Query 044071
Match_columns 152
No_of_seqs 105 out of 122
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12680 SnoaL_2: SnoaL-like d 99.6 3.8E-15 8.2E-20 101.3 9.0 96 30-133 1-100 (102)
2 TIGR02096 conserved hypothetic 99.5 1.3E-13 2.8E-18 99.6 10.1 107 28-142 2-120 (129)
3 cd00781 ketosteroid_isomerase 99.4 1.1E-12 2.5E-17 94.2 9.0 109 25-140 4-114 (122)
4 PF07366 SnoaL: SnoaL-like pol 99.4 3.3E-12 7.1E-17 92.7 8.8 98 29-133 2-111 (126)
5 PRK08241 RNA polymerase factor 99.2 3.6E-10 7.9E-15 95.1 11.8 111 24-143 214-325 (339)
6 TIGR02960 SigX5 RNA polymerase 99.0 4.8E-09 1E-13 87.5 10.7 109 25-143 205-315 (324)
7 PRK09636 RNA polymerase sigma 98.6 1.2E-06 2.6E-11 72.8 13.4 115 25-151 172-290 (293)
8 TIGR02246 conserved hypothetic 98.6 3.6E-06 7.9E-11 60.0 13.2 67 25-94 5-73 (128)
9 COG3631 Ketosteroid isomerase- 98.6 5.2E-07 1.1E-11 68.2 8.9 114 25-147 5-127 (133)
10 PF13474 SnoaL_3: SnoaL-like d 98.5 6.2E-06 1.3E-10 58.0 12.1 105 27-139 2-116 (121)
11 PF07858 LEH: Limonene-1,2-epo 98.4 1.4E-06 3E-11 65.4 8.0 106 25-140 2-113 (125)
12 COG4319 Ketosteroid isomerase 98.3 3.8E-05 8.2E-10 58.5 12.6 82 28-112 10-97 (137)
13 cd00531 NTF2_like Nuclear tran 98.2 3.1E-05 6.7E-10 53.1 11.1 108 27-135 2-117 (124)
14 PF10184 DUF2358: Uncharacteri 98.1 5.7E-05 1.2E-09 55.1 10.8 96 26-132 3-110 (113)
15 PF14534 DUF4440: Domain of un 98.0 3.9E-05 8.4E-10 52.4 7.8 80 27-111 2-83 (107)
16 TIGR02957 SigX4 RNA polymerase 97.7 0.00075 1.6E-08 55.9 12.4 104 26-143 166-274 (281)
17 PF02136 NTF2: Nuclear transpo 97.7 0.00042 9.1E-09 49.3 8.4 103 27-135 3-112 (118)
18 PRK09635 sigI RNA polymerase s 97.6 0.0012 2.7E-08 55.3 12.2 102 25-143 175-277 (290)
19 PF13577 SnoaL_4: SnoaL-like d 97.5 0.0045 9.8E-08 43.8 11.6 85 26-111 9-94 (127)
20 COG5485 Predicted ester cyclas 97.0 0.0042 9.1E-08 46.7 7.4 79 20-108 4-82 (131)
21 PF12893 Lumazine_bd_2: Putati 96.8 0.039 8.5E-07 39.5 11.0 103 25-135 5-111 (116)
22 PF08332 CaMKII_AD: Calcium/ca 96.7 0.0074 1.6E-07 45.4 6.7 68 25-93 4-71 (128)
23 COG4922 Uncharacterized protei 96.4 0.051 1.1E-06 40.6 9.5 99 27-133 8-107 (129)
24 PF07080 DUF1348: Protein of u 95.9 0.1 2.2E-06 39.9 9.1 82 25-111 11-92 (143)
25 cd00780 NTF2 Nuclear transport 95.9 0.21 4.6E-06 35.9 10.6 60 27-93 7-66 (119)
26 COG4538 Uncharacterized conser 95.2 0.39 8.5E-06 35.0 9.8 100 25-133 4-105 (112)
27 COG4308 LimA Limonene-1,2-epox 94.9 0.07 1.5E-06 40.1 5.2 108 25-139 7-115 (130)
28 PF12870 Lumazine_bd: Lumazine 93.7 0.55 1.2E-05 32.1 7.6 80 25-111 8-91 (111)
29 COG4875 Uncharacterized protei 93.5 1.3 2.8E-05 33.8 9.5 58 25-84 38-95 (156)
30 PF05223 MecA_N: NTF2-like N-t 93.4 0.64 1.4E-05 33.6 7.8 94 26-131 3-100 (118)
31 cd00667 ring_hydroxylating_dio 86.0 7.6 0.00017 29.0 8.4 81 26-106 6-108 (160)
32 PF11533 DUF3225: Protein of u 82.2 2 4.4E-05 32.4 3.6 48 27-78 13-62 (125)
33 COG3558 Uncharacterized protei 74.2 2.2 4.7E-05 32.4 1.8 82 24-111 12-94 (154)
34 PLN02382 probable sucrose-phos 72.1 52 0.0011 29.0 10.2 69 31-106 291-373 (413)
35 PF06020 Roughex: Drosophila r 71.9 4.1 8.9E-05 35.0 3.1 48 25-80 10-58 (334)
36 KOG1332 Vesicle coat complex C 52.1 23 0.00049 30.1 4.0 62 70-136 16-86 (299)
37 KOG4457 Uncharacterized conser 49.4 40 0.00087 27.0 4.8 106 25-135 30-163 (202)
38 KOG0116 RasGAP SH3 binding pro 41.9 1.2E+02 0.0026 27.3 7.2 101 27-141 18-137 (419)
39 PF11453 DUF2950: Protein of u 41.2 63 0.0014 27.4 5.0 52 25-81 6-57 (271)
40 COG4460 Uncharacterized protei 40.7 1.1E+02 0.0023 23.0 5.6 58 29-94 15-75 (130)
41 PF04280 Tim44: Tim44-like dom 40.1 17 0.00036 26.6 1.3 28 26-53 24-51 (147)
42 KOG0635 Adenosine 5'-phosphosu 39.8 44 0.00095 26.7 3.7 68 1-76 57-125 (207)
43 KOG2104 Nuclear transport fact 37.4 58 0.0013 24.5 3.8 48 26-79 10-58 (126)
44 PF15411 PH_10: Pleckstrin hom 37.1 26 0.00055 25.7 1.9 31 118-152 56-86 (116)
45 COG2964 Uncharacterized protei 35.8 89 0.0019 25.7 5.0 46 70-115 8-57 (220)
46 KOG1559 Gamma-glutamyl hydrola 34.3 73 0.0016 27.2 4.4 73 44-117 202-283 (340)
47 PF08348 PAS_6: YheO-like PAS 34.2 1.1E+02 0.0024 22.3 4.9 34 81-114 14-47 (118)
48 KOG4353 RNA export factor NXT1 34.0 78 0.0017 24.2 4.1 47 27-78 17-63 (139)
49 PF12971 NAGLU_N: Alpha-N-acet 33.6 1.4E+02 0.0029 20.5 5.1 18 118-135 29-47 (86)
50 PF08869 XisI: XisI protein; 33.5 1.9E+02 0.0042 21.2 6.5 66 72-142 11-76 (111)
51 PHA03326 nuclear egress membra 27.6 2.3E+02 0.0049 24.1 6.2 71 67-149 53-125 (275)
52 COG2071 Predicted glutamine am 27.6 62 0.0013 27.1 2.8 43 71-113 172-223 (243)
53 PF09211 DUF1958: Domain of un 25.3 62 0.0013 21.7 2.0 27 123-149 34-60 (65)
54 PTZ00356 peptidyl-prolyl cis-t 23.7 1.2E+02 0.0027 21.5 3.6 29 24-52 35-65 (115)
55 PF04059 RRM_2: RNA recognitio 23.1 73 0.0016 22.7 2.2 45 25-77 53-97 (97)
56 KOG4660 Protein Mei2, essentia 22.8 71 0.0015 29.7 2.5 46 27-80 441-486 (549)
57 PF07961 MBA1: MBA1-like prote 22.7 87 0.0019 25.9 2.8 28 25-52 75-102 (235)
58 PF06226 DUF1007: Protein of u 21.6 1.7E+02 0.0038 23.2 4.4 36 107-143 92-127 (212)
59 PF02946 GTF2I: GTF2I-like rep 21.5 2.1E+02 0.0046 19.7 4.1 55 33-92 13-74 (76)
60 PF10429 Mtr2: Nuclear pore RN 20.9 1.1E+02 0.0024 24.1 3.0 41 25-65 5-50 (166)
61 COG5562 Phage envelope protein 20.5 1.2E+02 0.0026 23.2 3.0 23 99-127 99-122 (137)
62 PF10791 F1F0-ATPsyn_F: Mitoch 20.4 92 0.002 22.4 2.2 40 2-44 7-49 (95)
No 1
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=99.61 E-value=3.8e-15 Score=101.31 Aligned_cols=96 Identities=20% Similarity=0.396 Sum_probs=83.3
Q ss_pred HHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcEEEEEEEEEe
Q 044071 30 VLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGVSWRLEW 109 (152)
Q Consensus 30 v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~v~W~lew 109 (152)
|++||+|+|++|++.+.++|++||+++ + . ..++.|++++.++|+.++++. ...++.+.+...+|..+.+.|++..
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~--~-~-~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gd~v~~~~~~~~ 75 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFH--D-P-GGTLRGREAIREFFEEFFESF-PDIRFEIHDIFADGDRVVVEWTVTG 75 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEE--E-T-TSEEESHHHHHHHHHHHHHHE-EEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEE--e-C-CCcccCHHHHHHHHHHHHhcC-CceEEEEEEEEEcCCEEEEEEEEEE
Confidence 689999999999999999999997633 2 2 445799999999999999988 7999999999999999999999986
Q ss_pred ----cccccCCCCceEEEEEeeeCCeEE
Q 044071 110 ----NKKHVPLGKGFSFHICQVYQGKVF 133 (152)
Q Consensus 110 ----~~~~lp~~rGcSf~~~~~~~gki~ 133 (152)
.++++.. +||+++++ .+|||+
T Consensus 76 ~~~~~g~~~~~-~~~~~~~~--~dgkI~ 100 (102)
T PF12680_consen 76 TTPPTGQPISF-RGCSVFRF--EDGKIV 100 (102)
T ss_dssp EETTTSCEEEE-EEEEEEEE--ETTEEE
T ss_pred EEcCCCCEEEE-EEEEEEEE--ECCEEE
Confidence 5666666 99999999 559975
No 2
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.52 E-value=1.3e-13 Score=99.64 Aligned_cols=107 Identities=15% Similarity=0.233 Sum_probs=83.8
Q ss_pred HHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCc-EEEEEEE
Q 044071 28 ETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGM-NVGVSWR 106 (152)
Q Consensus 28 ~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~-~~~v~W~ 106 (152)
+++++||+|++++|++.+.++|++|++ +.+.....|..|++++.++|+.+++.+ +++++++......+. .+.+.|+
T Consensus 2 ~iv~~~~~a~~~~d~~~~~~~~~~d~~--~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~v~~~~~ 78 (129)
T TIGR02096 2 ELAQHWIEAFNRGDMDAVLALLAEDVL--YDDNQGGRVLGGKAQLARFLAPYRTAF-PDLLVDVVVCRNDEGVRVAAEWT 78 (129)
T ss_pred HHHHHHHHHHHCCCHHHHHHhcCCCeE--EEcCCCCcEeccHHHHHHHHHHHHHhC-chhhceeEEEEecCCcEEEEEEE
Confidence 468899999999999999999999975 445444567789999999999999998 689999988654444 8888999
Q ss_pred EEecc-----------cccCCCCceEEEEEeeeCCeEEEEeeeeeee
Q 044071 107 LEWNK-----------KHVPLGKGFSFHICQVYQGKVFIKNVEMFME 142 (152)
Q Consensus 107 lew~~-----------~~lp~~rGcSf~~~~~~~gki~i~~~~~~~e 142 (152)
++-.+ +++.. +|+++++++ +|||+ ..++...
