor [ 55.2 2.7E+02 0.0059 32.4 14.2 124 438-585 313-438 (503)
90 KOG0289 mRNA splicing factor [ 54.1 4E+02 0.0086 30.7 17.0 49 619-675 390-442 (506)
91 KOG0299 U3 snoRNP-associated p 53.4 2.5E+02 0.0054 32.5 13.5 21 705-725 392-412 (479)
92 KOG0649 WD40 repeat protein [G 52.8 3.2E+02 0.0069 29.2 17.2 104 391-505 126-237 (325)
93 KOG0289 mRNA splicing factor [ 52.3 1.7E+02 0.0037 33.5 11.9 111 623-780 310-420 (506)
94 KOG0278 Serine/threonine kinas 52.2 2.4E+02 0.0053 30.1 12.2 142 579-781 155-299 (334)
95 PRK11138 outer membrane biogen 52.2 4.1E+02 0.0088 30.3 28.3 59 705-778 335-393 (394)
96 KOG0316 Conserved WD40 repeat- 52.0 3.2E+02 0.0069 29.1 17.1 112 620-780 147-258 (307)
97 PTZ00420 coronin; Provisional 51.5 5.2E+02 0.011 31.4 17.3 60 705-779 138-197 (568)
98 PF02239 Cytochrom_D1: Cytochr 51.3 3.8E+02 0.0083 30.5 15.3 98 588-731 16-116 (369)
99 KOG0273 Beta-transducin family 50.6 4.7E+02 0.01 30.5 17.1 221 431-726 237-485 (524)
100 KOG0288 WD40 repeat protein Ti 48.4 1.2E+02 0.0025 34.6 9.8 22 705-726 399-420 (459)
101 KOG1538 Uncharacterized conser 47.8 6E+02 0.013 31.0 18.1 174 52-261 20-212 (1081)
102 KOG0285 Pleiotropic regulator 47.1 58 0.0013 36.2 7.1 63 705-781 163-225 (460)
103 KOG0268 Sof1-like rRNA process 46.6 3.9E+02 0.0084 30.2 13.3 60 706-779 285-345 (433)
104 KOG2106 Uncharacterized conser 45.8 5.7E+02 0.012 30.1 26.8 265 379-726 203-480 (626)
105 KOG0301 Phospholipase A2-activ 45.8 4.7E+02 0.01 31.9 14.6 183 620-896 63-284 (745)
106 KOG1407 WD40 repeat protein [F 45.7 1.7E+02 0.0037 31.5 10.0 58 110-177 157-214 (313)
107 KOG1587 Cytoplasmic dynein int 44.9 5E+02 0.011 31.4 15.2 82 660-780 237-324 (555)
108 KOG2445 Nuclear pore complex c 44.2 84 0.0018 34.4 7.7 79 38-130 170-256 (361)
109 PTZ00420 coronin; Provisional 43.3 6.9E+02 0.015 30.4 29.0 23 705-727 179-201 (568)
110 KOG0649 WD40 repeat protein [G 42.8 4.5E+02 0.0098 28.1 18.3 110 437-586 22-142 (325)
111 KOG0771 Prolactin regulatory e 42.1 1.1E+02 0.0023 34.9 8.4 112 54-183 196-312 (398)
112 KOG3621 WD40 repeat-containing 40.7 1.4E+02 0.0031 36.2 9.5 115 619-780 36-155 (726)
113 KOG1036 Mitotic spindle checkp 38.7 4.9E+02 0.011 28.7 12.4 112 56-181 145-261 (323)
114 KOG0270 WD40 repeat-containing 38.6 4.4E+02 0.0095 30.4 12.5 78 663-780 284-361 (463)
115 KOG4649 PQQ (pyrrolo-quinoline 37.0 5.8E+02 0.012 27.7 13.1 134 586-780 31-166 (354)
116 KOG0276 Vesicle coat complex C 37.0 3.2E+02 0.007 32.9 11.5 62 705-780 25-86 (794)
117 KOG1445 Tumor-specific antigen 35.7 8.9E+02 0.019 29.4 16.3 59 833-899 810-871 (1012)
118 KOG1645 RING-finger-containing 33.5 1.2E+02 0.0026 34.5 7.0 65 705-783 206-270 (463)
119 PF08553 VID27: VID27 cytoplas 33.4 2.5E+02 0.0054 35.4 10.6 98 581-721 495-604 (794)
120 KOG0645 WD40 repeat protein [G 33.4 6.7E+02 0.014 27.3 20.1 129 437-578 73-204 (312)
121 PF14781 BBS2_N: Ciliary BBSom 32.6 3.7E+02 0.0081 26.0 9.3 75 48-134 3-83 (136)
122 KOG0295 WD40 repeat-containing 32.0 2.7E+02 0.0059 31.3 9.4 62 705-780 304-365 (406)
123 KOG3679 Predicted coiled-coil 31.8 77 0.0017 35.1 5.2 57 830-887 193-251 (802)
124 KOG0278 Serine/threonine kinas 31.1 3.8E+02 0.0082 28.8 9.8 77 657-779 176-254 (334)
125 PF14781 BBS2_N: Ciliary BBSom 31.0 5E+02 0.011 25.2 10.7 86 39-139 46-133 (136)
126 KOG0650 WD40 repeat nucleolar 30.4 1.7E+02 0.0036 35.0 7.8 27 705-731 412-438 (733)
127 KOG0269 WD40 repeat-containing 29.9 3E+02 0.0064 34.0 9.9 161 45-263 43-208 (839)
128 KOG0973 Histone transcription 29.2 6E+02 0.013 32.5 12.7 121 46-181 71-200 (942)
129 KOG0286 G-protein beta subunit 28.3 8.3E+02 0.018 26.9 19.0 60 706-777 242-301 (343)
130 KOG0293 WD40 repeat-containing 28.3 4.5E+02 0.0098 30.2 10.3 122 610-778 345-469 (519)
131 smart00320 WD40 WD40 repeats. 28.1 91 0.002 20.2 3.6 16 706-721 25-40 (40)
132 PRK12784 hypothetical protein; 27.5 2.2E+02 0.0047 24.7 6.0 50 393-445 33-84 (84)
133 KOG0296 Angio-associated migra 27.3 9.4E+02 0.02 27.3 12.4 110 621-780 67-179 (399)
134 KOG1188 WD40 repeat protein [G 27.0 9.4E+02 0.02 27.0 16.2 194 535-782 39-245 (376)
135 KOG1034 Transcriptional repres 25.5 9.8E+02 0.021 26.8 13.6 162 470-723 40-211 (385)
136 PF12894 Apc4_WD40: Anaphase-p 24.5 1.5E+02 0.0033 23.0 4.4 40 78-130 2-41 (47)
137 KOG1446 Histone H3 (Lys4) meth 24.3 9.9E+02 0.022 26.4 19.5 64 705-779 199-262 (311)
138 PF11715 Nup160: Nucleoporin N 23.3 3.4E+02 0.0074 32.6 9.4 24 705-728 230-253 (547)
139 PF08553 VID27: VID27 cytoplas 23.2 6.9E+02 0.015 31.6 11.9 49 620-675 579-628 (794)
140 KOG0319 WD40-repeat-containing 22.8 9.7E+02 0.021 29.6 12.4 160 45-259 194-353 (775)
141 KOG0288 WD40 repeat protein Ti 22.6 1.2E+03 0.026 26.8 12.8 96 66-183 323-418 (459)
142 KOG0272 U4/U6 small nuclear ri 21.8 1.3E+03 0.028 26.7 12.4 60 705-777 357-416 (459)
143 KOG0270 WD40 repeat-containing 21.6 7.6E+02 0.016 28.6 10.7 83 610-726 322-407 (463)
144 KOG0299 U3 snoRNP-associated p 21.4 6.7E+02 0.015 29.1 10.2 99 391-495 338-448 (479)
145 KOG2445 Nuclear pore complex c 20.9 1.2E+03 0.025 26.0 17.4 120 564-724 20-145 (361)
146 KOG0286 G-protein beta subunit 20.3 71 0.0015 34.7 2.3 31 663-721 313-343 (343)
147 KOG0303 Actin-binding protein 20.0 1.4E+03 0.029 26.4 16.6 52 839-897 266-319 (472)
No 1
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=100.00 E-value=3.2e-106 Score=922.89 Aligned_cols=684 Identities=22% Similarity=0.351 Sum_probs=582.9
Q ss_pred eEEEEEEEecCCceeEEEEEEecCCCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCC
Q 044070 30 IHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQV 109 (903)
Q Consensus 30 ~~~~~~tl~~pt~V~~sl~g~f~~~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~ 109 (903)
|..|+.|+++||+|.+|+.|||+++...||+|||+|+||+|.++++| |+.+++.++||+|+.|+.|| |++
T Consensus 1 ~~~Y~vtaqkpT~V~~av~gnFts~e~~nlivAk~~~lei~~~~~~G-Lq~i~sv~ifg~I~~i~~fR---------p~g 70 (1096)
T KOG1897|consen 1 SMNYVVTAQKPTAVVTAVVGNFTSPENLNLIVAKGNRLEILLVEPNG-LQPITSVPIFGTIATIALFR---------PPG 70 (1096)
T ss_pred CeeEEEEecCCceEeEEEeecccCccceeeeeeccceEEEEeecccc-ceeeEeeccceeEEEEEeec---------CCC
Confidence 46799999999999999999999999999999999999999999999 99999999999999999996 799
Q ss_pred CCccEEEEEeCCCcEEEEEEeCCCcceEee-EEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeecCCCCc
Q 044070 110 MGKDLLVVISDSGKLSFLAFCNEMHRFFPV-AQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSD 188 (903)
Q Consensus 110 ~~~D~Llv~tds~~l~iL~~d~~~~~f~tv-~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~~~~~~ 188 (903)
.++|+|+|.|+++++++|+||.+..+.++. ++....|.| |+...|+|++|||++|.|+++.||+.++|+|+.+++ .
T Consensus 71 ~~kD~LfV~t~~~~~~iL~~d~~~~~vv~~a~~~v~dr~g-r~s~~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~-s- 147 (1096)
T KOG1897|consen 71 SDKDYLFVATDSYRYFILEWDEESIQVVTRAHGDVSDRSG-RPSDNGQILLVDPKGRVIGLHLYQGLFKVIPIDSDE-S- 147 (1096)
T ss_pred CCcceEEEEECcceEEEEEEccccceEEEEeccccccccc-ccCCCceEEEECCCCcEEEEEeecCeEEEEEecccc-c-
Confidence 999999999999999999999954444444 566666777 888999999999999999999999999999998742 1
Q ss_pred cccccccCCCCccccCcccceeeeccccccEEEEEEeeCCCCCCCCCCCcEEEEEEeecCCccceEEEEEEEccCCceee
Q 044070 189 IIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISV 268 (903)
Q Consensus 189 ~~~~~~~sP~~~e~~~s~~~~~~~~~~~~~i~dm~FL~~~~~~~~~~~~PtlavL~~~~~~~~~~l~~y~ldl~~~~~~v 268 (903)
.+. .+..+.|+++..+.+|.||+|||+ ...|++|+||++ .+.+|+++|++|+++++ .+
T Consensus 148 ---ht~---------~s~l~~fn~rfdel~v~Di~fly~-------~s~pt~~vly~D--s~~~Hv~~yelnl~~ke-~~ 205 (1096)
T KOG1897|consen 148 ---HTG---------GSLLKAFNVRFDELNVYDIKFLYG-------CSDPTLAVLYKD--SDGRHVKTYELNLRDKE-FV 205 (1096)
T ss_pred ---ccC---------cccccccccccCcceEEEEEEEcC-------CCCCceEEEEEc--CCCcEEEEEEeccchhh-cc
Confidence 111 223467778888999999999999 889999999998 37899999999999986 44
Q ss_pred eeeeecC-CCCcceEEeecCCCCceEEEeeCcEEEEecCCCCCCeeeeeccccCCCCcccccceeccccccccCCCcccc
Q 044070 269 LSCFFEA-GPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLF 347 (903)
Q Consensus 269 i~~~~~~-~~~~~~li~vP~~~ggvlv~~~~~il~i~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (903)
-..|+.+ ...+..+++||.+.||+||+|++.|+|++.. |
T Consensus 206 ~~~w~~~v~~~a~~li~VP~~~gGvlV~ge~~I~Y~~~~-------------~--------------------------- 245 (1096)
T KOG1897|consen 206 KGPWSNNVDNGASMLIPVPSPIGGVLVIGEEFIVYMSGD-------------N--------------------------- 245 (1096)
T ss_pred ccccccccccCCceeeecCCCCceEEEEeeeEEEEeeCC-------------c---------------------------
Confidence 4556533 3458999999999999999999999998763 1
Q ss_pred eeeeeeccccccCCCCccCCCCCCCCCCCeeEEEEeeccCCCCCCeEEEEeCCCCEEEEEEEeCCCccE-EEEce-eccC
Q 044070 348 NVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHK-VHLSE-CLYK 425 (903)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~i~~~~~~~~~~~~~~~~LL~~e~G~l~~l~l~~~~~~~~-v~~~~-~~~~ 425 (903)
+.+..|.+.+ ..++ .+| .+++.++.+|||+|++|+||++.+.+.++.+. +.+.. .++.
T Consensus 246 -~~ai~p~~~~----------------~~t~-~~~--~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge 305 (1096)
T KOG1897|consen 246 -FVAIAPLTAE----------------QSTI-VCY--GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGE 305 (1096)
T ss_pred -eeEecccccC----------------CceE-EEc--ccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCC
Confidence 1112222111 1333 334 45666788999999999999999997766321 12333 3567
Q ss_pred CCCcceEEEECCCeEEEEEeeCCeEEEEEeC-----CceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEE
Q 044070 426 GPPCKALLWVEGRFLSAFVEMGDGMVLKEEN-----GRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLR 500 (903)
Q Consensus 426 ~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~-----~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~ 500 (903)
+++|+||+||++|+||+||++|||+|+++.. ....++++++|+|||.||++.|...++++||++|||++++|+||
T Consensus 306 ~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLR 385 (1096)
T KOG1897|consen 306 TSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLR 385 (1096)
T ss_pred cchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEE
Confidence 9999999999999999999999999999973 24677899999999999999999988999999999999999999
Q ss_pred EEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEeCCccccccCcCCccCCCCeEEEEeeCCC
Q 044070 501 IIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADG 580 (903)
Q Consensus 501 ~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~~~~ 580 (903)
++|+||++++++.++ ++|++++|+++..-.+++|.||++||.++|++|.+++++||..+. ||.++++||+|+.+.++
T Consensus 386 iiRngi~I~e~A~i~--l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~-gf~~~~~Tif~S~i~g~ 462 (1096)
T KOG1897|consen 386 IIRNGIGIDELASID--LPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDP-GFSTDEQTIFCSTINGN 462 (1096)
T ss_pred EEecccccceeeEee--cCCccceeEeeccccccCCcEEEEEeccceEEEEEccceEEeccc-cccccCceEEEEccCCc
Confidence 999999999999997 899999999997766788999999999999999999999998877 99999999999999888
Q ss_pred eEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEe
Q 044070 581 LLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEM 659 (903)
Q Consensus 581 ~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~ 659 (903)
.++|||+++||+++.+. +..+|.+ .+..|..|+++..||+||..++.++|++.. .+ .|.|+
T Consensus 463 ~lvQvTs~~iRl~ss~~------------~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~----~~--~l~e~ 524 (1096)
T KOG1897|consen 463 QLVQVTSNSIRLVSSAG------------LRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIE----DG--GLREV 524 (1096)
T ss_pred eEEEEecccEEEEcchh------------hhhcccCCCceEEEEEeecceEEEEecCccEEEEEEee----cc--ceeee
Confidence 89999999999998763 3689998 778899999999999999887877777554 22 48889
Q ss_pred eeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCe-EEEEEccCCCCeeEEEeeeeee
Q 044070 660 QHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPS-VEVLSFVPKEGLRVLASGSIVL 738 (903)
Q Consensus 660 ~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~-v~i~sl~~~~~l~~~s~~~l~~ 738 (903)
.+..+++||+||++.+.++++.| +.+++||.|+.. +.+..+|+.. +...+
T Consensus 525 ~~~~~e~evaCLDisp~~d~~~~----------------------s~~~aVG~Ws~~~~~l~~~pd~~-~~~~~------ 575 (1096)
T KOG1897|consen 525 SHKEFEYEVACLDISPLGDAPNK----------------------SRLLAVGLWSDISMILTFLPDLI-LITHE------ 575 (1096)
T ss_pred eeheecceeEEEecccCCCCCCc----------------------ceEEEEEeecceEEEEEECCCcc-eeeee------
Confidence 99999999999999987665444 789999999664 4444555433 22111
Q ss_pred cccCCCCCCCCCcceeEEeec-C-ccEEEEEecCCcEEEEEecCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 044070 739 TNTMGTAISGCIPQDVRLVLA-D-QFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFE 816 (903)
Q Consensus 739 ~~~~~~~~s~~~p~si~l~~~-~-~~~L~vgl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (903)
.++.+ .+|+||++..+ + ..||+|+++||.+++|.++..+|
T Consensus 576 --~l~~~---~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg--------------------------------- 617 (1096)
T KOG1897|consen 576 --QLSGE---IIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTG--------------------------------- 617 (1096)
T ss_pred --ccCCC---ccchheeeEEeeccceEEEEEcCCceEEEEEEEcccc---------------------------------
Confidence 12222 68999999988 3 79999999999999999998776
Q ss_pred cCCCCCccccccceeeecceeeEEEEEEeCCCceEEEecCCCeEEEEeCCceEEEEeeecCCcccCCCCCCCCCCeEEEE
Q 044070 817 SKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFV 896 (903)
Q Consensus 817 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~li~~~~~~l~~~~l~~~~~~~~~~f~s~~~~~g~~~~ 896 (903)
++++.+.+.||++|+.|+.|+..+.++|||+|||||++|..++++.|+|+++..+.++|||++++||++++++
T Consensus 618 -------~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~ 690 (1096)
T KOG1897|consen 618 -------QLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASA 690 (1096)
T ss_pred -------eEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEe
Confidence 3456677799999999999999899999999999999999999999999999999999999999999999999
Q ss_pred ecCeeeC
Q 044070 897 AENSLNL 903 (903)
Q Consensus 897 ~~~~l~~ 903 (903)
+++.|+|
T Consensus 691 ~~~~l~i 697 (1096)
T KOG1897|consen 691 NGGALTI 697 (1096)
T ss_pred cCCceEE
Confidence 9999975
No 2
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=100.00 E-value=3.6e-106 Score=925.21 Aligned_cols=700 Identities=29% Similarity=0.469 Sum_probs=630.2
Q ss_pred eEEEEEEEecCCceeEEEEEEecCCCcCeEEEEcCCEEEEEEecCC-CcEEEEEEEEeccceeEeeeeeccccccccCCC
Q 044070 30 IHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGED-GIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQ 108 (903)
Q Consensus 30 ~~~~~~tl~~pt~V~~sl~g~f~~~~~~~LVv~k~~~LeIy~~~~~-g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~ 108 (903)
|+||++|+++++.|.+++.|+|.+++.+++|+++++.|++|+++++ |+++.++++.+||+|+++++||+ +
T Consensus 1 m~lysltlq~~t~i~~~~~g~fs~~k~qeIv~~~~s~l~L~~~d~~~G~l~~i~~~~vFg~Irsla~~~l---------t 71 (1205)
T KOG1898|consen 1 MFLYSLTLQNQTGIVQAIYGNFSGPKAQEIVLGRGSILELYRIDENDGRLKTICRQEVFGTIRSLAAFRL---------T 71 (1205)
T ss_pred CchhhhhhhcccceeeeehhhccCCchheEEEEeeeEEEEEEecCCCceEEEEEEEeehhhhhhhhcccc---------C
Confidence 7999999999999999999999999999999999999999999976 99999999999999999999987 6
Q ss_pred CCCccEEEEEeCCCcEEEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeecCCCCc
Q 044070 109 VMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSD 188 (903)
Q Consensus 109 ~~~~D~Llv~tds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~~~~~~ 188 (903)
+..+|+|+|++|+|+++||+|..+++.|++++|++++|+|+||..||+|+++||+|||+++++.|+++.||.++++..++
T Consensus 72 ~~~kD~LaV~SDSGri~il~y~~ek~~~~~~~qetfGks~~rrivpG~y~~idp~Gra~misave~~kLvyvlnrD~~a~ 151 (1205)
T KOG1898|consen 72 GGTKDYLAVGSDSGRISILEYNNEKNHFEKLHQETFGKSGCRRIVPGQYLAIDPKGRAVMISAVEKQKLVYVLNRDGAAR 151 (1205)
T ss_pred CCCccEEEEEcCCceEEEEEechhhhccccccccccCcccceEeccccEEEEcCCccceeeehhhcCcEEEEEccchhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cccccccCCCCccccCcccceeeeccccccEEEEEEeeCCCCCCCCCCCcEEEEEEeecC------------CccceEEE
Q 044070 189 IIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRG------------ALLNELLL 256 (903)
Q Consensus 189 ~~~~~~~sP~~~e~~~s~~~~~~~~~~~~~i~dm~FL~~~~~~~~~~~~PtlavL~~~~~------------~~~~~l~~ 256 (903)
.++++|+| +++.+..+++|+.+++ ||.||+||.|+.+.+ .+.+++++
T Consensus 152 ---ltisSple------------ahk~~sic~~l~~Vd~------gf~np~fa~LE~dy~~a~~d~tgeaa~~~~~~l~f 210 (1205)
T KOG1898|consen 152 ---LTISSPLE------------AHKAHSICLDLVGVDV------GFENPIFAALERDYSEADNDPTGEAATMTQKVLTF 210 (1205)
T ss_pred ---ceecCchh------------hccCCcEEEEEEEEec------cCCCceEEEEeechhhcccCchhhhhhccccceeE
Confidence 58999998 7899999999999999 799999999999732 13589999
Q ss_pred EEEEccCCceeeeeeeecC-CCCcceEEeecCC---CCceEEEeeCcEEEEecCCCCCCeeeeeccccCCCCccccccee
Q 044070 257 VGWNIREHAISVLSCFFEA-GPLAHCVVEVPRS---YGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFV 332 (903)
Q Consensus 257 y~ldl~~~~~~vi~~~~~~-~~~~~~li~vP~~---~ggvlv~~~~~il~i~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 332 (903)
|++|++.+ |++++|+++ .+.++++++||.+ +.|++|+.+|++.|.++..+.-..+.++++.|
T Consensus 211 Yeldlgln--hvvrk~s~p~~~~~n~l~~VP~G~D~ps~v~vc~~n~~~y~~~~d~p~~ri~~~rr~~------------ 276 (1205)
T KOG1898|consen 211 YELDLGLN--HVVRKASEPVNHFGNFLLTVPGGSDGPSGVLVCAENYLLYRNLGDHPDVRIPIERRIN------------ 276 (1205)
T ss_pred EEEecccc--eeEEEcccccCCCceEEEEecCCCCCCcceEEecCceeeccccccCCCEEeccccccc------------
Confidence 99999998 999999987 4678999999987 44899999999999888755433322222211
Q ss_pred ccccccccCCCcccceeeeeeccccccCCCCccCCCCCCCCCCCeeEEEEeeccCCCCCCeEEEEeCCCCEEEEEEEeCC
Q 044070 333 DESCRVHDVDDEGLFNVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGS 412 (903)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~i~~~~~~~~~~~~~~~~LL~~e~G~l~~l~l~~~~ 412 (903)
++++ ...+..++++|.+ ..++..++++++++||+|++++++|+
T Consensus 277 ---------------------------------~L~~--~~~~vliv~s~~h--k~k~~ff~llqt~~GD~fk~tl~~d~ 319 (1205)
T KOG1898|consen 277 ---------------------------------ELSD--AEDGVLIVSSAEH--KTKSMFFFLLQTEYGDLFKLTLEHDG 319 (1205)
T ss_pred ---------------------------------cCCc--cccccEEEEeecc--cccCCeEEEEEecCCceEEEEEecCC
Confidence 0110 0234566777754 34558999999999999999999998
Q ss_pred CccEEEEceeccC-CCCcceEEEECCCeEEEEEeeCCeEEEEEeC---------------------------CceEEeee
Q 044070 413 DGHKVHLSECLYK-GPPCKALLWVEGRFLSAFVEMGDGMVLKEEN---------------------------GRLVYTSP 464 (903)
Q Consensus 413 ~~~~v~~~~~~~~-~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~---------------------------~~~~~~~~ 464 (903)
+ +++.+..+||+ +|.+..|+++++|+||+++++||++|||+.. +++..++.
T Consensus 320 d-~v~el~lkYfDtvp~a~~L~I~k~GfLf~~sE~~n~~lyq~~~LG~~~~~~s~~~~~~~~~~~~f~p~~l~nL~~~~~ 398 (1205)
T KOG1898|consen 320 D-NVVELRLKYFDTVPCALQLCILKTGFLFVASEFGNHRLYQFEKLGEEDDDFSNAMTSEEGKSVFFEPRILKNLSPVSS 398 (1205)
T ss_pred C-cceeeeeehhcCCccceEEEEeccceEEEhhhccCcceeehhhcCCCccchhhhcccccCcceeccccccccccchhh
Confidence 8 44557767887 5888999999999999999999999999972 15677899
Q ss_pred ecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEec
Q 044070 465 IQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFV 544 (903)
Q Consensus 465 l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~ 544 (903)
++|+.|++|+.+++..+++.+||++|||+|++++|++||+|+...++..++ ++++++++||++...++.+|.||++||.
T Consensus 399 i~sl~p~~d~~I~~~~ne~~~qi~~~cg~~~~sslr~lR~gle~sel~~t~-lp~~~ta~WTvk~~~td~ydsyivvsF~ 477 (1205)
T KOG1898|consen 399 VESLSPLLDISIGDDSNEDTPQIYSACGRGPRSSLRILRNGLEVSELLVTE-LPGNPTATWTVKKNITDVYDSYIVVSFV 477 (1205)
T ss_pred hhccCccceeEeeccCcccchhhhhhhCcCccccchhhccccchHHHhhhc-cCCCCceEEEEcCccccccceEEEEEee
Confidence 999999999999998888899999999999999999999999999999885 7899999999999888999999999999
Q ss_pred CceEEEEeCCccccccCcCCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEE
Q 044070 545 EETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISL 623 (903)
Q Consensus 545 ~~T~vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~ 623 (903)
+.|+||++++.+||++++ ||..+.+||+|+.|+++.+|||++++||++..+++ +.+|.+ ++.+|+.
T Consensus 478 n~TlVLsIgesveEvtds-gFls~~~Tl~~~l~Gd~slVQi~~d~iRhi~~~~r------------~~ew~~P~~~~Iv~ 544 (1205)
T KOG1898|consen 478 NGTLVLSIGESVEEVTDS-GFLSTTPTLACSLMGDDSLVQIHPDGIRHIRPTKR------------INEWKTPERVRIVK 544 (1205)
T ss_pred ccEEEEEcchhHHHhhhc-ccccCCceEEEEEecCCcEEEEchhhhhhcccccc------------cccccCCCceEEEE
Confidence 999999999999999987 99999999999999999999999999999987754 679996 8899999
Q ss_pred EEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEe-eeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCcc
Q 044070 624 GAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEM-QHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGV 702 (903)
Q Consensus 624 As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~-~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 702 (903)
|+++..||+||++||+++||+++ .+| ++.|. ++.+++.+|+|+++.+.+.|..+
T Consensus 545 ~avnr~qiVvalSngelvyfe~d---~sg--ql~E~~er~tl~~~vac~ai~~~~~g~kr-------------------- 599 (1205)
T KOG1898|consen 545 CAVNRRQIVVALSNGELVYFEGD---VSG--QLNEFTERVTLSTDVACLAIGQDPEGEKR-------------------- 599 (1205)
T ss_pred EeecceEEEEEccCCeEEEEEec---cCc--cceeeeeeeeeceeehhhccCCCCcchhh--------------------
Confidence 99999999999999999999887 344 68885 88999999999999998777665
Q ss_pred ccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec----C----ccEEEEEecCCcEE
Q 044070 703 IIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA----D----QFYVLAGLRNGMLL 774 (903)
Q Consensus 703 ~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~----~----~~~L~vgl~~G~l~ 774 (903)
+.|+++|+.|+++++++|++..+|..++.|.++ ..|.+++++.+ + +.||++||+||.|+
T Consensus 600 --srfla~a~~d~~vriisL~p~d~l~~ls~q~l~-----------~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvll 666 (1205)
T KOG1898|consen 600 --SRFLALASVDNMVRIISLDPSDCLQPLSVQGLS-----------SPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLL 666 (1205)
T ss_pred --cceeeeeccccceeEEEecCcceEEEccccccC-----------CCccceEEEEecccCCccceeEEEEecccccEEE
Confidence 789999999999999999998889999888875 25788888887 2 79999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCccccccceeeecceeeEEEEEEeCCCceEEEe
Q 044070 775 RFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIAL 854 (903)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~ 854 (903)
|+.+|..+| ++.++++|+||.+||+|.|+...+.+.++++
T Consensus 667 R~~id~v~G----------------------------------------~l~d~rtR~lG~~pvkLf~~~~~~~s~vL~l 706 (1205)
T KOG1898|consen 667 RFVIDTVTG----------------------------------------QLLDIRTRFLGLRPVKLFPISMRGQSDVLAL 706 (1205)
T ss_pred EEEeccccc----------------------------------------ceeeeheeeeccccceEEEEeecCcceeEEe
Confidence 999999887 5668999999999999999999999999999
Q ss_pred cCCCeEEEEeCCceEEEEeeecCCcccCCCCCCCCCCeEEEEecCeeeC
Q 044070 855 SDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL 903 (903)
Q Consensus 855 ~~~p~li~~~~~~l~~~~l~~~~~~~~~~f~s~~~~~g~~~~~~~~l~~ 903 (903)
++|||+.|+.++.+.++|++++.++++++|++++||+|+++++.|.|+|
T Consensus 707 Ssr~wl~y~~~~~~h~t~Isy~~l~~as~~~S~qcpeGiv~i~~n~l~i 755 (1205)
T KOG1898|consen 707 SSRPWLLYTYQQEFHLTPISYSTLEHASPFCSEQCPEGIVAISKNTLRI 755 (1205)
T ss_pred cCChhhhhhhcceeeeecccccchhccccccccCCCcchhhhhhhhhhe
Confidence 9999999999999999999999999999999999999999999999876
No 3
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=3.1e-74 Score=669.16 Aligned_cols=771 Identities=16% Similarity=0.200 Sum_probs=557.5
Q ss_pred eEEEEEEEecCCceeEEEEEEecCCCcCeEEEEcCCEEEEEEecC-----------CC------cEEEEEEEEeccceeE
Q 044070 30 IHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGE-----------DG------IVQSVCEQAVFGTIKD 92 (903)
Q Consensus 30 ~~~~~~tl~~pt~V~~sl~g~f~~~~~~~LVv~k~~~LeIy~~~~-----------~g------~L~~v~~~~lfg~I~~ 92 (903)
|...++..++||+|.+|+.|+|+.....||||++.|.|++|++.. ++ +|++++++.+||.|++
T Consensus 1 m~~vykq~h~~T~ve~s~ag~Ft~~~~~nlvV~~~N~L~vyri~~~~e~~t~~~~~~~~~~~~~~LeLv~~~~l~GnV~s 80 (1366)
T KOG1896|consen 1 MFAVYKQEHDPTVVENSSAGLFTNNRTENLVVAGTNILRVYRISRDAEALTKNDPGDMGKAHRKKLELVAEFKLFGNVTS 80 (1366)
T ss_pred CcchhhhccCchhhccceeeeEecCCCcceEEecccEEEEEEeccchhhccccCccccccccceEEEEEEEEEeecceee
Confidence 566788899999999999999999999999999999999999975 11 4999999999999999
Q ss_pred eeeeeccccccccCCCCCCccEEEEEeCCCcEEEEEEeCCCcceEeeEEEEecCCCccc----ccCCcEEEECCCCCeeE
Q 044070 93 LAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSR----HQLGRMLAVDSSGCLIA 168 (903)
Q Consensus 93 i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~----~~~g~~l~VDP~~R~ia 168 (903)
|++++. .+.++|.|+++|+++|+++|+||++++.|.|++.|.|+.+-.+. ...++.++|||++||++
T Consensus 81 i~~~~~---------~gs~rD~LlL~f~~AKiSvlefD~~t~sl~TlSLHyfE~~~~~~~~~~~~~~p~vrvDPdsrCa~ 151 (1366)
T KOG1896|consen 81 IAKLPL---------KGSNRDALLLLFKDAKISVLEFDPQTNSLRTLSLHYFEGPEFRKGLVGRAKIPTVRVDPDSRCAL 151 (1366)
T ss_pred EEEeec---------CCCCcceEEEEeccceEEEEEecCCccceeeeeeEEeccccccccccccccCceEEECCCCCeEE
Confidence 999986 77889999999999999999999999999999999999775543 33456799999999999
Q ss_pred EeeccccEEEEEeecCCCCcc-----ccccccCCCCccccCcccceee-eccccccEEEEEEeeCCCCCCCCCCCcEEEE
Q 044070 169 VSAYEDRLGLFSLSMSSGSDI-----IDKKICYPSESEVDTSASRIAQ-KNSISGTIWSMCFISTDPRQPSKEHNPILAI 242 (903)
Q Consensus 169 l~~~e~~l~v~pl~~~~~~~~-----~~~~~~sP~~~e~~~s~~~~~~-~~~~~~~i~dm~FL~~~~~~~~~~~~Ptlav 242 (903)
+..|...++++|+.+++.-+. ...+++++.. +|+...++ ++....+|+|++|||+ |++||+|+
T Consensus 152 llvyg~~m~iLpf~~~e~~~~~~~~~~~~~~ss~~~----pSyvi~~reLdeki~niiD~qFLhg-------Y~ePTl~I 220 (1366)
T KOG1896|consen 152 LLVYGLRMAILPFRVNEHLDDEELFPSGFSKSSFTA----PSYVIALRELDEKIKNIIDFQFLHG-------YYEPTLAI 220 (1366)
T ss_pred EEEecceEEEeecccccccccccccccccccccccc----ceeEEEhhhhhhhhccceeEEeecC-------cccceEEE
Confidence 999999999999977431110 0112233332 44444432 2445678999999999 99999999
Q ss_pred EEeec-CC--------ccceEEEEEEEccCCceeeeeeeecCCCCcceEEeecCCCCceEEEeeCcEEEEecCCCCCCee
Q 044070 243 ILNRR-GA--------LLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSC 313 (903)
Q Consensus 243 L~~~~-~~--------~~~~l~~y~ldl~~~~~~vi~~~~~~~~~~~~li~vP~~~ggvlv~~~~~il~i~~~~~~~~~~ 313 (903)
||++. +| ++..++.+++|++++..++|+....+|.+++...++|.|.||+||++.|.++|+++++.+..++
T Consensus 221 Lyep~~tw~grv~~r~dt~~~vaisLni~q~~hpVI~sv~sLP~D~~~~~~vp~piGgvLv~~~n~~iy~nqsv~~~gv~ 300 (1366)
T KOG1896|consen 221 LYEPEQTWAGRVILRKDTCVLVAISLNITQKVHPVIWSVLSLPFDCYQATAVPTPIGGVLVFTVNNLIYLNQSVSPYGVA 300 (1366)
T ss_pred EecccccccceEEEecCcEEEEEEEcCccccccceEeeeccCChhhhhceeecccCccEEEEeeeeEEEEccCCCceeEE
Confidence 99984 33 3457788899999998899988887777899999999999999999999999999987654433
Q ss_pred eeeccccCCCCcccccceeccccccccCCCcccceeeeeeccccccCCCCccCCCCCCCCCCCeeEEEE-eeccCCCCCC
Q 044070 314 VYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSW-SWEPETDKIP 392 (903)
Q Consensus 314 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~i~~~~-~~~~~~~~~~ 392 (903)
+| .+.+ .+..+|..++....+++| |+- .|++ .+
T Consensus 301 -----LN----s~a~----------------------~~t~fpl~~qs~v~i~ld-----------~a~~t~i~----~d 334 (1366)
T KOG1896|consen 301 -----LN----SYAS----------------------KYTAFPLIPQSGVRIELD-----------CANATWIS----ND 334 (1366)
T ss_pred -----ec----chhh----------------------cccCCccccccceEEEEe-----------eccceeec----CC
Confidence 34 2222 133345554444444432 221 2433 57
Q ss_pred eEEEEeCCCCEEEEEEEeC-CCccEEEEceeccC-CCCcceEEEECCCeEEEEEeeCCeEEEEEeC--------------
Q 044070 393 KMVFCVDTGEFFMIEIAFG-SDGHKVHLSECLYK-GPPCKALLWVEGRFLSAFVEMGDGMVLKEEN-------------- 456 (903)
Q Consensus 393 ~~LL~~e~G~l~~l~l~~~-~~~~~v~~~~~~~~-~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~-------------- 456 (903)
..+++..+|++|+|++..| ++.++- +...-+. ...+++++-..|++||+||+.|||.|++|.+
T Consensus 335 k~vis~~~Gd~y~Ltl~~D~~r~V~~-~~f~k~~asvl~t~~v~~~n~llFlGSrlgnSlll~~s~~~~~~~e~~~re~~ 413 (1366)
T KOG1896|consen 335 KCVISLKNGDLYLLTLILDIGRSVQL-LHFDKFKASVLATSIVGHGNNLLFLGSRLGNSLLLRFSELLQRASEGVRREEG 413 (1366)
T ss_pred eEEEecCCCcEEEEEEEeccccchhh-hhhhhhhcccceeeeeccCCccEEEEecCCCEEEEEehhccccCCcccccccc
Confidence 7999999999999999998 443321 2111222 3457888889999999999999999999972
Q ss_pred C-----------------------------------------------ceEEeeeecccccccceEEeecCC--------
Q 044070 457 G-----------------------------------------------RLVYTSPIQNIAPILDMSVVDYHD-------- 481 (903)
Q Consensus 457 ~-----------------------------------------------~~~~~~~l~N~gPI~D~~v~~~~~-------- 481 (903)
+ .++++|+++|+|||.||++++..+
T Consensus 414 d~~~~~~~~~~~d~~~d~~~~d~~~~~~~~~g~~~~~g~~a~~t~~~f~fevcDsL~NIGPi~~~avG~~~~~~~~~~gl 493 (1366)
T KOG1896|consen 414 DTESDGYSKKRVDDTQDVRRDDEKSAELFEAGSEENYGSGAQETVQPFSFEVCDSLPNIGPITDFAVGKRSSASEAVEGL 493 (1366)
T ss_pred CCcCCcchhhcccchhhhhhhhhhccchhhccccccCCcccceeeeeeEEeehhccccccccccceeccccchhhhccCC
Confidence 0 268899999999999999986432
Q ss_pred --CCC-CeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCC-----CCcceEEEEEecCceEEEEeC
Q 044070 482 --EKR-DQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVS-----DPYHSFLVLSFVEETRVLRVG 553 (903)
Q Consensus 482 --~~~-~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~-----~~~~~~LvlS~~~~T~vl~~~ 553 (903)
+.. -++|+|+|+|++|+|+++|+.|.+++..+++ ++|+.++|++..... +..|.||++|..++|+||+.+
T Consensus 494 ~~~~~~~elV~~sGhgkngaL~V~r~sI~P~i~t~fe--l~Gc~~iWtV~~~~~~~~~~~~~h~~lilS~e~~t~il~tg 571 (1366)
T KOG1896|consen 494 SPHNKCLELVATSGHGKNGALSVIRRSIRPEIATEFE--LPGCVDIWTVFIKGRKREEDNTQHLYLILSTESRTMILETG 571 (1366)
T ss_pred CCCCCeEEEEEeccCCCCcceEEEeecccceeeEEEE--ecCeeeEEEEEEeccccccccCcceEEEeecccchhhhhcc
Confidence 112 4799999999999999999999999999986 999999999987532 345899999999999999999
Q ss_pred CccccccCcCCccCCCCeEEEEeeCCC-eEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEEecCCEE
Q 044070 554 LNFTDVTDSVGFRPDVCTLACGLVADG-LLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAVAHNMI 631 (903)
Q Consensus 554 ~~~~e~~~~~~f~~~~~Tl~a~~~~~~-~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~~~~~v 631 (903)
+++.|++.+ +|..+.+||++|+++++ ++|||||+++|+++.+.+ ..+...- .+..++++++.|++|
T Consensus 572 e~~~Ev~~s-~f~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~r-----------~lq~i~fd~~~~vv~~sv~dpyv 639 (1366)
T KOG1896|consen 572 EELLEVSGS-GFTRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDLR-----------MLQRIPFDSGAIVVQTSVADPYV 639 (1366)
T ss_pred chhhhcccc-eeEeccceEEEEecCCceEEEEEccceeEEecCcch-----------heeEeccccCCcEEEEeccCceE
Confidence 999999997 89999999999999875 799999999999998765 2444433 566789999999999
Q ss_pred EEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCC-C-----CCcc------ccCCCCCC---
Q 044070 632 IVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKS-S-----SPIS------LVSNSSVP--- 696 (903)
Q Consensus 632 vva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~-~-----~~~~------~~~~~~~~--- 696 (903)
++...+|.+..|...+ + +.+|.. ...+...+.++++.+.-.|.... + ...+ .++-.+.+
T Consensus 640 ~v~~~~g~i~~~~l~~---~-s~rl~~--~~~~s~~~~sv~~~~dlsg~f~~~s~l~~k~~~~~gr~~~~~~~~~~~~kv 713 (1366)
T KOG1896|consen 640 AVRSSEGRITLYDLEE---K-SHRLAL--HDPMSFKVVSVSLPADLSGMFTTLSDLSLKGNEANGRSSEAEGLQSLPCKV 713 (1366)
T ss_pred EEEEcCCceEEEEecc---c-cchhhc--cCcccceeEEEechhhhccceEEEeeecccCcccccccccccccccCCccc
Confidence 9999999988875542 1 123322 22255666666655543332211 0 0000 00000100
Q ss_pred -CCC---CccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeee--------eccc--CCCCCCCCCcceeEEeec---
Q 044070 697 -ALP---AGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIV--------LTNT--MGTAISGCIPQDVRLVLA--- 759 (903)
Q Consensus 697 -~~~---~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~--------~~~~--~~~~~s~~~p~si~l~~~--- 759 (903)
..+ .+..+ .|+++.+.+|++.||++++++.+..+...... .... .+...+..+ ..+.+..+
T Consensus 714 ~~~egg~~~~~~-~~~~~~~e~g~leiy~~pd~~lVf~v~~f~~~~~~L~~~~~~~~~~~~~s~~~~l-~q~~~~~L~~e 791 (1366)
T KOG1896|consen 714 DDEEGGSPEQEP-YWCVFVTESGTLEIYALPDFDLVFEVDMFDTGNRVLMDSRLRGPTTNKESEDLEL-KQLFVNPLGSE 791 (1366)
T ss_pred cCCCCCCcccCc-eEEEEEcCCCceEEEccCCcceEEEeeccCCCcceEEeecccCccccccccchHH-HHhhccccchh
Confidence 000 01112 79999999999999999998875444332110 0000 000001011 12223333
Q ss_pred ---CccEEEEEecCCcEEEEEecC--CCCCCCCCCCCCCCccccccccccc-ccccccccccccCCCCCccccccceeee
Q 044070 760 ---DQFYVLAGLRNGMLLRFEWPP--DSNIPSSVAPIHSPISATFRNTENI-RSGIAATSSFESKDELPINLQLIATRRI 833 (903)
Q Consensus 760 ---~~~~L~vgl~~G~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l 833 (903)
..++|++-+.+|.++.|+.=+ ..|. .+..|++..+- -....+...--++.+.. . .......
