Query 044070
Match_columns 903
No_of_seqs 189 out of 626
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:28:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 100.0 3E-104 1E-108 1004.8 90.0 680 30-903 20-719 (1158)
2 1pgu_A Actin interacting prote 97.8 0.12 4.1E-06 60.0 47.7 123 618-779 488-613 (615)
3 3v7d_B Cell division control p 96.7 1.1 3.6E-05 50.2 32.5 299 391-779 132-462 (464)
4 3ow8_A WD repeat-containing pr 96.5 0.88 3E-05 48.6 26.8 260 437-778 48-319 (321)
5 4h5i_A Guanine nucleotide-exch 96.4 0.29 9.8E-06 53.7 22.6 43 436-478 144-186 (365)
6 1gxr_A ESG1, transducin-like e 96.4 1.2 4.2E-05 46.6 31.4 264 428-778 53-335 (337)
7 3i2n_A WD repeat-containing pr 96.3 0.59 2E-05 49.7 23.8 248 467-781 17-292 (357)
8 4aez_A CDC20, WD repeat-contai 96.3 1.5 5.2E-05 48.1 27.7 261 437-780 103-380 (401)
9 1gxr_A ESG1, transducin-like e 96.2 1.5 5E-05 45.9 33.1 238 460-779 43-295 (337)
10 3odt_A Protein DOA1; ubiquitin 96.2 1.4 4.8E-05 45.6 28.4 268 430-780 22-296 (313)
11 4g56_B MGC81050 protein; prote 96.1 1.3 4.3E-05 48.2 25.5 114 619-780 227-343 (357)
12 3zwl_B Eukaryotic translation 96.0 2 6.7E-05 45.6 33.8 112 619-780 219-346 (369)
13 1p22_A F-BOX/WD-repeat protein 96.0 1.8 6.2E-05 48.0 26.8 266 436-780 142-414 (435)
14 1vyh_C Platelet-activating fac 96.0 2.3 7.8E-05 47.0 27.3 258 437-778 120-409 (410)
15 1sq9_A Antiviral protein SKI8; 96.0 2.4 8E-05 45.9 29.7 71 705-779 303-394 (397)
16 1r5m_A SIR4-interacting protei 95.9 2.4 8.3E-05 45.8 32.2 146 588-779 269-424 (425)
17 1k8k_C P40, ARP2/3 complex 41 95.8 2.6 8.9E-05 44.8 34.1 147 391-552 20-171 (372)
18 2ovr_B FBW7, F-BOX/WD repeat p 95.4 4.1 0.00014 45.1 35.7 304 391-780 129-442 (445)
19 3i2n_A WD repeat-containing pr 95.4 3.4 0.00011 43.6 33.4 79 618-725 209-292 (357)
20 3ow8_A WD repeat-containing pr 95.3 3.6 0.00012 43.7 28.3 236 467-779 31-278 (321)
21 3gre_A Serine/threonine-protei 95.2 2.4 8.1E-05 46.8 23.7 27 705-731 340-366 (437)
22 4ery_A WD repeat-containing pr 95.2 3.6 0.00012 42.9 25.4 235 468-780 23-268 (312)
23 4aez_A CDC20, WD repeat-contai 94.9 5.6 0.00019 43.4 30.8 264 392-727 104-383 (401)
24 4aow_A Guanine nucleotide-bind 94.7 5 0.00017 42.0 30.8 138 588-779 195-336 (340)
25 2ynn_A Coatomer subunit beta'; 94.6 5.2 0.00018 41.9 25.3 151 564-780 20-172 (304)
26 4g56_B MGC81050 protein; prote 94.6 6.1 0.00021 42.6 25.1 237 429-725 97-344 (357)
27 3sfz_A APAF-1, apoptotic pepti 94.5 15 0.00051 46.6 40.6 62 705-780 1097-1158(1249)
28 2pm9_A Protein WEB1, protein t 94.4 4.2 0.00014 44.0 22.8 117 618-781 214-338 (416)
29 1sq9_A Antiviral protein SKI8; 94.3 6.8 0.00023 42.1 30.9 107 392-503 27-154 (397)
30 3vl1_A 26S proteasome regulato 94.3 7.2 0.00025 42.3 29.6 307 391-779 68-418 (420)
31 3mkq_A Coatomer beta'-subunit; 94.3 8.8 0.0003 46.0 27.4 227 437-727 25-262 (814)
32 4gqb_B Methylosome protein 50; 94.2 2.6 9E-05 45.5 20.2 62 705-779 227-288 (344)
33 3dm0_A Maltose-binding peripla 94.1 12 0.00042 44.2 31.7 105 391-504 395-501 (694)
34 3jrp_A Fusion protein of prote 94.1 7.2 0.00024 41.3 25.4 119 619-780 56-191 (379)
35 3jrp_A Fusion protein of prote 94.0 7.4 0.00025 41.2 28.9 115 628-780 172-287 (379)
36 4ery_A WD repeat-containing pr 93.8 7.3 0.00025 40.5 26.9 61 705-779 119-179 (312)
37 3mmy_A MRNA export factor; mRN 93.8 7.8 0.00027 40.7 27.4 270 438-777 55-343 (368)
38 4gqb_B Methylosome protein 50; 93.7 8.8 0.0003 41.3 25.1 234 430-725 86-332 (344)
39 1p22_A F-BOX/WD-repeat protein 93.4 11 0.00038 41.4 25.3 142 568-779 182-324 (435)
40 3zwl_B Eukaryotic translation 93.4 9.1 0.00031 40.2 24.8 133 611-780 67-206 (369)
41 3gre_A Serine/threonine-protei 93.0 2.9 9.8E-05 46.1 18.4 76 664-779 213-291 (437)
42 1erj_A Transcriptional repress 92.7 10 0.00034 41.3 22.2 120 619-780 166-287 (393)
43 1r5m_A SIR4-interacting protei 92.3 14 0.00047 39.7 32.3 112 619-780 248-361 (425)
44 4a11_B DNA excision repair pro 92.3 14 0.00047 39.5 27.8 296 379-727 46-368 (408)
45 3mkq_A Coatomer beta'-subunit; 92.1 25 0.00084 42.0 29.4 234 468-779 13-258 (814)
46 3k26_A Polycomb protein EED; W 92.1 3.6 0.00012 43.4 17.0 121 618-780 18-147 (366)
47 2aq5_A Coronin-1A; WD40 repeat 92.0 16 0.00054 39.6 26.5 117 618-780 176-299 (402)
48 2pbi_B Guanine nucleotide-bind 91.8 5.7 0.0002 42.7 18.4 122 611-779 189-314 (354)
49 3mmy_A MRNA export factor; mRN 91.8 4.3 0.00015 42.8 17.2 112 618-780 86-199 (368)
50 1got_B GT-beta; complex (GTP-b 91.8 15 0.00052 38.9 24.8 246 463-779 49-300 (340)
51 1got_B GT-beta; complex (GTP-b 91.7 15 0.00052 38.9 30.3 132 588-776 206-339 (340)
52 3jro_A Fusion protein of prote 91.6 17 0.0006 43.6 24.2 119 619-780 54-189 (753)
53 2ovr_B FBW7, F-BOX/WD repeat p 91.2 20 0.00069 39.3 36.0 259 435-779 127-390 (445)
54 1k8k_C P40, ARP2/3 complex 41 91.2 17 0.00058 38.3 26.0 117 619-779 53-172 (372)
55 3k26_A Polycomb protein EED; W 91.1 16 0.00056 38.1 28.4 67 706-780 242-318 (366)
56 3ei3_B DNA damage-binding prot 91.1 18 0.00063 38.6 23.2 89 611-730 197-288 (383)
57 1yfq_A Cell cycle arrest prote 90.9 17 0.00057 37.9 26.6 121 619-781 102-226 (342)
58 2ynn_A Coatomer subunit beta'; 90.9 17 0.00057 37.8 28.7 124 611-779 90-216 (304)
59 3jro_A Fusion protein of prote 90.4 22 0.00074 42.7 23.4 115 628-780 170-285 (753)
60 3ei3_B DNA damage-binding prot 90.2 8.1 0.00028 41.5 17.8 115 618-780 118-236 (383)
61 2xyi_A Probable histone-bindin 90.1 25 0.00086 38.6 24.2 262 458-780 118-410 (430)
62 2aq5_A Coronin-1A; WD40 repeat 90.1 24 0.00081 38.2 23.4 116 619-780 132-254 (402)
63 3odt_A Protein DOA1; ubiquitin 89.6 20 0.00067 36.6 32.8 237 461-779 10-254 (313)
64 2pm7_B Protein transport prote 89.5 13 0.00044 38.5 18.1 157 564-780 16-189 (297)
65 4h5i_A Guanine nucleotide-exch 89.1 26 0.00089 37.6 20.8 77 664-781 268-344 (365)
66 1yfq_A Cell cycle arrest prote 89.0 24 0.00081 36.6 30.7 239 430-726 15-284 (342)
67 3vu4_A KMHSV2; beta-propeller 88.7 28 0.00095 37.1 22.9 65 705-781 207-272 (355)
68 1vyh_C Platelet-activating fac 88.3 16 0.00056 40.0 18.7 111 620-779 152-264 (410)
69 3frx_A Guanine nucleotide-bind 87.8 29 0.00099 36.3 27.8 74 663-780 194-267 (319)
70 3lrv_A PRE-mRNA-splicing facto 87.8 22 0.00074 37.6 18.8 113 620-780 127-244 (343)
71 2xzm_R RACK1; ribosome, transl 87.7 17 0.00058 38.5 17.9 61 705-779 88-148 (343)
72 2hes_X YDR267CP; beta-propelle 87.4 12 0.00043 39.4 16.5 118 619-779 15-137 (330)
73 3dwl_C Actin-related protein 2 87.4 32 0.0011 36.4 23.0 203 468-727 11-239 (377)
74 4aow_A Guanine nucleotide-bind 87.3 29 0.001 35.8 35.1 20 705-724 318-337 (340)
75 3v7d_B Cell division control p 87.0 40 0.0014 37.0 32.8 109 620-779 272-380 (464)
76 2pbi_B Guanine nucleotide-bind 86.9 35 0.0012 36.3 26.8 119 611-776 233-353 (354)
77 3f3f_A Nucleoporin SEH1; struc 86.8 30 0.001 35.4 33.7 166 379-553 14-199 (351)
78 4gga_A P55CDC, cell division c 86.8 16 0.00055 40.0 17.5 101 628-779 116-217 (420)
79 4gga_A P55CDC, cell division c 86.6 40 0.0014 36.7 25.6 235 429-726 150-397 (420)
80 1erj_A Transcriptional repress 86.2 26 0.0009 37.9 18.7 110 621-779 126-237 (393)
81 2pm9_A Protein WEB1, protein t 86.2 27 0.00092 37.4 18.7 69 705-780 178-249 (416)
82 3hfq_A Uncharacterized protein 86.1 26 0.00088 36.8 18.2 115 54-182 150-270 (347)
83 1ri6_A Putative isomerase YBHE 85.9 16 0.00055 37.9 16.2 100 63-182 13-114 (343)
84 4ggc_A P55CDC, cell division c 85.9 33 0.0011 35.0 26.4 64 627-725 251-316 (318)
85 1l0q_A Surface layer protein; 85.5 41 0.0014 35.7 28.7 69 429-504 34-103 (391)
86 4e54_B DNA damage-binding prot 85.1 6 0.00021 43.8 12.9 118 618-779 119-239 (435)
87 3sfz_A APAF-1, apoptotic pepti 84.9 91 0.0031 39.3 46.1 61 112-182 627-687 (1249)
88 1l0q_A Surface layer protein; 84.7 44 0.0015 35.5 31.3 257 439-779 3-274 (391)
89 4a11_B DNA excision repair pro 84.1 46 0.0016 35.2 21.8 117 619-781 100-219 (408)
90 3f3f_A Nucleoporin SEH1; struc 83.8 41 0.0014 34.4 27.7 68 628-725 182-250 (351)
91 1pgu_A Actin interacting prote 83.4 66 0.0022 36.4 52.3 116 619-780 447-572 (615)
92 1nr0_A Actin interacting prote 83.3 21 0.00071 41.5 17.1 148 565-779 456-610 (611)
93 2oaj_A Protein SNI1; WD40 repe 82.9 66 0.0022 39.5 22.1 156 564-779 24-181 (902)
94 3bws_A Protein LP49; two-domai 82.3 59 0.002 35.1 26.8 51 714-779 380-431 (433)
95 3dwl_C Actin-related protein 2 81.9 7 0.00024 41.8 11.4 118 619-779 56-176 (377)
96 2oaj_A Protein SNI1; WD40 repe 81.5 9.7 0.00033 47.1 13.8 108 620-779 19-128 (902)
97 3fm0_A Protein CIAO1; WDR39,SG 81.5 57 0.002 34.4 34.6 285 391-726 28-337 (345)
98 2hes_X YDR267CP; beta-propelle 81.1 57 0.002 34.1 32.7 275 437-779 24-327 (330)
99 3dw8_B Serine/threonine-protei 80.9 42 0.0014 36.3 17.7 69 705-780 189-258 (447)
100 3vu4_A KMHSV2; beta-propeller 80.7 62 0.0021 34.3 31.2 128 618-780 195-336 (355)
101 3lrv_A PRE-mRNA-splicing facto 80.3 16 0.00056 38.6 13.6 63 705-780 139-201 (343)
102 3vl1_A 26S proteasome regulato 80.2 67 0.0023 34.4 34.1 106 628-780 259-365 (420)
103 3bg1_A Protein SEC13 homolog; 78.8 34 0.0012 35.7 15.4 119 620-780 15-136 (316)
104 3iz6_a 40S ribosomal protein R 78.7 27 0.00093 37.6 14.9 65 705-779 310-374 (380)
105 3dm0_A Maltose-binding peripla 78.7 1.1E+02 0.0037 35.9 28.1 278 438-779 396-692 (694)
106 2xyi_A Probable histone-bindin 78.6 75 0.0026 34.6 18.8 66 705-780 244-309 (430)
107 3iz6_a 40S ribosomal protein R 78.3 30 0.001 37.2 15.2 119 620-779 207-328 (380)
108 3scy_A Hypothetical bacterial 78.3 59 0.002 34.2 17.4 112 54-183 220-337 (361)
109 4e54_B DNA damage-binding prot 77.3 5.3 0.00018 44.2 8.7 79 663-779 117-195 (435)
110 1ri6_A Putative isomerase YBHE 74.7 79 0.0027 32.3 34.4 66 706-783 243-311 (343)
111 3frx_A Guanine nucleotide-bind 73.5 89 0.003 32.4 35.8 105 391-504 30-136 (319)
112 1jof_A Carboxy-CIS,CIS-muconat 72.7 83 0.0029 33.3 16.8 116 54-182 154-290 (365)
113 3bws_A Protein LP49; two-domai 72.2 1.1E+02 0.0037 32.8 25.6 79 392-477 182-262 (433)
114 3q7m_A Lipoprotein YFGL, BAMB; 72.1 1.1E+02 0.0036 32.5 28.8 58 705-777 318-375 (376)
115 1pby_B Quinohemoprotein amine 71.7 92 0.0032 31.7 28.2 24 705-728 291-314 (337)
116 2ymu_A WD-40 repeat protein; u 71.2 1.4E+02 0.0047 33.5 62.3 293 391-778 233-537 (577)
117 3dw8_B Serine/threonine-protei 65.4 1.5E+02 0.0051 31.7 22.4 87 663-780 224-315 (447)
118 3fm0_A Protein CIAO1; WDR39,SG 63.6 1.5E+02 0.005 31.0 26.7 78 663-780 59-136 (345)
119 1nir_A Nitrite reductase; hemo 62.3 1.2E+02 0.0041 34.6 16.1 119 627-779 189-310 (543)
120 2j04_A TAU60, YPL007P, hypothe 60.9 79 0.0027 36.7 13.8 69 705-780 141-211 (588)
121 3hfq_A Uncharacterized protein 58.6 1.7E+02 0.0059 30.2 37.6 69 705-784 251-321 (347)
122 4gq1_A NUP37; propeller, trans 58.5 66 0.0022 34.7 12.4 62 705-779 156-217 (393)
123 3scy_A Hypothetical bacterial 56.5 1.9E+02 0.0065 30.1 37.3 68 705-784 270-341 (361)
124 2w18_A PALB2, fancn, partner a 53.1 2.5E+02 0.0085 30.4 20.3 18 705-722 338-355 (356)
125 2xzm_R RACK1; ribosome, transl 50.2 2.3E+02 0.008 29.3 33.8 105 391-504 39-147 (343)
126 2pm7_B Protein transport prote 49.1 2.3E+02 0.0077 28.7 28.6 114 629-780 171-285 (297)
127 2vdu_B TRNA (guanine-N(7)-)-me 48.5 2.9E+02 0.01 29.8 26.1 120 620-780 104-229 (450)
128 3q7m_A Lipoprotein YFGL, BAMB; 46.5 2.8E+02 0.0096 29.1 18.5 72 391-471 103-175 (376)
129 1xip_A Nucleoporin NUP159; bet 45.8 68 0.0023 35.3 9.7 63 621-724 129-191 (388)
130 1xip_A Nucleoporin NUP159; bet 38.2 2.6E+02 0.009 30.4 13.0 52 708-779 139-190 (388)
131 3vgz_A Uncharacterized protein 35.0 3.7E+02 0.013 27.2 26.4 60 437-502 52-116 (353)
132 1jof_A Carboxy-CIS,CIS-muconat 33.7 4.3E+02 0.015 27.5 16.4 102 63-182 117-223 (365)
133 3bg1_A Protein SEC13 homolog; 32.5 4.1E+02 0.014 27.0 15.1 114 49-183 19-136 (316)
134 2oit_A Nucleoporin 214KDA; NH2 32.4 1.1E+02 0.0038 33.7 9.0 32 664-723 191-222 (434)
135 4gq1_A NUP37; propeller, trans 32.2 4.8E+02 0.016 27.6 15.7 90 661-779 182-285 (393)
136 2oit_A Nucleoporin 214KDA; NH2 30.9 2.9E+02 0.01 30.1 12.2 84 662-780 89-181 (434)
137 2ojh_A Uncharacterized protein 28.8 2E+02 0.0069 28.1 9.6 108 53-183 50-160 (297)
138 4ggc_A P55CDC, cell division c 25.4 5E+02 0.017 25.6 25.0 22 705-726 162-183 (318)
139 1nir_A Nitrite reductase; hemo 25.4 7.6E+02 0.026 27.7 18.4 62 705-778 190-255 (543)
140 2j04_A TAU60, YPL007P, hypothe 24.6 1.3E+02 0.0043 35.1 7.6 64 705-780 97-160 (588)
141 2vdu_B TRNA (guanine-N(7)-)-me 24.1 6.8E+02 0.023 26.7 35.6 18 705-722 319-337 (450)
142 2j04_B YDR362CP, TAU91; beta p 23.0 2.7E+02 0.0094 31.5 10.2 77 619-726 267-344 (524)
143 1jmx_B Amine dehydrogenase; ox 22.1 6.1E+02 0.021 25.4 13.2 116 51-183 7-134 (349)
144 2w18_A PALB2, fancn, partner a 21.9 7.6E+02 0.026 26.5 15.8 27 705-731 193-219 (356)
145 2hqs_A Protein TOLB; TOLB, PAL 21.7 5.6E+02 0.019 27.4 12.2 109 49-182 184-297 (415)
146 3u4y_A Uncharacterized protein 21.6 6.2E+02 0.021 25.3 20.9 64 707-779 141-206 (331)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=100.00 E-value=3.2e-104 Score=1004.83 Aligned_cols=680 Identities=20% Similarity=0.313 Sum_probs=580.6
Q ss_pred eEEEEEEEecCCceeEEEEEEecCCCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCC
Q 044070 30 IHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQV 109 (903)
Q Consensus 30 ~~~~~~tl~~pt~V~~sl~g~f~~~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~ 109 (903)
+++|+.|+++||+|+||+.|||++++.+|||++|+|+||||+++++| |++++++++||+|++|++|| |++
T Consensus 20 ~~~Y~~t~~~pT~V~~av~g~F~~~~~~~Lvvak~~~Lel~~~~~~~-L~~v~~~~l~G~I~~l~~~r---------~~g 89 (1158)
T 3ei3_A 20 SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKIAVMELFR---------PKG 89 (1158)
T ss_dssp CCEEEEEEECCCSCCEEEEECSSCSSCCEEEEEETTEEEEEEEETTE-EEEEEEEECSSCEEEEEEEC---------CTT
T ss_pred cEEEEEEeeCCChhhEEEEEEcCCCCccEEEEecCCEEEEEEEcccc-eEEEEEEEcccEEEEEEEEc---------CCC
Confidence 68999999999999999999999999999999999999999998876 99999999999999999997 588
Q ss_pred CCccEEEEEeCCCcEEEEEEeCCCcceE--eeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeecCCCC
Q 044070 110 MGKDLLVVISDSGKLSFLAFCNEMHRFF--PVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGS 187 (903)
Q Consensus 110 ~~~D~Llv~tds~~l~iL~~d~~~~~f~--tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~~~~~ 187 (903)
.++|+|+|+||+|++++|+||++++++. +.+.+.+...-.+...+|+|++|||+|||+|+++||++++||||++++.
T Consensus 90 ~~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~~~~~~~~~~r~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~- 168 (1158)
T 3ei3_A 90 ESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNK- 168 (1158)
T ss_dssp CSSCEEEEEETTCEEEEEEEEC-CCCCEEEEEEEEECCCSSCCBCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCT-
T ss_pred CCceEEEEEeCCceEEEEEEcCCCCceeEEEEeccccccCccccCCCCCEEEEcCCCCEEEEEeccCEEEEEEecCCcc-
Confidence 9999999999999999999999876544 4444445533345567899999999999999999999999999986421
Q ss_pred ccccccccCCCCccccCcccceeeeccccccEEEEEEeeCCCCCCCCCCCcEEEEEEeecCCccceEEEEEEEccCCcee
Q 044070 188 DIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAIS 267 (903)
Q Consensus 188 ~~~~~~~~sP~~~e~~~s~~~~~~~~~~~~~i~dm~FL~~~~~~~~~~~~PtlavL~~~~~~~~~~l~~y~ldl~~~~~~ 267 (903)
.+ ..++++..+.+|+||+|||+ |+||+||+||++. ..+++++|++|++++.
T Consensus 169 ---------~l---------~~~~~~l~~~~v~d~~fL~g-------~~~P~~A~Ly~d~--~~~~l~~y~ldl~~~~-- 219 (1158)
T 3ei3_A 169 ---------EL---------KAFNIRLEELHVIDVKFLYG-------CQAPTICFVYQDP--QGRHVKTYEVSLREKE-- 219 (1158)
T ss_dssp ---------TC---------CCEEEECSCCCEEEEEECSS-------CSSCEEEEEEEET--TEEEEEEEEEETTTTE--
T ss_pred ---------cc---------cccccccccceEEEEEEecC-------CCCcEEEEEEECC--CCCEEEEEEEEcCCCe--
Confidence 11 22335567789999999998 9999999999984 3689999999999963
Q ss_pred eee-eee--cCCCCcceEEeecCCCCceEEEeeCcEEEEecCCCCCCeeeeeccccCCCCcccccceeccccccccCCCc
Q 044070 268 VLS-CFF--EAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDE 344 (903)
Q Consensus 268 vi~-~~~--~~~~~~~~li~vP~~~ggvlv~~~~~il~i~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 344 (903)
+.+ .|. ..++.+++|||||+|+||+||+|+|.|+|+++++..
T Consensus 220 ~~~~~w~~~~l~~~a~~LipVP~~~gGvlv~g~n~i~y~~~~~~~----------------------------------- 264 (1158)
T 3ei3_A 220 FNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYL----------------------------------- 264 (1158)
T ss_dssp EEECSSCCEEECTTCCEEEECCTTTCCEEEECSSCEEEEETTEEE-----------------------------------
T ss_pred eeecccccccCCCCCCEEEECCCCCceEEEEECCEEEEEcCCCce-----------------------------------
Confidence 222 254 347789999999999999999999999999875310
Q ss_pred ccceeeeeeccccccCCCCccCCCCCCCCCCCeeEEEEeeccCCCCCCeEEEEeCCCCEEEEEEEeCCCc---cEEE-Ec
Q 044070 345 GLFNVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDG---HKVH-LS 420 (903)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~i~~~~~~~~~~~~~~~~LL~~e~G~l~~l~l~~~~~~---~~v~-~~ 420 (903)
..+ .|.++ +..++|++.+ +.++.++||++++|+||+|+|+.+++. ..|+ +.
T Consensus 265 ------~~~-~p~~~---------------~~~i~~~~~~---~~~~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~ 319 (1158)
T 3ei3_A 265 ------AIA-PPIIK---------------QSTIVCHNRV---DPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 319 (1158)
T ss_dssp ------EEC-CGGGG---------------GSCEEEEEEC---STTSSEEEEEETTCEEEEEEEEEEC-----CEEEEEE
T ss_pred ------EEe-ccccC---------------CceEEEEEEE---ecCCCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEE
Confidence 011 13221 1244554433 344689999999999999999998751 2454 55
Q ss_pred eecc-CCCCcceEEEECCCeEEEEEeeCCeEEEEEeCC------ceEEeeeecccccccceEEeecCCCCCCeEEEEeeC
Q 044070 421 ECLY-KGPPCKALLWVEGRFLSAFVEMGDGMVLKEENG------RLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGV 493 (903)
Q Consensus 421 ~~~~-~~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~~------~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~ 493 (903)
+.++ .+++|+++++|++|+||+||++|||+|||++.. .++++++++|||||+||+++|..++++++|++|||+
T Consensus 320 i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~ 399 (1158)
T 3ei3_A 320 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGA 399 (1158)
T ss_dssp EEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECC
T ss_pred EEEcCCccCccEEEEECCCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECc
Confidence 5544 588999999999999999999999999999832 378999999999999999999877788999999999
Q ss_pred CCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEe-CCccccccCcCCccCCCCeE
Q 044070 494 APEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRV-GLNFTDVTDSVGFRPDVCTL 572 (903)
Q Consensus 494 g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~-~~~~~e~~~~~~f~~~~~Tl 572 (903)
|++|+|+++|+||+++++++++ +++++++|+++....+++|.|||+||+++|+||++ ++++||++++ ||.++++||
T Consensus 400 g~~gsL~~lr~Gi~~~~~~~~~--l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~~~-gf~~~~~TL 476 (1158)
T 3ei3_A 400 FKEGSLRIIRNGIGIHEHASID--LPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM-GFVDDQQTF 476 (1158)
T ss_dssp GGGCEEEEEEESBCEEEEEEEC--CCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETTEEEEECCT-TCCSSSCEE
T ss_pred CCCCeEEEEecCCCEEEEEeec--CCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCCcccccccc-cccCCCCcE
Confidence 9999999999999999999996 78999999999876678999999999999999999 6789999776 999999999
Q ss_pred EEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEEecCCEEEEEEeCCcEEEEEeEEeccc
Q 044070 573 ACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSV 651 (903)
Q Consensus 573 ~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~~~~~vvva~~~~~il~~~~~~~~~~ 651 (903)
+|++++++.+||||+++||+++.+.. ..+.+|.+ .+..|++|+++++||+++ .+++++||+.. +
T Consensus 477 ~~~~l~~~~ivQVt~~~Irli~~~~~----------~~~~~w~~p~~~~I~~As~n~~~vvva-~g~~l~~fel~----~ 541 (1158)
T 3ei3_A 477 FCGNVAHQQLIQITSASVRLVSQEPK----------ALVSEWKEPQAKNISVASCNSSQVVVA-VGRALYYLQIH----P 541 (1158)
T ss_dssp EEEEETTTEEEEEESSCEEEEESSSC----------CEEEEECCTTCCCCCEEEECSSEEEEE-ETTEEEEEEEE----T
T ss_pred EEEEcCCCeEEEEecCEEEEEECCCC----------eEEEEEECCCCCEEEEEEeCCCEEEEE-ECCEEEEEEee----C
Confidence 99999999999999999999987643 36889997 778899999999999999 48889998765 3
Q ss_pred cceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEec-CCeEEEEEccCCCCeeE
Q 044070 652 SHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTH-RPSVEVLSFVPKEGLRV 730 (903)
Q Consensus 652 g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~-d~~v~i~sl~~~~~l~~ 730 (903)
+ +|.+..+.++++||+|+++.+.++|+.+ +.++|||+| |++|+||+|++ ++.
T Consensus 542 ~--~L~~~~~~~l~~evscl~i~~~~~~~~~----------------------s~~~aVg~~~d~tv~I~sL~~---l~~ 594 (1158)
T 3ei3_A 542 Q--ELRQISHTEMEHEVACLDITPLGDSNGL----------------------SPLCAIGLWTDISARILKLPS---FEL 594 (1158)
T ss_dssp T--EEEEEEEEECSSCEEEEECCCCSSSTTC----------------------CSEEEEEETTTTEEEEEETTT---CCE
T ss_pred C--ceeeecccCCCCceEEEEeecCCCCccc----------------------ccEEEEEECCCCEEEEEECCC---CCe
Confidence 3 5778888999999999999886555443 789999999 99999999985 555
Q ss_pred EEeeeeeecccCCCCCCCCCcceeEEeec-CccEEEEEecCCcEEEEEecCCCCCCCCCCCCCCCccccccccccccccc
Q 044070 731 LASGSIVLTNTMGTAISGCIPQDVRLVLA-DQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGI 809 (903)
Q Consensus 731 ~s~~~l~~~~~~~~~~s~~~p~si~l~~~-~~~~L~vgl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (903)
++.+++. .+ .+|+|++++.+ +.+||+|||+||.|++|.+++.+|
T Consensus 595 ~~~~~L~------~~---~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg-------------------------- 639 (1158)
T 3ei3_A 595 LHKEMLG------GE---IIPRSILMTTFESSHYLLCALGDGALFYFGLNIETG-------------------------- 639 (1158)
T ss_dssp EEEEECC------SS---CCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTC--------------------------
T ss_pred EEEEECC------CC---CCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCC--------------------------
Confidence 6766653 21 47999999988 479999999999999999998776
Q ss_pred ccccccccCCCCCccccccceeeecceeeEEEEEEeCCCceEEEecCCCeEEEEeCCceEEEEeeecCCcccCCCCCCCC
Q 044070 810 AATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC 889 (903)
Q Consensus 810 ~~~~~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~li~~~~~~l~~~~l~~~~~~~~~~f~s~~~ 889 (903)
++.+.++++||++|++|+++...+..+||++|++||++|.+++++.|+|++++++.++|+|++++|
T Consensus 640 --------------~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~ 705 (1158)
T 3ei3_A 640 --------------LLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGY 705 (1158)
T ss_dssp --------------CEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSS
T ss_pred --------------ccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccC
Confidence 345677889999999999999777889999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCeeeC
Q 044070 890 PKGILFVAENSLNL 903 (903)
Q Consensus 890 ~~g~~~~~~~~l~~ 903 (903)
|+|++++++++|||
T Consensus 706 ~~g~v~~~~~~LrI 719 (1158)
T 3ei3_A 706 PDSLALANNSTLTI 719 (1158)
T ss_dssp TTEEEEECSSCEEE
T ss_pred CCcEEEEcCCceEE
Confidence 99999999999986
No 2
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.76 E-value=0.12 Score=59.99 Aligned_cols=123 Identities=10% Similarity=0.013 Sum_probs=72.5
Q ss_pred CeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 618 HVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 618 ~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
...|.+.+.. +.+++.+..++.+..+... ++ ++.....-.....|.++++.+...+..
T Consensus 488 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~----~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~-------------- 547 (615)
T 1pgu_A 488 RAKPSYISISPSETYIAAGDVMGKILLYDLQ----SR--EVKTSRWAFRTSKINAISWKPAEKGAN-------------- 547 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETT----TT--EEEECCSCCCSSCEEEEEECCCC------------------
T ss_pred cCceEEEEECCCCCEEEEcCCCCeEEEeeCC----CC--cceeEeecCCCCceeEEEEcCcccccc--------------
Confidence 3457777664 5677777677777655332 22 332211111567899999876210000
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccCC-CCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEE
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPK-EGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLL 774 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~-~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~ 774 (903)
.......+||+|..|++|++|+++.. +.+..+ .... ....++.+..-+. |+.+-.||.+.
T Consensus 548 ----~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----------~~h~--~~v~~l~~s~~~~--l~s~~~d~~v~ 608 (615)
T 1pgu_A 548 ----EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-----------NAHK--DGVNNLLWETPST--LVSSGADACIK 608 (615)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-----------TSST--TCEEEEEEEETTE--EEEEETTSCEE
T ss_pred ----ccccCCCEEEEEcCCCcEEEEECCCCceechhh-----------hcCc--cceEEEEEcCCCC--eEEecCCceEE
Confidence 00012579999999999999999865 332211 0100 0124555554455 99999999999
Q ss_pred EEEec
Q 044070 775 RFEWP 779 (903)
Q Consensus 775 ~~~~~ 779 (903)
.|.++
T Consensus 609 iw~~~ 613 (615)
T 1pgu_A 609 RWNVV 613 (615)
T ss_dssp EEEEC
T ss_pred EEeee
Confidence 99886
No 3
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.74 E-value=1.1 Score=50.15 Aligned_cols=299 Identities=9% Similarity=0.002 Sum_probs=150.0
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEECCCeEEEEEeeCCeEEEEEeCCceEEeeeec-ccc
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQ-NIA 469 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~~~~~~~~~l~-N~g 469 (903)
+..++.+..+|.+..-.+.. +. .+. ...+......++....+++++.|+.-|.=.+|.+... +.+..+. .-+
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~-~~--~~~--~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~h~~ 204 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSIN-KK--FLL--QLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG--CCTHVFEGHNS 204 (464)
T ss_dssp TTEEEEEETTSCEEEEETTT-TE--EEE--EECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT--EEEEEECCCSS
T ss_pred CCEEEEEcCCCcEEEEECCC-Cc--EEE--EEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC--cEEEEECCCCC
Confidence 45677789999987765432 11 111 1112233446666666778888877666566655433 3444554 557
Q ss_pred cccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeE----------------------EeecCCCCCCccEEEEe
Q 044070 470 PILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEK----------------------LLRTAPIYQGITGTWTV 527 (903)
Q Consensus 470 PI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~----------------------~~~~~~~~~~v~~iWtl 527 (903)
+|..+.+.... ....+++++ .+|.+++..-.-.... +... ......+..+
T Consensus 205 ~v~~l~~~~~~---~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~ 276 (464)
T 3v7d_B 205 TVRCLDIVEYK---NIKYIVTGS--RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL---RGHMASVRTV 276 (464)
T ss_dssp CEEEEEEEESS---SCEEEEEEE--TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE---CCCSSCEEEE
T ss_pred ccEEEEEecCC---CCCEEEEEc--CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc---cCccceEEEE
Confidence 88888776432 123344433 4677777653221110 0011 0111222223
Q ss_pred eecCCCCcceEEEEEecCce-EEEEeCCc--cccccC------cCCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcc
Q 044070 528 RMKVSDPYHSFLVLSFVEET-RVLRVGLN--FTDVTD------SVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMV 598 (903)
Q Consensus 528 ~~~~~~~~~~~LvlS~~~~T-~vl~~~~~--~~e~~~------~~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~ 598 (903)
.. ...+++.+..+.+ .++.+... +..... ...|..+.+.|++|.. ...|++.+....
T Consensus 277 ~~-----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---------dg~i~vwd~~~~ 342 (464)
T 3v7d_B 277 SG-----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM---------DTTIRIWDLENG 342 (464)
T ss_dssp EE-----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET---------TSCEEEEETTTT
T ss_pred cC-----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCC
Confidence 21 2346666555544 34444221 111110 0123333444444442 234677765432
Q ss_pred cccCCCCCCCCeeeeEecCCeeEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCC
Q 044070 599 AHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP 678 (903)
Q Consensus 599 ~~~~~~~~~~~~~~~w~~~~~~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~ 678 (903)
.....+......|.+.+..+.+++.+..++.+..+... ++ + ..........+.++++.+.
T Consensus 343 ----------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~----~~--~--~~~~~~~~~~~~~~~~~~~-- 402 (464)
T 3v7d_B 343 ----------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN----DY--S--RKFSYHHTNLSAITTFYVS-- 402 (464)
T ss_dssp ----------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETT----TC--C--EEEEEECTTCCCEEEEEEC--
T ss_pred ----------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECC----CC--c--eeeeecCCCCccEEEEEeC--
Confidence 23445544334577777788888877777776655322 22 1 1112223444555555442
Q ss_pred cccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEee
Q 044070 679 ERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVL 758 (903)
Q Consensus 679 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~ 758 (903)
..++++|. |++|++|++...+.+... + .+.. . ...++.+.
T Consensus 403 --------------------------~~~l~~~~-dg~i~iwd~~~g~~~~~~----~-----~~~~--~-~v~~v~~~- 442 (464)
T 3v7d_B 403 --------------------------DNILVSGS-ENQFNIYNLRSGKLVHAN----I-----LKDA--D-QIWSVNFK- 442 (464)
T ss_dssp --------------------------SSEEEEEE-TTEEEEEETTTCCEEESC----T-----TTTC--S-EEEEEEEE-
T ss_pred --------------------------CCEEEEec-CCeEEEEECCCCcEEehh----h-----ccCC--C-cEEEEEec-
Confidence 45788887 999999999876543110 0 0110 0 11344332
Q ss_pred cCccEEEEEecCCcEEEEEec
Q 044070 759 ADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 759 ~~~~~L~vgl~~G~l~~~~~~ 779 (903)
+...+..+-++|..+.+.+|
T Consensus 443 -~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 443 -GKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp -TTEEEEEEEETTEEEEEEEE
T ss_pred -CCEEEEEEEeCCeEEEEEee
Confidence 45556666778877777666
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.51 E-value=0.88 Score=48.61 Aligned_cols=260 Identities=10% Similarity=0.061 Sum_probs=131.9
Q ss_pred CCeEEEEEeeCCeEEEEEeCCceEEeeeecc-cccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecC
Q 044070 437 GRFLSAFVEMGDGMVLKEENGRLVYTSPIQN-IAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTA 515 (903)
Q Consensus 437 ~~~lFvgS~~gds~L~~~~~~~~~~~~~l~N-~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~ 515 (903)
+.+|+.||.-|.=.+|.+..........+.+ -++|..+.+.. . ..++++++ .+|.+++..-.=+ +.+..+.
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~----~-~~~l~s~s--~D~~i~lWd~~~~-~~~~~~~ 119 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH----T-LPIAASSS--LDAHIRLWDLENG-KQIKSID 119 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS----S-SSEEEEEE--TTSEEEEEETTTT-EEEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC----C-CCEEEEEe--CCCcEEEEECCCC-CEEEEEe
Confidence 3567778777777788877655544444443 34566665532 1 23444333 5688887643211 1122221
Q ss_pred CCCCCccEEEEeeecCCCCcceEEEEEecCceE-EEEeCCc--cccccC------cCCccCCCCeEEEEeeCCCeEEEEE
Q 044070 516 PIYQGITGTWTVRMKVSDPYHSFLVLSFVEETR-VLRVGLN--FTDVTD------SVGFRPDVCTLACGLVADGLLVQIH 586 (903)
Q Consensus 516 ~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~-vl~~~~~--~~e~~~------~~~f~~~~~Tl~a~~~~~~~ivQVT 586 (903)
.+...+|.+.... ...+|+.+..+.+. ++.+... ...+.. ...|..+.+.|++|...
T Consensus 120 ---~~~~~~~~~~~sp---dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~d-------- 185 (321)
T 3ow8_A 120 ---AGPVDAWTLAFSP---DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID-------- 185 (321)
T ss_dssp ---CCTTCCCCEEECT---TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETT--------
T ss_pred ---CCCccEEEEEECC---CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCC--------
Confidence 1223345554432 24566666555443 4444321 100110 11344555566665542
Q ss_pred cCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccC
Q 044070 587 QNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRL 664 (903)
Q Consensus 587 ~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l 664 (903)
..|++.+.... .....+......|.+.+.. +.+++.+..++.+.++... .+ ++.. .-...
T Consensus 186 -g~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~----~~--~~~~-~~~~h 247 (321)
T 3ow8_A 186 -GIINIFDIATG----------KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ----HA--NLAG-TLSGH 247 (321)
T ss_dssp -SCEEEEETTTT----------EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT----TC--CEEE-EECCC
T ss_pred -CeEEEEECCCC----------cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC----Cc--ceeE-EEcCC
Confidence 34556654432 1333343322345555554 3344544455665554221 22 2221 11234
Q ss_pred CCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCC
Q 044070 665 QSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGT 744 (903)
Q Consensus 665 ~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~ 744 (903)
...|.++++.+. ..+|+.|..|++|+||++...+.+..+. +.
T Consensus 248 ~~~v~~~~~sp~----------------------------~~~l~s~s~D~~v~iwd~~~~~~~~~~~----------~h 289 (321)
T 3ow8_A 248 ASWVLNVAFCPD----------------------------DTHFVSSSSDKSVKVWDVGTRTCVHTFF----------DH 289 (321)
T ss_dssp SSCEEEEEECTT----------------------------SSEEEEEETTSCEEEEETTTTEEEEEEC----------CC
T ss_pred CCceEEEEECCC----------------------------CCEEEEEeCCCcEEEEeCCCCEEEEEEc----------CC
Confidence 567889988762 4588999999999999987654332221 00
Q ss_pred CCCCCCcceeEEeecCccEEEEEecCCcEEEEEe
Q 044070 745 AISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEW 778 (903)
Q Consensus 745 ~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~ 778 (903)
. . ...++.+.. +..+|+.|-.||.+..|..
T Consensus 290 ~-~--~v~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 290 Q-D--QVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp S-S--CEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred C-C--cEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 0 0 113343332 3567889999999988864
No 5
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.43 E-value=0.29 Score=53.66 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=30.3
Q ss_pred CCCeEEEEEeeCCeEEEEEeCCceEEeeeecccccccceEEee
Q 044070 436 EGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVD 478 (903)
Q Consensus 436 ~~~~lFvgS~~gds~L~~~~~~~~~~~~~l~N~gPI~D~~v~~ 478 (903)
++.++.+||...|+.+.-++-...+.+..+..-++|.++++..
