BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044071
HRGLSFVPFDAKNSSSGSGEDDHRAALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFF
SFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGVSWRLEWNKKHVPLGKGF
SFHICQVYQGKVFIKNVEMFMEPLLHIGPFRL

High Scoring Gene Products

Symbol, full name Information P value
AT4G22370 protein from Arabidopsis thaliana 2.6e-24
AT5G41470 protein from Arabidopsis thaliana 6.0e-16
AT1G71480 protein from Arabidopsis thaliana 5.4e-15
SO_3383
Uncharacterized protein
protein from Shewanella oneidensis MR-1 0.00016
SO_3383
transcriptional regulator-related protein
protein from Shewanella oneidensis MR-1 0.00016

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044071
        (152 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2132070 - symbol:AT4G22370 "AT4G22370" species...   278  2.6e-24   1
TAIR|locus:2177906 - symbol:AT5G41470 "AT5G41470" species...   199  6.0e-16   1
TAIR|locus:2825304 - symbol:AT1G71480 species:3702 "Arabi...   190  5.4e-15   1
UNIPROTKB|Q8EBW2 - symbol:SO_3383 "Uncharacterized protei...    99  0.00016   1
TIGR_CMR|SO_3383 - symbol:SO_3383 "transcriptional regula...    99  0.00016   1


>TAIR|locus:2132070 [details] [associations]
            symbol:AT4G22370 "AT4G22370" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AY924820 IPI:IPI00539375
            RefSeq:NP_193968.2 UniGene:At.21353 UniGene:At.70102
            EnsemblPlants:AT4G22370.1 GeneID:828332 KEGG:ath:AT4G22370
            TAIR:At4g22370 HOGENOM:HOG000137612 OMA:MEPIFHI PhylomeDB:Q5BPK8
            ProtClustDB:CLSN2920340 Genevestigator:Q5BPK8 Uniprot:Q5BPK8
        Length = 130

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 50/78 (64%), Positives = 60/78 (76%)

Query:    75 FFTYLIRSLGNNIEFVVKPTLHDGMNVGVSWRLEWNKKHVPLGKGFSFHICQVYQGKVFI 134
             FF +LI  LG +I+ +VKPT  DGM VGV W+LE +K H+ LGKGFSFHIC +YQGK+ I
Sbjct:     3 FFYWLIMKLGKDIKIIVKPTFKDGMTVGVQWQLECDKSHIQLGKGFSFHICHMYQGKLLI 62

Query:   135 KNVEMFMEPLLHIGPFRL 152
             KNVEMFMEP+ HI   RL
Sbjct:    63 KNVEMFMEPIFHIEHLRL 80


>TAIR|locus:2177906 [details] [associations]
            symbol:AT5G41470 "AT5G41470" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002688 InterPro:IPR009959
            Pfam:PF12680 IPI:IPI00544065 RefSeq:NP_198962.2 UniGene:At.55297
            ProteinModelPortal:F4JYE8 EnsemblPlants:AT5G41470.1 GeneID:834148
            KEGG:ath:AT5G41470 OMA:MGQNVKF Uniprot:F4JYE8
        Length = 277

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 40/126 (31%), Positives = 72/126 (57%)

Query:    28 ETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNI 87
             + V+K YS+I  ++  +LS  I  +C    + FSF +P +GK++ ++FF  L++S+G N+
Sbjct:    77 DAVMKFYSSINEKNQDQLSSCISSDC--FIDDFSFPKPFRGKQEAMEFFEELVKSMGQNV 134

Query:    88 EFVVKPTLH-DGMNVGVSWRLEWNKKHVPLGKGFSFHICQVYQGKVFIKNVEMFMEPLLH 146
             +F V+     DG +  V+W LEW  + +P  +G SF+      G++ I+N  + +E  + 
Sbjct:   135 KFCVENVCEGDGHSAAVNWHLEWKGRKIPFTRGCSFYEFIDEGGRLVIRNARILIESPIK 194