T Consensus 792 ~~~~e~~L~lv~~~~eil~Ykaf~~~~~~~----------~~~~f~kvp~~~~~~~~~p~~~~~~~~~~-~--~e~~~~~ 858 (1366)
T KOG1896|consen 792 IVFKEPHLFLVVSDNEILIYKAFPQLSQGN----------LKVFFKKVPHNLNIRTDKPHFLCKKREGG-G--AEEGASV 858 (1366)
T ss_pred hhccCCceEEEEeCceEEEEeeccccCccc----------hhhhhhhCCHhhcccccCCcccchhhccc-c--ccccccc
Confidence 368999999999999999654 2221 12334443331 00000000000010000 0 0000123
Q ss_pred cceeeEEEEEE-eCCCceEEEecCCC-eEEEEeCCceEEEEeeec-CCcccCCCCCCCCCCeEEEEec-Ceee
Q 044070 834 GITPVFLVPLS-DSLDADMIALSDRP-WLLQTARHSLAYTSISFQ-PSTHATPVCSVECPKGILFVAE-NSLN 902 (903)
Q Consensus 834 G~~pv~l~~~~-~~~~~~v~~~~~~p-~li~~~~~~l~~~~l~~~-~~~~~~~f~s~~~~~g~~~~~~-~~l~ 902 (903)
+..-.++++|+ ++|++++|++|.+| |++.+-+|.++++|+..+ ++.++++|++..||+||+|++. +.|+
T Consensus 859 ~~~~~~m~~f~~i~ghsgvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfiyvd~~~~l~ 931 (1366)
T KOG1896|consen 859 SVIVQRMTYFEDIGGHSGVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFIYVDRQGELV 931 (1366)
T ss_pred cceeeeEEeeccccCeeEEEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceEEECCCceEE
Confidence 44456889997 78999999999999 666678999999999987 6899999999999999999965 4444
No 4
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=100.00 E-value=1.9e-63 Score=586.25 Aligned_cols=470 Identities=29% Similarity=0.432 Sum_probs=322.8
Q ss_pred cEEEEEeCCCcEEEEEEeCCCcceEe--eE-EEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeecCCCCcc
Q 044070 113 DLLVVISDSGKLSFLAFCNEMHRFFP--VA-QVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDI 189 (903)
Q Consensus 113 D~Llv~tds~~l~iL~~d~~~~~f~t--v~-~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~~~~~~~ 189 (903)
|+|+|+||+|++++|+|+++++++.+ ++ .+++.+++.++..+|++++|||+|||+|+++|++.|.|||+++....+.
T Consensus 1 D~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~ 80 (504)
T PF10433_consen 1 DSLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDI 80 (504)
T ss_dssp -EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-
T ss_pred CEEEEEECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEecccccccc
Confidence 89999999999999999998888643 33 4899999999999999999999999999999999999999988211110
Q ss_pred -ccccccCCCCccccCcccceeeeccccccEEEEEEeeCCCCCCCCCCCcEEEEEEeecCCccceEEEEEEEccCCceee
Q 044070 190 -IDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISV 268 (903)
Q Consensus 190 -~~~~~~sP~~~e~~~s~~~~~~~~~~~~~i~dm~FL~~~~~~~~~~~~PtlavL~~~~~~~~~~l~~y~ldl~~~~~~v 268 (903)
....+.+|+ +++++|+||+||++ +.++++|+||+||++. ....++.+|+|+..+...++
T Consensus 81 ~~~~~~~~pi---------------~s~~~i~~~~FL~~----~~~~~~p~la~L~~~~-~~~~~~~~y~w~~~~~l~~~ 140 (504)
T PF10433_consen 81 AFSPHINSPI---------------KSEGNILDMCFLHP----SVGYDNPTLAILYVDS-QRRTHLVTYEWSLDDGLNHV 140 (504)
T ss_dssp TT---EEEE-----------------S-SEEEEEEEES-------S-SS-EEEEEEEET-T-EEEEEEEE--------EE
T ss_pred cccccccccc---------------cCCceEEEEEEEec----ccCCCCceEEEEEEEe-cccceeEEEeeeccccccee
Confidence 001111222 34899999999992 1259999999999983 35689999999999887676
Q ss_pred eeeeecC------CCCcceEEeecCCCCceEEEeeCcEEEEecCCCCCCeeeeeccccCCCCcccccceeccccccccCC
Q 044070 269 LSCFFEA------GPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVD 342 (903)
Q Consensus 269 i~~~~~~------~~~~~~li~vP~~~ggvlv~~~~~il~i~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 342 (903)
++++... ...+.+|||||++.||+||++++.++|.+........
T Consensus 141 ~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~~~i~y~~~~~~~~~~------------------------------ 190 (504)
T PF10433_consen 141 ISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGENIIIYKNHLIGSGDY------------------------------ 190 (504)
T ss_dssp TTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEESSEEEEEE------TT------------------------------
T ss_pred eeeccccccccccCCCccEEEEcCCCCcEEEEECCEEEEEeccccccccc------------------------------
Confidence 6554432 1235999999999999999999999887542110000
Q ss_pred CcccceeeeeeccccccCCCCccCCCCCCCCCCCeeEEEEeecc----CCCCCCeEEEEeCCCCEEEEEEEeCCCccEEE
Q 044070 343 DEGLFNVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEP----ETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVH 418 (903)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~i~~~~~~~~----~~~~~~~~LL~~e~G~l~~l~l~~~~~~~~v~ 418 (903)
. ..+++.+. .....+|++|.+.. ...+.+++||++++|+||+|.+..+++.++++
T Consensus 191 -~-------~~~~~~~~-------------~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~ 249 (504)
T PF10433_consen 191 -S-------FLSIPSPP-------------SSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISIT 249 (504)
T ss_dssp -E-------EEEE--H--------------HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEE
T ss_pred -c-------cccccCCc-------------cCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEE
Confidence 0 00011000 00135688886521 23458999999999999999999886422232
Q ss_pred EceeccC-CCCcceEEEECCC--eEEEEEeeCCeEEEEEeCCceEEeeeecccccccceEEeecCCCCCC------eEEE
Q 044070 419 LSECLYK-GPPCKALLWVEGR--FLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRD------QMFA 489 (903)
Q Consensus 419 ~~~~~~~-~~~~ssl~~l~~~--~lFvgS~~gds~L~~~~~~~~~~~~~l~N~gPI~D~~v~~~~~~~~~------~lva 489 (903)
.++. ++++++++++++| +||+||++|||+|+++...+++++++++|||||+||++++...++++ +||+
T Consensus 250 ---~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~ 326 (504)
T PF10433_consen 250 ---YLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVA 326 (504)
T ss_dssp ---EEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----SEEEEEEE-TSSSSS-------EEEE
T ss_pred ---EcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCCccceEEeccccCCCCcccccceEEE
Confidence 2455 8899999999999 99999999999999999989999999999999999999987666555 9999
Q ss_pred EeeCCCCCcEEEEeccCcee--EEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEeC--C---ccccccCc
Q 044070 490 CCGVAPEGSLRIIRSGISLE--KLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVG--L---NFTDVTDS 562 (903)
Q Consensus 490 ~sG~g~~GsL~~lr~gi~~~--~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~~--~---~~~e~~~~ 562 (903)
|||.|++|+|+++|+|++++ ++...+ +++++++|+++...++ |.||++||+++|+||+++ + +++|+++.
T Consensus 327 ~sG~g~~gsL~~lr~Gi~~~~~~~~~~~--l~~v~~iW~l~~~~~~--~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~ 402 (504)
T PF10433_consen 327 CSGAGKRGSLRILRNGIGIEGLELASSE--LPGVTGIWTLKLSSSD--HSYLVLSFPNETRVLQISEGDDGEEVEEVEED 402 (504)
T ss_dssp EESSGGG-EEEEEEESBEEE--EEEEEE--ESTEEEEEEE-SSSSS--BSEEEEEESSEEEEEEES----SSEEEEE---
T ss_pred EECcCCCCcEEEEeccCCceeeeeeccC--CCCceEEEEeeecCCC--ceEEEEEcCCceEEEEEecccCCcchhhhhhc
Confidence 99999999999999999999 777764 7889999999976543 899999999999999996 2 45566445
Q ss_pred CCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEEecCCEEEEEEeCCcEE
Q 044070 563 VGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAVAHNMIIVSTSNPCFL 641 (903)
Q Consensus 563 ~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~~~~~vvva~~~~~il 641 (903)
+|.++++||+||+++++++||||+++||+++.... +...+|.| .+..|++|+++++||+|++++++++
T Consensus 403 -~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~----------~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~ 471 (504)
T PF10433_consen 403 -GFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDG----------KLTQEWKPPAGSIIVAASINDPQVLVALSGGELV 471 (504)
T ss_dssp -TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSST----------SEEEEEE-TTS---SEEEESSSEEEEEE-TTEEE
T ss_pred -cCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCC----------eEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEE
Confidence 99999999999999999999999999999975433 36789998 8889999999999999999999999
Q ss_pred EEEeEEeccccceEEEEe--eeccCCCceeEEEccC
Q 044070 642 FILGVRSLSVSHYEIYEM--QHMRLQSELSCISIPQ 675 (903)
Q Consensus 642 ~~~~~~~~~~g~~~L~~~--~~~~l~~eiscl~i~~ 675 (903)
||+.. .......+. ...+++.||+||++.+
T Consensus 472 ~~~~~----~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 472 YFELD----DNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEEE----TTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEE----CCceeeeeeccccccCCCceEEEEeCC
Confidence 99765 211111221 2234899999999865
No 5
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=100.00 E-value=6.4e-43 Score=393.61 Aligned_cols=544 Identities=15% Similarity=0.161 Sum_probs=407.5
Q ss_pred eEEEEEEEecCCceeEEEEEEecCCCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCC
Q 044070 30 IHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQV 109 (903)
Q Consensus 30 ~~~~~~tl~~pt~V~~sl~g~f~~~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~ 109 (903)
|..++..+...|++.||+.|+|++...++|++.++|.++||+...++.|.++-++..++.++++..++. ..
T Consensus 1 m~~~y~d~~d~tv~~~~~ag~Ft~s~~~~llv~~~Nil~v~~~~~d~~l~l~de~~~~e~~t~I~~~pq---------~~ 71 (1319)
T COG5161 1 MNYLYSDESDWTVTEGCSAGLFTPSRTCSLLVYNGNILAVRLWKYDSGLVLVDEHMLLEKVTQIEKYPQ---------IS 71 (1319)
T ss_pred CcchhhhhhHHHHhhccccceeeccccceEEEEeccEEEEEEeeccCCeeEchHHhhhhhhhhhhhccc---------cc
Confidence 445566778899999999999999999999999999999999999999999999999999999999853 45
Q ss_pred CCccEEEEEeCCCcEEEEEEeCCCcceEeeEEEEecCCCccc--c--cCCcEEEECCCCCeeEEeeccccEEEEEeecCC
Q 044070 110 MGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSR--H--QLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSS 185 (903)
Q Consensus 110 ~~~D~Llv~tds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~--~--~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~~~ 185 (903)
.+.|.|++.|..+++++|+|+...+.|-|++.+.|+..+... . ..-..+..||++.| |++.+|+....+|+..+.
T Consensus 72 se~~~lll~t~~akis~lrf~sq~n~f~TislhyyeGKfkgksLvelak~stle~D~~ssc-aLlfneDi~~flpfhvnk 150 (1319)
T COG5161 72 SEQDGLLLLTHRAKISLLRFDSQANEFRTISLHYYEGKFKGKSLVELAKFSTLEFDIRSSC-ALLFNEDIGNFLPFHVNK 150 (1319)
T ss_pred CccceEEEEeccceEEEEEehhhcccceeEEEeeeccccCCchhhhhhhhhheeeccCccc-hhhhhhhhhhcccccccC
Confidence 789999999999999999999999999999988887544321 1 12246899999966 566799999999996532
Q ss_pred CC-ccc----cccc---------cCCCCc------c-----c----cCccccee-eeccccccEEEEEEeeCCCCCCCCC
Q 044070 186 GS-DII----DKKI---------CYPSES------E-----V----DTSASRIA-QKNSISGTIWSMCFISTDPRQPSKE 235 (903)
Q Consensus 186 ~~-~~~----~~~~---------~sP~~~------e-----~----~~s~~~~~-~~~~~~~~i~dm~FL~~~~~~~~~~ 235 (903)
.. ++. |..+ ..|..- + + .+|+...+ +++-...+|+|++||++ |
T Consensus 151 ndddev~~d~D~~~~~~~~~h~~i~psqgtntfnkrkrt~~~~kfsaPs~Vl~~seld~~ikniiD~~FL~n-------y 223 (1319)
T COG5161 151 NDDDEVRIDVDLGMFQMSKRHFSIFPSQGTNTFNKRKRTLFPGKFSAPSKVLKFSELDGKIKNIIDFVFLEN-------Y 223 (1319)
T ss_pred CccccccccccccHHHHHHHHhhcCCCCCccccchhhhhhcCCcccCceeEEEehhhhccccccEEEEeecc-------C
Confidence 11 100 1000 012110 0 0 12333322 23556789999999999 9
Q ss_pred CCcEEEEEEeecC-C--------ccceEEEEEEEccCCceeeeeeeecCCCCcceEEeecCCCCceEEEeeCcEEEEecC
Q 044070 236 HNPILAIILNRRG-A--------LLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLR 306 (903)
Q Consensus 236 ~~PtlavL~~~~~-~--------~~~~l~~y~ldl~~~~~~vi~~~~~~~~~~~~li~vP~~~ggvlv~~~~~il~i~~~ 306 (903)
..||+|+||+++. | +....+++++|++..+.+||..+..+|.+.+..+++|. |.|++|.|+++|+|.+
T Consensus 224 ~~PTvallY~Pkl~~~~~~ti~k~p~~~~v~Tldl~~~~saVI~~~~~lP~d~~~~v~~p~---Gall~g~neli~idst 300 (1319)
T COG5161 224 SIPTVALLYDPKLSLPRKYTILKNPYNAIVFTLDLGAGRSAVIDEFLVLPRDFRVTVAGPV---GALLFGSNELILIDST 300 (1319)
T ss_pred CCceEEEEecccccccceeEeecCceeEEEEEEecCcchhhhhHhHhcCCceEEEEEeccc---ceEEEecccEEEEecC
Confidence 9999999999752 2 34567889999999988888777766656777777776 7899999999999998
Q ss_pred CCCCCeeeeeccccCCCCcccccceeccccccccCCCcccceeeeeeccc-cccCCCCccCCCCCCCCCCCeeEEEEeec
Q 044070 307 DPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLE-LRDYDPMCIDSDSGNAKEPSKHVCSWSWE 385 (903)
Q Consensus 307 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~e~~~~~~~~~i~~~~~~~ 385 (903)
|.+..+. +| .+..+ | ...+ +.|+...++..+ .+++ +.. |.
T Consensus 301 g~~~~I~-----lN----s~~~k------~----------------~~~~~v~d~s~~d~n~~----~~gt--tsI--wi 341 (1319)
T COG5161 301 GSSYTIP-----LN----SMSEK------Y----------------GGNKIVEDISLSDVNCF----SRGT--TSI--WI 341 (1319)
T ss_pred CcEEEee-----ch----hhHHH------h----------------cCCceEeecccceeeEe----ecCc--eee--ec
Confidence 7653322 23 33322 1 0111 111111001000 0111 122 23
Q ss_pred cCCC-CCCeEEEEeCCCCEEEEEEEeCCCcc------EEEEce-eccCCCCcceEEEECCCeEEEEEeeCCeEEEEEeC-
Q 044070 386 PETD-KIPKMVFCVDTGEFFMIEIAFGSDGH------KVHLSE-CLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEEN- 456 (903)
Q Consensus 386 ~~~~-~~~~~LL~~e~G~l~~l~l~~~~~~~------~v~~~~-~~~~~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~- 456 (903)
|-.+ +...++|.+-+|+.|+|.+..||+.+ ++.+.. -++..+.++|+..+++..+|+|+..+||.+++|.+
T Consensus 342 psSK~~~etl~l~dl~g~~yyl~~~~dgk~iigfdi~~L~~e~dllk~~s~~~Cv~~~n~~l~f~g~g~~ns~vlr~~~l 421 (1319)
T COG5161 342 PSSKCLIETLFLGDLNGDRYYLRISMDGKRIIGFDIASLEFEGDLLKKGSAVSCVGHVNNLLFFGGVGDSNSRVLRIKSL 421 (1319)
T ss_pred cCcccccceEEEEecCCCEEEEEEEeccceeeccceeeeeeeccccccCCCCeeEEEcCceEEEEEecCCceEEEEeccc
Confidence 4322 24567899999999999999998743 111111 12346788999999999999999999999999973
Q ss_pred -------------------C-----------------------------ceEEeeeecccccccceEEeecCC-------
Q 044070 457 -------------------G-----------------------------RLVYTSPIQNIAPILDMSVVDYHD------- 481 (903)
Q Consensus 457 -------------------~-----------------------------~~~~~~~l~N~gPI~D~~v~~~~~------- 481 (903)
| .+++++.+.|.|||+||++++.+.
T Consensus 422 ~~tiEtR~~eG~~~l~g~nDeEmdD~y~apEn~l~~n~~~~v~~~~~p~d~el~~~l~n~gpitdfavgkv~v~kglP~p 501 (1319)
T COG5161 422 LPTIETRASEGVGPLEGGNDEEMDDEYSAPENKLFGNKEQEVRRQDEPYDAELFNALSNAGPITDFAVGKVDVEKGLPIP 501 (1319)
T ss_pred CCchhhhhhcCCCcccCCChhhhhhhhcccccccccCcccceeeccCcchhHHhhhhccCCcccceeeeeccceecCCCC
Confidence 0 246789999999999999997652
Q ss_pred -CCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCC---CcceEEEEEecCceEEEEeCCccc
Q 044070 482 -EKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSD---PYHSFLVLSFVEETRVLRVGLNFT 557 (903)
Q Consensus 482 -~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~---~~~~~LvlS~~~~T~vl~~~~~~~ 557 (903)
.+.-.+|+.+|.+..|+|.+++..+.|.+-..+. ..++..+|+++..... .--.|+++|...+|.||+-++++.
T Consensus 502 N~g~l~lV~t~G~ds~~~l~V~~ts~~P~I~~~~~--fi~~e~vw~~kI~g~lr~~~~~~~~~ls~~s~S~If~~~e~f~ 579 (1319)
T COG5161 502 NIGLLNLVVTKGSDSEAALAVEGTSLEPCICTVSS--FIPLEIVWSQKIRGYLRCSRALDFYILSRVSDSRIFRWSEEFL 579 (1319)
T ss_pred CccceeeEEeccCCCcceEEEEeccccceeeehcc--ccchhheeehhccceehhcceeeEEEeecccccceeeccccce
Confidence 2456899999999999999999999999877775 7899999999886421 224689999999999999999988
Q ss_pred cccCcCCccCCCCeEEEEeeCC-CeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEecCCEEEEEEe
Q 044070 558 DVTDSVGFRPDVCTLACGLVAD-GLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTS 636 (903)
Q Consensus 558 e~~~~~~f~~~~~Tl~a~~~~~-~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~~~~vvva~~ 636 (903)
+.... .|..+..||.++.++. .++|||||+..++++.+.+ .......+.+.|++.+++|+++++...
T Consensus 580 l~~~g-~~~rd~~Tl~~~~fgee~rvVQvtp~~l~~yD~~lR-----------~l~~~~F~~~~V~~~Sv~Dp~ilvv~~ 647 (1319)
T COG5161 580 LEVSG-EYTRDVNTLLFVEFGEENRVVQVTPSYLLRYDQDLR-----------MLGRVEFASRAVEARSVRDPLILVVRD 647 (1319)
T ss_pred eeecc-eeeccccEEEeeeccCcceEEEecchHhhhhcccce-----------eeeeEeeceeeeEEEeccCCEEEEEEe
Confidence 87665 7999999999999986 5899999999999998865 244444334458899999999999999
Q ss_pred CCcEEEEEeE
Q 044070 637 NPCFLFILGV 646 (903)
Q Consensus 637 ~~~il~~~~~ 646 (903)
+|.+..|++.
T Consensus 648 ~g~i~~f~~~ 657 (1319)
T COG5161 648 SGKILTFYDR 657 (1319)
T ss_pred cCceEEEEeh
Confidence 9998888665
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.15 E-value=4.5 Score=48.54 Aligned_cols=316 Identities=12% Similarity=0.104 Sum_probs=158.1
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccC-CCCcceEEEECCCeEEEEEeeCCeEEEEEeCC------ceEEee
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYK-GPPCKALLWVEGRFLSAFVEMGDGMVLKEENG------RLVYTS 463 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~-~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~~------~~~~~~ 463 (903)
+..+|..+|.|+..++.+.... .++ .+. -....++..-.||.+|+.+....-++|+..+. .|. .
T Consensus 67 g~lllavdE~g~~~lvs~~~r~---Vlh----~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFv--l 137 (893)
T KOG0291|consen 67 GTLLLAVDERGRALLVSLLSRS---VLH----RFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFV--L 137 (893)
T ss_pred ceEEEEEcCCCcEEEEecccce---eeE----EEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcce--E
Confidence 5578888999999988876431 121 222 23456777778999999998888888888642 122 2
Q ss_pred eecccccccceEEeecC--C-------CC-CCeEEEEee---------CCCCCcEEEEeccCceeEEeecCCCCCCccEE
Q 044070 464 PIQNIAPILDMSVVDYH--D-------EK-RDQMFACCG---------VAPEGSLRIIRSGISLEKLLRTAPIYQGITGT 524 (903)
Q Consensus 464 ~l~N~gPI~D~~v~~~~--~-------~~-~~~lva~sG---------~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~i 524 (903)
.=.+.|+--|++-++-. + ++ ..+|+.+.+ .|..+.+-----|..-..+.... -.|.-.+
T Consensus 138 ~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs--kdG~l~~ 215 (893)
T KOG0291|consen 138 HRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS--KDGALFV 215 (893)
T ss_pred eeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe--cCceEEE
Confidence 22345565565544311 0 00 112222222 22233333333344444444443 4677788
Q ss_pred EEeeecCCCCcceEEEEEecCceEEEEeCCccccc--------cCcCCccCCCCeEEEEeeCCC--eEEEEEcCcEE-EE
Q 044070 525 WTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV--------TDSVGFRPDVCTLACGLVADG--LLVQIHQNAVR-LC 593 (903)
Q Consensus 525 Wtl~~~~~~~~~~~LvlS~~~~T~vl~~~~~~~e~--------~~~~~f~~~~~Tl~a~~~~~~--~ivQVT~~~ir-l~ 593 (903)
|+........... =-....+.--...++-||- .....|.-+..-+.|+.+-.+ .++-=-++++. |+
T Consensus 216 W~~~~~P~~~~~~---~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly 292 (893)
T KOG0291|consen 216 WTCDLRPPELDKA---EKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY 292 (893)
T ss_pred EEecCCCcccccc---cccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence 8876432110000 0000001001111111220 001122222234444444332 22222233333 43
Q ss_pred ccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeC-CcEEEEEeEEeccccceEEEEeeeccCCCceeE
Q 044070 594 MPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSN-PCFLFILGVRSLSVSHYEIYEMQHMRLQSELSC 670 (903)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~-~~il~~~~~~~~~~g~~~L~~~~~~~l~~eisc 670 (903)
..-.. ..+....-.+.+|..++.| ++.|++.++. |+++..+-. ....-|+++.+ -..++|
T Consensus 293 elP~f----------~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq----sEsYVlKQQgH---~~~i~~ 355 (893)
T KOG0291|consen 293 ELPDF----------NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ----SESYVLKQQGH---SDRITS 355 (893)
T ss_pred ecCCc----------eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee----ccceeeecccc---ccceee
Confidence 32211 1233332245679899998 8999988765 566654433 11223433332 367899
Q ss_pred EEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCC
Q 044070 671 ISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCI 750 (903)
Q Consensus 671 l~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~ 750 (903)
++..+. +.++|.|+.||.|+||+... .+..+... ...+. +
T Consensus 356 l~YSpD----------------------------gq~iaTG~eDgKVKvWn~~S--gfC~vTFt---------eHts~-V 395 (893)
T KOG0291|consen 356 LAYSPD----------------------------GQLIATGAEDGKVKVWNTQS--GFCFVTFT---------EHTSG-V 395 (893)
T ss_pred EEECCC----------------------------CcEEEeccCCCcEEEEeccC--ceEEEEec---------cCCCc-e
Confidence 998763 56999999999999998643 33333221 10111 1
Q ss_pred cceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 751 PQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 751 p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
.-+.+.. .+..|+..--||.+=.+.+.
T Consensus 396 -t~v~f~~-~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 396 -TAVQFTA-RGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred -EEEEEEe-cCCEEEEeecCCeEEeeeec
Confidence 2222222 35668888889999877764
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=95.42 E-value=6.9 Score=45.18 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=55.5
Q ss_pred eeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeec
Q 044070 660 QHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLT 739 (903)
Q Consensus 660 ~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~ 739 (903)
...++.++++|+++.+. ...+|||..|+.|+||+|...+..+..- .+.
T Consensus 438 ~~~~~~y~~s~vAv~~~----------------------------~~~vaVGG~Dgkvhvysl~g~~l~ee~~--~~~-- 485 (603)
T KOG0318|consen 438 SSIPIGYESSAVAVSPD----------------------------GSEVAVGGQDGKVHVYSLSGDELKEEAK--LLE-- 485 (603)
T ss_pred eeeccccccceEEEcCC----------------------------CCEEEEecccceEEEEEecCCcccceee--eec--
Confidence 44568899999999873 4589999999999999998766422211 110
Q ss_pred ccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 740 NTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 740 ~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
.. + .+..|.+. -+..||-+|=.++.++.|.+..
T Consensus 486 -h~-a-----~iT~vayS-pd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 486 -HR-A-----AITDVAYS-PDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred -cc-C-----CceEEEEC-CCCcEEEEeccCCcEEEEEccc
Confidence 00 0 11233222 2468999999999999998764
No 8
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.36 E-value=4.5 Score=47.89 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=86.4
Q ss_pred cceEEEEEEEecCCceeEEEEEEecCCCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCC
Q 044070 28 RNIHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNS 107 (903)
Q Consensus 28 ~~~~~~~~tl~~pt~V~~sl~g~f~~~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p 107 (903)
+-.+++...+..+..+.++. .+|+-+-|++..-..+.||++..++.+....-..++---+.+..+.+
T Consensus 370 ~~~~Llkl~~k~~~nIs~~a----iSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~f--------- 436 (691)
T KOG2048|consen 370 NYIHLLKLFTKEKENISCAA----ISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISF--------- 436 (691)
T ss_pred ChhhheeeecCCccceeeec----cCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEE---------
Confidence 44788888999998888777 56777888889999999999998875555444444442223333322
Q ss_pred CCCCccEEEEEe-CCCcEEEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeec
Q 044070 108 QVMGKDLLVVIS-DSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSM 183 (903)
Q Consensus 108 ~~~~~D~Llv~t-ds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~ 183 (903)
...++.|++.+ +.+.+ ..++.++..|.-+ +.+.+. .-......+++.|.|.++|+..-.+.+.||-++.