T Consensus 79 ~~g~~~g~~~g~~~~g~~~~~-~~~~~~~~~--~gkI~--~~~~y~D 120 (129)
T TIGR02096 79 VHGTYRTAFLGLPASGKTYSI-RGVTFFVFD--DGKIK--RETTYYN 120 (129)
T ss_pred EeeeeccccCCCCCCCCEEEe-eeeEEEEEe--CCEEE--EEEEEec
Confidence 87543 33333 999999995 59944 4465543
No 3
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.42 E-value=1.1e-12 Score=94.17 Aligned_cols=109 Identities=12% Similarity=0.247 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcEEEEE
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGVS 104 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~v~ 104 (152)
...+.+++||+|+|++|++.+.+||++||+++ +-....|++|++++.++|.++.+.. ..+++.+..+...|..+.+.
T Consensus 4 ~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~~--~p~~~~~~~G~~~i~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~ 80 (122)
T cd00781 4 EMKAAVQRYVEAVNAGDPEGIVALFADDATVE--DPVGSPPRSGRAAIAAFYAQSLGGA-KRLELTGPVRASHGGEAAFA 80 (122)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHcCCCeEEe--CCCCCCCccCHHHHHHHHHHHhccC-ceEEecCceeeecCCEEEEE
Confidence 45778899999999999999999999998643 3223457899999999999998765 56777666655555666666
Q ss_pred EE--EEecccccCCCCceEEEEEeeeCCeEEEEeeeee
Q 044071 105 WR--LEWNKKHVPLGKGFSFHICQVYQGKVFIKNVEMF 140 (152)
Q Consensus 105 W~--lew~~~~lp~~rGcSf~~~~~~~gki~i~~~~~~ 140 (152)
|+ ..+.|+++.. +||++|+++. +|| |...+++
T Consensus 81 ~~~~~~~~g~~~~~-~~~~v~~~~~-dGk--I~~~~~y 114 (122)
T cd00781 81 FRVEFEWEGQPCVV-RVIDVMRFDA-DGR--IVSMRAY 114 (122)
T ss_pred EEEEEEeCCceEEE-EEEEEEEECC-Ccc--ChHHHHh
Confidence 65 4555655655 8999999943 277 4444544
No 4
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=99.37 E-value=3.3e-12 Score=92.73 Aligned_cols=98 Identities=18% Similarity=0.358 Sum_probs=79.0
Q ss_pred HHHHHH-HHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcEEEEEEEE
Q 044071 29 TVLKLY-SAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGVSWRL 107 (152)
Q Consensus 29 ~v~~fY-~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~v~W~l 107 (152)
+++++| +++|++|++.+.+++++||+++.. ..++..|++++.++++.+.... ++.++.|+++..+|..+.++|++
T Consensus 2 ~v~~~~~~~~n~~d~~~~~~~~~~d~~~~~~---~~~~~~G~~~~~~~~~~~~~af-PD~~~~i~~~~~~gd~v~~~~~~ 77 (126)
T PF07366_consen 2 IVRRFYEEVWNRGDLDALDELVAPDVVFHDP---GPGPPVGREGFKEFLKELRAAF-PDLRFEIEDVVAEGDRVAVRWTF 77 (126)
T ss_dssp HHHHHHHHHHHTT-GCHHHGTEEEEEEEEGC---TTTEEEHHHHHHHHHHHHHHHS-TTTEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHhCCCHHHHHHhcCCCEEEEec---CCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEEEEEECCEEEEEEEE
Confidence 455666 566999999999999999864421 1277899999999999999999 79999999999889999999999
Q ss_pred Eeccc-----------ccCCCCceEEEEEeeeCCeEE
Q 044071 108 EWNKK-----------HVPLGKGFSFHICQVYQGKVF 133 (152)
Q Consensus 108 ew~~~-----------~lp~~rGcSf~~~~~~~gki~ 133 (152)
+-.|. ++.. +|+++|++ .+|||+
T Consensus 78 ~Gth~g~~~g~~ptgk~v~~-~~~~~~~~--~~gkI~ 111 (126)
T PF07366_consen 78 TGTHTGEFMGIPPTGKPVEF-RGMSIFRF--EDGKIV 111 (126)
T ss_dssp EEEESSEBTTBE-TTEEEEE-EEEEEEEE--ETTEEE
T ss_pred EEeecCCcCCcCCCCCEEEE-EEEEEEEE--ECCEEE
Confidence 77653 2322 99999999 459976
No 5
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=99.17 E-value=3.6e-10 Score=95.13 Aligned_cols=111 Identities=12% Similarity=0.166 Sum_probs=82.0
Q ss_pred chHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcC-CceEEEEceeeecCcEEE
Q 044071 24 RAALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLG-NNIEFVVKPTLHDGMNVG 102 (152)
Q Consensus 24 ~~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~-~~~rFvI~~~~~~g~~~~ 102 (152)
....+++.+||+|++++|++.|.+|+++||+|+ +..+..|+.|+++|.+||++++...+ ..+++ .....+|..+.
T Consensus 214 ~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~--~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~--~~~~~~g~~v~ 289 (339)
T PRK08241 214 PEERALLARYVAAFEAYDVDALVALLTEDATWS--MPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRL--VPTRANGQPAF 289 (339)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEE--cCCCCCcccCHHHHHHHHHhhccccCCCceEE--EEeecCCCeEE
Confidence 466888999999999999999999999998754 44667779999999999999864432 34444 33355666666
Q ss_pred EEEEEEecccccCCCCceEEEEEeeeCCeEEEEeeeeeeec
Q 044071 103 VSWRLEWNKKHVPLGKGFSFHICQVYQGKVFIKNVEMFMEP 143 (152)
Q Consensus 103 v~W~lew~~~~lp~~rGcSf~~~~~~~gki~i~~~~~~~e~ 143 (152)
+.+.....|+.+.. ++|++|+++ +|| |..++++..|
T Consensus 290 ~~~~~~~~g~~~~~-~~v~v~~v~--dGk--I~~~~~y~d~ 325 (339)
T PRK08241 290 AQYMRDPDGGGHRP-WALHVLELR--GGR--IAHVTSFLDT 325 (339)
T ss_pred EEEEEcCCCCeeec-ceEEEEEEe--CCE--EEEEEEEcCh
Confidence 65433333444544 899999995 498 5556888777
No 6
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=98.98 E-value=4.8e-09 Score=87.50 Aligned_cols=109 Identities=12% Similarity=0.232 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHH--HHHcCCceEEEEceeeecCcEEE
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYL--IRSLGNNIEFVVKPTLHDGMNVG 102 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l--~~~~~~~~rFvI~~~~~~g~~~~ 102 (152)
...+++.+||+|++++|++.|.+|+++||++ .+-....|+.|+++|..||..+ ...+ ...++ ..+..+|+.+.
T Consensus 205 ~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~--~~p~~~~~~~G~~~v~~~~~~~~~~~~~-~~~~~--~~~~~~g~~~~ 279 (324)
T TIGR02960 205 EEQDLLERYIAAFESYDLDALTALLHEDAIW--EMPPYTLWYQGRPAIVGFIHTVCPGEGA-AGMRL--LPTIANGQPAA 279 (324)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhcCCeEE--EcCCCCcceeCHHHHHHHHHHhcccccC-CceeE--EEeeecCCceE
Confidence 4578899999999999999999999999864 3446678899999999999998 4434 44555 44447788887
Q ss_pred EEEEEEecccccCCCCceEEEEEeeeCCeEEEEeeeeeeec
Q 044071 103 VSWRLEWNKKHVPLGKGFSFHICQVYQGKVFIKNVEMFMEP 143 (152)
Q Consensus 103 v~W~lew~~~~lp~~rGcSf~~~~~~~gki~i~~~~~~~e~ 143 (152)
+.|...-.++.+.. .||.+++++ +||| ..++.++.+
T Consensus 280 v~~~~~~~~~~~~~-~~v~~~~~~--dGkI--~~~~~~~~~ 315 (324)
T TIGR02960 280 AMYMRRPDAERHTA-FQLHVLEIR--GGRI--THVTAFLDG 315 (324)
T ss_pred EEEEEcCCCCeeee-eEEEEEEEc--CCcE--EEEEEEcCC
Confidence 77753333444433 899999994 5984 445776654
No 7
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=98.61 E-value=1.2e-06 Score=72.80 Aligned_cols=115 Identities=21% Similarity=0.202 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCccee-cCc---eeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcE
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCV-CNF---FSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMN 100 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~-~~d---~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~ 100 (152)
...+++.+|++|++++|++.|.+|+++|++++ .+- -....|+.|+++|.+||..+....+....+.+..+..+|+-
T Consensus 172 ~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~~~~vnG~~ 251 (293)
T PRK09636 172 EGAELVEAFFAALASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVRLALVNGLP 251 (293)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEEEEEECCce
Confidence 34778999999999999999999999999866 221 13357789999999999999876643233444445555554
Q ss_pred EEEEEEEEecccccCCCCceEEEEEeeeCCeEEEEeeeeeeecCCCCCCCC
Q 044071 101 VGVSWRLEWNKKHVPLGKGFSFHICQVYQGKVFIKNVEMFMEPLLHIGPFR 151 (152)
Q Consensus 101 ~~v~W~lew~~~~lp~~rGcSf~~~~~~~gki~i~~~~~~~e~~~k~g~~~ 151 (152)
+.+. .. . ++..+.+.++..+|| |..+..++-| -|+..++
T Consensus 252 a~~~-~~-~-------~~~~~~~~~~~~~g~--I~~i~~~~~p-~kl~~~~ 290 (293)
T PRK09636 252 GFVT-AE-A-------DGEPQTTALEVEDGK--IVAIYDVRNP-DKLTHLP 290 (293)
T ss_pred eEEE-Ee-C-------CceEEEEEEEEECCE--EEEEEEEcCH-HHhcCCC
Confidence 4333 21 1 122444445556787 5555666644 4544443
No 8
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=98.57 E-value=3.6e-06 Score=60.00 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCc--eEEEEcee
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNN--IEFVVKPT 94 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~--~rFvI~~~ 94 (152)
...+++.++++|+|++|++.+.++|++|+++.+ ....++.|+++|.++|+.++...+.. +++.+..+
T Consensus 5 ~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~---~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i 73 (128)
T TIGR02246 5 AIRALVATWEAAWAAGDAEGFADLFTPDGVFVT---VPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEV 73 (128)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhCCCceEEC---CCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEE
Confidence 446778899999999999999999999986431 12236799999999999998776544 55554444
No 9
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=98.56 E-value=5.2e-07 Score=68.21 Aligned_cols=114 Identities=17% Similarity=0.194 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCC-----cccHHHHHHHHHHHHHHcCCceEEEEceeeecCc
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQP-----LQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGM 99 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dP-----f~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~ 99 (152)
++.+.|+++|+|+.++|++.+.+|+++|.+ ++ +...+| ..|++...++|..+-+.. ..++|++..+..+|.
T Consensus 5 ~~~~~v~~~f~a~~~GD~~~~~~l~a~D~v--~~-~p~~~~~~~~~~~g~~~~~~~~~~~~r~~-~~~~~~~~~~~~~gD 80 (133)
T COG3631 5 DNTDLVRRYFAALSRGDLDGLLALLAEDVV--WE-VPGTPPLSGTFRGGVAIRRDVFALLPRLI-EDGRFTVETVYVSGD 80 (133)
T ss_pred hhhhHHHHHHHHHhcCCHHHHHhhccCceE--EE-eeCCCCCccccccchhhhhHHhhhChhhc-ccccccceEEEEcCC
Confidence 668999999999999999999999999955 44 444444 367887889998777777 799999999876666
Q ss_pred EEE-EEEEE---EecccccCCCCceEEEEEeeeCCeEEEEeeeeeeecCCCC
Q 044071 100 NVG-VSWRL---EWNKKHVPLGKGFSFHICQVYQGKVFIKNVEMFMEPLLHI 147 (152)
Q Consensus 100 ~~~-v~W~l---ew~~~~lp~~rGcSf~~~~~~~gki~i~~~~~~~e~~~k~ 147 (152)
.+. +.|.- ...|+++.. +=+.++++ .+||| ...+.++.++.-.