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp 186 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST 186 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc
Confidence 3457778887778877777654455566677778899988743
No 6
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.38 E-value=1.2 Score=46.58 Aligned_cols=264 Identities=10% Similarity=-0.012 Sum_probs=130.8
Q ss_pred CcceEEEECCC-eEEEEEeeCCeEEEEEe--CC----ceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEE
Q 044070 428 PCKALLWVEGR-FLSAFVEMGDGMVLKEE--NG----RLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLR 500 (903)
Q Consensus 428 ~~ssl~~l~~~-~lFvgS~~gds~L~~~~--~~----~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~ 500 (903)
...++..-.++ +|+.++ |+.+.-++ .. .+........-++|..++... + .+.+++++ .+|.++
T Consensus 53 ~v~~~~~~~~~~~l~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~--~d~~i~ 122 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG---KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP----D-GCTLIVGG--EASTLS 122 (337)
T ss_dssp CCCEEEECSSSSEEEEEC---BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT----T-SSEEEEEE--SSSEEE
T ss_pred ceEEEEEecCCcEEEEcC---CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC----C-CCEEEEEc--CCCcEE
Confidence 33455555554 444444 55554444 21 122223234556777777653 1 23333333 467888
Q ss_pred EEeccCcee-EEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCce-EEEEeCCc--cccccCc------CCccCCCC
Q 044070 501 IIRSGISLE-KLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEET-RVLRVGLN--FTDVTDS------VGFRPDVC 570 (903)
Q Consensus 501 ~lr~gi~~~-~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T-~vl~~~~~--~~e~~~~------~~f~~~~~ 570 (903)
+..-.-+-. ...... .....++.+.... ...+|+.+..+.+ .++.+... +..+... ..|..+..
T Consensus 123 ~~d~~~~~~~~~~~~~---~~~~~i~~~~~~~---~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 196 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELT---SSAPACYALAISP---DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp EEECCCC--EEEEEEE---CSSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred EEECCCCCcceeeecc---cCCCceEEEEECC---CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC
Confidence 775433221 122221 1223355555432 2356666555444 35544321 1111110 12223334
Q ss_pred eEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEe
Q 044070 571 TLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRS 648 (903)
Q Consensus 571 Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~ 648 (903)
.|+++.. ...|++++.... ....... ....|.+.+.. +.+++++..++.+..+...
T Consensus 197 ~l~~~~~---------dg~i~~~d~~~~----------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~-- 254 (337)
T 1gxr_A 197 KLWTGGL---------DNTVRSWDLREG----------RQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN-- 254 (337)
T ss_dssp EEEEEET---------TSEEEEEETTTT----------EEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETT--
T ss_pred EEEEEec---------CCcEEEEECCCC----------ceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECC--
Confidence 4444332 234566664432 1222322 22346555554 5567776667766554322
Q ss_pred ccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCe
Q 044070 649 LSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGL 728 (903)
Q Consensus 649 ~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l 728 (903)
.+ +.. ........|.++++.+. ..++++|..|+.|++|+++..+.+
T Consensus 255 --~~--~~~--~~~~~~~~v~~~~~~~~----------------------------~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 255 --KP--DKY--QLHLHESCVLSLKFAYC----------------------------GKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp --SS--CEE--EECCCSSCEEEEEECTT----------------------------SSEEEEEETTSEEEEEETTTCCEE
T ss_pred --CC--CeE--EEcCCccceeEEEECCC----------------------------CCEEEEecCCCcEEEEECCCCeEE
Confidence 22 222 22344677888888652 458899999999999999875533
Q ss_pred eEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEe
Q 044070 729 RVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEW 778 (903)
Q Consensus 729 ~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~ 778 (903)
... . .. ....++.+.. +..+|++|..||.+..|++
T Consensus 301 ~~~-----~------~~---~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 FQS-----K------ES---SSVLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEE-----E------CS---SCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred EEe-----c------CC---CcEEEEEECC-CCCEEEEecCCCeEEEEEE
Confidence 111 0 00 0123443332 3568999999999998876
No 7
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.31 E-value=0.59 Score=49.67 Aligned_cols=248 Identities=10% Similarity=0.032 Sum_probs=123.0
Q ss_pred ccccccceEEeecCCCCCCeEEEEeeCC-CCCcEEEEeccCce-eEEeecCCCCCCccEEEEeeecCCCCcceEEEEEec
Q 044070 467 NIAPILDMSVVDYHDEKRDQMFACCGVA-PEGSLRIIRSGISL-EKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFV 544 (903)
Q Consensus 467 N~gPI~D~~v~~~~~~~~~~lva~sG~g-~~GsL~~lr~gi~~-~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~ 544 (903)
.-++|.+++... ....++++++.. .+|.+++..-.-+- ...... ..-..++.+..........+|+.+..
T Consensus 17 h~~~v~~~~~~p----~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 17 FNYTVFDCKWVP----CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----EKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp CSSCEEEEEECT----TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----EESSCEEEEECTTCCTTTCCEEEEET
T ss_pred CCCceEEEEEcC----CCceEEEecCccCCCcEEEEEeCCCCcccceeee----cccCcEEEEEEcCCCCCCceEEEecC
Confidence 345777777653 223455554432 37888887643221 111111 12234555555432111356666655
Q ss_pred Cce-EEEEeCCc---cccccCcC------------CccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCC
Q 044070 545 EET-RVLRVGLN---FTDVTDSV------------GFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSY 608 (903)
Q Consensus 545 ~~T-~vl~~~~~---~~e~~~~~------------~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~ 608 (903)
+.+ .++.+... +..+.... .|..+.+.|++|.- ...|++.+.....
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~---------d~~i~vwd~~~~~--------- 150 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR---------DGTVKVWDPRQKD--------- 150 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET---------TSCEEEECTTSCS---------
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC---------CCeEEEEeCCCCC---------
Confidence 554 45554321 11111100 11222233333321 2357777654321
Q ss_pred CeeeeEec-C---CeeEEEEE------ecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCC
Q 044070 609 PVCTSWFP-E---HVSISLGA------VAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHP 678 (903)
Q Consensus 609 ~~~~~w~~-~---~~~I~~As------~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~ 678 (903)
.....+.+ . ...|.+.+ -.+.+++.+..++.+.++... .+ +. .........|.++++.+...
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~--~~--~~~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 151 DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR----NM--AL--RWETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT----TT--EE--EEEEECSSCEEEEEESCSSS
T ss_pred CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc----cC--ce--eeecCCCCceEEEEcCCCCC
Confidence 12344433 2 22455554 245566666666766554322 22 22 22345578899998876210
Q ss_pred cccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEee
Q 044070 679 ERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVL 758 (903)
Q Consensus 679 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~ 758 (903)
...++++|+.|+.|++|++...+.+..+....+. +.. ....++.+..
T Consensus 223 -------------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~---~~v~~~~~~~ 269 (357)
T 3i2n_A 223 -------------------------SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEK-----AHK---STVWQVRHLP 269 (357)
T ss_dssp -------------------------SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEE-----CCS---SCEEEEEEET
T ss_pred -------------------------CCCEEEEECCCCeEEEEeCcCCCcccceeeeccC-----CCc---CCEEEEEECC
Confidence 1468899999999999998764433222211111 000 0123454443
Q ss_pred cCccEEEEEecCCcEEEEEecCC
Q 044070 759 ADQFYVLAGLRNGMLLRFEWPPD 781 (903)
Q Consensus 759 ~~~~~L~vgl~~G~l~~~~~~~~ 781 (903)
-+..+|+.|-.||.+..|.+...
T Consensus 270 ~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 270 QNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp TEEEEEEEEETTSEEEEEEEECC
T ss_pred CCCcEEEEEeCCCcEEEeecCCC
Confidence 34458999999999999998743
No 8
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.29 E-value=1.5 Score=48.06 Aligned_cols=261 Identities=10% Similarity=0.026 Sum_probs=127.8
Q ss_pred CCeEEEEEeeCCeEEEEEeCCceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCC
Q 044070 437 GRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAP 516 (903)
Q Consensus 437 ~~~lFvgS~~gds~L~~~~~~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~ 516 (903)
++.+++++.-|.=.+|.+........-....-++|.+++... +...|++++ .+|.+++..-.-+ +.+..+.
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~----~~~~l~~~~---~dg~i~iwd~~~~-~~~~~~~- 173 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH----DGSFLSVGL---GNGLVDIYDVESQ-TKLRTMA- 173 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT----TSSEEEEEE---TTSCEEEEETTTC-CEEEEEC-
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC----CCCEEEEEC---CCCeEEEEECcCC-eEEEEec-
Confidence 455666664444344443333333233333467888887754 123344433 3578887753322 2222221
Q ss_pred CCCCccEEEEeeecCCCCcceEEEEEecCceE-EEEeCCc---cccccCc------CCccCCCCeEEEEeeCCCeEEEEE
Q 044070 517 IYQGITGTWTVRMKVSDPYHSFLVLSFVEETR-VLRVGLN---FTDVTDS------VGFRPDVCTLACGLVADGLLVQIH 586 (903)
Q Consensus 517 ~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~-vl~~~~~---~~e~~~~------~~f~~~~~Tl~a~~~~~~~ivQVT 586 (903)
..-..++.+... ..+|+.+..+.+. ++.+... +...... ..|..+...|++|..
T Consensus 174 --~~~~~v~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--------- 237 (401)
T 4aez_A 174 --GHQARVGCLSWN-----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN--------- 237 (401)
T ss_dssp --CCSSCEEEEEEE-----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET---------
T ss_pred --CCCCceEEEEEC-----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC---------
Confidence 122334444442 2456655555543 4544311 1111110 122233444444432
Q ss_pred cCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEe---CCcEEEEEeEEeccccceEEEEeee
Q 044070 587 QNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTS---NPCFLFILGVRSLSVSHYEIYEMQH 661 (903)
Q Consensus 587 ~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~---~~~il~~~~~~~~~~g~~~L~~~~~ 661 (903)
...|++++.... .....+......|.+.+.. +.+++++.+ ++.+.++... ++ +. ...
T Consensus 238 d~~v~iwd~~~~----------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~----~~--~~--~~~ 299 (401)
T 4aez_A 238 DNVVQIWDARSS----------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA----TG--AR--VNT 299 (401)
T ss_dssp TSCEEEEETTCS----------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT----TC--CE--EEE
T ss_pred CCeEEEccCCCC----------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC----CC--CE--EEE
Confidence 245666765432 1233333323345555554 345555543 4555544221 22 22 223
Q ss_pred ccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEE--EecCCeEEEEEccCCCCeeEEEeeeeeec
Q 044070 662 MRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVI--GTHRPSVEVLSFVPKEGLRVLASGSIVLT 739 (903)
Q Consensus 662 ~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v--g~~d~~v~i~sl~~~~~l~~~s~~~l~~~ 739 (903)
......|.++++.+. ..++++ |..|+.|+||.++..+...... +.
T Consensus 300 ~~~~~~v~~~~~s~~----------------------------~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~---~~-- 346 (401)
T 4aez_A 300 VDAGSQVTSLIWSPH----------------------------SKEIMSTHGFPDNNLSIWSYSSSGLTKQVD---IP-- 346 (401)
T ss_dssp EECSSCEEEEEECSS----------------------------SSEEEEEECTTTCEEEEEEEETTEEEEEEE---EE--
T ss_pred EeCCCcEEEEEECCC----------------------------CCeEEEEeecCCCcEEEEecCCccceeEEE---ec--
Confidence 345678999988763 346666 5579999999987643221111 11
Q ss_pred ccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 740 NTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 740 ~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
+.. + ...++.+.. +..+|+.|-.||.+..|.+..
T Consensus 347 ---~h~-~--~v~~~~~s~-dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 347 ---AHD-T--RVLYSALSP-DGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp ---CCS-S--CCCEEEECT-TSSEEEEECTTSEEEEEECCC
T ss_pred ---CCC-C--CEEEEEECC-CCCEEEEEeCCCcEEEEECCC
Confidence 000 0 113443332 467899999999999998864
No 9
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.23 E-value=1.5 Score=45.95 Aligned_cols=238 Identities=8% Similarity=0.044 Sum_probs=126.1
Q ss_pred EEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCce--eEEeecCCCCCCccEEEEeeecCCCCcce
Q 044070 460 VYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISL--EKLLRTAPIYQGITGTWTVRMKVSDPYHS 537 (903)
Q Consensus 460 ~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~--~~~~~~~~~~~~v~~iWtl~~~~~~~~~~ 537 (903)
..+..+..-++|..+++.. ..+++++++ +|.+++..-.-+- ..+.... ....-..++.+.... ...
T Consensus 43 ~~~~~~~h~~~v~~~~~~~-----~~~~l~~~~---dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~---~~~ 110 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISN-----PTRHVYTGG---KGCVKVWDISHPGNKSPVSQLD-CLNRDNYIRSCKLLP---DGC 110 (337)
T ss_dssp EEEEEECCSSCCCEEEECS-----SSSEEEEEC---BSEEEEEETTSTTCCSCSEEEE-CSCTTSBEEEEEECT---TSS
T ss_pred ccceeccCCCceEEEEEec-----CCcEEEEcC---CCeEEEEECCCCCceeeeeccc-ccCCCCcEEEEEEcC---CCC
Confidence 4455566777888888753 224555544 6889887643221 1111110 112334455555542 245
Q ss_pred EEEEEecCce-EEEEeCCcc----ccccCc------CCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCC
Q 044070 538 FLVLSFVEET-RVLRVGLNF----TDVTDS------VGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPL 606 (903)
Q Consensus 538 ~LvlS~~~~T-~vl~~~~~~----~e~~~~------~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~ 606 (903)
+|+.+..+.+ .++.+...- ...... ..|..+...|+++.. ...|++++....
T Consensus 111 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~v~~~d~~~~-------- 173 (337)
T 1gxr_A 111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS---------DGNIAVWDLHNQ-------- 173 (337)
T ss_dssp EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET---------TSCEEEEETTTT--------
T ss_pred EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC---------CCcEEEEeCCCC--------
Confidence 6666655554 355553311 011100 022223333333332 234666665432
Q ss_pred CCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCC
Q 044070 607 SYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSS 684 (903)
Q Consensus 607 ~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~ 684 (903)
.....+......|.+.+.. +.+++.+..++.+.++... .+ +. .........+.++++.+.
T Consensus 174 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~--~~--~~~~~~~~~v~~~~~s~~-------- 235 (337)
T 1gxr_A 174 --TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR----EG--RQ--LQQHDFTSQIFSLGYCPT-------- 235 (337)
T ss_dssp --EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TT--EE--EEEEECSSCEEEEEECTT--------
T ss_pred --ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC----CC--ce--EeeecCCCceEEEEECCC--------
Confidence 1333443333457666664 4566666667766655322 22 22 233456778889888652
Q ss_pred CCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEE
Q 044070 685 SPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYV 764 (903)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L 764 (903)
..++++|..|+.|++|++...+.. .+ . +.. ....++.+.. +..+|
T Consensus 236 --------------------~~~l~~~~~~~~i~~~~~~~~~~~-~~-----~-----~~~---~~v~~~~~~~-~~~~l 280 (337)
T 1gxr_A 236 --------------------GEWLAVGMESSNVEVLHVNKPDKY-QL-----H-----LHE---SCVLSLKFAY-CGKWF 280 (337)
T ss_dssp --------------------SSEEEEEETTSCEEEEETTSSCEE-EE-----C-----CCS---SCEEEEEECT-TSSEE
T ss_pred --------------------CCEEEEEcCCCcEEEEECCCCCeE-EE-----c-----CCc---cceeEEEECC-CCCEE
Confidence 468899999999999998765421 11 0 000 0123443332 35679
Q ss_pred EEEecCCcEEEEEec
Q 044070 765 LAGLRNGMLLRFEWP 779 (903)
Q Consensus 765 ~vgl~~G~l~~~~~~ 779 (903)
++|..||.+..|.+.
T Consensus 281 ~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 281 VSTGKDNLLNAWRTP 295 (337)
T ss_dssp EEEETTSEEEEEETT
T ss_pred EEecCCCcEEEEECC
Confidence 999999999988875
No 10
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.21 E-value=1.4 Score=45.61 Aligned_cols=268 Identities=9% Similarity=0.083 Sum_probs=128.4
Q ss_pred ceEEEECCCeEEEEEeeCCeEEEEEeCCceEEeeee-cccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccC--
Q 044070 430 KALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPI-QNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGI-- 506 (903)
Q Consensus 430 ssl~~l~~~~lFvgS~~gds~L~~~~~~~~~~~~~l-~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi-- 506 (903)
.++..-++++|+.|+.-|.=.+|.+... .....+ ..-++|..+++... . +.+++++ .+|.+++.+---
T Consensus 22 ~~~~~~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~----~-~~l~~~~--~dg~i~~~~~~~~~ 92 (313)
T 3odt_A 22 RDVVAVDDSKVASVSRDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDSE----K-ELLLFGG--KDTMINGVPLFATS 92 (313)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEEESSS--EEEEEEEECSSCEEEEEEETT----T-TEEEEEE--TTSCEEEEETTCCT
T ss_pred EEEEecCCCEEEEEEcCCcEEEEECCCC--EEEEEeecCCccEEEEEECCC----C-CEEEEec--CCCeEEEEEeeecC
Confidence 4454545677888876665566666432 222222 33577888877541 2 3344433 367777664211
Q ss_pred ceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceE-EEEeCCccccccCcCCccCCCCeEEEEeeCCCeEEEE
Q 044070 507 SLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETR-VLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQI 585 (903)
Q Consensus 507 ~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~-vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~~~~~ivQV 585 (903)
..+.+..+. ..-..++.+... ..+++.+..+.+. ++..+......... ......+......++.++=.
T Consensus 93 ~~~~~~~~~---~~~~~i~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 93 GEDPLYTLI---GHQGNVCSLSFQ-----DGVVISGSWDKTAKVWKEGSLVYNLQAH---NASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp TSCC-CEEC---CCSSCEEEEEEE-----TTEEEEEETTSEEEEEETTEEEEEEECC---SSCEEEEEEEETTTTEEEEE
T ss_pred CCCcccchh---hcccCEEEEEec-----CCEEEEEeCCCCEEEEcCCcEEEecccC---CCceeEEEEccCCCCEEEEE
Confidence 111122221 122334445442 2466666555554 44311111111110 00000111111112222222
Q ss_pred Ec-CcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEEec-CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeec
Q 044070 586 HQ-NAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAVA-HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHM 662 (903)
Q Consensus 586 T~-~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~~-~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~ 662 (903)
+. ..|++.+... ....+.. ....|.+.+.. +..++.+..++.+.++... .+ +.... -.
T Consensus 162 ~~d~~i~i~d~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~----~~--~~~~~-~~ 222 (313)
T 3odt_A 162 SADKTIKLWQNDK------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMH----TG--DVLRT-YE 222 (313)
T ss_dssp ETTSCEEEEETTE------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETT----TC--CEEEE-EE
T ss_pred ECCCCEEEEecCc------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECC----ch--hhhhh-hh
Confidence 22 3455565322 2334443 34456665554 4555555556665554321 22 22211 12
Q ss_pred cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccC
Q 044070 663 RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTM 742 (903)
Q Consensus 663 ~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~ 742 (903)
.....|.++++.+. . .+++|..|++|++|++...+.+..+.. .
T Consensus 223 ~~~~~i~~~~~~~~----------------------------~-~l~~~~~dg~v~iwd~~~~~~~~~~~~---~----- 265 (313)
T 3odt_A 223 GHESFVYCIKLLPN----------------------------G-DIVSCGEDRTVRIWSKENGSLKQVITL---P----- 265 (313)
T ss_dssp CCSSCEEEEEECTT----------------------------S-CEEEEETTSEEEEECTTTCCEEEEEEC---S-----
T ss_pred cCCceEEEEEEecC----------------------------C-CEEEEecCCEEEEEECCCCceeEEEec---c-----
Confidence 34577899988652 2 477899999999999877654322210 0
Q ss_pred CCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 743 GTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 743 ~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
.. ...++.+..-+. +++|-.||.+..|.+..
T Consensus 266 ~~-----~i~~~~~~~~~~--~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 266 AI-----SIWSVDCMSNGD--IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp SS-----CEEEEEECTTSC--EEEEETTSCEEEEESCG
T ss_pred Cc-----eEEEEEEccCCC--EEEEeCCCcEEEEeCCC
Confidence 00 113444433333 77899999999999864
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.11 E-value=1.3 Score=48.19 Aligned_cols=114 Identities=9% Similarity=-0.051 Sum_probs=67.5
Q ss_pred eeEEEEEec---CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 619 VSISLGAVA---HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 619 ~~I~~As~~---~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
..+.+++.. +..++.+..++.+.++... ++ +... .-......|.|+++.+..
T Consensus 227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~----~~--~~~~-~~~~~~~~v~~l~~sp~~------------------ 281 (357)
T 4g56_B 227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIK----NP--DSAQ-TSAVHSQNITGLAYSYHS------------------ 281 (357)
T ss_dssp SCEEEEEECTTSTTEEEEEESSSCEEEEESS----CG--GGCE-EECCCSSCEEEEEECSSS------------------
T ss_pred ccccchhhhhcccceEEEeecccceeEEECC----CC--cEeE-EEeccceeEEEEEEcCCC------------------
Confidence 346666654 2345555566666554322 22 1111 112335678999886521
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEE
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLR 775 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~ 775 (903)
..+||.|..|++|+||.+...+.+..+ +.. ....++.+.+.+..+|..|-.||.+..
T Consensus 282 ---------~~~lasgs~D~~i~iwd~~~~~~~~~~-----------~H~---~~V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 282 ---------SPFLASISEDCTVAVLDADFSEVFRDL-----------SHR---DFVTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp ---------SCCEEEEETTSCEEEECTTSCEEEEEC-----------CCS---SCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred ---------CCEEEEEeCCCEEEEEECCCCcEeEEC-----------CCC---CCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 468999999999999988654432111 111 012566655455667888889999999
Q ss_pred EEecC
Q 044070 776 FEWPP 780 (903)
Q Consensus 776 ~~~~~ 780 (903)
|.+..
T Consensus 339 W~~~~ 343 (357)
T 4g56_B 339 HHLPS 343 (357)
T ss_dssp EECC-
T ss_pred EECCC
Confidence 99864
No 12
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.02 E-value=2 Score=45.56 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=65.3
Q ss_pred eeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCC
Q 044070 619 VSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVP 696 (903)
Q Consensus 619 ~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~ 696 (903)
..|.+.+.. +.+++.+..++.+.++... .+ +. .........+.++++.+.
T Consensus 219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~----~~--~~--~~~~~~~~~~~~~~~~~~-------------------- 270 (369)
T 3zwl_B 219 KSISDMQFSPDLTYFITSSRDTNSFLVDVS----TL--QV--LKKYETDCPLNTAVITPL-------------------- 270 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETT----TC--CE--EEEEECSSCEEEEEECSS--------------------
T ss_pred CceeEEEECCCCCEEEEecCCceEEEEECC----CC--ce--eeeecCCCCceeEEecCC--------------------
Confidence 346665554 4556666566666554321 22 22 223346677888887663
Q ss_pred CCCCccccceEEEEEecCC--------------eEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCcc
Q 044070 697 ALPAGVIIGYTFVIGTHRP--------------SVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQF 762 (903)
Q Consensus 697 ~~~~~~~~~~~l~vg~~d~--------------~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~ 762 (903)
..++++|..++ .+++|.+...+.+..+. +.. ....++.+.. +..
T Consensus 271 --------~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----------~~~---~~v~~~~~s~-~~~ 328 (369)
T 3zwl_B 271 --------KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ----------GHF---GPLNTVAISP-QGT 328 (369)
T ss_dssp --------SSEEEEEECCC-------------CEEEEEETTTCCEEEEEE----------CCS---SCEEEEEECT-TSS
T ss_pred --------CceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee----------ccc---CcEEEEEECC-CCC
Confidence 45788888877 67888776554332221 000 0113443332 456
Q ss_pred EEEEEecCCcEEEEEecC
Q 044070 763 YVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 763 ~L~vgl~~G~l~~~~~~~ 780 (903)
+|+.|-.||.+..|.++.
T Consensus 329 ~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 329 SYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEEEEETTSEEEEEEECH
T ss_pred EEEEEcCCCeEEEEECcc
Confidence 899999999999999864
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.01 E-value=1.8 Score=48.01 Aligned_cols=266 Identities=10% Similarity=0.130 Sum_probs=132.2
Q ss_pred CCCeEEEEEeeCCeEEEEEeCCceEEeeeec-ccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeec
Q 044070 436 EGRFLSAFVEMGDGMVLKEENGRLVYTSPIQ-NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRT 514 (903)
Q Consensus 436 ~~~~lFvgS~~gds~L~~~~~~~~~~~~~l~-N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~ 514 (903)
++++++.|+.-|.=.+|.+.. .+.+..+. .-++|..++. + .+++++++ .+|.+++..-.-+ +.+..+
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~-~------~~~l~sg~--~dg~i~vwd~~~~-~~~~~~ 209 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQY-D------ERVIITGS--SDSTVRVWDVNTG-EMLNTL 209 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEEC-C------SSEEEEEE--TTSCEEEEESSSC-CEEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCC--CeEEEEEcCCCCcEEEEEE-C------CCEEEEEc--CCCeEEEEECCCC-cEEEEE
Confidence 567788887766655655432 23334443 3457766665 1 12333333 4688887753222 222222
Q ss_pred CCCCCCccEEEEeeecCCCCcceEEEEEecCce-EEEEeCCccccccCcCCccCCCCeEEEEeeCCCeEEEEEc-CcEEE
Q 044070 515 APIYQGITGTWTVRMKVSDPYHSFLVLSFVEET-RVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQ-NAVRL 592 (903)
Q Consensus 515 ~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T-~vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~~~~~ivQVT~-~~irl 592 (903)
. .....+..+... +.+++.+..+.+ .++.+... +.......+......+.+-.+.+..++=... ..|++
T Consensus 210 ~---~h~~~v~~l~~~-----~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 210 I---HHCEAVLHLRFN-----NGMMVTCSKDRSIAVWDMASP-TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 280 (435)
T ss_dssp C---CCCSCEEEEECC-----TTEEEEEETTSCEEEEECSSS-SCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred c---CCCCcEEEEEEc-----CCEEEEeeCCCcEEEEeCCCC-CCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEE
Confidence 1 122345555443 235555555544 35555321 0000000000111122222222233333332 34666
Q ss_pred EccCcccccCCCCCCCCeeeeEecCCeeEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEE
Q 044070 593 CMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCIS 672 (903)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~ 672 (903)
.+.... .....+......|.+.+..+.+++.+..++.+.++... ++. .+... ......|.|++
T Consensus 281 wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~----~~~-~~~~~--~~h~~~v~~~~ 343 (435)
T 1p22_A 281 WNTSTC----------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE----CGA-CLRVL--EGHEELVRCIR 343 (435)
T ss_dssp EETTTC----------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT----TCC-EEEEE--CCCSSCEEEEE
T ss_pred EECCcC----------cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC----CCC-EEEEE--eCCcCcEEEEE
Confidence 765432 23445544334577777778888888778877665322 221 12211 12456788887
Q ss_pred ccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCe-eE---EEeeeeeecccCCCCCCC
Q 044070 673 IPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGL-RV---LASGSIVLTNTMGTAISG 748 (903)
Q Consensus 673 i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l-~~---~s~~~l~~~~~~~~~~s~ 748 (903)
+. ..++++|..|++|++|++...+.. .. .....+. ...+
T Consensus 344 ~~------------------------------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~h~~- 386 (435)
T 1p22_A 344 FD------------------------------NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV------EHSG- 386 (435)
T ss_dssp CC------------------------------SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC------CCSS-
T ss_pred ec------------------------------CCEEEEEeCCCcEEEEECCCCCCccccccchheeecc------CCCC-
Confidence 71 358999999999999998643210 00 0001110 1000
Q ss_pred CCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 749 CIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 749 ~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
...++.+ +..+|+.|-.||.+..|.+..
T Consensus 387 -~v~~l~~---~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 387 -RVFRLQF---DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp -CCCCEEE---CSSCEEECCSSSEEEEEC---
T ss_pred -CeEEEEe---CCCEEEEEeCCCEEEEEECCC
Confidence 1134443 566799999999999998864
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.98 E-value=2.3 Score=47.03 Aligned_cols=258 Identities=11% Similarity=0.075 Sum_probs=126.6
Q ss_pred CCeEEEEEeeCCeEEEEEeCCceEEeeeecc-cccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecC
Q 044070 437 GRFLSAFVEMGDGMVLKEENGRLVYTSPIQN-IAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTA 515 (903)
Q Consensus 437 ~~~lFvgS~~gds~L~~~~~~~~~~~~~l~N-~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~ 515 (903)
..+|+.||.-|.=.+|.+... +...++.. -++|.++++... .++++++| .+|.+++..-.- .+.+..+.
T Consensus 120 ~~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~-----~~~l~sgs--~D~~i~iwd~~~-~~~~~~~~ 189 (410)
T 1vyh_C 120 FSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHS-----GKLLASCS--ADMTIKLWDFQG-FECIRTMH 189 (410)
T ss_dssp SSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTT-----SSEEEEEE--TTSCCCEEETTS-SCEEECCC
T ss_pred CCEEEEEeCCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCC-----CCEEEEEe--CCCeEEEEeCCC-CceeEEEc
Confidence 346666766555555554332 22334443 467888776431 23444444 467787764321 12222221
Q ss_pred CCCCCccEEEEeeecCCCCcceEEEEEecCceE-EEEeCCc--cccccCc------CCccCCCCeEEEEeeCCCeEEEEE
Q 044070 516 PIYQGITGTWTVRMKVSDPYHSFLVLSFVEETR-VLRVGLN--FTDVTDS------VGFRPDVCTLACGLVADGLLVQIH 586 (903)
Q Consensus 516 ~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~-vl~~~~~--~~e~~~~------~~f~~~~~Tl~a~~~~~~~ivQVT 586 (903)
..-..++.+.... ...+|+.+..+.+. ++.+... +..+... ..|..+...|++|..
T Consensus 190 ---~h~~~V~~v~~~p---~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~--------- 254 (410)
T 1vyh_C 190 ---GHDHNVSSVSIMP---NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN--------- 254 (410)
T ss_dssp ---CCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET---------
T ss_pred ---CCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC---------
Confidence 2234566666643 23566666556554 5544221 1111110 122233444444443
Q ss_pred cCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec----------------------CCEEEEEEeCCcEEEEE
Q 044070 587 QNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA----------------------HNMIIVSTSNPCFLFIL 644 (903)
Q Consensus 587 ~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~----------------------~~~vvva~~~~~il~~~ 644 (903)
...|++.+.... ............|.+.+.. +.+++.+..++.+.++.
T Consensus 255 D~~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 255 DQTVRVWVVATK----------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp TSCEEEEETTTC----------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred CCeEEEEECCCC----------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 124555543321 1122222211223333332 34566655566665543
Q ss_pred eEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccC
Q 044070 645 GVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVP 724 (903)
Q Consensus 645 ~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~ 724 (903)
.. .+ +... .-......|.|+++.+. ..+|+.|..|++|++|++..
T Consensus 325 ~~----~~--~~~~-~~~~h~~~v~~v~~~~~----------------------------g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 325 VS----TG--MCLM-TLVGHDNWVRGVLFHSG----------------------------GKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp TT----TT--EEEE-EEECCSSCEEEEEECSS----------------------------SSCEEEEETTTEEEEECCTT
T ss_pred CC----CC--ceEE-EEECCCCcEEEEEEcCC----------------------------CCEEEEEeCCCeEEEEECCC
Confidence 21 22 2211 11234567889888652 45888999999999999876
Q ss_pred CCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEe
Q 044070 725 KEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEW 778 (903)
Q Consensus 725 ~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~ 778 (903)
.+.+..+.. .. ....++.+.. ...+|..|-.||.+..|.+
T Consensus 370 ~~~~~~~~~----------h~---~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 370 KRCMKTLNA----------HE---HFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCCCEEEEC----------CS---SCEEEEEECS-SSSCEEEEETTSEEEEEC-
T ss_pred CceEEEEcC----------CC---CcEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Confidence 655433311 00 0112333322 3567899999999987754
No 15
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.95 E-value=2.4 Score=45.85 Aligned_cols=71 Identities=11% Similarity=-0.015 Sum_probs=42.9
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCC----CCC--------CCCcceeEEeecCc---------cE
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGT----AIS--------GCIPQDVRLVLADQ---------FY 763 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~----~~s--------~~~p~si~l~~~~~---------~~ 763 (903)
..+|++|..|++|+||++...+.+..+.. ... ..+. ..+ .....++.+..-+. .+
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~-~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKTKERITTLNM---HCD-DIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEEC---CGG-GCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred CCEEEEEeCCCeEEEEEcCCCceeEEEec---ccC-cccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 45899999999999999976554333320 000 0000 000 01124555544332 68
Q ss_pred EEEEecCCcEEEEEec
Q 044070 764 VLAGLRNGMLLRFEWP 779 (903)
Q Consensus 764 L~vgl~~G~l~~~~~~ 779 (903)
|+.|-.||.+..|.++
T Consensus 379 l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEEEETTTEEEEEEEE
T ss_pred EEEecCCCcEEEEEcC
Confidence 9999999999999886
No 16
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.93 E-value=2.4 Score=45.84 Aligned_cols=146 Identities=10% Similarity=0.013 Sum_probs=74.4
Q ss_pred CcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec-CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCC
Q 044070 588 NAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA-HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQS 666 (903)
Q Consensus 588 ~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~-~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~ 666 (903)
..|++++.... .....+......|.+.+.. +.+++.+..++.+.++... .+ +.... ......
T Consensus 269 ~~i~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~----~~--~~~~~-~~~~~~ 331 (425)
T 1r5m_A 269 GTLRIWHGGNG----------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLK----QN--TLLAL-SIVDGV 331 (425)
T ss_dssp SCEEEECSSSB----------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETT----TT--EEEEE-EECTTC
T ss_pred CEEEEEECCCC----------ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECC----CC--cEeEe-cccCCc
Confidence 44777765433 1233443333457666665 3355555555655544221 22 22221 112356
Q ss_pred ceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCC-eeEEEe--------eeee
Q 044070 667 ELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEG-LRVLAS--------GSIV 737 (903)
Q Consensus 667 eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~-l~~~s~--------~~l~ 737 (903)
.|.++++.+. ..++++|+.|+.|++|++...+. ...+.. ....
T Consensus 332 ~i~~~~~s~~----------------------------~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (425)
T 1r5m_A 332 PIFAGRISQD----------------------------GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383 (425)
T ss_dssp CEEEEEECTT----------------------------SSEEEEEETTSCEEEEECHHHHC--------------CEECC
T ss_pred cEEEEEEcCC----------------------------CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccch
Confidence 7888888652 46899999999999999875431 000000 0000
Q ss_pred ecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 738 LTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 738 ~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
+...+..........++.+.. +..+|++|..||.+..|.++
T Consensus 384 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 384 LYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred hhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence 000011100000113333322 35589999999999988874
No 17
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.75 E-value=2.6 Score=44.85 Aligned_cols=147 Identities=7% Similarity=0.003 Sum_probs=76.6
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEEC-CCeEEEEEeeCCeEEEEEeCCceEE-eeeeccc
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVE-GRFLSAFVEMGDGMVLKEENGRLVY-TSPIQNI 468 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~-~~~lFvgS~~gds~L~~~~~~~~~~-~~~l~N~ 468 (903)
+..++.+..+|.++...+.... .+. +....+......++.... +.+|+.|+.-|.=.+|.+....... ......-
T Consensus 20 ~~~l~~~~~d~~v~i~~~~~~~--~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 96 (372)
T 1k8k_C 20 RTQIAICPNNHEVHIYEKSGNK--WVQ-VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN 96 (372)
T ss_dssp SSEEEEECSSSEEEEEEEETTE--EEE-EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEEeCCCEEEEEeCCCCc--EEe-eeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC
Confidence 4566677799999888775321 111 111011222345565554 5678888877777777776543322 2223445
Q ss_pred ccccceEEeecCCCCCCeEEEEeeCCCCCcEEE--EeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCc
Q 044070 469 APILDMSVVDYHDEKRDQMFACCGVAPEGSLRI--IRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEE 546 (903)
Q Consensus 469 gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~--lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~ 546 (903)
++|.++++.. . .+.+++++ .+|.+++ ++.+-......... ...-..++.+.... ...+|+.+..+.
T Consensus 97 ~~v~~~~~~~----~-~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~---~~~~l~~~~~dg 164 (372)
T 1k8k_C 97 RAARCVRWAP----N-EKKFAVGS--GSRVISICYFEQENDWWVCKHIK--KPIRSTVLSLDWHP---NSVLLAAGSCDF 164 (372)
T ss_dssp SCEEEEEECT----T-SSEEEEEE--TTSSEEEEEEETTTTEEEEEEEC--TTCCSCEEEEEECT---TSSEEEEEETTS
T ss_pred CceeEEEECC----C-CCEEEEEe--CCCEEEEEEecCCCcceeeeeee--cccCCCeeEEEEcC---CCCEEEEEcCCC
Confidence 6777777643 1 23444443 3577877 44443322222221 12234456665543 245677665555
Q ss_pred e-EEEEe
Q 044070 547 T-RVLRV 552 (903)
Q Consensus 547 T-~vl~~ 552 (903)
+ .++.+
T Consensus 165 ~i~~~d~ 171 (372)
T 1k8k_C 165 KCRIFSA 171 (372)
T ss_dssp CEEEEEC
T ss_pred CEEEEEc
Confidence 4 46664
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.44 E-value=4.1 Score=45.09 Aligned_cols=304 Identities=11% Similarity=0.061 Sum_probs=152.8
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEECCCeEEEEEeeCCeEEEEEeCCceEEeeeec-ccc
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQ-NIA 469 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~~~~~~~~~l~-N~g 469 (903)
+..++.+..+|.+....+.. +. .+. ...+......++.. .+++++.|+.-|.=.+|.+... +.+..+. .-+
T Consensus 129 g~~l~sg~~dg~i~vwd~~~-~~--~~~--~~~~h~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~h~~ 200 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVT-GK--CLR--TLVGHTGGVWSSQM-RDNIIISGSTDRTLKVWNAETG--ECIHTLYGHTS 200 (445)
T ss_dssp TTEEEEEETTSCEEEEETTT-CC--EEE--ECCCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTT--EEEEEECCCSS
T ss_pred CCEEEEEECCCcEEEEECCC-Cc--EEE--EEcCCCCCEEEEEe-cCCEEEEEeCCCeEEEEECCcC--cEEEEECCCCC
Confidence 56788889999988766532 21 121 00111222233433 4678888877665555555432 3444444 345
Q ss_pred cccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceE-
Q 044070 470 PILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETR- 548 (903)
Q Consensus 470 PI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~- 548 (903)
+|..+... ...+++++ .+|.+++..-.-+ +.+..+. .....+..+... ..+++.+..+.+.
T Consensus 201 ~v~~~~~~------~~~l~s~s---~dg~i~~wd~~~~-~~~~~~~---~~~~~v~~~~~~-----~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 201 TVRCMHLH------EKRVVSGS---RDATLRVWDIETG-QCLHVLM---GHVAAVRCVQYD-----GRRVVSGAYDFMVK 262 (445)
T ss_dssp CEEEEEEE------TTEEEEEE---TTSEEEEEESSSC-CEEEEEE---CCSSCEEEEEEC-----SSCEEEEETTSCEE
T ss_pred cEEEEEec------CCEEEEEe---CCCEEEEEECCCC-cEEEEEc---CCcccEEEEEEC-----CCEEEEEcCCCEEE
Confidence 67666652 12344443 4678887753221 1111221 111233344331 2455555545443
Q ss_pred EEEeCCc--cccccCcCCccCCCCeEEEEeeCCCeEEEEE-cCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEE
Q 044070 549 VLRVGLN--FTDVTDSVGFRPDVCTLACGLVADGLLVQIH-QNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGA 625 (903)
Q Consensus 549 vl~~~~~--~~e~~~~~~f~~~~~Tl~a~~~~~~~ivQVT-~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As 625 (903)
++.+... +..+. .....+.+-.+.+..++=.. ...|++.+.... .....+......+.+.+
T Consensus 263 iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~v~~~~ 326 (445)
T 2ovr_B 263 VWDPETETCLHTLQ------GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG----------NCIHTLTGHQSLTSGME 326 (445)
T ss_dssp EEEGGGTEEEEEEC------CCSSCEEEEEECSSEEEEEETTSCEEEEETTTC----------CEEEEECCCCSCEEEEE
T ss_pred EEECCCCcEeEEec------CCCCceEEEEECCCEEEEEeCCCeEEEEECCCC----------CEEEEEcCCcccEEEEE
Confidence 5544211 11111 11112222222222222222 345677765432 23444443334566777
Q ss_pred ecCCEEEEEEeCCcEEEEEeEEeccccceEEEEee-eccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCcccc
Q 044070 626 VAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQ-HMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVII 704 (903)
Q Consensus 626 ~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~-~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (903)
..+++++.+..++.+.++... ++. .+.... .......|.|++..
T Consensus 327 ~~~~~l~~~~~dg~i~vwd~~----~~~-~~~~~~~~~~~~~~v~~~~~~------------------------------ 371 (445)
T 2ovr_B 327 LKDNILVSGNADSTVKIWDIK----TGQ-CLQTLQGPNKHQSAVTCLQFN------------------------------ 371 (445)
T ss_dssp EETTEEEEEETTSCEEEEETT----TCC-EEEEECSTTSCSSCEEEEEEC------------------------------
T ss_pred EeCCEEEEEeCCCeEEEEECC----CCc-EEEEEccCCCCCCCEEEEEEC------------------------------
Confidence 778888887778877665332 221 222221 12245678888763
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCc----EEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGM----LLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~----l~~~~~~~ 780 (903)
..++++|+.|++|++|++...+.+..+... . . +.. . ....++.+. -+..+|.+|-.||. +..+.++.