T Consensus 437 -tid~~k~~~~s~~~~~l--e~~el~~ps~kel--~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 437 -TIDKNKLFLVSKNIFSL--EEFELETPSFKEL--KSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLET 506 (691)
T ss_pred -EecCceEEEEeccccee--EEEEecCcchhhh--hccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEccc
Confidence 13456666666 33333 3334334333321 111111 1111224789999999999999999999988764
No 9
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=92.81 E-value=1.6 Score=50.17 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=44.2
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeeccc-CCCCCCCCCcceeEEeec--C-----ccEEEEEecCCcEEEE
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNT-MGTAISGCIPQDVRLVLA--D-----QFYVLAGLRNGMLLRF 776 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~-~~~~~s~~~p~si~l~~~--~-----~~~L~vgl~~G~l~~~ 776 (903)
-.|+|||..+|++.|+.+..... +....+ .+. .... +...+.++.+.-+ + .+.|+||+..|.++.|
T Consensus 97 iGFvaigy~~G~l~viD~RGPav---I~~~~i--~~~~~~~~-~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~f 170 (395)
T PF08596_consen 97 IGFVAIGYESGSLVVIDLRGPAV---IYNENI--RESFLSKS-SSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTF 170 (395)
T ss_dssp TSEEEEEETTSEEEEEETTTTEE---EEEEEG--GG--T-SS-----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEE
T ss_pred CcEEEEEecCCcEEEEECCCCeE---Eeeccc--cccccccc-cccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEE
Confidence 35999999999999999865443 322221 110 1111 1123455555443 2 5899999999999999
Q ss_pred EecCC
Q 044070 777 EWPPD 781 (903)
Q Consensus 777 ~~~~~ 781 (903)
++.+.
T Consensus 171 kIlp~ 175 (395)
T PF08596_consen 171 KILPS 175 (395)
T ss_dssp EEEE-
T ss_pred EEecC
Confidence 99763
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.20 E-value=16 Score=37.78 Aligned_cols=256 Identities=9% Similarity=0.054 Sum_probs=122.8
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEECCC-eEEEEEeeCCeEEEEEeCCceEEeeeecc-c
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGR-FLSAFVEMGDGMVLKEENGRLVYTSPIQN-I 468 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~~~-~lFvgS~~gds~L~~~~~~~~~~~~~l~N-~ 468 (903)
+..++.+.++|.++...+..... .... .........+....++ ++++++..|.=.+|.+... +.+..+.. -
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~~--~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~ 93 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGEL--LRTL---KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHT 93 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCCc--EEEE---ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEeccC
Confidence 45677788899998887764321 1111 1111122345555544 8888887665555555432 22333332 2
Q ss_pred ccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEe-cCce
Q 044070 469 APILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSF-VEET 547 (903)
Q Consensus 469 gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~-~~~T 547 (903)
++|..+..... .+++++++ .+|.+.+..-.- .+....+. .....+..+.... ...+++.+. .+.-
T Consensus 94 ~~i~~~~~~~~-----~~~~~~~~--~~~~i~~~~~~~-~~~~~~~~---~~~~~i~~~~~~~---~~~~l~~~~~~~~i 159 (289)
T cd00200 94 SYVSSVAFSPD-----GRILSSSS--RDKTIKVWDVET-GKCLTTLR---GHTDWVNSVAFSP---DGTFVASSSQDGTI 159 (289)
T ss_pred CcEEEEEEcCC-----CCEEEEec--CCCeEEEEECCC-cEEEEEec---cCCCcEEEEEEcC---cCCEEEEEcCCCcE
Confidence 36777665431 34666555 567777765431 12222221 1112344444432 145666655 3333
Q ss_pred EEEEeCC--ccccccCc------CCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCe
Q 044070 548 RVLRVGL--NFTDVTDS------VGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHV 619 (903)
Q Consensus 548 ~vl~~~~--~~~e~~~~------~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~ 619 (903)
.++.+.. .+...... ..|..+...++++.. ...|++++.... .....+.....
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------~~~i~i~d~~~~----------~~~~~~~~~~~ 220 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS---------DGTIKLWDLSTG----------KCLGTLRGHEN 220 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecC---------CCcEEEEECCCC----------ceecchhhcCC
Confidence 4555531 11111110 012222223333322 345566654422 12333322222
Q ss_pred eEEEEEecC-CEEEEEEe-CCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCC
Q 044070 620 SISLGAVAH-NMIIVSTS-NPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPA 697 (903)
Q Consensus 620 ~I~~As~~~-~~vvva~~-~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~ 697 (903)
.|...+... ..++++.. ++.+..+... .+ +...... .....|.++++.+.
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~----~~--~~~~~~~-~~~~~i~~~~~~~~--------------------- 272 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLR----TG--ECVQTLS-GHTNSVTSLAWSPD--------------------- 272 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEcC----Cc--eeEEEcc-ccCCcEEEEEECCC---------------------
Confidence 466655554 45555555 6666555322 11 2211111 33456888887652
Q ss_pred CCCccccceEEEEEecCCeEEEEE
Q 044070 698 LPAGVIIGYTFVIGTHRPSVEVLS 721 (903)
Q Consensus 698 ~~~~~~~~~~l~vg~~d~~v~i~s 721 (903)
..+++++..|+.+++|+
T Consensus 273 -------~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 273 -------GKRLASGSADGTIRIWD 289 (289)
T ss_pred -------CCEEEEecCCCeEEecC
Confidence 35888999999999984
No 11
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.13 E-value=27 Score=40.36 Aligned_cols=229 Identities=14% Similarity=0.105 Sum_probs=136.1
Q ss_pred EEEecCCceeEEEEEEecCC-CcCeEEEEcCCEEEEEEecC------C---CcEEEEEEEEeccceeEeeeeeccccccc
Q 044070 35 KCVLKGSVVLQVAHGHLRSP-TSNDVVFGKETSIELVIIGE------D---GIVQSVCEQAVFGTIKDLAVVPWNKKFNA 104 (903)
Q Consensus 35 ~tl~~pt~V~~sl~g~f~~~-~~~~LVv~k~~~LeIy~~~~------~---g~L~~v~~~~lfg~I~~i~~~~~~~~~~~ 104 (903)
.+.+=...|...-.|+|.+. ..+.|+|.-.+.|.||.+.. . -+|++++++.+--..-+|..-++
T Consensus 66 lE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~F------ 139 (418)
T PF14727_consen 66 LETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPF------ 139 (418)
T ss_pred EEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEEC------
Confidence 34555567899999999554 55679999999999999852 1 25899999998778888888776
Q ss_pred cCCCCCC-ccEEEEEeCCCcEEEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeec
Q 044070 105 QNSQVMG-KDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSM 183 (903)
Q Consensus 105 ~~p~~~~-~D~Llv~tds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~ 183 (903)
.+.. +|++.|-+-||.|+|.+-|.- -| ...++ + ...||++.-+ |+...+..+.....+.+|.+..
T Consensus 140 ---gg~~~~~~IcVQS~DG~L~~feqe~~--~f----~~~lp--~--~llPgPl~Y~-~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 140 ---GGVKGRDFICVQSMDGSLSFFEQESF--AF----SRFLP--D--FLLPGPLCYC-PRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred ---CCCCCceEEEEEecCceEEEEeCCcE--EE----EEEcC--C--CCCCcCeEEe-ecCCEEEEecCceeEEEecHHH
Confidence 4444 899999999999999866532 12 22332 2 4556764332 3455666666667788887643
Q ss_pred C---CC--Cccc--cccccCCCCccccCcccceeeeccccccEEEEEEeeCCCCCCCCCCCcEEEEEEeecCCccceEEE
Q 044070 184 S---SG--SDII--DKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLL 256 (903)
Q Consensus 184 ~---~~--~~~~--~~~~~sP~~~e~~~s~~~~~~~~~~~~~i~dm~FL~~~~~~~~~~~~PtlavL~~~~~~~~~~l~~ 256 (903)
= .+ .+.. ..+..+ .......|... ..-.++||+-... ....+.+.+|.+. ++.+
T Consensus 206 La~~s~~~~~~~~~~~~~~~------~k~l~~dWs~n-lGE~~l~i~v~~~------~~~~~~IvvLger------~Lf~ 266 (418)
T PF14727_consen 206 LASASEASSRQSGTEQDISS------GKKLNPDWSFN-LGEQALDIQVVRF------SSSESDIVVLGER------SLFC 266 (418)
T ss_pred hhhccccccccccccccccc------cccccceeEEE-CCceeEEEEEEEc------CCCCceEEEEecc------eEEE
Confidence 1 11 0000 000000 01111222211 1244889998887 2367888888774 3443
Q ss_pred EEEEccCCceeeeeeeecCCCCcceEEeecCCCC-----ceEEEeeCcEEEEecC
Q 044070 257 VGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYG-----FAFVFRIGDALLMDLR 306 (903)
Q Consensus 257 y~ldl~~~~~~vi~~~~~~~~~~~~li~vP~~~g-----gvlv~~~~~il~i~~~ 306 (903)
+. ..-. ....++. +-.|.+.....+|.-.. .++|.+++..+++...
T Consensus 267 l~--~~G~-l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d 317 (418)
T PF14727_consen 267 LK--DNGS-LRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED 317 (418)
T ss_pred Ec--CCCe-EEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC
Confidence 33 2221 1111222 22455666666644222 2778888887777653
No 12
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=92.12 E-value=31 Score=42.64 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=49.8
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceecc-CCCCcceEEEECCCeEEEEEeeCCeEEEEEeCCceE-Eeeeeccc
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLY-KGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLV-YTSPIQNI 468 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~-~~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~~~~~-~~~~l~N~ 468 (903)
+.+++.+..+|++-++.-..+.+ .+.... ......++ ..+.++|..|++.++=+.|++...... ++.++.
T Consensus 25 gefi~tcgsdg~ir~~~~~sd~e-----~P~ti~~~g~~v~~i-a~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft-- 96 (933)
T KOG1274|consen 25 GEFICTCGSDGDIRKWKTNSDEE-----EPETIDISGELVSSI-ACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFT-- 96 (933)
T ss_pred CCEEEEecCCCceEEeecCCccc-----CCchhhccCceeEEE-eecccceEEeeccceEEEeeCCCCCccceeeeee--
Confidence 55888999999998877655422 111111 11122222 235668899999999999999753322 455554
Q ss_pred ccccceEEe
Q 044070 469 APILDMSVV 477 (903)
Q Consensus 469 gPI~D~~v~ 477 (903)
-|+.|.++.
T Consensus 97 lp~r~~~v~ 105 (933)
T KOG1274|consen 97 LPIRDLAVS 105 (933)
T ss_pred ccceEEEEe
Confidence 389998875
No 13
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.10 E-value=5.2 Score=45.41 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=36.2
Q ss_pred CeEEEE-eCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEECC-CeEEEEEeeCCeEEEEEe
Q 044070 392 PKMVFC-VDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEG-RFLSAFVEMGDGMVLKEE 455 (903)
Q Consensus 392 ~~~LL~-~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~~-~~lFvgS~~gds~L~~~~ 455 (903)
..+|++ ++.|+||.=++.. |.-+.+ +...| ..-++|...++ .++|-||.-|+=..|.+.
T Consensus 93 G~~l~ag~i~g~lYlWelss-G~LL~v-~~aHY---Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSS-GILLNV-LSAHY---QSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ceEEEeecccCcEEEEEecc-ccHHHH-HHhhc---cceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 345555 5999999988875 321111 11123 23366666654 578888888887777775
No 14
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.09 E-value=6.6 Score=43.46 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.7
Q ss_pred ccEEEEEecCCcEEEEEecCCCC
Q 044070 761 QFYVLAGLRNGMLLRFEWPPDSN 783 (903)
Q Consensus 761 ~~~L~vgl~~G~l~~~~~~~~~~ 783 (903)
.+++.|+..||+++.|++++.+|
T Consensus 312 ~~~v~vas~dG~~y~y~l~~~~g 334 (391)
T KOG2110|consen 312 IPRVLVASYDGHLYSYRLPPKEG 334 (391)
T ss_pred CCEEEEEEcCCeEEEEEcCCCCC
Confidence 58999999999999999998654
No 15
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.48 E-value=25 Score=38.48 Aligned_cols=78 Identities=10% Similarity=0.240 Sum_probs=52.9
Q ss_pred CCeeEEEEEecC--CEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCC
Q 044070 617 EHVSISLGAVAH--NMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSS 694 (903)
Q Consensus 617 ~~~~I~~As~~~--~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~ 694 (903)
.+..|.+.+.+- ..|+=+...|+++-+... .+|+ .+.|..+=.-..+|-||++.+.
T Consensus 180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt---~~g~-~l~E~RRG~d~A~iy~iaFSp~------------------ 237 (346)
T KOG2111|consen 180 HDSDIACVALNLQGTLVATASTKGTLIRIFDT---EDGT-LLQELRRGVDRADIYCIAFSPN------------------ 237 (346)
T ss_pred ccCceeEEEEcCCccEEEEeccCcEEEEEEEc---CCCc-EeeeeecCCchheEEEEEeCCC------------------
Confidence 445688888874 344444456787754444 2442 4555444344577889999763
Q ss_pred CCCCCCccccceEEEEEecCCeEEEEEccCCC
Q 044070 695 VPALPAGVIIGYTFVIGTHRPSVEVLSFVPKE 726 (903)
Q Consensus 695 ~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~ 726 (903)
+.||||...-|||+||+|.+..
T Consensus 238 ----------~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 238 ----------SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----------ccEEEEEcCCCeEEEEEeecCC
Confidence 6799999999999999998743
No 16
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.01 E-value=31 Score=38.80 Aligned_cols=278 Identities=15% Similarity=0.144 Sum_probs=135.4
Q ss_pred EEEEEeeC----CeEEEEEeC--CceEEeeeecccccccceEEeecCCCCCCeEEEEeeCC-CCCcEEEEeccCc---ee
Q 044070 440 LSAFVEMG----DGMVLKEEN--GRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVA-PEGSLRIIRSGIS---LE 509 (903)
Q Consensus 440 lFvgS~~g----ds~L~~~~~--~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g-~~GsL~~lr~gi~---~~ 509 (903)
+|+|+-.. .=+.|+++. ..++.+......+.-.-+++.. ....||+++..+ ..|.+..++-.=. ++
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~----~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP----DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T----TSSEEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe----CCCEEEEEEccccCCCCEEEEEECCCcceeE
Confidence 67887773 334555532 3565555544333333344422 345788888776 7888888775542 34
Q ss_pred EEeecCCCCCCccEEEEeeecCCCCcceEEEEE-ecCceE-EEEeCCc--cccccC--------------------cCCc
Q 044070 510 KLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLS-FVEETR-VLRVGLN--FTDVTD--------------------SVGF 565 (903)
Q Consensus 510 ~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS-~~~~T~-vl~~~~~--~~e~~~--------------------~~~f 565 (903)
.+.... ..+-.-.| +.. +....||+++ +.+.+. ++.++++ +.+..+ ...|
T Consensus 78 ~~~~~~--~~g~~p~~-i~~---~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 78 LLNSVP--SGGSSPCH-IAV---DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEEEEE--ESSSCEEE-EEE---CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred Eeeeec--cCCCCcEE-EEE---ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE
Confidence 444332 12222222 222 2345677776 445443 6777542 222110 1234
Q ss_pred cCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEe-cCCeeEEEEEe--cCCEEEEEEeC-CcEE
Q 044070 566 RPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEHVSISLGAV--AHNMIIVSTSN-PCFL 641 (903)
Q Consensus 566 ~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~-~~~~~I~~As~--~~~~vvva~~~-~~il 641 (903)
..+.+.+++..++.+. |++++.+.... . + ....... +.|..=.+... .+.++.|+.+- +++.
T Consensus 152 ~pdg~~v~v~dlG~D~--------v~~~~~~~~~~--~--l--~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADR--------VYVYDIDDDTG--K--L--TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp -TTSSEEEEEETTTTE--------EEEEEE-TTS---T--E--EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred CCCCCEEEEEecCCCE--------EEEEEEeCCCc--e--E--EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 4455566666655443 33333221100 0 0 0001111 22222222222 34455555443 4454
Q ss_pred EEEeEEeccccceEEEEeeecc-----CC--CceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEec-
Q 044070 642 FILGVRSLSVSHYEIYEMQHMR-----LQ--SELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTH- 713 (903)
Q Consensus 642 ~~~~~~~~~~g~~~L~~~~~~~-----l~--~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~- 713 (903)
.|.... ..+ ++....... .. ...+.|.+.+. ..+|.|+..
T Consensus 218 v~~~~~--~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispd----------------------------g~~lyvsnr~ 265 (345)
T PF10282_consen 218 VFDYDP--SDG--SLTEIQTISTLPEGFTGENAPAEIAISPD----------------------------GRFLYVSNRG 265 (345)
T ss_dssp EEEEET--TTT--EEEEEEEEESCETTSCSSSSEEEEEE-TT----------------------------SSEEEEEECT
T ss_pred EEeecc--cCC--ceeEEEEeeeccccccccCCceeEEEecC----------------------------CCEEEEEecc
Confidence 443320 133 343322221 11 23556666542 458888876
Q ss_pred CCeEEEEEccCC-CCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEE-ecCCcEEEEEecCCCCC
Q 044070 714 RPSVEVLSFVPK-EGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAG-LRNGMLLRFEWPPDSNI 784 (903)
Q Consensus 714 d~~v~i~sl~~~-~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vg-l~~G~l~~~~~~~~~~~ 784 (903)
+++|.+|.+++. ..|+.+.. ++. ++ ..|+.+.+..-++ +|+++ -.++.+..|++|..+|.
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~--~~~----~G----~~Pr~~~~s~~g~-~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQT--VPT----GG----KFPRHFAFSPDGR-YLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEE--EEE----SS----SSEEEEEE-TTSS-EEEEEETTTTEEEEEEEETTTTE
T ss_pred CCEEEEEEEecCCCceEEEEE--EeC----CC----CCccEEEEeCCCC-EEEEEecCCCeEEEEEEeCCCCc
Confidence 889999999543 34554432 221 12 3689998755444 45554 57889999999988774
No 17
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=90.75 E-value=4.6 Score=47.03 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=42.6
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec--CccEEEEEecCCcEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA--DQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~--~~~~L~vgl~~G~l~~~~~~~ 780 (903)
..+||+|+.+|.|+.|.-...+....+.. ...+...++.+. . .++.-+.+ +.+.+-||+.+|.++.|.+..
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~-~~~v~s~pg~~~---~-~svTal~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDA-ASSVNSHPGGDA---A-PSVTALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeec-ccccCCCccccc---c-CcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence 46999999999999997554443221110 001111122211 1 23333344 268899999999999999864
No 18
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.40 E-value=5.8 Score=36.81 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=37.8
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..-|+||+.|..|+||. ..+.+..+.+ .+ . =..|..++.....-||.||.+-.|+-.
T Consensus 15 ~~eLlvGs~D~~IRvf~--~~e~~~Ei~e----------~~----~--v~~L~~~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFK--GDEIVAEITE----------TD----K--VTSLCSLGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred cceEEEecCCcEEEEEe--CCcEEEEEec----------cc----c--eEEEEEcCCCEEEEEecCCEEEEEeCc
Confidence 46788999999999996 3343322221 11 1 223455555678889999999999754
No 19
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.17 E-value=14 Score=41.07 Aligned_cols=154 Identities=9% Similarity=0.109 Sum_probs=97.0
Q ss_pred eEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEecCC--EEEEE--EeCCcEEEEEeE
Q 044070 571 TLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHN--MIIVS--TSNPCFLFILGV 646 (903)
Q Consensus 571 Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~~~--~vvva--~~~~~il~~~~~ 646 (903)
.|.+-.|...++|-+-+..|.+++...-+ .-+.+.+|.|......+-+.+.. |++.= ...|++++|...
T Consensus 89 ~IL~VrmNr~RLvV~Lee~IyIydI~~Mk-------lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 89 SILAVRMNRKRLVVCLEESIYIYDIKDMK-------LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred ceEEEEEccceEEEEEcccEEEEecccce-------eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence 45566676778888888889888765321 02345677552233545555543 55432 234677766333
Q ss_pred EeccccceEEEEeeec-cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCe-EEEEEccC
Q 044070 647 RSLSVSHYEIYEMQHM-RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPS-VEVLSFVP 724 (903)
Q Consensus 647 ~~~~~g~~~L~~~~~~-~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~-v~i~sl~~ 724 (903)
.|+.+..+ ..++.++||++.+. ..+||.+...|+ ||||+.++
T Consensus 162 --------nl~~v~~I~aH~~~lAalafs~~----------------------------G~llATASeKGTVIRVf~v~~ 205 (391)
T KOG2110|consen 162 --------NLQPVNTINAHKGPLAALAFSPD----------------------------GTLLATASEKGTVIRVFSVPE 205 (391)
T ss_pred --------cceeeeEEEecCCceeEEEECCC----------------------------CCEEEEeccCceEEEEEEcCC
Confidence 23333222 45788999999773 568999988775 89999987
Q ss_pred CCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec--CccEEEEEecCCcEEEEEecCC
Q 044070 725 KEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA--DQFYVLAGLRNGMLLRFEWPPD 781 (903)
Q Consensus 725 ~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~--~~~~L~vgl~~G~l~~~~~~~~ 781 (903)
.+.+...-. | ..|.+|.-..+ +..+|-+.-..|.+-.|+++..
T Consensus 206 G~kl~eFRR---------G-----~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 206 GQKLYEFRR---------G-----TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred ccEeeeeeC---------C-----ceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 665433321 1 13445443344 4678999999999999999754
No 20
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.90 E-value=5.8 Score=42.80 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=45.3
Q ss_pred CCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCC
Q 044070 665 QSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGT 744 (903)
Q Consensus 665 ~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~ 744 (903)
++.|++|++++.. ..++++|.||++||+|.+.....+..-+.+.+ ++
T Consensus 27 ~DsIS~l~FSP~~---------------------------~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~------~~ 73 (347)
T KOG0647|consen 27 EDSISALAFSPQA---------------------------DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSH------DG 73 (347)
T ss_pred ccchheeEecccc---------------------------CceEEecccCCceEEEEEecCCcccchhhhcc------CC
Confidence 5778999987721 46888999999999999876433322221111 11
Q ss_pred CCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 745 AISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 745 ~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
.+-++.-.. +...++.|--||.+-.|.+.
T Consensus 74 -----PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 74 -----PVLDVCWSD-DGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred -----CeEEEEEcc-CCceEEeeccCCceEEEEcc
Confidence 111222221 24567777777777666654
No 21
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=89.51 E-value=25 Score=39.09 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=75.4
Q ss_pred CeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCCCcEEEEEEeCCCcce
Q 044070 57 NDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRF 136 (903)
Q Consensus 57 ~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d~~~~~f 136 (903)
..||++-++.|.+|++..+.+|...+.+...-.|.++.+++ ++++++.-..-+.+++|+.+..+|
T Consensus 99 ~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~---------------~~I~vgD~~~sv~~~~~~~~~~~l 163 (321)
T PF03178_consen 99 GRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK---------------NYILVGDAMKSVSLLRYDEENNKL 163 (321)
T ss_dssp TEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET---------------TEEEEEESSSSEEEEEEETTTE-E
T ss_pred CEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccc---------------cEEEEEEcccCEEEEEEEccCCEE
Confidence 44999999999999998666699999998777888988873 689999889999999999987778
Q ss_pred EeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeec
Q 044070 137 FPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSM 183 (903)
Q Consensus 137 ~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~ 183 (903)
.-++.....+. .. .--..+|. +.++++-..+++.++-.+.
T Consensus 164 ~~va~d~~~~~-v~----~~~~l~d~--~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 164 ILVARDYQPRW-VT----AAEFLVDE--DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEESS-BE-EE----EEEEE-SS--SEEEEEETTSEEEEEEE-S
T ss_pred EEEEecCCCcc-EE----EEEEecCC--cEEEEEcCCCeEEEEEECC
Confidence 77654333111 00 00122265 3778888888888887754
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.99 E-value=57 Score=38.83 Aligned_cols=109 Identities=15% Similarity=0.270 Sum_probs=63.1
Q ss_pred ceEEEECCC---eEEEEEeeCCeEEEEEe-CCceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEecc
Q 044070 430 KALLWVEGR---FLSAFVEMGDGMVLKEE-NGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSG 505 (903)
Q Consensus 430 ssl~~l~~~---~lFvgS~~gds~L~~~~-~~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~g 505 (903)
.++.|+..| +|.-|++ -.++++= -.+-.+++++.+..-=+.++.-.. .-.|++ +| +.+|++|+-+..
T Consensus 187 N~Vdyy~~gdkpylIsgaD---D~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp----~lpiii-sg-sEDGTvriWhs~ 257 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGAD---DLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP----ELPIII-SG-SEDGTVRIWNSK 257 (794)
T ss_pred ceEEeccCCCcceEEecCC---CceEEEeecchHHHHHHhhcccccceEEEecC----CCcEEE-Ee-cCCccEEEecCc
Confidence 567777655 7776643 3333332 122244566665444444443321 122333 33 368999988765
Q ss_pred Cc-eeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEeCCc
Q 044070 506 IS-LEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLN 555 (903)
Q Consensus 506 i~-~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~~~~ 555 (903)
-- .+.. +.-+..++|.+..... +.-+.+.|.+.+.+++++.+
T Consensus 258 Ty~lE~t-----Ln~gleRvW~I~~~k~---~~~i~vG~Deg~i~v~lgre 300 (794)
T KOG0276|consen 258 TYKLEKT-----LNYGLERVWCIAAHKG---DGKIAVGFDEGSVTVKLGRE 300 (794)
T ss_pred ceehhhh-----hhcCCceEEEEeecCC---CCeEEEeccCCcEEEEccCC
Confidence 32 2221 2347789999986532 34588899999999998754
No 23
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=88.26 E-value=54 Score=37.63 Aligned_cols=161 Identities=16% Similarity=0.235 Sum_probs=96.1
Q ss_pred CCcCeEEEEc-CCEEEEEEecCCCcEEE-EEEEEecc-ceeEeeeeeccccccccCCCCCCccEEEEEeCCCcEEEEEEe
Q 044070 54 PTSNDVVFGK-ETSIELVIIGEDGIVQS-VCEQAVFG-TIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFC 130 (903)
Q Consensus 54 ~~~~~LVv~k-~~~LeIy~~~~~g~L~~-v~~~~lfg-~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d 130 (903)
+...-|++|+ ++.|+||.++ |+... |.+..+=+ .|..+. | .| .+...++. ..-+=.+..||
T Consensus 223 p~~plllvaG~d~~lrifqvD--Gk~N~~lqS~~l~~fPi~~a~-f---------~p--~G~~~i~~--s~rrky~ysyD 286 (514)
T KOG2055|consen 223 PTAPLLLVAGLDGTLRIFQVD--GKVNPKLQSIHLEKFPIQKAE-F---------AP--NGHSVIFT--SGRRKYLYSYD 286 (514)
T ss_pred CCCceEEEecCCCcEEEEEec--CccChhheeeeeccCccceee-e---------cC--CCceEEEe--cccceEEEEee
Confidence 5556666676 8999999996 43222 22222222 233322 2 12 23334443 44555678899
Q ss_pred CCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeecCCCCccccccccCCCCccccCccccee
Q 044070 131 NEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPSESEVDTSASRIA 210 (903)
Q Consensus 131 ~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~~~~~~~~~~~~~sP~~~e~~~s~~~~~ 210 (903)
..+.++..+ .++.......-++..|.|.+..||+....+++-++--....- + -
T Consensus 287 le~ak~~k~-----~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-------i-------------~-- 339 (514)
T KOG2055|consen 287 LETAKVTKL-----KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-------I-------------T-- 339 (514)
T ss_pred ccccccccc-----cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-------h-------------h--
Confidence 988887653 333333333335789999999999999999887764332110 0 1
Q ss_pred eeccccccEEEEEEeeCCCCCCCCCCCcEEEEEEeecCCccceEEEEEEEccCCceeeeeeeecCC
Q 044070 211 QKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLSCFFEAG 276 (903)
Q Consensus 211 ~~~~~~~~i~dm~FL~~~~~~~~~~~~PtlavL~~~~~~~~~~l~~y~ldl~~~~~~vi~~~~~~~ 276 (903)
-.+.++.|-+++|-.. .. .|.+...+ + -+|.||++++ +++.+|...+
T Consensus 340 -s~KieG~v~~~~fsSd--------sk-~l~~~~~~----G---eV~v~nl~~~--~~~~rf~D~G 386 (514)
T KOG2055|consen 340 -SFKIEGVVSDFTFSSD--------SK-ELLASGGT----G---EVYVWNLRQN--SCLHRFVDDG 386 (514)
T ss_pred -eeeeccEEeeEEEecC--------Cc-EEEEEcCC----c---eEEEEecCCc--ceEEEEeecC
Confidence 1345789999999854 12 22222111 1 5789999998 7888888664
No 24
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.17 E-value=18 Score=40.78 Aligned_cols=104 Identities=25% Similarity=0.251 Sum_probs=73.7
Q ss_pred EcCCEEEEEEec-CCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeC----CCcEEEEEEeCCCcce
Q 044070 62 GKETSIELVIIG-EDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISD----SGKLSFLAFCNEMHRF 136 (903)
Q Consensus 62 ~k~~~LeIy~~~-~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~td----s~~l~iL~~d~~~~~f 136 (903)
.++.-|.+|+++ ++|+|+.+.....=+...-++. ....++|.++.+ .+.++.+.++.++.++
T Consensus 10 ~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~-------------~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L 76 (345)
T PF10282_consen 10 GKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAV-------------SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL 76 (345)
T ss_dssp SSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE--------------TTSSEEEEEETTSSTTTEEEEEEEETTTTEE
T ss_pred CCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEE-------------EeCCCEEEEEEccccCCCCEEEEEECCCccee
Confidence 345678899994 6788888777553334444432 135588888877 5789999999887777
Q ss_pred EeeEEEEecCCCcccccCCcEEEECCCCCeeEEeec-cccEEEEEeecC
Q 044070 137 FPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAY-EDRLGLFSLSMS 184 (903)
Q Consensus 137 ~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~-e~~l~v~pl~~~ 184 (903)
..+...... |.. .-++++||.+|++.++.| .+.+.+|++..+
T Consensus 77 ~~~~~~~~~--g~~----p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 77 TLLNSVPSG--GSS----PCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp EEEEEEEES--SSC----EEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEeeeeccC--CCC----cEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 766554431 111 238999999999999987 888999998764
No 25
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.10 E-value=30 Score=42.58 Aligned_cols=122 Identities=13% Similarity=0.201 Sum_probs=68.2
Q ss_pred eEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEE-EEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCC
Q 044070 620 SISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEI-YEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPAL 698 (903)
Q Consensus 620 ~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L-~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~ 698 (903)
.|.+++.+...|++....|.++.+- + .+++ ......+.+ .|..|.+..
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln------~-s~~~~~~fqa~~~s-iv~~L~~~~----------------------- 75 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN------S-SFQLIRGFQAYEQS-IVQFLYILN----------------------- 75 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec------c-cceeeehheecchh-hhhHhhccc-----------------------
Confidence 6888888888999998888887651 1 1233 111222222 233333322
Q ss_pred CCccccceEEEEEecCC----eEEEEEccCCCCee-E--EEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCC
Q 044070 699 PAGVIIGYTFVIGTHRP----SVEVLSFVPKEGLR-V--LASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNG 771 (903)
Q Consensus 699 ~~~~~~~~~l~vg~~d~----~v~i~sl~~~~~l~-~--~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G 771 (903)
+...++.||-.++ .|+||+|++.+.-. + +....+..-.+. .. .-|.+++.+...-..+.||..||
T Consensus 76 ----~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np-~~---~~p~s~l~Vs~~l~~Iv~Gf~nG 147 (933)
T KOG2114|consen 76 ----KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNP-TN---PSPASSLAVSEDLKTIVCGFTNG 147 (933)
T ss_pred ----CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCC-CC---CCcceEEEEEccccEEEEEecCc
Confidence 1145667777644 79999998643211 1 111122100111 11 14556655555566799999999
Q ss_pred cEEEEEecC
Q 044070 772 MLLRFEWPP 780 (903)
Q Consensus 772 ~l~~~~~~~ 780 (903)
.++.|+=|.
T Consensus 148 ~V~~~~GDi 156 (933)
T KOG2114|consen 148 LVICYKGDI 156 (933)
T ss_pred EEEEEcCcc
Confidence 999998553
No 26
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.04 E-value=6.5 Score=44.88 Aligned_cols=112 Identities=12% Similarity=0.132 Sum_probs=62.4
Q ss_pred CCeeEEEEEecCC-EEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 617 EHVSISLGAVAHN-MIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 617 ~~~~I~~As~~~~-~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
.|.+|.....-.+ .++++..++++-..... .|...+. ...+...+|+||.+...
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~----~G~qll~--~~~~H~KtVTcL~l~s~------------------- 249 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGNSVKVWDLT----TGGQLLT--SMFNHNKTVTCLRLASD------------------- 249 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCCeEEEEEec----CCceehh--hhhcccceEEEEEeecC-------------------
Confidence 4555555444433 44444344444333222 2322222 33446789999999762
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEE
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLR 775 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~ 775 (903)
+.-|..|.-|+.|.+|++...+ .+..-..+ ++ + -|+.+.+ +...+.+||.||.+..
