BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044071
         (152 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EAK|A Chain A, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With Lactose
 pdb|2EAK|B Chain B, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With Lactose
 pdb|2EAK|C Chain C, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With Lactose
 pdb|2EAL|A Chain A, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With Forssman Pentasaccharide
 pdb|2EAL|B Chain B, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With Forssman Pentasaccharide
 pdb|2ZHK|A Chain A, Crystal Structure Of Human Galectin-9 N-terminal Crd In
           Complex With N-acetyllactosamine Dimer (crystal 1)
 pdb|2ZHK|B Chain B, Crystal Structure Of Human Galectin-9 N-terminal Crd In
           Complex With N-acetyllactosamine Dimer (crystal 1)
 pdb|2ZHL|A Chain A, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine Dimer (Crystal 2)
 pdb|2ZHL|B Chain B, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine Dimer (Crystal 2)
 pdb|2ZHL|C Chain C, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine Dimer (Crystal 2)
 pdb|2ZHL|D Chain D, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine Dimer (Crystal 2)
 pdb|2ZHM|A Chain A, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine Trimer (Crystal 1)
 pdb|2ZHM|B Chain B, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine Trimer (Crystal 1)
 pdb|2ZHM|C Chain C, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine Trimer (Crystal 1)
 pdb|2ZHM|D Chain D, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine Trimer (Crystal 1)
 pdb|2ZHN|A Chain A, Crystal Structure Of Human Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine Trimer (Crystal 2)
          Length = 148

 Score = 33.1 bits (74), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 84  GNNIEFVVKPTLHDGMNV------GVSWRLEWNKKHVPLGKGFSFHICQVYQGKVF 133
           GN+I F   P   DG  V        SW  E  K H+P  KG  F +C + Q   F
Sbjct: 55  GNDIAFHFNPRFEDGGYVVCNTRQNGSWGPEERKTHMPFQKGMPFDLCFLVQSSDF 110


>pdb|3LSD|A Chain A, N-Domain Of Human AdhesionGROWTH-Regulatory Galectin-9
 pdb|3LSE|A Chain A, N-Domain Of Human AdhesionGROWTH-Regulatory Galectin-9 In
           C With Lactose
          Length = 143

 Score = 33.1 bits (74), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 84  GNNIEFVVKPTLHDGMNV------GVSWRLEWNKKHVPLGKGFSFHICQVYQGKVF 133
           GN+I F   P   DG  V        SW  E  K H+P  KG  F +C + Q   F
Sbjct: 50  GNDIAFHFNPRFEDGGYVVCNTRQNGSWGPEERKTHMPFQKGMPFDLCFLVQSSDF 105


>pdb|2YY1|A Chain A, Crystal Sturcture Of N-Terminal Domain Of Human Galectin-9
           Containing L-Acetyllactosamine
          Length = 160

 Score = 33.1 bits (74), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 84  GNNIEFVVKPTLHDGMNV------GVSWRLEWNKKHVPLGKGFSFHICQVYQGKVF 133
           GN+I F   P   DG  V        SW  E  K H+P  KG  F +C + Q   F
Sbjct: 62  GNDIAFHFNPRFEDGGYVVCNTRQNGSWGPEERKTHMPFQKGMPFDLCFLVQSSDF 117


>pdb|2VGM|A Chain A, Structure Of Yeast Dom34 : A Protein Related To
           Translation Termination Factor Erf1 And Involved In
           No-Go Decay.
 pdb|3IZQ|0 Chain 0, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
           Translating Ribosome
 pdb|3J16|A Chain A, Models Of Ribosome-Bound Dom34p And Rli1p And Their
           Ribosomal Binding Partners
          Length = 386

 Score = 27.3 bits (59), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 68  GKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGVSWRLEWNKKHVPLGKGFSFHICQV 127
           GKK+  D     I+ +  +  F +K        V V+     +   +P+GK  SF +  V
Sbjct: 55  GKKKSTDLVKLKIKVISED--FDMKDEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYV 112

Query: 128 YQGKVFIKNVEMFMEPLLH 146
           Y   +  +N   FM+ LL+
Sbjct: 113 YPFTIIKQNFNKFMQKLLN 131


>pdb|3B5L|B Chain B, Crystal Structure Of A Novel Engineered Retroaldolase:
           Ra-61
          Length = 198

 Score = 26.9 bits (58), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 90  VVKPTLHDGMNVGVSWRLEWNKKHVPLGKGFS 121
            V  TLH G +   SWR   N  H   GKG+S
Sbjct: 30  TVSMTLHSGGSYSTSWR---NTGHFKAGKGWS 58