T Consensus 372 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~-~-~~~-~-~~v~~~~~s-~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 372 KNFVITSSDDGTVKLWDLKTGEFIRNLVTL----E-S-GGS-G-GVVWRIRAS-NTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEEEC----T-T-GGG-T-CEEEEEEEC-SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeecc----c-c-CCC-C-ceEEEEEec-CCEEEEEEcccCCCCccEEEEEECCC
Confidence 358999999999999999876644333110 0 0 000 0 011233332 14678899999997 88888764
No 19
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.37 E-value=3.4 Score=43.60 Aligned_cols=79 Identities=5% Similarity=-0.021 Sum_probs=47.0
Q ss_pred CeeEEEEEec-----CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCC
Q 044070 618 HVSISLGAVA-----HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSN 692 (903)
Q Consensus 618 ~~~I~~As~~-----~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~ 692 (903)
...|.+.+.. +.+++.+..++.+.++......... .+...........|.++++.+..
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~--------------- 271 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK--GFASVSEKAHKSTVWQVRHLPQN--------------- 271 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT--EEEEEEEECCSSCEEEEEEETTE---------------
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc--ceeeeccCCCcCCEEEEEECCCC---------------
Confidence 3457776665 4566666667766655332100000 11111112456788888887621
Q ss_pred CCCCCCCCccccceEEEEEecCCeEEEEEccCC
Q 044070 693 SSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPK 725 (903)
Q Consensus 693 ~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~ 725 (903)
..+++.|..|+.|++|.+...
T Consensus 272 ------------~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 272 ------------RELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp ------------EEEEEEEETTSEEEEEEEECC
T ss_pred ------------CcEEEEEeCCCcEEEeecCCC
Confidence 348999999999999998754
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.34 E-value=3.6 Score=43.73 Aligned_cols=236 Identities=8% Similarity=0.009 Sum_probs=116.8
Q ss_pred ccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCc-eeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecC
Q 044070 467 NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGIS-LEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVE 545 (903)
Q Consensus 467 N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~-~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~ 545 (903)
--++|..++........ .++++++| .+|.+++....-+ ......++ ..-..++.+.... ...+++.+-.+
T Consensus 31 H~~~V~~v~~~~~~~~~-~~~l~tgs--~D~~v~vW~~~~~~~~~~~~l~---gh~~~v~~~~~~~---~~~~l~s~s~D 101 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKEN-SETVVTGS--LDDLVKVWKWRDERLDLQWSLE---GHQLGVVSVDISH---TLPIAASSSLD 101 (321)
T ss_dssp SSSCEEEEEEC--------CEEEEEE--TTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECS---SSSEEEEEETT
T ss_pred CCCcEEEEEEecCCCCC-CCEEEEEc--CCCCEEEEECCCCCeeeeeeec---cCCCCEEEEEECC---CCCEEEEEeCC
Confidence 44677777765322111 23333333 4678887753222 11122221 2223455555432 23455544444
Q ss_pred ceE-EEEeCCc--cccccC------cCCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEec
Q 044070 546 ETR-VLRVGLN--FTDVTD------SVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP 616 (903)
Q Consensus 546 ~T~-vl~~~~~--~~e~~~------~~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~ 616 (903)
.+. ++.+... +..+.. ...|..+.+.|++|.. + ..|++++.... ........
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-d--------g~v~i~~~~~~----------~~~~~~~~ 162 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-V--------GKVNIFGVESG----------KKEYSLDT 162 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-T--------SEEEEEETTTC----------SEEEEEEC
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-C--------CcEEEEEcCCC----------ceeEEecC
Confidence 443 4544321 111111 1134556666666653 2 23455554332 12223333
Q ss_pred CCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCC
Q 044070 617 EHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSS 694 (903)
Q Consensus 617 ~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~ 694 (903)
.+..|.+.+.. +.+++.+..++.+.++... ++ ++... -......|.|+++.+.
T Consensus 163 ~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~----~~--~~~~~-~~~h~~~v~~l~~spd------------------ 217 (321)
T 3ow8_A 163 RGKFILSIAYSPDGKYLASGAIDGIINIFDIA----TG--KLLHT-LEGHAMPIRSLTFSPD------------------ 217 (321)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TT--EEEEE-ECCCSSCCCEEEECTT------------------
T ss_pred CCceEEEEEECCCCCEEEEEcCCCeEEEEECC----CC--cEEEE-EcccCCceeEEEEcCC------------------
Confidence 33446665554 4566666667766554322 22 22221 1123567888888662
Q ss_pred CCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEE
Q 044070 695 VPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLL 774 (903)
Q Consensus 695 ~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~ 774 (903)
..+|+.|..|++|+||++...+.+..+. +.. ....++.+.. +..+|+.|-.||.+.
T Consensus 218 ----------~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------~h~--~~v~~~~~sp-~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 218 ----------SQLLVTASDDGYIKIYDVQHANLAGTLS-----------GHA--SWVLNVAFCP-DDTHFVSSSSDKSVK 273 (321)
T ss_dssp ----------SCEEEEECTTSCEEEEETTTCCEEEEEC-----------CCS--SCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred ----------CCEEEEEcCCCeEEEEECCCcceeEEEc-----------CCC--CceEEEEECC-CCCEEEEEeCCCcEE
Confidence 4689999999999999987655322211 100 0112333332 356799999999999
Q ss_pred EEEec
Q 044070 775 RFEWP 779 (903)
Q Consensus 775 ~~~~~ 779 (903)
.|.+.
T Consensus 274 iwd~~ 278 (321)
T 3ow8_A 274 VWDVG 278 (321)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 98875
No 21
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=95.20 E-value=2.4 Score=46.80 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=21.5
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEE
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVL 731 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~ 731 (903)
..+|+.|..|++|++|++...+.+..+
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred ceEEEecCCCCeEEEEECCCcccceEE
Confidence 468999999999999999876554433
No 22
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.18 E-value=3.6 Score=42.90 Aligned_cols=235 Identities=9% Similarity=0.080 Sum_probs=115.4
Q ss_pred cccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCce
Q 044070 468 IAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEET 547 (903)
Q Consensus 468 ~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T 547 (903)
-++|..+++... .+.+++++ .+|.+++....-+ +....+. ..-..++.+.... ...+|+.+..+.+
T Consensus 23 ~~~v~~~~~s~~-----~~~l~s~~--~dg~i~iw~~~~~-~~~~~~~---~h~~~v~~~~~~~---~~~~l~s~~~d~~ 88 (312)
T 4ery_A 23 TKAVSSVKFSPN-----GEWLASSS--ADKLIKIWGAYDG-KFEKTIS---GHKLGISDVAWSS---DSNLLVSASDDKT 88 (312)
T ss_dssp SSCEEEEEECTT-----SSEEEEEE--TTSCEEEEETTTC-CEEEEEC---CCSSCEEEEEECT---TSSEEEEEETTSE
T ss_pred CCcEEEEEECCC-----CCEEEEee--CCCeEEEEeCCCc-ccchhhc---cCCCceEEEEEcC---CCCEEEEECCCCE
Confidence 367777776431 23344433 5677877653211 1111221 1122344454432 2456666655555
Q ss_pred E-EEEeCCc--cccccCc------CCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCC
Q 044070 548 R-VLRVGLN--FTDVTDS------VGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEH 618 (903)
Q Consensus 548 ~-vl~~~~~--~~e~~~~------~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~ 618 (903)
. ++.+... +..+... ..|..+...|++|.. ...|++.+.... .....+....
T Consensus 89 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~----------~~~~~~~~~~ 149 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---------DESVRIWDVKTG----------KCLKTLPAHS 149 (312)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET---------TSCEEEEETTTC----------CEEEEECCCS
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCC----------EEEEEecCCC
Confidence 3 5554321 1111110 123333444444432 234666665432 1233333223
Q ss_pred eeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCC
Q 044070 619 VSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVP 696 (903)
Q Consensus 619 ~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~ 696 (903)
..|.+.+.. +.+++.+..++.+.++... .+ +............+.++++.+.
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~----~~--~~~~~~~~~~~~~~~~~~~~~~-------------------- 203 (312)
T 4ery_A 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA----SG--QCLKTLIDDDNPPVSFVKFSPN-------------------- 203 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT----TC--CEEEEECCSSCCCEEEEEECTT--------------------
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEECC----CC--ceeeEEeccCCCceEEEEECCC--------------------
Confidence 356665554 4566666666766654322 22 2221111223456778877652
Q ss_pred CCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEE
Q 044070 697 ALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRF 776 (903)
Q Consensus 697 ~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~ 776 (903)
..++++|+.|++|++|++...+.+..+.. .. .........+...+..+|+.|-.||.+..|
T Consensus 204 --------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~l~sg~~dg~i~vw 264 (312)
T 4ery_A 204 --------GKYILAATLDNTLKLWDYSKGKCLKTYTG----------HK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264 (312)
T ss_dssp --------SSEEEEEETTTEEEEEETTTTEEEEEECS----------SC-CSSSCCCEEEECSSSCEEEECCTTSCEEEE
T ss_pred --------CCEEEEEcCCCeEEEEECCCCcEEEEEEe----------cC-CceEEEEEEEEeCCCcEEEEECCCCEEEEE
Confidence 46889999999999999876543222110 00 000111111222246789999999999998
Q ss_pred EecC
Q 044070 777 EWPP 780 (903)
Q Consensus 777 ~~~~ 780 (903)
.+..
T Consensus 265 d~~~ 268 (312)
T 4ery_A 265 NLQT 268 (312)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 8753
No 23
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.87 E-value=5.6 Score=43.41 Aligned_cols=264 Identities=8% Similarity=0.016 Sum_probs=129.8
Q ss_pred CeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEEC-CCeEEEEEeeCCeEEEEEeCCceEEeeee-cccc
Q 044070 392 PKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVE-GRFLSAFVEMGDGMVLKEENGRLVYTSPI-QNIA 469 (903)
Q Consensus 392 ~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~-~~~lFvgS~~gds~L~~~~~~~~~~~~~l-~N~g 469 (903)
..++.+..+|.++...+.. +. ..... .........++.... +.+|++|+..|.=.+|.+... +.+..+ ..-+
T Consensus 104 ~~l~~~~~d~~v~lw~~~~-~~--~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~ 177 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADS-GS--VSALA-ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMAGHQA 177 (401)
T ss_dssp TSEEEEEETTEEEEEETTT-CC--EEEEE-ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSS
T ss_pred CCEEEEECCCeEEEeeCCC-Cc--EeEee-ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEecCCCC
Confidence 4577788888887766532 11 11110 111122334555543 457777777665555555432 233333 3456
Q ss_pred cccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCce-E
Q 044070 470 PILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEET-R 548 (903)
Q Consensus 470 PI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T-~ 548 (903)
+|..+.. + . +++++++ .+|.+++..-...-.....+. ..-..++.+.... ...+|+.+..+.+ .
T Consensus 178 ~v~~~~~-~-----~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~---~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 178 RVGCLSW-N-----R-HVLSSGS--RSGAIHHHDVRIANHQIGTLQ---GHSSEVCGLAWRS---DGLQLASGGNDNVVQ 242 (401)
T ss_dssp CEEEEEE-E-----T-TEEEEEE--TTSEEEEEETTSSSCEEEEEE---CCSSCEEEEEECT---TSSEEEEEETTSCEE
T ss_pred ceEEEEE-C-----C-CEEEEEc--CCCCEEEEecccCcceeeEEc---CCCCCeeEEEEcC---CCCEEEEEeCCCeEE
Confidence 7777765 2 1 2344433 468888776543333232221 1223455555442 2456666655544 3
Q ss_pred EEEeCCc--cccccCc------CCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCee
Q 044070 549 VLRVGLN--FTDVTDS------VGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVS 620 (903)
Q Consensus 549 vl~~~~~--~~e~~~~------~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 620 (903)
++.+... +...... ..|..+...+.+..-+ -....|++++.... .....+. .+..
T Consensus 243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g------s~d~~i~i~d~~~~----------~~~~~~~-~~~~ 305 (401)
T 4aez_A 243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG------TMDKQIHFWNAATG----------ARVNTVD-AGSQ 305 (401)
T ss_dssp EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC------TTTCEEEEEETTTC----------CEEEEEE-CSSC
T ss_pred EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC------CCCCEEEEEECCCC----------CEEEEEe-CCCc
Confidence 5555321 1111110 0111112222221100 01456777775533 2333443 2335
Q ss_pred EEEEEec--CCEEEEEE--eCCcEEEEEeEEeccccceEEEEe-eeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 621 ISLGAVA--HNMIIVST--SNPCFLFILGVRSLSVSHYEIYEM-QHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 621 I~~As~~--~~~vvva~--~~~~il~~~~~~~~~~g~~~L~~~-~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
|.+.+.. +.+++++. .++.+.++... .+ ++... ........|.++++.+.
T Consensus 306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~----~~--~~~~~~~~~~h~~~v~~~~~s~d------------------- 360 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYS----SS--GLTKQVDIPAHDTRVLYSALSPD------------------- 360 (401)
T ss_dssp EEEEEECSSSSEEEEEECTTTCEEEEEEEE----TT--EEEEEEEEECCSSCCCEEEECTT-------------------
T ss_pred EEEEEECCCCCeEEEEeecCCCcEEEEecC----Cc--cceeEEEecCCCCCEEEEEECCC-------------------
Confidence 6666664 45555554 35666555332 22 22222 22234577888888662
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccCCCC
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEG 727 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~ 727 (903)
..+|++|..|++|++|++...+.
T Consensus 361 ---------g~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 361 ---------GRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp ---------SSEEEEECTTSEEEEEECCC---
T ss_pred ---------CCEEEEEeCCCcEEEEECCCCcc
Confidence 46899999999999999976554
No 24
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.68 E-value=5 Score=41.97 Aligned_cols=138 Identities=9% Similarity=0.053 Sum_probs=74.3
Q ss_pred CcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCC
Q 044070 588 NAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQ 665 (903)
Q Consensus 588 ~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~ 665 (903)
..|++.+.... .....+......|.+.+.. +.+++.+..++.+.++... .+ .........
T Consensus 195 ~~i~i~d~~~~----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~----~~----~~~~~~~~~ 256 (340)
T 4aow_A 195 KLVKVWNLANC----------KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN----EG----KHLYTLDGG 256 (340)
T ss_dssp SCEEEEETTTT----------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT----TT----EEEEEEECS
T ss_pred CEEEEEECCCC----------ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec----cC----ceeeeecCC
Confidence 34666665432 2333443323457766665 4566666666776654321 21 122334445
Q ss_pred CceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCC
Q 044070 666 SELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTA 745 (903)
Q Consensus 666 ~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~ 745 (903)
..|.+++..+ ...++++..|++|+||+++....+..+....... ...
T Consensus 257 ~~v~~~~~~~-----------------------------~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~-- 303 (340)
T 4aow_A 257 DIINALCFSP-----------------------------NRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST--SSK-- 303 (340)
T ss_dssp SCEEEEEECS-----------------------------SSSEEEEEETTEEEEEETTTTEEEEEECCC-----------
T ss_pred ceEEeeecCC-----------------------------CCceeeccCCCEEEEEECCCCeEEEeccccceee--ecc--
Confidence 6788887765 1234556779999999987644332221111000 000
Q ss_pred CCCCCcceeEEeec--CccEEEEEecCCcEEEEEec
Q 044070 746 ISGCIPQDVRLVLA--DQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 746 ~s~~~p~si~l~~~--~~~~L~vgl~~G~l~~~~~~ 779 (903)
..+..|.-+.+ +..+|+.|-.||.+..|++.
T Consensus 304 ---~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 304 ---AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ---CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 11222322222 45789999999999999886
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.61 E-value=5.2 Score=41.86 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=85.9
Q ss_pred CccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEE
Q 044070 564 GFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFL 641 (903)
Q Consensus 564 ~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il 641 (903)
.|..+.+.|++|.. + ..|++.+.... .....+......|.+++.. +++++.+..++.+.
T Consensus 20 ~fsp~~~~l~s~~~-d--------g~v~lWd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 20 DFHPTEPWVLTTLY-S--------GRVELWNYETQ----------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp EECSSSSEEEEEET-T--------SEEEEEETTTT----------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred EECCCCCEEEEEcC-C--------CcEEEEECCCC----------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 45566777777764 2 34556655432 1233333222345554443 45666666666666
Q ss_pred EEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEE
Q 044070 642 FILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLS 721 (903)
Q Consensus 642 ~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~s 721 (903)
++... ++. .+... ......|.|+++.+. ..+++.|.+|++|++|+
T Consensus 81 vwd~~----~~~-~~~~~--~~h~~~v~~~~~~~~----------------------------~~~l~sgs~D~~v~lWd 125 (304)
T 2ynn_A 81 VFNYN----TGE-KVVDF--EAHPDYIRSIAVHPT----------------------------KPYVLSGSDDLTVKLWN 125 (304)
T ss_dssp EEETT----TCC-EEEEE--ECCSSCEEEEEECSS----------------------------SSEEEEEETTSCEEEEE
T ss_pred EEECC----CCc-EEEEE--eCCCCcEEEEEEcCC----------------------------CCEEEEECCCCeEEEEE
Confidence 55322 221 12211 234577999998763 45899999999999999
Q ss_pred ccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 722 FVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 722 l~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
+.....+... +. +.. ....++.+.+.+..+|..|-.||.+..|.+..
T Consensus 126 ~~~~~~~~~~----~~-----~h~---~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 126 WENNWALEQT----FE-----GHE---HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172 (304)
T ss_dssp GGGTTEEEEE----EC-----CCC---SCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCcchhhh----hc-----ccC---CcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 8754322111 11 010 01134444433457899999999999998753
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.61 E-value=6.1 Score=42.63 Aligned_cols=237 Identities=8% Similarity=-0.031 Sum_probs=109.6
Q ss_pred cceEEEECCCeEEEEEeeCCeEEEEEeCCceEEeee---ecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEecc
Q 044070 429 CKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSP---IQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSG 505 (903)
Q Consensus 429 ~ssl~~l~~~~lFvgS~~gds~L~~~~~~~~~~~~~---l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~g 505 (903)
..++....++.+++++.-|.=.+|.+.......... ..--++|..+++.. +...|++++ .+|.+++..-.
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp----dg~~l~sgs---~dg~v~iwd~~ 169 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS----DGTQAVSGG---KDFSVKVWDLS 169 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS----SSSEEEEEE---TTSCEEEEETT
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC----CCCEEEEEe---CCCeEEEEECC
Confidence 356777778888888876655555554322111111 22346788777643 122343332 46778876432
Q ss_pred CceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceE-EEEeCCccccccCcCCccCCCCeEEEEee-CC-Ce-
Q 044070 506 ISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETR-VLRVGLNFTDVTDSVGFRPDVCTLACGLV-AD-GL- 581 (903)
Q Consensus 506 i~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~-vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~-~~-~~- 581 (903)
=+ +.+..+. ..-..++.+..... .+.+++....+.+. ++.+.. -+.+... .+......+.+-.+ .+ +.
T Consensus 170 ~~-~~~~~~~---~h~~~v~~v~~s~~--~~~~~~s~~~dg~v~~wd~~~-~~~~~~~-~~~~~~~~v~~v~~sp~~~~~ 241 (357)
T 4g56_B 170 QK-AVLKSYN---AHSSEVNCVAACPG--KDTIFLSCGEDGRILLWDTRK-PKPATRI-DFCASDTIPTSVTWHPEKDDT 241 (357)
T ss_dssp TT-EEEEEEC---CCSSCEEEEEECTT--CSSCEEEEETTSCEEECCTTS-SSCBCBC-CCTTCCSCEEEEEECTTSTTE
T ss_pred CC-cEEEEEc---CCCCCEEEEEEccC--CCceeeeeccCCceEEEECCC-Cceeeee-eeccccccccchhhhhcccce
Confidence 21 2222232 12234555554321 12344444445543 433321 0111100 01111111111111 11 11
Q ss_pred EEEEE-cCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEE-EEEEeCCcEEEEEeEEeccccceEEE
Q 044070 582 LVQIH-QNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMI-IVSTSNPCFLFILGVRSLSVSHYEIY 657 (903)
Q Consensus 582 ivQVT-~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~v-vva~~~~~il~~~~~~~~~~g~~~L~ 657 (903)
++=-. ...|++++.... .....+......|.+.+.. +..+ +-+..++.+.++... .+ ++.
T Consensus 242 la~g~~d~~i~~wd~~~~----------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~----~~--~~~ 305 (357)
T 4g56_B 242 FACGDETGNVSLVNIKNP----------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD----FS--EVF 305 (357)
T ss_dssp EEEEESSSCEEEEESSCG----------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT----SC--EEE
T ss_pred EEEeecccceeEEECCCC----------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC----CC--cEe
Confidence 22112 235777765432 1233443333457776664 3344 444455666554221 22 333
Q ss_pred EeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCC
Q 044070 658 EMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPK 725 (903)
Q Consensus 658 ~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~ 725 (903)
........|.++++.+.. ..+|+.|.+|++|++|.++..
T Consensus 306 --~~~~H~~~V~~vafsP~d---------------------------~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 306 --RDLSHRDFVTGVAWSPLD---------------------------HSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp --EECCCSSCEEEEEECSSS---------------------------TTEEEEEETTSCEEEEECC--
T ss_pred --EECCCCCCEEEEEEeCCC---------------------------CCEEEEEcCCCeEEEEECCCC
Confidence 233456789999986521 458889999999999999754
No 27
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.48 E-value=15 Score=46.63 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=40.2
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
..++++|..|++|++|++...+.+..+. +.. . ...++.+.. +..+|..|-.||.+..|.+..
T Consensus 1097 ~~~l~s~s~d~~v~iwd~~~~~~~~~l~-----------~h~-~-~v~~~~~s~-dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1097 ATKFSSTSADKTAKIWSFDLLSPLHELK-----------GHN-G-CVRCSAFSL-DGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp SSSCEEECCSSCCCEECSSSSSCSBCCC-----------CCS-S-CEEEEEECS-SSSEEEEEETTSCCCEEESSS
T ss_pred CCEEEEEcCCCcEEEEECCCcceeeeec-----------cCC-C-cEEEEEECC-CCCEEEEEeCCCEEEEEECCC
Confidence 4578899999999999987655332111 100 0 113333332 456899999999999888763
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.39 E-value=4.2 Score=44.04 Aligned_cols=117 Identities=7% Similarity=-0.049 Sum_probs=69.8
Q ss_pred CeeEEEEEecCC---EEEEEEeCC---cEEEEEeEEeccccceEEEEeeec--cCCCceeEEEccCCCCcccCCCCCccc
Q 044070 618 HVSISLGAVAHN---MIIVSTSNP---CFLFILGVRSLSVSHYEIYEMQHM--RLQSELSCISIPQKHPERRKSSSPISL 689 (903)
Q Consensus 618 ~~~I~~As~~~~---~vvva~~~~---~il~~~~~~~~~~g~~~L~~~~~~--~l~~eiscl~i~~~~~g~~~~~~~~~~ 689 (903)
...|.+.+...+ .++.+..++ .+.++... .+. +. .... .....|.++++.+..
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~----~~~-~~--~~~~~~~~~~~v~~~~~s~~~------------ 274 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR----NAN-TP--LQTLNQGHQKGILSLDWCHQD------------ 274 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT----STT-SC--SBCCCSCCSSCEEEEEECSSC------------
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC----CCC-CC--cEEeecCccCceeEEEeCCCC------------
Confidence 456777777632 455555454 55544221 110 11 1122 345778888886521
Q ss_pred cCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEec
Q 044070 690 VSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLR 769 (903)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~ 769 (903)
..+++.|..|++|++|++...+.+..+.. .. ....++.+..-+..+|..|-.
T Consensus 275 ---------------~~~l~s~~~dg~v~~wd~~~~~~~~~~~~----------~~---~~v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 275 ---------------EHLLLSSGRDNTVLLWNPESAEQLSQFPA----------RG---NWCFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp ---------------SSCEEEEESSSEEEEECSSSCCEEEEEEC----------SS---SCCCCEEECTTCTTEEEECCS
T ss_pred ---------------CCeEEEEeCCCCEEEeeCCCCccceeecC----------CC---CceEEEEECCCCCCEEEEEec
Confidence 46889999999999999876554322210 00 012455555444478999999
Q ss_pred CCcEEEEEecCC
Q 044070 770 NGMLLRFEWPPD 781 (903)
Q Consensus 770 ~G~l~~~~~~~~ 781 (903)
||.+..|.+...
T Consensus 327 d~~i~iw~~~~~ 338 (416)
T 2pm9_A 327 DNKIEVQTLQNL 338 (416)
T ss_dssp SSEEEEEESCCC
T ss_pred CCcEEEEEccCC
Confidence 999999998753
No 29
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=94.35 E-value=6.8 Score=42.10 Aligned_cols=107 Identities=8% Similarity=0.054 Sum_probs=58.7
Q ss_pred CeEEEEeCCCCEEEEEEEeCCC----ccEEEEceeccCCCCcceEEEECC--------CeEEEEEeeCCeEEEEEeCCce
Q 044070 392 PKMVFCVDTGEFFMIEIAFGSD----GHKVHLSECLYKGPPCKALLWVEG--------RFLSAFVEMGDGMVLKEENGRL 459 (903)
Q Consensus 392 ~~~LL~~e~G~l~~l~l~~~~~----~~~v~~~~~~~~~~~~ssl~~l~~--------~~lFvgS~~gds~L~~~~~~~~ 459 (903)
..++.+..+|.+....+..... .....+ .+......++....+ .+|+.|+.-|.=.+|.+.....
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~ 103 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH---FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 103 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE---ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEE---ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc
Confidence 5677889999998877764331 011111 122233455665554 5778888777777777764321
Q ss_pred ---EEeeeeccc------ccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEe
Q 044070 460 ---VYTSPIQNI------APILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIR 503 (903)
Q Consensus 460 ---~~~~~l~N~------gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr 503 (903)
..+..+... ++|..+++..........++++++ .+|.+++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd 154 (397)
T 1sq9_A 104 TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD--VKGTTYIWK 154 (397)
T ss_dssp TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE--TTSCEEEEE
T ss_pred cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe--CCCcEEEEe
Confidence 113445544 889999887211012233144443 357777764
No 30
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=94.34 E-value=7.2 Score=42.34 Aligned_cols=307 Identities=12% Similarity=0.019 Sum_probs=146.9
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEE--CCCeEEEEEeeCCeEEEEEeCCceEEeeee-cc
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWV--EGRFLSAFVEMGDGMVLKEENGRLVYTSPI-QN 467 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l--~~~~lFvgS~~gds~L~~~~~~~~~~~~~l-~N 467 (903)
+..++.+..+|.++...+.... . ..........++..+ ++.+|+.|+.-|.=.+|.+... +....+ ..
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~----~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h 138 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRD----G---SKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREIDQAH 138 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEE----T---TTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSC--EEEEETTSS
T ss_pred CCeEEEEEcCCcEEEEEecccc----e---eeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCc--ceeeecccc
Confidence 4557778888888766543211 0 001111122223233 4567777776665555554332 334444 45
Q ss_pred cccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEec--cCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecC
Q 044070 468 IAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS--GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVE 545 (903)
Q Consensus 468 ~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~--gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~ 545 (903)
-++|.+++.... . +++++++ .+|.+++..- +-....+.. .-..++.+.... ...+|+.+..+
T Consensus 139 ~~~v~~~~~~~~----~-~~l~s~s--~d~~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~---~~~~l~s~~~d 202 (420)
T 3vl1_A 139 VSEITKLKFFPS----G-EALISSS--QDMQLKIWSVKDGSNPRTLIG------HRATVTDIAIID---RGRNVLSASLD 202 (420)
T ss_dssp SSCEEEEEECTT----S-SEEEEEE--TTSEEEEEETTTCCCCEEEEC------CSSCEEEEEEET---TTTEEEEEETT
T ss_pred cCccEEEEECCC----C-CEEEEEe--CCCeEEEEeCCCCcCceEEcC------CCCcEEEEEEcC---CCCEEEEEcCC
Confidence 578888877531 2 2333333 4677877653 222222211 112345554432 23456655555
Q ss_pred ce-EEEEeCCc--cccccC------------------------------cCCccCCCCeEEEEeeCCCeEEEEEcCcEEE
Q 044070 546 ET-RVLRVGLN--FTDVTD------------------------------SVGFRPDVCTLACGLVADGLLVQIHQNAVRL 592 (903)
Q Consensus 546 ~T-~vl~~~~~--~~e~~~------------------------------~~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl 592 (903)
.+ +++.+... +..+.. ...|..+...|++|.. ...|++
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~i 273 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV---------SGVITV 273 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET---------TSCEEE
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC---------CCeEEE
Confidence 44 35544321 111110 0123344455555543 123666
Q ss_pred EccCcccccCCCCCCCCeeeeEec-CCeeEEEEEecC--C-EEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCce
Q 044070 593 CMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAVAH--N-MIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSEL 668 (903)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~~~--~-~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~ei 668 (903)
++.... ........ ....|.+.+... . +++.+..++.+.++... .+...+.. ........|
T Consensus 274 ~d~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~----~~~~~~~~-~~~~~~~~v 338 (420)
T 3vl1_A 274 HNVFSK----------EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR----SPECPVGE-FLINEGTPI 338 (420)
T ss_dssp EETTTC----------CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT----CTTSCSEE-EEESTTSCE
T ss_pred EECCCC----------ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC----CCcCchhh-hhccCCCCc
Confidence 665432 12333332 234577766663 3 56666666666554322 22111111 112235667
Q ss_pred eEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCC
Q 044070 669 SCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISG 748 (903)
Q Consensus 669 scl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~ 748 (903)
.++.... ..+++.|.+|++|++|.+...+....+...... ..+... ..
T Consensus 339 ~~~~~~~-----------------------------~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~--~~~~~~-~~ 386 (420)
T 3vl1_A 339 NNVYFAA-----------------------------GALFVSSGFDTSIKLDIISDPESERPAIEFETP--TFLVSN-DD 386 (420)
T ss_dssp EEEEEET-----------------------------TEEEEEETTTEEEEEEEECCTTCCSCEECTTSC--EEECCS-SC
T ss_pred eEEEeCC-----------------------------CCEEEEecCCccEEEEeccCCCCCccceeccCc--cEEccC-Cc
Confidence 7776542 468999999999999998764322111100000 000000 00
Q ss_pred CCcceeEEeecCc--cEEEEEecCCcEEEEEec
Q 044070 749 CIPQDVRLVLADQ--FYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 749 ~~p~si~l~~~~~--~~L~vgl~~G~l~~~~~~ 779 (903)
...++.+..-+. -.|++.-.+|.+..|.++
T Consensus 387 -~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 387 -AVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp -CCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred -ceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 113555544333 256777788999999875
No 31
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.32 E-value=8.8 Score=45.99 Aligned_cols=227 Identities=8% Similarity=0.005 Sum_probs=106.5
Q ss_pred CCeEEEEEeeCCeEEEEEeCCceEEeeeec-ccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecC
Q 044070 437 GRFLSAFVEMGDGMVLKEENGRLVYTSPIQ-NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTA 515 (903)
Q Consensus 437 ~~~lFvgS~~gds~L~~~~~~~~~~~~~l~-N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~ 515 (903)
+.+|.+|+. |+.+.-++-..-..+..+. .-+||..++.... .+.++++|. +|.+++....-+ +.+..+.
T Consensus 25 ~~~la~~~~--~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~--dg~i~vw~~~~~-~~~~~~~ 94 (814)
T 3mkq_A 25 EPWVLTTLY--SGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR-----KNWIIVGSD--DFRIRVFNYNTG-EKVVDFE 94 (814)
T ss_dssp SSEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-----GTEEEEEET--TSEEEEEETTTC-CEEEEEE
T ss_pred CCEEEEEeC--CCEEEEEECCCCceEEEEecCCCcEEEEEEeCC-----CCEEEEEeC--CCeEEEEECCCC-cEEEEEe
Confidence 345555654 3333333322223344444 4578888877642 233444433 788888864322 1122221
Q ss_pred CCCCCccEEEEeeecCCCCcceEEEEEecCceE-EEEeCCccccccCcCCccCCCCeEEEEee-C-CC-eEEEEEc-CcE
Q 044070 516 PIYQGITGTWTVRMKVSDPYHSFLVLSFVEETR-VLRVGLNFTDVTDSVGFRPDVCTLACGLV-A-DG-LLVQIHQ-NAV 590 (903)
Q Consensus 516 ~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~-vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~-~-~~-~ivQVT~-~~i 590 (903)
..-..++.+.... ...+|+.+..+.+. ++.+........ .+......+.+..+ . ++ .++=.+. ..|
T Consensus 95 ---~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 95 ---AHPDYIRSIAVHP---TKPYVLSGSDDLTVKLWNWENNWALEQ---TFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp ---CCSSCEEEEEECS---SSSEEEEEETTSEEEEEEGGGTSEEEE---EEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred ---cCCCCEEEEEEeC---CCCEEEEEcCCCEEEEEECCCCceEEE---EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 1223456665542 24567776666554 555532211100 00001111221111 1 11 2222222 335
Q ss_pred EEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEEe----cCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCC
Q 044070 591 RLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAV----AHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQ 665 (903)
Q Consensus 591 rl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~----~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~ 665 (903)
++.+..... ....+.. ....|...+. .+++++.+..++.+..+... .+ +.... -....
T Consensus 166 ~vwd~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~--~~~~~-~~~~~ 228 (814)
T 3mkq_A 166 KVWSLGQST----------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TK--SCVAT-LEGHM 228 (814)
T ss_dssp EEEETTCSS----------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----TT--EEEEE-EECCS
T ss_pred EEEECCCCc----------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----CC--cEEEE-EcCCC
Confidence 566543221 1222222 2133444444 34566666556665544221 22 22111 11245
Q ss_pred CceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCC
Q 044070 666 SELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEG 727 (903)
Q Consensus 666 ~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~ 727 (903)
..|+|+++.+. ..++++|..|++|++|++...+.
T Consensus 229 ~~v~~~~~~~~----------------------------~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 229 SNVSFAVFHPT----------------------------LPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp SCEEEEEECSS----------------------------SSEEEEEETTSCEEEEETTTCSE
T ss_pred CCEEEEEEcCC----------------------------CCEEEEEeCCCeEEEEECCCCcE
Confidence 67899988662 45899999999999999876543
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.15 E-value=2.6 Score=45.51 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=39.8
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..+++.|..|++|+||++...+.+..+.. .. . ...++.+..-+..+|..|-.||.+..|.+.
T Consensus 227 ~~~l~sg~~dg~v~~wd~~~~~~~~~~~~----------h~-~--~v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 227 SEVFVFGDENGTVSLVDTKSTSCVLSSAV----------HS-Q--CVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp TTEEEEEETTSEEEEEESCC--CCEEEEC----------CS-S--CEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred CcceEEeccCCcEEEEECCCCcEEEEEcC----------CC-C--CEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 46889999999999999876654433211 00 0 114555544455678889999999887543
No 33
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.10 E-value=12 Score=44.16 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=52.3
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEEC-CCeEEEEEeeCCeEEEEEeCCceEEeeeec-cc
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVE-GRFLSAFVEMGDGMVLKEENGRLVYTSPIQ-NI 468 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~-~~~lFvgS~~gds~L~~~~~~~~~~~~~l~-N~ 468 (903)
.+.++-+..||.+..-.+..+............+......++..-. +.+|+.||.-|.=.+|.+... ..+..+. .-
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~ 472 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHT 472 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCS
T ss_pred CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--cceeEEeCCC
Confidence 3456678899988877765443211111110112222334455444 455666665444444443322 2233333 45
Q ss_pred ccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEec
Q 044070 469 APILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504 (903)
Q Consensus 469 gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~ 504 (903)
++|.++++.. +...|++++ .+|.+++...
T Consensus 473 ~~v~~~~~s~----~~~~l~s~s---~D~~i~iwd~ 501 (694)
T 3dm0_A 473 KDVLSVAFSL----DNRQIVSAS---RDRTIKLWNT 501 (694)
T ss_dssp SCEEEEEECT----TSSCEEEEE---TTSCEEEECT
T ss_pred CCEEEEEEeC----CCCEEEEEe---CCCEEEEEEC
Confidence 6787777643 223454443 4688888763
No 34
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=94.06 E-value=7.2 Score=41.30 Aligned_cols=119 Identities=8% Similarity=0.059 Sum_probs=71.8
Q ss_pred eeEEEEEec----CCEEEEEEeCCcEEEEEeEEeccccceEEEEe-eeccCCCceeEEEccCCCCcccCCCCCccccCCC
Q 044070 619 VSISLGAVA----HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEM-QHMRLQSELSCISIPQKHPERRKSSSPISLVSNS 693 (903)
Q Consensus 619 ~~I~~As~~----~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~-~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~ 693 (903)
..|.+.+.. +.+++.+..++.+.++... .+ +.... ........|.|+++.+...
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~----~~--~~~~~~~~~~~~~~v~~~~~~~~~~--------------- 114 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEE----NG--RWSQIAVHAVHSASVNSVQWAPHEY--------------- 114 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEE----TT--EEEEEEEECCCSSCEEEEEECCGGG---------------
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC----CC--ceeEeeeecCCCcceEEEEeCCCCC---------------
Confidence 456666654 4566666667777665333 22 22222 2223567899999876310
Q ss_pred CCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec------------Cc
Q 044070 694 SVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA------------DQ 761 (903)
Q Consensus 694 ~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~------------~~ 761 (903)
..++++|..|++|++|.+...+......... .. ....++.+... +.
T Consensus 115 -----------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------~~---~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 115 -----------GPLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HA---IGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp -----------CSEEEEEETTSEEEEEECCTTSCCCEEEEEC--------CT---TCEEEEEECCCC----------CTT
T ss_pred -----------CCEEEEecCCCcEEEEecCCCCceeeEEecC--------CC---CceEEEEEcCccccccccccCCCCC
Confidence 3589999999999999998654322221100 00 01134444332 36
Q ss_pred cEEEEEecCCcEEEEEecC
Q 044070 762 FYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 762 ~~L~vgl~~G~l~~~~~~~ 780 (903)
.+|++|..||.+..|.+..
T Consensus 173 ~~l~~~~~dg~i~i~d~~~ 191 (379)
T 3jrp_A 173 RKFVTGGADNLVKIWKYNS 191 (379)
T ss_dssp CEEEEEETTSCEEEEEEET
T ss_pred CEEEEEeCCCeEEEEEecC
Confidence 7899999999999998863
No 35
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=93.97 E-value=7.4 Score=41.15 Aligned_cols=115 Identities=2% Similarity=-0.167 Sum_probs=63.5
Q ss_pred CCEEEEEEeCCcEEEEEeEEeccccceEEEEee-eccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccce
Q 044070 628 HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQ-HMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGY 706 (903)
Q Consensus 628 ~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~-~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (903)
+.+++.+..++.+.++... .+........ .......|.|+++.+... ...
T Consensus 172 ~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-------------------------~~~ 222 (379)
T 3jrp_A 172 SRKFVTGGADNLVKIWKYN----SDAQTYVLESTLEGHSDWVRDVAWSPTVL-------------------------LRS 222 (379)
T ss_dssp TCEEEEEETTSCEEEEEEE----TTTTEEEEEEEECCCSSCEEEEEECCCCS-------------------------SSE
T ss_pred CCEEEEEeCCCeEEEEEec----CCCcceeeEEEEecccCcEeEEEECCCCC-------------------------CCC
Confidence 4556666667766655332 1111111221 223457789998876310 036
Q ss_pred EEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 707 TFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 707 ~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
++++|..|++|++|++...+...... ... ..... ....++.+.. +..+|++|..||.+..|.++.
T Consensus 223 ~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~---~~~~~---~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 223 YLASVSQDRTCIIWTQDNEQGPWKKT--LLK---EEKFP---DVLWRASWSL-SGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEE--ESS---SSCCS---SCEEEEEECS-SSCCEEEEESSSSEEEEEEEE
T ss_pred eEEEEeCCCEEEEEeCCCCCccceee--eec---cccCC---CcEEEEEEcC-CCCEEEEecCCCcEEEEeCCC
Confidence 89999999999999997653211111 000 00000 0112333332 356788899999999999874
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=93.81 E-value=7.3 Score=40.51 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=39.6
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..+++.|..|++|++|++...+.+..+.. .. ....++.+.. +..+|+.|..||.+..|.+.
T Consensus 119 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~---~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~ 179 (312)
T 4ery_A 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPA----------HS---DPVSAVHFNR-DGSLIVSSSYDGLCRIWDTA 179 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECC----------CS---SCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCCcEEEEECCCCEEEEEecC----------CC---CcEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Confidence 45899999999999999876553322210 00 0112333322 45689999999999988865
No 37
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.78 E-value=7.8 Score=40.72 Aligned_cols=270 Identities=8% Similarity=-0.047 Sum_probs=122.6
Q ss_pred CeEEEEEeeCCeEEEEEeCCceEEeeee-cccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCC
Q 044070 438 RFLSAFVEMGDGMVLKEENGRLVYTSPI-QNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAP 516 (903)
Q Consensus 438 ~~lFvgS~~gds~L~~~~~~~~~~~~~l-~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~ 516 (903)
.+|+.|+.-|.=.+|.+......+...+ ..-++|.++++.. +...|++++ .+|.+++..-.-+-. +...
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~---~dg~v~iwd~~~~~~-~~~~-- 124 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD----DGSKVFTAS---CDKTAKMWDLSSNQA-IQIA-- 124 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT----TSSEEEEEE---TTSEEEEEETTTTEE-EEEE--
T ss_pred eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc----CCCEEEEEc---CCCcEEEEEcCCCCc-eeec--
Confidence 4666676666666666654222222223 3567888887754 223344333 468888875432221 1111
Q ss_pred CCCCccEEEEeeecCCCCcceEEEEEecCceE-EEEeCCccccccCcCCccCCCCeEEEEeeCCCeEEEEEcCcEEEEcc
Q 044070 517 IYQGITGTWTVRMKVSDPYHSFLVLSFVEETR-VLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMP 595 (903)
Q Consensus 517 ~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~-vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~ 595 (903)
..-..++.+.... .....+|+.+..+.+. ++.+... +.+. .+........+....+..++-.....+++++.