T Consensus 81 ~~~~v~~~~~~~~~~G~~~~~-~~~~v~~v--rdGrI--~~~~~y~D~~~~~ 127 (133)
T COG3631 81 PVGAVFRTRGRVSRTGKPYEN-RYAFVIRV--RDGRI--TRYREYVDTLALA 127 (133)
T ss_pred ceEEEEEecCcccccCceeec-ceEEEEEE--eCCEE--EEEEEEechHhHH
Confidence 665 56664 345777755 88999999 55995 4468888776543
No 10
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=98.47 E-value=6.2e-06 Score=57.98 Aligned_cols=105 Identities=12% Similarity=0.132 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCC---cccHHHHHHHHHHHHHHcCCceEEEEcee--eecCcEE
Q 044071 27 LETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQP---LQGKKQVLDFFTYLIRSLGNNIEFVVKPT--LHDGMNV 101 (152)
Q Consensus 27 ~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dP---f~G~~av~~~F~~l~~~~~~~~rFvI~~~--~~~g~~~ 101 (152)
...+.++++|++++|++.+.+++++|.++ .-++| +.|++++.+||++.++.+ ..+++.+.+. ...+..+
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~a 75 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVF-----FGTGPGEIWRGREAIRAYFERDFESF-RPISIEFEDVQVSVSGDVA 75 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEE-----EETTSSSEEESHHHHHHHHHHHHHTH-SEEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEE-----EcCCCCceECCHHHHHHHHHHHhhhC-ceEEEEEEEEEEEECCCEE
Confidence 46788999999999999999999999531 11223 479999999999999988 7999998874 4667777
Q ss_pred EEEEEEEecc----cccCC-CCceEEEEEeeeCCeEEEEeeee
Q 044071 102 GVSWRLEWNK----KHVPL-GKGFSFHICQVYQGKVFIKNVEM 139 (152)
Q Consensus 102 ~v~W~lew~~----~~lp~-~rGcSf~~~~~~~gki~i~~~~~ 139 (152)
.+.+.+++.. ..... +|....|+- .+|.-.|...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~r~t~v~~k--~~~~Wki~h~H~ 116 (121)
T PF13474_consen 76 VVTGEFRLRFRNDGEEIEMRGRATFVFRK--EDGGWKIVHIHW 116 (121)
T ss_dssp EEEEEEEEEEECTTCEEEEEEEEEEEEEE--ETTEEEEEEEEE
T ss_pred EEEEEEEEEEecCCccceeeEEEEEEEEE--ECCEEEEEEEEe
Confidence 7776666642 22211 144444444 456666654443
No 11
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=98.42 E-value=1.4e-06 Score=65.38 Aligned_cols=106 Identities=17% Similarity=0.304 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHhccCCHh-HHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcEEEE
Q 044071 25 AALETVLKLYSAIKSQSLR-ELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGV 103 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~-~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~v 103 (152)
++.++|++|.+|+...|++ ++..++++|++ |.+..++ |.+|++++.++++.+.... ..+.|.|..+..+|..| +
T Consensus 2 ~~~~vV~~F~~a~~~~D~~~a~~~~~~~d~v--y~Nvplp-~i~G~~~~~~~l~~~~~~~-~~~e~~i~~iaadg~~V-l 76 (125)
T PF07858_consen 2 TPEEVVRAFLAALEDRDVDAALASLFDDDAV--YHNVPLP-PIRGRDAIRAFLRGFLDSL-SGFEFDIHRIAADGDVV-L 76 (125)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHCEECC-E--EEETTTE-EEESHHHHHHHHHCCHCCC-EEEEEEEEEEEEETTEE-E
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHhcCCCcE--EEeCCCC-CcccHHHHHHHHHHHhccc-ceeEEEEEEEeecCCEE-E
Confidence 4588999999999999976 46778888865 5554444 6899999999999996544 57777777777777554 5
Q ss_pred EEEEEec----c-cccCCCCceEEEEEeeeCCeEEEEeeeee
Q 044071 104 SWRLEWN----K-KHVPLGKGFSFHICQVYQGKVFIKNVEMF 140 (152)
Q Consensus 104 ~W~lew~----~-~~lp~~rGcSf~~~~~~~gki~i~~~~~~ 140 (152)
+++++.- | .++.+ .=|..|+++ +|||... ||-
T Consensus 77 tER~D~l~~~dG~~~~~~-~V~GvfEv~--dGkI~~W--RDY 113 (125)
T PF07858_consen 77 TERTDVLRFADGPLRIQF-PVCGVFEVR--DGKITLW--RDY 113 (125)
T ss_dssp EEEEEEEEETTTTEEEEE-EEEEEEEEE--TTEEEEE--EEE
T ss_pred EEeEeeeeeecCCeEEEE-EEEEEEEEE--CCEEEEE--ecc
Confidence 6665441 2 33444 668899885 5999988 663
No 12
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=98.26 E-value=3.8e-05 Score=58.54 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=63.5
Q ss_pred HHHHHHHH----HhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEceee--ecCcEE
Q 044071 28 ETVLKLYS----AIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTL--HDGMNV 101 (152)
Q Consensus 28 ~~v~~fY~----A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~--~~g~~~ 101 (152)
+.|++.+. |+|++|++++.+.|++||+.++-. ..+.+|+++++..|+..+..--+.++|.+.+.. +.|..+
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~---~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~a 86 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPP---GLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDVA 86 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCC---CCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCEE
Confidence 44555544 999999999999999998532110 234699999999999999888889999999854 899999
Q ss_pred EEEEEEEeccc
Q 044071 102 GVSWRLEWNKK 112 (152)
Q Consensus 102 ~v~W~lew~~~ 112 (152)
.++=....+++
T Consensus 87 ~~~~~~~~~~~ 97 (137)
T COG4319 87 FVTALLLLTGT 97 (137)
T ss_pred EEEEeeeeecc
Confidence 99555555443
No 13
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.24 E-value=3.1e-05 Score=53.11 Aligned_cols=108 Identities=12% Similarity=0.001 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhccCCHhHHHhhhccCcceecCce-eccCCcccHHHHHHHHHHHHHHcCCceEEEEce-eeecC----cE
Q 044071 27 LETVLKLYSAIKSQSLRELSDIIGDECRCVCNFF-SFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKP-TLHDG----MN 100 (152)
Q Consensus 27 ~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~-~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~-~~~~g----~~ 100 (152)
.+.+.++|.+++.+|.+.|..+|++||++.+... ....+..|+++|.++|+++........++.... +...+ ..
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 4678899999999999999999999986442210 013567999999999988875311233332222 12222 44
Q ss_pred EEEEEEEEeccc--ccCCCCceEEEEEeeeCCeEEEE
Q 044071 101 VGVSWRLEWNKK--HVPLGKGFSFHICQVYQGKVFIK 135 (152)
Q Consensus 101 ~~v~W~lew~~~--~lp~~rGcSf~~~~~~~gki~i~ 135 (152)
..+.|.++..+. .... .|.-.+.+...+|.-.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~w~i~ 117 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVF-AGGQTFVLRPQGGGGKIA 117 (124)
T ss_pred EEEEEEEEEccCCceeEE-EEEEEEEEEEeCCEEEEE
Confidence 555888888764 3333 555555555445555555
No 14
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=98.12 E-value=5.7e-05 Score=55.08 Aligned_cols=96 Identities=19% Similarity=0.286 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCc---ccHHHHHHH---HHHHHHHcCCceEEEEceeeecCc
Q 044071 26 ALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPL---QGKKQVLDF---FTYLIRSLGNNIEFVVKPTLHDGM 99 (152)
Q Consensus 26 a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf---~G~~av~~~---F~~l~~~~~~~~rFvI~~~~~~g~ 99 (152)
+.+++++=|..+=.++++ .++|++|| .|.||. +|++.-+.. .+-+....-.+++++|......+.
T Consensus 3 ~~~~Lr~D~~~~f~~~~~--~~iY~~dv-------~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~ 73 (113)
T PF10184_consen 3 VIRTLREDLPRFFTGDLD--YSIYDEDV-------VFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGE 73 (113)
T ss_pred HHHHHHHHHHHHhcCCCC--hhhcCCCe-------EEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCC
Confidence 344554444443255555 46999995 688885 888777666 333333122689999998654433
Q ss_pred -EEEEEEEEEecccccCCC-----CceEEEEEeeeCCeE
Q 044071 100 -NVGVSWRLEWNKKHVPLG-----KGFSFHICQVYQGKV 132 (152)
Q Consensus 100 -~~~v~W~lew~~~~lp~~-----rGcSf~~~~~~~gki 132 (152)
.+.++|+|.+ -+++|+. .|.|.|+++.. |+|
T Consensus 74 ~~I~~rW~~~g-~~~l~w~p~~~~~G~S~~~ln~~-g~I 110 (113)
T PF10184_consen 74 DTIRARWRLRG-VPRLPWRPRISFDGTSTYTLNSD-GLI 110 (113)
T ss_pred CEEEEEEEEEE-EeCCCcCCcEEEEEEEEEEECCC-CcE
Confidence 8999999966 4566654 89999999885 554
No 15
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=98.02 E-value=3.9e-05 Score=52.37 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcEEEE--E
Q 044071 27 LETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGV--S 104 (152)
Q Consensus 27 ~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~v--~ 104 (152)
.++..++.+|++++|++.+.++|++|++++ .-.++..|++++++.|..-.... ...++....+...|..+.+ .
T Consensus 2 ~a~~~~~~~A~~~~D~~~~~~~~~~d~~~~----~~~g~~~~~~~~l~~~~~~~~~~-~~~~~~~~~v~~~gd~a~~~~~ 76 (107)
T PF14534_consen 2 RALEEQYEDAFNAGDIDALASLYADDFVFV----GPGGTILGKEAILAAFKSGFARF-SSIKFEDVEVRVLGDTAVVRGR 76 (107)
T ss_dssp HHHHHHHHHHHHTTHHHHHHTTEEEEEEEE----ETTSEEEEHHHHHHHHHHHCEEE-EEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHhhhCCCEEEE----CCCCCEeCHHHHHHHHhhccCCC-ceEEEEEEEEEEECCEEEEEEE
Confidence 467789999999999999999999996532 11234579999999997743222 4555555445444666655 7
Q ss_pred EEEEecc
Q 044071 105 WRLEWNK 111 (152)
Q Consensus 105 W~lew~~ 111 (152)
|++++..
T Consensus 77 ~~~~~~~ 83 (107)
T PF14534_consen 77 WTFTWRG 83 (107)
T ss_dssp EEEEETT
T ss_pred EEEEEec
Confidence 8887754
No 16
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=97.74 E-value=0.00075 Score=55.95 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhccCCHhHHHhhhccCcceecCc-----eeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcE
Q 044071 26 ALETVLKLYSAIKSQSLRELSDIIGDECRCVCNF-----FSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMN 100 (152)
Q Consensus 26 a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d-----~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~ 100 (152)
...++.+|-+|++++|++.|.+|+++|++.. -| -+...|+.|++.|..||..++...+...+++. +..+|.-
T Consensus 166 ~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~-~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~~~~~~~~~--~~vnG~p 242 (281)
T TIGR02957 166 SRQLLERFVEAAQTGDLDGLLELLAEDVVLY-GDGGGKVRAALRPIYGADRVARFFFGLVRRLGPGGRVDP--VDVNGQP 242 (281)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhceEEE-ecCCCcCCCCCcccccHHHHHHHHHHHhcccCCCceEEE--EEECCCc
Confidence 4678999999999999999999999998643 22 34567789999999999888754433333333 3334443
Q ss_pred EEEEEEEEecccccCCCCceEEEEEeeeCCeEEEEeeeeeeec
Q 044071 101 VGVSWRLEWNKKHVPLGKGFSFHICQVYQGKVFIKNVEMFMEP 143 (152)
Q Consensus 101 ~~v~W~lew~~~~lp~~rGcSf~~~~~~~gki~i~~~~~~~e~ 143 (152)
+.+.- ..+. + .++-.+.+ .+|| |..+..+.-|
T Consensus 243 ~~~~~---~~~~--~--~~~~~~~~--~~g~--I~~i~~~~nP 274 (281)
T TIGR02957 243 AVLVR---IDGK--L--AYVVTFAI--EGGG--IQNIYIVRNP 274 (281)
T ss_pred eEEEE---eCCc--E--EEEEEEEE--ECCE--EEEEEEEcCH
Confidence 33311 1121 1 23333444 5687 4545555554
No 17
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=97.65 E-value=0.00042 Score=49.35 Aligned_cols=103 Identities=14% Similarity=0.191 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEcee--e---ecCc--
Q 044071 27 LETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPT--L---HDGM-- 99 (152)
Q Consensus 27 ~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~--~---~~g~-- 99 (152)
..-++++|++++++|.+.|..+|++|+... ......+++|+++|.++|..+-.. .+++.|... . ....