>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
           Lanuginosus At 3.1 Angstrom Resolution. This File
           Contains The Beta Subunits Of The Fatty Acid Synthase.
           The Entire Crystal Structure Consists Of One
           Heterododecameric Fatty Acid Synthase And Is Described
           In Remark 400
 pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
           Lanuginosus At 3.1 Angstrom Resolution. This File
           Contains The Beta Subunits Of The Fatty Acid Synthase.
           The Entire Crystal Structure Consists Of One
           Heterododecameric Fatty Acid Synthase And Is Described
           In Remark 400
 pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
           Lanuginosus At 3.1 Angstrom Resolution. This File
           Contains The Beta Subunits Of The Fatty Acid Synthase.
           The Entire Crystal Structure Consists Of One
           Heterododecameric Fatty Acid Synthase And Is Described
           In Remark 400
 pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
           Lanuginosus At 3.1 Angstrom Resolution. This File
           Contains The Beta Subunits Of The Fatty Acid Synthase.
           The Entire Crystal Structure Consists Of One
           Heterododecameric Fatty Acid Synthase And Is Described
           In Remark 400
 pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
           Lanuginosus At 3.1 Angstrom Resolution. This File
           Contains The Beta Subunits Of The Fatty Acid Synthase.
           The Entire Crystal Structure Consists Of One
           Heterododecameric Fatty Acid Synthase And Is Described
           In Remark 400
 pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
           Lanuginosus At 3.1 Angstrom Resolution. This File
           Contains The Beta Subunits Of The Fatty Acid Synthase.
           The Entire Crystal Structure Consists Of One
           Heterododecameric Fatty Acid Synthase And Is Described
           In Remark 400
 pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
           Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
           Resolution. This File Contains The Beta Subunits Of The
           Fatty Acid Synthase. The Entire Crystal Structure
           Consists Of One Heterododecameric Fatty Acid Synthase
           And Is Described In Remark 400
 pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
           Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
           Resolution. This File Contains The Beta Subunits Of The
           Fatty Acid Synthase. The Entire Crystal Structure
           Consists Of One Heterododecameric Fatty Acid Synthase
           And Is Described In Remark 400
 pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
           Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
           Resolution. This File Contains The Beta Subunits Of The
           Fatty Acid Synthase. The Entire Crystal Structure
           Consists Of One Heterododecameric Fatty Acid Synthase
           And Is Described In Remark 400
 pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
           Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
           Resolution. This File Contains The Beta Subunits Of The
           Fatty Acid Synthase. The Entire Crystal Structure
           Consists Of One Heterododecameric Fatty Acid Synthase
           And Is Described In Remark 400
 pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
           Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
           Resolution. This File Contains The Beta Subunits Of The
           Fatty Acid Synthase. The Entire Crystal Structure
           Consists Of One Heterododecameric Fatty Acid Synthase
           And Is Described In Remark 400
 pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
           Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
           Resolution. This File Contains The Beta Subunits Of The
           Fatty Acid Synthase. The Entire Crystal Structure
           Consists Of One Heterododecameric Fatty Acid Synthase
           And Is Described In Remark 400
          Length = 2060

 Score = 26.9 bits (58), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 84  GNNIEFVVKPTLHDGMNVGVSWRLEWNKKHVP 115
           G N E   KP L D  +  V + ++W K+H P
Sbjct: 529 GTNTEVGYKPELFDRDDNAVQFAVDWVKEHGP 560


>pdb|2D6K|A Chain A, Crystal Structure Of Mouse Galectin-9 N-Terminal Crd
           (Crystal Form 1)
 pdb|2D6K|B Chain B, Crystal Structure Of Mouse Galectin-9 N-Terminal Crd
           (Crystal Form 1)
 pdb|2D6L|X Chain X, Crystal Structure Of Mouse Galectin-9 N-Terminal Crd
           (Crystal Form 2)
 pdb|2D6M|A Chain A, Crystal Structure Of Mouse Galectin-9 N-Terminal Crd In
           Complex With Lactose
 pdb|2D6M|B Chain B, Crystal Structure Of Mouse Galectin-9 N-Terminal Crd In
           Complex With Lactose
 pdb|2D6N|A Chain A, Crystal Structure Of Mouse Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine
 pdb|2D6N|B Chain B, Crystal Structure Of Mouse Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine
 pdb|2D6P|A Chain A, Crystal Structure Of Mouse Galectin-9 N-Terminal Crd In
           Complex With T-Antigen
 pdb|2D6P|B Chain B, Crystal Structure Of Mouse Galectin-9 N-Terminal Crd In
           Complex With T-Antigen
          Length = 159

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 84  GNNIEFVVKPTLHDGMNV------GVSWRLEWNKKHVPLGKGFSFHICQVYQGKVF 133
           GN+I F   P   +G  V         W  E  K  +P  KG  F +C + Q   F
Sbjct: 56  GNDIAFHFNPRFEEGGYVVCNTKQNGQWGPEERKMQMPFQKGMPFELCFLVQRSEF 111


>pdb|2D6O|X Chain X, Crystal Structure Of Mouse Galectin-9 N-Terminal Crd In
           Complex With N-Acetyllactosamine Dimer
          Length = 159

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 84  GNNIEFVVKPTLHDGMNV------GVSWRLEWNKKHVPLGKGFSFHICQVYQGKVF 133
           GN+I F   P   +G  V         W  E  K  +P  KG  F +C + Q   F
Sbjct: 56  GNDIAFHFNPRFEEGGYVVCNTKQNGQWGPEERKMQMPFQKGMPFELCFLVQRSEF 111


>pdb|3KYH|C Chain C, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
 pdb|3KYH|D Chain D, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
          Length = 461

 Score = 26.2 bits (56), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 12/55 (21%)

Query: 11  AKNSSSGSGE-----DD-----HRAALETVLKLYSAIKSQSLRELSDIIGDECRC 55
           AKN  +G+ E     DD     H + ++ VL+  S   S SL +L +I+GD  RC
Sbjct: 357 AKNQETGAWEMLRFRDDKLNGNHTSVVQKVLE--SINDSVSLEDLEEIVGDIKRC 409


>pdb|3LFM|A Chain A, Crystal Structure Of The Fat Mass And Obesity Associated
           (Fto) Protein Reveals Basis For Its Substrate
           Specificity
          Length = 495

 Score = 26.2 bits (56), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 7   VPFDAKNSSSGSGEDDHRAALETVLKLYSAIKSQSLRELSDIIGDE 52
           VP+  K S+    E +  AA ET LKL   ++ ++++ L ++   E
Sbjct: 106 VPWPVKGSNIKHTEAEIAAACETFLKLNDYLQIETIQALEELAAKE 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.142    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,730,137
Number of Sequences: 62578
Number of extensions: 188028
Number of successful extensions: 429
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 17
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)