T Consensus 125 --~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (368)
T 3mmy_A 125 --QHDAPVKTIHWIK-APNYSCVMTGSWDKTLKFWDTRSS-NPMM---VLQLPERCYCADVIYPMAVVATAERGLIVYQL 197 (368)
T ss_dssp --ECSSCEEEEEEEE-CSSCEEEEEEETTSEEEEECSSCS-SCSE---EEECSSCEEEEEEETTEEEEEEGGGCEEEEEC
T ss_pred --cccCceEEEEEEe-CCCCCEEEEccCCCcEEEEECCCC-cEEE---EEecCCCceEEEecCCeeEEEeCCCcEEEEEe
Confidence 1223345554411 1224566666555553 5544221 1111 12222233333333333444445556666655
Q ss_pred CcccccCCCCCCCCeeeeEe-c--CCeeEEEEEecCCE----EEEEEeCCcEEEEEeEEeccccceEEEEe-eec-----
Q 044070 596 TMVAHSGGIPLSYPVCTSWF-P--EHVSISLGAVAHNM----IIVSTSNPCFLFILGVRSLSVSHYEIYEM-QHM----- 662 (903)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~w~-~--~~~~I~~As~~~~~----vvva~~~~~il~~~~~~~~~~g~~~L~~~-~~~----- 662 (903)
.... ....... + ....+......... ++.+..++.+.++..... .....+... ...
T Consensus 198 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 198 ENQP---------SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP--NPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp SSSC---------EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS--CHHHHSEEEECSEEC---
T ss_pred cccc---------chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC--Cccccceeeeeeeccccc
Confidence 4321 1111111 1 11223333332222 666666666555432210 000001110 000
Q ss_pred ----cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeee
Q 044070 663 ----RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVL 738 (903)
Q Consensus 663 ----~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~ 738 (903)
.....|.|+++.+. ..+|++|.+|+.|++|++...+.+..+ .
T Consensus 267 ~~~~~~~~~v~~~~~sp~----------------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~- 312 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPV----------------------------HGTLATVGSDGRFSFWDKDARTKLKTS-----E- 312 (368)
T ss_dssp -CCCEEECCEEEEEECTT----------------------------TCCEEEEETTSCEEEEETTTTEEEEEC-----C-
T ss_pred ccccccccceEEEEEecC----------------------------CCEEEEEccCCeEEEEECCCCcEEEEe-----c-
Confidence 11125888888662 458899999999999998765433211 1
Q ss_pred cccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEE
Q 044070 739 TNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFE 777 (903)
Q Consensus 739 ~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~ 777 (903)
+.. ....++.+.. +..+|..|-.||....++
T Consensus 313 ----~~~---~~v~~~~~s~-~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 313 ----QLD---QPISACCFNH-NGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp ----CCS---SCEEEEEECT-TSSCEEEEECCCSTTCGG
T ss_pred ----CCC---CCceEEEECC-CCCeEEEEeccccccccc
Confidence 000 0113443332 356677887777544333
No 38
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.74 E-value=8.8 Score=41.25 Aligned_cols=234 Identities=9% Similarity=0.003 Sum_probs=113.9
Q ss_pred ceEEEECCCeEEEEEeeCCeEEEEEeCCc-eEEee--eecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccC
Q 044070 430 KALLWVEGRFLSAFVEMGDGMVLKEENGR-LVYTS--PIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGI 506 (903)
Q Consensus 430 ssl~~l~~~~lFvgS~~gds~L~~~~~~~-~~~~~--~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi 506 (903)
.++....++.|+.|+.-|.=.+|.+.... +.... ....-++|..+++.. +...|++++ .+|.+++..-.=
T Consensus 86 ~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp----dg~~l~sgs---~d~~i~iwd~~~ 158 (344)
T 4gqb_B 86 ADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS----SGTQAVSGS---KDICIKVWDLAQ 158 (344)
T ss_dssp EEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT----TSSEEEEEE---TTSCEEEEETTT
T ss_pred EEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC----CCCEEEEEe---CCCeEEEEECCC
Confidence 45666778888888876666667765432 22221 112346788887643 122343332 467788774221
Q ss_pred ceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCce-EEEEeCC--ccccccCcCCccCCCCeEEEEee-C-CC-
Q 044070 507 SLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEET-RVLRVGL--NFTDVTDSVGFRPDVCTLACGLV-A-DG- 580 (903)
Q Consensus 507 ~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T-~vl~~~~--~~~e~~~~~~f~~~~~Tl~a~~~-~-~~- 580 (903)
+ +.+..+. ..-..++.+.....+ ..+|+..-.+.+ +++.+.. ...++... .....+.+-.+ . ++
T Consensus 159 ~-~~~~~~~---~h~~~V~~~~~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~ 228 (344)
T 4gqb_B 159 Q-VVLSSYR---AHAAQVTCVAASPHK--DSVFLSCSEDNRILLWDTRCPKPASQIGCS----APGYLPTSLAWHPQQSE 228 (344)
T ss_dssp T-EEEEEEC---CCSSCEEEEEECSSC--TTEEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTT
T ss_pred C-cEEEEEc---CcCCceEEEEecCCC--CCceeeeccccccccccccccceeeeeecc----eeeccceeeeecCCCCc
Confidence 1 2222221 122345555553221 223443333444 4554421 12221110 00111111111 1 12
Q ss_pred eEEEEEc-CcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCE-EEEEEeCCcEEEEEeEEeccccceEE
Q 044070 581 LLVQIHQ-NAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNM-IIVSTSNPCFLFILGVRSLSVSHYEI 656 (903)
Q Consensus 581 ~ivQVT~-~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~-vvva~~~~~il~~~~~~~~~~g~~~L 656 (903)
.++=-.. ..|++.+.... +.+..+......|.+.+.. +.. |+-+..++.+.++ +. ..+ ++
T Consensus 229 ~l~sg~~dg~v~~wd~~~~----------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw-d~---~~~--~~ 292 (344)
T 4gqb_B 229 VFVFGDENGTVSLVDTKST----------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL-DS---SLS--EL 292 (344)
T ss_dssp EEEEEETTSEEEEEESCC------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEE-CT---TCC--EE
T ss_pred ceEEeccCCcEEEEECCCC----------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE-EC---CCC--cE
Confidence 2222222 34777775433 2344444433457777765 334 4444456666554 22 122 34
Q ss_pred EEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCC
Q 044070 657 YEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPK 725 (903)
Q Consensus 657 ~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~ 725 (903)
.. .......|.++++.+.. ..+++.|.+|++|++|.++..
T Consensus 293 ~~--~~~H~~~V~~v~~sp~~---------------------------~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 293 FR--SQAHRDFVRDATWSPLN---------------------------HSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EE--ECCCSSCEEEEEECSSS---------------------------TTEEEEEETTSCEEEEECCC-
T ss_pred EE--EcCCCCCEEEEEEeCCC---------------------------CeEEEEEcCCCeEEEEECCCC
Confidence 32 23456789999987631 357888899999999999753
No 39
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=93.42 E-value=11 Score=41.45 Aligned_cols=142 Identities=10% Similarity=0.082 Sum_probs=84.5
Q ss_pred CCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEecCCEEEEEEeCCcEEEEEeEE
Q 044070 568 DVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVR 647 (903)
Q Consensus 568 ~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~~~~vvva~~~~~il~~~~~~ 647 (903)
+...|++|.. + ..|++.+.... ............|.+.+.++++++.+..++.+.++...
T Consensus 182 ~~~~l~sg~~-d--------g~i~vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~- 241 (435)
T 1p22_A 182 DERVIITGSS-D--------STVRVWDVNTG----------EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA- 241 (435)
T ss_dssp CSSEEEEEET-T--------SCEEEEESSSC----------CEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECS-
T ss_pred CCCEEEEEcC-C--------CeEEEEECCCC----------cEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCC-
Confidence 4456666653 2 34666665432 23344433344688888888888888778877765332
Q ss_pred eccccceEEEE-eeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCC
Q 044070 648 SLSVSHYEIYE-MQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKE 726 (903)
Q Consensus 648 ~~~~g~~~L~~-~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~ 726 (903)
.+. .+.. .........|.|++.. ..++++|+.|++|++|++...+
T Consensus 242 ---~~~-~~~~~~~~~~~~~~v~~~~~~------------------------------~~~l~s~~~dg~i~vwd~~~~~ 287 (435)
T 1p22_A 242 ---SPT-DITLRRVLVGHRAAVNVVDFD------------------------------DKYIVSASGDRTIKVWNTSTCE 287 (435)
T ss_dssp ---SSS-CCEEEEEECCCSSCEEEEEEE------------------------------TTEEEEEETTSEEEEEETTTCC
T ss_pred ---CCC-CceeeeEecCCCCcEEEEEeC------------------------------CCEEEEEeCCCeEEEEECCcCc
Confidence 111 1111 1222345677787761 4588999999999999987655
Q ss_pred CeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 727 GLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 727 ~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
.+..+. . ....+.-+..+..+|++|..||.+..|.+.
T Consensus 288 ~~~~~~-----------~-----~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 288 FVRTLN-----------G-----HKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEEEE-----------C-----CSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEc-----------C-----CCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 432221 0 011222222346789999999999988875
No 40
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=93.35 E-value=9.1 Score=40.20 Aligned_cols=133 Identities=9% Similarity=0.022 Sum_probs=72.0
Q ss_pred eeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCcc
Q 044070 611 CTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPIS 688 (903)
Q Consensus 611 ~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~ 688 (903)
...+......|.+.+.. +.+++.+..++.+.++... ++ +. .........|.++++.+.
T Consensus 67 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~--~~--~~~~~~~~~v~~~~~~~~------------ 126 (369)
T 3zwl_B 67 LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS----NG--QC--VATWKSPVPVKRVEFSPC------------ 126 (369)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT----TC--CE--EEEEECSSCEEEEEECTT------------
T ss_pred hhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----CC--cE--EEEeecCCCeEEEEEccC------------
Confidence 33443333457666665 4566666666766655322 22 22 223346788999988762
Q ss_pred ccCCCCCCCCCCccccceEEEEEecC-----CeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccE
Q 044070 689 LVSNSSVPALPAGVIIGYTFVIGTHR-----PSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFY 763 (903)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~l~vg~~d-----~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~ 763 (903)
..+++++..+ +.|.+|.+........+..........+..........++.+.. +..+
T Consensus 127 ----------------~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 189 (369)
T 3zwl_B 127 ----------------GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKY 189 (369)
T ss_dssp ----------------SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCE
T ss_pred ----------------CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCE
Confidence 4588888888 99999999865432222110000000000000000112222221 3568
Q ss_pred EEEEecCCcEEEEEecC
Q 044070 764 VLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 764 L~vgl~~G~l~~~~~~~ 780 (903)
|++|..+|.+..|.+..
T Consensus 190 l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSN 206 (369)
T ss_dssp EEEEETTSEEEEEETTT
T ss_pred EEEEcCCCEEEEEECCC
Confidence 99999999999888753
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=93.05 E-value=2.9 Score=46.13 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=49.6
Q ss_pred CCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCC
Q 044070 664 LQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMG 743 (903)
Q Consensus 664 l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~ 743 (903)
....|.|+++.+. ..+|++|+.|++|++|++...+.+..+. .+
T Consensus 213 h~~~v~~~~~s~~----------------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~ 255 (437)
T 3gre_A 213 RHGAVSSICIDEE----------------------------CCVLILGTTRGIIDIWDIRFNVLIRSWS---------FG 255 (437)
T ss_dssp GGCCEEEEEECTT----------------------------SCEEEEEETTSCEEEEETTTTEEEEEEB---------CT
T ss_pred CCCceEEEEECCC----------------------------CCEEEEEcCCCeEEEEEcCCccEEEEEe---------cC
Confidence 4578999998652 4689999999999999987644322211 01
Q ss_pred CCCCCCCcceeEEee-c--CccEEEEEecCCcEEEEEec
Q 044070 744 TAISGCIPQDVRLVL-A--DQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 744 ~~~s~~~p~si~l~~-~--~~~~L~vgl~~G~l~~~~~~ 779 (903)
.. ....++.+.. + +..+|..|..||.+..|.+.
T Consensus 256 ~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 256 DH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp TC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred CC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 10 0012333332 2 35689999999999888875
No 42
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=92.74 E-value=10 Score=41.35 Aligned_cols=120 Identities=10% Similarity=0.027 Sum_probs=66.3
Q ss_pred eeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCC
Q 044070 619 VSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVP 696 (903)
Q Consensus 619 ~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~ 696 (903)
..|.+.+.. +.+++.+..++.+.+.... ++ +. .........+.++++.+..
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~----~~--~~--~~~~~~~~~v~~~~~~~~~------------------- 218 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLR----TG--QC--SLTLSIEDGVTTVAVSPGD------------------- 218 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETT----TT--EE--EEEEECSSCEEEEEECSTT-------------------
T ss_pred CCEEEEEEcCCCCEEEEecCCCcEEEEECC----CC--ee--EEEEEcCCCcEEEEEECCC-------------------
Confidence 346666554 4455555556665554221 22 22 2233456778888876521
Q ss_pred CCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEE
Q 044070 697 ALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRF 776 (903)
Q Consensus 697 ~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~ 776 (903)
..++++|..|++|++|.+.....+..+...... ..+.. ....++.+.. +..+|+.|-.||.+..|
T Consensus 219 --------~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~---~~~h~---~~v~~v~~~~-~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 219 --------GKYIAAGSLDRAVRVWDSETGFLVERLDSENES---GTGHK---DSVYSVVFTR-DGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp --------CCEEEEEETTSCEEEEETTTCCEEEEEC---------CCCS---SCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred --------CCEEEEEcCCCcEEEEECCCCcEEEeecccccC---CCCCC---CCEEEEEECC-CCCEEEEEeCCCEEEEE
Confidence 468999999999999998765533222110000 00100 0112333322 35679999999999999
Q ss_pred EecC
Q 044070 777 EWPP 780 (903)
Q Consensus 777 ~~~~ 780 (903)
.+..
T Consensus 284 d~~~ 287 (393)
T 1erj_A 284 NLQN 287 (393)
T ss_dssp EC--
T ss_pred ECCC
Confidence 8764
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=92.33 E-value=14 Score=39.65 Aligned_cols=112 Identities=10% Similarity=0.040 Sum_probs=65.9
Q ss_pred eeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCC
Q 044070 619 VSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVP 696 (903)
Q Consensus 619 ~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~ 696 (903)
..|.+.+.. +.+++.+..++.+.++... .+ +.... .......|.++++.+.
T Consensus 248 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~--~~~~~-~~~~~~~i~~~~~~~~-------------------- 300 (425)
T 1r5m_A 248 GPISVLEFNDTNKLLLSASDDGTLRIWHGG----NG--NSQNC-FYGHSQSIVSASWVGD-------------------- 300 (425)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEECSS----SB--SCSEE-ECCCSSCEEEEEEETT--------------------
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECC----CC--ccceE-ecCCCccEEEEEECCC--------------------
Confidence 456665554 4566666666766554221 11 11111 1234567888888651
Q ss_pred CCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEE
Q 044070 697 ALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRF 776 (903)
Q Consensus 697 ~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~ 776 (903)
. ++++|..|+.|++|++...+.+..+.. .. ....++.+.. +..+|.+|..||.+..|
T Consensus 301 --------~-~l~~~~~d~~i~i~d~~~~~~~~~~~~----------~~---~~i~~~~~s~-~~~~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 301 --------D-KVISCSMDGSVRLWSLKQNTLLALSIV----------DG---VPIFAGRISQ-DGQKYAVAFMDGQVNVY 357 (425)
T ss_dssp --------T-EEEEEETTSEEEEEETTTTEEEEEEEC----------TT---CCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred --------C-EEEEEeCCCcEEEEECCCCcEeEeccc----------CC---ccEEEEEEcC-CCCEEEEEECCCeEEEE
Confidence 3 888899999999999876543222110 00 0113333332 35689999999999999
Q ss_pred EecC
Q 044070 777 EWPP 780 (903)
Q Consensus 777 ~~~~ 780 (903)
.+..
T Consensus 358 ~~~~ 361 (425)
T 1r5m_A 358 DLKK 361 (425)
T ss_dssp ECHH
T ss_pred ECCC
Confidence 9863
No 44
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=92.29 E-value=14 Score=39.51 Aligned_cols=296 Identities=8% Similarity=0.016 Sum_probs=131.2
Q ss_pred EEEEeeccCCCCCCeEEEEeCCCCEEEEEEEeCCCccEEEEce--ec------cCCCCcceEEEEC-C-CeEEEEEeeCC
Q 044070 379 VCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSE--CL------YKGPPCKALLWVE-G-RFLSAFVEMGD 448 (903)
Q Consensus 379 ~~~~~~~~~~~~~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~--~~------~~~~~~ssl~~l~-~-~~lFvgS~~gd 448 (903)
+++.+|.|. ++..++.+..+|.+....+............. .. +......++.... + .+++.|+.-|.
T Consensus 46 v~~~~~s~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 46 INTLDIEPV--EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp EEEEEECTT--TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred EEEEEEecC--CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 444445442 25677888999999888776432211111000 00 1122334555554 3 46666655444
Q ss_pred eEEEEEeCCceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEee
Q 044070 449 GMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVR 528 (903)
Q Consensus 449 s~L~~~~~~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~ 528 (903)
=.+|.+. ..+....+..-+++..+...... ....++++++ .+|.+++..-.-+ +.+..+. ..-..+..+.
T Consensus 124 i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~v~~~d~~~~-~~~~~~~---~~~~~v~~~~ 193 (408)
T 4a11_B 124 LKVWDTN--TLQTADVFNFEETVYSHHMSPVS--TKHCLVAVGT--RGPKVQLCDLKSG-SCSHILQ---GHRQEILAVS 193 (408)
T ss_dssp EEEEETT--TTEEEEEEECSSCEEEEEECSSC--SSCCEEEEEE--SSSSEEEEESSSS-CCCEEEC---CCCSCEEEEE
T ss_pred EEEeeCC--CCccceeccCCCceeeeEeecCC--CCCcEEEEEc--CCCeEEEEeCCCc-ceeeeec---CCCCcEEEEE
Confidence 4444333 33445555556677666665432 1223444443 4577777653211 1111121 1122344555
Q ss_pred ecCCCCcceE-EEEEecCce-EEEEeCCc---cccccC---------cCCccCCCCeEEEEee-CCC-eEEEEE-cCcEE
Q 044070 529 MKVSDPYHSF-LVLSFVEET-RVLRVGLN---FTDVTD---------SVGFRPDVCTLACGLV-ADG-LLVQIH-QNAVR 591 (903)
Q Consensus 529 ~~~~~~~~~~-LvlS~~~~T-~vl~~~~~---~~e~~~---------~~~f~~~~~Tl~a~~~-~~~-~ivQVT-~~~ir 591 (903)
... ...+ ++.+..+.+ .++.+... +..+.. ...+......+.+-.+ .++ .++=.. ...|+
T Consensus 194 ~~~---~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 194 WSP---RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp ECS---SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ECC---CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 432 2333 444444444 46655321 111000 0000111112222222 222 222222 23466
Q ss_pred EEccCcccccCCCCCCCCeeeeEecCCeeEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEE
Q 044070 592 LCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCI 671 (903)
Q Consensus 592 l~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl 671 (903)
+.+.......... ..... ...........+...+..++++..++.+.++... ++ +.... -......|.|+
T Consensus 271 vwd~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~----~~--~~~~~-~~~~~~~v~~~ 340 (408)
T 4a11_B 271 LWNSSNGENTLVN--YGKVC-NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY----SG--EQITM-LKGHYKTVDCC 340 (408)
T ss_dssp EEETTTCCBCCCC--CCCCC-CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT----TC--CEEEE-ECCCSSCEEEE
T ss_pred EEECCCCccceec--ccccc-ccccccceeEEecCCCceEEEEecCCEEEEEECc----CC--cceee-eccCCCeEEEE
Confidence 6665432100000 00000 0000112233333345666666667766554322 22 22211 12345788999
Q ss_pred EccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCC
Q 044070 672 SIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEG 727 (903)
Q Consensus 672 ~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~ 727 (903)
++.+. ..+|+.|..|+.|++|++...+.
T Consensus 341 ~~s~~----------------------------~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 341 VFQSN----------------------------FQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EEETT----------------------------TTEEEEEETTSCEEEEEECC---
T ss_pred EEcCC----------------------------CCEEEEECCCCeEEEEeCCCCCc
Confidence 88762 46899999999999999976553
No 45
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.07 E-value=25 Score=41.98 Aligned_cols=234 Identities=6% Similarity=-0.014 Sum_probs=114.7
Q ss_pred cccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCce
Q 044070 468 IAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEET 547 (903)
Q Consensus 468 ~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T 547 (903)
-++|..+++-. +. +.+++++ .+|.+++....-+- .+..+..... .+..+.... ...+|+.+..+.+
T Consensus 13 ~~~v~~i~~sp----~~-~~la~~~--~~g~v~iwd~~~~~-~~~~~~~~~~---~v~~~~~s~---~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 13 SDRVKGIDFHP----TE-PWVLTTL--YSGRVEIWNYETQV-EVRSIQVTET---PVRAGKFIA---RKNWIIVGSDDFR 78 (814)
T ss_dssp CSCEEEEEECS----SS-SEEEEEE--TTSEEEEEETTTTE-EEEEEECCSS---CEEEEEEEG---GGTEEEEEETTSE
T ss_pred CCceEEEEECC----CC-CEEEEEe--CCCEEEEEECCCCc-eEEEEecCCC---cEEEEEEeC---CCCEEEEEeCCCe
Confidence 35677776643 12 3444444 46888888643322 1222211122 234444332 2456776665555
Q ss_pred E-EEEeCC--ccccccCc------CCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCC
Q 044070 548 R-VLRVGL--NFTDVTDS------VGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEH 618 (903)
Q Consensus 548 ~-vl~~~~--~~~e~~~~------~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~ 618 (903)
. |+.+.. .+..+... ..|..+.+.|++|.- ...|++.+.... ...........
T Consensus 79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~vw~~~~~---------~~~~~~~~~~~ 140 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD---------DLTVKLWNWENN---------WALEQTFEGHE 140 (814)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET---------TSEEEEEEGGGT---------SEEEEEEECCS
T ss_pred EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcC---------CCEEEEEECCCC---------ceEEEEEcCCC
Confidence 4 555432 11111110 123333344443332 124556654332 01223333333
Q ss_pred eeEEEEEecC---CEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 619 VSISLGAVAH---NMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 619 ~~I~~As~~~---~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
..|.+++.+. ..++.+..++.+.++... .+ +............+.+++..+.++
T Consensus 141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~----~~--~~~~~~~~~~~~~v~~~~~~~~~~----------------- 197 (814)
T 3mkq_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLG----QS--TPNFTLTTGQERGVNYVDYYPLPD----------------- 197 (814)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETT----CS--SCSEEEECCCTTCCCEEEECCSTT-----------------
T ss_pred CcEEEEEEEcCCCCEEEEEeCCCeEEEEECC----CC--cceeEEecCCCCCEEEEEEEECCC-----------------
Confidence 4577766652 355555556666554321 11 111111222336677888765322
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEE
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLR 775 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~ 775 (903)
..++++|..|++|++|++...+.+..+.. .. ....++.+.. +..+|++|..||.+..
T Consensus 198 ---------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----------~~---~~v~~~~~~~-~~~~l~~~~~dg~v~v 254 (814)
T 3mkq_A 198 ---------KPYMITASDDLTIKIWDYQTKSCVATLEG----------HM---SNVSFAVFHP-TLPIIISGSEDGTLKI 254 (814)
T ss_dssp ---------CCEEEEECTTSEEEEEETTTTEEEEEEEC----------CS---SCEEEEEECS-SSSEEEEEETTSCEEE
T ss_pred ---------CCEEEEEeCCCEEEEEECCCCcEEEEEcC----------CC---CCEEEEEEcC-CCCEEEEEeCCCeEEE
Confidence 46899999999999999876443222210 00 0112333332 3568999999999998
Q ss_pred EEec
Q 044070 776 FEWP 779 (903)
Q Consensus 776 ~~~~ 779 (903)
|.+.
T Consensus 255 wd~~ 258 (814)
T 3mkq_A 255 WNSS 258 (814)
T ss_dssp EETT
T ss_pred EECC
Confidence 8765
No 46
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=92.06 E-value=3.6 Score=43.44 Aligned_cols=121 Identities=5% Similarity=0.021 Sum_probs=72.7
Q ss_pred CeeEEEEEec------CCEEEEEEeCCcEEEEEeEEeccccceEEEEe---eeccCCCceeEEEccCCCCcccCCCCCcc
Q 044070 618 HVSISLGAVA------HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEM---QHMRLQSELSCISIPQKHPERRKSSSPIS 688 (903)
Q Consensus 618 ~~~I~~As~~------~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~---~~~~l~~eiscl~i~~~~~g~~~~~~~~~ 688 (903)
...|.+.+.+ +..++.+..++.+.++... .+. .+... ........|.|+++.+...
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~----~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~---------- 82 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH----SQG-EIRLLQSYVDADADENFYTCAWTYDSN---------- 82 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC----GGG-CEEEEEEEECSCTTCCEEEEEEEECTT----------
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcC----CCc-EEEeeeeccccCCCCcEEEEEeccCCC----------
Confidence 3467777776 3456666666755544322 111 22222 2223557799999876321
Q ss_pred ccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEe
Q 044070 689 LVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGL 768 (903)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl 768 (903)
....++++|..|++|++|++...+.+..+.. .. ....++.+...+..+|+.|.
T Consensus 83 --------------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----------~~---~~i~~~~~~~~~~~~l~s~~ 135 (366)
T 3k26_A 83 --------------TSHPLLAVAGSRGIIRIINPITMQCIKHYVG----------HG---NAINELKFHPRDPNLLLSVS 135 (366)
T ss_dssp --------------TCCEEEEEEETTCEEEEECTTTCCEEEEEES----------CC---SCEEEEEECSSCTTEEEEEE
T ss_pred --------------CCCCEEEEecCCCEEEEEEchhceEeeeecC----------CC---CcEEEEEECCCCCCEEEEEe
Confidence 1146899999999999999876554322210 00 01245555443567899999
Q ss_pred cCCcEEEEEecC
Q 044070 769 RNGMLLRFEWPP 780 (903)
Q Consensus 769 ~~G~l~~~~~~~ 780 (903)
.||.+..|.+..
T Consensus 136 ~dg~i~iwd~~~ 147 (366)
T 3k26_A 136 KDHALRLWNIQT 147 (366)
T ss_dssp TTSCEEEEETTT
T ss_pred CCCeEEEEEeec
Confidence 999999998753
No 47
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=92.02 E-value=16 Score=39.61 Aligned_cols=117 Identities=12% Similarity=0.010 Sum_probs=63.5
Q ss_pred CeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEee-eccCCCceeEEEccCCCCcccCCCCCccccCCCC
Q 044070 618 HVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQ-HMRLQSELSCISIPQKHPERRKSSSPISLVSNSS 694 (903)
Q Consensus 618 ~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~-~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~ 694 (903)
...|.+.+.+ +.+++.+..++.+.++... .+ +..... ...-...+.++...+.
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~--~~~~~~~~~~~~~~~~~~~~~~~------------------ 231 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPR----KG--TVVAEKDRPHEGTRPVHAVFVSE------------------ 231 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETT----TT--EEEEEEECSSCSSSCCEEEECST------------------
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCC----CC--ceeeeeccCCCCCcceEEEEcCC------------------
Confidence 3457776665 4566666666666554321 22 222111 1222233677776542
Q ss_pred CCCCCCccccceEEEEE---ecCCeEEEEEccCCCC-eeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecC
Q 044070 695 VPALPAGVIIGYTFVIG---THRPSVEVLSFVPKEG-LRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRN 770 (903)
Q Consensus 695 ~~~~~~~~~~~~~l~vg---~~d~~v~i~sl~~~~~-l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~ 770 (903)
..++++| ..|+.|++|++...+. +... .+ +.. ....++.+..-+...+++|-.|
T Consensus 232 ----------~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~---~~------~~~---~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 232 ----------GKILTTGFSRMSERQVALWDTKHLEEPLSLQ---EL------DTS---SGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp ----------TEEEEEEECTTCCEEEEEEETTBCSSCSEEE---EC------CCC---SSCEEEEEETTTTEEEEEETTC
T ss_pred ----------CcEEEEeccCCCCceEEEEcCccccCCceEE---ec------cCC---CceeEEEEcCCCCEEEEEEcCC
Confidence 4688888 5799999999876543 1111 11 110 0113443333333333567789
Q ss_pred CcEEEEEecC
Q 044070 771 GMLLRFEWPP 780 (903)
Q Consensus 771 G~l~~~~~~~ 780 (903)
|.+..|++..
T Consensus 290 g~i~i~d~~~ 299 (402)
T 2aq5_A 290 SSIRYFEITS 299 (402)
T ss_dssp SCEEEEEECS
T ss_pred CeEEEEEecC
Confidence 9999999874
No 48
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=91.81 E-value=5.7 Score=42.73 Aligned_cols=122 Identities=8% Similarity=0.074 Sum_probs=68.4
Q ss_pred eeeEecCCeeEEEEEec----CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCC
Q 044070 611 CTSWFPEHVSISLGAVA----HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSP 686 (903)
Q Consensus 611 ~~~w~~~~~~I~~As~~----~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~ 686 (903)
...+......|.+.+.. +..++.+..++.+.++... .+ +.... -......|.|+++.+.
T Consensus 189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~----~~--~~~~~-~~~h~~~v~~v~~~p~---------- 251 (354)
T 2pbi_B 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR----SG--QCVQA-FETHESDVNSVRYYPS---------- 251 (354)
T ss_dssp EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT----TC--CEEEE-ECCCSSCEEEEEECTT----------
T ss_pred EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC----CC--cEEEE-ecCCCCCeEEEEEeCC----------
Confidence 34444322345554443 2456666666776655322 22 22211 1234577899988662
Q ss_pred ccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEE
Q 044070 687 ISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLA 766 (903)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~v 766 (903)
..+++.|.+|++|++|.+.....+..... ... ..-..++.+. .+..+|++
T Consensus 252 ------------------~~~l~s~s~D~~v~lwd~~~~~~~~~~~~---------~~~--~~~~~~~~~s-~~g~~l~~ 301 (354)
T 2pbi_B 252 ------------------GDAFASGSDDATCRLYDLRADREVAIYSK---------ESI--IFGASSVDFS-LSGRLLFA 301 (354)
T ss_dssp ------------------SSEEEEEETTSCEEEEETTTTEEEEEECC---------TTC--CSCEEEEEEC-TTSSEEEE
T ss_pred ------------------CCEEEEEeCCCeEEEEECCCCcEEEEEcC---------CCc--ccceeEEEEe-CCCCEEEE
Confidence 45899999999999999875432211110 000 0011233222 24678999
Q ss_pred EecCCcEEEEEec
Q 044070 767 GLRNGMLLRFEWP 779 (903)
Q Consensus 767 gl~~G~l~~~~~~ 779 (903)
|..||.+..|.+.
T Consensus 302 g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 302 GYNDYTINVWDVL 314 (354)
T ss_dssp EETTSCEEEEETT
T ss_pred EECCCcEEEEECC
Confidence 9999999998864
No 49
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=91.77 E-value=4.3 Score=42.76 Aligned_cols=112 Identities=5% Similarity=-0.034 Sum_probs=69.1
Q ss_pred CeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 618 HVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 618 ~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
...|.+.+.. +.+++.+..++.+.++... .+ +... .......|.|+++.+.++
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~----~~--~~~~--~~~~~~~v~~~~~~~~~~----------------- 140 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLS----SN--QAIQ--IAQHDAPVKTIHWIKAPN----------------- 140 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETT----TT--EEEE--EEECSSCEEEEEEEECSS-----------------
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcC----CC--Ccee--eccccCceEEEEEEeCCC-----------------
Confidence 3457666665 4466666666766654322 22 2222 344678899998843211
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEE
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLR 775 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~ 775 (903)
..++++|..|++|++|++...+.+..+.. +..+.........++++..+|.+..
T Consensus 141 ---------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (368)
T 3mmy_A 141 ---------YSCVMTGSWDKTLKFWDTRSSNPMMVLQL-----------------PERCYCADVIYPMAVVATAERGLIV 194 (368)
T ss_dssp ---------CEEEEEEETTSEEEEECSSCSSCSEEEEC-----------------SSCEEEEEEETTEEEEEEGGGCEEE
T ss_pred ---------CCEEEEccCCCcEEEEECCCCcEEEEEec-----------------CCCceEEEecCCeeEEEeCCCcEEE
Confidence 46899999999999999876654432210 1111111222567899999999999
Q ss_pred EEecC
Q 044070 776 FEWPP 780 (903)
Q Consensus 776 ~~~~~ 780 (903)
|.++.
T Consensus 195 ~~~~~ 199 (368)
T 3mmy_A 195 YQLEN 199 (368)
T ss_dssp EECSS
T ss_pred EEecc
Confidence 98864
No 50
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=91.76 E-value=15 Score=38.89 Aligned_cols=246 Identities=12% Similarity=0.094 Sum_probs=116.8
Q ss_pred eeecc-cccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEE
Q 044070 463 SPIQN-IAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVL 541 (903)
Q Consensus 463 ~~l~N-~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~Lvl 541 (903)
.++.. .++|..++... + .++++++| .+|.+++..-.- .+.+..+. ..-..++.+.... ...+|+.
T Consensus 49 ~~l~gH~~~v~~~~~s~----d-~~~l~s~s--~Dg~v~iWd~~~-~~~~~~~~---~~~~~v~~~~~s~---~~~~l~s 114 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGT----D-SRLLLSAS--QDGKLIIWDSYT-TNKVHAIP---LRSSWVMTCAYAP---SGNYVAC 114 (340)
T ss_dssp EEECCCSSCEEEEEECT----T-SSEEEEEE--TTTEEEEEETTT-CCEEEEEE---CSSSCEEEEEECT---TSSEEEE
T ss_pred eeecCCCCceEEEEECC----C-CCEEEEEe--CCCcEEEEECCC-CCcceEee---cCCccEEEEEECC---CCCEEEE
Confidence 34433 57888877643 1 23444433 578888875321 11222221 1122345555432 2457776
Q ss_pred EecCce-EEEEeCCccccccCcCCccCCCCeEEEEee-CCCeEEEEE-cCcEEEEccCcccccCCCCCCCCeeeeEecCC
Q 044070 542 SFVEET-RVLRVGLNFTDVTDSVGFRPDVCTLACGLV-ADGLLVQIH-QNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEH 618 (903)
Q Consensus 542 S~~~~T-~vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~-~~~~ivQVT-~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~ 618 (903)
+..+.+ .++.+...-........+......+.+..+ .++.++=.. ...|++.+.... .....+....
T Consensus 115 ~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~----------~~~~~~~~h~ 184 (340)
T 1got_B 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG----------QQTTTFTGHT 184 (340)
T ss_dssp EETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT----------EEEEEECCCS
T ss_pred EeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC----------cEEEEEcCCC
Confidence 655554 466553210000000001111112222222 223322222 234566654432 1233333322
Q ss_pred eeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCC
Q 044070 619 VSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVP 696 (903)
Q Consensus 619 ~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~ 696 (903)
..|.+.+.. +.+++.+..++.+.+.... .+ +... .-......|.|+++.+.
T Consensus 185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~----~~--~~~~-~~~~h~~~v~~v~~~p~-------------------- 237 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVR----EG--MCRQ-TFTGHESDINAICFFPN-------------------- 237 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT----TC--SEEE-EECCCSSCEEEEEECTT--------------------
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECC----CC--eeEE-EEcCCcCCEEEEEEcCC--------------------
Confidence 346666655 3345555556666554221 22 1211 11234567899988762
Q ss_pred CCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEE
Q 044070 697 ALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRF 776 (903)
Q Consensus 697 ~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~ 776 (903)
..+++.|..|++|++|.+...+.+.... .. .. ..-..++.+.. +..+|++|..||.+..|
T Consensus 238 --------~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~----~~--~~~v~~~~~s~-~g~~l~~g~~d~~i~vw 297 (340)
T 1got_B 238 --------GNAFATGSDDATCRLFDLRADQELMTYS-----HD----NI--ICGITSVSFSK-SGRLLLAGYDDFNCNVW 297 (340)
T ss_dssp --------SSEEEEEETTSCEEEEETTTTEEEEEEC-----CT----TC--CSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred --------CCEEEEEcCCCcEEEEECCCCcEEEEEc-----cC----Cc--ccceEEEEECC-CCCEEEEECCCCeEEEE
Confidence 4689999999999999987644322111 00 00 00012333222 46789999999999988
Q ss_pred Eec
Q 044070 777 EWP 779 (903)
Q Consensus 777 ~~~ 779 (903)
.+.
T Consensus 298 d~~ 300 (340)
T 1got_B 298 DAL 300 (340)
T ss_dssp ETT
T ss_pred Ecc
Confidence 764
No 51
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=91.72 E-value=15 Score=38.86 Aligned_cols=132 Identities=13% Similarity=0.110 Sum_probs=73.5
Q ss_pred CcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCC
Q 044070 588 NAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQ 665 (903)
Q Consensus 588 ~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~ 665 (903)
..|++.+.... .....+......|.+.+.. +.+++.+..++.+.++... .+ ..+.........
T Consensus 206 ~~v~~wd~~~~----------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~----~~-~~~~~~~~~~~~ 270 (340)
T 1got_B 206 ASAKLWDVREG----------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR----AD-QELMTYSHDNII 270 (340)
T ss_dssp SCEEEEETTTC----------SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TT-EEEEEECCTTCC
T ss_pred CcEEEEECCCC----------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC----CC-cEEEEEccCCcc
Confidence 45666665432 2344444333457666665 4566666667776655322 22 122222222233
Q ss_pred CceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCC
Q 044070 666 SELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTA 745 (903)
Q Consensus 666 ~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~ 745 (903)
..|.++++.+. ..++++|..|++|++|.+...+.+..+. +..
T Consensus 271 ~~v~~~~~s~~----------------------------g~~l~~g~~d~~i~vwd~~~~~~~~~~~----------~h~ 312 (340)
T 1got_B 271 CGITSVSFSKS----------------------------GRLLLAGYDDFNCNVWDALKADRAGVLA----------GHD 312 (340)
T ss_dssp SCEEEEEECTT----------------------------SSEEEEEETTSEEEEEETTTCCEEEEEE----------CCS
T ss_pred cceEEEEECCC----------------------------CCEEEEECCCCeEEEEEcccCcEeeEee----------cCC
Confidence 46888888662 4689999999999999987655332221 010
Q ss_pred CCCCCcceeEEeecCccEEEEEecCCcEEEE
Q 044070 746 ISGCIPQDVRLVLADQFYVLAGLRNGMLLRF 776 (903)
Q Consensus 746 ~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~ 776 (903)
+ ...++.+.. +..+|..|-.||.+..|
T Consensus 313 -~--~v~~~~~s~-dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 313 -N--RVSCLGVTD-DGMAVATGSWDSFLKIW 339 (340)
T ss_dssp -S--CEEEEEECT-TSSCEEEEETTSCEEEE
T ss_pred -C--cEEEEEEcC-CCCEEEEEcCCccEEec
Confidence 0 112333321 35678888899988665
No 52
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=91.59 E-value=17 Score=43.55 Aligned_cols=119 Identities=8% Similarity=0.059 Sum_probs=71.6
Q ss_pred eeEEEEEec----CCEEEEEEeCCcEEEEEeEEeccccceEEEEe-eeccCCCceeEEEccCCCCcccCCCCCccccCCC
Q 044070 619 VSISLGAVA----HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEM-QHMRLQSELSCISIPQKHPERRKSSSPISLVSNS 693 (903)
Q Consensus 619 ~~I~~As~~----~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~-~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~ 693 (903)
..|.+.+.. +++++.+..+|.+.++... .+ +.... ........|.|+++.+...
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~----~~--~~~~~~~~~~h~~~V~~v~~sp~~~--------------- 112 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEE----NG--RWSQIAVHAVHSASVNSVQWAPHEY--------------- 112 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEE----TT--EEEEEEEECCCSSCEEEEEECCGGG---------------
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECC----CC--cccccccccCCCCCeEEEEECCCCC---------------
Confidence 457776664 4566666667777665332 22 22222 2234567899999876310
Q ss_pred CCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec------------Cc
Q 044070 694 SVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA------------DQ 761 (903)
Q Consensus 694 ~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~------------~~ 761 (903)
..++++|+.|++|++|.+............. .. ....++.+... +.
T Consensus 113 -----------~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~--------~~---~~v~~l~~~p~~~~~~~~~~~~~d~ 170 (753)
T 3jro_A 113 -----------GPLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HA---IGVNSASWAPATIEEDGEHNGTKES 170 (753)
T ss_dssp -----------CSEEEEEETTSEEEEEECCSSSCCCCEEEEC--------CS---SCEEEEEECCCC---------CGGG
T ss_pred -----------CCEEEEEeCCCcEEEEEeecCCCcceeEeec--------CC---CceEEEEecCcccccccccccCCCC
Confidence 3588999999999999997653221111100 00 01134433332 35
Q ss_pred cEEEEEecCCcEEEEEecC
Q 044070 762 FYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 762 ~~L~vgl~~G~l~~~~~~~ 780 (903)
.+|++|..||.+..|.+..
T Consensus 171 ~~l~sgs~dg~I~iwd~~~ 189 (753)
T 3jro_A 171 RKFVTGGADNLVKIWKYNS 189 (753)
T ss_dssp CCEEEEETTSCEEEEEEET
T ss_pred CEEEEEECCCeEEEEeccC
Confidence 6799999999999998864
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=91.23 E-value=20 Score=39.33 Aligned_cols=259 Identities=10% Similarity=0.070 Sum_probs=132.1
Q ss_pred ECCCeEEEEEeeCCeEEEEEeCCceEEeeeec-ccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEee
Q 044070 435 VEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQ-NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLR 513 (903)
Q Consensus 435 l~~~~lFvgS~~gds~L~~~~~~~~~~~~~l~-N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~ 513 (903)
.++++|+.|+.-|.=.+|.+... +.+..+. .-++|..+... +.+++++| .+|.+++..-.-+ +.+..