T Consensus 3 ~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~--~~~~~~~~~G~~~I~~~~~~l~~~---~~~~~i~~~d~qp~~~~~~~i 77 (118)
T PF02136_consen 3 NSFVQQYYQLFDSGDREGLHKLYHDDASFL--TWNGNRPVVGREAIQEFFQSLPAT---GVQHRITSVDCQPSPSSDGSI 77 (118)
T ss_dssp HHHHHHHHHHHHHTHGGGGGGGEEEEEEEE--EETTECEEESHHHHHHHHHHHTTS---SEEEEEEEEEEEEEEECCSEE
T ss_pred HHHHHHHHHHHccCCHHHHHHHHcCCCeee--cCCCchhhhhHHHHHHHHhcCCCc---ccEEEecccccccccccCCcE
Confidence 456789999999999999999998776432 211123689999999999888742 247777653 2 1233
Q ss_pred EEEEEEEEEecccccCCCCceEEEEEeeeCCeEEEE
Q 044071 100 NVGVSWRLEWNKKHVPLGKGFSFHICQVYQGKVFIK 135 (152)
Q Consensus 100 ~~~v~W~lew~~~~lp~~rGcSf~~~~~~~gki~i~ 135 (152)
-+.|...++..+..-+. +=.--|.+...++...|.
T Consensus 78 ~i~v~G~~~~~~~~~~~-~F~q~FvL~~~~~~~~I~ 112 (118)
T PF02136_consen 78 LITVTGQFKEDDNPNPR-RFSQTFVLVPQNNGYFIA 112 (118)
T ss_dssp EEEEEEEEEETTSEEEE-EEEEEEEEEEETTEEEEE
T ss_pred EEEEEeEEEecCCCccc-EEEEEEEEEEcCCEEEEE
Confidence 33445555554432111 112223344444566665
No 18
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=97.63 E-value=0.0012 Score=55.30 Aligned_cols=102 Identities=9% Similarity=0.007 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCce-eccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcEEEE
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFF-SFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGV 103 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~-~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~v 103 (152)
...+++.+|-+|++.+|++.|.+|+++|+. .+.. ....|+.|.+.|..||..... . ...++ ..+..+|+-+.+
T Consensus 175 ~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~--~~~~~~~~~~~~G~~~v~~~~~~~~~-~-~~~~~--~~~~~ng~p~~~ 248 (290)
T PRK09635 175 QHRVVTRAFIEACSNGDLDTLLEVLDPGVA--GEIDARKGVVVVGADRVGPTILRHWS-H-PATVL--VAQPVCGQPAVL 248 (290)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHhhhhhc--CCCcCCCCccccCHHHHHHHHHHhhc-c-CceEE--EEeeeCCCceEE
Confidence 346789999999999999999999999974 3433 557788999999999987643 2 23333 334445555444
Q ss_pred EEEEEecccccCCCCceEEEEEeeeCCeEEEEeeeeeeec
Q 044071 104 SWRLEWNKKHVPLGKGFSFHICQVYQGKVFIKNVEMFMEP 143 (152)
Q Consensus 104 ~W~lew~~~~lp~~rGcSf~~~~~~~gki~i~~~~~~~e~ 143 (152)
... .++-.++..++..+||| ..+..+..|
T Consensus 249 ~~~---------~~~~~~~~~~~~~~~~I--~~i~~~~np 277 (290)
T PRK09635 249 AFV---------NRALAGVLALSIEAGKI--TKIHVLVQP 277 (290)
T ss_pred EEe---------CCceEEEEEEEEECCEE--EEEEEEcCH
Confidence 332 11333444445567874 444555544
No 19
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=97.46 E-value=0.0045 Score=43.76 Aligned_cols=85 Identities=13% Similarity=0.186 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEce-eeecCcEEEEE
Q 044071 26 ALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKP-TLHDGMNVGVS 104 (152)
Q Consensus 26 a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~-~~~~g~~~~v~ 104 (152)
..+.+.+|..+++.++.+.+.+++++|+++.+.... ...+.|+++|.++++..........+..... +..+|..+.++
T Consensus 9 I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~-~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dgd~A~~~ 87 (127)
T PF13577_consen 9 IRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFG-FGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDGDTATVR 87 (127)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTC-EEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCcc-ccccCCHHHHHHHHHHhcccccceeEEccceEEEEcCCEEEEE
Confidence 456778899999999999999999999873311100 2457999999999999887664444444444 23578889999
Q ss_pred EEEEecc
Q 044071 105 WRLEWNK 111 (152)
Q Consensus 105 W~lew~~ 111 (152)
|.+...+
T Consensus 88 ~~~~~~~ 94 (127)
T PF13577_consen 88 SYVLATH 94 (127)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9887653
No 20
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=96.99 E-value=0.0042 Score=46.73 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=62.7
Q ss_pred CCCcchHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCc
Q 044071 20 EDDHRAALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGM 99 (152)
Q Consensus 20 ~~~~~~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~ 99 (152)
|+| -+.++.++||+.+|+++.+.|...++.+ +-..+--+|+++-.++..+.+... ++++|+|+....+|.
T Consensus 4 ed~--~~~~~y~Ay~d~ln~q~~~~l~~fv~~~-------v~~ng~~~glsgyr~ml~~df~ai-Pdl~f~ie~lvae~~ 73 (131)
T COG5485 4 EDN--LAIDRYRAYLDCLNRQAWDELGSFVDGN-------VMHNGRLQGLSGYREMLVRDFSAI-PDLSFEIERLVAEGD 73 (131)
T ss_pred ccc--hhHHHHHHHHHhhhhhhhhhcccCCcCe-------eeeCCceechHHHHHHHHhhHhhC-CCcceEEEEEeecCC
Confidence 455 3458999999999999999998777665 344445689999999999999999 799999999776677
Q ss_pred EEEEEEEEE
Q 044071 100 NVGVSWRLE 108 (152)
Q Consensus 100 ~~~v~W~le 108 (152)
.+..+-++.
T Consensus 74 ~vaarl~Fd 82 (131)
T COG5485 74 RVAARLTFD 82 (131)
T ss_pred ceEEEEEEc
Confidence 666665554
No 21
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=96.78 E-value=0.039 Score=39.52 Aligned_cols=103 Identities=12% Similarity=0.022 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCc--ccHHHHHHHHHHHH--HHcCCceEEEEceeeecCcE
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPL--QGKKQVLDFFTYLI--RSLGNNIEFVVKPTLHDGMN 100 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf--~G~~av~~~F~~l~--~~~~~~~rFvI~~~~~~g~~ 100 (152)
....+|..|++++..+|.+.|..++++||... -.. .+++ ..+++..+++..-. ...+..+...|..+..+|..
T Consensus 5 ~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~--~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g~~ 81 (116)
T PF12893_consen 5 AIEATVQDYFDGLYNGDSEKLRSAFHPDARLQ--GVR-KGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDGDV 81 (116)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEE--EEE-TTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEE--EEc-CCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEECCE
Confidence 35678899999999999999999999998532 111 3333 45555555554432 34567889999888777888
Q ss_pred EEEEEEEEecccccCCCCceEEEEEeeeCCeEEEE
Q 044071 101 VGVSWRLEWNKKHVPLGKGFSFHICQVYQGKVFIK 135 (152)
Q Consensus 101 ~~v~W~lew~~~~lp~~rGcSf~~~~~~~gki~i~ 135 (152)
|.+.-.+++.+. .+..+|++-..+|+=.|.
T Consensus 82 A~a~v~~~~~~~-----~~~d~~~L~K~dg~WkIv 111 (116)
T PF12893_consen 82 ASAKVEYEFPGF-----WFVDYFTLVKTDGGWKIV 111 (116)
T ss_dssp EEEEEEEEEETE-----EEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEECCC-----ceEEEEEEEEECCEEEEE
Confidence 888888888632 678888887777865555
No 22
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=96.68 E-value=0.0074 Score=45.42 Aligned_cols=68 Identities=7% Similarity=0.010 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEce
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKP 93 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~ 93 (152)
..++++.++.+||+.+|.++..++|++||.| ++-.+...+..|.+.+..||.++...-+...+-.|..
T Consensus 4 eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av-~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~ 71 (128)
T PF08332_consen 4 EIAALFDRWNDAIQTGDPETYAKLYAPDVAV-FEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILN 71 (128)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHEEEEEEE-EEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHhhhcCCCeeE-eccccCCceecChHHHHHHHhcccccCCCceeeEecC
Confidence 4577889999999999999999999999653 3333455566999999999999998777777666765
No 23
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.41 E-value=0.051 Score=40.63 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=68.2
Q ss_pred HHHHHHHHH-HhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcEEEEEE
Q 044071 27 LETVLKLYS-AIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGVSW 105 (152)
Q Consensus 27 ~~~v~~fY~-A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~v~W 105 (152)
..++.+||. .|+.+.++....++-+.-+.| -+.--.|++.+.+||..+++.-| ..+.-|=-+..+|.=|.|..
T Consensus 8 ~~~v~~~y~~~~~~g~veka~a~~vd~YiQH-----np~vpdGk~~fv~fFt~ffk~~P-~~~~kiVr~iadGdLV~vh~ 81 (129)
T COG4922 8 KQVVIQFYRTLFEAGEVEKADAYLVDRYIQH-----NPMVPDGKDGFVRFFTEFFKEKP-RISTKIVRVIADGDLVTVHY 81 (129)
T ss_pred HHHHHHHHHHHHHCCCHHHhhhhhhhHHHhc-----CCCCCCchHHHHHHHHHHHHhCc-cccceeeEEeccCCEEEEEE
Confidence 456778885 567799999998888542211 11123899999999999998764 44444444568999999999
Q ss_pred EEEecccccCCCCceEEEEEeeeCCeEE
Q 044071 106 RLEWNKKHVPLGKGFSFHICQVYQGKVF 133 (152)
Q Consensus 106 ~lew~~~~lp~~rGcSf~~~~~~~gki~ 133 (152)
|-.|++|.-...--..+||+ ++|||+
T Consensus 82 hqt~~~pg~~~~v~~DtfR~--ddgkiv 107 (129)
T COG4922 82 HQTVSEPGSYTTVTFDTFRI--DDGKIV 107 (129)
T ss_pred eeeeCCCCcceeEEEEEEEe--eCCcee
Confidence 99998853322234556666 558754
No 24
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=95.90 E-value=0.1 Score=39.95 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcEEEEE
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGVS 104 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~v~ 104 (152)
+|...|+..=+|+|.+|.+.++--|++||++.--+ .|. .|+++|.+|+++--+.= .+.+.+=+-=.-.+.++.|+
T Consensus 11 tA~~KVr~AEdaWNsrdP~~ValaYT~Ds~WRNR~-eF~---~GR~~I~~FLtrKW~rE-~~YrLiKELwaf~~nRIAVR 85 (143)
T PF07080_consen 11 TAIQKVRAAEDAWNSRDPEKVALAYTPDSVWRNRD-EFL---TGREEIVAFLTRKWERE-LDYRLIKELWAFTDNRIAVR 85 (143)
T ss_dssp HHHHHHHHHHHHHTTT-HHHHHTTEEEEEEEEETT-EEE----SHHHHHHHHHHHHHHS-EEEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhccccCChhHheeccCCCCcccCcc-ccc---CcHHHHHHHHHHHHHHh-hhhhhHHhhhhccCCeEEEE
Confidence 67889999999999999999999999999865222 333 89999999999877544 45555443334678999999
Q ss_pred EEEEecc
Q 044071 105 WRLEWNK 111 (152)
Q Consensus 105 W~lew~~ 111 (152)
.-.||..