T Consensus 250 ---------~~rLlS~sLD~~VKVfd~t~~K---vv~s~~~~------~p----v-Lsiavs~-dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 250 ---------STRLLSGSLDRHVKVFDTTNYK---VVHSWKYP------GP----V-LSIAVSP-DDQTVVIGMSNGLVSI 305 (487)
T ss_pred ---------CceEeecccccceEEEEccceE---EEEeeecc------cc----e-eeEEecC-CCceEEEecccceeee
Confidence 2355567779999999976544 33321111 11 1 2444443 4577999999999976
Q ss_pred EE
Q 044070 776 FE 777 (903)
Q Consensus 776 ~~ 777 (903)
-+
T Consensus 306 rr 307 (487)
T KOG0310|consen 306 RR 307 (487)
T ss_pred eh
Confidence 63
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=87.78 E-value=36 Score=35.05 Aligned_cols=265 Identities=12% Similarity=0.130 Sum_probs=122.6
Q ss_pred ceEEEECC-CeEEEEEeeCCeEEEEEeCCceEEeeee-cccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCc
Q 044070 430 KALLWVEG-RFLSAFVEMGDGMVLKEENGRLVYTSPI-QNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGIS 507 (903)
Q Consensus 430 ssl~~l~~-~~lFvgS~~gds~L~~~~~~~~~~~~~l-~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~ 507 (903)
+++..-.+ +++++|+..|.=.+|.+.... ....+ ..-+++..+..... . +.+++++. +|.+.+....-+
T Consensus 13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~----~-~~l~~~~~--~~~i~i~~~~~~ 83 (289)
T cd00200 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASAD----G-TYLASGSS--DKTIRLWDLETG 83 (289)
T ss_pred EEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCC----C-CEEEEEcC--CCeEEEEEcCcc
Confidence 44544443 677777765555566655332 22222 22345555554331 1 33444432 677877765421
Q ss_pred eeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEe-cCceEEEEeCC-c-cccccCcCCccCCCCeEEEEeeCC-Ce-E
Q 044070 508 LEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSF-VEETRVLRVGL-N-FTDVTDSVGFRPDVCTLACGLVAD-GL-L 582 (903)
Q Consensus 508 ~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~-~~~T~vl~~~~-~-~~e~~~~~~f~~~~~Tl~a~~~~~-~~-i 582 (903)
+.+..+. .....++.+..... ..+++.+. .+.-.++.+.. . ...+.. ....+.+-.+.. +. +
T Consensus 84 -~~~~~~~---~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l 150 (289)
T cd00200 84 -ECVRTLT---GHTSYVSSVAFSPD---GRILSSSSRDKTIKVWDVETGKCLTTLRG------HTDWVNSVAFSPDGTFV 150 (289)
T ss_pred -cceEEEe---ccCCcEEEEEEcCC---CCEEEEecCCCeEEEEECCCcEEEEEecc------CCCcEEEEEEcCcCCEE
Confidence 1121221 11124555554321 35666555 34444555531 1 111110 011122222211 22 2
Q ss_pred EEEE-cCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEecCC--EEEEEEeCCcEEEEEeEEeccccceEEEEe
Q 044070 583 VQIH-QNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHN--MIIVSTSNPCFLFILGVRSLSVSHYEIYEM 659 (903)
Q Consensus 583 vQVT-~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~~~--~vvva~~~~~il~~~~~~~~~~g~~~L~~~ 659 (903)
+=.+ ...|++++.... .....+......|.+.+...+ +++++..++.+..+... .+ +. .
T Consensus 151 ~~~~~~~~i~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~----~~--~~--~ 212 (289)
T cd00200 151 ASSSQDGTIKLWDLRTG----------KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS----TG--KC--L 212 (289)
T ss_pred EEEcCCCcEEEEEcccc----------ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECC----CC--ce--e
Confidence 2222 455666665422 123333332335666666543 66666666666554221 11 11 1
Q ss_pred eec-cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeee
Q 044070 660 QHM-RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVL 738 (903)
Q Consensus 660 ~~~-~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~ 738 (903)
... .....+.+++..+. ..+++++..|+.|.+|++...+.+..+.
T Consensus 213 ~~~~~~~~~i~~~~~~~~----------------------------~~~~~~~~~~~~i~i~~~~~~~~~~~~~------ 258 (289)
T cd00200 213 GTLRGHENGVNSVAFSPD----------------------------GYLLASGSEDGTIRVWDLRTGECVQTLS------ 258 (289)
T ss_pred cchhhcCCceEEEEEcCC----------------------------CcEEEEEcCCCcEEEEEcCCceeEEEcc------
Confidence 222 33456778777542 3577777779999999987543322111
Q ss_pred cccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEE
Q 044070 739 TNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRF 776 (903)
Q Consensus 739 ~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~ 776 (903)
+.. ....++.+.. ...+|+.+..||.+..|
T Consensus 259 ----~~~---~~i~~~~~~~-~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 259 ----GHT---NSVTSLAWSP-DGKRLASGSADGTIRIW 288 (289)
T ss_pred ----ccC---CcEEEEEECC-CCCEEEEecCCCeEEec
Confidence 000 0113333332 24678899999988765
No 28
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=86.95 E-value=87 Score=38.60 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=128.3
Q ss_pred ceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcce
Q 044070 458 RLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHS 537 (903)
Q Consensus 458 ~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~ 537 (903)
.++.+..+.|==| +.+.... ..-.+.+|.|. --.+..+=..+.+...++.+..+. .+.. +.+
T Consensus 26 pfR~lG~vsn~VP---~~~~~~~--~~~~vtt~vgk-----sfqvYd~~kl~ll~vs~~lp~~I~---alas-----~~~ 87 (910)
T KOG1539|consen 26 PFRALGYVSNGVP---FRVVALG--STFYVTTCVGK-----SFQVYDVNKLNLLFVSKPLPDKIT---ALAS-----DKD 87 (910)
T ss_pred chhhhceecCCCc---eeeeecC--ceEEEEEecCc-----eEEEEeccceEEEEecCCCCCceE---EEEe-----cCc
Confidence 3455566666656 4444432 12234444442 223444444555544433343444 4432 246
Q ss_pred EEEEEecCceEEEEeCCccccccCcCCccCCCCeEEEEeeCCCeEEEEEcCcEEEE-ccCcccccCCCCCCCCeeeeEec
Q 044070 538 FLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLC-MPTMVAHSGGIPLSYPVCTSWFP 616 (903)
Q Consensus 538 ~LvlS~~~~T~vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~-~~~~~~~~~~~~~~~~~~~~w~~ 616 (903)
|.++.+.+.=.+++.+..+...... .+.++..=...+..++-|+.+++..+ .....+-+.. .-.....
T Consensus 88 ~vy~A~g~~i~~~~rgk~i~~~~~~-----~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~------l~~~~~~ 156 (910)
T KOG1539|consen 88 YVYVASGNKIYAYARGKHIRHTTLL-----HGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELY------LQSTFLK 156 (910)
T ss_pred eEEEecCcEEEEEEccceEEEEecc-----ccceEEEEeeecceEEEEEccCcEEEEEecccccccc------ccceeee
Confidence 8888888888888877554443322 11122221122345555555554443 2221100000 0122232
Q ss_pred -CCeeE---EEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCC
Q 044070 617 -EHVSI---SLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSN 692 (903)
Q Consensus 617 -~~~~I---~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~ 692 (903)
.+..| .+-+..=+.|++..+.|.+.++..- .+ ..+.+.. .....|+|+.=.+.
T Consensus 157 ~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvr----t~-K~v~~f~--~~~s~IT~ieqsPa---------------- 213 (910)
T KOG1539|consen 157 VEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVR----TG-KVVYTFQ--EFFSRITAIEQSPA---------------- 213 (910)
T ss_pred ccCCceeeEecchhheeeEEEeecCCcEEEEEec----cC-cEEEEec--ccccceeEeccCCc----------------
Confidence 23224 3344444566777778887766432 22 1222223 33477887743331
Q ss_pred CCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCc
Q 044070 693 SSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGM 772 (903)
Q Consensus 693 ~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~ 772 (903)
=+++|||+.+|+|.|++++.++.|...- |+ + + . + .++.+-.-|.+.|..|-.+|.
T Consensus 214 ------------LDVVaiG~~~G~ViifNlK~dkil~sFk-~d--~-----g---~-V-tslSFrtDG~p~las~~~~G~ 268 (910)
T KOG1539|consen 214 ------------LDVVAIGLENGTVIIFNLKFDKILMSFK-QD--W-----G---R-V-TSLSFRTDGNPLLASGRSNGD 268 (910)
T ss_pred ------------ceEEEEeccCceEEEEEcccCcEEEEEE-cc--c-----c---c-e-eEEEeccCCCeeEEeccCCce
Confidence 4699999999999999998777553221 11 0 1 1 2 455555557888889999999
Q ss_pred EEEEEecC
Q 044070 773 LLRFEWPP 780 (903)
Q Consensus 773 l~~~~~~~ 780 (903)
+..|.++.
T Consensus 269 m~~wDLe~ 276 (910)
T KOG1539|consen 269 MAFWDLEK 276 (910)
T ss_pred EEEEEcCC
Confidence 99998864
No 29
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.75 E-value=27 Score=42.30 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceE
Q 044070 628 HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYT 707 (903)
Q Consensus 628 ~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (903)
+.||++...+|++-.|... + ..|.|..+ ..+..|-.|++.+. ...
T Consensus 424 d~~Iv~G~k~Gel~vfdla----S--~~l~Eti~-AHdgaIWsi~~~pD----------------------------~~g 468 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLA----S--ASLVETIR-AHDGAIWSISLSPD----------------------------NKG 468 (888)
T ss_pred CceEEEeccCCceEEEEee----h--hhhhhhhh-ccccceeeeeecCC----------------------------CCc
Confidence 7899999999999888655 1 13544322 55677778887764 335
Q ss_pred EEEEecCCeEEEEEccCCCCeeEEEeee-eeecccCCCCCCCCCcceeEEeec--CccEEEEEecCCcEEEEEecCC
Q 044070 708 FVIGTHRPSVEVLSFVPKEGLRVLASGS-IVLTNTMGTAISGCIPQDVRLVLA--DQFYVLAGLRNGMLLRFEWPPD 781 (903)
Q Consensus 708 l~vg~~d~~v~i~sl~~~~~l~~~s~~~-l~~~~~~~~~~s~~~p~si~l~~~--~~~~L~vgl~~G~l~~~~~~~~ 781 (903)
++.|..|.+|.+|++.-... ++-+... +++.+. .-..++++++-+.. +.-||-|||-|..+-.|-+|..
T Consensus 469 ~vT~saDktVkfWdf~l~~~-~~gt~~k~lsl~~~----rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl 540 (888)
T KOG0306|consen 469 FVTGSADKTVKFWDFKLVVS-VPGTQKKVLSLKHT----RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL 540 (888)
T ss_pred eEEecCCcEEEEEeEEEEec-cCcccceeeeeccc----eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce
Confidence 66788899999998742110 0000000 111100 00125566666665 4789999999999999998853
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.25 E-value=48 Score=34.89 Aligned_cols=136 Identities=12% Similarity=0.160 Sum_probs=79.4
Q ss_pred cCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec-CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCC
Q 044070 587 QNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA-HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQ 665 (903)
Q Consensus 587 ~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~-~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~ 665 (903)
.+-|||.++... ..+.++...|..|..|+.. |+-=+-+..+..-+++-+. ++| +... .-+...
T Consensus 38 drtvrLWNp~rg----------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV---~TG--kv~R-r~rgH~ 101 (307)
T KOG0316|consen 38 DRTVRLWNPLRG----------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV---NTG--KVDR-RFRGHL 101 (307)
T ss_pred CceEEeeccccc----------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEc---ccC--eeee-eccccc
Confidence 456777776643 3455554466677777665 3322333333334444343 244 3222 122446
Q ss_pred CceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCC
Q 044070 666 SELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTA 745 (903)
Q Consensus 666 ~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~ 745 (903)
.||-.+.+.+. +.+++-|..|.+|++|.-.... .+++ |.+. ..
T Consensus 102 aqVNtV~fNee----------------------------sSVv~SgsfD~s~r~wDCRS~s-~ePi--Qild------ea 144 (307)
T KOG0316|consen 102 AQVNTVRFNEE----------------------------SSVVASGSFDSSVRLWDCRSRS-FEPI--QILD------EA 144 (307)
T ss_pred ceeeEEEecCc----------------------------ceEEEeccccceeEEEEcccCC-CCcc--chhh------hh
Confidence 77877776541 5689999999999999876543 3333 2211 11
Q ss_pred CCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 746 ISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 746 ~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
-..+.-+.+....++.|--||.+-+|.+..
T Consensus 145 -----~D~V~Si~v~~heIvaGS~DGtvRtydiR~ 174 (307)
T KOG0316|consen 145 -----KDGVSSIDVAEHEIVAGSVDGTVRTYDIRK 174 (307)
T ss_pred -----cCceeEEEecccEEEeeccCCcEEEEEeec
Confidence 123333333477899999999999999864
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=85.02 E-value=36 Score=36.64 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=45.2
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec-CccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA-DQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~-~~~~L~vgl~~G~l~~~~~~ 779 (903)
.+||++++..+ |.||+++....++.+...-. +......-|.++.++-. ++..||+|..||.+-.+++.
T Consensus 245 rywL~~at~~s-IkIwdl~~~~~v~~l~~d~~------g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 245 RYWLCAATATS-IKIWDLESKAVVEELKLDGI------GPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ceeEeeccCCc-eEEEeccchhhhhhcccccc------ccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 67998887655 99999988766544432111 11000123567777755 57889999999999988864
No 32
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=84.92 E-value=70 Score=35.64 Aligned_cols=194 Identities=10% Similarity=0.123 Sum_probs=0.0
Q ss_pred EEEEEEecCCCcCeEEE-EcCCEEEEEEecCCCcEEEEEEEEecc--ceeEeeeeeccccccccCCCCCCccEEEEEeC-
Q 044070 45 QVAHGHLRSPTSNDVVF-GKETSIELVIIGEDGIVQSVCEQAVFG--TIKDLAVVPWNKKFNAQNSQVMGKDLLVVISD- 120 (903)
Q Consensus 45 ~sl~g~f~~~~~~~LVv-~k~~~LeIy~~~~~g~L~~v~~~~lfg--~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~td- 120 (903)
|+=.++|+...+-=+++ .|..++-+|++. +|+|+...+..+=. =.|.|. -..+.++.-+.++
T Consensus 146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~-dg~L~~~~~~~v~~G~GPRHi~-------------FHpn~k~aY~v~EL 211 (346)
T COG2706 146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLD-DGKLTPADPAEVKPGAGPRHIV-------------FHPNGKYAYLVNEL 211 (346)
T ss_pred ccceeeeCCCCCEEEEeecCCceEEEEEcc-cCccccccccccCCCCCcceEE-------------EcCCCcEEEEEecc
Q ss_pred CCcEEEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEee-ccccEEEEEeecCCCCccccccccCCCC
Q 044070 121 SGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSA-YEDRLGLFSLSMSSGSDIIDKKICYPSE 199 (903)
Q Consensus 121 s~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~-~e~~l~v~pl~~~~~~~~~~~~~~sP~~ 199 (903)
+..+.+++||+..++|..+..+..-........-+.-+.+.|+||.+-++- ..+.+++|-+..+....
T Consensus 212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L----------- 280 (346)
T COG2706 212 NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL----------- 280 (346)
T ss_pred CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE-----------
Q ss_pred ccccCcccceeeecccccc-EEEEEEeeCCCCCCCCCCCcEEEEEEeecCCccceEEEEEEEccCCceeeeee-eecCCC
Q 044070 200 SEVDTSASRIAQKNSISGT-IWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLSC-FFEAGP 277 (903)
Q Consensus 200 ~e~~~s~~~~~~~~~~~~~-i~dm~FL~~~~~~~~~~~~PtlavL~~~~~~~~~~l~~y~ldl~~~~~~vi~~-~~~~~~ 277 (903)
..+.....++. -.|+.|=++ .-.|++..|+ .-.+++|+.|-.....+.+.+ ...+.|
T Consensus 281 --------~~~~~~~teg~~PR~F~i~~~---------g~~Liaa~q~----sd~i~vf~~d~~TG~L~~~~~~~~~p~P 339 (346)
T COG2706 281 --------ELVGITPTEGQFPRDFNINPS---------GRFLIAANQK----SDNITVFERDKETGRLTLLGRYAVVPEP 339 (346)
T ss_pred --------EEEEEeccCCcCCccceeCCC---------CCEEEEEccC----CCcEEEEEEcCCCceEEecccccCCCCc
Q ss_pred CcceEEe
Q 044070 278 LAHCVVE 284 (903)
Q Consensus 278 ~~~~li~ 284 (903)
.|-...+
T Consensus 340 vcv~f~~ 346 (346)
T COG2706 340 VCVKFLA 346 (346)
T ss_pred EEEEEcC
No 33
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=84.75 E-value=61 Score=34.79 Aligned_cols=148 Identities=10% Similarity=-0.006 Sum_probs=76.4
Q ss_pred ECCCeEEEEEeeCCeEEEEEeCCceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccC-ceeEEe-
Q 044070 435 VEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGI-SLEKLL- 512 (903)
Q Consensus 435 l~~~~lFvgS~~gds~L~~~~~~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi-~~~~~~- 512 (903)
..++.|++|.+.| =+++.+ ++..-...+....||..+.+.+. ...+++.+| |.|.+..-.- ......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~--~~~~~~~~i~~~~~I~ql~vl~~----~~~llvLsd----~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDL--SDPSKPTRILKLSSITQLSVLPE----LNLLLVLSD----GQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCC-EEEEEe--cCCccceeEeecceEEEEEEecc----cCEEEEEcC----CccEEEEchhhccccccc
Confidence 3578899997766 334444 11122233444445888888763 346788876 6665443111 000000
Q ss_pred -----e---cCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEeCCc---c-ccccCcCCccCCCCeEEEEeeCCC
Q 044070 513 -----R---TAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLN---F-TDVTDSVGFRPDVCTLACGLVADG 580 (903)
Q Consensus 513 -----~---~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~~~~---~-~e~~~~~~f~~~~~Tl~a~~~~~~ 580 (903)
. .....+..+++=.+..........+|++.....=.+|+.... + .+.. .|.+.+.-..+..+ ++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~k---e~~lp~~~~~i~~~-~~ 149 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLK---EISLPDPPSSIAFL-GN 149 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeE---EEEcCCCcEEEEEe-CC
Confidence 0 000122333333333111223456777777775557777543 2 2323 34444443333333 66
Q ss_pred eEEEEEcCcEEEEccCc
Q 044070 581 LLVQIHQNAVRLCMPTM 597 (903)
Q Consensus 581 ~ivQVT~~~irl~~~~~ 597 (903)
.++=.+.++..+++.+.
T Consensus 150 ~i~v~~~~~f~~idl~~ 166 (275)
T PF00780_consen 150 KICVGTSKGFYLIDLNT 166 (275)
T ss_pred EEEEEeCCceEEEecCC
Confidence 77777789999988764
No 34
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.92 E-value=91 Score=36.16 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=43.5
Q ss_pred eeecceeeEEEEEEeC-CCceEEEecCCCeEEEEeCCceEEEEeeecCCcccCCCCC
Q 044070 831 RRIGITPVFLVPLSDS-LDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCS 886 (903)
Q Consensus 831 ~~lG~~pv~l~~~~~~-~~~~v~~~~~~p~li~~~~~~l~~~~l~~~~~~~~~~f~s 886 (903)
--||-..+.+..++.. ..+.|+++|+|...+...+|.+++..=---.-.++++|..
T Consensus 235 ~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~ 291 (418)
T PF14727_consen 235 FNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCPYRV 291 (418)
T ss_pred EECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEEEEe
Confidence 3599999999888753 6778999999999999999988875433123466778887
No 35
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=83.88 E-value=17 Score=40.27 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=64.8
Q ss_pred cCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeC-CCcEEEEEEeCCCcceEeeEE
Q 044070 63 KETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISD-SGKLSFLAFCNEMHRFFPVAQ 141 (903)
Q Consensus 63 k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~td-s~~l~iL~~d~~~~~f~tv~~ 141 (903)
.++.|.+|.+..+|+|+.+...+.-|....+.. .| ..++|.++.. ++.+.+..++ +..++..+..
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~----------sp---d~~~lyv~~~~~~~i~~~~~~-~~g~l~~~~~ 75 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVI----------SP---DKRHLYVGVRPEFRVLSYRIA-DDGALTFAAE 75 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEE----------CC---CCCEEEEEECCCCcEEEEEEC-CCCceEEeee
Confidence 468899999976788888877766555554432 12 4467777654 5666666665 3444543333
Q ss_pred EEecCCCcccccCCcEEEECCCCCeeEEeec-cccEEEEEeec
Q 044070 142 VHLSNPGNSRHQLGRMLAVDSSGCLIAVSAY-EDRLGLFSLSM 183 (903)
Q Consensus 142 ~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~-e~~l~v~pl~~ 183 (903)
.+.. + ...++++||++|.+.++.+ ++.+.+|.++.
T Consensus 76 ~~~~--~-----~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 76 SPLP--G-----SPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred ecCC--C-----CceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 3222 1 1348999999999988876 66778887753
No 36
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=83.25 E-value=79 Score=34.96 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=43.1
Q ss_pred ceEEEEEec-CCeEEEEEccCCCC-eeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEec-CCcEEEEEecCC
Q 044070 705 GYTFVIGTH-RPSVEVLSFVPKEG-LRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLR-NGMLLRFEWPPD 781 (903)
Q Consensus 705 ~~~l~vg~~-d~~v~i~sl~~~~~-l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~-~G~l~~~~~~~~ 781 (903)
..+++|+.+ +++|.+|.++.... ++.+. .... + ..|+.+.+.. +..+|+++-+ +|.+..|+++..
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~--~~~~----~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEG--HQPT----E-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeE--EEec----c-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCC
Confidence 458888876 88999999976532 32222 1111 1 1456665443 4567787765 899999999876
Q ss_pred CC
Q 044070 782 SN 783 (903)
Q Consensus 782 ~~ 783 (903)
+|
T Consensus 307 ~g 308 (330)
T PRK11028 307 TG 308 (330)
T ss_pred CC
Confidence 65
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.24 E-value=32 Score=41.65 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=43.1
Q ss_pred EEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEee
Q 044070 655 EIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASG 734 (903)
Q Consensus 655 ~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~ 734 (903)
+|.+....+++.+|.|+++++. ..+||||.-|++|.||.++.+++...+.-.
T Consensus 498 sl~~~rtLel~ddvL~v~~Spd----------------------------gk~LaVsLLdnTVkVyflDtlKFflsLYGH 549 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPD----------------------------GKLLAVSLLDNTVKVYFLDTLKFFLSLYGH 549 (888)
T ss_pred eeccceEEeccccEEEEEEcCC----------------------------CcEEEEEeccCeEEEEEecceeeeeeeccc
Confidence 3555677789999999999874 569999999999999999988765444444
Q ss_pred eee
Q 044070 735 SIV 737 (903)
Q Consensus 735 ~l~ 737 (903)
+++
T Consensus 550 kLP 552 (888)
T KOG0306|consen 550 KLP 552 (888)
T ss_pred ccc
Confidence 443
No 38
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=82.92 E-value=1.4e+02 Score=37.66 Aligned_cols=178 Identities=13% Similarity=0.161 Sum_probs=97.2
Q ss_pred CCeEEEEEeeCCeEEEEEeCCceEEee---eecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEee
Q 044070 437 GRFLSAFVEMGDGMVLKEENGRLVYTS---PIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLR 513 (903)
Q Consensus 437 ~~~lFvgS~~gds~L~~~~~~~~~~~~---~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~ 513 (903)
...+|++...||+ |+|+..+.++.++ ...-|=|.-+.+++...- ...|++.+.|.+ ..+..++....+..
T Consensus 451 ~~Tif~S~i~g~~-lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~-n~sqVvvA~~~~-----~l~y~~i~~~~l~e 523 (1096)
T KOG1897|consen 451 EQTIFCSTINGNQ-LVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSA-NASQVVVAGGGL-----ALFYLEIEDGGLRE 523 (1096)
T ss_pred CceEEEEccCCce-EEEEecccEEEEcchhhhhcccCCCceEEEEEee-cceEEEEecCcc-----EEEEEEeeccceee
Confidence 4567888888887 9999887777764 456788888888775431 234777776532 22322222211100
Q ss_pred cCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEeCCccccccCcCCccCCCCeEEEEeeCC-CeEEEEEcCcEEE
Q 044070 514 TAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVAD-GLLVQIHQNAVRL 592 (903)
Q Consensus 514 ~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~~~-~~ivQVT~~~irl 592 (903)
.+ +. -|..+-.-|- +..+.|. .+ ..+-+++|.+.+ .+++=..|+.+.+
T Consensus 524 ~~------~~------------------~~e~evaCLD----isp~~d~-~~--~s~~~aVG~Ws~~~~~l~~~pd~~~~ 572 (1096)
T KOG1897|consen 524 VS------HK------------------EFEYEVACLD----ISPLGDA-PN--KSRLLAVGLWSDISMILTFLPDLILI 572 (1096)
T ss_pred ee------eh------------------eecceeEEEe----cccCCCC-CC--cceEEEEEeecceEEEEEECCCccee
Confidence 00 00 0111112221 1222221 11 234677777755 3466666666666
Q ss_pred EccCcccccCCCCCCCCeeeeEecCCeeEEEEEecC--CEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeE
Q 044070 593 CMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAH--NMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSC 670 (903)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~~--~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eisc 670 (903)
+..... .+.-| +.|....+.+ .++++++.+|.++||..+ .++..+.+.++..++.++..
T Consensus 573 ~~~~l~-------------~~~iP--RSIl~~~~e~d~~yLlvalgdG~l~~fv~d----~~tg~lsd~Kk~~lGt~P~~ 633 (1096)
T KOG1897|consen 573 THEQLS-------------GEIIP--RSILLTTFEGDIHYLLVALGDGALLYFVLD----INTGQLSDRKKVTLGTQPIS 633 (1096)
T ss_pred eeeccC-------------CCccc--hheeeEEeeccceEEEEEcCCceEEEEEEE----cccceEccccccccCCCCcE
Confidence 543221 01112 2465555554 688999999999998554 22446776677777776654
Q ss_pred E
Q 044070 671 I 671 (903)
Q Consensus 671 l 671 (903)
|
T Consensus 634 L 634 (1096)
T KOG1897|consen 634 L 634 (1096)
T ss_pred E
Confidence 4
No 39
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=82.55 E-value=35 Score=37.37 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=49.5
Q ss_pred cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccC
Q 044070 663 RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTM 742 (903)
Q Consensus 663 ~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~ 742 (903)
....+|+|+++... ...||..+.|++|+||++++.+. ..... ++.++
T Consensus 84 gH~~~vt~~~FsSd----------------------------GK~lat~~~Dr~Ir~w~~~DF~~---~eHr~--~R~nv 130 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSD----------------------------GKKLATISGDRSIRLWDVRDFEN---KEHRC--IRQNV 130 (420)
T ss_pred ccCCceeeeEEcCC----------------------------CceeEEEeCCceEEEEecchhhh---hhhhH--hhccc
Confidence 34689999999763 46899999999999999987431 11000 12233
Q ss_pred CCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 743 GTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 743 ~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
+.+ .|.-+.+.+--+..++.-.+...|..|.++.
T Consensus 131 e~d----hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 131 EYD----HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCC----CceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 332 4555555543333344444555677799864
No 40
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=81.62 E-value=82 Score=34.02 Aligned_cols=97 Identities=10% Similarity=0.073 Sum_probs=57.0
Q ss_pred CcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccC-
Q 044070 588 NAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRL- 664 (903)
Q Consensus 588 ~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l- 664 (903)
..+|+.+.... ....+......-+...+++ +.||+=...+.+|...... |..++.. ....
T Consensus 85 ~~lrlWDl~~g----------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-----g~ck~t~--~~~~~ 147 (315)
T KOG0279|consen 85 GTLRLWDLATG----------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-----GVCKYTI--HEDSH 147 (315)
T ss_pred ceEEEEEecCC----------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-----ccEEEEE--ecCCC
Confidence 45677766542 1334444333345555555 4577666666666644211 1112221 1122
Q ss_pred CCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCC
Q 044070 665 QSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEG 727 (903)
Q Consensus 665 ~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~ 727 (903)
..=|+|+.+.+.. ...+++-+.||++|++|+|...+.
T Consensus 148 ~~WVscvrfsP~~--------------------------~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 148 REWVSCVRFSPNE--------------------------SNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred cCcEEEEEEcCCC--------------------------CCcEEEEccCCceEEEEccCCcch
Confidence 4568999998742 157899999999999999987553
No 41
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=80.32 E-value=4.1 Score=31.70 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=31.1
Q ss_pred eeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEcc
Q 044070 659 MQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFV 723 (903)
Q Consensus 659 ~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~ 723 (903)
+..+.+..+|.|++.++. -+++|+|+.+|.|.||.+.
T Consensus 5 ~~~k~l~~~v~~~~w~P~----------------------------mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 5 LGEKNLPSRVSCMSWCPT----------------------------MDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred ecccCCCCcEEEEEECCC----------------------------CCEEEEEECCCeEEEEECC
Confidence 456677888999999874 4699999999999999984
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.37 E-value=45 Score=39.15 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=67.5
Q ss_pred eEEEEEec-CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCC
Q 044070 620 SISLGAVA-HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPAL 698 (903)
Q Consensus 620 ~I~~As~~-~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~ 698 (903)
.|.+++++ +...+++.++...+.+-..+ .+ +..+.. ......|+++++...
T Consensus 248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~---~~--~~~~~l-~~hs~~is~~~f~~d---------------------- 299 (456)
T KOG0266|consen 248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVR---TG--ECVRKL-KGHSDGISGLAFSPD---------------------- 299 (456)
T ss_pred ceEEEEecCCCCEEEEecCCCcEEEEecc---CC--eEEEee-eccCCceEEEEECCC----------------------
Confidence 46666666 33455555554444443331 22 343322 233568899988763
Q ss_pred CCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec--CccEEEEEecCCcEEEE
Q 044070 699 PAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA--DQFYVLAGLRNGMLLRF 776 (903)
Q Consensus 699 ~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~--~~~~L~vgl~~G~l~~~ 776 (903)
..+|+++++|+.|+||++.....+ +. ..+ .+.+ -+..+..+.+ ...||+++..|+.+..|
T Consensus 300 ------~~~l~s~s~d~~i~vwd~~~~~~~--~~-~~~-----~~~~----~~~~~~~~~fsp~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 300 ------GNLLVSASYDGTIRVWDLETGSKL--CL-KLL-----SGAE----NSAPVTSVQFSPNGKYLLSASLDRTLKLW 361 (456)
T ss_pred ------CCEEEEcCCCccEEEEECCCCcee--ee-ecc-----cCCC----CCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence 468888999999999998765522 10 000 0111 1111222333 47899999999999999
Q ss_pred EecC
Q 044070 777 EWPP 780 (903)
Q Consensus 777 ~~~~ 780 (903)
++..
T Consensus 362 ~l~~ 365 (456)
T KOG0266|consen 362 DLRS 365 (456)
T ss_pred EccC
Confidence 8863
No 43
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=79.31 E-value=1.1e+02 Score=33.93 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=84.7
Q ss_pred EEEEecCCceeEEEEEEecCCC--cCe-EEEEcC-----------CEEEEEEecCC----CcEEEEEEEEeccceeEeee
Q 044070 34 AKCVLKGSVVLQVAHGHLRSPT--SND-VVFGKE-----------TSIELVIIGED----GIVQSVCEQAVFGTIKDLAV 95 (903)
Q Consensus 34 ~~tl~~pt~V~~sl~g~f~~~~--~~~-LVv~k~-----------~~LeIy~~~~~----g~L~~v~~~~lfg~I~~i~~ 95 (903)
...+.+--.+......+|.... ..+ +||... .+|-+|++.+. .+|+++++.+.-|.|.+|+.
T Consensus 17 ~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~ 96 (321)
T PF03178_consen 17 SFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICS 96 (321)
T ss_dssp EEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEE
T ss_pred EEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhh
Confidence 3456667777778888887653 344 444322 57999999874 58999999999999999998
Q ss_pred eeccccccccCCCCCCccEEEEEeCCCcEEEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeecccc
Q 044070 96 VPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDR 175 (903)
Q Consensus 96 ~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~ 175 (903)
+. +.|+++. ..++.+.+|+.+. ++.........- ....++..+..++++-.-+-
T Consensus 97 ~~---------------~~lv~~~-g~~l~v~~l~~~~-~l~~~~~~~~~~---------~i~sl~~~~~~I~vgD~~~s 150 (321)
T PF03178_consen 97 FN---------------GRLVVAV-GNKLYVYDLDNSK-TLLKKAFYDSPF---------YITSLSVFKNYILVGDAMKS 150 (321)
T ss_dssp ET---------------TEEEEEE-TTEEEEEEEETTS-SEEEEEEE-BSS---------SEEEEEEETTEEEEEESSSS
T ss_pred hC---------------CEEEEee-cCEEEEEEccCcc-cchhhheecceE---------EEEEEeccccEEEEEEcccC
Confidence 83 5666655 5999999999876 455543322211 24455555668888877777
Q ss_pred EEEEEeec
Q 044070 176 LGLFSLSM 183 (903)
Q Consensus 176 l~v~pl~~ 183 (903)
+.++-++.
T Consensus 151 v~~~~~~~ 158 (321)
T PF03178_consen 151 VSLLRYDE 158 (321)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEc
Confidence 88887764
No 44
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=79.02 E-value=1.7e+02 Score=35.95 Aligned_cols=100 Identities=13% Similarity=0.209 Sum_probs=60.2
Q ss_pred CcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCCCcEEEEEEeCCCc
Q 044070 55 TSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMH 134 (903)
Q Consensus 55 ~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d~~~~ 134 (903)
+-+.|+.-=+|+|.+|.+..+..-.+.++ ..+.|+.++.- |. .-+|+.+-+.|+..++.+- .
T Consensus 25 dG~sviSPvGNrvsv~dLknN~S~Tl~~e--~~~NI~~ialS----------p~---g~lllavdE~g~~~lvs~~---~ 86 (893)
T KOG0291|consen 25 DGNSVISPVGNRVSVFDLKNNKSYTLPLE--TRYNITRIALS----------PD---GTLLLAVDERGRALLVSLL---S 86 (893)
T ss_pred CCCEEEeccCCEEEEEEccCCcceeEEee--cCCceEEEEeC----------CC---ceEEEEEcCCCcEEEEecc---c
Confidence 44667777899999999976543333333 23466665532 22 1255555556777666543 2
Q ss_pred ceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEe
Q 044070 135 RFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSL 181 (903)
Q Consensus 135 ~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl 181 (903)
+++ +|...|.++- .-+...|+||.+|++. ++.+.|+-.
T Consensus 87 r~V-lh~f~fk~~v-------~~i~fSPng~~fav~~-gn~lqiw~~ 124 (893)
T KOG0291|consen 87 RSV-LHRFNFKRGV-------GAIKFSPNGKFFAVGC-GNLLQIWHA 124 (893)
T ss_pred cee-eEEEeecCcc-------ceEEECCCCcEEEEEe-cceeEEEec
Confidence 233 2455554431 1367789999999986 676777644
No 45
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=78.38 E-value=28 Score=38.01 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=36.0
Q ss_pred EEEECCCCCeeEEeeccccEEEEEeecCCCCccccccccCCCCccccCcccceeeeccccccEEEEEEeeC
Q 044070 157 MLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFIST 227 (903)
Q Consensus 157 ~l~VDP~~R~ial~~~e~~l~v~pl~~~~~~~~~~~~~~sP~~~e~~~s~~~~~~~~~~~~~i~dm~FL~~ 227 (903)
..+|.|+||.+|++++---.+|+..-...++ ++ .+.+|.|++.--..-|+..+|=..
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG-----~f---------qev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG-----TF---------QEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCc-----ch---------hhhhhhheeccchhheeeeeeCCC
Confidence 6799999999999999888888765322211 11 123355544222345777777665
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=76.21 E-value=1.7e+02 Score=34.44 Aligned_cols=73 Identities=12% Similarity=0.207 Sum_probs=50.6
Q ss_pred cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccC
Q 044070 663 RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTM 742 (903)
Q Consensus 663 ~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~ 742 (903)
.+...|+|+++.+. +..++.|.+|++|+||++...+.+..+.