T Consensus 127 ~~g~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~-------~~~l~s~~--~dg~i~vwd~~~~-~~~~~ 194 (445)
T 2ovr_B 127 FCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMR-------DNIIISGS--TDRTLKVWNAETG-ECIHT 194 (445)
T ss_dssp EETTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEE-------TTEEEEEE--TTSCEEEEETTTT-EEEEE
T ss_pred EcCCEEEEEECCCcEEEEECCCC--cEEEEEcCCCCCEEEEEec-------CCEEEEEe--CCCeEEEEECCcC-cEEEE
Confidence 35778888887665555554332 3334443 44677666653 12344433 4678887764322 22222
Q ss_pred cCCCCCCccEEEEeeecCCCCcceEEEEEecCceE-EEEeCCc--cccccCcCCccCCCCeEEEEeeCCCeEEEEE-cCc
Q 044070 514 TAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETR-VLRVGLN--FTDVTDSVGFRPDVCTLACGLVADGLLVQIH-QNA 589 (903)
Q Consensus 514 ~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~-vl~~~~~--~~e~~~~~~f~~~~~Tl~a~~~~~~~ivQVT-~~~ 589 (903)
+. ..-..+..+... ..+++....+.+. ++.+... +..+.. ....+.+-.+.+..++=.+ ...
T Consensus 195 ~~---~h~~~v~~~~~~-----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------~~~~v~~~~~~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 195 LY---GHTSTVRCMHLH-----EKRVVSGSRDATLRVWDIETGQCLHVLMG------HVAAVRCVQYDGRRVVSGAYDFM 260 (445)
T ss_dssp EC---CCSSCEEEEEEE-----TTEEEEEETTSEEEEEESSSCCEEEEEEC------CSSCEEEEEECSSCEEEEETTSC
T ss_pred EC---CCCCcEEEEEec-----CCEEEEEeCCCEEEEEECCCCcEEEEEcC------CcccEEEEEECCCEEEEEcCCCE
Confidence 32 112234444432 2355555555553 5544321 111111 1112222222222222222 234
Q ss_pred EEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCcee
Q 044070 590 VRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELS 669 (903)
Q Consensus 590 irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eis 669 (903)
|++.+.... .....+......|.+.+..+.+++.+..++.+..+... ++ +.... -......+.
T Consensus 261 i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~----~~--~~~~~-~~~~~~~v~ 323 (445)
T 2ovr_B 261 VKVWDPETE----------TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE----TG--NCIHT-LTGHQSLTS 323 (445)
T ss_dssp EEEEEGGGT----------EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETT----TC--CEEEE-ECCCCSCEE
T ss_pred EEEEECCCC----------cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECC----CC--CEEEE-EcCCcccEE
Confidence 666665432 23344433334677777778888888778877665322 22 22211 112244566
Q ss_pred EEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCC
Q 044070 670 CISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGC 749 (903)
Q Consensus 670 cl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~ 749 (903)
+++.. ..++++|..|++|++|++...+.+..+.. . ..
T Consensus 324 ~~~~~------------------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~-~~----- 360 (445)
T 2ovr_B 324 GMELK------------------------------DNILVSGNADSTVKIWDIKTGQCLQTLQG-------P-NK----- 360 (445)
T ss_dssp EEEEE------------------------------TTEEEEEETTSCEEEEETTTCCEEEEECS-------T-TS-----
T ss_pred EEEEe------------------------------CCEEEEEeCCCeEEEEECCCCcEEEEEcc-------C-CC-----
Confidence 66542 34889999999999999976554322210 0 00
Q ss_pred CcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 750 IPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 750 ~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
....+.-+.....+|+.|..||.+..|.+.
T Consensus 361 ~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 361 HQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp CSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 111222223346789999999999999875
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=91.15 E-value=17 Score=38.29 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=70.5
Q ss_pred eeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEE-eeeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 619 VSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYE-MQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 619 ~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~-~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
..|.+.+.. +.+++.+..++.+.++... .+ ++.. .........|.|+++.+.
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~--~~~~~~~~~~~~~~v~~~~~~~~------------------- 107 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLK----GR--TWKPTLVILRINRAARCVRWAPN------------------- 107 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEE----TT--EEEEEEECCCCSSCEEEEEECTT-------------------
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECC----CC--eeeeeEEeecCCCceeEEEECCC-------------------
Confidence 346665554 4566666666776655332 22 2222 223445778999988752
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEE
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLR 775 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~ 775 (903)
..++++|..|+.|++|.+...+....... +. . +.. ....++.+.. +..+|++|..||.+..
T Consensus 108 ---------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~-~---~~~---~~i~~~~~~~-~~~~l~~~~~dg~i~~ 168 (372)
T 1k8k_C 108 ---------EKKFAVGSGSRVISICYFEQENDWWVCKH--IK-K---PIR---STVLSLDWHP-NSVLLAAGSCDFKCRI 168 (372)
T ss_dssp ---------SSEEEEEETTSSEEEEEEETTTTEEEEEE--EC-T---TCC---SCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred ---------CCEEEEEeCCCEEEEEEecCCCcceeeee--ee-c---ccC---CCeeEEEEcC-CCCEEEEEcCCCCEEE
Confidence 45899999999999999987553222111 10 0 000 0113443332 4568999999999999
Q ss_pred EEec
Q 044070 776 FEWP 779 (903)
Q Consensus 776 ~~~~ 779 (903)
|.+.
T Consensus 169 ~d~~ 172 (372)
T 1k8k_C 169 FSAY 172 (372)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9874
No 55
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.14 E-value=16 Score=38.14 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=39.6
Q ss_pred eEEEEEecCCeEEEEEccCCCC-eeEE--------EeeeeeecccCCCCCCCCCcceeEEeec-CccEEEEEecCCcEEE
Q 044070 706 YTFVIGTHRPSVEVLSFVPKEG-LRVL--------ASGSIVLTNTMGTAISGCIPQDVRLVLA-DQFYVLAGLRNGMLLR 775 (903)
Q Consensus 706 ~~l~vg~~d~~v~i~sl~~~~~-l~~~--------s~~~l~~~~~~~~~~s~~~p~si~l~~~-~~~~L~vgl~~G~l~~ 775 (903)
.++++|..|+.|++|++...+. +... ....+. .... ...++.+..- ...+|.+|..||.+..
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~v 313 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD------YSQC--DIWYMRFSMDFWQKMLALGNQVGKLYV 313 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE------CSSC--CSSCCCCEECTTSSEEEEECTTSCEEE
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc------ccCC--cEEEEEEcCCCCCcEEEEEecCCcEEE
Confidence 4888999999999999876432 1000 000000 0000 1123333322 1678999999999999
Q ss_pred EEecC
Q 044070 776 FEWPP 780 (903)
Q Consensus 776 ~~~~~ 780 (903)
|.+..
T Consensus 314 wd~~~ 318 (366)
T 3k26_A 314 WDLEV 318 (366)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 98764
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=91.07 E-value=18 Score=38.57 Aligned_cols=89 Identities=6% Similarity=-0.035 Sum_probs=51.1
Q ss_pred eeeEecCCeeEEEEEecC--C-EEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCc
Q 044070 611 CTSWFPEHVSISLGAVAH--N-MIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPI 687 (903)
Q Consensus 611 ~~~w~~~~~~I~~As~~~--~-~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~ 687 (903)
...+......|.+.+.+. + .++.+..++.+.++........+ ++. ........|.|+++.+..
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~--~~~~~~~~v~~~~~s~~~---------- 262 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN--SYI--AEMPHEKPVNAAYFNPTD---------- 262 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT--CEE--EEEECSSCEEEEEECTTT----------
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc--ceE--EEecCCCceEEEEEcCCC----------
Confidence 344443334577766663 3 44555555655554322100001 222 223467889999886511
Q ss_pred cccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeE
Q 044070 688 SLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRV 730 (903)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~ 730 (903)
..++++|..|++|++|++...+.+..
T Consensus 263 -----------------~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 263 -----------------STKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp -----------------SCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred -----------------CCEEEEEcCCCcEEEEECCCCccccc
Confidence 46889999999999999987665433
No 57
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=90.93 E-value=17 Score=37.85 Aligned_cols=121 Identities=8% Similarity=0.049 Sum_probs=67.1
Q ss_pred eeEEEEEec-CCEEEEEEeCCcEEEEEeEEeccccceE--EEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 619 VSISLGAVA-HNMIIVSTSNPCFLFILGVRSLSVSHYE--IYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 619 ~~I~~As~~-~~~vvva~~~~~il~~~~~~~~~~g~~~--L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
..|.+.+.. +.+++.+..++.+.++..... ..+... ............|.|+++.+
T Consensus 102 ~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------------- 160 (342)
T 1yfq_A 102 LGICRICKYGDDKLIAASWDGLIEVIDPRNY-GDGVIAVKNLNSNNTKVKNKIFTMDTNS-------------------- 160 (342)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEECHHHH-TTBCEEEEESCSSSSSSCCCEEEEEECS--------------------
T ss_pred CceEEEEeCCCCEEEEEcCCCeEEEEccccc-ccccccccCCeeeEEeeCCceEEEEecC--------------------
Confidence 346555554 566666666666554421100 000000 11123344677888888754
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccC-CCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEE
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVP-KEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLL 774 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~-~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~ 774 (903)
.. +++|+.|+.|++|++.. .......... . .. ....++.+...+..+|++|..+|.+.
T Consensus 161 ---------~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~----~~-----~~i~~i~~~~~~~~~l~~~~~dg~i~ 219 (342)
T 1yfq_A 161 ---------SR-LIVGMNNSQVQWFRLPLCEDDNGTIEES--G----LK-----YQIRDVALLPKEQEGYACSSIDGRVA 219 (342)
T ss_dssp ---------SE-EEEEESTTEEEEEESSCCTTCCCEEEEC--S----CS-----SCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred ---------Cc-EEEEeCCCeEEEEECCccccccceeeec--C----CC-----CceeEEEECCCCCCEEEEEecCCcEE
Confidence 22 88899999999999976 4321111100 0 00 12245555431356899999999999
Q ss_pred EEEecCC
Q 044070 775 RFEWPPD 781 (903)
Q Consensus 775 ~~~~~~~ 781 (903)
.|.++..
T Consensus 220 i~~~~~~ 226 (342)
T 1yfq_A 220 VEFFDDQ 226 (342)
T ss_dssp EEECCTT
T ss_pred EEEEcCC
Confidence 9888754
No 58
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=90.91 E-value=17 Score=37.82 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=69.1
Q ss_pred eeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCcc
Q 044070 611 CTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPIS 688 (903)
Q Consensus 611 ~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~ 688 (903)
...+......|.+.+.. +++++.+..++.+.+.... .+ ..+.. .-......|.|+++.+..
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~----~~-~~~~~-~~~~h~~~v~~v~~~p~~----------- 152 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NN-WALEQ-TFEGHEHFVMCVAFNPKD----------- 152 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGG----GT-TEEEE-EECCCCSCEEEEEECTTC-----------
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECC----CC-cchhh-hhcccCCcEEEEEECCCC-----------
Confidence 33444322345555554 3455555556666655322 11 12221 112345678999986521
Q ss_pred ccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec-CccEEEEE
Q 044070 689 LVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA-DQFYVLAG 767 (903)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~-~~~~L~vg 767 (903)
..+++.|..|++|++|++........+.. +.. . ....+.+... +..+|+.|
T Consensus 153 ----------------~~~l~sgs~D~~v~iwd~~~~~~~~~~~~---------~~~--~-~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 153 ----------------PSTFASGCLDRTVKVWSLGQSTPNFTLTT---------GQE--R-GVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp ----------------TTEEEEEETTSEEEEEETTCSSCSEEEEC---------CCT--T-CEEEEEECCSTTCCEEEEE
T ss_pred ----------------CCEEEEEeCCCeEEEEECCCCCccceecc---------CCc--C-cEEEEEEEEcCCCCEEEEE
Confidence 35889999999999999865443211110 000 0 0123333333 35789999
Q ss_pred ecCCcEEEEEec
Q 044070 768 LRNGMLLRFEWP 779 (903)
Q Consensus 768 l~~G~l~~~~~~ 779 (903)
-.||.+..|.+.
T Consensus 205 s~D~~i~iWd~~ 216 (304)
T 2ynn_A 205 SDDLTIKIWDYQ 216 (304)
T ss_dssp ETTSEEEEEETT
T ss_pred cCCCeEEEEeCC
Confidence 999999888765
No 59
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=90.35 E-value=22 Score=42.73 Aligned_cols=115 Identities=2% Similarity=-0.167 Sum_probs=64.1
Q ss_pred CCEEEEEEeCCcEEEEEeEEeccccceEEEEee-eccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccce
Q 044070 628 HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQ-HMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGY 706 (903)
Q Consensus 628 ~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~-~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (903)
+.+++.+..+|.+.++... .+........ .......|.|+++.+... ...
T Consensus 170 ~~~l~sgs~dg~I~iwd~~----~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-------------------------~~~ 220 (753)
T 3jro_A 170 SRKFVTGGADNLVKIWKYN----SDAQTYVLESTLEGHSDWVRDVAWSPTVL-------------------------LRS 220 (753)
T ss_dssp GCCEEEEETTSCEEEEEEE----TTTTEEEEEEEECCCSSCEEEEEECCCCS-------------------------SSE
T ss_pred CCEEEEEECCCeEEEEecc----CCcccceeeeeecCCCCcEEEEEeccCCC-------------------------CCC
Confidence 4566776667776655332 1111111111 223467789999876310 036
Q ss_pred EEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 707 TFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 707 ~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
+++.|..|++|++|++...+...... ... ..+. . ....++.+.. +..+|+.|-.||.+..|.++.
T Consensus 221 ~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~---~~~~--~-~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 221 YLASVSQDRTCIIWTQDNEQGPWKKT--LLK---EEKF--P-DVLWRASWSL-SGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEESSSCEEEEEESSSSSCCBCC--BSS---SSCC--S-SCCCCEEECT-TTCCEEEECSSSCEECCBCCS
T ss_pred EEEEEecCCEEEEecCCCCCCcceeE--Eec---cCCC--C-CceEEEEEcC-CCCEEEEEcCCCEEEEEecCC
Confidence 89999999999999987643210000 000 0000 0 0123444433 356789999999999998763
No 60
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=90.23 E-value=8.1 Score=41.46 Aligned_cols=115 Identities=7% Similarity=-0.017 Sum_probs=68.1
Q ss_pred CeeEEEEEecC---CEEEEEEeCCcEEEEEeEEeccccceEEEEe-eeccCCCceeEEEccCCCCcccCCCCCccccCCC
Q 044070 618 HVSISLGAVAH---NMIIVSTSNPCFLFILGVRSLSVSHYEIYEM-QHMRLQSELSCISIPQKHPERRKSSSPISLVSNS 693 (903)
Q Consensus 618 ~~~I~~As~~~---~~vvva~~~~~il~~~~~~~~~~g~~~L~~~-~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~ 693 (903)
...|.+.+... .+++.+..++.+.++... + ..+... ........|.|+++.+.
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----~-~~~~~~~~~~~~~~~v~~~~~~~~----------------- 174 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFS-----G-SVIQVFAKTDSWDYWYCCVDVSVS----------------- 174 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETT-----S-CEEEEEECCCCSSCCEEEEEEETT-----------------
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECC-----C-CceEEEeccCCCCCCeEEEEECCC-----------------
Confidence 34577777653 345555555665544221 1 123222 22233467899988762
Q ss_pred CCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcE
Q 044070 694 SVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGML 773 (903)
Q Consensus 694 ~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l 773 (903)
..++++|..|++|++|++.. +.+..+.. .. ....++.+..-+..+|+.|-.||.+
T Consensus 175 -----------~~~l~~~~~d~~i~i~d~~~-~~~~~~~~----------h~---~~v~~~~~~~~~~~~l~s~~~d~~i 229 (383)
T 3ei3_B 175 -----------RQMLATGDSTGRLLLLGLDG-HEIFKEKL----------HK---AKVTHAEFNPRCDWLMATSSVDATV 229 (383)
T ss_dssp -----------TTEEEEEETTSEEEEEETTS-CEEEEEEC----------SS---SCEEEEEECSSCTTEEEEEETTSEE
T ss_pred -----------CCEEEEECCCCCEEEEECCC-CEEEEecc----------CC---CcEEEEEECCCCCCEEEEEeCCCEE
Confidence 45899999999999999842 32222110 00 0124555544445589999999999
Q ss_pred EEEEecC
Q 044070 774 LRFEWPP 780 (903)
Q Consensus 774 ~~~~~~~ 780 (903)
..|.+..
T Consensus 230 ~iwd~~~ 236 (383)
T 3ei3_B 230 KLWDLRN 236 (383)
T ss_dssp EEEEGGG
T ss_pred EEEeCCC
Confidence 9998864
No 61
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=90.10 E-value=25 Score=38.57 Aligned_cols=262 Identities=5% Similarity=0.008 Sum_probs=125.3
Q ss_pred ceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCc---------eeEEeecCCCCCCccEEEEee
Q 044070 458 RLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGIS---------LEKLLRTAPIYQGITGTWTVR 528 (903)
Q Consensus 458 ~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~---------~~~~~~~~~~~~~v~~iWtl~ 528 (903)
.+.....+..-++|..++.... ...++++++ .+|.+++..-.-. ...+..+...-. .++.+.
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~----~~~~lat~~--~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~ 188 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQ----NACVIATKT--PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK---EGYGLS 188 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETT----EEEEEEEEC--SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS---CCCCEE
T ss_pred ceEEEEEEcCCCcEEEEEECCC----CCcEEEEEC--CCCcEEEEECCCcccccCccccCCCcEEecCCCC---CeEEEE
Confidence 4555667777889999887641 134555443 4678888875321 111111110111 223333
Q ss_pred ecCCCCcceEEEEEecCceE-EEEeCCc--ccc-ccCcCCccCCCCeEEEEeeC---CCeEEEEE-cCcEEEEccCcccc
Q 044070 529 MKVSDPYHSFLVLSFVEETR-VLRVGLN--FTD-VTDSVGFRPDVCTLACGLVA---DGLLVQIH-QNAVRLCMPTMVAH 600 (903)
Q Consensus 529 ~~~~~~~~~~LvlS~~~~T~-vl~~~~~--~~e-~~~~~~f~~~~~Tl~a~~~~---~~~ivQVT-~~~irl~~~~~~~~ 600 (903)
.... ...+|+.+..+.+. ++.+... ... +.....+......+.+-.+. +..++=.. ...|++++......
T Consensus 189 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 189 WNPN--LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp ECTT--STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred eCCC--CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 3211 12266666665554 6665431 000 00000111111222222221 12233333 34466666543200
Q ss_pred cCCCCCCCCeeeeEecCCeeEEEEEec--CCE-EEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCC
Q 044070 601 SGGIPLSYPVCTSWFPEHVSISLGAVA--HNM-IIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKH 677 (903)
Q Consensus 601 ~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~-vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~ 677 (903)
.............|.+.+.+ +.+ ++.+..++.+.++... .....+... ......|.++++.+..
T Consensus 267 -------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~----~~~~~~~~~--~~h~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 267 -------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR----NLKLKLHSF--ESHKDEIFQVQWSPHN 333 (430)
T ss_dssp -------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT----CTTSCSEEE--ECCSSCEEEEEECSSC
T ss_pred -------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC----CCCCCeEEe--ecCCCCEEEEEECCCC
Confidence 01233333333457777776 333 4444555665554321 111112111 1246788999887631
Q ss_pred CcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCe-----------eEEEeeeeeecccCCCCC
Q 044070 678 PERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGL-----------RVLASGSIVLTNTMGTAI 746 (903)
Q Consensus 678 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l-----------~~~s~~~l~~~~~~~~~~ 746 (903)
..++++|..|++|.||.+...... +.+.. ..+..
T Consensus 334 ---------------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--------~~~h~ 378 (430)
T 2xyi_A 334 ---------------------------ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI--------HGGHT 378 (430)
T ss_dssp ---------------------------TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE--------CCCCS
T ss_pred ---------------------------CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE--------cCCCC
Confidence 358889999999999999763210 00100 00100
Q ss_pred CCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 747 SGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 747 s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
..+.++.+..-+..+|..+-.||.+..|+++.
T Consensus 379 --~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 379 --AKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp --SCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred --CCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 12345555444444788888999999999863
No 62
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=90.06 E-value=24 Score=38.16 Aligned_cols=116 Identities=8% Similarity=0.005 Sum_probs=66.8
Q ss_pred eeEEEEEecC---CEEEEEEeCCcEEEEEeEEeccccceEEEEeee-ccCCCceeEEEccCCCCcccCCCCCccccCCCC
Q 044070 619 VSISLGAVAH---NMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQH-MRLQSELSCISIPQKHPERRKSSSPISLVSNSS 694 (903)
Q Consensus 619 ~~I~~As~~~---~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~-~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~ 694 (903)
..|.+.+... ..++.+..++.+.++... .+ +...... ......|.|+++.+.
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~----~~--~~~~~~~~~~~~~~v~~~~~~~~------------------ 187 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVG----TG--AAVLTLGPDVHPDTIYSVDWSRD------------------ 187 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEETT----TT--EEEEEECTTTCCSCEEEEEECTT------------------
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEECC----CC--CccEEEecCCCCCceEEEEECCC------------------
Confidence 4566666652 244555556666554322 22 2222111 345678999998762
Q ss_pred CCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEE---ecCC
Q 044070 695 VPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAG---LRNG 771 (903)
Q Consensus 695 ~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vg---l~~G 771 (903)
..++++|+.|++|++|++...+.+..+. . +.. + ..+..+.+.. +..+|.+| ..||
T Consensus 188 ----------~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~-----~~~-~-~~~~~~~~~~-~~~~l~~g~~~~~d~ 245 (402)
T 2aq5_A 188 ----------GALICTSCRDKRVRVIEPRKGTVVAEKD----R-----PHE-G-TRPVHAVFVS-EGKILTTGFSRMSER 245 (402)
T ss_dssp ----------SSCEEEEETTSEEEEEETTTTEEEEEEE----C-----SSC-S-SSCCEEEECS-TTEEEEEEECTTCCE
T ss_pred ----------CCEEEEEecCCcEEEEeCCCCceeeeec----c-----CCC-C-CcceEEEEcC-CCcEEEEeccCCCCc
Confidence 4588899999999999987644322110 0 000 0 1123444432 35678888 6899
Q ss_pred cEEEEEecC
Q 044070 772 MLLRFEWPP 780 (903)
Q Consensus 772 ~l~~~~~~~ 780 (903)
.+..|.+..
T Consensus 246 ~i~iwd~~~ 254 (402)
T 2aq5_A 246 QVALWDTKH 254 (402)
T ss_dssp EEEEEETTB
T ss_pred eEEEEcCcc
Confidence 998888753
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=89.64 E-value=20 Score=36.61 Aligned_cols=237 Identities=7% Similarity=0.044 Sum_probs=116.9
Q ss_pred Eeeeecc-cccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEE
Q 044070 461 YTSPIQN-IAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFL 539 (903)
Q Consensus 461 ~~~~l~N-~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~L 539 (903)
....+.. -++|..++. .. ...|++++ .+|.+++..-.=.. ....+. ..-..++.+.... ...+|
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~----~~~l~s~~---~dg~v~vw~~~~~~-~~~~~~---~~~~~v~~~~~~~---~~~~l 74 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VD----DSKVASVS---RDGTVRLWSKDDQW-LGTVVY---TGQGFLNSVCYDS---EKELL 74 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EE----TTEEEEEE---TTSEEEEEEESSSE-EEEEEE---ECSSCEEEEEEET---TTTEE
T ss_pred HHHHhhCCCCCcEEEEe-cC----CCEEEEEE---cCCcEEEEECCCCE-EEEEee---cCCccEEEEEECC---CCCEE
Confidence 3444433 367888877 31 12344332 56888887642221 111111 1123344554442 24577
Q ss_pred EEEecCce-EEEEeCCc--cccccCcCCccCCCCeEEEEeeCCCeEEEEEc-CcEEEEccCcccccCCCCCCCCeeeeEe
Q 044070 540 VLSFVEET-RVLRVGLN--FTDVTDSVGFRPDVCTLACGLVADGLLVQIHQ-NAVRLCMPTMVAHSGGIPLSYPVCTSWF 615 (903)
Q Consensus 540 vlS~~~~T-~vl~~~~~--~~e~~~~~~f~~~~~Tl~a~~~~~~~ivQVT~-~~irl~~~~~~~~~~~~~~~~~~~~~w~ 615 (903)
+.+..+.+ .++.+... .+.+. .+......+.+-.+.++.++=.+. ..|++.+.. .....+.
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~------------~~~~~~~ 139 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPLY---TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG------------SLVYNLQ 139 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC-C---EECCCSSCEEEEEEETTEEEEEETTSEEEEEETT------------EEEEEEE
T ss_pred EEecCCCeEEEEEeeecCCCCccc---chhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC------------cEEEecc
Confidence 77766665 45655331 11111 011111122222222233333332 234455421 1233444
Q ss_pred cCCeeEEEEEe---cCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCC
Q 044070 616 PEHVSISLGAV---AHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSN 692 (903)
Q Consensus 616 ~~~~~I~~As~---~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~ 692 (903)
.....|...+. .++.++.+..++.+.++. . + +............|.|+++.+.
T Consensus 140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d-~-----~--~~~~~~~~~~~~~i~~~~~~~~---------------- 195 (313)
T 3odt_A 140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQ-N-----D--KVIKTFSGIHNDVVRHLAVVDD---------------- 195 (313)
T ss_dssp CCSSCEEEEEEEETTTTEEEEEETTSCEEEEE-T-----T--EEEEEECSSCSSCEEEEEEEET----------------
T ss_pred cCCCceeEEEEccCCCCEEEEEECCCCEEEEe-c-----C--ceEEEEeccCcccEEEEEEcCC----------------
Confidence 32334544443 466777776677766552 1 1 2222222335677888888652
Q ss_pred CCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCc
Q 044070 693 SSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGM 772 (903)
Q Consensus 693 ~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~ 772 (903)
.. +++|..|+.|++|++...+.+..+.. .. ....++.+..-+ +|+.|-.||.
T Consensus 196 ------------~~-~~~~~~dg~i~i~d~~~~~~~~~~~~----------~~---~~i~~~~~~~~~--~l~~~~~dg~ 247 (313)
T 3odt_A 196 ------------GH-FISCSNDGLIKLVDMHTGDVLRTYEG----------HE---SFVYCIKLLPNG--DIVSCGEDRT 247 (313)
T ss_dssp ------------TE-EEEEETTSEEEEEETTTCCEEEEEEC----------CS---SCEEEEEECTTS--CEEEEETTSE
T ss_pred ------------Ce-EEEccCCCeEEEEECCchhhhhhhhc----------CC---ceEEEEEEecCC--CEEEEecCCE
Confidence 23 88899999999999976554322210 00 012344444333 5889999999
Q ss_pred EEEEEec
Q 044070 773 LLRFEWP 779 (903)
Q Consensus 773 l~~~~~~ 779 (903)
+..|.+.
T Consensus 248 v~iwd~~ 254 (313)
T 3odt_A 248 VRIWSKE 254 (313)
T ss_dssp EEEECTT
T ss_pred EEEEECC
Confidence 9888764
No 64
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=89.47 E-value=13 Score=38.54 Aligned_cols=157 Identities=6% Similarity=-0.017 Sum_probs=81.2
Q ss_pred CccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec----CCEEEEEEeCCc
Q 044070 564 GFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA----HNMIIVSTSNPC 639 (903)
Q Consensus 564 ~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~----~~~vvva~~~~~ 639 (903)
.|..+.+.|++|... ..|++.+..... .............|.+.+.. +.+++-+..++.
T Consensus 16 ~~s~~g~~las~s~D---------~~v~iw~~~~~~--------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 16 VMDYYGKRMATCSSD---------KTIKIFEVEGET--------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp EECTTSSEEEEEETT---------SCEEEEEBCSSC--------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred EECCCCCEEEEEeCC---------CEEEEEecCCCC--------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 455666777777642 335555433210 01223333323357666653 345555555666
Q ss_pred EEEEEeEEeccccceEEEEeee-ccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEE
Q 044070 640 FLFILGVRSLSVSHYEIYEMQH-MRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVE 718 (903)
Q Consensus 640 il~~~~~~~~~~g~~~L~~~~~-~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~ 718 (903)
+.+.... .+ +...... ......|.|+++.+... ..+|++|.+|++|+
T Consensus 79 v~iWd~~----~~--~~~~~~~~~~h~~~v~~v~~~p~~~--------------------------g~~l~s~s~d~~v~ 126 (297)
T 2pm7_B 79 VMIWKEE----NG--RWSQIAVHAVHSASVNSVQWAPHEY--------------------------GPMLLVASSDGKVS 126 (297)
T ss_dssp EEEEEBS----SS--CBCCCEEECCCSSCEEEEEECCGGG--------------------------CSEEEEEETTSEEE
T ss_pred EEEEEcC----CC--ceEEEEEeecCCCceeEEEeCcCCC--------------------------CcEEEEEECCCcEE
Confidence 6554322 22 1111111 12356788888866311 35899999999999
Q ss_pred EEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec------------CccEEEEEecCCcEEEEEecC
Q 044070 719 VLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA------------DQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 719 i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~------------~~~~L~vgl~~G~l~~~~~~~ 780 (903)
+|.+........... . +.. ....++.+... ...+|..|-.||.+..|.+..
T Consensus 127 ~wd~~~~~~~~~~~~---~-----~h~---~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~ 189 (297)
T 2pm7_B 127 VVEFKENGTTSPIII---D-----AHA---IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189 (297)
T ss_dssp EEEBCSSSCBCCEEE---E-----CCS---SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred EEEecCCCceeeeee---e-----ccc---CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence 999875432111110 0 000 00123322221 135799999999999998864
No 65
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=89.08 E-value=26 Score=37.64 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCC
Q 044070 664 LQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMG 743 (903)
Q Consensus 664 l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~ 743 (903)
....|.|+++.+. ..+||+|+.|++|+||.+...+.+..+ +.
T Consensus 268 ~~~~V~~~~~Spd----------------------------g~~lasgs~D~~V~iwd~~~~~~~~~~----------~~ 309 (365)
T 4h5i_A 268 RFKGITSMDVDMK----------------------------GELAVLASNDNSIALVKLKDLSMSKIF----------KQ 309 (365)
T ss_dssp SCSCEEEEEECTT----------------------------SCEEEEEETTSCEEEEETTTTEEEEEE----------TT
T ss_pred CCCCeEeEEECCC----------------------------CCceEEEcCCCEEEEEECCCCcEEEEe----------cC
Confidence 3567899998763 469999999999999998765433221 11
Q ss_pred CCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecCC
Q 044070 744 TAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPD 781 (903)
Q Consensus 744 ~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~~ 781 (903)
+... ...++.+.+ +..+|.-|-.||.+-.+++...
T Consensus 310 gH~~--~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 AHSF--AITEVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SSSS--CEEEEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred cccC--CEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 1000 113444432 4568999999999999998643
No 66
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=88.95 E-value=24 Score=36.65 Aligned_cols=239 Identities=9% Similarity=-0.022 Sum_probs=115.9
Q ss_pred ceEEEEC-CCeEEEEEeeCCeEEEEEeCCc--eEEeeeecccccccceEEeecCCCCCCe-EEEEeeCCCCCcEEEEec-
Q 044070 430 KALLWVE-GRFLSAFVEMGDGMVLKEENGR--LVYTSPIQNIAPILDMSVVDYHDEKRDQ-MFACCGVAPEGSLRIIRS- 504 (903)
Q Consensus 430 ssl~~l~-~~~lFvgS~~gds~L~~~~~~~--~~~~~~l~N~gPI~D~~v~~~~~~~~~~-lva~sG~g~~GsL~~lr~- 504 (903)
+++.... +.+|++|+.-|.=.+|.+.... .........-++|..+++... .+ .+++++ .+|.+++..-
T Consensus 15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~--~dg~i~~wd~~ 87 (342)
T 1yfq_A 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-----TDLQIYVGT--VQGEILKVDLI 87 (342)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-----SSEEEEEEE--TTSCEEEECSS
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC-----CCcEEEEEc--CCCeEEEEEec
Confidence 3344443 4567777655555666665433 223333455678888887652 23 344433 4688888753
Q ss_pred cCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceE-EEEeCC---cc----ccccCcCCccCCCCeEEEEe
Q 044070 505 GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETR-VLRVGL---NF----TDVTDSVGFRPDVCTLACGL 576 (903)
Q Consensus 505 gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~-vl~~~~---~~----~e~~~~~~f~~~~~Tl~a~~ 576 (903)
.-+. ...+. ....-..++.+.... ..+|+.+..+.+. ++.+.. +. .+... .+... ..+.+-.
T Consensus 88 ~~~~--~~~~~-~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~-~~v~~~~ 157 (342)
T 1yfq_A 88 GSPS--FQALT-NNEANLGICRICKYG----DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--NTKVK-NKIFTMD 157 (342)
T ss_dssp SSSS--EEECB-SCCCCSCEEEEEEET----TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--SSSSC-CCEEEEE
T ss_pred cCCc--eEecc-ccCCCCceEEEEeCC----CCEEEEEcCCCeEEEEcccccccccccccCCeee--EEeeC-CceEEEE
Confidence 2211 12221 100234556665542 3566665555553 443321 00 11011 12222 2333333
Q ss_pred eCCCeEEEEEcC-cEEEEccCc-ccccCCCCCCCCeeeeEe-cCCeeEEEEEec---CCEEEEEEeCCcEEEEEeEEecc
Q 044070 577 VADGLLVQIHQN-AVRLCMPTM-VAHSGGIPLSYPVCTSWF-PEHVSISLGAVA---HNMIIVSTSNPCFLFILGVRSLS 650 (903)
Q Consensus 577 ~~~~~ivQVT~~-~irl~~~~~-~~~~~~~~~~~~~~~~w~-~~~~~I~~As~~---~~~vvva~~~~~il~~~~~~~~~ 650 (903)
+..+.++-.+.. .|++++... .. ....... +....|.+.+.. +.+++++..++.+.++....
T Consensus 158 ~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~--- 225 (342)
T 1yfq_A 158 TNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD--- 225 (342)
T ss_dssp ECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT---
T ss_pred ecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC---
Confidence 333334444444 677777554 21 0111222 233456666664 45666666666655432221
Q ss_pred c-----cceEEEEeeec-------cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEE
Q 044070 651 V-----SHYEIYEMQHM-------RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVE 718 (903)
Q Consensus 651 ~-----g~~~L~~~~~~-------~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~ 718 (903)
. .. .+...... .....|.|+++.+. ..+|++|..|++|+
T Consensus 226 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----------------------------~~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 226 QGDDYNSS-KRFAFRCHRLNLKDTNLAYPVNSIEFSPR----------------------------HKFLYTAGSDGIIS 276 (342)
T ss_dssp TCCSTTCT-TCEEEECCCCCTTCCSSCCCEEEEEECTT----------------------------TCCEEEEETTSCEE
T ss_pred CCcccccc-cceeeecccccccccccceeEEEEEEcCC----------------------------CCEEEEecCCceEE
Confidence 1 00 11111111 11337888888652 45788999999999
Q ss_pred EEEccCCC
Q 044070 719 VLSFVPKE 726 (903)
Q Consensus 719 i~sl~~~~ 726 (903)
+|++...+
T Consensus 277 vwd~~~~~ 284 (342)
T 1yfq_A 277 CWNLQTRK 284 (342)
T ss_dssp EEETTTTE
T ss_pred EEcCccHh
Confidence 99987654
No 67
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=88.70 E-value=28 Score=37.15 Aligned_cols=65 Identities=14% Similarity=0.005 Sum_probs=42.7
Q ss_pred ceEEEEEecCCe-EEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecCC
Q 044070 705 GYTFVIGTHRPS-VEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPD 781 (903)
Q Consensus 705 ~~~l~vg~~d~~-v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~~ 781 (903)
..+||.|..|++ |+||++...+.+..+.. +... ....++.+.. +..+|..|-.||.+..|.+...
T Consensus 207 g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~---------g~h~--~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 207 SDMVATCSQDGTIIRVFKTEDGVLVREFRR---------GLDR--ADVVDMKWST-DGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp SSEEEEEETTCSEEEEEETTTCCEEEEEEC---------TTCC--SCEEEEEECT-TSCEEEEEETTCEEEEEESSCC
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEc---------CCCC--CcEEEEEECC-CCCEEEEEECCCEEEEEEccCC
Confidence 469999999998 99999986654433210 0000 0113443332 4578999999999999998643
No 68
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=88.26 E-value=16 Score=39.97 Aligned_cols=111 Identities=9% Similarity=0.012 Sum_probs=65.5
Q ss_pred eEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCC
Q 044070 620 SISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPA 697 (903)
Q Consensus 620 ~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~ 697 (903)
.|.+.+.. +.+++.+..++.+.++... .+ +... .-......|.|+++.+.
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~----~~--~~~~-~~~~h~~~V~~v~~~p~--------------------- 203 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQ----GF--ECIR-TMHGHDHNVSSVSIMPN--------------------- 203 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETT----SS--CEEE-CCCCCSSCEEEEEECSS---------------------
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCC----CC--ceeE-EEcCCCCCEEEEEEeCC---------------------
Confidence 46665554 4455656666766554221 11 2211 11234578999998762
Q ss_pred CCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEE
Q 044070 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFE 777 (903)
Q Consensus 698 ~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~ 777 (903)
..+++.|.+|++|++|.+.....+..+.. .. .....+.+. -+..+|..|-.||.+..|.
T Consensus 204 -------~~~l~s~s~D~~i~~wd~~~~~~~~~~~~----------h~---~~v~~~~~~-~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 204 -------GDHIVSASRDKTIKMWEVQTGYCVKTFTG----------HR---EWVRMVRPN-QDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp -------SSEEEEEETTSEEEEEETTTCCEEEEEEC----------CS---SCEEEEEEC-TTSSEEEEEETTSCEEEEE
T ss_pred -------CCEEEEEeCCCeEEEEECCCCcEEEEEeC----------CC---ccEEEEEEC-CCCCEEEEEcCCCeEEEEE
Confidence 45889999999999999876554322210 00 011222211 2456789999999999887
Q ss_pred ec
Q 044070 778 WP 779 (903)
Q Consensus 778 ~~ 779 (903)
+.
T Consensus 263 ~~ 264 (410)
T 1vyh_C 263 VA 264 (410)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 69
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=87.83 E-value=29 Score=36.29 Aligned_cols=74 Identities=11% Similarity=0.240 Sum_probs=45.6
Q ss_pred cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccC
Q 044070 663 RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTM 742 (903)
Q Consensus 663 ~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~ 742 (903)
.....|.|+++.+. ..+|+.|..|++|+||++...+.+..+..
T Consensus 194 ~h~~~v~~~~~sp~----------------------------g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------- 236 (319)
T 3frx_A 194 GHNSNINTLTASPD----------------------------GTLIASAGKDGEIMLWNLAAKKAMYTLSA--------- 236 (319)
T ss_dssp CCCSCEEEEEECTT----------------------------SSEEEEEETTCEEEEEETTTTEEEEEEEC---------
T ss_pred CCCCcEEEEEEcCC----------------------------CCEEEEEeCCCeEEEEECCCCcEEEEecC---------
Confidence 34678899988662 46899999999999999876543322210
Q ss_pred CCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 743 GTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 743 ~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
.. ...++.+.+ +..+|.++..+| +..|.++.
T Consensus 237 ~~-----~v~~~~~sp-~~~~la~~~~~~-i~v~~~~~ 267 (319)
T 3frx_A 237 QD-----EVFSLAFSP-NRYWLAAATATG-IKVFSLDP 267 (319)
T ss_dssp CS-----CEEEEEECS-SSSEEEEEETTE-EEEEEETT
T ss_pred CC-----cEEEEEEcC-CCCEEEEEcCCC-cEEEEeCc
Confidence 00 113443332 355677777666 55566653
No 70
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.76 E-value=22 Score=37.59 Aligned_cols=113 Identities=8% Similarity=0.086 Sum_probs=64.8
Q ss_pred eEEEEEec----CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 620 SISLGAVA----HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 620 ~I~~As~~----~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
.|.+.+.. +.+++.+..++.+.++... .+ +............|.|+++.+.
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~----~~--~~~~~~~~~~~~~i~~~~~~pd------------------- 181 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYE----DD--SQYIVHSAKSDVEYSSGVLHKD------------------- 181 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESS----SS--CEEEEECCCSSCCCCEEEECTT-------------------
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECC----CC--cEEEEEecCCCCceEEEEECCC-------------------
Confidence 45555543 3455555566776655332 22 2222222344556889988762
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccCCCCe-eEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEE
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGL-RVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLL 774 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l-~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~ 774 (903)
..++++|+.|++|+||++...+.+ ..+ . .+.. ....++.+.. +..+|..|- +|.+.
T Consensus 182 ---------g~~lasg~~dg~i~iwd~~~~~~~~~~~-----~----~~h~---~~v~~l~fs~-~g~~l~s~~-~~~v~ 238 (343)
T 3lrv_A 182 ---------SLLLALYSPDGILDVYNLSSPDQASSRF-----P----VDEE---AKIKEVKFAD-NGYWMVVEC-DQTVV 238 (343)
T ss_dssp ---------SCEEEEECTTSCEEEEESSCTTSCCEEC-----C----CCTT---SCEEEEEECT-TSSEEEEEE-SSBEE
T ss_pred ---------CCEEEEEcCCCEEEEEECCCCCCCccEE-----e----ccCC---CCEEEEEEeC-CCCEEEEEe-CCeEE
Confidence 468999999999999999876543 111 1 0000 0113444432 356777777 66887
Q ss_pred EEEecC
Q 044070 775 RFEWPP 780 (903)
Q Consensus 775 ~~~~~~ 780 (903)
.|.+..
T Consensus 239 iwd~~~ 244 (343)
T 3lrv_A 239 CFDLRK 244 (343)
T ss_dssp EEETTS
T ss_pred EEEcCC
Confidence 787653
No 71
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=87.72 E-value=17 Score=38.47 Aligned_cols=61 Identities=7% Similarity=0.012 Sum_probs=40.0
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..+++.|.+|++|++|++...+.+..+.. .. . ...++.+.. +..+|+.|-.||.+..|.+.