Query:   147 IGPFRL 152
              G   L
Sbjct:   195 PGGITL 200


>TAIR|locus:2825304 [details] [associations]
            symbol:AT1G71480 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0006606 "protein import into nucleus"
            evidence=ISS] [GO:0006810 "transport" evidence=IEA] [GO:0008565
            "protein transporter activity" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0015996 "chlorophyll catabolic process"
            evidence=RCA] InterPro:IPR002075 Pfam:PF02136 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0006810 EMBL:AC016163 GO:GO:0009535
            UniGene:At.43507 UniGene:At.75242 EMBL:BT010641 EMBL:AK175810
            EMBL:AK175869 EMBL:AK176645 EMBL:AK176822 EMBL:AK176871
            EMBL:AK316764 IPI:IPI00540601 RefSeq:NP_177304.1
            ProteinModelPortal:Q9C9I5 SMR:Q9C9I5 IntAct:Q9C9I5 STRING:Q9C9I5
            PRIDE:Q9C9I5 EnsemblPlants:AT1G71480.1 GeneID:843489
            KEGG:ath:AT1G71480 TAIR:At1g71480 eggNOG:NOG300686
            HOGENOM:HOG000243032 InParanoid:Q9C9I5 OMA:CVEPAIK PhylomeDB:Q9C9I5
            ArrayExpress:Q9C9I5 Genevestigator:Q9C9I5 Uniprot:Q9C9I5
        Length = 216

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 44/125 (35%), Positives = 63/125 (50%)

Query:    25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLG 84
             +A E V   Y+A+    L  ++D+I  +C  V     F  P  G+K +LDFF   I S  
Sbjct:    70 SASEVVSSFYAAVNVHDLSSVTDLIAQDC--VYEDLVFSSPFVGRKAILDFFGKFIESTS 127

Query:    85 NNIEFVVKP-TLHDGMNVGVSWRLEWNKKHVPLGKGFSFHICQVYQGKVFIKNVEMFMEP 143
              +++FV+   +  D   VGVSW LEW  K+ P  KG SF+  +V  GK  I      +EP
Sbjct:   128 TDLQFVIDDISTEDSSAVGVSWHLEWKGKNFPFSKGCSFYRLEVIDGKRQIVYGRDCVEP 187

Query:   144 LLHIG 148
              +  G
Sbjct:   188 AIKPG 192


>UNIPROTKB|Q8EBW2 [details] [associations]
            symbol:SO_3383 "Uncharacterized protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISS]
            GO:GO:0003700 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR009959 Pfam:PF12680 HOGENOM:HOG000273530 OMA:VIYHRDY
            RefSeq:NP_718937.1 ProteinModelPortal:Q8EBW2 DNASU:1171061
            GeneID:1171061 KEGG:son:SO_3383 PATRIC:23526446
            ProtClustDB:CLSK907139 Uniprot:Q8EBW2
        Length = 148

 Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 23/98 (23%), Positives = 47/98 (47%)

Query:    22 DHRAALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIR 81
             +H   ++  + LY A+   +L  L+++  D    +C F   +  + G   +  +F  L +
Sbjct:     8 EHSGLVDDFIGLYQALNKDNLHLLAEVYDDN---IC-FIDPMHQVNGLNALTQYFAKLYQ 63

Query:    82 SLGNNIEFVVKPTLHDGMNVGVSWRLEWNKKHVPLGKG 119
             ++G  I F +K  L D     + W++++  +H  L KG
Sbjct:    64 NIGY-IHFEIKEVLQDDTQASLFWQMQY--RHPKLNKG 98


>TIGR_CMR|SO_3383 [details] [associations]
            symbol:SO_3383 "transcriptional regulator-related protein"
            species:211586 "Shewanella oneidensis MR-1" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] GO:GO:0003700 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR009959 Pfam:PF12680
            HOGENOM:HOG000273530 OMA:VIYHRDY RefSeq:NP_718937.1
            ProteinModelPortal:Q8EBW2 DNASU:1171061 GeneID:1171061
            KEGG:son:SO_3383 PATRIC:23526446 ProtClustDB:CLSK907139
            Uniprot:Q8EBW2
        Length = 148

 Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 23/98 (23%), Positives = 47/98 (47%)

Query:    22 DHRAALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIR 81
             +H   ++  + LY A+   +L  L+++  D    +C F   +  + G   +  +F  L +
Sbjct:     8 EHSGLVDDFIGLYQALNKDNLHLLAEVYDDN---IC-FIDPMHQVNGLNALTQYFAKLYQ 63

Query:    82 SLGNNIEFVVKPTLHDGMNVGVSWRLEWNKKHVPLGKG 119
             ++G  I F +K  L D     + W++++  +H  L KG
Sbjct:    64 NIGY-IHFEIKEVLQDDTQASLFWQMQY--RHPKLNKG 98


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.141   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      152       152   0.00073  105 3  11 22  0.43    31
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.14u 0.07s 15.21t   Elapsed:  00:00:05
  Total cpu time:  15.14u 0.07s 15.21t   Elapsed:  00:00:05
  Start:  Sat May 11 06:50:53 2013   End:  Sat May 11 06:50:58 2013

Back to top