T Consensus 244 gH~~~v~~~~f~p~----------------------------g~~i~Sgs~D~tvriWd~~~~~~~~~l~---------- 285 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPD----------------------------GNLLVSGSDDGTVRIWDVRTGECVRKLK---------- 285 (456)
T ss_pred CCCCceEEEEecCC----------------------------CCEEEEecCCCcEEEEeccCCeEEEeee----------
Confidence 55677899998763 4689999999999999998655433332
Q ss_pred CCCCCCCCcceeEEeec--CccEEEEEecCCcEEEEEec
Q 044070 743 GTAISGCIPQDVRLVLA--DQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 743 ~~~~s~~~p~si~l~~~--~~~~L~vgl~~G~l~~~~~~ 779 (903)
+. -..|..+.+ +..+|+.+-.||.+..|.+.
T Consensus 286 -~h-----s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 286 -GH-----SDGISGLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred -cc-----CCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence 11 012222233 46778888889999988875
No 47
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=76.14 E-value=1.4e+02 Score=33.66 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=39.8
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCC-ccEEEEceeccCCCCcceEEEECCCeEEEEEeeCCeEEEEEeCCceEEeeeecccc
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSD-GHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIA 469 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~-~~~v~~~~~~~~~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~~~~~~~~~l~N~g 469 (903)
++.+++...+|.++.+.... |+ .++.. +.. ....+. ..+++.+|+++. |+.++.++.++=+++.+..--+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~t-G~~~W~~~----~~~-~~~~~p-~v~~~~v~v~~~--~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAET-GKRLWRVD----LDE-RLSGGV-GADGGLVFVGTE--KGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccC-CcEeeeec----CCC-Ccccce-EEcCCEEEEEcC--CCEEEEEECCCCcEeeeeccCc
Confidence 56788999999998887643 32 12222 111 111222 346888999874 5678887642223344443333
Q ss_pred cc
Q 044070 470 PI 471 (903)
Q Consensus 470 PI 471 (903)
++
T Consensus 136 ~~ 137 (377)
T TIGR03300 136 EV 137 (377)
T ss_pred ee
Confidence 33
No 48
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=75.83 E-value=64 Score=37.04 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=70.5
Q ss_pred EEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCcc
Q 044070 623 LGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGV 702 (903)
Q Consensus 623 ~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 702 (903)
.+++++.|++.+......+.+-... .+...+...-+...|.||...+.
T Consensus 45 l~~l~~~yllsaq~~rp~l~vw~i~------k~~~~~q~~v~Pg~v~al~s~n~-------------------------- 92 (476)
T KOG0646|consen 45 LTALNNEYLLSAQLKRPLLHVWEIL------KKDQVVQYIVLPGPVHALASSNL-------------------------- 92 (476)
T ss_pred hhhhchhheeeecccCccccccccC------chhhhhhhcccccceeeeecCCC--------------------------
Confidence 4555677888887666655442220 11122345566788899987652
Q ss_pred ccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec--CccEEEEEecCCcEEEEEec
Q 044070 703 IIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA--DQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 703 ~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~--~~~~L~vgl~~G~l~~~~~~ 779 (903)
..||+.|+-.+.|++|.+....+|..++- .-.+|.-..+ +..+++-|-.||.++.|.+.
T Consensus 93 --G~~l~ag~i~g~lYlWelssG~LL~v~~a----------------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 93 --GYFLLAGTISGNLYLWELSSGILLNVLSA----------------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred --ceEEEeecccCcEEEEEeccccHHHHHHh----------------hccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 57998888999999999987776543311 1133333333 57789999999999999974
No 49
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=74.62 E-value=7 Score=28.16 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=25.4
Q ss_pred cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEE
Q 044070 663 RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLS 721 (903)
Q Consensus 663 ~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~s 721 (903)
.....|.||++.+. ..+++.|..|++|++|+
T Consensus 9 ~h~~~i~~i~~~~~----------------------------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPD----------------------------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETT----------------------------SSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecc----------------------------cccceeeCCCCEEEEEC
Confidence 34578899998773 46999999999999985
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=74.41 E-value=1.8e+02 Score=34.10 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=107.1
Q ss_pred CeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEeCCccccccCcCC
Q 044070 485 DQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVG 564 (903)
Q Consensus 485 ~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~~~~~~e~~~~~~ 564 (903)
..|+.++ -+|.+...-.|-+...-..= -..-.+|-.+.. .+.+.++-+++.+.=++..+.++ ..+....
T Consensus 333 ~~i~Sgs---yDG~I~~W~~~~g~~~~~~g---~~h~nqI~~~~~---~~~~~~~t~g~Dd~l~~~~~~~~--~~t~~~~ 401 (603)
T KOG0318|consen 333 KTIYSGS---YDGHINSWDSGSGTSDRLAG---KGHTNQIKGMAA---SESGELFTIGWDDTLRVISLKDN--GYTKSEV 401 (603)
T ss_pred CEEEeec---cCceEEEEecCCcccccccc---ccccceEEEEee---cCCCcEEEEecCCeEEEEecccC--cccccce
Confidence 3455554 35667666555554421100 011122222222 23356777788777777766321 1111112
Q ss_pred ccCCCCeEEEEeeCC-CeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEEecCCEEEEEEeCCcEEE
Q 044070 565 FRPDVCTLACGLVAD-GLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAVAHNMIIVSTSNPCFLF 642 (903)
Q Consensus 565 f~~~~~Tl~a~~~~~-~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~~~~~vvva~~~~~il~ 642 (903)
+.+..+-+.++...+ +.+|-++-++|.++..... ...... -....++.+-.++.++|--.++.+-.
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~------------~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv 469 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK------------VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV 469 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc------------ceeeccccccceEEEcCCCCEEEEecccceEEE
Confidence 455666666666655 4889999999999875432 223222 11223334444678888877777544
Q ss_pred EEeEEeccccceEEEE-eeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEE
Q 044070 643 ILGVRSLSVSHYEIYE-MQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLS 721 (903)
Q Consensus 643 ~~~~~~~~~g~~~L~~-~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~s 721 (903)
+... .+ +|.+ ....+...+|+|++..+. ..+||+|...+.+.+|+
T Consensus 470 ysl~----g~--~l~ee~~~~~h~a~iT~vaySpd----------------------------~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 470 YSLS----GD--ELKEEAKLLEHRAAITDVAYSPD----------------------------GAYLAAGDASRKVVLYD 515 (603)
T ss_pred EEec----CC--cccceeeeecccCCceEEEECCC----------------------------CcEEEEeccCCcEEEEE
Confidence 4322 11 3444 355677899999999873 46999999999999999
Q ss_pred ccCCC
Q 044070 722 FVPKE 726 (903)
Q Consensus 722 l~~~~ 726 (903)
....+
T Consensus 516 ~~s~~ 520 (603)
T KOG0318|consen 516 VASRE 520 (603)
T ss_pred cccCc
Confidence 87654
No 51
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=73.03 E-value=1.1e+02 Score=36.26 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=52.8
Q ss_pred eeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeee
Q 044070 659 MQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVL 738 (903)
Q Consensus 659 ~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~ 738 (903)
+.+.++..+|.|.+..+. ...+++||.||+|.+|..... +.... ++
T Consensus 253 vtsipL~s~v~~ca~sp~----------------------------E~kLvlGC~DgSiiLyD~~~~--~t~~~-ka--- 298 (545)
T PF11768_consen 253 VTSIPLPSQVICCARSPS----------------------------EDKLVLGCEDGSIILYDTTRG--VTLLA-KA--- 298 (545)
T ss_pred EEEEecCCcceEEecCcc----------------------------cceEEEEecCCeEEEEEcCCC--eeeee-ee---
Confidence 467788889998888663 568999999999999986532 21111 11
Q ss_pred cccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 739 TNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 739 ~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
.++|..+.-. -++..++||-..|.+-.|.+.
T Consensus 299 ---------~~~P~~iaWH-p~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 299 ---------EFIPTLIAWH-PDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ---------cccceEEEEc-CCCcEEEEEcCCceEEEEEee
Confidence 0344333222 245678899999999999864
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.01 E-value=14 Score=44.94 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=73.2
Q ss_pred eEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCC
Q 044070 620 SISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALP 699 (903)
Q Consensus 620 ~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~ 699 (903)
.|...+...++.+|+.+=..-+-+=... .. .-+..+...+=|+|+++.+..
T Consensus 371 DILDlSWSKn~fLLSSSMDKTVRLWh~~--~~-----~CL~~F~HndfVTcVaFnPvD---------------------- 421 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMDKTVRLWHPG--RK-----ECLKVFSHNDFVTCVAFNPVD---------------------- 421 (712)
T ss_pred hheecccccCCeeEeccccccEEeecCC--Cc-----ceeeEEecCCeeEEEEecccC----------------------
Confidence 4888888888877776533333221110 01 113556667789999998864
Q ss_pred CccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 700 AGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 700 ~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..|++-|+-|+.++||++++.+... |.+. . .+-.++++.+- +.+.+||+-+|....|...
T Consensus 422 -----DryFiSGSLD~KvRiWsI~d~~Vv~--------W~Dl-~-----~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 422 -----DRYFISGSLDGKVRLWSISDKKVVD--------WNDL-R-----DLITAVCYSPD-GKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred -----CCcEeecccccceEEeecCcCeeEe--------ehhh-h-----hhheeEEeccC-CceEEEEEeccEEEEEEcc
Confidence 4688889999999999998866321 2110 0 12245555544 6789999999999999865
Q ss_pred C
Q 044070 780 P 780 (903)
Q Consensus 780 ~ 780 (903)
.
T Consensus 482 ~ 482 (712)
T KOG0283|consen 482 G 482 (712)
T ss_pred C
Confidence 3
No 53
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=71.94 E-value=2.3e+02 Score=35.57 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=49.2
Q ss_pred EEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCC
Q 044070 621 ISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPAL 698 (903)
Q Consensus 621 I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~ 698 (903)
|.+++++ +.+++.+.++-.+..+.... .+ .+..-+.++.+|.||++.+-
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D---~s----~~~~lrgh~apVl~l~~~p~---------------------- 149 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDD---SS----QEKVLRGHDAPVLQLSYDPK---------------------- 149 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccc---cc----hheeecccCCceeeeeEcCC----------------------
Confidence 5555555 44777776565565553331 11 22344577899999999762
Q ss_pred CCccccceEEEEEecCCeEEEEEccCCCC
Q 044070 699 PAGVIIGYTFVIGTHRPSVEVLSFVPKEG 727 (903)
Q Consensus 699 ~~~~~~~~~l~vg~~d~~v~i~sl~~~~~ 727 (903)
..+|||..-||+|+||++.+...
T Consensus 150 ------~~fLAvss~dG~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 150 ------GNFLAVSSCDGKVQIWDLQDGIL 172 (933)
T ss_pred ------CCEEEEEecCceEEEEEcccchh
Confidence 56999999999999999987543
No 54
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=71.93 E-value=1.2e+02 Score=37.10 Aligned_cols=109 Identities=11% Similarity=0.082 Sum_probs=62.0
Q ss_pred eEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEec-CC----------eeEEEEEe--cCCEEEEEEeC
Q 044070 571 TLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EH----------VSISLGAV--AHNMIIVSTSN 637 (903)
Q Consensus 571 Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~----------~~I~~As~--~~~~vvva~~~ 637 (903)
-|+||.+.+-.-++++|++-.+..+... +.+.-|+. .| .+|++.+. ++.+++-+-.+
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD----------~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSD----------RTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCC----------ceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 4556666555566666666655544221 23444542 22 23333333 46666666556
Q ss_pred CcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeE
Q 044070 638 PCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSV 717 (903)
Q Consensus 638 ~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v 717 (903)
+.|.+.... .| ++..+ -+...+.|..|+++.. +.+||+|..|++|
T Consensus 599 ~~I~iWDl~----~~--~~v~~-l~~Ht~ti~SlsFS~d----------------------------g~vLasgg~DnsV 643 (707)
T KOG0263|consen 599 GLIKIWDLA----NG--SLVKQ-LKGHTGTIYSLSFSRD----------------------------GNVLASGGADNSV 643 (707)
T ss_pred CcEEEEEcC----CC--cchhh-hhcccCceeEEEEecC----------------------------CCEEEecCCCCeE
Confidence 656554222 22 23222 2222677888888652 5799999999999
Q ss_pred EEEEccC
Q 044070 718 EVLSFVP 724 (903)
Q Consensus 718 ~i~sl~~ 724 (903)
++|++..
T Consensus 644 ~lWD~~~ 650 (707)
T KOG0263|consen 644 RLWDLTK 650 (707)
T ss_pred EEEEchh
Confidence 9998754
No 55
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=70.43 E-value=1.6e+02 Score=31.57 Aligned_cols=214 Identities=11% Similarity=0.074 Sum_probs=102.2
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEECC-CeEEEEEeeCCeEEEEEeCCceEEe-------
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEG-RFLSAFVEMGDGMVLKEENGRLVYT------- 462 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~~-~~lFvgS~~gds~L~~~~~~~~~~~------- 462 (903)
++++++++++| ||...+.....-.++. .....+.+..+.+ +.|++=+ |+.|+.+.=+.+...
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~------~~~~I~ql~vl~~~~~llvLs---d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL------KLSSITQLSVLPELNLLLVLS---DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe------ecceEEEEEEecccCEEEEEc---CCccEEEEchhhcccccccccc
Confidence 67899999999 8888872221111111 0111344555542 3333332 356655542211111
Q ss_pred --------eeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCc---e-eEEeecCCCCCCccEEEEeeec
Q 044070 463 --------SPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGIS---L-EKLLRTAPIYQGITGTWTVRMK 530 (903)
Q Consensus 463 --------~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~---~-~~~~~~~~~~~~v~~iWtl~~~ 530 (903)
..++....+.-|+.. ....+...|+++... .|.+++..-+ . .....+. .+..+..+=.+
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~-~~~~~~~~L~va~kk----~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--- 147 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVN-GGHEGSRRLCVAVKK----KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--- 147 (275)
T ss_pred ccccccccccccccCCeeEEeec-cccccceEEEEEECC----EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---
Confidence 144455555555511 111233345554443 6766666542 2 3344443 44555555222
Q ss_pred CCCCcceEEEEEecCceEEEEeC-CccccccCc--CC--c---cCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccC
Q 044070 531 VSDPYHSFLVLSFVEETRVLRVG-LNFTDVTDS--VG--F---RPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSG 602 (903)
Q Consensus 531 ~~~~~~~~LvlS~~~~T~vl~~~-~~~~e~~~~--~~--f---~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~ 602 (903)
+..+++++.++=.++.+. .+.+++-+. .. + ..+.+.+.+-.+.++-++=+..+.-..++..+..
T Consensus 148 -----~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~--- 219 (275)
T PF00780_consen 148 -----GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEP--- 219 (275)
T ss_pred -----CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCc---
Confidence 356777776665556554 233333211 01 1 0112234444454444444444444445443321
Q ss_pred CCCCCCCeeeeEecCCeeEEEEEecCCEEEEEEeCC
Q 044070 603 GIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNP 638 (903)
Q Consensus 603 ~~~~~~~~~~~w~~~~~~I~~As~~~~~vvva~~~~ 638 (903)
.+....+|.. ...++++..+||++..++.
T Consensus 220 ----~r~~~i~W~~---~p~~~~~~~pyli~~~~~~ 248 (275)
T PF00780_consen 220 ----SRKSTIQWSS---APQSVAYSSPYLIAFSSNS 248 (275)
T ss_pred ----CcccEEEcCC---chhEEEEECCEEEEECCCE
Confidence 1234668862 4567777889998876543
No 56
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.89 E-value=2.1e+02 Score=32.42 Aligned_cols=206 Identities=14% Similarity=0.039 Sum_probs=104.7
Q ss_pred CCCeEEEEEeeCCeEEEEEeCCc--eEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEee
Q 044070 436 EGRFLSAFVEMGDGMVLKEENGR--LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLR 513 (903)
Q Consensus 436 ~~~~lFvgS~~gds~L~~~~~~~--~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~ 513 (903)
.++.|..+-..|+-+++..+... -+.+-.+.-.+++.+|.-.+ ..+.|+|.-|.-+ |..-++..
T Consensus 114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~----~~p~Iva~GGke~----------~n~lkiwd 179 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTD----TDPYIVATGGKEN----------INELKIWD 179 (412)
T ss_pred cCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCC----CCCceEecCchhc----------ccceeeee
Confidence 36777777777777777766221 11222333335555554332 2356777666543 22223333
Q ss_pred cCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEeCCccccccCcCCccCC--CCeEEEEeeCCCeEEEEEcCcEE
Q 044070 514 TAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPD--VCTLACGLVADGLLVQIHQNAVR 591 (903)
Q Consensus 514 ~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~~~~~~e~~~~~~f~~~--~~Tl~a~~~~~~~ivQVT~~~ir 591 (903)
+.+.+++|+-+.-..+ +|= -++.|+-. +. .|... ..+++.++= -..+|
T Consensus 180 ----le~~~qiw~aKNvpnD----~L~----LrVPvW~t--------di-~Fl~g~~~~~fat~T~---------~hqvR 229 (412)
T KOG3881|consen 180 ----LEQSKQIWSAKNVPND----RLG----LRVPVWIT--------DI-RFLEGSPNYKFATITR---------YHQVR 229 (412)
T ss_pred ----cccceeeeeccCCCCc----ccc----ceeeeeec--------cc-eecCCCCCceEEEEec---------ceeEE
Confidence 3456999997754222 221 13344422 22 44433 345554442 24578
Q ss_pred EEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCcee
Q 044070 592 LCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELS 669 (903)
Q Consensus 592 l~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eis 669 (903)
+++...+ ++.+.+.......|++-+.. +++|.++-.-+++-.|... . .++.-.....+.+.|+
T Consensus 230 ~YDt~~q---------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r----~--~kl~g~~~kg~tGsir 294 (412)
T KOG3881|consen 230 LYDTRHQ---------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR----G--GKLLGCGLKGITGSIR 294 (412)
T ss_pred EecCccc---------CcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc----C--ceeeccccCCccCCcc
Confidence 8887654 34555554322335444433 4455555444555444211 1 1222112234455565
Q ss_pred EEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCe
Q 044070 670 CISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGL 728 (903)
Q Consensus 670 cl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l 728 (903)
.|...+. ..++|.+.-|.-|+|+.++...++
T Consensus 295 sih~hp~----------------------------~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 295 SIHCHPT----------------------------HPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred eEEEcCC----------------------------CceEEeeccceeEEEeecccchhh
Confidence 5555431 358888888999999998764443
No 57
>PTZ00421 coronin; Provisional
Probab=67.86 E-value=91 Score=37.08 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=38.6
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..+|+.|.+|++|+||++...+.+..+. ... ....++.+.. +..+|..|-.||.+..|.+.
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg~~~~~l~-----------~h~--~~V~sla~sp-dG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERGKAVEVIK-----------CHS--DQITSLEWNL-DGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCCeEEEEEc-----------CCC--CceEEEEEEC-CCCEEEEecCCCEEEEEECC
Confidence 3589999999999999987654322111 000 0113444332 35678889999999887764
No 58
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=67.40 E-value=3.2e+02 Score=34.01 Aligned_cols=73 Identities=7% Similarity=0.087 Sum_probs=51.1
Q ss_pred eeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEE-eeeccCC-CceeEEEccCCCCcccCCCCCccccCCCC
Q 044070 619 VSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYE-MQHMRLQ-SELSCISIPQKHPERRKSSSPISLVSNSS 694 (903)
Q Consensus 619 ~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~-~~~~~l~-~eiscl~i~~~~~g~~~~~~~~~~~~~~~ 694 (903)
.+|+++--. =+-|+|.+.+|+++.|..- ..+ +-.+..+ +.|+.+++... |
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK---------~dkil~sFk~d~g~VtslSFrtD--G--------------- 256 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLK---------FDKILMSFKQDWGRVTSLSFRTD--G--------------- 256 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcc---------cCcEEEEEEccccceeEEEeccC--C---------------
Confidence 356655433 2466888899999987332 112 2344554 89999999763 2
Q ss_pred CCCCCCccccceEEEEEecCCeEEEEEccCCCC
Q 044070 695 VPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEG 727 (903)
Q Consensus 695 ~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~ 727 (903)
..++|+|+..|.|.+|.|++...
T Consensus 257 ----------~p~las~~~~G~m~~wDLe~kkl 279 (910)
T KOG1539|consen 257 ----------NPLLASGRSNGDMAFWDLEKKKL 279 (910)
T ss_pred ----------CeeEEeccCCceEEEEEcCCCee
Confidence 57999999999999999987653
No 59
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.34 E-value=28 Score=39.23 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.2
Q ss_pred ceEEEEEecCCeEEEEEccCCCCe
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGL 728 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l 728 (903)
..|+|+|+-||.|.||....++.+
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~ 316 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRL 316 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeee
Confidence 579999999999999988765543
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.51 E-value=62 Score=38.04 Aligned_cols=102 Identities=15% Similarity=0.244 Sum_probs=60.8
Q ss_pred CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceE
Q 044070 628 HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYT 707 (903)
Q Consensus 628 ~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (903)
.+.|+|++ +..+|+-.. .++ ++.+..... ++.|+++..... ..+
T Consensus 188 ~n~laVal--g~~vylW~~---~s~--~v~~l~~~~-~~~vtSv~ws~~----------------------------G~~ 231 (484)
T KOG0305|consen 188 ANVLAVAL--GQSVYLWSA---SSG--SVTELCSFG-EELVTSVKWSPD----------------------------GSH 231 (484)
T ss_pred CCeEEEEe--cceEEEEec---CCC--ceEEeEecC-CCceEEEEECCC----------------------------CCE
Confidence 34556665 556776332 133 333333333 788998887652 569
Q ss_pred EEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 708 FVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 708 l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
||||+.+|.|.||+....+.+..+.. .. .+ -+-...-....|..|.++|.++.+.+.-
T Consensus 232 LavG~~~g~v~iwD~~~~k~~~~~~~----------~h----~~-rvg~laW~~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 232 LAVGTSDGTVQIWDVKEQKKTRTLRG----------SH----AS-RVGSLAWNSSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred EEEeecCCeEEEEehhhccccccccC----------Cc----Cc-eeEEEeccCceEEEecCCCcEEEEEEec
Confidence 99999999999999876544322211 00 10 1111111255688899999998888753
No 61
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=65.38 E-value=1.5e+02 Score=31.67 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=40.2
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
..-|++|..+|.|+||.|..+.+.+. .++ +.+ ..-+|+.+. -+..+|..+..-|.++.+++-.
T Consensus 136 QteLis~dqsg~irvWDl~~~~c~~~----liP-----e~~---~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGENSCTHE----LIP-----EDD---TSIQSLTVM-PDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred cceEEeecCCCcEEEEEccCCccccc----cCC-----CCC---cceeeEEEc-CCCcEEEEecCCccEEEEEccC
Confidence 34678899999999999987544221 111 111 011344332 2467799999999999998753
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=64.54 E-value=66 Score=35.92 Aligned_cols=112 Identities=18% Similarity=0.243 Sum_probs=63.9
Q ss_pred CeeEEEEEecCCEEEEEEeC--CcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 618 HVSISLGAVAHNMIIVSTSN--PCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 618 ~~~I~~As~~~~~vvva~~~--~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
+.+|++++.+.+-.+||+.+ |.+..+... .+. ..+.++.++.-|.-..-+
T Consensus 106 KDSVt~~~FshdgtlLATGdmsG~v~v~~~s----tg~------~~~~~~~e~~dieWl~WH------------------ 157 (399)
T KOG0296|consen 106 KDSVTCCSFSHDGTLLATGDMSGKVLVFKVS----TGG------EQWKLDQEVEDIEWLKWH------------------ 157 (399)
T ss_pred CCceEEEEEccCceEEEecCCCccEEEEEcc----cCc------eEEEeecccCceEEEEec------------------
Confidence 35688888886666666654 556665543 221 223333344333222111
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEE
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLR 775 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~ 775 (903)
+ ..++|++|+.||++-.|+++.....+.++-+..+++ .|. .+|. .-.++.|..||.++.
T Consensus 158 ---p----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct--~G~----f~pd--------GKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 158 ---P----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT--CGE----FIPD--------GKRILTGYDDGTIIV 216 (399)
T ss_pred ---c----cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc--ccc----ccCC--------CceEEEEecCceEEE
Confidence 1 167999999999999999987543333332222211 111 2321 445889999999987
Q ss_pred EEe
Q 044070 776 FEW 778 (903)
Q Consensus 776 ~~~ 778 (903)
+..
T Consensus 217 Wn~ 219 (399)
T KOG0296|consen 217 WNP 219 (399)
T ss_pred Eec
Confidence 764
No 63
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=63.76 E-value=1.1e+02 Score=32.94 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=32.5
Q ss_pred cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEE
Q 044070 663 RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVL 731 (903)
Q Consensus 663 ~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~ 731 (903)
-.++||-|++.... ..+||.+++|.+|=||..+..+.++..
T Consensus 103 GHEnEVK~Vaws~s----------------------------G~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 103 GHENEVKCVAWSAS----------------------------GNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred ccccceeEEEEcCC----------------------------CCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 34789999998763 579999999999999999866555444
No 64
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.70 E-value=68 Score=35.21 Aligned_cols=115 Identities=19% Similarity=0.220 Sum_probs=71.9
Q ss_pred eEEEEEEEecCCceeEEEEEEecCCCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCC
Q 044070 30 IHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQV 109 (903)
Q Consensus 30 ~~~~~~tl~~pt~V~~sl~g~f~~~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~ 109 (903)
|.+++...+..+-..-||.++|..... .+.+|.||.+...-++..+..+ -|+|++++-.. .
T Consensus 34 ~~lF~~~aH~~sitavAVs~~~~aSGs------sDetI~IYDm~k~~qlg~ll~H--agsitaL~F~~-----------~ 94 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSGPYVASGS------SDETIHIYDMRKRKQLGILLSH--AGSITALKFYP-----------P 94 (362)
T ss_pred eccccccccccceeEEEecceeEeccC------CCCcEEEEeccchhhhcceecc--ccceEEEEecC-----------C
Confidence 445665666666666666666643222 3568999999877667777776 37888887542 2
Q ss_pred CCccEEEEEeCCCcEEEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccc
Q 044070 110 MGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYED 174 (903)
Q Consensus 110 ~~~D~Llv~tds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~ 174 (903)
..+..|+=+.|+|.+++. |.. .+..+....-.+ +. -..+++.|.++.+ ++.+.+
T Consensus 95 ~S~shLlS~sdDG~i~iw--~~~--~W~~~~slK~H~-~~-----Vt~lsiHPS~KLA-LsVg~D 148 (362)
T KOG0294|consen 95 LSKSHLLSGSDDGHIIIW--RVG--SWELLKSLKAHK-GQ-----VTDLSIHPSGKLA-LSVGGD 148 (362)
T ss_pred cchhheeeecCCCcEEEE--EcC--CeEEeeeecccc-cc-----cceeEecCCCceE-EEEcCC
Confidence 444589999999999875 433 355443221111 11 1369999999864 444433
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=63.53 E-value=4e+02 Score=33.72 Aligned_cols=73 Identities=11% Similarity=-0.039 Sum_probs=37.6
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEe
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEW 778 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~ 778 (903)
..++|+|.+|++|.||.......+.............+........-.++... -+..+|++|-.+|.+..+++
T Consensus 720 ~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws-~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 720 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR-GQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEc-CCCCeEEEecCCCcEEEEec
Confidence 46999999999999998653221110000000000000000000011233222 14578999999999998876
No 66
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=62.78 E-value=1.2e+02 Score=32.38 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=41.4
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecCC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPD 781 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~~ 781 (903)
..|+..|..||+++||.+..... |... ... ....++++. -.+..|++|..+|.+-.+.+...
T Consensus 95 grWMyTgseDgt~kIWdlR~~~~------qR~~-----~~~---spVn~vvlh-pnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRSLSC------QRNY-----QHN---SPVNTVVLH-PNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred CeEEEecCCCceEEEEeccCccc------chhc-----cCC---CCcceEEec-CCcceEEeecCCCcEEEEEccCC
Confidence 57999999999999999875332 1111 010 011344333 23667999999999999987643
No 67
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.28 E-value=19 Score=39.31 Aligned_cols=62 Identities=15% Similarity=0.279 Sum_probs=40.4
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEee-cCccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVL-ADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~-~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..|+|-|..|-+|+||.++....+..+...+ + .+ ..+.+.. +...+|+-|-.||.++.++..
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha--------g----si-taL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGILLSHA--------G----SI-TALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhcceeccc--------c----ce-EEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 5799999999999999998754443332110 0 01 2222221 124589999999999999854
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=62.22 E-value=1e+02 Score=38.94 Aligned_cols=62 Identities=10% Similarity=0.038 Sum_probs=40.8
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
..+|+.|..|++|++|++.....+..+.. .. ...++.+..-...+|.+|..||.+..|.+..
T Consensus 588 ~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~---------~~-----~v~~v~~~~~~g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 588 PTLLASGSDDGSVKLWSINQGVSIGTIKT---------KA-----NICCVQFPSESGRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEec---------CC-----CeEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 45899999999999999976543322210 00 1123333333467899999999999998753
No 69
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.13 E-value=3.1e+02 Score=35.16 Aligned_cols=147 Identities=13% Similarity=0.161 Sum_probs=79.5
Q ss_pred cCcEEEEccCcccccCCCCCCCCeeeeEec--CCeeEEEEEecC-CEE-EEE-EeCCcEEEEEeEEeccccceEEEEeee
Q 044070 587 QNAVRLCMPTMVAHSGGIPLSYPVCTSWFP--EHVSISLGAVAH-NMI-IVS-TSNPCFLFILGVRSLSVSHYEIYEMQH 661 (903)
Q Consensus 587 ~~~irl~~~~~~~~~~~~~~~~~~~~~w~~--~~~~I~~As~~~-~~v-vva-~~~~~il~~~~~~~~~~g~~~L~~~~~ 661 (903)
..+||++|--.. .+...+..|++ +-..|++++... +.- +|+ ..+|.| ++.+.++.... .-+....+
T Consensus 1230 DGsvRvyD~R~a-------~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I-~~~DlR~~~~e-~~~~iv~~ 1300 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMA-------PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI-QLLDLRMSSKE-TFLTIVAH 1300 (1387)
T ss_pred CCceEEeecccC-------CccccceeecccCCcccceeEEeecCCCcceeeeccCCeE-EEEecccCccc-ccceeeec
Confidence 456788763221 11234677876 223499999984 333 444 345544 44444321111 02333456
Q ss_pred ccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeeccc
Q 044070 662 MRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNT 741 (903)
Q Consensus 662 ~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~ 741 (903)
++-++..+||.+.+. +.++|.|.. +.|.||++..... ..+-.. +.-
T Consensus 1301 ~~yGs~lTal~VH~h----------------------------apiiAsGs~-q~ikIy~~~G~~l-~~~k~n----~~F 1346 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEH----------------------------APIIASGSA-QLIKIYSLSGEQL-NIIKYN----PGF 1346 (1387)
T ss_pred cccCccceeeeeccC----------------------------CCeeeecCc-ceEEEEecChhhh-cccccC----ccc
Confidence 666667888888652 578998888 9999999976442 111100 001
Q ss_pred CCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 742 MGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 742 ~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
++...+ .+.++.+.. -+..|-+|-.|-.+-.|.-.
T Consensus 1347 ~~q~~g--s~scL~FHP-~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1347 MGQRIG--SVSCLAFHP-HRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ccCcCC--Ccceeeecc-hhHhhhhccCCceEEEeecC
Confidence 111100 012222222 25668899888888888754
No 70
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=62.00 E-value=1.4e+02 Score=37.01 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=75.4
Q ss_pred cCeEEEEcCCEEEEEEecCCCcEE------E--------------EEEEEecc-ceeEeeeeeccccccccCCCCCCccE
Q 044070 56 SNDVVFGKETSIELVIIGEDGIVQ------S--------------VCEQAVFG-TIKDLAVVPWNKKFNAQNSQVMGKDL 114 (903)
Q Consensus 56 ~~~LVv~k~~~LeIy~~~~~g~L~------~--------------v~~~~lfg-~I~~i~~~~~~~~~~~~~p~~~~~D~ 114 (903)
.+.|++|..+.|+||+.+.-.++. . +...+ |- .|-.|.+- .-.+.++
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~-----------~lg~~EV 116 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVG-----------DLGGEEV 116 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEec-----------ccCCeeE
Confidence 566899999999999986321110 0 11111 11 23333221 3467899
Q ss_pred EEEEeCCCcEEEEEEeCCCcceEeeE--EEE-ec----CCCcccccCCc--EEEEC--CCCCeeEEeeccccEEEEEeec
Q 044070 115 LVVISDSGKLSFLAFCNEMHRFFPVA--QVH-LS----NPGNSRHQLGR--MLAVD--SSGCLIAVSAYEDRLGLFSLSM 183 (903)
Q Consensus 115 Llv~tds~~l~iL~~d~~~~~f~tv~--~~~-~~----~~g~~~~~~g~--~l~VD--P~~R~ial~~~e~~l~v~pl~~ 183 (903)
|++++|+|.+.+.+-+.=...+.... ... .. +|-........ =|++. ..+|.||+++-...+.||-|..
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 99999999997764431111111100 000 00 01011011111 25666 8999999999998899888764
Q ss_pred CCCCccccccccCCCCccccCcccceeeeccccccEEEEEEeeC
Q 044070 184 SSGSDIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFIST 227 (903)
Q Consensus 184 ~~~~~~~~~~~~sP~~~e~~~s~~~~~~~~~~~~~i~dm~FL~~ 227 (903)
.... ....| + +....||=.+.|++.
T Consensus 197 ~~~r-----~~~~~-s-------------~~~~hNIP~VSFl~~ 221 (717)
T PF08728_consen 197 VDER-----FYHVP-S-------------HQHSHNIPNVSFLDD 221 (717)
T ss_pred cccc-----ccccc-c-------------cccccCCCeeEeecC
Confidence 3110 01111 0 123567888999998
No 71
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=60.50 E-value=1.3e+02 Score=28.05 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=54.8
Q ss_pred CEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEE
Q 044070 629 NMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTF 708 (903)
Q Consensus 629 ~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 708 (903)
+.+++...+.+|-.|...+ -+ ........|++|.-.. ...+
T Consensus 16 ~eLlvGs~D~~IRvf~~~e-------~~---~Ei~e~~~v~~L~~~~-----------------------------~~~F 56 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE-------IV---AEITETDKVTSLCSLG-----------------------------GGRF 56 (111)
T ss_pred ceEEEecCCcEEEEEeCCc-------EE---EEEecccceEEEEEcC-----------------------------CCEE
Confidence 5677777777777764331 12 2334456677765433 2357
Q ss_pred EEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec---CccEEEEEecCCcE
Q 044070 709 VIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA---DQFYVLAGLRNGML 773 (903)
Q Consensus 709 ~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~---~~~~L~vgl~~G~l 773 (903)
+.|..+|+|-+|.-. ......- |...|.++....+ |.+.|++|=.||.+
T Consensus 57 ~Y~l~NGTVGvY~~~-~RlWRiK---------------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 57 AYALANGTVGVYDRS-QRLWRIK---------------SKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEEecCCEEEEEeCc-ceeeeec---------------cCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 789999999999531 1211111 1113567766666 46889999999986
No 72
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.21 E-value=1.6e+02 Score=33.50 Aligned_cols=153 Identities=10% Similarity=0.166 Sum_probs=82.3
Q ss_pred ccEEEEeeecCCCCcceEEEEEecCceE-EEEeCCccccccCcCCccCCCCeEEEEeeCC-C--eEEEEEcCcEEEEccC
Q 044070 521 ITGTWTVRMKVSDPYHSFLVLSFVEETR-VLRVGLNFTDVTDSVGFRPDVCTLACGLVAD-G--LLVQIHQNAVRLCMPT 596 (903)
Q Consensus 521 v~~iWtl~~~~~~~~~~~LvlS~~~~T~-vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~~~-~--~ivQVT~~~irl~~~~ 596 (903)
+.++|-+....+ ++|+++.+.+.-. ++. +|.-.+- +++..++-+..-.+.+ + .++-+-++++++.+..