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~----------h~-~--~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVG----------HQ-S--EVYSVAFSP-DNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEEEEC----------CC-S--CEEEEEECS-STTEEEEEETTSCEEEEESS
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcC----------CC-C--cEEEEEECC-CCCEEEEEcCCCEEEEEecc
Confidence 45889999999999999976554322210 00 0 113443332 35678899999999999874
No 72
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=87.38 E-value=12 Score=39.43 Aligned_cols=118 Identities=9% Similarity=0.116 Sum_probs=66.3
Q ss_pred eeEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeecc-CCCceeEEEccCCCCcccCCCCCccccCCCCCCC
Q 044070 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMR-LQSELSCISIPQKHPERRKSSSPISLVSNSSVPA 697 (903)
Q Consensus 619 ~~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~-l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~ 697 (903)
..|.+.+...+.++.+..++.+.++... .+..++....... ....|.|+++.+.
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~----~~~~~~~~~~~~~~h~~~v~~v~~sp~--------------------- 69 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVK----YDDFTLIDVLDETAHKKAIRSVAWRPH--------------------- 69 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECS----SSCCEEEEEECTTCCCSCEEEEEECTT---------------------
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEec----CCCeEEEEEEecCCccCCEEEEEECCC---------------------
Confidence 4577777776655655566776655322 2212232222122 5667999998762
Q ss_pred CCCccccceEEEEEecCCeEEEEEccCCC----CeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcE
Q 044070 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKE----GLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGML 773 (903)
Q Consensus 698 ~~~~~~~~~~l~vg~~d~~v~i~sl~~~~----~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l 773 (903)
..+|+.|.+|++|+||++.... ....+. .+ .+... ...++.+.+ +..+|..|-.||.+
T Consensus 70 -------~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~------~~h~~--~V~~v~~sp-~g~~las~s~D~~v 131 (330)
T 2hes_X 70 -------TSLLAAGSFDSTVSIWAKEESADRTFEMDLLA--II------EGHEN--EVKGVAWSN-DGYYLATCSRDKSV 131 (330)
T ss_dssp -------SSEEEEEETTSCEEEEEC-------CCCEEEE--EE------C------CEEEEEECT-TSCEEEEEETTSCE
T ss_pred -------CCEEEEEeCCCcEEEEEcccCcCccccceeEE--EE------cCCCC--cEEEEEECC-CCCEEEEEeCCCEE
Confidence 4589999999999999985321 011111 11 01000 112333322 35689999999999
Q ss_pred EEEEec
Q 044070 774 LRFEWP 779 (903)
Q Consensus 774 ~~~~~~ 779 (903)
..|.++
T Consensus 132 ~iwd~~ 137 (330)
T 2hes_X 132 WIWETD 137 (330)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999884
No 73
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=87.38 E-value=32 Score=36.36 Aligned_cols=203 Identities=8% Similarity=-0.016 Sum_probs=95.7
Q ss_pred cccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCce-eEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCc
Q 044070 468 IAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISL-EKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEE 546 (903)
Q Consensus 468 ~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~-~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~ 546 (903)
-+||..+++... .+++++++ .+|.+++..-.-+- +.+..+ ...-..++.+....+ ..+|+....+.
T Consensus 11 ~~~v~~~~~s~~-----g~~l~~~~--~d~~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~s~~---~~~l~s~s~d~ 77 (377)
T 3dwl_C 11 PKPSYEHAFNSQ-----RTEFVTTT--ATNQVELYEQDGNGWKHARTF---SDHDKIVTCVDWAPK---SNRIVTCSQDR 77 (377)
T ss_dssp SSCCSCCEECSS-----SSEEECCC--SSSCBCEEEEETTEEEECCCB---CCCSSCEEEEEECTT---TCCEEEEETTS
T ss_pred CCcEEEEEECCC-----CCEEEEec--CCCEEEEEEccCCceEEEEEE---ecCCceEEEEEEeCC---CCEEEEEeCCC
Confidence 358888887541 23444433 36777776543221 222222 123345677766532 35666655554
Q ss_pred e-EEEEeCCcc--cccc---C------cCCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeE
Q 044070 547 T-RVLRVGLNF--TDVT---D------SVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSW 614 (903)
Q Consensus 547 T-~vl~~~~~~--~e~~---~------~~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w 614 (903)
+ .++.+...- .... . ...|..+...|++|.- ...|++.+...... ......+
T Consensus 78 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~-------~~~~~~~ 141 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG---------ARVISVCYFEQEND-------WWVSKHL 141 (377)
T ss_dssp SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES---------SSCEEECCC------------CCCCEEE
T ss_pred eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec---------CCeEEEEEECCccc-------ceeeeEe
Confidence 4 455553211 1110 0 0123333444444432 23456655443210 0012233
Q ss_pred ec-CCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccc--------c-ceE-EEEeeeccCCCceeEEEccCCCCccc
Q 044070 615 FP-EHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSV--------S-HYE-IYEMQHMRLQSELSCISIPQKHPERR 681 (903)
Q Consensus 615 ~~-~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~--------g-~~~-L~~~~~~~l~~eiscl~i~~~~~g~~ 681 (903)
.. ....|.+.+.. +.+++.+..++.+.++........ + ... -.....+.....|.|+++.+.
T Consensus 142 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----- 216 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPS----- 216 (377)
T ss_dssp CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTT-----
T ss_pred ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCC-----
Confidence 32 33457666665 346666666777665533100000 0 000 011222255677889988662
Q ss_pred CCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCC
Q 044070 682 KSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEG 727 (903)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~ 727 (903)
..+|+.|..|++|++|++...+.
T Consensus 217 -----------------------~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 217 -----------------------GNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp -----------------------SSCEEEEETTTEEC-CEECSTTS
T ss_pred -----------------------CCEEEEEeCCCcEEEEECCCCCC
Confidence 45889999999999999987654
No 74
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=87.31 E-value=29 Score=35.81 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=17.2
Q ss_pred ceEEEEEecCCeEEEEEccC
Q 044070 705 GYTFVIGTHRPSVEVLSFVP 724 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~ 724 (903)
..+||.|..|++|+||++..
T Consensus 318 g~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 318 GQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp SSEEEEEETTSCEEEEEEEC
T ss_pred CCEEEEEeCCCEEEEEeCCC
Confidence 46899999999999998753
No 75
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=87.01 E-value=40 Score=36.99 Aligned_cols=109 Identities=6% Similarity=0.057 Sum_probs=68.5
Q ss_pred eEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCC
Q 044070 620 SISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALP 699 (903)
Q Consensus 620 ~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~ 699 (903)
.|.+.+..+++++.+..++.+..+... ++ +.... -......|.|+++.+.
T Consensus 272 ~v~~~~~~~~~l~~~~~d~~i~vwd~~----~~--~~~~~-~~~~~~~v~~~~~~~~----------------------- 321 (464)
T 3v7d_B 272 SVRTVSGHGNIVVSGSYDNTLIVWDVA----QM--KCLYI-LSGHTDRIYSTIYDHE----------------------- 321 (464)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETT----TT--EEEEE-ECCCSSCEEEEEEETT-----------------------
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECC----CC--cEEEE-ecCCCCCEEEEEEcCC-----------------------
Confidence 455556667788888777876655322 22 22211 1234577888888652
Q ss_pred CccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 700 AGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 700 ~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..++++|..|++|++|++...+.+..+. +.. ....++. +...+|+.|-.||.+..|.+.
T Consensus 322 -----~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----------~h~--~~v~~~~---~~~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 322 -----RKRCISASMDTTIRIWDLENGELMYTLQ-----------GHT--ALVGLLR---LSDKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp -----TTEEEEEETTSCEEEEETTTTEEEEEEC-----------CCS--SCEEEEE---ECSSEEEEEETTSEEEEEETT
T ss_pred -----CCEEEEEeCCCcEEEEECCCCcEEEEEe-----------CCC--CcEEEEE---EcCCEEEEEeCCCcEEEEECC
Confidence 4589999999999999987654332211 100 0112333 346789999999999988875
No 76
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=86.89 E-value=35 Score=36.30 Aligned_cols=119 Identities=9% Similarity=0.069 Sum_probs=66.9
Q ss_pred eeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCcc
Q 044070 611 CTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPIS 688 (903)
Q Consensus 611 ~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~ 688 (903)
...+......|.+.+.. +.+++.+..++.+.++... .+ ..+...........++++++.+.
T Consensus 233 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~----~~-~~~~~~~~~~~~~~~~~~~~s~~------------ 295 (354)
T 2pbi_B 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR----AD-REVAIYSKESIIFGASSVDFSLS------------ 295 (354)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TT-EEEEEECCTTCCSCEEEEEECTT------------
T ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC----CC-cEEEEEcCCCcccceeEEEEeCC------------
Confidence 33443333457666664 5566666666766655321 11 12222222233456778877652
Q ss_pred ccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEe
Q 044070 689 LVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGL 768 (903)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl 768 (903)
..++++|..|++|+||++...+.+..+. +.. + ...++.+.+ +..+|..|-
T Consensus 296 ----------------g~~l~~g~~d~~i~vwd~~~~~~~~~l~----------~h~-~--~v~~l~~sp-dg~~l~sgs 345 (354)
T 2pbi_B 296 ----------------GRLLFAGYNDYTINVWDVLKGSRVSILF----------GHE-N--RVSTLRVSP-DGTAFCSGS 345 (354)
T ss_dssp ----------------SSEEEEEETTSCEEEEETTTCSEEEEEC----------CCS-S--CEEEEEECT-TSSCEEEEE
T ss_pred ----------------CCEEEEEECCCcEEEEECCCCceEEEEE----------CCC-C--cEEEEEECC-CCCEEEEEc
Confidence 4689999999999999987654332211 110 0 113343332 356788999
Q ss_pred cCCcEEEE
Q 044070 769 RNGMLLRF 776 (903)
Q Consensus 769 ~~G~l~~~ 776 (903)
.||.+..|
T Consensus 346 ~D~~v~vW 353 (354)
T 2pbi_B 346 WDHTLRVW 353 (354)
T ss_dssp TTSEEEEE
T ss_pred CCCCEEec
Confidence 99988765
No 77
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=86.85 E-value=30 Score=35.43 Aligned_cols=166 Identities=13% Similarity=0.179 Sum_probs=84.2
Q ss_pred EEEEeeccCCCCCCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEEC---CCeEEEEEeeCCeEEEEEe
Q 044070 379 VCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVE---GRFLSAFVEMGDGMVLKEE 455 (903)
Q Consensus 379 ~~~~~~~~~~~~~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~---~~~lFvgS~~gds~L~~~~ 455 (903)
+++.+|.| ++..++.+..+|.+....+.......+.. ....+......++.... +.+|+.|+.-|.=.+|.+.
T Consensus 14 v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 14 VHDVVYDF---YGRHVATCSSDQHIKVFKLDKDTSNWELS-DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp EEEEEECS---SSSEEEEEETTSEEEEEEECSSSCCEEEE-EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred eeEEEEcC---CCCEEEEeeCCCeEEEEECCCCCCcceec-ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 44444533 25567788999999888776433211221 11112233345566553 6788888887777777776
Q ss_pred CCc-------eEEeeee-cccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEec--cCceeE------EeecC-CCC
Q 044070 456 NGR-------LVYTSPI-QNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS--GISLEK------LLRTA-PIY 518 (903)
Q Consensus 456 ~~~-------~~~~~~l-~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~--gi~~~~------~~~~~-~~~ 518 (903)
... .+.+..+ ..-++|.+++..... ..+++++++ .+|.+++..- +-.... ..... ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH---LGLKLACLG--NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEE--TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCC---CCcEEEEec--CCCcEEEecCCChHHhccccccccccccccccC
Confidence 421 1333444 345788888765421 023444443 4678887652 111110 00000 001
Q ss_pred CCccEEEEeeecCCCCcceEEEEEecCceEEEEeC
Q 044070 519 QGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVG 553 (903)
Q Consensus 519 ~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~~ 553 (903)
.....++.+..........+++++..+...++...
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~ 199 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG 199 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEEC
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEcc
Confidence 12233444444322112457777777777766553
No 78
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=86.82 E-value=16 Score=39.97 Aligned_cols=101 Identities=15% Similarity=0.261 Sum_probs=59.7
Q ss_pred CCEEEEEEeCCcEEEEEeEEeccccceEEEEeee-ccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccce
Q 044070 628 HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQH-MRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGY 706 (903)
Q Consensus 628 ~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~-~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (903)
++.|++++ ++++.+. .. .+| ++..... ......|+||++.+. ..
T Consensus 116 ~n~lAvgl-d~tV~lW-d~---~tg--~~~~~~~~~~~~~~V~sv~fspd----------------------------g~ 160 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLW-SA---SSG--DILQLLQMEQPGEYISSVAWIKE----------------------------GN 160 (420)
T ss_dssp TSEEEEEE-TTEEEEE-ET---TTC--CEEEEEECCSTTCCEEEEEECTT----------------------------SS
T ss_pred CCEEEEEe-CCEEEEE-EC---CCC--CEEEEEEecCCCCcEEEEEECCC----------------------------CC
Confidence 44566665 4444333 22 133 3333222 233567999999762 46
Q ss_pred EEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 707 TFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 707 ~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
+||+|+.|++|+||.+...+.+.... + ....+.-......+|..|-.||.+..+...
T Consensus 161 ~lasgs~Dg~v~iWd~~~~~~~~~~~-----------~-----h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~ 217 (420)
T 4gga_A 161 YLAVGTSSAEVQLWDVQQQKRLRNMT-----------S-----HSARVGSLSWNSYILSSGSRSGHIHHHDVR 217 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC-----------C-----CSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCeEEEEEcCCCcEEEEEe-----------C-----CCCceEEEeeCCCEEEEEeCCCceeEeeec
Confidence 89999999999999987654332221 1 001111112235678999999999888754
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=86.57 E-value=40 Score=36.65 Aligned_cols=235 Identities=8% Similarity=0.048 Sum_probs=106.9
Q ss_pred cceEEEEC-CCeEEEEEeeCCeEEEEEeCCceEEeeeecc-cccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccC
Q 044070 429 CKALLWVE-GRFLSAFVEMGDGMVLKEENGRLVYTSPIQN-IAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGI 506 (903)
Q Consensus 429 ~ssl~~l~-~~~lFvgS~~gds~L~~~~~~~~~~~~~l~N-~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi 506 (903)
.+++..-. +.+|+.|+.-|.=.+|.++.. +.+..+.. -+++..+.. + ..++++++ .++.+++.....
T Consensus 150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--~~~~~~~~h~~~v~~~s~-~------~~~l~sgs--~d~~i~~~d~~~ 218 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARVGSLSW-N------SYILSSGS--RSGHIHHHDVRV 218 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEE-E------TTEEEEEE--TTSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEcCCC--cEEEEEeCCCCceEEEee-C------CCEEEEEe--CCCceeEeeecc
Confidence 34555554 467777877666666665432 33333432 233433322 1 13344333 456676665444
Q ss_pred ceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCce-EEEEeCCccccccCcCCccCCCCeEEEEee-C-CCeEE
Q 044070 507 SLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEET-RVLRVGLNFTDVTDSVGFRPDVCTLACGLV-A-DGLLV 583 (903)
Q Consensus 507 ~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T-~vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~-~-~~~iv 583 (903)
....+..+. .....++.+... ....+++....+.+ .++.....-........+......+.+-.+ . +..++
T Consensus 219 ~~~~~~~~~---~h~~~~~~~~~~---~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~l 292 (420)
T 4gga_A 219 AEHHVATLS---GHSQEVCGLRWA---PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292 (420)
T ss_dssp SSCEEEEEE---CCSSCEEEEEEC---TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred cceeeEEec---ccccceeeeeec---CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEE
Confidence 444333332 112223333332 22356665555444 345442210000000001111111222111 1 12222
Q ss_pred EE-E---cCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEe--cCCEEEEEE--eCCcEEEEEeEEeccccceE
Q 044070 584 QI-H---QNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAV--AHNMIIVST--SNPCFLFILGVRSLSVSHYE 655 (903)
Q Consensus 584 QV-T---~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~--~~~~vvva~--~~~~il~~~~~~~~~~g~~~ 655 (903)
-+ + ...|++.+.... ........ +..+..+.. .+..++++. .++.|.++... ++. .
T Consensus 293 a~~~gs~D~~I~iwd~~t~----------~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~----~~~-~ 356 (420)
T 4gga_A 293 ATGGGTSDRHIRIWNVCSG----------ACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYP----TMA-K 356 (420)
T ss_dssp EEEECTTTCEEEEEETTTT----------EEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETT----TCC-E
T ss_pred EEEeecCCCEEEEEeCCcc----------ccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECC----CCc-E
Confidence 22 1 245777775543 12333332 223433333 255666554 34566554322 221 2
Q ss_pred EEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCC
Q 044070 656 IYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKE 726 (903)
Q Consensus 656 L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~ 726 (903)
+.+. ......|.|+++.+. ..+||.|.+|++|+||++.+.+
T Consensus 357 v~~l--~gH~~~V~~l~~spd----------------------------g~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 357 VAEL--KGHTSRVLSLTMSPD----------------------------GATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEE--CCCSSCEEEEEECTT----------------------------SSCEEEEETTTEEEEECCSCSS
T ss_pred EEEE--cCCCCCEEEEEEcCC----------------------------CCEEEEEecCCeEEEEECCCCC
Confidence 2221 124678999998763 4588899999999999986543
No 80
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=86.22 E-value=26 Score=37.88 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=66.3
Q ss_pred EEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCC
Q 044070 621 ISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPAL 698 (903)
Q Consensus 621 I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~ 698 (903)
|.+.+.. +.+++.+..++.+.++... .+ +.... -......|.|+++.+.
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~----~~--~~~~~-~~~h~~~v~~~~~~p~---------------------- 176 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIE----NR--KIVMI-LQGHEQDIYSLDYFPS---------------------- 176 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETT----TT--EEEEE-ECCCSSCEEEEEECTT----------------------
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECC----CC--cEEEE-EccCCCCEEEEEEcCC----------------------
Confidence 6555554 4566666667776655322 22 22221 1234567899988652
Q ss_pred CCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEe
Q 044070 699 PAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEW 778 (903)
Q Consensus 699 ~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~ 778 (903)
..+|+.|..|++|++|++...+....+ .. .. -..++.+...+..+|..|-.||.+..|.+
T Consensus 177 ------~~~l~s~s~d~~v~iwd~~~~~~~~~~-----~~----~~-----~v~~~~~~~~~~~~l~~~s~d~~v~iwd~ 236 (393)
T 1erj_A 177 ------GDKLVSGSGDRTVRIWDLRTGQCSLTL-----SI----ED-----GVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236 (393)
T ss_dssp ------SSEEEEEETTSEEEEEETTTTEEEEEE-----EC----SS-----CEEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred ------CCEEEEecCCCcEEEEECCCCeeEEEE-----Ec----CC-----CcEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 458889999999999998764432111 10 01 11344444335678999999999988875
Q ss_pred c
Q 044070 779 P 779 (903)
Q Consensus 779 ~ 779 (903)
.
T Consensus 237 ~ 237 (393)
T 1erj_A 237 E 237 (393)
T ss_dssp T
T ss_pred C
Confidence 4
No 81
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=86.19 E-value=27 Score=37.42 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=42.2
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCC---cEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNG---MLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G---~l~~~~~~~ 780 (903)
..++++|..|++|++|++...+.+..+.... ...+.. ....++.+..-+..+|..|..+| .+..|.+..
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~~~---~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTS----PNSGIK---QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEEEEEECCCC----CSSCCC---CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred CcEEEEEcCCCCEEEEECCCCCcceEEeccc----cccccC---CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 3588899999999999987654322221000 000000 12245555544567899999998 998888764
No 82
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=86.11 E-value=26 Score=36.82 Aligned_cols=115 Identities=13% Similarity=0.211 Sum_probs=69.7
Q ss_pred CCcCeEEEE--cCCEEEEEEecCCCcEEEEEEEEec-c-ceeEeeeeeccccccccCCCCCCccEEEE-EeCCCcEEEEE
Q 044070 54 PTSNDVVFG--KETSIELVIIGEDGIVQSVCEQAVF-G-TIKDLAVVPWNKKFNAQNSQVMGKDLLVV-ISDSGKLSFLA 128 (903)
Q Consensus 54 ~~~~~LVv~--k~~~LeIy~~~~~g~L~~v~~~~lf-g-~I~~i~~~~~~~~~~~~~p~~~~~D~Llv-~tds~~l~iL~ 128 (903)
++.+ ++++ +.+.+.+|.+..+|++..+...... | .++.++ + .|. + .+|++ ...++.+.+..
T Consensus 150 pdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~-~---------spd--g-~~l~v~~~~~~~v~v~~ 215 (347)
T 3hfq_A 150 PDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV-F---------SPD--G-QYAFLAGELSSQIASLK 215 (347)
T ss_dssp TTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE-E---------CTT--S-SEEEEEETTTTEEEEEE
T ss_pred CCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE-E---------CCC--C-CEEEEEeCCCCEEEEEE
Confidence 3444 6665 3678999999878888776655432 2 344433 2 132 2 34555 45678888888
Q ss_pred EeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeec-cccEEEEEee
Q 044070 129 FCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAY-EDRLGLFSLS 182 (903)
Q Consensus 129 ~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~-e~~l~v~pl~ 182 (903)
++....++..+........+........-++++|+|+.+.++.. ++.+.++-+.
T Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 216 YDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred ecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 88766776554433332222211112235899999998866554 6778887765
No 83
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=85.95 E-value=16 Score=37.89 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=66.9
Q ss_pred cCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCC-CcEEEEEEeCCCcceEeeEE
Q 044070 63 KETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDS-GKLSFLAFCNEMHRFFPVAQ 141 (903)
Q Consensus 63 k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds-~~l~iL~~d~~~~~f~tv~~ 141 (903)
.++.|.+|.++.+|+++.+......+.+..++.- | ..++|+++..+ +.+.+...+....++..+..
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----------p---dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS----------P---DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEEC----------T---TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred CCCeEEEEEECCCCcEEEeeeEecCCCCceEEEC----------C---CCCEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 4789999999778878777776655566665432 2 23456666665 88888777765666554433
Q ss_pred EEecCCCcccccCCcEEEECCCCCeeEEeec-cccEEEEEee
Q 044070 142 VHLSNPGNSRHQLGRMLAVDSSGCLIAVSAY-EDRLGLFSLS 182 (903)
Q Consensus 142 ~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~-e~~l~v~pl~ 182 (903)
.... + ....++++|+++.+++... ++.+.++-+.
T Consensus 80 ~~~~--~-----~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 80 SALP--G-----SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp EECS--S-----CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccC--C-----CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 3321 1 2247999999999888876 5557777664
No 84
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=85.92 E-value=33 Score=35.00 Aligned_cols=64 Identities=6% Similarity=-0.005 Sum_probs=39.9
Q ss_pred cCCEEEEEE--eCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCcccc
Q 044070 627 AHNMIIVST--SNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVII 704 (903)
Q Consensus 627 ~~~~vvva~--~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (903)
.+++++++. .++.+.++... ++ ++... -......|.|+++.+.
T Consensus 251 ~~~~~~~~sg~~d~~i~iwd~~----~~--~~~~~-l~gH~~~V~~l~~spd---------------------------- 295 (318)
T 4ggc_A 251 HYKELISGHGFAQNQLVIWKYP----TM--AKVAE-LKGHTSRVLSLTMSPD---------------------------- 295 (318)
T ss_dssp TTTEEEEEECTTTCCEEEEETT----TC--CEEEE-ECCCSSCEEEEEECTT----------------------------
T ss_pred cccceEEEEEcCCCEEEEEECC----CC--cEEEE-EcCCCCCEEEEEEcCC----------------------------
Confidence 356666655 34556554322 22 22221 1124678999998762
Q ss_pred ceEEEEEecCCeEEEEEccCC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPK 725 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~ 725 (903)
..+||.|.+|++|+||++.+.
T Consensus 296 g~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 296 GATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp SSCEEEEETTTEEEEECCSCC
T ss_pred CCEEEEEecCCeEEEEECCCC
Confidence 458899999999999988653
No 85
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=85.45 E-value=41 Score=35.72 Aligned_cols=69 Identities=7% Similarity=0.003 Sum_probs=38.7
Q ss_pred cceEEEECCC-eEEEEEeeCCeEEEEEeCCceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEec
Q 044070 429 CKALLWVEGR-FLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504 (903)
Q Consensus 429 ~ssl~~l~~~-~lFvgS~~gds~L~~~~~~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~ 504 (903)
+.++..-.++ ++|+++ ..|+.+..++-..-+.+..+..-+++..+++.. +...|+++ |. .+|.++++.-
T Consensus 34 ~~~~~~s~dg~~l~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp----dg~~l~~~-~~-~~~~v~v~d~ 103 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVAN-AHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP----DGKQVYVT-NM-ASSTLSVIDT 103 (391)
T ss_dssp EEEEEECTTSSEEEEEE-GGGTEEEEEETTTTEEEEEEECSSSEEEEEECT----TSSEEEEE-ET-TTTEEEEEET
T ss_pred cceEEECCCCCEEEEEC-CCCCeEEEEECCCCeEEEEEECCCCccceEECC----CCCEEEEE-EC-CCCEEEEEEC
Confidence 3455554444 565554 345666667644445566666666777777643 12345444 32 3577887754
No 86
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=85.08 E-value=6 Score=43.79 Aligned_cols=118 Identities=12% Similarity=0.073 Sum_probs=68.4
Q ss_pred CeeEEEEEec---CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCC
Q 044070 618 HVSISLGAVA---HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSS 694 (903)
Q Consensus 618 ~~~I~~As~~---~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~ 694 (903)
+.+|++.+.+ +..|+....+|.|.+.... .+. .............|+||++.+..
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~----~~~-~~~~~~~~gH~~~V~~l~f~p~~----------------- 176 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG----IKD-KPTFIKGIGAGGSITGLKFNPLN----------------- 176 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSS----CCS-CCEEECCCSSSCCCCEEEECSSC-----------------
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECC----CCC-ceeEEEccCCCCCEEEEEEeCCC-----------------
Confidence 3467777765 2356666677877665221 111 11111223456789999987521
Q ss_pred CCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEE
Q 044070 695 VPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLL 774 (903)
Q Consensus 695 ~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~ 774 (903)
..+|+.|.+|++|+||++.... +..+... ... .....++.+. -+..+|..|..||.+.
T Consensus 177 ----------~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~--------~~~--~~~~~~~~~~-~~~~~l~~g~~dg~i~ 234 (435)
T 4e54_B 177 ----------TNQFYASSMEGTTRLQDFKGNI-LRVFASS--------DTI--NIWFCSLDVS-ASSRMVVTGDNVGNVI 234 (435)
T ss_dssp ----------TTEEEEECSSSCEEEEETTSCE-EEEEECC--------SSC--SCCCCCEEEE-TTTTEEEEECSSSBEE
T ss_pred ----------CCEEEEEeCCCEEEEeeccCCc-eeEEecc--------CCC--CccEEEEEEC-CCCCEEEEEeCCCcEe
Confidence 4588899999999999986432 2221100 000 0011233332 2457899999999999
Q ss_pred EEEec
Q 044070 775 RFEWP 779 (903)
Q Consensus 775 ~~~~~ 779 (903)
.|.++
T Consensus 235 ~wd~~ 239 (435)
T 4e54_B 235 LLNMD 239 (435)
T ss_dssp EEESS
T ss_pred eeccC
Confidence 98875
No 87
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=84.93 E-value=91 Score=39.27 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=40.0
Q ss_pred ccEEEEEeCCCcEEEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEee
Q 044070 112 KDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLS 182 (903)
Q Consensus 112 ~D~Llv~tds~~l~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~ 182 (903)
..+|+.+.+++.+.+ ||..+.+... .+.. . ...-.-++.+|+++.++.+..++.+.|+-+.
T Consensus 627 ~~~l~s~~~d~~i~v--w~~~~~~~~~----~~~~--h--~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 627 GQRIASCGADKTLQV--FKAETGEKLL----DIKA--H--EDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SSEEEEEETTSCEEE--EETTTCCEEE----EECC--C--SSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCeEEE--EECCCCCEEE----Eecc--C--CCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 468888888887655 5655554322 1211 0 1112357899999999999998988887654
No 88
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=84.73 E-value=44 Score=35.47 Aligned_cols=257 Identities=10% Similarity=0.030 Sum_probs=117.8
Q ss_pred eEEEEEeeCCeEEEEEeCCceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCC
Q 044070 439 FLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIY 518 (903)
Q Consensus 439 ~lFvgS~~gds~L~~~~~~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~ 518 (903)
++|+.+ ..|+.+..++-+.-+.+..+..-+.+..+++.. +...|+++++ .+|.|+++.-.= -+.+..+. ..
T Consensus 3 ~l~vs~-~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~----dg~~l~~~~~--~d~~i~v~d~~~-~~~~~~~~-~~ 73 (391)
T 1l0q_A 3 FAYIAN-SESDNISVIDVTSNKVTATIPVGSNPMGAVISP----DGTKVYVANA--HSNDVSIIDTAT-NNVIATVP-AG 73 (391)
T ss_dssp EEEEEE-TTTTEEEEEETTTTEEEEEEECSSSEEEEEECT----TSSEEEEEEG--GGTEEEEEETTT-TEEEEEEE-CS
T ss_pred EEEEEc-CCCCEEEEEECCCCeEEEEeecCCCcceEEECC----CCCEEEEECC--CCCeEEEEECCC-CeEEEEEE-CC
Confidence 444443 445666666543335556666656666666533 2234544442 357888776321 12222222 11
Q ss_pred CCccEEEEeeecCCCCcceEEEEEecC-ce-EEEEeCC-c-cccccC-----cCCccCCCCeEEEEeeCCCeEEEEEcCc
Q 044070 519 QGITGTWTVRMKVSDPYHSFLVLSFVE-ET-RVLRVGL-N-FTDVTD-----SVGFRPDVCTLACGLVADGLLVQIHQNA 589 (903)
Q Consensus 519 ~~v~~iWtl~~~~~~~~~~~LvlS~~~-~T-~vl~~~~-~-~~e~~~-----~~~f~~~~~Tl~a~~~~~~~ivQVT~~~ 589 (903)
. .+..+... ....+|+++-.. .+ .++.+.. . +..+.. ...|..+.+.|++..-. ...
T Consensus 74 ~---~v~~~~~s---pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--------~~~ 139 (391)
T 1l0q_A 74 S---SPQGVAVS---PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG--------DKT 139 (391)
T ss_dssp S---SEEEEEEC---TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT--------TTE
T ss_pred C---CccceEEC---CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCC--------CCE
Confidence 1 44444443 224566655433 33 2333321 1 111110 01233334444333222 234
Q ss_pred EEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCc
Q 044070 590 VRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSE 667 (903)
Q Consensus 590 irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~e 667 (903)
|++++.... +...... .+..+...+.. +.+++++...+..+++.+. ..+ +.. ........
T Consensus 140 v~~~d~~~~----------~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~---~~~--~~~--~~~~~~~~ 201 (391)
T 1l0q_A 140 VSVINTVTK----------AVINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDT---VTN--SVI--DTVKVEAA 201 (391)
T ss_dssp EEEEETTTT----------EEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEET---TTT--EEE--EEEECSSE
T ss_pred EEEEECCCC----------cEEEEEe-cCCCcceEEECCCCCEEEEEeCCCCEEEEEEC---CCC--eEE--EEEecCCC
Confidence 555654332 1222222 22234444443 4466555444333433222 122 222 23334567
Q ss_pred eeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEe---cCCeEEEEEccCCCCeeEEEeeeeeecccCCC
Q 044070 668 LSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGT---HRPSVEVLSFVPKEGLRVLASGSIVLTNTMGT 744 (903)
Q Consensus 668 iscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~---~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~ 744 (903)
+.++++.+. ..+++++. .++.|.+|++...+.+..+ .. .
T Consensus 202 ~~~~~~~~~----------------------------g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~-----~~-----~ 243 (391)
T 1l0q_A 202 PSGIAVNPE----------------------------GTKAYVTNVDKYFNTVSMIDTGTNKITARI-----PV-----G 243 (391)
T ss_dssp EEEEEECTT----------------------------SSEEEEEEECSSCCEEEEEETTTTEEEEEE-----EC-----C
T ss_pred ccceEECCC----------------------------CCEEEEEecCcCCCcEEEEECCCCeEEEEE-----ec-----C
Confidence 788877652 34666676 5899999998754432211 10 1
Q ss_pred CCCCCCcceeEEeecCccEE-EEEecCCcEEEEEec
Q 044070 745 AISGCIPQDVRLVLADQFYV-LAGLRNGMLLRFEWP 779 (903)
Q Consensus 745 ~~s~~~p~si~l~~~~~~~L-~vgl~~G~l~~~~~~ 779 (903)
..|.++.+..- ..+| +.+..+|.+..|.+.
T Consensus 244 ----~~~~~~~~s~d-g~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 244 ----PDPAGIAVTPD-GKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ----SSEEEEEECTT-SSEEEEEETTTTEEEEEETT
T ss_pred ----CCccEEEEccC-CCEEEEEcCCCCEEEEEECC
Confidence 12344444333 3445 455778888887764
No 89
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=84.12 E-value=46 Score=35.19 Aligned_cols=117 Identities=8% Similarity=0.023 Sum_probs=69.6
Q ss_pred eeEEEEEec--C-CEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 619 VSISLGAVA--H-NMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 619 ~~I~~As~~--~-~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
..|.+.+.. + .+++.+..++.+.++... .+ +. .........+.++++.+...
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~--~~--~~~~~~~~~~~~~~~~~~~~----------------- 154 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTN----TL--QT--ADVFNFEETVYSHHMSPVST----------------- 154 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETT----TT--EE--EEEEECSSCEEEEEECSSCS-----------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCC----CC--cc--ceeccCCCceeeeEeecCCC-----------------
Confidence 456666654 2 345555446665554322 22 22 23344677788888766421
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEE
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLR 775 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~ 775 (903)
...++++|..|+.|.+|++...+.+..+.. .. ....++.+..-+...|.+|..||.+..
T Consensus 155 --------~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----------~~---~~v~~~~~~~~~~~ll~~~~~dg~i~i 213 (408)
T 4a11_B 155 --------KHCLVAVGTRGPKVQLCDLKSGSCSHILQG----------HR---QEILAVSWSPRYDYILATASADSRVKL 213 (408)
T ss_dssp --------SCCEEEEEESSSSEEEEESSSSCCCEEECC----------CC---SCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred --------CCcEEEEEcCCCeEEEEeCCCcceeeeecC----------CC---CcEEEEEECCCCCcEEEEEcCCCcEEE
Confidence 145899999999999999976554332210 00 011345444444446889999999999
Q ss_pred EEecCC
Q 044070 776 FEWPPD 781 (903)
Q Consensus 776 ~~~~~~ 781 (903)
|.+...
T Consensus 214 ~d~~~~ 219 (408)
T 4a11_B 214 WDVRRA 219 (408)
T ss_dssp EETTCS
T ss_pred EECCCC
Confidence 988643
No 90
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=83.85 E-value=41 Score=34.36 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=41.0
Q ss_pred CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeec-cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccce
Q 044070 628 HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHM-RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGY 706 (903)
Q Consensus 628 ~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~-~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (903)
+..++++..++.+++.... .+ ++...... .....|.|+++.+... ....
T Consensus 182 ~~~l~~~~~~~~~~~~~~~----~~--~~~~~~~~~~h~~~i~~~~~~p~~~------------------------~~~~ 231 (351)
T 3f3f_A 182 PEKLAVSALEQAIIYQRGK----DG--KLHVAAKLPGHKSLIRSISWAPSIG------------------------RWYQ 231 (351)
T ss_dssp CCEEEEEETTEEEEEEECT----TS--CEEEEEECCCCCSCEEEEEECCCSS------------------------CSSE
T ss_pred CcEEEEecCCCcEEEEccC----CC--ceeeeeecCCCCcceeEEEECCCCC------------------------Ccce
Confidence 4566666666655443221 22 23222222 3467899999876310 0026
Q ss_pred EEEEEecCCeEEEEEccCC
Q 044070 707 TFVIGTHRPSVEVLSFVPK 725 (903)
Q Consensus 707 ~l~vg~~d~~v~i~sl~~~ 725 (903)
+++.|..|++|++|.+...
T Consensus 232 ~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEEcCCCeEEEEeCCCC
Confidence 9999999999999998753
No 91
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=83.42 E-value=66 Score=36.41 Aligned_cols=116 Identities=12% Similarity=0.017 Sum_probs=74.2
Q ss_pred eeEEEEEecCCEEEEEEe-CCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCC
Q 044070 619 VSISLGAVAHNMIIVSTS-NPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPA 697 (903)
Q Consensus 619 ~~I~~As~~~~~vvva~~-~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~ 697 (903)
..+.+.+..+.+++++.. ++.+..+... . .++...........|.|+++.+.
T Consensus 447 ~~~~~~~~~~~~l~~~~~~d~~i~~~~~~----~--~~~~~~~~~~~~~~v~~~~~s~~--------------------- 499 (615)
T 1pgu_A 447 SPGSAVSLSQNYVAVGLEEGNTIQVFKLS----D--LEVSFDLKTPLRAKPSYISISPS--------------------- 499 (615)
T ss_dssp SCEEEEEECSSEEEEEETTTSCEEEEETT----E--EEEEEECSSCCSSCEEEEEECTT---------------------
T ss_pred CCceEEEEcCCEEEEeecCCCeEEEEECC----C--ccccccccCCccCceEEEEECCC---------------------
Confidence 356666666778888777 7776655322 1 13322222344678999998762
Q ss_pred CCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec---------CccEEEEEe
Q 044070 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA---------DQFYVLAGL 768 (903)
Q Consensus 698 ~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~---------~~~~L~vgl 768 (903)
..+|++|..|++|++|++...+.+..+ . +... ....++.+... +..+|..|.
T Consensus 500 -------g~~l~~~~~dg~i~iw~~~~~~~~~~~-----~-----~~h~--~~v~~~~~sp~~~~~~~~~~~~~~l~~~~ 560 (615)
T 1pgu_A 500 -------ETYIAAGDVMGKILLYDLQSREVKTSR-----W-----AFRT--SKINAISWKPAEKGANEEEIEEDLVATGS 560 (615)
T ss_dssp -------SSEEEEEETTSCEEEEETTTTEEEECC-----S-----CCCS--SCEEEEEECCCC------CCSCCEEEEEE
T ss_pred -------CCEEEEcCCCCeEEEeeCCCCcceeEe-----e-----cCCC--CceeEEEEcCccccccccccCCCEEEEEc
Confidence 469999999999999999765432111 0 0000 01245655541 467899999
Q ss_pred cCCcEEEEEecC
Q 044070 769 RNGMLLRFEWPP 780 (903)
Q Consensus 769 ~~G~l~~~~~~~ 780 (903)
.||.+..|.+..
T Consensus 561 ~dg~i~iw~~~~ 572 (615)
T 1pgu_A 561 LDTNIFIYSVKR 572 (615)
T ss_dssp TTSCEEEEESSC
T ss_pred CCCcEEEEECCC
Confidence 999999998864
No 92
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=83.30 E-value=21 Score=41.54 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=0.0
Q ss_pred ccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEec--CCeeEEEEEec--CCEEEEEEeCCcE
Q 044070 565 FRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP--EHVSISLGAVA--HNMIIVSTSNPCF 640 (903)
Q Consensus 565 f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~--~~~~I~~As~~--~~~vvva~~~~~i 640 (903)
|..+.+.|++|.- ...|++.+.... ....... ....|.+.+.. +.+++.+..++.+
T Consensus 456 ~spdg~~lasgs~---------D~~v~lwd~~~~-----------~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v 515 (611)
T 1nr0_A 456 LSNDKQFVAVGGQ---------DSKVHVYKLSGA-----------SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV 515 (611)
T ss_dssp ECTTSCEEEEEET---------TSEEEEEEEETT-----------EEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EeCCCCEEEEeCC---------CCeEEEEEccCC-----------ceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCE
Q ss_pred EEEEeEEeccccc-eEEEEeeecc-CCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEE
Q 044070 641 LFILGVRSLSVSH-YEIYEMQHMR-LQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVE 718 (903)
Q Consensus 641 l~~~~~~~~~~g~-~~L~~~~~~~-l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~ 718 (903)
.++... + .++....... ....|.|+++.+. ..+||.|..|++|+
T Consensus 516 ~~w~~~------~~~~~~~~~~~~~H~~~V~~v~fspd----------------------------g~~lasgs~D~~v~ 561 (611)
T 1nr0_A 516 IPYSVA------NNFELAHTNSWTFHTAKVACVSWSPD----------------------------NVRLATGSLDNSVI 561 (611)
T ss_dssp EEEEGG------GTTEESCCCCCCCCSSCEEEEEECTT----------------------------SSEEEEEETTSCEE
T ss_pred EEEEcC------CCCceeeeeeeeecccceeEEEECCC----------------------------CCEEEEEECCCcEE
Q ss_pred EEEccCCCCeeEEEeeee-eecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 719 VLSFVPKEGLRVLASGSI-VLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 719 i~sl~~~~~l~~~s~~~l-~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
||+++..+.........- . ....++.+..-+. |+.|-.||.+..+.+.