T Consensus 86 F~YE~~d 92 (143)
T PF07080_consen 86 FAYEWHD 92 (143)
T ss_dssp EEEEEE-
T ss_pred EeEEEEc
Confidence 8899965
No 25
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=95.89 E-value=0.21 Score=35.88 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEce
Q 044071 27 LETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKP 93 (152)
Q Consensus 27 ~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~ 93 (152)
..=+++||+.++ .+.+.|..+|+++.....++ ..+..|+++|.+++..+-. ..++..|..
T Consensus 7 ~~Fv~~YY~~l~-~~~~~L~~fY~~~s~~~~~~---~~~~~g~~~I~~~l~~lp~---~~~~~~i~~ 66 (119)
T cd00780 7 KAFVQQYYSIFD-NNREGLHRLYGDTSMLSREG---MKQVTGRDAIVEKLSSLPF---QKTKHKITT 66 (119)
T ss_pred HHHHHHHHHHHh-cCHHHHHhhcCCCcEEEECC---ceEecCHHHHHHHHHhCCC---cceEEEEEE
Confidence 445689999999 77999999999997633332 2457999999998865442 256666654
No 26
>COG4538 Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.39 Score=35.00 Aligned_cols=100 Identities=9% Similarity=0.002 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCc--ccHHHHHHHHHHHHHHcCCceEEEEceeeecCcEEE
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPL--QGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVG 102 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf--~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~ 102 (152)
...+.+++=.+|+|.+|++....-+++||+. ..|+.-. -|.++++.++.+-++. +..+..+-+-..=|..|-
T Consensus 4 e~ed~vq~Ql~AYNa~Dvdaf~a~f~DD~vv----~~f~a~~~~gg~aaira~y~e~FaE--p~~~~~ll~Rv~vGs~Vi 77 (112)
T COG4538 4 EPEDVVQRQLAAYNAGDVDAFAAEFDDDAVV----TTFDALDGDGGTAAIRAAYGEQFAE--PAPEISLLDRVSVGSYVI 77 (112)
T ss_pred chhHHHHHHHHhhccccHHHHHhhcccceEE----EecccccccCcHHHHHHHHHHHhcC--CCccceeeeeEEeccEEe
Confidence 3466788889999999999999999999963 2233222 6899999999888865 234443333211122221
Q ss_pred EEEEEEecccccCCCCceEEEEEeeeCCeEE
Q 044071 103 VSWRLEWNKKHVPLGKGFSFHICQVYQGKVF 133 (152)
Q Consensus 103 v~W~lew~~~~lp~~rGcSf~~~~~~~gki~ 133 (152)
=.=|+.+....-|. .=.-.|++ ++|+|.
T Consensus 78 DHEhvtr~~g~ge~-dvaciYtv--~~g~Ia 105 (112)
T COG4538 78 DHEHVTRGTGGGER-DVACIYTV--VEGLIA 105 (112)
T ss_pred cceeeccCCCCCce-eEEEEEEE--eCCeee
Confidence 12233331111122 23456777 668753
No 27
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.86 E-value=0.07 Score=40.12 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcEEEE-
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGV- 103 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~v- 103 (152)
.++++|..|..||.+.|.+..-.=+..+|. +|+..-++ -..|.+...++++..|... ....|.|.-+.-||.+|.-
T Consensus 7 ~pi~~V~aF~aA~~~~d~~~avr~~~~~d~-v~~n~gis-~i~G~~~~ia~l~~~~~~~-~~~ef~I~riAadg~~VltE 83 (130)
T COG4308 7 EPIRTVEAFLAALQEDDGDAAVRRLGTPDT-VYNNVGIS-TIHGPAETIALLRPRMAGI-LGFEFKILRIAADGGAVLTE 83 (130)
T ss_pred CcHHHHHHHHHHHHhcCccHHHHHhcCCCe-eeccCCcc-cccchhhhhhhhccccCCc-ceeEEEEEEEecccceehhh
Confidence 458999999999999999988776676654 34432222 2489999999998544333 3556666556666665532
Q ss_pred EEEEEecccccCCCCceEEEEEeeeCCeEEEEeeee
Q 044071 104 SWRLEWNKKHVPLGKGFSFHICQVYQGKVFIKNVEM 139 (152)
Q Consensus 104 ~W~lew~~~~lp~~rGcSf~~~~~~~gki~i~~~~~ 139 (152)
+--.+..|+.+---.=|-.|.+ .+|||... ||
T Consensus 84 R~D~~~~g~~~~~~~V~GvfEV--~~~rI~~W--RD 115 (130)
T COG4308 84 RLDARIDGPLWVQFWVCGVFEV--EDGRIVLW--RD 115 (130)
T ss_pred hhhhhccCCcEEEEEEEEEEEE--eCCEEEee--hh
Confidence 1111111221111155888888 55998877 65
No 28
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=93.73 E-value=0.55 Score=32.13 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccC----CcccHHHHHHHHHHHHHHcCCceEEEEceeeecCcE
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQ----PLQGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMN 100 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~d----Pf~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~ 100 (152)
.+.+++..||+|++++|.+++.+++.++- .+ +.. .-.-...+...+...+.....--...|..... |..
T Consensus 8 ~P~~~v~~f~~al~~gd~~~a~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-g~~ 80 (111)
T PF12870_consen 8 TPEEVVKNFFDALKNGDYEKAYAYLSPES----RE--PEKAKEDFEQFEKQFASEMKKKYKKIGSIKIVEVEENTI-GDT 80 (111)
T ss_dssp -HHHHHHHHHHHHCTT-HHHHHHTB--TT--------SHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEE-SSE
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHhhCccc----cc--hhHHHHHHHHHHHHHHHHHHHhhhccCceEEEEEEEecc-CCE
Confidence 45888999999999999999999999882 21 111 11223334444444444442222222332222 899
Q ss_pred EEEEEEEEecc
Q 044071 101 VGVSWRLEWNK 111 (152)
Q Consensus 101 ~~v~W~lew~~ 111 (152)
|.|+.+.+...
T Consensus 81 A~V~v~~~~~~ 91 (111)
T PF12870_consen 81 ATVTVKITYKD 91 (111)
T ss_dssp EEEEEEEEETT
T ss_pred EEEEEEEEECC
Confidence 99999988753
No 29
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=93.46 E-value=1.3 Score=33.79 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcC
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLG 84 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~ 84 (152)
.....+.++..++..+|.+.+.+.|++|.+-.+ .....|---+.++++||.++++.-|
T Consensus 38 ~vAaLFdrWN~~L~TGdP~kV~anyApDaVLLP--T~Sn~vR~s~~ei~DYF~~FLk~KP 95 (156)
T COG4875 38 EVAALFDRWNAALTTGDPNKVAANYAPDAVLLP--TMSNQVRSSRSEILDYFSHFLKLKP 95 (156)
T ss_pred HHHHHHHHHHhhhhcCChHHHHhhcCCceEeec--ccccccccCHHHHHHHHHHHhccCC
Confidence 446677788888889999999999999974221 1223444778899999999996543
No 30
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=93.41 E-value=0.64 Score=33.62 Aligned_cols=94 Identities=10% Similarity=0.092 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcC-CceEEEEce-eeecCcEEEE
Q 044071 26 ALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLG-NNIEFVVKP-TLHDGMNVGV 103 (152)
Q Consensus 26 a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~-~~~rFvI~~-~~~~g~~~~v 103 (152)
+.+++.+|.+|++++|.+.+.++.+.+- .-...+++..+-++.+++.++ .++++.... ....+..+.+
T Consensus 3 p~~~~~~f~~aw~~~dy~~m~~~~~~~~----------k~~~s~~~~~~~~~~i~~~l~~~~l~v~~~~~~~~~~~~~~~ 72 (118)
T PF05223_consen 3 PEETAEAFLEAWEKGDYAAMYELTSDPS----------KSQYSKEDFVERYQNIYEGLGAENLKVEAEKVKKDEDDTATV 72 (118)
T ss_dssp --HHHHHHHHHHHTT-HHHHHHTB-HHH----------HHHHHHHHHHTHHHHHHHHHT--EEEEEEEEEEECCTTEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhchhh----------hccccHHHHHHHHHHHHhhCCccceEEEeccceecCCCceEE
Confidence 4688999999999999999999888871 112344566667777777665 457774443 3455555555
Q ss_pred --EEEEEecccccCCCCceEEEEEeeeCCe
Q 044071 104 --SWRLEWNKKHVPLGKGFSFHICQVYQGK 131 (152)
Q Consensus 104 --~W~lew~~~~lp~~rGcSf~~~~~~~gk 131 (152)
+.+|++...++ + .--+-+++...++.
T Consensus 73 ~~~~~~~t~~g~~-~-~~~~~~~l~~~~~~ 100 (118)
T PF05223_consen 73 PYTVTMDTPAGGI-W-TYNYTLTLVKEDDD 100 (118)
T ss_dssp EEEEEEEETTEEE---EEEEEEEEEEETTC
T ss_pred EEEEEEEeCCCCc-e-eeEEEEEEEecCCc
Confidence 55555544333 2 33444555444444
No 31
>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.
Probab=85.97 E-value=7.6 Score=28.96 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhccCCHhHHHhhhccCcceecCce-eccC-------C-----cccHHHHHHHHHHHHHHcC-------C
Q 044071 26 ALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFF-SFLQ-------P-----LQGKKQVLDFFTYLIRSLG-------N 85 (152)
Q Consensus 26 a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~-~f~d-------P-----f~G~~av~~~F~~l~~~~~-------~ 85 (152)
..+.+-++-.+++.++.++..+|+++||++-+... .... + +.|+..+.+...++.+... .
T Consensus 6 I~~ll~~ya~~LD~~~~~~w~~lft~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~~~~~~~~~~ 85 (160)
T cd00667 6 VEQFLYREARLLDDRRWDEWLALFAEDCHYWVPARENRERRDEDPGLELSAIYDDDRRMLEDRVVRLRTGRAWSEDPPSR 85 (160)
T ss_pred HHHHHHHHHHHhcccCHHHHHHhhccccEEEcceeechhhhccCCCCCeeEEEeCCHHHHHHHHHHHhcCCccccCCCCc
Confidence 34556677788999999999999999997442211 1111 1 2688888888777765331 2
Q ss_pred ceEEEEce-ee-ecCcEEEEEEE
Q 044071 86 NIEFVVKP-TL-HDGMNVGVSWR 106 (152)
Q Consensus 86 ~~rFvI~~-~~-~~g~~~~v~W~ 106 (152)
+.+++-.. +. .+|..+.+++.
T Consensus 86 ~rH~vsn~~i~~~~~d~a~~~s~ 108 (160)
T cd00667 86 TRHLVSNVRVLEGDGGEIEVRSN 108 (160)
T ss_pred ceEEEccEEEEecCCCEEEEEEE
Confidence 33443333 11 34666666544
No 32
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=82.17 E-value=2 Score=32.35 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhccCCHhHHHhhhccCcceecCceec--cCCcccHHHHHHHHHH
Q 044071 27 LETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSF--LQPLQGKKQVLDFFTY 78 (152)
Q Consensus 27 ~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f--~dPf~G~~av~~~F~~ 78 (152)
.+.+.+++.||...|++.|.+|+.++- .=+.| .+..-|.++|.+|=..