T Consensus 354 ~~~v~dlait~D---gk~vl~v~~d~~i~l~~----~e~~~dr-~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 354 DPKVHDLAITYD---GKYVLLVTVDKKIRLYN----REARVDR-GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred cceeEEEEEcCC---CcEEEEEecccceeeec----hhhhhhh-ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 357888887643 4677777655433 332 2222222 5556666666555543 3 4778889999999866
Q ss_pred cccccCCCCCCCCeeeeEec--CCeeEEEEEec-CCEEEEEEe-CCcEEEE-EeEEeccccceEEEEeeeccCCCceeEE
Q 044070 597 MVAHSGGIPLSYPVCTSWFP--EHVSISLGAVA-HNMIIVSTS-NPCFLFI-LGVRSLSVSHYEIYEMQHMRLQSELSCI 671 (903)
Q Consensus 597 ~~~~~~~~~~~~~~~~~w~~--~~~~I~~As~~-~~~vvva~~-~~~il~~-~~~~~~~~g~~~L~~~~~~~l~~eiscl 671 (903)
.. ..+..... -+.-|+..+.. .+.-.|+.. ...-+|+ ... +| ++....+ -....|-|+
T Consensus 426 e~----------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~----sg--kll~~Ls-GHs~~vNcV 488 (519)
T KOG0293|consen 426 EN----------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI----SG--KLLAVLS-GHSKTVNCV 488 (519)
T ss_pred hh----------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc----CC--ceeEeec-CCcceeeEE
Confidence 43 12333332 22233333333 333333322 2234554 322 33 4443211 223557788
Q ss_pred EccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCC
Q 044070 672 SIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPK 725 (903)
Q Consensus 672 ~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~ 725 (903)
+-.+.. -..+|-|..||+|+||...+.
T Consensus 489 swNP~~---------------------------p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 489 SWNPAD---------------------------PEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ecCCCC---------------------------HHHhhccCCCCeEEEecCCcc
Confidence 766532 246777888999999987653
No 73
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=59.36 E-value=1.9e+02 Score=31.80 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=75.3
Q ss_pred eEEEEc--CCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCCCcEEEEEEeCCCcc
Q 044070 58 DVVFGK--ETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHR 135 (903)
Q Consensus 58 ~LVv~k--~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d~~~~~ 135 (903)
..|+++ +..+++|.+. +|++..|..+. |.|+.++=++ +.+ +=.|.|-|-.=++=.||.....
T Consensus 85 skVf~g~~Dk~~k~wDL~-S~Q~~~v~~Hd--~pvkt~~wv~-----------~~~--~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLA-SGQVSQVAAHD--APVKTCHWVP-----------GMN--YQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred ceEEeeccCCceEEEEcc-CCCeeeeeecc--cceeEEEEec-----------CCC--cceeEecccccceeecccCCCC
Confidence 445543 7889999985 55677777665 6777777663 233 4456678888888999977543
Q ss_pred eEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeecC-CCCccccccccCCCC
Q 044070 136 FFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMS-SGSDIIDKKICYPSE 199 (903)
Q Consensus 136 f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~~-~~~~~~~~~~~sP~~ 199 (903)
-+. ...+ |++--+.|-..-.++|+..++.++||-|..+ .+. .++.||+.
T Consensus 149 pv~--t~~L---------PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~----k~~~SpLk 198 (347)
T KOG0647|consen 149 PVA--TLQL---------PERVYAADVLYPMAVVATAERHIAVYNLENPPTEF----KRIESPLK 198 (347)
T ss_pred eee--eeec---------cceeeehhccCceeEEEecCCcEEEEEcCCCcchh----hhhcCccc
Confidence 322 2222 4456688888889999999999999999543 222 24666763
No 74
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=59.27 E-value=17 Score=24.84 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=14.3
Q ss_pred eEEEEEecCCeEEEEE
Q 044070 706 YTFVIGTHRPSVEVLS 721 (903)
Q Consensus 706 ~~l~vg~~d~~v~i~s 721 (903)
.|++|++..+-++||+
T Consensus 12 ~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 12 SWVAVATSAGYLRIFS 27 (27)
T ss_pred CEEEEEeCCCeEEecC
Confidence 5999999999999985
No 75
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=59.23 E-value=4.4e+02 Score=34.46 Aligned_cols=136 Identities=12% Similarity=0.076 Sum_probs=70.1
Q ss_pred CeeeeEecCCeeEE--EEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEe-eeccCCCceeEEEccCCCCcccCCCC
Q 044070 609 PVCTSWFPEHVSIS--LGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEM-QHMRLQSELSCISIPQKHPERRKSSS 685 (903)
Q Consensus 609 ~~~~~w~~~~~~I~--~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~-~~~~l~~eiscl~i~~~~~g~~~~~~ 685 (903)
+....|.+.+.++. ..+-++++++++..+|.+..+..+.. .+....-++ ...+...+-..+++....
T Consensus 1089 rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~--~~~~~~~~~~ri~n~~~~g~vv~m~a~~-------- 1158 (1431)
T KOG1240|consen 1089 RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY--NVSKRVATQVRIPNLKKDGVVVSMHAFT-------- 1158 (1431)
T ss_pred eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccc--ccccceeeeeecccccCCCceEEeeccc--------
Confidence 45667776444443 44445789999998998877643311 010111111 112222222222222110
Q ss_pred CccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEE
Q 044070 686 PISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVL 765 (903)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~ 765 (903)
+ ...+..+++++..+.|..|.....+-+-. .+..+.. + ...|+++- -...+|+
T Consensus 1159 --------------~-~~~S~~lvy~T~~~~iv~~D~r~~~~~w~-------lk~~~~h---G-~vTSi~id-p~~~Wlv 1211 (1431)
T KOG1240|consen 1159 --------------A-IVQSHVLVYATDLSRIVSWDTRMRHDAWR-------LKNQLRH---G-LVTSIVID-PWCNWLV 1211 (1431)
T ss_pred --------------c-cccceeEEEEEeccceEEecchhhhhHHh-------hhcCccc---c-ceeEEEec-CCceEEE
Confidence 0 11146888888888888887643321100 0101110 1 22455333 3456999
Q ss_pred EEecCCcEEEEEecCC
Q 044070 766 AGLRNGMLLRFEWPPD 781 (903)
Q Consensus 766 vgl~~G~l~~~~~~~~ 781 (903)
+|+..|.++-|.+...
T Consensus 1212 iGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1212 IGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred EecCCceEEEEEeecC
Confidence 9999999999987653
No 76
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=59.16 E-value=40 Score=36.22 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=35.8
Q ss_pred cceeEeeeeeccccccccCCCCCCccEEEEEeCCCcEEEEEEeCCCcceEeeEEEEecCC
Q 044070 88 GTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNP 147 (903)
Q Consensus 88 g~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d~~~~~f~tv~~~~~~~~ 147 (903)
+.|++|..++-. .......++|+|.|+++.+-|| +.+.|..+++..++..
T Consensus 177 t~ITcm~tikk~------~~d~~a~scLViGTE~~~i~iL----d~~af~il~~~~lpsv 226 (257)
T PF14779_consen 177 TVITCMATIKKS------SADEDAVSCLVIGTESGEIYIL----DPQAFTILKQVQLPSV 226 (257)
T ss_pred ceeEEeeeeccc------ccCCCCcceEEEEecCCeEEEE----CchhheeEEEEecCCC
Confidence 367888877632 2334578999999999999998 4555766667777543
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=58.56 E-value=2.7e+02 Score=30.08 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=34.8
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec--CccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA--DQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~--~~~~L~vgl~~G~l~~~~~~ 779 (903)
.++++...-.|+|+|++.|.++.+. .+. +.|..-.-+.+ .+-|+-+|-.|-.+=-+.++
T Consensus 159 nd~Fflt~GlG~v~ILsypsLkpv~-----si~-----------AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 159 NDLFFLTNGLGCVEILSYPSLKPVQ-----SIK-----------AHPSNCICIEFDPDGRYFATGSADALVSLWDVD 219 (313)
T ss_pred CCEEEEecCCceEEEEecccccccc-----ccc-----------cCCcceEEEEECCCCceEeeccccceeeccChh
Confidence 3466666668999999999755432 111 13322222233 36788888888776545544
No 78
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=58.05 E-value=2.8e+02 Score=30.61 Aligned_cols=69 Identities=10% Similarity=0.156 Sum_probs=43.1
Q ss_pred CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceE
Q 044070 628 HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYT 707 (903)
Q Consensus 628 ~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (903)
+.++++.+.||.++.+... ++.+..+.. ..-..|+||+-++. ...
T Consensus 35 G~~lAvGc~nG~vvI~D~~------T~~iar~ls-aH~~pi~sl~WS~d----------------------------gr~ 79 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFD------TFRIARMLS-AHVRPITSLCWSRD----------------------------GRK 79 (405)
T ss_pred cceeeeeccCCcEEEEEcc------ccchhhhhh-ccccceeEEEecCC----------------------------CCE
Confidence 7789999999998866333 111111100 11245788887662 356
Q ss_pred EEEEecCCeEEEEEccCCCCeeEE
Q 044070 708 FVIGTHRPSVEVLSFVPKEGLRVL 731 (903)
Q Consensus 708 l~vg~~d~~v~i~sl~~~~~l~~~ 731 (903)
|..+..|.++.+|.+-+...+..+
T Consensus 80 LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 80 LLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred eeeecCCceeEEEeccCCCceeEE
Confidence 777778888888888766655444
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.53 E-value=2.7e+02 Score=29.89 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=37.3
Q ss_pred ceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeee
Q 044070 458 RLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRM 529 (903)
Q Consensus 458 ~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~ 529 (903)
.+..+.++.----+.|.+--+. -..++++||| +|+|++.--+.+...+.... +..+.+.++..
T Consensus 50 gi~e~~s~d~~D~LfdV~Wse~---~e~~~~~a~G---DGSLrl~d~~~~s~Pi~~~k---EH~~EV~Svdw 112 (311)
T KOG0277|consen 50 GIQECQSYDTEDGLFDVAWSEN---HENQVIAASG---DGSLRLFDLTMPSKPIHKFK---EHKREVYSVDW 112 (311)
T ss_pred CeEEEEeeecccceeEeeecCC---CcceEEEEec---CceEEEeccCCCCcchhHHH---hhhhheEEecc
Confidence 3444555544444556654432 2568999999 68899998776665555443 23344555543
No 80
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.45 E-value=50 Score=35.18 Aligned_cols=68 Identities=6% Similarity=0.064 Sum_probs=41.5
Q ss_pred cCCEEEEEEeCCcEEEEEeEEeccccceEEEEe-eeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccc
Q 044070 627 AHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEM-QHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIG 705 (903)
Q Consensus 627 ~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~-~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (903)
++++++.+..+|.+-+|.... .. ..+ .-++...||-+++-.+. ..
T Consensus 72 ~e~~~~~a~GDGSLrl~d~~~--~s-----~Pi~~~kEH~~EV~Svdwn~~---------------------------~r 117 (311)
T KOG0277|consen 72 HENQVIAASGDGSLRLFDLTM--PS-----KPIHKFKEHKREVYSVDWNTV---------------------------RR 117 (311)
T ss_pred CcceEEEEecCceEEEeccCC--CC-----cchhHHHhhhhheEEeccccc---------------------------cc
Confidence 467778888888877764221 11 111 22345678877765442 14
Q ss_pred eEEEEEecCCeEEEEEccCCCCe
Q 044070 706 YTFVIGTHRPSVEVLSFVPKEGL 728 (903)
Q Consensus 706 ~~l~vg~~d~~v~i~sl~~~~~l 728 (903)
..++++.||++|.+|.-...+.+
T Consensus 118 ~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred eeEEeeccCCceEeecCCCCcce
Confidence 56667899999999986544333
No 81
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=57.06 E-value=3.4e+02 Score=30.90 Aligned_cols=68 Identities=9% Similarity=0.111 Sum_probs=37.7
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEECCCeEEEEEeeCCeEEEEEeCCceEEeeeec
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQ 466 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~~~~~~~~~l~ 466 (903)
++++++++.+|.||.+........++..+. . ...++- .+.++.+|+++ +++.|+.++.++=+++.+++
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----~-~~~ssP-~v~~~~v~v~~--~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA----G-EALSRP-VVSDGLVLVHT--SNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC----C-ceecCC-EEECCEEEEEC--CCCEEEEEEccCCCEeeeec
Confidence 577999999999988776432222332211 1 111111 23467888864 56788888743223444444
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=56.53 E-value=24 Score=36.51 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=55.8
Q ss_pred cEEEEEeCCCcEEEEEEeCCCcceEeeEEEEecCCCcc----cccCCc-EE-EECCCCCeeEEeeccccEEEEEeecCCC
Q 044070 113 DLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNS----RHQLGR-ML-AVDSSGCLIAVSAYEDRLGLFSLSMSSG 186 (903)
Q Consensus 113 D~Llv~tds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~----~~~~g~-~l-~VDP~~R~ial~~~e~~l~v~pl~~~~~ 186 (903)
-+-.|.+.+..+-+-.|-.- -++..-++-.-..+..+ ...-|. |+ +-.|.|..+|-...++.++++||+.+.-
T Consensus 45 ~lyavgsnskt~ric~yp~l-~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~ 123 (350)
T KOG0641|consen 45 GLYAVGSNSKTFRICAYPAL-IDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC 123 (350)
T ss_pred ceEEeccCCceEEEEccccc-cCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccc
Confidence 35567777777766666321 11111111111111111 122344 33 6789999999999999999999987532
Q ss_pred CccccccccCCCCccccCcccceeeeccccccEEEEEEeeC
Q 044070 187 SDIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFIST 227 (903)
Q Consensus 187 ~~~~~~~~~sP~~~e~~~s~~~~~~~~~~~~~i~dm~FL~~ 227 (903)
.. ....+| ...-.+.|.||+||+.
T Consensus 124 ~~-----~g~dle------------~nmhdgtirdl~fld~ 147 (350)
T KOG0641|consen 124 NA-----TGHDLE------------FNMHDGTIRDLAFLDD 147 (350)
T ss_pred cc-----cCccee------------eeecCCceeeeEEecC
Confidence 11 111222 2334689999999998
No 83
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=56.19 E-value=4.5e+02 Score=31.96 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=70.4
Q ss_pred cCCceeEEEEEEecCCCcCeEEEEc-CCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEE
Q 044070 39 KGSVVLQVAHGHLRSPTSNDVVFGK-ETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVV 117 (903)
Q Consensus 39 ~pt~V~~sl~g~f~~~~~~~LVv~k-~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv 117 (903)
.|+.|+.-.. +.+.+.|+++| +..||||.+..+-.++.+..-+--+.|.+++=.. . -. +
T Consensus 24 ~Ps~I~slA~----s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e----------~----~R--L 83 (691)
T KOG2048|consen 24 KPSEIVSLAY----SHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE----------G----GR--L 83 (691)
T ss_pred eccceEEEEE----eccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc----------C----Ce--E
Confidence 3555543332 34567799998 5699999998776677777766666666665320 1 12 3
Q ss_pred EeCCCcEEEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEE
Q 044070 118 ISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLF 179 (903)
Q Consensus 118 ~tds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~ 179 (903)
.+-.+.=++.+||..+.+-. ..+...|.. .=-+++.|.+--+|+.+-+|.+..+
T Consensus 84 FS~g~sg~i~EwDl~~lk~~----~~~d~~gg~----IWsiai~p~~~~l~IgcddGvl~~~ 137 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQK----YNIDSNGGA----IWSIAINPENTILAIGCDDGVLYDF 137 (691)
T ss_pred EeecCCceEEEEecccCcee----EEecCCCcc----eeEEEeCCccceEEeecCCceEEEE
Confidence 44556667889996654321 122222211 0147999999999999988844444
No 84
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=56.16 E-value=72 Score=34.32 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=38.0
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEee-cC--ccEEEEEecCCcEEEE
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVL-AD--QFYVLAGLRNGMLLRF 776 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~-~~--~~~L~vgl~~G~l~~~ 776 (903)
...|++||.++.|.|+.-. .+..+....++ ..|..|.... ++ ...++|..|||.++..
T Consensus 195 ~scLViGTE~~~i~iLd~~---af~il~~~~lp-----------svPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 195 VSCLVIGTESGEIYILDPQ---AFTILKQVQLP-----------SVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred cceEEEEecCCeEEEECch---hheeEEEEecC-----------CCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 4689999999999998533 23334333332 2566665553 22 3459999999999754
No 85
>PTZ00421 coronin; Provisional
Probab=55.75 E-value=4.2e+02 Score=31.53 Aligned_cols=22 Identities=5% Similarity=0.099 Sum_probs=18.5
Q ss_pred ceEEEEEecCCeEEEEEccCCC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKE 726 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~ 726 (903)
..+++.|++|++|+||.+...+
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCc
Confidence 4588999999999999987654
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=55.56 E-value=1.4e+02 Score=36.58 Aligned_cols=178 Identities=13% Similarity=0.135 Sum_probs=93.8
Q ss_pred eEEEEEecCce-EEEEeCCc-----cccc--cCcCCcc-CCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCC
Q 044070 537 SFLVLSFVEET-RVLRVGLN-----FTDV--TDSVGFR-PDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLS 607 (903)
Q Consensus 537 ~~LvlS~~~~T-~vl~~~~~-----~~e~--~~~~~f~-~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~ 607 (903)
.||+-|-.+.| ++++++-. |... --...|. .|.+-...|.+ .-.+|+.+....
T Consensus 381 ~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL---------D~KvRiWsI~d~--------- 442 (712)
T KOG0283|consen 381 NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL---------DGKVRLWSISDK--------- 442 (712)
T ss_pred CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc---------ccceEEeecCcC---------
Confidence 46666555555 47776531 1110 0011222 34445555555 246777765433
Q ss_pred CCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeec------cC-CCceeEEEccCCCC
Q 044070 608 YPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHM------RL-QSELSCISIPQKHP 678 (903)
Q Consensus 608 ~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~------~l-~~eiscl~i~~~~~ 678 (903)
.+..|.--..-|++++-. |.+.+|.+-+|...++... | .++.....+ .. ...|+.+-..+..
T Consensus 443 --~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~-----~-lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~- 513 (712)
T KOG0283|consen 443 --KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE-----G-LKLVSDFHIRLHNKKKKQGKRITGLQFFPGD- 513 (712)
T ss_pred --eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEcc-----C-CeEEEeeeEeeccCccccCceeeeeEecCCC-
Confidence 577897412346666655 5677888878865544221 1 233321111 11 2246666554321
Q ss_pred cccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEE-eeeeeecccCCCCCCCCCcceeEEe
Q 044070 679 ERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLA-SGSIVLTNTMGTAISGCIPQDVRLV 757 (903)
Q Consensus 679 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s-~~~l~~~~~~~~~~s~~~p~si~l~ 757 (903)
..-+.|.+.|..|+||.+.+.+.+..+- .+ +.. ++ .+..+.
T Consensus 514 --------------------------~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~------n~~---SQ---~~Asfs 555 (712)
T KOG0283|consen 514 --------------------------PDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR------NTS---SQ---ISASFS 555 (712)
T ss_pred --------------------------CCeEEEecCCCceEEEeccchhhhhhhcccc------cCC---cc---eeeeEc
Confidence 2256678889999999986554322110 00 000 11 122233
Q ss_pred ecCccEEEEEecCCcEEEEEecC
Q 044070 758 LADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 758 ~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
. ++-|+++|-.|-.++.+..+.
T Consensus 556 ~-Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 556 S-DGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred c-CCCEEEEeecCceEEEEeCCC
Confidence 2 678899999999998898754
No 87
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=55.52 E-value=3.9e+02 Score=31.05 Aligned_cols=103 Identities=11% Similarity=0.196 Sum_probs=63.3
Q ss_pred CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceE
Q 044070 628 HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYT 707 (903)
Q Consensus 628 ~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (903)
+++|+++=.+|.|.++... ++ +| +..+.++..|+.+.+... +..
T Consensus 315 ~~fia~~G~~G~I~lLhak----T~--el--i~s~KieG~v~~~~fsSd----------------------------sk~ 358 (514)
T KOG2055|consen 315 SNFIAIAGNNGHIHLLHAK----TK--EL--ITSFKIEGVVSDFTFSSD----------------------------SKE 358 (514)
T ss_pred CCeEEEcccCceEEeehhh----hh--hh--hheeeeccEEeeEEEecC----------------------------CcE
Confidence 5566766555655544322 11 22 356677788888777642 345
Q ss_pred EEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 708 FVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 708 l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
|.+.+.+|.|.+|.|....++.....+ +...-.+++.. +...||-+|...|.+-.|..+
T Consensus 359 l~~~~~~GeV~v~nl~~~~~~~rf~D~------------G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNSCLHRFVDD------------GSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred EEEEcCCceEEEEecCCcceEEEEeec------------Cccceeeeeec-CCCceEEeccCcceEEEeccc
Confidence 666677889999999876544322111 11122455443 234599999999999999864
No 88
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=55.46 E-value=1.4e+02 Score=33.44 Aligned_cols=82 Identities=10% Similarity=0.134 Sum_probs=44.5
Q ss_pred eeEecCCeeEEEEEecCCEEEEEEeCC---------cEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccC
Q 044070 612 TSWFPEHVSISLGAVAHNMIIVSTSNP---------CFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRK 682 (903)
Q Consensus 612 ~~w~~~~~~I~~As~~~~~vvva~~~~---------~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~ 682 (903)
..|.|.|-.+.+..-..+.+.|....+ +-++..+. .++ +.+.+++++.++.+|.+....
T Consensus 233 ~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~---~t~----krv~Ri~l~~~~~Si~Vsqd~----- 300 (342)
T PF06433_consen 233 DGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL---KTH----KRVARIPLEHPIDSIAVSQDD----- 300 (342)
T ss_dssp TTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET---TTT----EEEEEEEEEEEESEEEEESSS-----
T ss_pred cCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC---CCC----eEEEEEeCCCccceEEEccCC-----
Confidence 589986666666655555555544332 12222121 122 235677777888788886531
Q ss_pred CCCCccccCCCCCCCCCCccccceEEEEEe-cCCeEEEEEccCCCC
Q 044070 683 SSSPISLVSNSSVPALPAGVIIGYTFVIGT-HRPSVEVLSFVPKEG 727 (903)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~-~d~~v~i~sl~~~~~ 727 (903)
...|.... .++.|.||.....+.
T Consensus 301 ----------------------~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 301 ----------------------KPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp ----------------------S-EEEEEETTTTEEEEEETTT--E
T ss_pred ----------------------CcEEEEEcCCCCeEEEEeCcCCcE
Confidence 34554444 488999998765543
No 89
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=55.21 E-value=2.7e+02 Score=32.38 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=73.2
Q ss_pred CeEEEEEeeCCeEEEEEeCCceEEeeee-cccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCC
Q 044070 438 RFLSAFVEMGDGMVLKEENGRLVYTSPI-QNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAP 516 (903)
Q Consensus 438 ~~lFvgS~~gds~L~~~~~~~~~~~~~l-~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~ 516 (903)
..+++| ..|+-+.++.--.-++++++ .-+|+|.|++..+.. .+.+.+|- .+++++..+++++-.....+
T Consensus 313 n~fl~G--~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g----~rFissSD---dks~riWe~~~~v~ik~i~~- 382 (503)
T KOG0282|consen 313 NIFLVG--GSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG----RRFISSSD---DKSVRIWENRIPVPIKNIAD- 382 (503)
T ss_pred cEEEEe--cCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC----ceEeeecc---CccEEEEEcCCCccchhhcc-
Confidence 566666 45677777752222355555 579999999998743 35666664 56999999999876544333
Q ss_pred CCCCccEEEEeeecCCCCcceEEEE-EecCceEEEEeCCccccccCcCCccCCCCeEEEEeeCCCeEEEE
Q 044070 517 IYQGITGTWTVRMKVSDPYHSFLVL-SFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQI 585 (903)
Q Consensus 517 ~~~~v~~iWtl~~~~~~~~~~~Lvl-S~~~~T~vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~~~~~ivQV 585 (903)
..+.+.+.-...+++.++.. |..+.+.+|++.. .|..+..-.+-|....|+-+||
T Consensus 383 -----~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~---------~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 383 -----PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP---------PFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred -----hhhccCcceecCCCCCeehhhccCceEEEEeccc---------ccccCHhhhhcceeccCceeeE
Confidence 12233332222234555554 6777777776421 3445555555555555555554
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=54.09 E-value=4e+02 Score=30.75 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=28.2
Q ss_pred eeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCC--ceeEEEccC
Q 044070 619 VSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQS--ELSCISIPQ 675 (903)
Q Consensus 619 ~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~--eiscl~i~~ 675 (903)
..|..-+.. +-+++++..++.+.++..- +++..+.++++. ++..+++..
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLR--------Kl~n~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLR--------KLKNFKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEeh--------hhcccceeeccccccceeEEEcC
Confidence 456555554 5577888888876665221 333345555543 477777644
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=53.37 E-value=2.5e+02 Score=32.46 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=19.0
Q ss_pred ceEEEEEecCCeEEEEEccCC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPK 725 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~ 725 (903)
++++|.|.|+|.|++|...+.
T Consensus 392 sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 392 SDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred CceEEecCCCCceEEEEecCC
Confidence 689999999999999998764
No 92
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=52.79 E-value=3.2e+02 Score=29.21 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEE-ECCCeEEEEEeeCCeEEEEEeC-CceEEeeeeccc
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLW-VEGRFLSAFVEMGDGMVLKEEN-GRLVYTSPIQNI 468 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~-l~~~~lFvgS~~gds~L~~~~~-~~~~~~~~l~N~ 468 (903)
...++++--||.+|-+.++. | +++.. .-+.+.--.++.- -.++-+|-|++-|.--+|.... +..+.++.+.|=
T Consensus 126 enSi~~AgGD~~~y~~dlE~-G---~i~r~-~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 126 ENSILFAGGDGVIYQVDLED-G---RIQRE-YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred CCcEEEecCCeEEEEEEecC-C---EEEEE-EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 34466777788888777763 2 23210 0111111122211 2467889999999888887753 345555555442
Q ss_pred cccc----c--eEEeecCCCCCCeEEEEeeCCCCCcEEEEecc
Q 044070 469 APIL----D--MSVVDYHDEKRDQMFACCGVAPEGSLRIIRSG 505 (903)
Q Consensus 469 gPI~----D--~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~g 505 (903)
.-.+ . +++. .++=+..||.|+.-+|=.||..
T Consensus 201 ~~lRp~~g~wigala------~~edWlvCGgGp~lslwhLrss 237 (325)
T KOG0649|consen 201 NLLRPDWGKWIGALA------VNEDWLVCGGGPKLSLWHLRSS 237 (325)
T ss_pred hhcCcccCceeEEEe------ccCceEEecCCCceeEEeccCC
Confidence 2222 0 2221 1233888999988777666553
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=52.30 E-value=1.7e+02 Score=33.53 Aligned_cols=111 Identities=7% Similarity=0.159 Sum_probs=64.0
Q ss_pred EEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCcc
Q 044070 623 LGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGV 702 (903)
Q Consensus 623 ~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 702 (903)
++..++.|++-+..++... |-+.+ +| ..|.......-+-+++|..+.+.
T Consensus 310 s~h~tgeYllsAs~d~~w~-Fsd~~---~g-~~lt~vs~~~s~v~~ts~~fHpD-------------------------- 358 (506)
T KOG0289|consen 310 SLHPTGEYLLSASNDGTWA-FSDIS---SG-SQLTVVSDETSDVEYTSAAFHPD-------------------------- 358 (506)
T ss_pred eeccCCcEEEEecCCceEE-EEEcc---CC-cEEEEEeeccccceeEEeeEcCC--------------------------
Confidence 3444567776665555444 33331 33 13443332233456778887663
Q ss_pred ccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 703 IIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 703 ~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
+.+++.|+.|+.|.||.|....- ++ ..++..+. + .+|.+... +-||.++..||.+.-|.+..
T Consensus 359 --gLifgtgt~d~~vkiwdlks~~~---~a--------~Fpght~~-v-k~i~FsEN-GY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 359 --GLIFGTGTPDGVVKIWDLKSQTN---VA--------KFPGHTGP-V-KAISFSEN-GYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred --ceEEeccCCCceEEEEEcCCccc---cc--------cCCCCCCc-e-eEEEeccC-ceEEEEEecCCeEEEEEehh
Confidence 56888888899999999876432 11 11111111 2 45544422 57899999999987777653
No 94
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=52.18 E-value=2.4e+02 Score=30.15 Aligned_cols=142 Identities=14% Similarity=0.174 Sum_probs=80.4
Q ss_pred CCeEEE-EEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceE
Q 044070 579 DGLLVQ-IHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYE 655 (903)
Q Consensus 579 ~~~ivQ-VT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~ 655 (903)
+..|+- -..+.||+.+.... ..++.... ...+.++-+. +.+|.++ .++.+.+ .+. . .
T Consensus 155 D~~iLSSadd~tVRLWD~rTg----------t~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~F-wda----k---s 214 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTG----------TEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKF-WDA----K---S 214 (334)
T ss_pred CceEEeeccCCceEEEEeccC----------cEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEE-ecc----c---c
Confidence 344444 33567888875432 23333331 2235555554 3344444 4444544 333 1 3
Q ss_pred EEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeee
Q 044070 656 IYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGS 735 (903)
Q Consensus 656 L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~ 735 (903)
+..++.+.|...|.+-++.+. ..+++.|..|+.++.|.....+.+.....
T Consensus 215 f~~lKs~k~P~nV~SASL~P~----------------------------k~~fVaGged~~~~kfDy~TgeEi~~~nk-- 264 (334)
T KOG0278|consen 215 FGLLKSYKMPCNVESASLHPK----------------------------KEFFVAGGEDFKVYKFDYNTGEEIGSYNK-- 264 (334)
T ss_pred ccceeeccCccccccccccCC----------------------------CceEEecCcceEEEEEeccCCceeeeccc--
Confidence 555678888888887777652 35777788899999998876554322111
Q ss_pred eeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecCC
Q 044070 736 IVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPD 781 (903)
Q Consensus 736 l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~~ 781 (903)
+. -+ ...++.+.+-|.. --.|-.||.+.-++..+.
T Consensus 265 -------gh-~g--pVhcVrFSPdGE~-yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 265 -------GH-FG--PVHCVRFSPDGEL-YASGSEDGTIRLWQTTPG 299 (334)
T ss_pred -------CC-CC--ceEEEEECCCCce-eeccCCCceEEEEEecCC
Confidence 11 01 1134444433433 458999999999998764
No 95
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=52.16 E-value=4.1e+02 Score=30.28 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=35.5
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEe
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEW 778 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~ 778 (903)
...++++..||.|..++....+.+ ....+. +. .+..+..+. ...|+++.++|.|+.++.
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~---~~~~~~-----~~----~~~s~P~~~---~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFV---AQQKVD-----SS----GFLSEPVVA---DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEE---EEEEcC-----CC----cceeCCEEE---CCEEEEEeCCceEEEEeC
Confidence 357788989999988887654432 222211 00 011222222 447999999999988763
No 96
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=52.05 E-value=3.2e+02 Score=29.06 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=64.7
Q ss_pred eEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCC
Q 044070 620 SISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALP 699 (903)
Q Consensus 620 ~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~ 699 (903)
.|....+++.-|+-...+|++--|..- .| + ...-.+.+.|+|+++.+.
T Consensus 147 ~V~Si~v~~heIvaGS~DGtvRtydiR----~G--~---l~sDy~g~pit~vs~s~d----------------------- 194 (307)
T KOG0316|consen 147 GVSSIDVAEHEIVAGSVDGTVRTYDIR----KG--T---LSSDYFGHPITSVSFSKD----------------------- 194 (307)
T ss_pred ceeEEEecccEEEeeccCCcEEEEEee----cc--e---eehhhcCCcceeEEecCC-----------------------
Confidence 366666666666665556665433211 22 1 233467889999999763
Q ss_pred CccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 700 AGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 700 ~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
+....+|+-|++++++.-...+.|...- .. .+++. -..-.+.+ ...+++-|-.||.++.|.+.
T Consensus 195 -----~nc~La~~l~stlrLlDk~tGklL~sYk-Gh----kn~ey------kldc~l~q-sdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 195 -----GNCSLASSLDSTLRLLDKETGKLLKSYK-GH----KNMEY------KLDCCLNQ-SDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred -----CCEEEEeeccceeeecccchhHHHHHhc-cc----cccee------eeeeeecc-cceeEEeccCCceEEEEEec
Confidence 4677789999999998654444432210 00 00000 00111111 13568899999999999876
Q ss_pred C
Q 044070 780 P 780 (903)
Q Consensus 780 ~ 780 (903)
.
T Consensus 258 d 258 (307)
T KOG0316|consen 258 D 258 (307)
T ss_pred c
Confidence 4
No 97
>PTZ00420 coronin; Provisional
Probab=51.51 E-value=5.2e+02 Score=31.36 Aligned_cols=60 Identities=3% Similarity=-0.057 Sum_probs=35.5
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..+++.|.+|++|+||.+...+.+..+ .. .. ...++.+.. +..+|.++-.||.+..|.+.
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~~~~i-----~~----~~-----~V~Slswsp-dG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKRAFQI-----NM----PK-----KLSSLKWNI-KGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcEEEEE-----ec----CC-----cEEEEEECC-CCCEEEEEecCCEEEEEECC
Confidence 346778889999999998765432111 00 00 113443332 24456667788888777654
No 98
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=51.34 E-value=3.8e+02 Score=30.49 Aligned_cols=98 Identities=10% Similarity=0.041 Sum_probs=53.8
Q ss_pred CcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEEec-CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCC
Q 044070 588 NAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAVA-HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQ 665 (903)
Q Consensus 588 ~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~~-~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~ 665 (903)
.+|.+++.... +.+.++.. ....+..+... +.++.++..+|.+-.+... + .+.+.+....