T Consensus 562 lW~~~~~~~~~~~~~~~h~~-----------~~v~~v~fs~d~~--l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 562 VWNMNKPSDHPIIIKGAHAM-----------SSVNSVIWLNETT--IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEETTCTTSCCEEETTSSTT-----------SCEEEEEEEETTE--EEEEETTSCEEEEECC
T ss_pred EEECCCcccccchhhccCcc-----------cCeeEEEEcCCCE--EEEecCCCCEEEEecc
No 93
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=82.95 E-value=66 Score=39.52 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=83.8
Q ss_pred CccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec-CCEEEEEEeCCcEEE
Q 044070 564 GFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA-HNMIIVSTSNPCFLF 642 (903)
Q Consensus 564 ~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~-~~~vvva~~~~~il~ 642 (903)
.|..+.+.|++|... ..|++++..... ..... .....|.+.+.. +.+++.+..++.+.+
T Consensus 24 afspdg~~lAsgs~D---------g~I~lw~~~~~~----------~~~~~-~~~~~V~~l~fspg~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 24 AFDFTQNLLAIATVT---------GEVHIYGQQQVE----------VVIKL-EDRSAIKEMRFVKGIYLVVINAKDTVYV 83 (902)
T ss_dssp EEETTTTEEEEEETT---------SEEEEECSTTCE----------EEEEC-SSCCCEEEEEEETTTEEEEEETTCEEEE
T ss_pred EECCCCCEEEEEeCC---------CEEEEEeCCCcE----------EEEEc-CCCCCEEEEEEcCCCEEEEEECcCeEEE
Confidence 455667788887752 245555543221 11111 123346666554 444555445565554
Q ss_pred EEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEc
Q 044070 643 ILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSF 722 (903)
Q Consensus 643 ~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl 722 (903)
.... .+ +.. ........|.|+++.+. ..++++|+.|++|++|++
T Consensus 84 Wd~~----~~--~~~--~~~~~~~~V~~v~~sp~----------------------------g~~l~sgs~dg~V~lwd~ 127 (902)
T 2oaj_A 84 LSLY----SQ--KVL--TTVFVPGKITSIDTDAS----------------------------LDWMLIGLQNGSMIVYDI 127 (902)
T ss_dssp EETT----TC--SEE--EEEECSSCEEEEECCTT----------------------------CSEEEEEETTSCEEEEET
T ss_pred EECC----CC--cEE--EEEcCCCCEEEEEECCC----------------------------CCEEEEEcCCCcEEEEEC
Confidence 4322 22 221 22235578999998763 468999999999999999
Q ss_pred cCCCCeeEEEeeeeeec-ccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 723 VPKEGLRVLASGSIVLT-NTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 723 ~~~~~l~~~s~~~l~~~-~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
+..+. .......+... ..+.+..+ ...++.+...+...|++|..||.+ .|.+.
T Consensus 128 ~~~~~-~~~~i~~~~~~~~~~~~h~~--~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 128 DRDQL-SSFKLDNLQKSSFFPAARLS--PIVSIQWNPRDIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp TTTEE-EEEEECCHHHHHTCSSSCCC--CCCEEEEETTEEEEEEEECSSCEE-EEETT
T ss_pred CCCcc-ccceeccccccccccccCCC--CeEEEEEccCCCCEEEEEeCCCcE-EEECC
Confidence 76442 11111000000 00111111 124666554445679999999999 88765
No 94
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=82.30 E-value=59 Score=35.05 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=30.4
Q ss_pred CCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEe-cCCcEEEEEec
Q 044070 714 RPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGL-RNGMLLRFEWP 779 (903)
Q Consensus 714 d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl-~~G~l~~~~~~ 779 (903)
||.|.+|++...+.+..+ . .. ..|.++.+.. +..+|+++- .||.+..|.++
T Consensus 380 dg~v~~~d~~~~~~~~~~-----~-----~~----~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 380 LGKVYVIDTTTDTVKEFW-----E-----AG----NQPTGLDVSP-DNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CCEEEEEETTTTEEEEEE-----E-----CS----SSEEEEEECT-TSCEEEEEETTTTEEEEEEET
T ss_pred ceEEEEEECCCCcEEEEe-----c-----CC----CCCceEEEcC-CCCEEEEEECCCCeEEEEEec
Confidence 569999998664432211 1 01 1345555443 345666665 59999999876
No 95
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=81.89 E-value=7 Score=41.78 Aligned_cols=118 Identities=10% Similarity=0.047 Sum_probs=63.5
Q ss_pred eeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEE-eeeccCCCceeEEEccCCCCcccCCCCCccccCCCCC
Q 044070 619 VSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYE-MQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSV 695 (903)
Q Consensus 619 ~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~-~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~ 695 (903)
..|.+.+.. +.+++.+..++.+.++... .+. .+.. .........|.|+++.+.
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~----~~~-~~~~~~~~~~~~~~v~~~~~~~~------------------- 111 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQDRNAYVYEKR----PDG-TWKQTLVLLRLNRAATFVRWSPN------------------- 111 (377)
T ss_dssp SCEEEEEECTTTCCEEEEETTSSEEEC-----------CCCCEEECCCCSSCEEEEECCTT-------------------
T ss_pred ceEEEEEEeCCCCEEEEEeCCCeEEEEEcC----CCC-ceeeeeEecccCCceEEEEECCC-------------------
Confidence 346666555 3456666566776654322 110 0111 122345678999988762
Q ss_pred CCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEE
Q 044070 696 PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLR 775 (903)
Q Consensus 696 ~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~ 775 (903)
..++++|..|++|++|.+...+..... ..+. +... ....++.+.. +..+|..|..||.+..
T Consensus 112 ---------~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~-----~~h~--~~v~~~~~~~-~~~~l~~~~~d~~i~i 172 (377)
T 3dwl_C 112 ---------EDKFAVGSGARVISVCYFEQENDWWVS--KHLK-----RPLR--STILSLDWHP-NNVLLAAGCADRKAYV 172 (377)
T ss_dssp ---------SSCCEEEESSSCEEECCC-----CCCC--EEEC-----SSCC--SCEEEEEECT-TSSEEEEEESSSCEEE
T ss_pred ---------CCEEEEEecCCeEEEEEECCcccceee--eEee-----cccC--CCeEEEEEcC-CCCEEEEEeCCCEEEE
Confidence 457889999999999998764421111 0110 0000 0113443332 3568999999999999
Q ss_pred EEec
Q 044070 776 FEWP 779 (903)
Q Consensus 776 ~~~~ 779 (903)
|.+.
T Consensus 173 wd~~ 176 (377)
T 3dwl_C 173 LSAY 176 (377)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9985
No 96
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=81.48 E-value=9.7 Score=47.06 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=65.2
Q ss_pred eEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCC
Q 044070 620 SISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPA 697 (903)
Q Consensus 620 ~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~ 697 (903)
.|.+.+.. +.+++.+..+|.|.++... . .+.. ........|.++++.+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~----~--~~~~--~~~~~~~~V~~l~fsp---------------------- 68 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQ----Q--VEVV--IKLEDRSAIKEMRFVK---------------------- 68 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECST----T--CEEE--EECSSCCCEEEEEEET----------------------
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCC----C--cEEE--EEcCCCCCEEEEEEcC----------------------
Confidence 35555544 4466666667766655221 1 1221 2223356789998865
Q ss_pred CCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEE
Q 044070 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFE 777 (903)
Q Consensus 698 ~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~ 777 (903)
..+|+.|..|++|+||++...+.+..+. . .. ...++.+. -+..+|++|..||.+..|.
T Consensus 69 -------g~~L~S~s~D~~v~lWd~~~~~~~~~~~-----~----~~-----~V~~v~~s-p~g~~l~sgs~dg~V~lwd 126 (902)
T 2oaj_A 69 -------GIYLVVINAKDTVYVLSLYSQKVLTTVF-----V----PG-----KITSIDTD-ASLDWMLIGLQNGSMIVYD 126 (902)
T ss_dssp -------TTEEEEEETTCEEEEEETTTCSEEEEEE-----C----SS-----CEEEEECC-TTCSEEEEEETTSCEEEEE
T ss_pred -------CCEEEEEECcCeEEEEECCCCcEEEEEc-----C----CC-----CEEEEEEC-CCCCEEEEEcCCCcEEEEE
Confidence 2388899999999999997655433221 0 00 11233222 1467899999999999888
Q ss_pred ec
Q 044070 778 WP 779 (903)
Q Consensus 778 ~~ 779 (903)
++
T Consensus 127 ~~ 128 (902)
T 2oaj_A 127 ID 128 (902)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 97
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=81.47 E-value=57 Score=34.36 Aligned_cols=285 Identities=11% Similarity=0.110 Sum_probs=133.5
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEEC-CCeEEEEEeeCCeEEEEEeCCceEEeeeecc-c
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVE-GRFLSAFVEMGDGMVLKEENGRLVYTSPIQN-I 468 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~-~~~lFvgS~~gds~L~~~~~~~~~~~~~l~N-~ 468 (903)
+..+.-+..||.+..-.+... ..........+......++..-. +.+|+.||.-|.-.+|.+..+..+.+..+.. -
T Consensus 28 g~~las~~~D~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~ 105 (345)
T 3fm0_A 28 GTLLASCGGDRRIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE 105 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETT--EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS
T ss_pred CCEEEEEcCCCeEEEEEcCCC--cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC
Confidence 455777889999887766532 11111000011122334454443 5678888887777888877655566666654 4
Q ss_pred ccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEec--cCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCc
Q 044070 469 APILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS--GISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEE 546 (903)
Q Consensus 469 gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~--gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~ 546 (903)
++|.+++.... .+++++++ .+|.+++..- +-..+.+..+. ..-..+..+.... ...+|+....+.
T Consensus 106 ~~v~~v~~sp~-----~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~~p---~~~~l~s~s~d~ 172 (345)
T 3fm0_A 106 NEVKSVAWAPS-----GNLLATCS--RDKSVWVWEVDEEDEYECVSVLN---SHTQDVKHVVWHP---SQELLASASYDD 172 (345)
T ss_dssp SCEEEEEECTT-----SSEEEEEE--TTSCEEEEEECTTSCEEEEEEEC---CCCSCEEEEEECS---SSSCEEEEETTS
T ss_pred CCceEEEEeCC-----CCEEEEEE--CCCeEEEEECCCCCCeEEEEEec---CcCCCeEEEEECC---CCCEEEEEeCCC
Confidence 68888876431 23444433 4677877643 22222222221 1123344444432 234566555554
Q ss_pred e-EEEEeCCc-cc---cccC------cCCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCC-----CCe
Q 044070 547 T-RVLRVGLN-FT---DVTD------SVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLS-----YPV 610 (903)
Q Consensus 547 T-~vl~~~~~-~~---e~~~------~~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~-----~~~ 610 (903)
+ .++.+... .. .+.. ...|..+.+.|+.|.. + ..|++.+.........+... ...
T Consensus 173 ~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~-D--------~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD-D--------RTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET-T--------SCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC-C--------CeEEEeccccCCCCccceeeccCCccce
Confidence 4 35554321 11 1110 1134445555655543 2 23444432100000000000 000
Q ss_pred eeeEec-CCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccc--cceEEEEeeeccCCCceeEEEccCCCCcccCCCC
Q 044070 611 CTSWFP-EHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSV--SHYEIYEMQHMRLQSELSCISIPQKHPERRKSSS 685 (903)
Q Consensus 611 ~~~w~~-~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~--g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~ 685 (903)
...... ....|.+.+.. +..++.+..++.+-++........ ....+...........|.|++..+..
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~-------- 315 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE-------- 315 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS--------
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC--------
Confidence 111111 22345544443 345565556666655532210000 00111111112346789999987631
Q ss_pred CccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCC
Q 044070 686 PISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKE 726 (903)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~ 726 (903)
..+||.|..|++|++|.+...+
T Consensus 316 -------------------~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 316 -------------------PGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp -------------------TTEEEEEETTSCEEEEEECC--
T ss_pred -------------------ceEEEEcCCCCcEEEEEecCCC
Confidence 2489999999999999987654
No 98
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=81.06 E-value=57 Score=34.10 Aligned_cols=275 Identities=8% Similarity=0.002 Sum_probs=126.2
Q ss_pred CCeEEEEEeeCCeEEEEEeCCceEEeeeec---ccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEecc------Cc
Q 044070 437 GRFLSAFVEMGDGMVLKEENGRLVYTSPIQ---NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSG------IS 507 (903)
Q Consensus 437 ~~~lFvgS~~gds~L~~~~~~~~~~~~~l~---N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~g------i~ 507 (903)
.++|..|+.-|.=.+|.+..+.......+. .-++|.+++.... .+++++++ .+|.+++.... ..
T Consensus 24 ~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-----~~~las~s--~D~~v~iw~~~~~~~~~~~ 96 (330)
T 2hes_X 24 QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-----TSLLAAGS--FDSTVSIWAKEESADRTFE 96 (330)
T ss_dssp TTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-----SSEEEEEE--TTSCEEEEEC-------CC
T ss_pred CCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-----CCEEEEEe--CCCcEEEEEcccCcCcccc
Confidence 346666666565566665543344445442 4567887776431 23444443 46888887531 11
Q ss_pred eeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCce-EEEEeCCc---ccc---ccC------cCCccCCCCeEEE
Q 044070 508 LEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEET-RVLRVGLN---FTD---VTD------SVGFRPDVCTLAC 574 (903)
Q Consensus 508 ~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T-~vl~~~~~---~~e---~~~------~~~f~~~~~Tl~a 574 (903)
.+.+..+. ..-..++.+.... ...||+..-.+.+ +++.+... .+. +.. ...|..+...|+.
T Consensus 97 ~~~~~~~~---~h~~~V~~v~~sp---~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 170 (330)
T 2hes_X 97 MDLLAIIE---GHENEVKGVAWSN---DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLAS 170 (330)
T ss_dssp CEEEEEEC-------CEEEEEECT---TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred ceeEEEEc---CCCCcEEEEEECC---CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEE
Confidence 22222221 1223466666543 2457776655555 46666321 111 111 0123344455555
Q ss_pred EeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEecCC----EEEEEEeCCcEEEEEeEEecc
Q 044070 575 GLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHN----MIIVSTSNPCFLFILGVRSLS 650 (903)
Q Consensus 575 ~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~~~----~vvva~~~~~il~~~~~~~~~ 650 (903)
|... ..|++.+..... .............|.+++...+ +++.+..++.+.+........
T Consensus 171 ~s~D---------~~i~iW~~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 171 SSYD---------DTVRIWKDYDDD--------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp EETT---------SCEEEEEEETTE--------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred EcCC---------CeEEEEECCCCC--------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 5432 234444321110 0012222222234555555432 344445566666553321100
Q ss_pred ccceEEEEeeec--cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCe
Q 044070 651 VSHYEIYEMQHM--RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGL 728 (903)
Q Consensus 651 ~g~~~L~~~~~~--~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l 728 (903)
.+.......... .....|.+++..+ ..+++.|..|++|+||.....+ .
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~-----------------------------~~~l~s~~~dg~v~iw~~~~~~-~ 283 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWGF-----------------------------NGLIASVGADGVLAVYEEVDGE-W 283 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEECT-----------------------------TSCEEEEETTSCEEEEEEETTE-E
T ss_pred cccceeEEeeecccccccceEEEEEcC-----------------------------CCEEEEEeCCCEEEEEEcCCCc-e
Confidence 111111111111 2456788887753 2378889999999999976432 1
Q ss_pred eEEEeeeeeecccCCCCCCCCCcceeEEeec-CccEEEEEecCCcEEEEEec
Q 044070 729 RVLASGSIVLTNTMGTAISGCIPQDVRLVLA-DQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 729 ~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~-~~~~L~vgl~~G~l~~~~~~ 779 (903)
+.+... . .+.. . ....++.+... +..+|..|-.||.+..|.+.
T Consensus 284 ~~~~~~-~-----~~h~-~-~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 284 KVFAKR-A-----LCHG-V-YEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEEEEE-S-----CTTT-T-SCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EEEecc-c-----cccc-c-ceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 111110 0 0110 0 01134444433 35678889999999888765
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=80.90 E-value=42 Score=36.29 Aligned_cols=69 Identities=4% Similarity=0.003 Sum_probs=39.3
Q ss_pred ceEEEEEecCCeEEEEEccCC-CCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPK-EGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~-~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
..+++.| .|++|++|.+... ..+..+.... ..+.... ....++.+..-+..+|+.|..||.+..|.+..
T Consensus 189 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~--~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 189 YETYLSA-DDLRINLWHLEITDRSFNIVDIKP----ANMEELT--EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp SSEEEEE-CSSEEEEEETTEEEEEEEEEECCC----SSGGGCC--CCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCEEEEe-CCCeEEEEECCCCCceeeeeeccc----ccccccC--cceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 4578888 8999999998632 2221111000 0011100 01134444433447899999999999998764
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=80.70 E-value=62 Score=34.31 Aligned_cols=128 Identities=7% Similarity=0.038 Sum_probs=68.6
Q ss_pred CeeEEEEEec--CCEEEEEEeCCc-EEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCC
Q 044070 618 HVSISLGAVA--HNMIIVSTSNPC-FLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSS 694 (903)
Q Consensus 618 ~~~I~~As~~--~~~vvva~~~~~-il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~ 694 (903)
...|.+.+.+ +.+++-+..++. +.+.... ++. .+.....-.....|.|+++.+.
T Consensus 195 ~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~----~~~-~~~~~~~g~h~~~v~~~~~s~~------------------ 251 (355)
T 3vu4_A 195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE----DGV-LVREFRRGLDRADVVDMKWSTD------------------ 251 (355)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCSEEEEEETT----TCC-EEEEEECTTCCSCEEEEEECTT------------------
T ss_pred CCceEEEEECCCCCEEEEEeCCCCEEEEEECC----CCc-EEEEEEcCCCCCcEEEEEECCC------------------
Confidence 3457777665 445666666676 5444221 221 2222211115678999998763
Q ss_pred CCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecc-----------cCCCCCCCCCcceeEEeecCccE
Q 044070 695 VPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTN-----------TMGTAISGCIPQDVRLVLADQFY 763 (903)
Q Consensus 695 ~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~-----------~~~~~~s~~~p~si~l~~~~~~~ 763 (903)
..+|+.|..|++|+||++.....-.......+.... .+... ...+...+...-+..+
T Consensus 252 ----------~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~d~~~ 319 (355)
T 3vu4_A 252 ----------GSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD--KHVRGCKIAWISESSL 319 (355)
T ss_dssp ----------SCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC--TTCCCCEEEESSSSEE
T ss_pred ----------CCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC--CCCCceEEEEeCCCCE
Confidence 468999999999999999754311100000000000 00000 0011122222224678
Q ss_pred EEEEecCCcEEEEEecC
Q 044070 764 VLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 764 L~vgl~~G~l~~~~~~~ 780 (903)
|++|..||.+..|.+..
T Consensus 320 l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 320 VVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEEETTTTEEEEEEEEE
T ss_pred EEEEeCCCeEEEEEEEc
Confidence 99999999999999864
No 101
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=80.30 E-value=16 Score=38.57 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=40.8
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
..+++.|..|++|++|++...+.+.... . .... ...++.+.. +..+|..|..||.+..|.+..
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~----~~~~-----~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDSQYIVHS---A----KSDV-----EYSSGVLHK-DSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSCEEEEEC---C----CSSC-----CCCEEEECT-TSCEEEEECTTSCEEEEESSC
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEe---c----CCCC-----ceEEEEECC-CCCEEEEEcCCCEEEEEECCC
Confidence 4688999999999999997655321110 0 0000 113443332 456788999999999998764
No 102
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=80.23 E-value=67 Score=34.36 Aligned_cols=106 Identities=5% Similarity=-0.065 Sum_probs=62.3
Q ss_pred CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceE
Q 044070 628 HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYT 707 (903)
Q Consensus 628 ~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (903)
+.+++.+..++.+.++... .+ +............|.|+++.+.. ..+
T Consensus 259 ~~~l~~~~~dg~i~i~d~~----~~--~~~~~~~~~~~~~v~~~~~~~~~---------------------------~~~ 305 (420)
T 3vl1_A 259 GKYVIAGHVSGVITVHNVF----SK--EQTIQLPSKFTCSCNSLTVDGNN---------------------------ANY 305 (420)
T ss_dssp TEEEEEEETTSCEEEEETT----TC--CEEEEECCTTSSCEEEEEECSSC---------------------------TTE
T ss_pred CCEEEEEcCCCeEEEEECC----CC--ceeEEcccccCCCceeEEEeCCC---------------------------CCE
Confidence 4456666666766554322 22 22222222345778999886621 238
Q ss_pred EEEEecCCeEEEEEccCCCC-eeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 708 FVIGTHRPSVEVLSFVPKEG-LRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 708 l~vg~~d~~v~i~sl~~~~~-l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
+++|..|+.|++|++...+. +..+.. .. +. ....+ ... ...+|+.|-.||.+..|.+..
T Consensus 306 l~~g~~dg~i~vwd~~~~~~~~~~~~~----------~~-~~-~v~~~-~~~-~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 306 IYAGYENGMLAQWDLRSPECPVGEFLI----------NE-GT-PINNV-YFA-AGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEEEETTSEEEEEETTCTTSCSEEEEE----------ST-TS-CEEEE-EEE-TTEEEEEETTTEEEEEEEECC
T ss_pred EEEEeCCCeEEEEEcCCCcCchhhhhc----------cC-CC-CceEE-EeC-CCCEEEEecCCccEEEEeccC
Confidence 99999999999999976543 222211 00 00 11222 222 455889999999999999864
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=78.78 E-value=34 Score=35.66 Aligned_cols=119 Identities=8% Similarity=-0.014 Sum_probs=67.4
Q ss_pred eEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCC
Q 044070 620 SISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPA 697 (903)
Q Consensus 620 ~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~ 697 (903)
.|.+++.. +.+++.+..++.+.++... .+...+.. .-......|.|+++.+..
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~----~~~~~~~~-~l~gH~~~V~~v~~~~~~-------------------- 69 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVR----NGGQILIA-DLRGHEGPVWQVAWAHPM-------------------- 69 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEE----TTEEEEEE-EEECCSSCEEEEEECCGG--------------------
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEec----CCCcEEEE-EEcCCCccEEEEEeCCCC--------------------
Confidence 46555554 4555555556666555332 22111111 112346789999885421
Q ss_pred CCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecC-ccEEEEEecCCcEEEE
Q 044070 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLAD-QFYVLAGLRNGMLLRF 776 (903)
Q Consensus 698 ~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~-~~~L~vgl~~G~l~~~ 776 (903)
...+|+.|.+|++|+||.+...+. .... .+. +.. + ...++.+..-+ ..+|..|-.||.+..|
T Consensus 70 ------~~~~l~s~s~D~~v~iWd~~~~~~-~~~~--~~~-----~h~-~--~V~~v~~~p~~~g~~lasgs~D~~i~lw 132 (316)
T 3bg1_A 70 ------YGNILASCSYDRKVIIWREENGTW-EKSH--EHA-----GHD-S--SVNSVCWAPHDYGLILACGSSDGAISLL 132 (316)
T ss_dssp ------GSSCEEEEETTSCEEEECCSSSCC-CEEE--EEC-----CCS-S--CCCEEEECCTTTCSCEEEECSSSCEEEE
T ss_pred ------CCCEEEEEECCCEEEEEECCCCcc-eEEE--Ecc-----CCC-C--ceEEEEECCCCCCcEEEEEcCCCCEEEE
Confidence 135888999999999999865331 1111 110 010 0 12466555432 5679999999999998
Q ss_pred EecC
Q 044070 777 EWPP 780 (903)
Q Consensus 777 ~~~~ 780 (903)
.+..
T Consensus 133 d~~~ 136 (316)
T 3bg1_A 133 TYTG 136 (316)
T ss_dssp EECS
T ss_pred ecCC
Confidence 8753
No 104
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=78.72 E-value=27 Score=37.57 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=40.8
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..++++|..|++|++|++...+.+..+. .+ ..+.. ..+ .++.+.. +..+|..|-.||.+..|.+.
T Consensus 310 g~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~-----~~~h~-~~v-~~l~~s~-dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 310 GRLLFAGYSNGDCYVWDTLLAEMVLNLG--TL-----QNSHE-GRI-SCLGLSS-DGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SSEEEEECTTSCEEEEETTTCCEEEEEC--CS-----CSSCC-CCC-CEEEECS-SSSEEEEECTTSCEEEEECC
T ss_pred CCEEEEEECCCCEEEEECCCCceEEEEe--cc-----cCCCC-Cce-EEEEECC-CCCEEEEeeCCCCEEEEecC
Confidence 4689999999999999986554332221 00 00100 012 3443332 45689999999999999875
No 105
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=78.68 E-value=1.1e+02 Score=35.86 Aligned_cols=278 Identities=11% Similarity=0.084 Sum_probs=126.1
Q ss_pred CeEEEEEeeCCeEEEEEeCCc--e-EEeeeec-ccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEee
Q 044070 438 RFLSAFVEMGDGMVLKEENGR--L-VYTSPIQ-NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLR 513 (903)
Q Consensus 438 ~~lFvgS~~gds~L~~~~~~~--~-~~~~~l~-N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~ 513 (903)
++|+.||.-|.=.+|.+..+. . .....+. .-++|.++++.. + .++++++| .+|.+++..-.-+.. ...
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~----~-g~~l~sgs--~Dg~v~vwd~~~~~~-~~~ 467 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS----D-GQFALSGS--WDGELRLWDLAAGVS-TRR 467 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT----T-SSEEEEEE--TTSEEEEEETTTTEE-EEE
T ss_pred CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC----C-CCEEEEEe--CCCcEEEEECCCCcc-eeE
Confidence 567777766655566554321 1 1122332 346777777643 1 23344333 478888875432221 111
Q ss_pred cCCCCCCccEEEEeeecCCCCcceEEEEEecCceE-EEEeCCc-cccccCcCCccCCCCeEEEEeeC-CC---eEEEEE-
Q 044070 514 TAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETR-VLRVGLN-FTDVTDSVGFRPDVCTLACGLVA-DG---LLVQIH- 586 (903)
Q Consensus 514 ~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~-vl~~~~~-~~e~~~~~~f~~~~~Tl~a~~~~-~~---~ivQVT- 586 (903)
+. ..-..++.+.... ...+|+.+-.+.|. ++.+... ...+.. ........+.+-.+. ++ .++-..
T Consensus 468 ~~---~h~~~v~~~~~s~---~~~~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 468 FV---GHTKDVLSVAFSL---DNRQIVSASRDRTIKLWNTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp EE---CCSSCEEEEEECT---TSSCEEEEETTSCEEEECTTSCEEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred Ee---CCCCCEEEEEEeC---CCCEEEEEeCCCEEEEEECCCCcceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 21 1223456665542 23456655555554 5543211 001100 000001112222221 11 122111
Q ss_pred cCcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccC
Q 044070 587 QNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRL 664 (903)
Q Consensus 587 ~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l 664 (903)
...|++.+.... ............|.+.+.. +.+++.+..++.+.+.... ++ + .......
T Consensus 540 d~~v~vwd~~~~----------~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~----~~--~--~~~~~~~ 601 (694)
T 3dm0_A 540 DKTVKVWNLSNC----------KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA----EG--K--KLYSLEA 601 (694)
T ss_dssp TSCEEEEETTTC----------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT----TT--E--EEECCBC
T ss_pred CCeEEEEECCCC----------cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----CC--c--eEEEecC
Confidence 345677765432 1233333333457666665 4455555566776655322 22 2 2233444
Q ss_pred CCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecc---c
Q 044070 665 QSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTN---T 741 (903)
Q Consensus 665 ~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~---~ 741 (903)
...|.++++.+. ..+++++ .++.|+||++...+.+..+......... .
T Consensus 602 ~~~v~~~~~sp~----------------------------~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 652 (694)
T 3dm0_A 602 NSVIHALCFSPN----------------------------RYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADN 652 (694)
T ss_dssp SSCEEEEEECSS----------------------------SSEEEEE-ETTEEEEEETTTTEEEEEECCCCC--------
T ss_pred CCcEEEEEEcCC----------------------------CcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccc
Confidence 667888888652 3466554 5677999999765543322110000000 0
Q ss_pred CCCC--CCCCC-cceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 742 MGTA--ISGCI-PQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 742 ~~~~--~s~~~-p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
.+.. ....+ ..++.+. -+..+|+.|-.||.+..|.+.
T Consensus 653 ~~~~~~~~~~~~~~~l~~s-pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 653 SGPAATKRKVIYCTSLNWS-ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --------CCCCEEEEEEC-TTSSEEEEEETTSEEEEEEC-
T ss_pred cccccCCceeEEeeeEEEc-CCCCEEEEEcCCCeEEEEecc
Confidence 0000 00000 0122211 146789999999999988764
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=78.59 E-value=75 Score=34.62 Aligned_cols=66 Identities=5% Similarity=-0.005 Sum_probs=42.8
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
..++++|..|++|++|.+........+.. +. ... ..+.++.+...+...|++|-.||.+..|.+..
T Consensus 244 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~--~~-----~~~---~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHT--VD-----AHT---AEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp TTEEEEEETTSEEEEEETTCSCSSSCSEE--EE-----CCS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCEEEEEeCCCeEEEEECCCCCCCcceeE--ee-----cCC---CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 46888999999999999976531111110 00 000 12356666555566788999999999998764
No 107
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=78.34 E-value=30 Score=37.17 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=65.4
Q ss_pred eEEEEEec---CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCC
Q 044070 620 SISLGAVA---HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVP 696 (903)
Q Consensus 620 ~I~~As~~---~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~ 696 (903)
.|.+.+.+ ++.++.+..++.+.++... ..+ ..+.. -......|.|+++.+.
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~---~~~-~~~~~--~~~h~~~v~~v~~~p~-------------------- 260 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLR---ITS-RAVRT--YHGHEGDINSVKFFPD-------------------- 260 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETT---TTC-CCCEE--ECCCSSCCCEEEECTT--------------------
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECC---CCC-cceEE--ECCcCCCeEEEEEecC--------------------
Confidence 45555553 3444555556666554221 011 01111 1234567889988762
Q ss_pred CCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEE
Q 044070 697 ALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRF 776 (903)
Q Consensus 697 ~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~ 776 (903)
..+++.|..|++|+||.+...+.+....... ...... .....++.+.. ...+|++|..||.+..|
T Consensus 261 --------~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~----~~~~~~--~~~v~~~~~s~-~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 261 --------GQRFGTGSDDGTCRLFDMRTGHQLQVYNREP----DRNDNE--LPIVTSVAFSI-SGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp --------SSEEEEECSSSCEEEEETTTTEEEEEECCCC----SSSCCS--SCSCSEEEECS-SSSEEEEECTTSCEEEE
T ss_pred --------CCeEEEEcCCCeEEEEECCCCcEEEEecccc----cccccc--cCceEEEEECC-CCCEEEEEECCCCEEEE
Confidence 4689999999999999987654333221100 000000 00113443332 46789999999999988
Q ss_pred Eec
Q 044070 777 EWP 779 (903)
Q Consensus 777 ~~~ 779 (903)
...
T Consensus 326 d~~ 328 (380)
T 3iz6_a 326 DTL 328 (380)
T ss_dssp ETT
T ss_pred ECC
Confidence 754
No 108
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=78.33 E-value=59 Score=34.20 Aligned_cols=112 Identities=9% Similarity=0.070 Sum_probs=68.1
Q ss_pred CCcCeEEEEc--CCEEEEEEecCCCcEEEEEEEEeccc-eeEeeeeeccccccccCCCCCCccEEEEEeCC--CcEEEEE
Q 044070 54 PTSNDVVFGK--ETSIELVIIGEDGIVQSVCEQAVFGT-IKDLAVVPWNKKFNAQNSQVMGKDLLVVISDS--GKLSFLA 128 (903)
Q Consensus 54 ~~~~~LVv~k--~~~LeIy~~~~~g~L~~v~~~~lfg~-I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds--~~l~iL~ 128 (903)
++.+.|+++. .+.|.+|.+. +|+++.+........ -.....+.+ .|. ..+|+++... +.+.+..
T Consensus 220 pdg~~l~v~~~~~~~v~v~~~~-~g~~~~~~~~~~~~~~~~~~~~i~~-------spd---g~~l~v~~~~~~~~i~v~~ 288 (361)
T 3scy_A 220 SDGKFAYLINEIGGTVIAFRYA-DGMLDEIQTVAADTVNAQGSGDIHL-------SPD---GKYLYASNRLKADGVAIFK 288 (361)
T ss_dssp TTSSEEEEEETTTCEEEEEEEE-TTEEEEEEEEESCSSCCCCEEEEEE-------CTT---SSEEEEEECSSSCEEEEEE
T ss_pred CCCCEEEEEcCCCCeEEEEEec-CCceEEeEEEecCCCCCCCcccEEE-------CCC---CCEEEEECCCCCCEEEEEE
Confidence 4445565554 7889999986 677776666543321 111122222 132 2466666554 7888888
Q ss_pred EeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEee-ccccEEEEEeec
Q 044070 129 FCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSA-YEDRLGLFSLSM 183 (903)
Q Consensus 129 ~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~-~e~~l~v~pl~~ 183 (903)
++....++..+..... +. ....++++|+++.++++. ..+.+.+|.++.
T Consensus 289 ~~~~~g~~~~~~~~~~---g~----~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 289 VDETNGTLTKVGYQLT---GI----HPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp ECTTTCCEEEEEEEEC---SS----CCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred EcCCCCcEEEeeEecC---CC----CCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 8877666655433332 21 123689999999988887 457788877654
No 109
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=77.28 E-value=5.3 Score=44.24 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=52.5
Q ss_pred cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccC
Q 044070 663 RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTM 742 (903)
Q Consensus 663 ~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~ 742 (903)
..+..|+||+..+.. ..+||+|..||+|+||++...+....+.. .
T Consensus 117 ~~~~~V~~l~~~P~~---------------------------~~~lasGs~dg~i~lWd~~~~~~~~~~~~--------~ 161 (435)
T 4e54_B 117 PFDRRATSLAWHPTH---------------------------PSTVAVGSKGGDIMLWNFGIKDKPTFIKG--------I 161 (435)
T ss_dssp ECSSCEEEEEECSSC---------------------------TTCEEEEETTSCEEEECSSCCSCCEEECC--------C
T ss_pred CCCCCEEEEEEeCCC---------------------------CCEEEEEeCCCEEEEEECCCCCceeEEEc--------c
Confidence 345679999997632 35899999999999999875543221110 0
Q ss_pred CCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 743 GTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 743 ~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
+.. + .+ .++.+.+.+..+|+.|-.||.+..|.+.
T Consensus 162 gH~-~-~V-~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 162 GAG-G-SI-TGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp SSS-C-CC-CEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCC-C-CE-EEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 110 1 12 4666655556788899999999888764
No 110
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=74.74 E-value=79 Score=32.34 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=39.4
Q ss_pred eEEEEEe-cCCeEEEEEccCCC-CeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEe-cCCcEEEEEecCCC
Q 044070 706 YTFVIGT-HRPSVEVLSFVPKE-GLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGL-RNGMLLRFEWPPDS 782 (903)
Q Consensus 706 ~~l~vg~-~d~~v~i~sl~~~~-~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl-~~G~l~~~~~~~~~ 782 (903)
.+++++. .++.|.+|.+.... .++.+.. +. .+. .|..+.+.. +..+|+++- .+|.+..|.++..+
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~--~~----~~~-----~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGF--QP----TET-----QPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEE--EE----CSS-----SCCCEEECT-TSSEEEEECTTTCEEEEEEEETTT
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeee--ec----CCC-----ccceEEECC-CCCEEEEecCCCCeEEEEEEcCCC
Confidence 4566555 59999999997422 2333221 11 011 245665543 345677777 67999999998765
Q ss_pred C
Q 044070 783 N 783 (903)
Q Consensus 783 ~ 783 (903)
|
T Consensus 311 g 311 (343)
T 1ri6_A 311 G 311 (343)
T ss_dssp T
T ss_pred c
Confidence 5
No 111
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=73.55 E-value=89 Score=32.36 Aligned_cols=105 Identities=5% Similarity=-0.018 Sum_probs=51.5
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEEC-CCeEEEEEeeCCeEEEEEeCCceEEeeeec-cc
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVE-GRFLSAFVEMGDGMVLKEENGRLVYTSPIQ-NI 468 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~-~~~lFvgS~~gds~L~~~~~~~~~~~~~l~-N~ 468 (903)
...++-+..||.+..-.+..+.......+....+......++..-. +.+|+.||. |+.+.-++-..-+.+..+. .-
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~--D~~v~~wd~~~~~~~~~~~~h~ 107 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW--DKTLRLWDVATGETYQRFVGHK 107 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEEECCS
T ss_pred ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC--CCEEEEEECCCCCeeEEEccCC
Confidence 3556778899998877776543211111111112222334444443 446666654 4444444322223344443 34
Q ss_pred ccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEec
Q 044070 469 APILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504 (903)
Q Consensus 469 gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~ 504 (903)
++|.++++.. . .+++++++ .+|.+++..-
T Consensus 108 ~~v~~~~~~~----~-~~~l~s~s--~D~~i~vwd~ 136 (319)
T 3frx_A 108 SDVMSVDIDK----K-ASMIISGS--RDKTIKVWTI 136 (319)
T ss_dssp SCEEEEEECT----T-SCEEEEEE--TTSCEEEEET
T ss_pred CcEEEEEEcC----C-CCEEEEEe--CCCeEEEEEC
Confidence 6777776543 1 23333333 4677887753
No 112
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=72.73 E-value=83 Score=33.34 Aligned_cols=116 Identities=15% Similarity=0.104 Sum_probs=67.7
Q ss_pred CCcCeEEEE--cCCEEEEEEecCCCcEEEEEEEEe--cc-ceeEeeeeeccccccccCCCCCCccEEEEEeC-CCcEEEE
Q 044070 54 PTSNDVVFG--KETSIELVIIGEDGIVQSVCEQAV--FG-TIKDLAVVPWNKKFNAQNSQVMGKDLLVVISD-SGKLSFL 127 (903)
Q Consensus 54 ~~~~~LVv~--k~~~LeIy~~~~~g~L~~v~~~~l--fg-~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~td-s~~l~iL 127 (903)
++.+.|+++ +.+.|.+|.++.+|++..+..... .| .++.++ | .|. ..+|+++.+ ++.+.++
T Consensus 154 pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~-~---------spd---g~~l~v~~~~~~~v~v~ 220 (365)
T 1jof_A 154 PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA-M---------HPT---GNYLYALMEAGNRICEY 220 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE-E---------CTT---SSEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE-E---------CCC---CCEEEEEECCCCeEEEE
Confidence 444556665 467999999965788877665542 13 455554 2 132 246666654 6788999
Q ss_pred EEeCCCcceEe-eEEEEecCCCccccc-------CCcEEE-ECCCCCeeEEeeccc------cEEEEEee
Q 044070 128 AFCNEMHRFFP-VAQVHLSNPGNSRHQ-------LGRMLA-VDSSGCLIAVSAYED------RLGLFSLS 182 (903)
Q Consensus 128 ~~d~~~~~f~t-v~~~~~~~~g~~~~~-------~g~~l~-VDP~~R~ial~~~e~------~l~v~pl~ 182 (903)
.+|.++.++.. .........+..... ...-++ ++|+||.+.++.... .+.++-++
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred EEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 99877666542 111111111110000 122578 999999988766543 57777664
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=72.17 E-value=1.1e+02 Score=32.80 Aligned_cols=79 Identities=8% Similarity=-0.033 Sum_probs=41.3
Q ss_pred CeEEEEeCCCCEEEEEEEeCCCccEEE-EceeccCCCCcceEEEECC-CeEEEEEeeCCeEEEEEeCCceEEeeeecccc
Q 044070 392 PKMVFCVDTGEFFMIEIAFGSDGHKVH-LSECLYKGPPCKALLWVEG-RFLSAFVEMGDGMVLKEENGRLVYTSPIQNIA 469 (903)
Q Consensus 392 ~~~LL~~e~G~l~~l~l~~~~~~~~v~-~~~~~~~~~~~ssl~~l~~-~~lFvgS~~gds~L~~~~~~~~~~~~~l~N~g 469 (903)
..++.+..+|.++...+. ... .+. +. .....+.++..-.+ +.+|+++ ..|+.+..++-..-+.+..++.-+
T Consensus 182 ~~~~s~~~d~~v~~~d~~--~~~-~~~~~~---~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~d~~~~~~~~~~~~~~ 254 (433)
T 3bws_A 182 ELWVSQMQANAVHVFDLK--TLA-YKATVD---LTGKWSKILLYDPIRDLVYCSN-WISEDISVIDRKTKLEIRKTDKIG 254 (433)
T ss_dssp EEEEEEGGGTEEEEEETT--TCC-EEEEEE---CSSSSEEEEEEETTTTEEEEEE-TTTTEEEEEETTTTEEEEECCCCS
T ss_pred EEEEEECCCCEEEEEECC--Cce-EEEEEc---CCCCCeeEEEEcCCCCEEEEEe-cCCCcEEEEECCCCcEEEEecCCC
Confidence 344455667888766543 211 111 11 12234455665544 4565554 345566767643345566676666
Q ss_pred cccceEEe
Q 044070 470 PILDMSVV 477 (903)
Q Consensus 470 PI~D~~v~ 477 (903)
.+..+++.
T Consensus 255 ~~~~~~~~ 262 (433)
T 3bws_A 255 LPRGLLLS 262 (433)
T ss_dssp EEEEEEEC
T ss_pred CceEEEEc
Confidence 66666653
No 114
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=72.06 E-value=1.1e+02 Score=32.54 Aligned_cols=58 Identities=7% Similarity=0.089 Sum_probs=35.3
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEE
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFE 777 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~ 777 (903)
...|++++.++.|..|+....+.+. ...+. +.. +..+..+. ...|+++..+|.|+.|+
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~---~~~~~-----~~~----~~~~~~~~---~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVA---QQKVD-----SSG----FQTEPVAA---DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEE---EEECC-----TTC----BCSCCEEE---TTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEE---EEecC-----CCc----ceeCCEEE---CCEEEEEeCCCEEEEEe
Confidence 3578889999999999876655321 11110 110 11122222 45789999999998775
No 115
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=71.67 E-value=92 Score=31.72 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=18.5
Q ss_pred ceEEEEEecCCeEEEEEccCCCCe
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGL 728 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l 728 (903)
..+++++.++++|.+|.+...+.+
T Consensus 291 g~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 291 GSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp SCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCcEEEEECcCCcEE
Confidence 347777888999999998766543
No 116
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=71.20 E-value=1.4e+02 Score=33.52 Aligned_cols=293 Identities=10% Similarity=0.079 Sum_probs=143.1
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCccEEEEceeccCCCCcceEEEECCC-eEEEEEeeCCeEEEEEeCCceEEeeeecc-c
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGR-FLSAFVEMGDGMVLKEENGRLVYTSPIQN-I 468 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~~~v~~~~~~~~~~~~ssl~~l~~~-~lFvgS~~gds~L~~~~~~~~~~~~~l~N-~ 468 (903)
...++.+..+|.+.... .++. .+.. ..+......++.+..++ .+..++. |..+.-++.+ -+.+..+.+ -
T Consensus 233 g~~l~~~~~d~~i~~w~--~~~~--~~~~--~~~~~~~v~~v~~~~d~~~l~~~~~--d~~i~~w~~~-~~~~~~~~~h~ 303 (577)
T 2ymu_A 233 GQTIASASDDKTVKLWN--RNGQ--LLQT--LTGHSSSVNGVAFRPDGQTIASASD--DKTVKLWNRN-GQLLQTLTGHS 303 (577)
T ss_dssp SSCEEEEETTSCEEEEC--TTSC--EEEE--ECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETT-SCEEEEECCCS
T ss_pred CCEEEEEeCCCEEEEEe--CCCC--EEEE--EecCCCCEEEEEEcCCCCEEEEEeC--CCEEEEEeCC-CcEEEEEecCC
Confidence 34566677888775442 2222 1210 01112233445555444 4555554 3344434321 123333432 4
Q ss_pred ccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceE
Q 044070 469 APILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETR 548 (903)
Q Consensus 469 gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~ 548 (903)
++|.++++.. +...|++++ .+|.+++.... ...+..+. ..-..++.+.... ...+|+....+.+.