T Consensus 13 ~aaf~~YE~AL~~nDv~~Ld~lFw~~p----~TvRyg~~E~LyG~~aI~aFR~~ 62 (125)
T PF11533_consen 13 TAAFDRYERALMANDVDALDALFWDDP----RTVRYGAGENLYGHDAIRAFRAA 62 (125)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHCB--ST----T-EEEETTEEEESHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHhccCC----ceEEECCCccccCHHHHHHHHhc
Confidence 567789999999999999999999993 33333 3345899999987443
No 33
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.24 E-value=2.2 Score=32.43 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcCCceEEEEcee-eecCcEEE
Q 044071 24 RAALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPT-LHDGMNVG 102 (152)
Q Consensus 24 ~~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~-~~~g~~~~ 102 (152)
..++..|+-.=+++|.+|.+.+.=-|++|-.+ -+. ..=++|++.|++|+++--+.- .+.|. |++. .-.|.++.
T Consensus 12 eta~~kvr~aed~wnsrdp~kv~layt~ds~w-rnr---aef~~gre~i~~fl~rkw~re-~~yrl-ikelwaf~gnria 85 (154)
T COG3558 12 ETAIQKVRMAEDAWNSRDPAKVALAYTEDSFW-RNR---AEFFQGREKIQEFLTRKWDRE-LEYRL-IKELWAFTGNRIA 85 (154)
T ss_pred HHHHHHHHHhHhccccCChhheeeeeccchhh-hhH---HHHHccHHHHHHHHHhhhhHH-HHHHH-HHHHHhhcCCeEE
Confidence 35678888889999999999999999999421 122 122599999999987654322 11121 1121 24567888
Q ss_pred EEEEEEecc
Q 044071 103 VSWRLEWNK 111 (152)
Q Consensus 103 v~W~lew~~ 111 (152)
|+.-.||..
T Consensus 86 vrfayew~d 94 (154)
T COG3558 86 VRFAYEWHD 94 (154)
T ss_pred EEEeEeeec
Confidence 888888854
No 34
>PLN02382 probable sucrose-phosphatase
Probab=72.09 E-value=52 Score=29.01 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=49.1
Q ss_pred HHHHHHhccCC-------HhHHHhhhccCcceecCceeccCCc---ccHHHHHHHHHHHHHHcC-CceEEEEceee---e
Q 044071 31 LKLYSAIKSQS-------LRELSDIIGDECRCVCNFFSFLQPL---QGKKQVLDFFTYLIRSLG-NNIEFVVKPTL---H 96 (152)
Q Consensus 31 ~~fY~A~n~~d-------l~~L~el~a~Dc~~~~~d~~f~dPf---~G~~av~~~F~~l~~~~~-~~~rFvI~~~~---~ 96 (152)
..||+.+=+++ ++.|...++++ .++..|- .-+.++.+.|++++..-+ +.+|+.|+.+. .
T Consensus 291 ~~~~e~W~~~~~~~~~~~~~~l~~~~~p~-------~~~v~p~G~~~~~~~~~~~~~~~~G~~~g~~~~i~vd~~~~~~~ 363 (413)
T PLN02382 291 YLFYEKWRRGEVENSDEVFQRLKSSCAPN-------GVFVHPSGVEKSLHDSIDELRSCYGDKKGKKFRVWVDRVLSTQL 363 (413)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHhcCCC-------eeEECCCcccCCHHHHHHHHHHhhCCCCCCEEEEEEeeEEEEEE
Confidence 46677777765 67788888888 5777775 888999999999996553 34899988742 3
Q ss_pred cCcEEEEEEE
Q 044071 97 DGMNVGVSWR 106 (152)
Q Consensus 97 ~g~~~~v~W~ 106 (152)
....+.|+++
T Consensus 364 ~~~~~~v~~~ 373 (413)
T PLN02382 364 GPDTWLVKFD 373 (413)
T ss_pred cCCeEEEEEe
Confidence 4444555444
No 35
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=71.86 E-value=4.1 Score=34.99 Aligned_cols=48 Identities=19% Similarity=0.454 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCC-cccHHHHHHHHHHHH
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQP-LQGKKQVLDFFTYLI 80 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dP-f~G~~av~~~F~~l~ 80 (152)
.++++|++|....+.+.+..= +++||+ ++|..= .+|..||..|.+.-+
T Consensus 10 tp~evi~~Fi~~vddG~iRrd---LaeDCI-----LS~~gR~VrGa~AVTGflRtQl 58 (334)
T PF06020_consen 10 TPSEVIHEFIQGVDDGTIRRD---LAEDCI-----LSFYGRNVRGAKAVTGFLRTQL 58 (334)
T ss_pred CHHHHHHHHHhhcCcccHhhh---hhhhHh-----HHHhccccccchhhHHHHHHHH
Confidence 569999999999999887653 489998 666554 599999999986633
No 36
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.15 E-value=23 Score=30.14 Aligned_cols=62 Identities=18% Similarity=0.399 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCCceEEEEceeeecCc-E--------EEEEEEEEecccccCCCCceEEEEEeeeCCeEEEEe
Q 044071 70 KQVLDFFTYLIRSLGNNIEFVVKPTLHDGM-N--------VGVSWRLEWNKKHVPLGKGFSFHICQVYQGKVFIKN 136 (152)
Q Consensus 70 ~av~~~F~~l~~~~~~~~rFvI~~~~~~g~-~--------~~v~W~lew~~~~lp~~rGcSf~~~~~~~gki~i~~ 136 (152)
++.++||.+.+..-..++.+.|-++...++ . -|=-|.+-|.||++- +++--.-++|||+|.+
T Consensus 16 da~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-----~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 16 DAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-----TILASCSYDGKVIIWK 86 (299)
T ss_pred HhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-----cEeeEeecCceEEEEe
Confidence 478899998887777888887776654333 1 123599999998872 2333333679999985
No 37
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.43 E-value=40 Score=27.03 Aligned_cols=106 Identities=20% Similarity=0.308 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHhccCCHh----HH-HhhhccCcceecCceeccCCcccHHHHHHHHHHHHHHcC----CceEEEEcee-
Q 044071 25 AALETVLKLYSAIKSQSLR----EL-SDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIRSLG----NNIEFVVKPT- 94 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~----~L-~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~~~~----~~~rFvI~~~- 94 (152)
++-+.+...|+-+...=.. .+ -.+|+.|.+ +.+.+|.-.-+|++..+.-|. ++..+| .+++|++-.+
T Consensus 30 ~~pe~L~~~yerLr~tlPklF~~~~DYS~Ys~dvv--f~n~I~~v~t~G~~~y~~~~~-~~rtlg~~~~ahv~~EvL~vt 106 (202)
T KOG4457|consen 30 PAPEQLEHVYERLRETLPKLFRRRMDYSFYSKDVV--FDNQIFSVETRGIEQYMSHFG-MIRTLGQVFLAHVEMEVLSVT 106 (202)
T ss_pred CChHHHHHHHHHHHHHhHHHHhhcccceeecCCeE--EeecccceeehhHHHHHHHHH-HHHHHHHHhhhheeeEeEeec
Confidence 4455556667766532111 11 247899953 555577766699987655542 222222 6889988874
Q ss_pred -eecCcEEEEEEEEEe--------cccc---------cCCCCceEEEEEeeeCCeEEEE
Q 044071 95 -LHDGMNVGVSWRLEW--------NKKH---------VPLGKGFSFHICQVYQGKVFIK 135 (152)
Q Consensus 95 -~~~g~~~~v~W~lew--------~~~~---------lp~~rGcSf~~~~~~~gki~i~ 135 (152)
..|.-++.++|++-. +-+. +.+=.|-|.+.++. +-++.+
T Consensus 107 ~h~d~~Tvr~RWRv~gvsv~~~f~~~~l~~~de~~~~~swyDgYSv~yl~~--~GlI~k 163 (202)
T KOG4457|consen 107 PHIDEGTVRCRWRVKGVSVTRIFMNPRLLRFDERMQNLSWYDGYSVLYLDG--NGLIYK 163 (202)
T ss_pred ccCCCceEEEEEEEecceEeeeeechHHhhHHHHhcccccccceeEEEECC--CceEEe
Confidence 366778889998642 1111 22227899998855 444444
No 38
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=41.91 E-value=1.2e+02 Score=27.26 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccC------CcccHHHHHHHHHHHHHHcCCceEEEEcee-----e
Q 044071 27 LETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQ------PLQGKKQVLDFFTYLIRSLGNNIEFVVKPT-----L 95 (152)
Q Consensus 27 ~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~d------Pf~G~~av~~~F~~l~~~~~~~~rFvI~~~-----~ 95 (152)
..-|+++|.-|+ ...+.|-.+|.++-.. .=++ -+.|.++|.... |..-...|++.|..+ .
T Consensus 18 ~~Fv~qYY~~L~-~~P~~lhrfY~~~S~l-----tr~~~dg~m~s~t~~~~I~~~i---~sld~~~~s~eI~tvdsQ~S~ 88 (419)
T KOG0116|consen 18 NEFVRQYYNVLQ-NSPSKLHRFYMDDSVL-----TRPGLDGKMVSVTGLEAIHEKI---MSLDYEVCSVEISTVDSQASL 88 (419)
T ss_pred HHHHHHHHHHHh-hChHHHHHHhhcccee-----eccCCCCceEEEecHHHhhhhe---eecCCCceeEEEEEEehhhhc
Confidence 344566666665 5677787899999431 1222 257888887765 333347889999864 3
Q ss_pred ecCcEEEEEEEEEeccccc-CCC-------CceEEEEEeeeCCeEEEEeeeeee
Q 044071 96 HDGMNVGVSWRLEWNKKHV-PLG-------KGFSFHICQVYQGKVFIKNVEMFM 141 (152)
Q Consensus 96 ~~g~~~~v~W~lew~~~~l-p~~-------rGcSf~~~~~~~gki~i~~~~~~~ 141 (152)
++|..+.|+=-|.|++... .|. ++-++|.+++ +++++.+..