T Consensus 16 ~~v~viD~~t~----------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~----~----~~~v~~i~~G 77 (369)
T PF02239_consen 16 GSVAVIDGATN----------KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA----T----GKVVATIKVG 77 (369)
T ss_dssp TEEEEEETTT-----------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT----S----SSEEEEEE-S
T ss_pred CEEEEEECCCC----------eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC----c----ccEEEEEecC
Confidence 56777877653 24555543 22233333333 5678777666655433211 1 2234555667
Q ss_pred CceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEec-CCeEEEEEccCCCCeeEE
Q 044070 666 SELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTH-RPSVEVLSFVPKEGLRVL 731 (903)
Q Consensus 666 ~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~-d~~v~i~sl~~~~~l~~~ 731 (903)
...-++++.+. ..+++|+++ ++++.|+....++.+..+
T Consensus 78 ~~~~~i~~s~D----------------------------G~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 78 GNPRGIAVSPD----------------------------GKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp SEEEEEEE--T----------------------------TTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred CCcceEEEcCC----------------------------CCEEEEEecCCCceeEeccccccceeec
Confidence 77777887652 458888876 999999987766655444
No 99
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=50.55 E-value=4.7e+02 Score=30.51 Aligned_cols=221 Identities=15% Similarity=0.232 Sum_probs=109.1
Q ss_pred eEEEEC----CCeEEEEEeeCCeEEEEEeCCceEEeeee-cccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEec-
Q 044070 431 ALLWVE----GRFLSAFVEMGDGMVLKEENGRLVYTSPI-QNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS- 504 (903)
Q Consensus 431 sl~~l~----~~~lFvgS~~gds~L~~~~~~~~~~~~~l-~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~- 504 (903)
.++.|+ ..+|..|+..|---+|...+. .+.+| .+=|||+.+.--. ... +.++| |.+|...+.-.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~---l~~tl~~HkgPI~slKWnk-----~G~-yilS~-~vD~ttilwd~~ 306 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGN---LISTLGQHKGPIFSLKWNK-----KGT-YILSG-GVDGTTILWDAH 306 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCch---hhhhhhccCCceEEEEEcC-----CCC-EEEec-cCCccEEEEecc
Confidence 355553 457788888887777766542 23333 4678998776432 122 33333 35566555444
Q ss_pred -cCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEeCCc-----c----cccc----CcCCcc----
Q 044070 505 -GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLN-----F----TDVT----DSVGFR---- 566 (903)
Q Consensus 505 -gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~~~~-----~----~e~~----~~~~f~---- 566 (903)
|.-.+. ..+. ..++..=-|. ..+.|...+....=.|++++++ + .|+. +..+-.
T Consensus 307 ~g~~~q~-f~~~-s~~~lDVdW~-------~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 307 TGTVKQQ-FEFH-SAPALDVDWQ-------SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred CceEEEe-eeec-cCCccceEEe-------cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe
Confidence 222211 1111 1122223353 1244555455555568888752 1 1111 111111
Q ss_pred CCCCeEEEEeeCCC---eEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEecCCEEEEEEeCCcEEEE
Q 044070 567 PDVCTLACGLVADG---LLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFI 643 (903)
Q Consensus 567 ~~~~Tl~a~~~~~~---~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~~~~vvva~~~~~il~~ 643 (903)
.+-.||-.=.++++ .=+|+++++|..+ .|.|.| .++...-.+..++-+..++.+...
T Consensus 378 SdD~TlkiWs~~~~~~~~~l~~Hskei~t~-------------------~wsp~g-~v~~n~~~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSNSVHDLQAHSKEIYTI-------------------KWSPTG-PVTSNPNMNLMLASASFDSTVKLW 437 (524)
T ss_pred cCCCeeEeeecCCCcchhhhhhhccceeeE-------------------eecCCC-CccCCCcCCceEEEeecCCeEEEE
Confidence 12245554444432 3678888888765 344322 121111112222222333433332
Q ss_pred EeEEeccccceEEEEeeec-cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEc
Q 044070 644 LGVRSLSVSHYEIYEMQHM-RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSF 722 (903)
Q Consensus 644 ~~~~~~~~g~~~L~~~~~~-~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl 722 (903)
... +| +.+..+ .....|.++++.+. ..++|.|..|+.|.||+.
T Consensus 438 dv~----~g----v~i~~f~kH~~pVysvafS~~----------------------------g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 438 DVE----SG----VPIHTLMKHQEPVYSVAFSPN----------------------------GRYLASGSLDGCVHIWST 481 (524)
T ss_pred Ecc----CC----ceeEeeccCCCceEEEEecCC----------------------------CcEEEecCCCCeeEeccc
Confidence 221 22 222222 33556788888763 569999999999999998
Q ss_pred cCCC
Q 044070 723 VPKE 726 (903)
Q Consensus 723 ~~~~ 726 (903)
+.-+
T Consensus 482 ~~~~ 485 (524)
T KOG0273|consen 482 KTGK 485 (524)
T ss_pred cchh
Confidence 7654
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=48.41 E-value=1.2e+02 Score=34.60 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.3
Q ss_pred ceEEEEEecCCeEEEEEccCCC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKE 726 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~ 726 (903)
+.|+|+|..||+|+||++...+
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGK 420 (459)
T ss_pred CceeeeccCCCcEEEEEccCce
Confidence 5699999999999999997655
No 101
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=47.78 E-value=6e+02 Score=30.98 Aligned_cols=174 Identities=17% Similarity=0.223 Sum_probs=90.8
Q ss_pred cCCCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCCCcEEEEEEeC
Q 044070 52 RSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCN 131 (903)
Q Consensus 52 ~~~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d~ 131 (903)
..|+-.+|++|-+++|-||..++.+.|+.+--+. .++.+++=-+--+ |-.....|-++|.-.+.-=-+|+|+.
T Consensus 20 fkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHK--DtVycVAys~dGk-----rFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 20 FKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHK--DTVYCVAYAKDGK-----RFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred ECCCCceEEEecCCEEEEEeCCCccccccccccc--ceEEEEEEccCCc-----eeccCCCceeEEEecccccceeeecc
Confidence 3577899999999999999998777666665544 3444444221000 00123335555554445555666664
Q ss_pred CC----cceEeeEEEEecCC----Cccc---------ccCCcE--EEECCCCCeeEEeeccccEEEEEeecCCCCccccc
Q 044070 132 EM----HRFFPVAQVHLSNP----GNSR---------HQLGRM--LAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDK 192 (903)
Q Consensus 132 ~~----~~f~tv~~~~~~~~----g~~~---------~~~g~~--l~VDP~~R~ial~~~e~~l~v~pl~~~~~~~~~~~ 192 (903)
.. ..|..++++-..-+ |... ....+. ++=.-+|.+.++...+|.+.+= +...+.. .
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiR--Nk~gEek---~ 167 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIR--NKNGEEK---V 167 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEee--cCCCCcc---e
Confidence 32 22443322211000 1100 000111 2344567777777777766553 2211111 1
Q ss_pred cccCCCCccccCcccceeeeccccccEEEEEEeeCCCCCCCCCCCcEEEEEEeecCCccceEEEEEEEc
Q 044070 193 KICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNI 261 (903)
Q Consensus 193 ~~~sP~~~e~~~s~~~~~~~~~~~~~i~dm~FL~~~~~~~~~~~~PtlavL~~~~~~~~~~l~~y~ldl 261 (903)
.|..|= -++..|+.++|... +-+ ..+-++|++ .+...+.||+++-
T Consensus 168 ~I~Rpg---------------g~Nspiwsi~~~p~---sg~-G~~di~aV~-----DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 168 KIERPG---------------GSNSPIWSICWNPS---SGE-GRNDILAVA-----DWGQTLSFYQLSG 212 (1081)
T ss_pred EEeCCC---------------CCCCCceEEEecCC---CCC-CccceEEEE-----eccceeEEEEecc
Confidence 222221 14677999999887 222 234577876 2456789998865
No 102
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=47.06 E-value=58 Score=36.25 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=42.6
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecCC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPD 781 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~~ 781 (903)
..|++.|..|+++.||.|....+...+ + +.. ...+.+.+.. ..+|||.+..|+.+-.|.+..+
T Consensus 163 n~wf~tgs~DrtikIwDlatg~Lkltl-------t----Ghi--~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTL-------T----GHI--ETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEee-------c----chh--heeeeeeecc-cCceEEEecCCCeeEEEechhh
Confidence 469999999999999999765532111 1 100 0124443331 3799999999999999987643
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=46.64 E-value=3.9e+02 Score=30.16 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=36.4
Q ss_pred eEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEe-ecCccEEEEEecCCcEEEEEec
Q 044070 706 YTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLV-LADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 706 ~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~-~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
.=++.|.+|.+|+||...+...-+.. .+..|. +-+++. .++..|++.|-.||.+=-++-.
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiY------htkRMq--------~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIY------HTKRMQ--------HVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred chhccccccceEEEeecCCCcchhhh------hHhhhh--------eeeEEEEeccccEEEecCCCcceeeeecc
Confidence 34567999999999987654321111 111111 111111 2468899999999999777743
No 104
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=45.83 E-value=5.7e+02 Score=30.15 Aligned_cols=265 Identities=13% Similarity=0.193 Sum_probs=124.9
Q ss_pred EEEEeeccCCCCCCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEECCCeEEEEEeeCCeEEEEEeCCc
Q 044070 379 VCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGR 458 (903)
Q Consensus 379 ~~~~~~~~~~~~~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~~~ 458 (903)
+..+.|-|.+ ..+++.--.|.+|+-++..++-.-+..+-..... .--.|++.+.||-+.-|-..|+=.+|.-....
T Consensus 203 v~~a~FHPtd---~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 203 VFLATFHPTD---PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENGDVITGDSGGNILIWSKGTNR 278 (626)
T ss_pred EEEEEeccCC---CcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCCCEEeecCCceEEEEeCCCce
Confidence 3334445653 4577777888998886654321001111111111 23456777788887777655554444322111
Q ss_pred eEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecC--CCCCCccEEEEeeecCCCCcc
Q 044070 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTA--PIYQGITGTWTVRMKVSDPYH 536 (903)
Q Consensus 459 ~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~--~~~~~v~~iWtl~~~~~~~~~ 536 (903)
+. -+...-=|-|..++.... ..|+. .|++-.+..--.-++ .+..++ ++..+++- +-- ...+
T Consensus 279 ~~-k~~~aH~ggv~~L~~lr~-----GtllS---GgKDRki~~Wd~~y~--k~r~~elPe~~G~iRt---v~e---~~~d 341 (626)
T KOG2106|consen 279 IS-KQVHAHDGGVFSLCMLRD-----GTLLS---GGKDRKIILWDDNYR--KLRETELPEQFGPIRT---VAE---GKGD 341 (626)
T ss_pred EE-eEeeecCCceEEEEEecC-----ccEee---cCccceEEecccccc--ccccccCchhcCCeeE---Eec---CCCc
Confidence 21 122244455666665432 23443 355555544433332 233332 12222222 211 1112
Q ss_pred eEEEEEecCceEEEE-eCCcccccc-----CcCCccC---CCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCC
Q 044070 537 SFLVLSFVEETRVLR-VGLNFTDVT-----DSVGFRP---DVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLS 607 (903)
Q Consensus 537 ~~LvlS~~~~T~vl~-~~~~~~e~~-----~~~~f~~---~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~ 607 (903)
|++.....+.+.- +...+.... +.-||.+ +++-+-||+ .+.+++.+.+
T Consensus 342 --i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gq----------dk~v~lW~~~----------- 398 (626)
T KOG2106|consen 342 --ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQ----------DKHVRLWNDH----------- 398 (626)
T ss_pred --EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccC----------cceEEEccCC-----------
Confidence 4444333333221 111111110 1012211 112222322 4567777622
Q ss_pred CCeeeeEec-CCeeEEEEEecCC-EEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCC
Q 044070 608 YPVCTSWFP-EHVSISLGAVAHN-MIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSS 685 (903)
Q Consensus 608 ~~~~~~w~~-~~~~I~~As~~~~-~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~ 685 (903)
..+|.- -+.+..+|..... .|++-...|..+.+ ..+ +..+..+ +.+ ..+++|+...+.
T Consensus 399 ---k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~-d~e-----~~~lv~~-~~d-~~~ls~v~ysp~--------- 458 (626)
T KOG2106|consen 399 ---KLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVL-DTE-----TQDLVTI-HTD-NEQLSVVRYSPD--------- 458 (626)
T ss_pred ---ceeEEEEecCceeEeeccCcceEEEeeccceEEEE-ecc-----cceeEEE-Eec-CCceEEEEEcCC---------
Confidence 247763 2334556666533 44444445544333 322 1234333 334 788899998774
Q ss_pred CccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCC
Q 044070 686 PISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKE 726 (903)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~ 726 (903)
..++|||+.|+.|.||..+...
T Consensus 459 -------------------G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 459 -------------------GAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred -------------------CCEEEEecCCCeEEEEEECCCC
Confidence 5699999999999999998754
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=45.79 E-value=4.7e+02 Score=31.94 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred eEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEe-eeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCC
Q 044070 620 SISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEM-QHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPAL 698 (903)
Q Consensus 620 ~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~-~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~ 698 (903)
+|--+.+....+++...+..+..|... ..... --+....+|+|+++..
T Consensus 63 ~i~y~e~~~~~l~~g~~D~~i~v~~~~--------~~~P~~~LkgH~snVC~ls~~~----------------------- 111 (745)
T KOG0301|consen 63 SICYAESDKGRLVVGGMDTTIIVFKLS--------QAEPLYTLKGHKSNVCSLSIGE----------------------- 111 (745)
T ss_pred cceeccccCcceEeecccceEEEEecC--------CCCchhhhhccccceeeeecCC-----------------------
Q ss_pred CCccccceEEEEEecCCeEEEEEccCCCCe---eEEEeeeeeecccCCCCCCCCCcceeEEeec----------------
Q 044070 699 PAGVIIGYTFVIGTHRPSVEVLSFVPKEGL---RVLASGSIVLTNTMGTAISGCIPQDVRLVLA---------------- 759 (903)
Q Consensus 699 ~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l---~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~---------------- 759 (903)
...++-|.||.|++||...+...- .+.+..++- .+|+...+...
T Consensus 112 ------~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~-----------~l~e~~~vTgsaDKtIklWk~~~~l~t 174 (745)
T KOG0301|consen 112 ------DGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVA-----------SLPENTYVTGSADKTIKLWKGGTLLKT 174 (745)
T ss_pred ------cCceEecccccceEEecchhhhcccCCcchheeeee-----------ecCCCcEEeccCcceeeeccCCchhhh
Q ss_pred --------------CccEEEEEecCCcEEEEEecCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCccc
Q 044070 760 --------------DQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPINL 825 (903)
Q Consensus 760 --------------~~~~L~vgl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 825 (903)
+...++-.-.||.+..+.++ |.
T Consensus 175 f~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~---ge----------------------------------------- 210 (745)
T KOG0301|consen 175 FSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD---GE----------------------------------------- 210 (745)
T ss_pred hccchhheeeeEEecCCCeEeecCCceEEEEecc---Cc-----------------------------------------
Q ss_pred cccceeeecceeeEEEEEEeCCCceEEEec-CCCeEEEEeCCceEEEEeeecCCcccCCCCCCC----CCCeEEEE
Q 044070 826 QLIATRRIGITPVFLVPLSDSLDADMIALS-DRPWLLQTARHSLAYTSISFQPSTHATPVCSVE----CPKGILFV 896 (903)
Q Consensus 826 ~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~li~~~~~~l~~~~l~~~~~~~~~~f~s~~----~~~g~~~~ 896 (903)
.=.++-|.+.....--...+..-|+.|| ||..-|....--.+...+-...+.+++-..+.+ |.||+|++
T Consensus 211 --~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrV 284 (745)
T KOG0301|consen 211 --VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRV 284 (745)
T ss_pred --eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEE
No 106
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=45.67 E-value=1.7e+02 Score=31.51 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=41.1
Q ss_pred CCccEEEEEeCCCcEEEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEE
Q 044070 110 MGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLG 177 (903)
Q Consensus 110 ~~~D~Llv~tds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~ 177 (903)
...|+.++++-.|++-||.|= .+..+....-...++. -+.+||.||+.|+++.+-..-
T Consensus 157 ~~nd~Fflt~GlG~v~ILsyp----sLkpv~si~AH~snCi------cI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYP----SLKPVQSIKAHPSNCI------CIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred CCCCEEEEecCCceEEEEecc----ccccccccccCCcceE------EEEECCCCceEeeccccceee
Confidence 567999999999999999996 3333333333333332 468999999999998765433
No 107
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=44.92 E-value=5e+02 Score=31.41 Aligned_cols=82 Identities=11% Similarity=0.074 Sum_probs=50.3
Q ss_pred eeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCC--eeEEEeeeee
Q 044070 660 QHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEG--LRVLASGSIV 737 (903)
Q Consensus 660 ~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~--l~~~s~~~l~ 737 (903)
....-..+|.|+.+.+.+ ..+||.|+.+|.|.+|.+..... ...++.++.+
T Consensus 237 ~~~~~~s~v~~~~f~p~~---------------------------p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~s 289 (555)
T KOG1587|consen 237 LVLESPSEVTCLKFCPFD---------------------------PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVS 289 (555)
T ss_pred EEEecCCceeEEEeccCC---------------------------cceEEeeccCceEEEEEccCCCCCCCccccccccc
Confidence 334556889999998853 46899999999999999876543 2222221111
Q ss_pred ecccCCCCCCCCCcceeEEe---ecC-ccEEEEEecCCcEEEEEecC
Q 044070 738 LTNTMGTAISGCIPQDVRLV---LAD-QFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 738 ~~~~~~~~~s~~~p~si~l~---~~~-~~~L~vgl~~G~l~~~~~~~ 780 (903)
.+..+..+ ... ..-++.+-.||.+..+.++.
T Consensus 290 ------------h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 290 ------------HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred ------------CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence 11222111 111 23355666699999997764
No 108
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.17 E-value=84 Score=34.43 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=55.0
Q ss_pred ecCCceeEEEEEEecCCCcCeEEEEcCC------EEEEEEecCCC-cEEEEEEEEecc-ceeEeeeeeccccccccCCCC
Q 044070 38 LKGSVVLQVAHGHLRSPTSNDVVFGKET------SIELVIIGEDG-IVQSVCEQAVFG-TIKDLAVVPWNKKFNAQNSQV 109 (903)
Q Consensus 38 ~~pt~V~~sl~g~f~~~~~~~LVv~k~~------~LeIy~~~~~g-~L~~v~~~~lfg-~I~~i~~~~~~~~~~~~~p~~ 109 (903)
++..+|.|+ +.|+.. .-|++.-.+ ...||+.+++| |...+.+.+..+ .|++|+=-|. -+
T Consensus 170 ~~~~CvsWn-~sr~~~---p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn---------~G 236 (361)
T KOG2445|consen 170 QPCFCVSWN-PSRMHE---PLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN---------IG 236 (361)
T ss_pred CcceEEeec-cccccC---ceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc---------cC
Confidence 445566666 566543 446666566 89999999998 888999998776 7888874431 35
Q ss_pred CCccEEEEEeCCCcEEEEEEe
Q 044070 110 MGKDLLVVISDSGKLSFLAFC 130 (903)
Q Consensus 110 ~~~D~Llv~tds~~l~iL~~d 130 (903)
..-++|.+.+.+| +=|....
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred CceeeEEEeecCc-EEEEEEe
Confidence 6667788888887 6555443
No 109
>PTZ00420 coronin; Provisional
Probab=43.26 E-value=6.9e+02 Score=30.37 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=18.5
Q ss_pred ceEEEEEecCCeEEEEEccCCCC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEG 727 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~ 727 (903)
..+|++++.|++|+||.+...+.
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcE
Confidence 45788888999999999876543
No 110
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=42.81 E-value=4.5e+02 Score=28.12 Aligned_cols=110 Identities=21% Similarity=0.332 Sum_probs=66.0
Q ss_pred CCeEEEEEeeCCeEEEEEeC---------CceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCc
Q 044070 437 GRFLSAFVEMGDGMVLKEEN---------GRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGIS 507 (903)
Q Consensus 437 ~~~lFvgS~~gds~L~~~~~---------~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~ 507 (903)
..+||+|+.+||-.++.++. ....++-....=|||.|+...| +++..+|- |-++ |..
T Consensus 22 ~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-------~~Lls~gd---G~V~----gw~ 87 (325)
T KOG0649|consen 22 KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-------DFLLSGGD---GLVY----GWE 87 (325)
T ss_pred ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-------hheeeccC---ceEE----Eee
Confidence 35799999999999999873 2345556677889999998764 34555554 5443 333
Q ss_pred eeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEeC-CccccccCcCCccCCC-CeEEEEeeCCCeEEEE
Q 044070 508 LEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVG-LNFTDVTDSVGFRPDV-CTLACGLVADGLLVQI 585 (903)
Q Consensus 508 ~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~~-~~~~e~~~~~~f~~~~-~Tl~a~~~~~~~ivQV 585 (903)
-.+... -.+.+.+|-++.+.. .+ -++-|++.. -++..+ .-|+|| +++.+-|+
T Consensus 88 W~E~~e----s~~~K~lwe~~~P~~-------------------~~~~evPeINam-~ldP~enSi~~Ag--GD~~~y~~ 141 (325)
T KOG0649|consen 88 WNEEEE----SLATKRLWEVKIPMQ-------------------VDAVEVPEINAM-WLDPSENSILFAG--GDGVIYQV 141 (325)
T ss_pred ehhhhh----hccchhhhhhcCccc-------------------cCcccCCcccee-EeccCCCcEEEec--CCeEEEEE
Confidence 333221 246788898765421 11 133444432 344334 345555 78888887
Q ss_pred E
Q 044070 586 H 586 (903)
Q Consensus 586 T 586 (903)
.
T Consensus 142 d 142 (325)
T KOG0649|consen 142 D 142 (325)
T ss_pred E
Confidence 4
No 111
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.06 E-value=1.1e+02 Score=34.86 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=64.8
Q ss_pred CCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeC--CCcEEEEEEeC
Q 044070 54 PTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISD--SGKLSFLAFCN 131 (903)
Q Consensus 54 ~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~td--s~~l~iL~~d~ 131 (903)
++..=|+-.+.+..+||.++ +| ..+.++..|+.=..++.+|+. ....++.|.|.+- .++.+.+ ||-
T Consensus 196 ~dgk~lasig~d~~~VW~~~-~g--~~~a~~t~~~k~~~~~~cRF~--------~d~~~~~l~laa~~~~~~~v~~-~~~ 263 (398)
T KOG0771|consen 196 PDGKFLASIGADSARVWSVN-TG--AALARKTPFSKDEMFSSCRFS--------VDNAQETLRLAASQFPGGGVRL-CDI 263 (398)
T ss_pred CCCcEEEEecCCceEEEEec-cC--chhhhcCCcccchhhhhceec--------ccCCCceEEEEEecCCCCceeE-EEe
Confidence 45555676777799999884 44 566666667766666666652 2232355555443 3333333 221
Q ss_pred CCc---ceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeec
Q 044070 132 EMH---RFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSM 183 (903)
Q Consensus 132 ~~~---~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~ 183 (903)
... .|-. ..+. ..+...-.-|+|+++|+.+||+..++..+||...+
T Consensus 264 ~~w~~~~~l~-----~~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~ 312 (398)
T KOG0771|consen 264 SLWSGSNFLR-----LRKK-IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS 312 (398)
T ss_pred eeeccccccc-----hhhh-hhccCcceeEEEcCCCcEEEEeccCCcEEEEEece
Confidence 100 1110 1011 11122234699999999999999999999997653
No 112
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=40.71 E-value=1.4e+02 Score=36.24 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=67.1
Q ss_pred eeEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEE-eeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCC
Q 044070 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYE-MQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPA 697 (903)
Q Consensus 619 ~~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~-~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~ 697 (903)
...++.++++.++++..+.|.+.+|.. +..+... .... -+..++.+++..+
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R------~~~~~~~~~~~~-~~~~~~~~~vs~~--------------------- 87 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNR------HTGEMRKLKNEG-ATGITCVRSVSSV--------------------- 87 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEec------CchhhhcccccC-ccceEEEEEecch---------------------
Confidence 446788889999999988886655421 1111111 1111 1223333444432
Q ss_pred CCCccccceEEEEEecCCeEEEEEccCCCC--eeEEEeeeeeecccCCCCCCCCCcceeEEeec--CccEEEEEecCCcE
Q 044070 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKEG--LRVLASGSIVLTNTMGTAISGCIPQDVRLVLA--DQFYVLAGLRNGML 773 (903)
Q Consensus 698 ~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~--l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~--~~~~L~vgl~~G~l 773 (903)
.+++|+|+..|.|.+|.+..... +..++. .. ...+..|.-..- +...|+.|-+.|.+
T Consensus 88 -------e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~---------~d---~~~~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 88 -------EYLVAAGTASGRVSVFQLNKELPRDLDYVTP---------CD---KSHKCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred -------hHhhhhhcCCceEEeehhhccCCCcceeecc---------cc---ccCCceEEEEEecccccEEeecCCCceE
Confidence 57899999999999998865211 111110 00 012334433322 46789999999999
Q ss_pred EEEEecC
Q 044070 774 LRFEWPP 780 (903)
Q Consensus 774 ~~~~~~~ 780 (903)
..-+++.
T Consensus 149 ~~~~L~s 155 (726)
T KOG3621|consen 149 VLTELDS 155 (726)
T ss_pred EEEEech
Confidence 9999885
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=38.68 E-value=4.9e+02 Score=28.67 Aligned_cols=112 Identities=14% Similarity=0.103 Sum_probs=73.7
Q ss_pred cCeEEE-EcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCCCcEEEEEEeCC--
Q 044070 56 SNDVVF-GKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNE-- 132 (903)
Q Consensus 56 ~~~LVv-~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d~~-- 132 (903)
.+.||| ..+..+.+|+++.-..-....+-.+-=.+|+++.++ ++.=-++++=+|++++=.+|+.
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-------------n~eGy~~sSieGRVavE~~d~s~~ 211 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-------------NGEGYVVSSIEGRVAVEYFDDSEE 211 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-------------CCCceEEEeecceEEEEccCCchH
Confidence 466777 568899999987433222222333223688888883 3344567788899999999987
Q ss_pred --CcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEe
Q 044070 133 --MHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSL 181 (903)
Q Consensus 133 --~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl 181 (903)
+.+|.- -.|.....+.....|-.-+++.|.....|-+.-+|...+.-+
T Consensus 212 ~~skkyaF-kCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 212 AQSKKYAF-KCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred HhhhceeE-EeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 444433 234444444445566667899999888888888887666544
No 114
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.64 E-value=4.4e+02 Score=30.42 Aligned_cols=78 Identities=6% Similarity=0.063 Sum_probs=51.2
Q ss_pred cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccC
Q 044070 663 RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTM 742 (903)
Q Consensus 663 ~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~ 742 (903)
....+|.|++..+.. ..+|..|+.|++|.++.+...+.. ... |. .
T Consensus 284 ~~~k~Vq~l~wh~~~---------------------------p~~LLsGs~D~~V~l~D~R~~~~s----~~~--wk--~ 328 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYE---------------------------PSVLLSGSYDGTVALKDCRDPSNS----GKE--WK--F 328 (463)
T ss_pred hcCCceeEEEecCCC---------------------------ceEEEeccccceEEeeeccCcccc----Cce--EE--e
Confidence 356888899887642 468889999999999987642210 000 10 0
Q ss_pred CCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 743 GTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 743 ~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
.++ + +.++.......+.+||+.||.|..|.+..
T Consensus 329 ~g~----V-Ekv~w~~~se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 329 DGE----V-EKVAWDPHSENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred ccc----e-EEEEecCCCceeEEEecCCceEEeeecCC
Confidence 011 2 34444444567899999999999998764
No 115
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.01 E-value=5.8e+02 Score=27.67 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred EcCcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEEec-CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeecc
Q 044070 586 HQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAVA-HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMR 663 (903)
Q Consensus 586 T~~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~~-~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~ 663 (903)
+...+..++.... ...|.. -|.+|.+.++. +++|+|.+.+| .+||... .+| .+.-.+.
T Consensus 31 Hs~~~~avd~~sG------------~~~We~ilg~RiE~sa~vvgdfVV~GCy~g-~lYfl~~---~tG----s~~w~f~ 90 (354)
T KOG4649|consen 31 HSGIVIAVDPQSG------------NLIWEAILGVRIECSAIVVGDFVVLGCYSG-GLYFLCV---KTG----SQIWNFV 90 (354)
T ss_pred CCceEEEecCCCC------------cEEeehhhCceeeeeeEEECCEEEEEEccC-cEEEEEe---cch----hheeeee
Q ss_pred CCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCC
Q 044070 664 LQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMG 743 (903)
Q Consensus 664 l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~ 743 (903)
...+|-|-+..... +..+-.|+.|++...+.......+ ++...+
T Consensus 91 ~~~~vk~~a~~d~~---------------------------~glIycgshd~~~yalD~~~~~cV---------ykskcg 134 (354)
T KOG4649|consen 91 ILETVKVRAQCDFD---------------------------GGLIYCGSHDGNFYALDPKTYGCV---------YKSKCG 134 (354)
T ss_pred ehhhhccceEEcCC---------------------------CceEEEecCCCcEEEecccccceE---------EecccC
Q ss_pred CCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 744 TAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 744 ~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
+....-. .+..+...|++..-.|.+++....+
T Consensus 135 G~~f~sP-----~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 135 GGTFVSP-----VIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred Cceeccc-----eecCCCceEEEEeccceEEEEccCC
No 116
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.99 E-value=3.2e+02 Score=32.90 Aligned_cols=62 Identities=5% Similarity=0.171 Sum_probs=41.1
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
.+|+..+.++|.|.||+-+...++..+..-.+ ..++..++. .+..+++|-.|+.+-.|..+.
T Consensus 25 ePw~la~LynG~V~IWnyetqtmVksfeV~~~-------------PvRa~kfia-RknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 25 EPWILAALYNGDVQIWNYETQTMVKSFEVSEV-------------PVRAAKFIA-RKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred CceEEEeeecCeeEEEecccceeeeeeeeccc-------------chhhheeee-ccceEEEecCCceEEEEeccc
Confidence 57999999999999999875443222211011 113333331 267899999999999998763
No 117
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=35.66 E-value=8.9e+02 Score=29.45 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=34.1
Q ss_pred ecceeeEEEEEEeCCCceEEEecCCC--eEEEEe-CCceEEEEeeecCCcccCCCCCCCCCCeEEEEecC
Q 044070 833 IGITPVFLVPLSDSLDADMIALSDRP--WLLQTA-RHSLAYTSISFQPSTHATPVCSVECPKGILFVAEN 899 (903)
Q Consensus 833 lG~~pv~l~~~~~~~~~~v~~~~~~p--~li~~~-~~~l~~~~l~~~~~~~~~~f~s~~~~~g~~~~~~~ 899 (903)
|-..|-.|.|+-..+.+.+|++|..- -.+|.- ...+++ .-+++|.+..--+|+++...+
T Consensus 810 lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~--------lpl~~f~sp~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 810 LDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYL--------LPLAPFMSPVGHQGLAFLQKL 871 (1012)
T ss_pred ecccCccccccccCCCceEEEecCCCceEEEEEecCCCcee--------eecccccCCCcccceeeeccc
Confidence 44455566666555666788886443 333332 222333 334567776666888887654
No 118
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.45 E-value=1.2e+02 Score=34.45 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=44.3
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecCCCC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSN 783 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~~~~ 783 (903)
..++.++..+++|.|+++..... ++..... ..+-|.+.-.-+.+++.+|+.+|.++.|.+...++
T Consensus 206 ~GLl~~asl~nkiki~dlet~~~---vssy~a~-----------~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 206 EGLLGLASLGNKIKIMDLETSCV---VSSYIAY-----------NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cceeeeeccCceEEEEeccccee---eeheecc-----------CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 34788888899999999875332 2111110 13345555544689999999999999999876544
No 119
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=33.43 E-value=2.5e+02 Score=35.39 Aligned_cols=98 Identities=10% Similarity=0.212 Sum_probs=57.1
Q ss_pred eEEE--EEcCcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEE-------ecCCEEEEEEeCCcEEEEEeEEecc
Q 044070 581 LLVQ--IHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGA-------VAHNMIIVSTSNPCFLFILGVRSLS 650 (903)
Q Consensus 581 ~ivQ--VT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As-------~~~~~vvva~~~~~il~~~~~~~~~ 650 (903)
+++| ..++.+..++.+. ++++.+|+. ....|..-+ ..+.+..+.++++.+... +.+.
T Consensus 495 mil~~~~~~~~ly~mDLe~----------GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfri-DpR~-- 561 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLER----------GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI-DPRL-- 561 (794)
T ss_pred eEeecCCCCCceEEEecCC----------CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEe-ccCC--
Confidence 4555 3455666666553 468999997 433343322 235677888877765432 2221
Q ss_pred ccceEEEEe--eeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEE
Q 044070 651 VSHYEIYEM--QHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLS 721 (903)
Q Consensus 651 ~g~~~L~~~--~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~s 721 (903)
.+ .++... ....-..+-+|++-.. ..++|||..+|.|++|+
T Consensus 562 ~~-~k~v~~~~k~Y~~~~~Fs~~aTt~-----------------------------~G~iavgs~~G~IRLyd 604 (794)
T PF08553_consen 562 SG-NKLVDSQSKQYSSKNNFSCFATTE-----------------------------DGYIAVGSNKGDIRLYD 604 (794)
T ss_pred CC-CceeeccccccccCCCceEEEecC-----------------------------CceEEEEeCCCcEEeec
Confidence 22 134331 2333345556776533 46999999999999996
No 120
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=33.37 E-value=6.7e+02 Score=27.32 Aligned_cols=129 Identities=13% Similarity=0.127 Sum_probs=74.1
Q ss_pred CCeEEEEEeeCCeEEEEEeCCceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCC
Q 044070 437 GRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAP 516 (903)
Q Consensus 437 ~~~lFvgS~~gds~L~~~~~~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~ 516 (903)
..+|-.||--+--.+++=.++.|+.+.+|.+.--=+....-. .....+|.|.++++==+=++..+=..+.++.+.+
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws----~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS----ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc----CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 345556665555566665566788888887643222222111 2356899999988777777776677777777765
Q ss_pred CCCCccEE-EEeeecCCCCcceEEE-EEecCceEEEEeC-CccccccCcCCccCCCCeEEEEeeC
Q 044070 517 IYQGITGT-WTVRMKVSDPYHSFLV-LSFVEETRVLRVG-LNFTDVTDSVGFRPDVCTLACGLVA 578 (903)
Q Consensus 517 ~~~~v~~i-Wtl~~~~~~~~~~~Lv-lS~~~~T~vl~~~-~~~~e~~~~~~f~~~~~Tl~a~~~~ 578 (903)
....|+.+ |- + ....|+ .||.+.=++++-. ++-=+... .+.-.+.|+.+-.+.