T Consensus 304 ~~v~~~~~~~----~~~~l~t~~---~d~~i~~w~~~--~~~~~~~~---~~~~~v~~~~~s~---~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 304 SSVWGVAFSP----DGQTIASAS---DDKTVKLWNRN--GQHLQTLT---GHSSSVWGVAFSP---DGQTIASASDDKTV 368 (577)
T ss_dssp SCEEEEEECT----TSSEEEEEE---TTSCEEEEETT--SCEEEEEC---CCSSCEEEEEECT---TSSEEEEEETTSEE
T ss_pred CCeEEEEECC----CCCEEEEEe---CCCeEEEEeCC--CCeeEEEe---CCCCCEEEEEECC---CCCEEEEEeCCCEE
Confidence 5777776543 223344433 46788877532 22232222 2234566666542 24577776666654
Q ss_pred -EEEeCCc-cccccCc------CCccCCCCeEEEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEecCCee
Q 044070 549 -VLRVGLN-FTDVTDS------VGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVS 620 (903)
Q Consensus 549 -vl~~~~~-~~e~~~~------~~f~~~~~Tl~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 620 (903)
++..... +..+... ..|..+.+.|+++.- ...|++.+...+ ...........
T Consensus 369 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~---------d~~v~~~~~~~~-----------~~~~~~~~~~~ 428 (577)
T 2ymu_A 369 KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD---------DKTVKLWNRNGQ-----------LLQTLTGHSSS 428 (577)
T ss_dssp EEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEET---------TSEEEEECTTCC-----------EEEEEECCSSC
T ss_pred EEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeC---------CCEEEEEeCCCC-----------EEEEecCCCCC
Confidence 4433221 1111110 123344444444432 123455553322 23333333345
Q ss_pred EEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCC
Q 044070 621 ISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPAL 698 (903)
Q Consensus 621 I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~ 698 (903)
|.+.+.. +.+++.+..++.+.++.. ++ ++... -.....+|.|+++.+.
T Consensus 429 v~~~~~s~d~~~l~~~~~d~~v~~w~~-----~~--~~~~~-~~~~~~~v~~~~~spd---------------------- 478 (577)
T 2ymu_A 429 VWGVAFSPDDQTIASASDDKTVKLWNR-----NG--QLLQT-LTGHSSSVRGVAFSPD---------------------- 478 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEET-----TS--CEEEE-EECCSSCEEEEEECTT----------------------
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEEC-----CC--CEEEE-EcCCCCCEEEEEEcCC----------------------
Confidence 6666554 446666666666554421 22 22221 1234678999998762
Q ss_pred CCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEe
Q 044070 699 PAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEW 778 (903)
Q Consensus 699 ~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~ 778 (903)
..+||+|+.|++|+||+... +.+..+. +.. + ...++.+.+ +..+|+.|-.||.+..|..
T Consensus 479 ------~~~las~~~d~~i~iw~~~~-~~~~~~~----------~h~-~--~v~~l~~s~-dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 479 ------GQTIASASDDKTVKLWNRNG-QLLQTLT----------GHS-S--SVRGVAFSP-DGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp ------SCEEEEEETTSEEEEEETTS-CEEEEEE----------CCS-S--CEEEEEECT-TSSCEEEEETTSEEEEECT
T ss_pred ------CCEEEEEeCCCEEEEEcCCC-CEEEEEe----------CCC-C--CEEEEEEcC-CCCEEEEEECcCEEEEEeC
Confidence 46899999999999999642 3232221 010 0 113444432 3567899999999887763
No 117
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=65.41 E-value=1.5e+02 Score=31.75 Aligned_cols=87 Identities=8% Similarity=0.064 Sum_probs=48.7
Q ss_pred cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCC----eeEEEeeeeee
Q 044070 663 RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEG----LRVLASGSIVL 738 (903)
Q Consensus 663 ~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~----l~~~s~~~l~~ 738 (903)
.....|.|+++.+.. ..++++|+.|++|++|++...+. +..+....-+.
T Consensus 224 ~~~~~v~~~~~~p~~---------------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 276 (447)
T 3dw8_B 224 ELTEVITAAEFHPNS---------------------------CNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS 276 (447)
T ss_dssp GCCCCEEEEEECSSC---------------------------TTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC----
T ss_pred ccCcceEEEEECCCC---------------------------CcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc
Confidence 446778999887631 26899999999999999976553 22211000000
Q ss_pred -cccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 739 -TNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 739 -~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
....... .. ...++.+.. +..+|+.|.. |.+..|.+..
T Consensus 277 ~~~~~~~~-~~-~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 277 NRSFFSEI-IS-SISDVKFSH-SGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp -CCHHHHH-TT-CEEEEEECT-TSSEEEEEES-SEEEEEETTC
T ss_pred cccccccc-Cc-eEEEEEECC-CCCEEEEeeC-CeEEEEeCCC
Confidence 0000000 00 112333332 4567888888 9999888763
No 118
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=63.57 E-value=1.5e+02 Score=31.03 Aligned_cols=78 Identities=6% Similarity=0.017 Sum_probs=50.4
Q ss_pred cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccC
Q 044070 663 RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTM 742 (903)
Q Consensus 663 ~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~ 742 (903)
.....|.|+++.+. ..+||.|.+|++++||.+...+ .+.+. .+.
T Consensus 59 ~h~~~v~~~~~sp~----------------------------g~~l~s~s~D~~v~iw~~~~~~-~~~~~--~~~----- 102 (345)
T 3fm0_A 59 GHQRTVRKVAWSPC----------------------------GNYLASASFDATTCIWKKNQDD-FECVT--TLE----- 102 (345)
T ss_dssp SCSSCEEEEEECTT----------------------------SSEEEEEETTSCEEEEEECCC--EEEEE--EEC-----
T ss_pred ccCCcEEEEEECCC----------------------------CCEEEEEECCCcEEEEEccCCC-eEEEE--Ecc-----
Confidence 45678999998762 4689999999999999986543 21111 111
Q ss_pred CCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 743 GTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 743 ~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
+... ...++.+.. +..+|..|-.||.+..|.++.
T Consensus 103 -~h~~--~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 103 -GHEN--EVKSVAWAP-SGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp -CCSS--CEEEEEECT-TSSEEEEEETTSCEEEEEECT
T ss_pred -CCCC--CceEEEEeC-CCCEEEEEECCCeEEEEECCC
Confidence 1100 113443332 457899999999999998864
No 119
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=62.33 E-value=1.2e+02 Score=34.59 Aligned_cols=119 Identities=8% Similarity=0.073 Sum_probs=60.7
Q ss_pred cCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccce
Q 044070 627 AHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGY 706 (903)
Q Consensus 627 ~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (903)
.+.+++++..++.+..+... ..+ +..+........+.++++.+.. | .+..
T Consensus 189 dg~~l~v~~~d~~V~v~D~~----~~t--~~~~~~i~~g~~p~~va~sp~~-~-----------------------~dg~ 238 (543)
T 1nir_A 189 SGRYLLVIGRDARIDMIDLW----AKE--PTKVAEIKIGIEARSVESSKFK-G-----------------------YEDR 238 (543)
T ss_dssp TSCEEEEEETTSEEEEEETT----SSS--CEEEEEEECCSEEEEEEECCST-T-----------------------CTTT
T ss_pred CCCEEEEECCCCeEEEEECc----CCC--CcEEEEEecCCCcceEEeCCCc-C-----------------------CCCC
Confidence 35577777666655544220 011 2223444556778888876510 0 0145
Q ss_pred EEEEEe-cCCeEEEEEccCCCCeeEEEeeeeeecccCCCCC--CCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 707 TFVIGT-HRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAI--SGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 707 ~l~vg~-~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~--s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
+++++. ++++|.||.....+.+..+...... ..... ....+.++.+..-+..+++....+|.+..+...
T Consensus 239 ~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~----~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 239 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT----VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp EEEEEEEESSEEEEEETTTCCEEEEEECCEEC----SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred EEEEEEccCCeEEEEeccccccceeecccCcc----cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 777777 5999999988766655444321100 00000 000123444443345555666677877776654
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=60.92 E-value=79 Score=36.75 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=39.5
Q ss_pred ceEEEEEecCCeEEEEEccCCCCe--eEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGL--RVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l--~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
+.+||+|..||+|+||++...... +.+....+. ...++..+ -..++...+ ++ |+++-.|+.+..+.++.
T Consensus 141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~--~~~~gh~~--~V~sVawSP-dg--Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR--LSDAGSKD--WVTHIVWYE-DV--LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE--CSCTTCCC--CEEEEEEET-TE--EEEEETTCCEEEECCCS
T ss_pred CCEEEEEcCCCEEEEEECCCCccccccceeeeeee--cccccccc--cEEEEEEcC-Cc--EEEEeCCCeEEEEECCC
Confidence 569999999999999999875421 111111211 00111100 113444432 23 88888899998887753
No 121
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=58.61 E-value=1.7e+02 Score=30.18 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=40.9
Q ss_pred ceEEEEEe-cCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEe-cCCcEEEEEecCCC
Q 044070 705 GYTFVIGT-HRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGL-RNGMLLRFEWPPDS 782 (903)
Q Consensus 705 ~~~l~vg~-~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl-~~G~l~~~~~~~~~ 782 (903)
..+|+++. .+++|.+|.++....++.+. .+. ..+ ..|..+.+..-+ .+|+++- .+|.+..|.++..+
T Consensus 251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~--~~~----~~~----~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~t 319 (347)
T 3hfq_A 251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQ--QIS----TEG----DFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTS 319 (347)
T ss_dssp SCEEEEEEETTTEEEEEEECGGGCEEEEE--EEE----CSS----SCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTT
T ss_pred CCEEEEEeCCCCEEEEEEECCCCcEEEeE--EEe----cCC----CCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCC
Confidence 34665555 48999999987432233332 111 001 246777665434 4566665 55889999998877
Q ss_pred CC
Q 044070 783 NI 784 (903)
Q Consensus 783 ~~ 784 (903)
|.
T Consensus 320 g~ 321 (347)
T 3hfq_A 320 GK 321 (347)
T ss_dssp CC
T ss_pred Ce
Confidence 64
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=58.50 E-value=66 Score=34.70 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=42.1
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
..+||.|.+|++|+||.+.....+... .. .. ....++.+.+-+..+|..|-.||.+..|.+.
T Consensus 156 ~~~las~s~D~tv~~Wd~~~~~~~~~~--~~--------~~---~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~ 217 (393)
T 4gq1_A 156 EQVIASVGDDCTLIIWRLTDEGPILAG--YP--------LS---SPGISVQFRPSNPNQLIVGERNGNIRIFDWT 217 (393)
T ss_dssp EEEEEEEETTSEEEEEEEETTEEEEEE--EE--------CS---SCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred CCEEEEEECCCeEEEEECCCCceeeee--cC--------CC---CCcEEEEECCCCCceEEecCCCCEEEEEECC
Confidence 679999999999999998754322111 00 10 0124665554456689999999999988865
No 123
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=56.48 E-value=1.9e+02 Score=30.06 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=41.9
Q ss_pred ceEEEEEec--CCeEEEEEccCC-CCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEe-cCCcEEEEEecC
Q 044070 705 GYTFVIGTH--RPSVEVLSFVPK-EGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGL-RNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~--d~~v~i~sl~~~-~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl-~~G~l~~~~~~~ 780 (903)
..+|+++.. +++|.+|.++.. ..+..+.. +. .+ ..|+.+.+..-+ .+|+++- .+|.+..|+++.
T Consensus 270 g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~--~~----~g-----~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 270 GKYLYASNRLKADGVAIFKVDETNGTLTKVGY--QL----TG-----IHPRNFIITPNG-KYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SSEEEEEECSSSCEEEEEEECTTTCCEEEEEE--EE----CS-----SCCCEEEECTTS-CEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE--ec----CC-----CCCceEEECCCC-CEEEEEECCCCCEEEEEEEC
Confidence 346766665 489999999732 22333321 11 01 246777665433 4666666 778999999998
Q ss_pred CCCC
Q 044070 781 DSNI 784 (903)
Q Consensus 781 ~~~~ 784 (903)
.+|.
T Consensus 338 ~~g~ 341 (361)
T 3scy_A 338 ATGL 341 (361)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 7764
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=53.08 E-value=2.5e+02 Score=30.35 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=15.9
Q ss_pred ceEEEEEecCCeEEEEEc
Q 044070 705 GYTFVIGTHRPSVEVLSF 722 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl 722 (903)
..+|+.|.+|++|+||.+
T Consensus 338 G~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 338 DSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCcEEEecC
Confidence 468999999999999975
No 125
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=50.24 E-value=2.3e+02 Score=29.26 Aligned_cols=105 Identities=6% Similarity=-0.020 Sum_probs=50.7
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCCc--cEEEEceeccCCCCcceEEEEC-CCeEEEEEeeCCeEEEEEeCCceEEeeeec-
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSDG--HKVHLSECLYKGPPCKALLWVE-GRFLSAFVEMGDGMVLKEENGRLVYTSPIQ- 466 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~~--~~v~~~~~~~~~~~~ssl~~l~-~~~lFvgS~~gds~L~~~~~~~~~~~~~l~- 466 (903)
...++-+..||.+..-.+...... .........+......++..-. +.+++.||. |+.+.-++-..-+.+..+.
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~--D~~v~lwd~~~~~~~~~~~~ 116 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW--DKTLRLWDLRTGTTYKRFVG 116 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET--TSEEEEEETTSSCEEEEEEC
T ss_pred CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC--CCcEEEEECCCCcEEEEEcC
Confidence 445667788998887776533210 0010110111222334454444 345555554 4444444321122334443
Q ss_pred ccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEEec
Q 044070 467 NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRS 504 (903)
Q Consensus 467 N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~lr~ 504 (903)
.-++|.++++... . +.++++| .+|.+++..-
T Consensus 117 h~~~v~~v~~sp~----~-~~l~s~~--~d~~i~~wd~ 147 (343)
T 2xzm_R 117 HQSEVYSVAFSPD----N-RQILSAG--AEREIKLWNI 147 (343)
T ss_dssp CCSCEEEEEECSS----T-TEEEEEE--TTSCEEEEES
T ss_pred CCCcEEEEEECCC----C-CEEEEEc--CCCEEEEEec
Confidence 3467877776431 2 2344433 4688888754
No 126
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=49.07 E-value=2.3e+02 Score=28.72 Aligned_cols=114 Identities=2% Similarity=-0.170 Sum_probs=60.7
Q ss_pred CEEEEEEeCCcEEEEEeEEeccccceEEEEeee-ccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceE
Q 044070 629 NMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQH-MRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYT 707 (903)
Q Consensus 629 ~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~-~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (903)
.+++.+..++.+.++... .+......... ......|.++++.+... ...+
T Consensus 171 ~~l~sgs~D~~v~lwd~~----~~~~~~~~~~~l~~H~~~V~~v~~sp~~~-------------------------~~~~ 221 (297)
T 2pm7_B 171 RKFVTGGADNLVKIWKYN----SDAQTYVLESTLEGHSDWVRDVAWSPTVL-------------------------LRSY 221 (297)
T ss_dssp CEEEEEETTSCEEEEEEE----TTTTEEEEEEEECCCSSCEEEEEECCCCS-------------------------SSEE
T ss_pred ceEEEEcCCCcEEEEEEc----CCCceEEEEEEecCCCCceEEEEECCCCC-------------------------CceE
Confidence 355666666766655332 11111111111 23456789998876310 1368
Q ss_pred EEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 708 FVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 708 l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
||.|.+|++|+||++......... ..+. . .+.. ....++.+.. +..+|..|-.||.+..|+...
T Consensus 222 las~s~D~~v~iWd~~~~~~~~~~--~~~~-~--~~~~---~~v~~~~~s~-~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 222 MASVSQDRTCIIWTQDNEQGPWKK--TLLK-E--EKFP---DVLWRASWSL-SGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEETTSCEEEEEESSTTSCCEE--EESS-S--SCCS---SCEEEEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred EEEEECCCcEEEEEeCCCCCccce--eeee-c--ccCC---CcEEEEEECC-CCCEEEEEcCCCcEEEEEECC
Confidence 999999999999998753211000 0000 0 0000 0112333322 356788999999999998763
No 127
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=48.55 E-value=2.9e+02 Score=29.85 Aligned_cols=120 Identities=14% Similarity=0.176 Sum_probs=69.1
Q ss_pred eEEEEEec--CCEEEEEE-eCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCC
Q 044070 620 SISLGAVA--HNMIIVST-SNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVP 696 (903)
Q Consensus 620 ~I~~As~~--~~~vvva~-~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~ 696 (903)
.|.+.+.. +.+++++. .++.+.++.... ..+ ..+...........|.|+++.+.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~--~~~-~~~~~~~~~~~~~~v~~~~~sp~-------------------- 160 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDK--TSK-NVLKLRKRFCFSKRPNAISIAED-------------------- 160 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECS--SSS-SCEEEEEEEECSSCEEEEEECTT--------------------
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcC--CCC-ceeeeeecccCCCCceEEEEcCC--------------------
Confidence 46666665 44543333 456665543220 012 12333333355678999998762
Q ss_pred CCCCccccceEEEEEecCCeEEEEEccCCCCee-EEEeeeeeecccCCCCCCCCCcceeEEeec--CccEEEEEecCCcE
Q 044070 697 ALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLR-VLASGSIVLTNTMGTAISGCIPQDVRLVLA--DQFYVLAGLRNGML 773 (903)
Q Consensus 697 ~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~-~~s~~~l~~~~~~~~~~s~~~p~si~l~~~--~~~~L~vgl~~G~l 773 (903)
..+|++|..++.|.+|.+...+... .. ..+. +.. ....++.+..- +..+|+.|-.||.+
T Consensus 161 --------~~~l~~~~~~g~v~~~~~~~~~~~~~~~--~~~~-----~h~---~~v~~~~~sp~~~~~~~l~s~~~d~~i 222 (450)
T 2vdu_B 161 --------DTTVIIADKFGDVYSIDINSIPEEKFTQ--EPIL-----GHV---SMLTDVHLIKDSDGHQFIITSDRDEHI 222 (450)
T ss_dssp --------SSEEEEEETTSEEEEEETTSCCCSSCCC--CCSE-----ECS---SCEEEEEEEECTTSCEEEEEEETTSCE
T ss_pred --------CCEEEEEeCCCcEEEEecCCcccccccc--eeee-----ccc---CceEEEEEcCCCCCCcEEEEEcCCCcE
Confidence 4688999999999999987654321 00 0000 000 01245555543 26689999999999
Q ss_pred EEEEecC
Q 044070 774 LRFEWPP 780 (903)
Q Consensus 774 ~~~~~~~ 780 (903)
..|.+..
T Consensus 223 ~vwd~~~ 229 (450)
T 2vdu_B 223 KISHYPQ 229 (450)
T ss_dssp EEEEESC
T ss_pred EEEECCC
Confidence 9998763
No 128
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=46.47 E-value=2.8e+02 Score=29.06 Aligned_cols=72 Identities=4% Similarity=0.003 Sum_probs=38.2
Q ss_pred CCeEEEEeCCCCEEEEEEEeCCC-ccEEEEceeccCCCCcceEEEECCCeEEEEEeeCCeEEEEEeCCceEEeeeecccc
Q 044070 391 IPKMVFCVDTGEFFMIEIAFGSD-GHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIA 469 (903)
Q Consensus 391 ~~~~LL~~e~G~l~~l~l~~~~~-~~~v~~~~~~~~~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~~~~~~~~~l~N~g 469 (903)
+..+++.+.+|.|+.+.... ++ .++.. ... ...++. .+.++.+++++ .++.|+.++...=+.+..+..-+
T Consensus 103 ~~~v~v~~~~g~l~a~d~~t-G~~~W~~~----~~~-~~~~~p-~~~~~~v~v~~--~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSD-GTVAWQTK----VAG-EALSRP-VVSDGLVLIHT--SNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp TTEEEEEETTSEEEEEETTT-CCEEEEEE----CSS-CCCSCC-EEETTEEEEEC--TTSEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEEcCCCEEEEEECCC-CCEEEEEe----CCC-ceEcCC-EEECCEEEEEc--CCCeEEEEECCCCcEEEEEeCCC
Confidence 57899999999998775432 32 12222 111 111111 23478888886 46688888743223344444333
Q ss_pred cc
Q 044070 470 PI 471 (903)
Q Consensus 470 PI 471 (903)
|+
T Consensus 174 ~~ 175 (376)
T 3q7m_A 174 PS 175 (376)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 129
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=45.76 E-value=68 Score=35.25 Aligned_cols=63 Identities=6% Similarity=0.040 Sum_probs=40.8
Q ss_pred EEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCC
Q 044070 621 ISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPA 700 (903)
Q Consensus 621 I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~ 700 (903)
+.......+.++++.++|++..+... ++ .+. .+...|+|++..+.
T Consensus 129 v~~i~~~~p~~av~~~dG~L~v~dl~----~~--~~~-----~~~~~Vs~v~WSpk------------------------ 173 (388)
T 1xip_A 129 VFQLKNVNNTLVILNSVNDLSALDLR----TK--STK-----QLAQNVTSFDVTNS------------------------ 173 (388)
T ss_dssp EEEEEECSSEEEEEETTSEEEEEETT----TC--CEE-----EEEESEEEEEECSS------------------------
T ss_pred eeeEEecCCCEEEEECCCCEEEEEcc----CC--ccc-----cccCCceEEEEcCC------------------------
Confidence 43333445557777888877655322 22 222 24468999999761
Q ss_pred ccccceEEEEEecCCeEEEEEccC
Q 044070 701 GVIIGYTFVIGTHRPSVEVLSFVP 724 (903)
Q Consensus 701 ~~~~~~~l~vg~~d~~v~i~sl~~ 724 (903)
. +++|..||++++|+.+.
T Consensus 174 ----G--~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 174 ----Q--LAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp ----E--EEEEETTSCEEEEEEET
T ss_pred ----c--eEEEEcCCcEEEEcCCC
Confidence 2 67899999999997654
No 130
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=38.22 E-value=2.6e+02 Score=30.43 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=35.4
Q ss_pred EEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 708 FVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 708 l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
+|+++.||+|.+|++...+. +.+. . -.+++....-| +.+|..||.+..|..+
T Consensus 139 ~av~~~dG~L~v~dl~~~~~-~~~~----~------------~Vs~v~WSpkG---~~vg~~dg~i~~~~~~ 190 (388)
T 1xip_A 139 LVILNSVNDLSALDLRTKST-KQLA----Q------------NVTSFDVTNSQ---LAVLLKDRSFQSFAWR 190 (388)
T ss_dssp EEEEETTSEEEEEETTTCCE-EEEE----E------------SEEEEEECSSE---EEEEETTSCEEEEEEE
T ss_pred EEEEECCCCEEEEEccCCcc-cccc----C------------CceEEEEcCCc---eEEEEcCCcEEEEcCC
Confidence 77889999999999986552 2211 0 11344444334 7789999999988665
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=34.98 E-value=3.7e+02 Score=27.20 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=33.7
Q ss_pred CCeEEEEEeeC-----CeEEEEEeCCceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEEEE
Q 044070 437 GRFLSAFVEMG-----DGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRII 502 (903)
Q Consensus 437 ~~~lFvgS~~g-----ds~L~~~~~~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~~l 502 (903)
++.+|+++..+ ++.++.++.+..+++..++.-+....+.+... ...++++++. ++.+.++
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d----g~~l~v~~~~--~~~v~~~ 116 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNT----TQTLWFGNTV--NSAVTAI 116 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETT----TTEEEEEETT--TTEEEEE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCC----CCEEEEEecC--CCEEEEE
Confidence 45788887654 67888887544455555554444555655431 2246655542 3455443
No 132
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=33.72 E-value=4.3e+02 Score=27.52 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=55.1
Q ss_pred cCCEEEEEEecCCCcEEEEEEEE---eccceeEeeeeeccccccccCCCCCCccEEEEEe-CCCcEEEEEEeCCCcceEe
Q 044070 63 KETSIELVIIGEDGIVQSVCEQA---VFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVIS-DSGKLSFLAFCNEMHRFFP 138 (903)
Q Consensus 63 k~~~LeIy~~~~~g~L~~v~~~~---lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~t-ds~~l~iL~~d~~~~~f~t 138 (903)
.+..+.+|.++.+|++....... ....+.+++ + .|.+ .+|+++. .+..+.+..++. ..++..
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---------spdG---~~l~~~~~~~~~v~~~~~~~-~g~~~~ 182 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV-F---------DPTE---TYLYSADLTANKLWTHRKLA-SGEVEL 182 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE-E---------CTTS---SEEEEEETTTTEEEEEEECT-TSCEEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEE-E---------CCCC---CEEEEEcCCCCEEEEEEECC-CCCEEE
Confidence 46679999998788765433221 112344433 2 1322 3566543 245566655543 455543
Q ss_pred eEEEEecCCCcccccCCcEEEECCCCCeeEEeec-cccEEEEEee
Q 044070 139 VAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAY-EDRLGLFSLS 182 (903)
Q Consensus 139 v~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~-e~~l~v~pl~ 182 (903)
+........+. ....++++|+|+.+++... .+.+.++.++
T Consensus 183 ~~~~~~~~~g~----~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 183 VGSVDAPDPGD----HPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EEEEECSSTTC----CEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eeeEecCCCCC----CCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 33222211111 1247899999998887764 4567777664
No 133
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=32.55 E-value=4.1e+02 Score=26.97 Aligned_cols=114 Identities=11% Similarity=0.124 Sum_probs=66.9
Q ss_pred EEecCCCcCeEEEE-cCCEEEEEEecCCCcEEEEEEEEec-cceeEeeeeeccccccccCCCCCCccEEEEEeCCCcEEE
Q 044070 49 GHLRSPTSNDVVFG-KETSIELVIIGEDGIVQSVCEQAVF-GTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSF 126 (903)
Q Consensus 49 g~f~~~~~~~LVv~-k~~~LeIy~~~~~g~L~~v~~~~lf-g~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~i 126 (903)
..|. ++.+.|+.+ .+..+.||.+.. ++...+....-+ +.|.+++-. |+ ...++|+-++.++.+-+
T Consensus 19 v~~s-~~g~~lasgs~D~~v~lwd~~~-~~~~~~~~l~gH~~~V~~v~~~----------~~-~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 19 AQMD-YYGTRLATCSSDRSVKIFDVRN-GGQILIADLRGHEGPVWQVAWA----------HP-MYGNILASCSYDRKVII 85 (316)
T ss_dssp EEEC-GGGCEEEEEETTTEEEEEEEET-TEEEEEEEEECCSSCEEEEEEC----------CG-GGSSCEEEEETTSCEEE
T ss_pred eeEc-CCCCEEEEEeCCCeEEEEEecC-CCcEEEEEEcCCCccEEEEEeC----------CC-CCCCEEEEEECCCEEEE
Confidence 3453 334455554 478999999864 333444444433 366666532 11 22367888888888765
Q ss_pred EEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCC--CCeeEEeeccccEEEEEeec
Q 044070 127 LAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSS--GCLIAVSAYEDRLGLFSLSM 183 (903)
Q Consensus 127 L~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~--~R~ial~~~e~~l~v~pl~~ 183 (903)
||....++..+. .+.. . ...-.-++..|. ++.++.+..++.+.++-+..
T Consensus 86 --Wd~~~~~~~~~~--~~~~--h--~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 86 --WREENGTWEKSH--EHAG--H--DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp --ECCSSSCCCEEE--EECC--C--SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred --EECCCCcceEEE--EccC--C--CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 666554332221 1211 0 111235788887 88999999999999887653
No 134
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=32.38 E-value=1.1e+02 Score=33.66 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=26.2
Q ss_pred CCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEcc
Q 044070 664 LQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFV 723 (903)
Q Consensus 664 l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~ 723 (903)
....|.|++..+. ..+|++|+.|++|++|.+.
T Consensus 191 ~~~~v~~v~wspd----------------------------g~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 191 STVAVTSVCWSPK----------------------------GKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp GGGCEEEEEECTT----------------------------SSCEEEEETTSCEEEECTT
T ss_pred CCCceeEEEEcCC----------------------------CCEEEEEcCCCcEEEEccC
Confidence 4568999998763 4588999999999999875
No 135
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=32.24 E-value=4.8e+02 Score=27.58 Aligned_cols=90 Identities=13% Similarity=0.173 Sum_probs=49.3
Q ss_pred eccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeee----
Q 044070 661 HMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSI---- 736 (903)
Q Consensus 661 ~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l---- 736 (903)
.......|.|++..+.. ..+|++|..|++|++|.+...+..........
T Consensus 182 ~~~~~~~v~~v~~~p~~---------------------------~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPSN---------------------------PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEECSSCEEEEEEETTE---------------------------EEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred ecCCCCCcEEEEECCCC---------------------------CceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 34566788898887621 45899999999999999875443211110000
Q ss_pred ---eec-ccC------CCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 737 ---VLT-NTM------GTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 737 ---~~~-~~~------~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
... ... .+.. ....++.....+...|+.+..||.+..|.+.
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~--~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIA--SSLANVRWIGSDGSGILAMCKSGAWLRWNLF 285 (393)
T ss_dssp CSEEEESGGGC------CCS--SSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred eEEecccccceeeeeccccc--ccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence 000 000 0000 0012333333346778999999999888764
No 136
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=30.89 E-value=2.9e+02 Score=30.13 Aligned_cols=84 Identities=10% Similarity=0.078 Sum_probs=49.1
Q ss_pred ccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEE----EecCCeEEEEEccCC-----CCeeEEE
Q 044070 662 MRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVI----GTHRPSVEVLSFVPK-----EGLRVLA 732 (903)
Q Consensus 662 ~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v----g~~d~~v~i~sl~~~-----~~l~~~s 732 (903)
..+...|.|+++.+. ..+||| |..|++|+||++... +..+.+.
T Consensus 89 ~~~~~~v~~l~~spd----------------------------g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~ 140 (434)
T 2oit_A 89 VPMKFPIHHLALSCD----------------------------NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFA 140 (434)
T ss_dssp ECCSSCEEEEEECTT----------------------------SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSE
T ss_pred ccCCCcccEEEEcCC----------------------------CCEEEEEEeccCCCceEEEEEccccccCCcCCcceee
Confidence 445677899988763 357774 556999999998643 1101111
Q ss_pred eeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 733 SGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 733 ~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
.... +.+.. ....++.+...+..+|..|..||.+..|.+..
T Consensus 141 ~~~~-----~~~h~--~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~ 181 (434)
T 2oit_A 141 YHKL-----LKDAG--GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE 181 (434)
T ss_dssp EEEC-----CCSGG--GSEEEEEECSSCTTEEEEEETTSCEEEEEESS
T ss_pred eeec-----cCCCC--CceEEEEECCCCCCEEEEEECCCeEEEEEcCC
Confidence 0000 00000 01245555444467788899999999998763
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=28.75 E-value=2e+02 Score=28.08 Aligned_cols=108 Identities=10% Similarity=0.055 Sum_probs=60.4
Q ss_pred CCCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEe--CCCcEEEEEEe
Q 044070 53 SPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVIS--DSGKLSFLAFC 130 (903)
Q Consensus 53 ~~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~t--ds~~l~iL~~d 130 (903)
+++.+.|+++....|.+|.+...++...+......+.|.+++ + .| ...+|+.+. +++...+..++
T Consensus 50 spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~-------sp---dg~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 50 SPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHG---I-------SP---DGALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp CTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCE---E-------CT---TSSEEEEEECTTTSSCEEEEEE
T ss_pred CCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceE---E-------CC---CCCEEEEEEeCCCCcceEEEEE
Confidence 456677888888999999885425444332211112233222 2 12 224666666 34567777777
Q ss_pred CCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEe-eccccEEEEEeec
Q 044070 131 NEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVS-AYEDRLGLFSLSM 183 (903)
Q Consensus 131 ~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~-~~e~~l~v~pl~~ 183 (903)
....+... +.... ....++..|+++.+++. ..++...++.++.
T Consensus 117 ~~~~~~~~-----~~~~~-----~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~ 160 (297)
T 2ojh_A 117 STGGTPRL-----MTKNL-----PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI 160 (297)
T ss_dssp TTCCCCEE-----CCSSS-----SEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred CCCCceEE-----eecCC-----CccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence 66544322 11111 12357899999988854 4556666776643
No 138
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=25.42 E-value=5e+02 Score=25.63 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=18.3
Q ss_pred ceEEEEEecCCeEEEEEccCCC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKE 726 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~ 726 (903)
..+++.|..|++|+||.+...+
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBT
T ss_pred CCEEEEEecCcceeEEECCCCc
Confidence 4588899999999999987544
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=25.41 E-value=7.6e+02 Score=27.72 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=37.9
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeec---CccEEEEEe-cCCcEEEEEe
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLA---DQFYVLAGL-RNGMLLRFEW 778 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~---~~~~L~vgl-~~G~l~~~~~ 778 (903)
..+|+++..|++|.+|.+.... .+.+. .+. .+ .-|+++.+... +..+|+++- .+|.+..+..
T Consensus 190 g~~l~v~~~d~~V~v~D~~~~t-~~~~~--~i~----~g-----~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 190 GRYLLVIGRDARIDMIDLWAKE-PTKVA--EIK----IG-----IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp SCEEEEEETTSEEEEEETTSSS-CEEEE--EEE----CC-----SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred CCEEEEECCCCeEEEEECcCCC-CcEEE--EEe----cC-----CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec
Confidence 4689999999999999983111 22222 121 11 14678887762 345566665 5788876643
No 140
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=24.65 E-value=1.3e+02 Score=35.06 Aligned_cols=64 Identities=13% Similarity=-0.001 Sum_probs=39.1
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEecC
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP 780 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~~ 780 (903)
..+||+++.||+|+||..+. .+..+. ...+ +.. . --+++.+.+ ++.+|.+|..||.+..|.+..
T Consensus 97 G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~----~~~---~-sv~svafSP-DG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 97 DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGN----LSS---R-TYHCFEWNP-IESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp SSCEEEEETTSCEEEEETTE--EEEECC-CSSC----STT---T-CEEEEEECS-SSSCEEEEETTSEEEEEECCC
T ss_pred CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCc----ccc---c-cEEEEEEcC-CCCEEEEEcCCCEEEEEECCC
Confidence 56899999999999998432 221111 0000 000 0 013343322 567899999999999999764
No 141
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=24.12 E-value=6.8e+02 Score=26.74 Aligned_cols=18 Identities=6% Similarity=-0.107 Sum_probs=15.6
Q ss_pred ceEEEEEe-cCCeEEEEEc
Q 044070 705 GYTFVIGT-HRPSVEVLSF 722 (903)
Q Consensus 705 ~~~l~vg~-~d~~v~i~sl 722 (903)
..+++++. .|++|.||.+
T Consensus 319 ~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSEEEEEETTCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEe
Confidence 45888888 6999999999
No 142
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=23.02 E-value=2.7e+02 Score=31.47 Aligned_cols=77 Identities=6% Similarity=-0.186 Sum_probs=43.6
Q ss_pred eeEEEEEec-CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCC
Q 044070 619 VSISLGAVA-HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPA 697 (903)
Q Consensus 619 ~~I~~As~~-~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~ 697 (903)
..|.+++.. +.+|+.+..+|.+.++... ++. .... .-......|.+++....+.|
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~----~~~-~~~~-~~~~H~~~V~sv~~~~s~~g------------------ 322 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLT----DPE-VPSF-YDQVHDSYILSVSTAYSDFE------------------ 322 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETT----BCS-SCSE-EEECSSSCEEEEEEECCTTS------------------
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECC----CCC-CceE-EeecccccEEEEEEEcCCCC------------------
Confidence 457676654 4566666667776655322 111 1100 01123567888843211110
Q ss_pred CCCccccceEEEEEecCCeEEEEEccCCC
Q 044070 698 LPAGVIIGYTFVIGTHRPSVEVLSFVPKE 726 (903)
Q Consensus 698 ~~~~~~~~~~l~vg~~d~~v~i~sl~~~~ 726 (903)
..+||.|.+|++|+||.+...+
T Consensus 323 -------~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 323 -------DTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp -------CCEEEEEETTSEEEEECGGGHH
T ss_pred -------CeEEEEeccCCeEEEEECCCCC
Confidence 2589999999999999987543
No 143
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=22.05 E-value=6.1e+02 Score=25.40 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred ecCCCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCCCcEEEEEEe
Q 044070 51 LRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFC 130 (903)
Q Consensus 51 f~~~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l~iL~~d 130 (903)
|...+..-+.....+.|.+|.+ .+|++.......-.+.+..++.-+ .++.+++....++.+.+ ||
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~s~------------dg~~~~v~~~~~~~i~~--~d 71 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDV-ASDTVYKSCVMPDKFGPGTAMMAP------------DNRTAYVLNNHYGDIYG--ID 71 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEET-TTTEEEEEEECSSCCSSCEEEECT------------TSSEEEEEETTTTEEEE--EE
T ss_pred ccCCCEEEEEeCCCCeEEEEEC-CCCcEEEEEecCCCCCCceeEECC------------CCCEEEEEeCCCCcEEE--Ee
Q ss_pred CCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeecc------------ccEEEEEeec
Q 044070 131 NEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYE------------DRLGLFSLSM 183 (903)
Q Consensus 131 ~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e------------~~l~v~pl~~ 183 (903)
.++.+... ..........+......++++|+++.+++.... +.+.++-+..
T Consensus 72 ~~t~~~~~--~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 134 (349)
T 1jmx_B 72 LDTCKNTF--HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 134 (349)
T ss_dssp TTTTEEEE--EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred CCCCcEEE--EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
No 144
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=21.91 E-value=7.6e+02 Score=26.48 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=22.0
Q ss_pred ceEEEEEecCCeEEEEEccCCCCeeEE
Q 044070 705 GYTFVIGTHRPSVEVLSFVPKEGLRVL 731 (903)
Q Consensus 705 ~~~l~vg~~d~~v~i~sl~~~~~l~~~ 731 (903)
..+||-|.+|++|+||++...+.+..+
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL 219 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKM 219 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEE
Confidence 468888999999999999876655544
No 145
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=21.70 E-value=5.6e+02 Score=27.37 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=61.1
Q ss_pred EEecCCCcCeEEEEcC----CEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCCCCccEEEEEeCCCcE
Q 044070 49 GHLRSPTSNDVVFGKE----TSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKL 124 (903)
Q Consensus 49 g~f~~~~~~~LVv~k~----~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~~~~D~Llv~tds~~l 124 (903)
..| +++.+.|+.+.. ..|.+|.+. +|+...+...+ +.+.++ .+ .| .++-+++....++..
T Consensus 184 ~~~-Spdg~~la~~s~~~~~~~i~~~d~~-tg~~~~l~~~~--~~~~~~---~~-------sp--dg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 184 PAW-SPDGSKLAYVTFESGRSALVIQTLA-NGAVRQVASFP--RHNGAP---AF-------SP--DGSKLAFALSKTGSL 247 (415)
T ss_dssp EEE-CTTSSEEEEEECTTSSCEEEEEETT-TCCEEEEECCS--SCEEEE---EE-------CT--TSSEEEEEECTTSSC
T ss_pred eEE-cCCCCEEEEEEecCCCcEEEEEECC-CCcEEEeecCC--CcccCE---EE-------cC--CCCEEEEEEecCCCc
Confidence 344 355667777653 388888874 55554433222 233333 23 13 233344466667787
Q ss_pred EEEEEeCCCcceEeeEEEEecCCCcccccCCcEEEECCCCCeeEEeec-cccEEEEEee
Q 044070 125 SFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAY-EDRLGLFSLS 182 (903)
Q Consensus 125 ~iL~~d~~~~~f~tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~-e~~l~v~pl~ 182 (903)
.+..||..+.+..++ ..... ....++..|+|+.+++... ++...|+.++
T Consensus 248 ~i~~~d~~~~~~~~l-----~~~~~----~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 248 NLYVMDLASGQIRQV-----TDGRS----NNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp EEEEEETTTCCEEEC-----CCCSS----CEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eEEEEECCCCCEEeC-----cCCCC----cccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 788889877655332 11111 1125788999999888775 3444555554
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=21.61 E-value=6.2e+02 Score=25.31 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=35.0
Q ss_pred EEEEE-ecCCe-EEEEEccCCCCeeEEEeeeeeecccCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEec
Q 044070 707 TFVIG-THRPS-VEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWP 779 (903)
Q Consensus 707 ~l~vg-~~d~~-v~i~sl~~~~~l~~~s~~~l~~~~~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~~ 779 (903)
+++++ ..++. |.+|.++....+.....+.+. .+ ..|..+.+..-++..++.+..+|.+..|.+.
T Consensus 141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~----~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 141 GLILIDRSSANTVRRFKIDADGVLFDTGQEFIS----GG-----TRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp CEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC----SS-----SSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEecCCCceEEEEEECCCCcEeecCCcccc----CC-----CCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 34444 44677 999999865443322211111 11 1356665554444344455578888888765
Done!