T Consensus 89 ~~GvvI~VtG~lt~~~~~rRkF~QtFfLapq~~~yfVlND-----iFRfvde~~ 137 (419)
T KOG0116|consen 89 EKGVVIMVTGYLTNKDGPRRKFSQTFFLAPQEKGYFVLND-----IFRFVDEEF 137 (419)
T ss_pred cCCeEEEEEEEEEeCCCcceEEEEEEEEeecCCceEEEec-----hhhhccccc
Confidence 7888888888888876553 333 3446777766 467777554
No 39
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=41.24 E-value=63 Score=27.45 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHHH
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLIR 81 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~~ 81 (152)
++-+.+.+|-+|+...|-++|.+|+.+| +.++..++. ...+++.+|.+.--+
T Consensus 6 tPe~Aa~Al~~Av~~~d~~aL~~vLG~~----~~~~vp~~~-~d~~~~~~Fl~~w~~ 57 (271)
T PF11453_consen 6 TPEAAADALVDAVATNDEDALAKVLGPD----WRDLVPSGG-ADREDRYRFLRAWAE 57 (271)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHhCcc----HHhccCCCC-ccHHHHHHHHHHHHh
Confidence 3466778889999999999999999999 666666655 678888888766553
No 40
>COG4460 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.68 E-value=1.1e+02 Score=23.04 Aligned_cols=58 Identities=12% Similarity=0.279 Sum_probs=41.4
Q ss_pred HHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCc---ccHHHHHHHHHHHHHHcCCceEEEEcee
Q 044071 29 TVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPL---QGKKQVLDFFTYLIRSLGNNIEFVVKPT 94 (152)
Q Consensus 29 ~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf---~G~~av~~~F~~l~~~~~~~~rFvI~~~ 94 (152)
.|+.++.+=....++.|..=+++| +.+..|. --++|+-++|+.--. ..+-+.++|+++
T Consensus 15 ai~dWl~~~~adtldal~arfaed-------ftMitP~GviLD~~Alg~~frs~ra-crpGl~I~ie~i 75 (130)
T COG4460 15 AIVDWLVAARADTLDALRARFAED-------FTMITPSGVILDRDALGDHFRSSRA-CRPGLAISIEDI 75 (130)
T ss_pred HHHHHHHhcccccHHHHHHHHhcC-------ceEecCCceEeccHHHHHHHHhccC-CCCCeEEEEecc
Confidence 344444444455566666556666 8888886 789999999987765 557889999985
No 41
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=40.12 E-value=17 Score=26.64 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhccCCHhHHHhhhccCc
Q 044071 26 ALETVLKLYSAIKSQSLRELSDIIGDEC 53 (152)
Q Consensus 26 a~~~v~~fY~A~n~~dl~~L~el~a~Dc 53 (152)
+.+.+..+.+|+.++|++.|.+++++++
T Consensus 24 ak~~f~~i~~A~~~~D~~~l~~~~t~~~ 51 (147)
T PF04280_consen 24 AKEAFLPIQEAWAKGDLEALRPLLTEEL 51 (147)
T ss_dssp HHHTHHHHHHHHHHT-HHHHHHHB-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhCHHH
Confidence 4566778899999999999999999994
No 42
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=39.78 E-value=44 Score=26.72 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=49.6
Q ss_pred CCCCcceecCCCCCCCCCCCCCcchHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCc-ccHHHHHHHH
Q 044071 1 HRGLSFVPFDAKNSSSGSGEDDHRAALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPL-QGKKQVLDFF 76 (152)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf-~G~~av~~~F 76 (152)
|||.+---.||.|=--|-+.|.+..+.++. =|-+.+.+++.|+|+-|++ . =.+|..|+ .-+++++++.
T Consensus 57 qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~------ENIRRigeVaKLFADag~i-c-iaSlISPYR~dRdacRel~ 125 (207)
T KOG0635|consen 57 QRGKLTYILDGDNVRHGLNKDLGFKAEDRN------ENIRRIGEVAKLFADAGVI-C-IASLISPYRKDRDACRELL 125 (207)
T ss_pred hcCceEEEecCcccccccccccCcchhhhh------hhHHHHHHHHHHHhcccee-e-eehhcCchhccHHHHHHhc
Confidence 577766677888877777777666665554 2446678889999999852 2 25899999 8899888775
No 43
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.38 E-value=58 Score=24.53 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCC-cccHHHHHHHHHHH
Q 044071 26 ALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQP-LQGKKQVLDFFTYL 79 (152)
Q Consensus 26 a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dP-f~G~~av~~~F~~l 79 (152)
+..-+..+|.-|+ -|-..|..||-+.-. +.|.+- ++|+++|.+=+..|
T Consensus 10 ~~~FvqhYY~~FD-~dR~ql~~lY~~~S~-----LTfEGqq~qG~~~IveKl~sL 58 (126)
T KOG2104|consen 10 AKAFVQHYYSLFD-NDRSQLGALYIDTSM-----LTFEGQQIQGKDAIVEKLTSL 58 (126)
T ss_pred HHHHHHHHHHHhc-CchhHhhhhhcccce-----eeEcchhhcchHHHHHHHhcC
Confidence 3455667777777 677779999998843 677666 59999988776553
No 44
>PF15411 PH_10: Pleckstrin homology domain
Probab=37.10 E-value=26 Score=25.75 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=24.3
Q ss_pred CceEEEEEeeeCCeEEEEeeeeeeecCCCCCCCCC
Q 044071 118 KGFSFHICQVYQGKVFIKNVEMFMEPLLHIGPFRL 152 (152)
Q Consensus 118 rGcSf~~~~~~~gki~i~~~~~~~e~~~k~g~~~l 152 (152)
+.-+-+++ + |+|.|+++..++... +||+..|
T Consensus 56 ~~~~~L~L--K-GrI~i~~i~~v~~~s-~~g~~~L 86 (116)
T PF15411_consen 56 KKKTKLQL--K-GRIYISNITEVSSSS-KPGSYSL 86 (116)
T ss_pred CCCceEEE--e-eEEEEEeeeeeeccC-CCCceEE
Confidence 56667777 5 799999999999876 7887543
No 45
>COG2964 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.77 E-value=89 Score=25.74 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=33.4
Q ss_pred HHHHHHHHHHH----HHcCCceEEEEceeeecCcEEEEEEEEEecccccC
Q 044071 70 KQVLDFFTYLI----RSLGNNIEFVVKPTLHDGMNVGVSWRLEWNKKHVP 115 (152)
Q Consensus 70 ~av~~~F~~l~----~~~~~~~rFvI~~~~~~g~~~~v~W~lew~~~~lp 115 (152)
..+++.|..+. +-.|++|.+|+++....++.+.-.|.-|..|+.+-
T Consensus 8 ~~~L~~y~~vv~~l~~llgp~~EIVLH~l~~~~~svi~IaN~h~SgR~vG 57 (220)
T COG2964 8 RELLNSYKAVVDFLAKLLGPHCEIVLHDLEDLEHSVIAIANGHISGRQVG 57 (220)
T ss_pred HHHHHHHHHHHHHHHHHhccCeEEEEEEcccCCceEEEEecCccccCccC
Confidence 34444444433 23478999999998888888888999888887773
No 46
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=34.30 E-value=73 Score=27.20 Aligned_cols=73 Identities=23% Similarity=0.450 Sum_probs=46.4
Q ss_pred HHHhhhccCcceecCceec---cCCcccHHHHHHHHHHHHHHcCCceEEEEceee-ecCcEEEEEEE-----EEeccccc
Q 044071 44 ELSDIIGDECRCVCNFFSF---LQPLQGKKQVLDFFTYLIRSLGNNIEFVVKPTL-HDGMNVGVSWR-----LEWNKKHV 114 (152)
Q Consensus 44 ~L~el~a~Dc~~~~~d~~f---~dPf~G~~av~~~F~~l~~~~~~~~rFvI~~~~-~~g~~~~v~W~-----lew~~~~l 114 (152)
+|..-++.||. +-+...| ++-|+|-+++..||.-+..++.++-+--|..+. -.=-.-++.|| .||+.-.+
T Consensus 202 ELLkkL~~dcL-vmq~Hk~gisp~nF~~N~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKnafEWgss~I 280 (340)
T KOG1559|consen 202 ELLKKLSTDCL-VMQNHKFGISPKNFQGNPALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNAFEWGSSDI 280 (340)
T ss_pred HHHHHhccchh-eeeccccccchhhccCCHHHHHHHhheeeecCCCceEEEEeecceeccceeeeecCccCccccccCCC
Confidence 44444577885 3222233 455899999999999998888663333333322 22334577999 56877777
Q ss_pred CCC
Q 044071 115 PLG 117 (152)
Q Consensus 115 p~~ 117 (152)
|..
T Consensus 281 pHs 283 (340)
T KOG1559|consen 281 PHS 283 (340)
T ss_pred CCC
Confidence 775
No 47
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=34.20 E-value=1.1e+02 Score=22.31 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=24.2
Q ss_pred HHcCCceEEEEceeeecCcEEEEEEEEEeccccc
Q 044071 81 RSLGNNIEFVVKPTLHDGMNVGVSWRLEWNKKHV 114 (152)
Q Consensus 81 ~~~~~~~rFvI~~~~~~g~~~~v~W~lew~~~~l 114 (152)
+.+|++|.++++|...-.+.+...|.-|..|+++
T Consensus 14 ~~lG~~~EVVLHDl~~~~~sIv~I~Ng~vsgR~v 47 (118)
T PF08348_consen 14 ATLGPNCEVVLHDLSDPEHSIVAIANGHVSGRKV 47 (118)
T ss_pred HHhCCCeEEEEEECCCCCCEEEEEECCCccCCcc
Confidence 3348999999999765556666677766666665
No 48
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=33.99 E-value=78 Score=24.19 Aligned_cols=47 Identities=26% Similarity=0.402 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHH
Q 044071 27 LETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTY 78 (152)
Q Consensus 27 ~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~ 78 (152)
-+-+..+|+.++++ -..|..||-+....+-+ -.|..|.+.+..||..
T Consensus 17 ~eFv~~YY~smD~r-R~~i~rlY~~~atlvWN----Gn~v~g~esls~ff~~ 63 (139)
T KOG4353|consen 17 EEFVNVYYSSMDKR-RRGIGRLYLDNATLVWN----GNPVSGTESLSEFFNM 63 (139)
T ss_pred HHHHHHHHHHHHHH-HHHhHHHhhccceEEEc----CCcchhHHHHHHHHHh
Confidence 34445667777654 57899999999763321 3588999999998853
No 49
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=33.61 E-value=1.4e+02 Score=20.47 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.2
Q ss_pred CceEEEEEee-eCCeEEEE
Q 044071 118 KGFSFHICQV-YQGKVFIK 135 (152)
Q Consensus 118 rGcSf~~~~~-~~gki~i~ 135 (152)
+|...|+++. .+|||.|+
T Consensus 29 ~~~d~F~l~~~~~gki~I~ 47 (86)
T PF12971_consen 29 NGKDVFELSSADNGKIVIR 47 (86)
T ss_dssp TTBEEEEEEE-SSS-EEEE
T ss_pred CCCCEEEEEeCCCCeEEEE
Confidence 3788899887 88999987
No 50
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=33.49 E-value=1.9e+02 Score=21.19 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCceEEEEceeeecCcEEEEEEEEEecccccCCCCceEEEEEeeeCCeEEEEeeeeeee
Q 044071 72 VLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGVSWRLEWNKKHVPLGKGFSFHICQVYQGKVFIKNVEMFME 142 (152)
Q Consensus 72 v~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~v~W~lew~~~~lp~~rGcSf~~~~~~~gki~i~~~~~~~e 142 (152)
|.++.++..+.-+.+-..+...+.+..+.=.+--++-|.+.+. -.||.++ ++-.+|||-|. +|-.|
T Consensus 11 I~~iL~~ya~~~~~~~~ie~~~ifD~e~dhYll~~~GW~~~~r--i~g~~iH-~dI~dgKIWIq--~d~TE 76 (111)
T PF08869_consen 11 IKQILEEYAQIKPSNGDIETQLIFDTERDHYLLMSVGWDNQRR--IHGCLIH-LDIKDGKIWIQ--RDGTE 76 (111)
T ss_dssp HHHHHHHHHHHCHSSTCEEEEEEEETTTTEEEEEEEEEETTEE--EEEEEEE-EEEETTEEEEE--EESSS
T ss_pred HHHHHHHHhcCCCCCCCeEEEEEEeCCCCEEEEEEeeEECCEE--EEEEEEE-EEEECCeEEEE--cCchh
Confidence 3344433333223344444444555555555566677755443 1567643 44478999998 55444
No 51
>PHA03326 nuclear egress membrane protein; Provisional
Probab=27.61 E-value=2.3e+02 Score=24.08 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=49.7
Q ss_pred ccHHHHHHHHHHHHHHcCCceEEEEceeeecCcEEEEEEEEEe--cccccCCCCceEEEEEeeeCCeEEEEeeeeeeecC
Q 044071 67 QGKKQVLDFFTYLIRSLGNNIEFVVKPTLHDGMNVGVSWRLEW--NKKHVPLGKGFSFHICQVYQGKVFIKNVEMFMEPL 144 (152)
Q Consensus 67 ~G~~av~~~F~~l~~~~~~~~rFvI~~~~~~g~~~~v~W~lew--~~~~lp~~rGcSf~~~~~~~gki~i~~~~~~~e~~ 144 (152)
=-+|=++.||+...+ ....|+++.| |-++++..-++. +=..++..+.|.++++++ -+|..-.|+.+
T Consensus 53 Y~vEYLLS~WE~~T~---~~pcFvFKNT---G~aVSL~Cyv~~Pvkl~s~~~VrefNvL~VNE----sLiV~l~DIe~-- 120 (275)
T PHA03326 53 YSLEYLLSYWESRTK---QEPCFVFKNT---GCAVSLSCYVHAPVKLESLRRVREFNVLRVNE----SLIVTLKDIEA-- 120 (275)
T ss_pred eeHHHHHHHHHHhhc---CCceEEEecC---CceEEEEEEecCchhhccccceeeeEEEEecc----eEEEEhhHhhh--
Confidence 457889999999886 5569999886 667888776665 333455559999999866 34554556553
Q ss_pred CCCCC
Q 044071 145 LHIGP 149 (152)
Q Consensus 145 ~k~g~ 149 (152)
|||-.