T Consensus 149 HtqDVK~V~WH-P------t~dlL~S~SYDnTIk~~~~~~dddW~c~~--tl~g~~~TVW~~~F~ 204 (312)
T KOG0645|consen 149 HTQDVKHVIWH-P------TEDLLFSCSYDNTIKVYRDEDDDDWECVQ--TLDGHENTVWSLAFD 204 (312)
T ss_pred ccccccEEEEc-C------CcceeEEeccCCeEEEEeecCCCCeeEEE--EecCccceEEEEEec
Confidence 66677765 53 1 123444 4576666787754 22111111 122233477776664
No 121
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=32.64 E-value=3.7e+02 Score=26.02 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=51.7
Q ss_pred EEEecCCCcCeEEEEc-CCEEEEEEecCCC-----cEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCC
Q 044070 48 HGHLRSPTSNDVVFGK-ETSIELVIIGEDG-----IVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDS 121 (903)
Q Consensus 48 ~g~f~~~~~~~LVv~k-~~~LeIy~~~~~g-----~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds 121 (903)
.|||-+. +..|+.+. ...|=||...+.+ +=..+...++.-.|++|++=|+. | ...+|.|+|.|.+
T Consensus 3 iGkfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~-------~-~~~~D~LliGt~t 73 (136)
T PF14781_consen 3 IGKFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLK-------P-DDGRDCLLIGTQT 73 (136)
T ss_pred EEEeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecC-------C-CCCcCEEEEeccc
Confidence 5788654 45777664 7788888765332 12345555555589999887762 3 6889999999985
Q ss_pred CcEEEEEEeCCCc
Q 044070 122 GKLSFLAFCNEMH 134 (903)
Q Consensus 122 ~~l~iL~~d~~~~ 134 (903)
.+|.||-+.+
T Consensus 74 ---~llaYDV~~N 83 (136)
T PF14781_consen 74 ---SLLAYDVENN 83 (136)
T ss_pred ---eEEEEEcccC
Confidence 5788886654
No 122
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=31.98 E-value=2.7e+02 Score=31.28 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=44.1
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
..+++.|.||++|++|.++-..+|-.+.. .++ =.+++++. -++-||+-...|+.|-.|.+..
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~g----------hdn---wVr~~af~-p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVG----------HDN---WVRGVAFS-PGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEec----------ccc---eeeeeEEc-CCCeEEEEEecCCcEEEEEecc
Confidence 57999999999999999986655433321 110 11444333 3578999999999999999864
No 123
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.81 E-value=77 Score=35.13 Aligned_cols=57 Identities=18% Similarity=0.326 Sum_probs=40.4
Q ss_pred eeeecceeeEEEEEEeC-CCceEEEecCCCeEEEEeCCceEEEE-eeecCCcccCCCCCC
Q 044070 830 TRRIGITPVFLVPLSDS-LDADMIALSDRPWLLQTARHSLAYTS-ISFQPSTHATPVCSV 887 (903)
Q Consensus 830 ~~~lG~~pv~l~~~~~~-~~~~v~~~~~~p~li~~~~~~l~~~~-l~~~~~~~~~~f~s~ 887 (903)
+--+|.+...++-++.+ .-+.||++|+|.+++...+|.+++.. +.. .-.++-||++.
T Consensus 193 tlnigeqaldicivsfnqsassvfvlgernffclkdngqirfmkrldw-spscflpycsv 251 (802)
T KOG3679|consen 193 TLNIGEQALDICIVSFNQSASSVFVLGERNFFCLKDNGQIRFMKRLDW-SPSCFLPYCSV 251 (802)
T ss_pred eeccChhhheEEEEEeccccceEEEEeccceEEEccCCEEEEeeccCC-Ccccccccccc
Confidence 34578888787777644 45689999999999999999998864 222 22345566553
No 124
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=31.06 E-value=3.8e+02 Score=28.78 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=47.1
Q ss_pred EEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeee
Q 044070 657 YEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSI 736 (903)
Q Consensus 657 ~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l 736 (903)
+++++.++...|+++.+.+. ..+|.+ .+.++|..|+.+..+.| -...
T Consensus 176 t~v~sL~~~s~VtSlEvs~d----------------------------G~ilTi-a~gssV~Fwdaksf~~l---Ks~k- 222 (334)
T KOG0278|consen 176 TEVQSLEFNSPVTSLEVSQD----------------------------GRILTI-AYGSSVKFWDAKSFGLL---KSYK- 222 (334)
T ss_pred cEEEEEecCCCCcceeeccC----------------------------CCEEEE-ecCceeEEeccccccce---eecc-
Confidence 45677788888888887652 345543 34567888876654443 2222
Q ss_pred eecccCCCCCCCCCcceeEEeec--CccEEEEEecCCcEEEEEec
Q 044070 737 VLTNTMGTAISGCIPQDVRLVLA--DQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 737 ~~~~~~~~~~s~~~p~si~l~~~--~~~~L~vgl~~G~l~~~~~~ 779 (903)
+|..|.-+.+ .+..+++|=.|+.+++|..+
T Consensus 223 -------------~P~nV~SASL~P~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 223 -------------MPCNVESASLHPKKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred -------------CccccccccccCCCceEEecCcceEEEEEecc
Confidence 2333322333 34678899998888777665
No 125
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=30.97 E-value=5e+02 Score=25.17 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=54.0
Q ss_pred cCCceeEEEEEEecCCCcCe-EEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEE
Q 044070 39 KGSVVLQVAHGHLRSPTSND-VVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVV 117 (903)
Q Consensus 39 ~pt~V~~sl~g~f~~~~~~~-LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv 117 (903)
=...|+....|+|...+..| |++...+.|..|.+.++- .+..+.+-.=+.+|..=++ ...+..++++
T Consensus 46 in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~---d~Fyke~~DGvn~i~~g~~---------~~~~~~l~iv 113 (136)
T PF14781_consen 46 INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNS---DLFYKEVPDGVNAIVIGKL---------GDIPSPLVIV 113 (136)
T ss_pred CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCc---hhhhhhCccceeEEEEEec---------CCCCCcEEEE
Confidence 46788889999998666666 566779999999997552 2233333332222221111 2234455555
Q ss_pred EeCCCcEEEEEEeCCCcc-eEee
Q 044070 118 ISDSGKLSFLAFCNEMHR-FFPV 139 (903)
Q Consensus 118 ~tds~~l~iL~~d~~~~~-f~tv 139 (903)
-|+++|..||.+-.+ |-|+
T Consensus 114 ---GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 114 ---GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ---CceEEEEEeCCCCcEEEEEe
Confidence 599999999987655 5443
No 126
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=30.38 E-value=1.7e+02 Score=35.00 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=22.0
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEE
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVL 731 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~ 731 (903)
..|||-|..||+|+||-+....++..+
T Consensus 412 G~wlasGsdDGtvriWEi~TgRcvr~~ 438 (733)
T KOG0650|consen 412 GEWLASGSDDGTVRIWEIATGRCVRTV 438 (733)
T ss_pred cceeeecCCCCcEEEEEeecceEEEEE
Confidence 579999999999999998766655443
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.88 E-value=3e+02 Score=33.98 Aligned_cols=161 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred EEEEEEecCCCcCeEEEEcCCEEEEEEecCCCc-EEEEEE-EEeccceeEeeeeeccccccccCCCCCCccEEEEEeCCC
Q 044070 45 QVAHGHLRSPTSNDVVFGKETSIELVIIGEDGI-VQSVCE-QAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSG 122 (903)
Q Consensus 45 ~sl~g~f~~~~~~~LVv~k~~~LeIy~~~~~g~-L~~v~~-~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~ 122 (903)
.|+.++ ++.++||+|+.+.|.||.+.+++. +.+..+ ..--..-.+++-+.+ ...-..+|+.+.-+|
T Consensus 43 nAIs~n---r~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW---------~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 43 NAISVN---RDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKW---------GQLYSNLIATCSTNG 110 (839)
T ss_pred ceEeec---CCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhccc---------ccchhhhheeecCCC
Q ss_pred cEEEEEEeC--CCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeecCCCCccccccccCCCCc
Q 044070 123 KLSFLAFCN--EMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPSES 200 (903)
Q Consensus 123 ~l~iL~~d~--~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~~~~~~~~~~~~~sP~~~ 200 (903)
.+++.-.+. ....+.....|.-.-.-.-....-+++.+. +.-++.++++-++..
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliS--------GSQDg~vK~~DlR~~---------------- 166 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILIS--------GSQDGTVKCWDLRSK---------------- 166 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEe--------cCCCceEEEEeeecc----------------
Q ss_pred cccCcccceeeecccccc-EEEEEEeeCCCCCCCCCCCcEEEEEEeecCCccceEEEEEEEccC
Q 044070 201 EVDTSASRIAQKNSISGT-IWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIRE 263 (903)
Q Consensus 201 e~~~s~~~~~~~~~~~~~-i~dm~FL~~~~~~~~~~~~PtlavL~~~~~~~~~~l~~y~ldl~~ 263 (903)
++.+...++.. |.|++|..+ +++ .|+..+.. =++-.||+..
T Consensus 167 -------~S~~t~~~nSESiRDV~fsp~-------~~~-~F~s~~ds-------G~lqlWDlRq 208 (839)
T KOG0269|consen 167 -------KSKSTFRSNSESIRDVKFSPG-------YGN-KFASIHDS-------GYLQLWDLRQ 208 (839)
T ss_pred -------cccccccccchhhhceeeccC-------CCc-eEEEecCC-------ceEEEeeccC
No 128
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=29.21 E-value=6e+02 Score=32.46 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=66.4
Q ss_pred EEEEEecCCCcCeEEEEc-CCEEEEEEecCCCcEEEEEEEEeccc------eeEeeeeecccccc-c-cCCCCCCccEEE
Q 044070 46 VAHGHLRSPTSNDVVFGK-ETSIELVIIGEDGIVQSVCEQAVFGT------IKDLAVVPWNKKFN-A-QNSQVMGKDLLV 116 (903)
Q Consensus 46 sl~g~f~~~~~~~LVv~k-~~~LeIy~~~~~g~L~~v~~~~lfg~------I~~i~~~~~~~~~~-~-~~p~~~~~D~Ll 116 (903)
++.|.+.+++-..|+... +..++||+..+- -....||. +...+++....... + ..- ...+|--+
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~------~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv-~Wsp~~~~ 143 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEI------GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV-NWSPDDSL 143 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeeccc------CCcccccccccccccceeeEEEEEecCCCcccee-ccCCCccE
Confidence 456665667788888876 456688987531 12233332 12222211100000 0 000 12223344
Q ss_pred EEeCCCcEEEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEe
Q 044070 117 VISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSL 181 (903)
Q Consensus 117 v~tds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl 181 (903)
+.+-+..-.++-||..+.+..++-..+- +. .- =+..||-|+++|--.-++.++|+-.
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~---s~---VK--Gvs~DP~Gky~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQ---SL---VK--GVSWDPIGKYFASQSDDRTLKVWRT 200 (942)
T ss_pred EEEecccceEEEEccccceeeeeeeccc---cc---cc--ceEECCccCeeeeecCCceEEEEEc
Confidence 4566677778888877755444321111 11 11 2899999999999999999999864
No 129
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=28.33 E-value=8.3e+02 Score=26.89 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=39.4
Q ss_pred eEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEE
Q 044070 706 YTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFE 777 (903)
Q Consensus 706 ~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~ 777 (903)
.-++.|..|++.++|.|..+..+.+.+..... .--.|+.+...| -+||+|..|.....+.
T Consensus 242 ~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~-----------~gitSv~FS~SG-RlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 242 DAFATGSDDATCRLYDLRADQELAVYSHDSII-----------CGITSVAFSKSG-RLLFAGYDDFTCNVWD 301 (343)
T ss_pred CeeeecCCCceeEEEeecCCcEEeeeccCccc-----------CCceeEEEcccc-cEEEeeecCCceeEee
Confidence 45677888999999999876655444321110 012566665444 4599999999987664
No 130
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.29 E-value=4.5e+02 Score=30.15 Aligned_cols=122 Identities=8% Similarity=0.138 Sum_probs=66.5
Q ss_pred eeeeEec-CCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCC
Q 044070 610 VCTSWFP-EHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSP 686 (903)
Q Consensus 610 ~~~~w~~-~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~ 686 (903)
....|.. ...++...++. |.++++...+..+-.+-... ..+......+..|+.++++..
T Consensus 345 ~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~--------~~dr~lise~~~its~~iS~d---------- 406 (519)
T KOG0293|consen 345 ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA--------RVDRGLISEEQPITSFSISKD---------- 406 (519)
T ss_pred hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhh--------hhhhccccccCceeEEEEcCC----------
Confidence 4567874 33345555544 55776666666655442110 111223345677888887652
Q ss_pred ccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEE
Q 044070 687 ISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLA 766 (903)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~v 766 (903)
+.++.|-..+.++++|.+.+...+... .|..++..+-+|- +...+..++.-
T Consensus 407 ------------------~k~~LvnL~~qei~LWDl~e~~lv~kY----------~Ghkq~~fiIrSC-Fgg~~~~fiaS 457 (519)
T KOG0293|consen 407 ------------------GKLALVNLQDQEIHLWDLEENKLVRKY----------FGHKQGHFIIRSC-FGGGNDKFIAS 457 (519)
T ss_pred ------------------CcEEEEEcccCeeEEeecchhhHHHHh----------hcccccceEEEec-cCCCCcceEEe
Confidence 568888889999999999865432111 1111111111111 11112366778
Q ss_pred EecCCcEEEEEe
Q 044070 767 GLRNGMLLRFEW 778 (903)
Q Consensus 767 gl~~G~l~~~~~ 778 (903)
|-.|+.++.+..
T Consensus 458 GSED~kvyIWhr 469 (519)
T KOG0293|consen 458 GSEDSKVYIWHR 469 (519)
T ss_pred cCCCceEEEEEc
Confidence 889999877664
No 131
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=28.14 E-value=91 Score=20.15 Aligned_cols=16 Identities=0% Similarity=0.090 Sum_probs=13.1
Q ss_pred eEEEEEecCCeEEEEE
Q 044070 706 YTFVIGTHRPSVEVLS 721 (903)
Q Consensus 706 ~~l~vg~~d~~v~i~s 721 (903)
.+++.|..|+.+++|.
T Consensus 25 ~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 25 KYLASASDDGTIKLWD 40 (40)
T ss_pred CEEEEecCCCeEEEcC
Confidence 5788888999998873
No 132
>PRK12784 hypothetical protein; Provisional
Probab=27.48 E-value=2.2e+02 Score=24.70 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=35.7
Q ss_pred eEEEEeCCCCEEEEEEEeCCCccEEE-EceeccC-CCCcceEEEECCCeEEEEEe
Q 044070 393 KMVFCVDTGEFFMIEIAFGSDGHKVH-LSECLYK-GPPCKALLWVEGRFLSAFVE 445 (903)
Q Consensus 393 ~~LL~~e~G~l~~l~l~~~~~~~~v~-~~~~~~~-~~~~ssl~~l~~~~lFvgS~ 445 (903)
.+++-+.||.+-.+.+...|. +. +....|+ +..-+-|.++.++++.-|++
T Consensus 33 L~~I~~~dg~le~v~vGiSG~---I~~v~Ve~Gq~i~~dtlL~~~edDllitG~~ 84 (84)
T PRK12784 33 LMMIRKNNGELEKVAVGISGN---IRLVNVVVGQQIHTDTLLVRLEDDLLITGCE 84 (84)
T ss_pred eeEEeecCCcEEEEEEeeeee---EEEEEeecCceecCCcEEEEEeeceEeecCC
Confidence 378889999999999887664 22 2223444 55567788999999887764
No 133
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=27.26 E-value=9.4e+02 Score=27.25 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=63.2
Q ss_pred EEEEEecCCEEEEEEeCCc-EEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCC
Q 044070 621 ISLGAVAHNMIIVSTSNPC-FLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALP 699 (903)
Q Consensus 621 I~~As~~~~~vvva~~~~~-il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~ 699 (903)
+=+++++.+.=++++.++. +-|+-.. .+|. .+- .-......|+|+++...
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~---~~ge-~~~--eltgHKDSVt~~~Fshd----------------------- 117 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDI---STGE-FAG--ELTGHKDSVTCCSFSHD----------------------- 117 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEc---cCCc-cee--EecCCCCceEEEEEccC-----------------------
Confidence 4455555444455555554 4444333 1331 122 22344577999988652
Q ss_pred CccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEee--cCccEEEEEecCCcEEEEE
Q 044070 700 AGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVL--ADQFYVLAGLRNGMLLRFE 777 (903)
Q Consensus 700 ~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~--~~~~~L~vgl~~G~l~~~~ 777 (903)
+.+||.|.-+|.|+||..........+. +. . ..|.=.. -..+.|++|..||.+..|+
T Consensus 118 -----gtlLATGdmsG~v~v~~~stg~~~~~~~-~e--------------~-~dieWl~WHp~a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 118 -----GTLLATGDMSGKVLVFKVSTGGEQWKLD-QE--------------V-EDIEWLKWHPRAHILLAGSTDGSVWMWQ 176 (399)
T ss_pred -----ceEEEecCCCccEEEEEcccCceEEEee-cc--------------c-CceEEEEecccccEEEeecCCCcEEEEE
Confidence 5799999889999999876543211110 00 0 1111110 1246799999999999999
Q ss_pred ecC
Q 044070 778 WPP 780 (903)
Q Consensus 778 ~~~ 780 (903)
++.
T Consensus 177 ip~ 179 (399)
T KOG0296|consen 177 IPS 179 (399)
T ss_pred CCC
Confidence 875
No 134
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=27.01 E-value=9.4e+02 Score=27.04 Aligned_cols=194 Identities=10% Similarity=0.095 Sum_probs=97.1
Q ss_pred cceEEEEEecCceE-EEEeCC--ccccccCcCCccCCCCeEEEEeeCCCeEEEEEc-CcEEEEccCcccccCCCCCCCCe
Q 044070 535 YHSFLVLSFVEETR-VLRVGL--NFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQ-NAVRLCMPTMVAHSGGIPLSYPV 610 (903)
Q Consensus 535 ~~~~LvlS~~~~T~-vl~~~~--~~~e~~~~~~f~~~~~Tl~a~~~~~~~ivQVT~-~~irl~~~~~~~~~~~~~~~~~~ 610 (903)
+...+.++..+.+. +|..+. -++|..-..+-... +=+++.=+...++=-+. ..||+.+.-.+. ...
T Consensus 39 ~e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~--vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~--------e~a 108 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNG--VRFISCDSPHGVISCSSDGTVRLWDIRSQA--------ESA 108 (376)
T ss_pred cceeEEEEecCCeEEEEeccchhhhheecCCCCcccc--eEEecCCCCCeeEEeccCCeEEEEEeecch--------hhh
Confidence 34568888888775 554422 35554432121111 11111101112333333 378888754331 123
Q ss_pred eeeEec-CCeeEEEEEe--cCCEEEEEEe---CCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCC
Q 044070 611 CTSWFP-EHVSISLGAV--AHNMIIVSTS---NPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSS 684 (903)
Q Consensus 611 ~~~w~~-~~~~I~~As~--~~~~vvva~~---~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~ 684 (903)
...|.. ++..-++-+. ++++++.-+. ....++|-+.+. . .++...-.-...+.|+||.+.+..
T Consensus 109 ~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~--~--qq~l~~~~eSH~DDVT~lrFHP~~------- 177 (376)
T KOG1188|consen 109 RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRS--E--QQLLRQLNESHNDDVTQLRFHPSD------- 177 (376)
T ss_pred heeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecc--c--cchhhhhhhhccCcceeEEecCCC-------
Confidence 456654 3333333333 3444433221 122445544431 1 121111112345789999986632
Q ss_pred CCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec-Cc--
Q 044070 685 SPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA-DQ-- 761 (903)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~-~~-- 761 (903)
-..|+-|.-||-|.||.+...+.= .++. .... .-.||..+.. +.
T Consensus 178 --------------------pnlLlSGSvDGLvnlfD~~~d~Ee-----DaL~--~viN------~~sSI~~igw~~~~y 224 (376)
T KOG1188|consen 178 --------------------PNLLLSGSVDGLVNLFDTKKDNEE-----DALL--HVIN------HGSSIHLIGWLSKKY 224 (376)
T ss_pred --------------------CCeEEeecccceEEeeecCCCcch-----hhHH--Hhhc------ccceeeeeeeecCCc
Confidence 468889999999999998764310 0000 0000 1135555543 22
Q ss_pred cEEEEEecCCcEEEEEecCCC
Q 044070 762 FYVLAGLRNGMLLRFEWPPDS 782 (903)
Q Consensus 762 ~~L~vgl~~G~l~~~~~~~~~ 782 (903)
-.++|.+..+.+..|++...+
T Consensus 225 krI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 225 KRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ceEEEEEccCceeEEEccCCC
Confidence 359999999999999997644
No 135
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=25.47 E-value=9.8e+02 Score=26.77 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred cccceEEeecCCCCCCeEEEEeeCCC--------CCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEE
Q 044070 470 PILDMSVVDYHDEKRDQMFACCGVAP--------EGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVL 541 (903)
Q Consensus 470 PI~D~~v~~~~~~~~~~lva~sG~g~--------~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~Lvl 541 (903)
||.+.++-.....+++++++..|... +|.++.++.=...+.--++. +..|+.
T Consensus 40 ~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfy------tcsw~y-------------- 99 (385)
T KOG1034|consen 40 PIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFY------TCSWSY-------------- 99 (385)
T ss_pred ccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceE------EEEEEe--------------
Q ss_pred EecCceEEEEeCCccccccCcCCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeE
Q 044070 542 SFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSI 621 (903)
Q Consensus 542 S~~~~T~vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I 621 (903)
+-.+..+-+++|-. ..-||+++..+.+ ........|..|
T Consensus 100 ----------------------d~~~~~p~la~~G~---------~GvIrVid~~~~~----------~~~~~~ghG~sI 138 (385)
T KOG1034|consen 100 ----------------------DSNTGNPFLAAGGY---------LGVIRVIDVVSGQ----------CSKNYRGHGGSI 138 (385)
T ss_pred ----------------------cCCCCCeeEEeecc---------eeEEEEEecchhh----------hccceeccCccc
Q ss_pred EEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCC
Q 044070 622 SLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALP 699 (903)
Q Consensus 622 ~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~ 699 (903)
..--.. .+|++|+.+..+-+-+-.+ +++..-.+--.-.-..+||-++++...
T Consensus 139 Neik~~p~~~qlvls~SkD~svRlwnI---~~~~Cv~VfGG~egHrdeVLSvD~~~~----------------------- 192 (385)
T KOG1034|consen 139 NEIKFHPDRPQLVLSASKDHSVRLWNI---QTDVCVAVFGGVEGHRDEVLSVDFSLD----------------------- 192 (385)
T ss_pred hhhhcCCCCCcEEEEecCCceEEEEec---cCCeEEEEecccccccCcEEEEEEcCC-----------------------
Q ss_pred CccccceEEEEEecCCeEEEEEcc
Q 044070 700 AGVIIGYTFVIGTHRPSVEVLSFV 723 (903)
Q Consensus 700 ~~~~~~~~l~vg~~d~~v~i~sl~ 723 (903)
..+++-+.-|.+|.+|.|+
T Consensus 193 -----gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 193 -----GDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred -----CCeeeccCCcceEEEEecC
No 136
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=24.46 E-value=1.5e+02 Score=22.99 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=27.4
Q ss_pred EEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCCCcEEEEEEe
Q 044070 78 VQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFC 130 (903)
Q Consensus 78 L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d 130 (903)
++.+.++.+-..|..+.=. | ..|+|.+++++|.+.+-+++
T Consensus 2 f~~~~~k~l~~~v~~~~w~----------P---~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWC----------P---TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cceecccCCCCcEEEEEEC----------C---CCCEEEEEECCCeEEEEECC
Confidence 3455556655565543322 2 46999999999999988875
No 137
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=9.9e+02 Score=26.41 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=38.6
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..++.+++..+.+.++.--+...+..++. . ..+..+|-+..+.+ +..+++.|-.||.+..|.+.
T Consensus 199 GK~iLlsT~~s~~~~lDAf~G~~~~tfs~-----~-----~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 199 GKSILLSTNASFIYLLDAFDGTVKSTFSG-----Y-----PNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred CCEEEEEeCCCcEEEEEccCCcEeeeEee-----c-----cCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcC
Confidence 56888899888888876444332222211 0 01112443333322 46789999999999999984
No 138
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=23.32 E-value=3.4e+02 Score=32.56 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=20.9
Q ss_pred ceEEEEEecCCeEEEEEccCCCCe
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGL 728 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l 728 (903)
..+|++.+.|++|++|++....++
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCeEE
Confidence 568999999999999999887754
No 139
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=23.20 E-value=6.9e+02 Score=31.57 Aligned_cols=49 Identities=10% Similarity=0.016 Sum_probs=31.4
Q ss_pred eEEEE-EecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccC
Q 044070 620 SISLG-AVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQ 675 (903)
Q Consensus 620 ~I~~A-s~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~ 675 (903)
...++ +..+.+|+|+...|.|-+|-.. | .+ ....-..++..|.+|++..
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~-----g-~~-AKT~lp~lG~pI~~iDvt~ 628 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKGDIRLYDRL-----G-KR-AKTALPGLGDPIIGIDVTA 628 (794)
T ss_pred CceEEEecCCceEEEEeCCCcEEeeccc-----c-hh-hhhcCCCCCCCeeEEEecC
Confidence 34454 4447899999999998887322 1 01 1112236688999999876
No 140
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.79 E-value=9.7e+02 Score=29.60 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred EEEEEEecCCCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCCCcE
Q 044070 45 QVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKL 124 (903)
Q Consensus 45 ~sl~g~f~~~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l 124 (903)
+....-|...+..-|-+.|+..+-||++ -+-+.....|+|..+.+...++ .+.+.--..+.|..+.=
T Consensus 194 ~vtsL~~~~d~~~~ls~~RDkvi~vwd~---~~~~~l~~lp~ye~~E~vv~l~----------~~~~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 194 AVTSLAFSEDSLELLSVGRDKVIIVWDL---VQYKKLKTLPLYESLESVVRLR----------EELGGKGEYIITAGGSG 260 (775)
T ss_pred heeeeeeccCCceEEEeccCcEEEEeeh---hhhhhhheechhhheeeEEEec----------hhcCCcceEEEEecCCc
Q ss_pred EEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeecCCCCccccccccCCCCccccC
Q 044070 125 SFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPSESEVDT 204 (903)
Q Consensus 125 ~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~~~~~~~~~~~~~sP~~~e~~~ 204 (903)
.+-.||.+..+.......+- -.....-+++--.++.+++.+ |.++.+|-.+ ++++.+-+
T Consensus 261 ~~~~~d~es~~~~~~~~~~~------~~e~~~~~~~~~~~~~l~vta-eQnl~l~d~~--------~l~i~k~i------ 319 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSD------SEEIDHLLAIESMSQLLLVTA-EQNLFLYDED--------ELTIVKQI------ 319 (775)
T ss_pred eEEEEecccchhhhhhccCC------chhhhcceeccccCceEEEEc-cceEEEEEcc--------ccEEehhh------
Q ss_pred cccceeeeccccccEEEEEEeeCCCCCCCCCCCcEEEEEEeecCCccceEEEEEE
Q 044070 205 SASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGW 259 (903)
Q Consensus 205 s~~~~~~~~~~~~~i~dm~FL~~~~~~~~~~~~PtlavL~~~~~~~~~~l~~y~l 259 (903)
---+..|.||+||.+ ++--+|+- ++..++.+|++
T Consensus 320 --------vG~ndEI~Dm~~lG~--------e~~~laVA-----TNs~~lr~y~~ 353 (775)
T KOG0319|consen 320 --------VGYNDEILDMKFLGP--------EESHLAVA-----TNSPELRLYTL 353 (775)
T ss_pred --------cCCchhheeeeecCC--------ccceEEEE-----eCCCceEEEec
No 141
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.57 E-value=1.2e+03 Score=26.82 Aligned_cols=96 Identities=13% Similarity=0.134 Sum_probs=63.3
Q ss_pred EEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCCCcEEEEEEeCCCcceEeeEEEEec
Q 044070 66 SIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLS 145 (903)
Q Consensus 66 ~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d~~~~~f~tv~~~~~~ 145 (903)
.|+.|.+... ..+.+.++.|.|+++.... .. -.|+.++.+..+.+.-. .+.++ .++|.
T Consensus 323 kvRfwD~Rs~---~~~~sv~~gg~vtSl~ls~------------~g-~~lLsssRDdtl~viDl--Rt~eI----~~~~s 380 (459)
T KOG0288|consen 323 KVRFWDIRSA---DKTRSVPLGGRVTSLDLSM------------DG-LELLSSSRDDTLKVIDL--RTKEI----RQTFS 380 (459)
T ss_pred ceEEEeccCC---ceeeEeecCcceeeEeecc------------CC-eEEeeecCCCceeeeec--ccccE----EEEee
Confidence 3666665422 5678899999999988652 22 33445577777766533 22222 35566
Q ss_pred CCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeec
Q 044070 146 NPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSM 183 (903)
Q Consensus 146 ~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~ 183 (903)
..|.+-...-......|.++|+|-+..++.+.|.....
T Consensus 381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred ccccccccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence 55554333334678899999999999999998877654
No 142
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=21.81 E-value=1.3e+03 Score=26.74 Aligned_cols=60 Identities=10% Similarity=0.285 Sum_probs=35.5
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEE
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFE 777 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~ 777 (903)
.+.+|.|..|++++||.|..-+.+-.+ + +.. .+...+.+.+-.+.+|+-+--|+.+-.|.
T Consensus 357 Gy~lATgs~Dnt~kVWDLR~r~~ly~i-----p-----AH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 357 GYHLATGSSDNTCKVWDLRMRSELYTI-----P-----AHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred ceEEeecCCCCcEEEeeecccccceec-----c-----ccc---chhhheEecccCCeEEEEcccCcceeeec
Confidence 678999999999999999764433211 1 000 01235555543455666666666665553
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.62 E-value=7.6e+02 Score=28.62 Aligned_cols=83 Identities=13% Similarity=0.126 Sum_probs=48.9
Q ss_pred eeeeEecCCeeEEEEEec--CC-EEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCC
Q 044070 610 VCTSWFPEHVSISLGAVA--HN-MIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSP 686 (903)
Q Consensus 610 ~~~~w~~~~~~I~~As~~--~~-~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~ 686 (903)
....|+..| .|...+.+ .. ..++.+.+|.+-|| +.+ +.| +..- .-...+.+|++|++....
T Consensus 322 s~~~wk~~g-~VEkv~w~~~se~~f~~~tddG~v~~~-D~R--~~~--~~vw-t~~AHd~~ISgl~~n~~~--------- 385 (463)
T KOG0270|consen 322 SGKEWKFDG-EVEKVAWDPHSENSFFVSTDDGTVYYF-DIR--NPG--KPVW-TLKAHDDEISGLSVNIQT--------- 385 (463)
T ss_pred cCceEEecc-ceEEEEecCCCceeEEEecCCceEEee-ecC--CCC--Ccee-EEEeccCCcceEEecCCC---------
Confidence 346787622 24444443 33 44555666766665 332 122 1111 122447899999986532
Q ss_pred ccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCC
Q 044070 687 ISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKE 726 (903)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~ 726 (903)
-.+++.+..|++|.+|+++..+
T Consensus 386 ------------------p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 386 ------------------PGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred ------------------CcceeeccccceEEEEeecCCC
Confidence 3577788889999999998654
No 144
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.39 E-value=6.7e+02 Score=29.14 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=63.3
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCC---------CcceEEEE-CCCeEEEEEeeCCeEEEEEeCC--c
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGP---------PCKALLWV-EGRFLSAFVEMGDGMVLKEENG--R 458 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~---------~~ssl~~l-~~~~lFvgS~~gds~L~~~~~~--~ 458 (903)
.+.++.+.++|.+++..+..-.- + .+.....+..+ =-+++..+ +.+++-.||-.|.=-||+++++ .
T Consensus 338 ~~HfvsGSdnG~IaLWs~~KKkp-l-f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 338 DEHFVSGSDNGSIALWSLLKKKP-L-FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred ccceeeccCCceEEEeeecccCc-e-eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 67899999999999988764321 0 00111111111 12455555 4678888888899999999864 4
Q ss_pred eEEeeeecccccccceEEeecCCCCCCeEEEEeeCCC
Q 044070 459 LVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAP 495 (903)
Q Consensus 459 ~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~ 495 (903)
+.++..++=-|=|..+++...+ ..||+.+|.-+
T Consensus 416 i~~l~~ls~~GfVNsl~f~~sg----k~ivagiGkEh 448 (479)
T KOG0299|consen 416 INLLYSLSLVGFVNSLAFSNSG----KRIVAGIGKEH 448 (479)
T ss_pred cceeeecccccEEEEEEEccCC----CEEEEeccccc
Confidence 6777777766667777655422 36888777543
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.94 E-value=1.2e+03 Score=25.99 Aligned_cols=120 Identities=12% Similarity=0.091 Sum_probs=64.0
Q ss_pred CccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec---CCEE-EEEEeCCc
Q 044070 564 GFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA---HNMI-IVSTSNPC 639 (903)
Q Consensus 564 ~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~---~~~v-vva~~~~~ 639 (903)
.|+.-.+-++.+.. .+.|.+.+.+... + .-.....|+..+..|....-. -.|| +.+..+++
T Consensus 20 s~D~~GRRmAtCSs---------Dq~vkI~d~~~~s--~----~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 20 SFDFYGRRMATCSS---------DQTVKIWDSTSDS--G----TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred eecccCceeeeccC---------CCcEEEEeccCCC--C----ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 55555666666654 2456666632211 1 134667888733345544433 3344 44445677
Q ss_pred EEEEEeEEecccc-ceEEEEe-eeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeE
Q 044070 640 FLFILGVRSLSVS-HYEIYEM-QHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSV 717 (903)
Q Consensus 640 il~~~~~~~~~~g-~~~L~~~-~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v 717 (903)
+.+.|..+.+... ..+.++. ...+-...|+-+.+.+.. .+..+|.+..||.|
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h--------------------------lGLklA~~~aDG~l 138 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH--------------------------LGLKLAAASADGIL 138 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchh--------------------------cceEEEEeccCcEE
Confidence 7666553211111 1123321 222334667777776643 25577777779999
Q ss_pred EEEEccC
Q 044070 718 EVLSFVP 724 (903)
Q Consensus 718 ~i~sl~~ 724 (903)
+||..++
T Consensus 139 RIYEA~d 145 (361)
T KOG2445|consen 139 RIYEAPD 145 (361)
T ss_pred EEEecCC
Confidence 9998875
No 146
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=20.26 E-value=71 Score=34.74 Aligned_cols=31 Identities=13% Similarity=0.472 Sum_probs=25.4
Q ss_pred cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEE
Q 044070 663 RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLS 721 (903)
Q Consensus 663 ~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~s 721 (903)
-.++.|+||.+.+. ..-++.|.||.+|+||+
T Consensus 313 GHeNRvScl~~s~D----------------------------G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 313 GHENRVSCLGVSPD----------------------------GMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCeeEEEEECCC----------------------------CcEEEecchhHheeecC
Confidence 45688999999873 45788999999999984
No 147
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=20.01 E-value=1.4e+03 Score=26.37 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=34.4
Q ss_pred EEEEEEeCCCceEEEecCCCeEEEEeCCceEEEEeeecC--CcccCCCCCCCCCCeEEEEe
Q 044070 839 FLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQP--STHATPVCSVECPKGILFVA 897 (903)
Q Consensus 839 ~l~~~~~~~~~~v~~~~~~p~li~~~~~~l~~~~l~~~~--~~~~~~f~s~~~~~g~~~~~ 897 (903)
.|.||-..+.+-|.+||. -++.++|+-++-+. +..++.|.+.+-..|+-+.-
T Consensus 266 vl~PFyD~dt~ivYl~GK-------GD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 266 VLLPFYDPDTSIVYLCGK-------GDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP 319 (472)
T ss_pred eEEeeecCCCCEEEEEec-------CCcceEEEEecCCCceeEEecccccCCccccccccc
Confidence 344554444444444442 26779999999886 78899999988667776653
Done!