T Consensus 121 IKPs~ 125 (275)
T PHA03326 121 IKPSA 125 (275)
T ss_pred cCCcc
Confidence 66644
No 52
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=27.60 E-value=62 Score=27.05 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCceEEEE-------ceee--ecCcEEEEEEEEEecccc
Q 044071 71 QVLDFFTYLIRSLGNNIEFVV-------KPTL--HDGMNVGVSWRLEWNKKH 113 (152)
Q Consensus 71 av~~~F~~l~~~~~~~~rFvI-------~~~~--~~g~~~~v~W~lew~~~~ 113 (152)
.|-.|-.+..+.++++++.+- +.+. ++...+||.||=||.-..
T Consensus 172 ~VNS~HhQaIk~La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~ 223 (243)
T COG2071 172 MVNSFHHQAIKKLAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDT 223 (243)
T ss_pred eecchHHHHHHHhCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccC
Confidence 566677778888888888843 3322 467899999999996433
No 53
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=25.30 E-value=62 Score=21.67 Aligned_cols=27 Identities=19% Similarity=0.189 Sum_probs=17.0
Q ss_pred EEEeeeCCeEEEEeeeeeeecCCCCCC
Q 044071 123 HICQVYQGKVFIKNVEMFMEPLLHIGP 149 (152)
Q Consensus 123 ~~~~~~~gki~i~~~~~~~e~~~k~g~ 149 (152)
+.+...+|+|.+-|.|.++-+.++|+.
T Consensus 34 ~~~~v~dg~v~vd~~r~fl~~~~~~ps 60 (65)
T PF09211_consen 34 YKLKVKDGKVHVDYGRQFLSGSIKPPS 60 (65)
T ss_dssp SEEEEETTEEEEE-S--BSSTT--S-E
T ss_pred ceEEEeCCEEEEeCCcccCCCCcCCCc
Confidence 455557799999999999999999873
No 54
>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
Probab=23.67 E-value=1.2e+02 Score=21.51 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHHhccC--CHhHHHhhhccC
Q 044071 24 RAALETVLKLYSAIKSQ--SLRELSDIIGDE 52 (152)
Q Consensus 24 ~~a~~~v~~fY~A~n~~--dl~~L~el~a~D 52 (152)
..+...+.+.++++.++ +-++|..-|+++
T Consensus 35 ~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~ 65 (115)
T PTZ00356 35 EEAIKELAKWREQIVSGEKTFEEIARQRSDC 65 (115)
T ss_pred HHHHHHHHHHHHHHHhCccCHHHHHHHhCCC
Confidence 36677889999999976 899999999976
No 55
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=23.13 E-value=73 Score=22.70 Aligned_cols=45 Identities=13% Similarity=0.331 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHH
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFT 77 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~ 77 (152)
...+.+.+||++++.+.+.... +.=|+ -.-..-.||++|+.+.|+
T Consensus 53 ~~~~~~~~F~~~f~g~~w~~~~---s~Kvc-----~i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 53 TSPQAAIRFYKAFNGKKWPNFN---SKKVC-----EISYARIQGKDALVEHFR 97 (97)
T ss_pred CCHHHHHHHHHHHcCCccccCC---CCcEE-----EEehhHhhCHHHHHHhhC
Confidence 3367778999999999986543 23321 123334699999988773
No 56
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=22.82 E-value=71 Score=29.70 Aligned_cols=46 Identities=15% Similarity=0.319 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhccCCHhHHHhhhccCcceecCceeccCCcccHHHHHHHHHHHH
Q 044071 27 LETVLKLYSAIKSQSLRELSDIIGDECRCVCNFFSFLQPLQGKKQVLDFFTYLI 80 (152)
Q Consensus 27 ~~~v~~fY~A~n~~dl~~L~el~a~Dc~~~~~d~~f~dPf~G~~av~~~F~~l~ 80 (152)
-..+.+||+|||.+..+....-. -|- .-.+=.||++++.++|+...
T Consensus 441 p~ai~~F~kAFnGk~W~~FnS~K--ia~------itYArIQGk~~Li~hFqnS~ 486 (549)
T KOG4660|consen 441 PEAIIRFYKAFNGKKWEKFNSEK--IAS------ITYARIQGKEALIEHFQNSS 486 (549)
T ss_pred HHHHHHHHHHHcCCchhhhccee--eee------eehhhhhchHHHHHHhhccc
Confidence 46678999999999998875211 121 22233599999999998743
No 57
>PF07961 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 is an inner membrane protein that is part of the mitochondrial protein export machinery [, ]. It binds to the large subunit of mitochondrial ribosomes and cooperates with the C-terminal ribosome-binding domain of Oxa1, which is a central component of the insertion machinery of the inner membrane. In the absence of both Mba1 and the C terminus of Oxa1, mitochondrial translation products fail to be properly inserted into the inner membrane and serve as substrates of the matrix chaperone Hsp70 []. It is proposed that Mba1 functions as a ribosome receptor that cooperates with Oxa1 in the positioning of the ribosome exit site to the insertion machinery of the inner membrane [].
Probab=22.68 E-value=87 Score=25.95 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHhccCCHhHHHhhhccC
Q 044071 25 AALETVLKLYSAIKSQSLRELSDIIGDE 52 (152)
Q Consensus 25 ~a~~~v~~fY~A~n~~dl~~L~el~a~D 52 (152)
.|.+..++.|+||.++|+++|..+.+..
T Consensus 75 ~AiE~yv~~NkaFA~~~~~~L~~~c~~~ 102 (235)
T PF07961_consen 75 KAIELYVQMNKAFAAGDLDKLRKICSSW 102 (235)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhhHH
Confidence 5788999999999999999998776555
No 58
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=21.62 E-value=1.7e+02 Score=23.24 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=23.4
Q ss_pred EEecccccCCCCceEEEEEeeeCCeEEEEeeeeeeec
Q 044071 107 LEWNKKHVPLGKGFSFHICQVYQGKVFIKNVEMFMEP 143 (152)
Q Consensus 107 lew~~~~lp~~rGcSf~~~~~~~gki~i~~~~~~~e~ 143 (152)
+..++++++. +...-++..-.+||+++....-+-+|
T Consensus 92 i~~~g~~~~~-~~p~~~~~~~~~g~L~~~F~lpL~~p 127 (212)
T PF06226_consen 92 IYVDGKPVKF-KKPEDFRLEFEDGRLVLSFTLPLAQP 127 (212)
T ss_pred EEECCeEecC-CCCceeEEEEECCEEEEEEEEeCCCc
Confidence 3455666666 36666777767777777766665554
No 59
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=21.47 E-value=2.1e+02 Score=19.70 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=27.1
Q ss_pred HHHHhccCCHhHH--Hh-hhccCccee---cCceeccCCc-ccHHHHHHHHHHHHHHcCCceEEEEc
Q 044071 33 LYSAIKSQSLREL--SD-IIGDECRCV---CNFFSFLQPL-QGKKQVLDFFTYLIRSLGNNIEFVVK 92 (152)
Q Consensus 33 fY~A~n~~dl~~L--~e-l~a~Dc~~~---~~d~~f~dPf-~G~~av~~~F~~l~~~~~~~~rFvI~ 92 (152)
|=+|+.....-.+ .. +..++|+.| +++++|..|- =|...++.. +++- +.++|+|.
T Consensus 13 Y~eALG~~~~V~VPY~k~~~~p~~v~V~GLPegi~fr~P~~Y~i~~L~~I----L~~~-~~I~FvIk 74 (76)
T PF02946_consen 13 YGEALGKSEPVPVPYEKFQRDPEAVYVQGLPEGIPFRRPSNYGIPRLEKI----LEAS-SRIRFVIK 74 (76)
T ss_dssp HHHHHT-SS-----HHHHHHTTTTEEEES--TT--SS-TTTS-HHHHHHH----HHTT-TT-EEEES
T ss_pred HHHHhCCCCcccCCHHHHhhCCCcEEEEeCCCCCcCCCCCcCCHHHHHHH----HHcc-CCcEEEEe
Confidence 3356655553333 11 224555555 8999999996 787766544 4444 89999985
No 60
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=20.93 E-value=1.1e+02 Score=24.13 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=25.0
Q ss_pred hHHHH-HHHHHHHhccCCHhHHH----hhhccCcceecCceeccCC
Q 044071 25 AALET-VLKLYSAIKSQSLRELS----DIIGDECRCVCNFFSFLQP 65 (152)
Q Consensus 25 ~a~~~-v~~fY~A~n~~dl~~L~----el~a~Dc~~~~~d~~f~dP 65 (152)
.+.+. |+++|++++..|...|. .++-++|.++.+-..|+.|
T Consensus 5 q~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II~Ng~Pi~~~ 50 (166)
T PF10429_consen 5 QIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKIIWNGTPIAQP 50 (166)
T ss_dssp CCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEEETTEEES-H
T ss_pred hhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEEECCccCCCH
Confidence 34444 47999999966654443 3566789877666666655
No 61
>COG5562 Phage envelope protein [General function prediction only]
Probab=20.48 E-value=1.2e+02 Score=23.23 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=17.7
Q ss_pred cEEEE-EEEEEecccccCCCCceEEEEEee
Q 044071 99 MNVGV-SWRLEWNKKHVPLGKGFSFHICQV 127 (152)
Q Consensus 99 ~~~~v-~W~lew~~~~lp~~rGcSf~~~~~ 127 (152)
-.||| +|+.+... +-|+.|-+++
T Consensus 99 a~AGVfrwv~di~~------~krtY~~~dn 122 (137)
T COG5562 99 AEAGVFRWVTDINE------RKRTYYGLDN 122 (137)
T ss_pred HhCCeEEEEEEccc------CeEEEEecCC
Confidence 34777 99999866 7789998844
No 62
>PF10791 F1F0-ATPsyn_F: Mitochondrial F1-F0 ATP synthase subunit F of fungi; InterPro: IPR019727 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F found in the F0 complex of F-ATPases from fungal mitochondria. The membrane bound F1-FO-type H+ ATP synthase of mitochondria catalyses the terminal step in oxidative respiration converting the generation of the electrochemical gradient into ATP for cellular biosynthesis. The general structure and the core subunits of the enzyme are highly conserved in both prokaryotic and eukaryotic organisms.
Probab=20.44 E-value=92 Score=22.42 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=25.4
Q ss_pred CCCc-cee--cCCCCCCCCCCCCCcchHHHHHHHHHHHhccCCHhH
Q 044071 2 RGLS-FVP--FDAKNSSSGSGEDDHRAALETVLKLYSAIKSQSLRE 44 (152)
Q Consensus 2 ~~~~-~~~--~~~~~~~~~~~~~~~~~a~~~v~~fY~A~n~~dl~~ 44 (152)
|+|| |+| +-++++-++-+.. .....|..||+.+-++.-.+
T Consensus 7 R~lstLIPPKIasp~~lgs~~~A---~rm~~vV~FY~kLPkGpAp~ 49 (95)
T PF10791_consen 7 RALSTLIPPKIASPKALGSAPNA---ARMARVVSFYKKLPKGPAPA 49 (95)
T ss_pred hhcccCCCCCcCCHhhcCCCcch---HHHHHHHHHHHhCCCCCCCC
Confidence 4454 566 5555554443332 34788899999998876544
Done!