BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044075
(786 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)
Query: 509 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLAT 568
SS V FS DG+ +ASA DK V +WN N Q T H+ + V FRP+ +A+
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIAS 279
Query: 569 SSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYS 628
+S DKTV++W+ + LQT TGH++ V + F P + + D + ++ WN +
Sbjct: 280 ASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWNRNGQH 336
Query: 629 CARIS--KGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDT 686
++ V F P + +A+ + V +++ +L + GHS+ + V +
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 395
Query: 687 NGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWN 745
+G+ +AS S D +V++W+ +G+ + L+ + F P T+ ++++LWN
Sbjct: 396 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Query: 746 MAENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
T+ H + +A SP +ASAS DK+VK+W
Sbjct: 455 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)
Query: 509 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLAT 568
SS V FS DG+ +ASA DK V +WN N Q T H+ + V F P+ +A+
Sbjct: 57 SSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 115
Query: 569 SSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYS 628
+S DKTV++W+ + LQT TGH++ V + F P + + D + ++ WN +
Sbjct: 116 ASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWNRNGQL 172
Query: 629 CARIS--KGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDT 686
++ V F P + +A+ + V +++ +L + GHS+ + V +
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 687 NGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWN 745
+G+ +AS S D +V++W+ +G+ + L+ + + F P T+ ++++LWN
Sbjct: 232 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Query: 746 MAENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
T+ H + +A SP +ASAS DK+VK+W
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 139/280 (49%), Gaps = 9/280 (3%)
Query: 509 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLAT 568
SS V FS DG+ +ASA DK V +WN N Q T H+ + V F P+ +A+
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIAS 361
Query: 569 SSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYS 628
+S DKTV++W+ + LQT TGH++ V + F P + + D + ++ WN +
Sbjct: 362 ASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWNRNGQL 418
Query: 629 CARIS--KGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDT 686
++ V F P + +A+ + V +++ +L + GHS+ + V +
Sbjct: 419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 477
Query: 687 NGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWN 745
+G+ +AS S D +V++W+ +G+ + L+ + F P T+ ++++LWN
Sbjct: 478 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Query: 746 MAENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
T+ H + +A SP +ASAS DK+VK+W
Sbjct: 537 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 142/288 (49%), Gaps = 9/288 (3%)
Query: 501 EVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFR 560
E + + SS V FS DG+ +ASA DK V +WN N Q T H+ + V F
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 66
Query: 561 PNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIR 620
P+ +A++S DKTV++W+ + LQT TGH++ V + F P + + D + ++
Sbjct: 67 PDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVK 123
Query: 621 FWNLSQYSCARIS--KGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTE 678
WN + ++ V F P + +A+ + V +++ +L + GHS+
Sbjct: 124 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 182
Query: 679 IHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGG 737
+ V + +G+ +AS S D +V++W+ +G+ + L+ + F P T+
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 241
Query: 738 YQSLELWNMAENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
++++LWN T+ H ++ +A P +ASAS DK+VK+W
Sbjct: 242 DKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 11/241 (4%)
Query: 509 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLAT 568
SS V FS DG+ +ASA DK V +WN N Q T H+ + V F P+ +A+
Sbjct: 344 SSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402
Query: 569 SSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYS 628
+S DKTV++W+ + LQT TGH++ V + F P + + D + ++ WN +
Sbjct: 403 ASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASD-DKTVKLWNRNGQL 459
Query: 629 CARISKGGTVQVR---FQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWD 685
++ G + VR F P + +A+ + V +++ +L + GHS+ + V +
Sbjct: 460 LQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 517
Query: 686 TNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELW 744
+G+ +AS S D +V++W+ +G+ + L+ + F P T+ ++++LW
Sbjct: 518 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Query: 745 N 745
N
Sbjct: 577 N 577
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 110 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 167
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 168 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 227
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 228 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 286
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 287 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 94
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 95 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 214 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 270
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 271 TGGKWIVSGSEDNLVYIW 288
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 241
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 242 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 301
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 302 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 336
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 108 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 165
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 166 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 225
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 226 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 284
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 92
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 93 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 268
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 269 TGGKWIVSGSEDNLVYIW 286
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 239
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 240 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 299
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 300 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 334
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 92 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 149
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 209
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 210 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 268
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 76
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 77 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 252
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 253 TGGKWIVSGSEDNLVYIW 270
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 223
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 92 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 149
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 209
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 210 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 268
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 76
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 77 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 252
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 253 TGGKWIVSGSEDNLVYIW 270
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 223
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 92 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 149
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 209
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 210 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 268
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 76
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 77 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 252
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 253 TGGKWIVSGSEDNLVYIW 270
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 223
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 91 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 148
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 149 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 208
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 209 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 267
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 268 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 75
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 76 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 194
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 195 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 251
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 252 TGGKWIVSGSEDNLVYIW 269
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 222
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 223 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 283 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 317
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 103 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 160
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 161 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 220
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 221 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 279
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 280 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 326
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 87
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 88 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 207 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 263
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 264 TGGKWIVSGSEDNLVYIW 281
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 234
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 235 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 295 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 329
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 84
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 85 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 142
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 143 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 202
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 203 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 261
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 262 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 69
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 70 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 245
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 246 TGGKWIVSGSEDNLVYIW 263
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 216
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 217 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 277 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 311
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 87 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 144
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 145 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 204
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 205 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 263
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 264 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 71
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 72 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 190
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 191 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 247
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 248 TGGKWIVSGSEDNLVYIW 265
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 218
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 219 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 279 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 313
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 86 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 143
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 203
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 204 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 262
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 70
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 71 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 246
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 247 TGGKWIVSGSEDNLVYIW 264
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 217
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 278 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 312
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 86 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 143
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 203
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 204 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 262
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 70
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 71 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 246
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 247 TGGKWIVSGSEDNLVYIW 264
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 217
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 278 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 312
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LA++ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 89 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 146
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 265
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 124/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA SS DK ++IW A F +T +GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKF-EKTISGHKLGISD 73
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 74 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 249
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 250 TGGKWIVSGSEDNLVYIW 267
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 220
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 82 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 139
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 140 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 199
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 200 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 258
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 259 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 66
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 67 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 185
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 186 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 242
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 243 TGGKWIVSGSEDNLVYIW 260
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 213
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 214 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 274 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 308
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 517 FSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVR 576
F GKLLAS D + +W+ + F+ T H+H ++ V PN + ++S DKT++
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 577 IWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSCARISKG 635
+W+ + +C++T+TGH V + P ++ L SC + +R W ++ C
Sbjct: 218 MWEV-QTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECK----- 269
Query: 636 GTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVS 695
++R + ++ A E+ S T G T+ G +L S S
Sbjct: 270 --AELREHRHVVECISWAPESSYSSISEAT--------GSETKKSG----KPGPFLLSGS 315
Query: 696 QD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENKCM-T 753
+D ++++W +++G C+ L N +FH ++ ++L +W+ +CM T
Sbjct: 316 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375
Query: 754 IAAHDCVISALAQSPVTGMVASASHDKSVKIWK 786
+ AH+ +++L V + S D++VK+W+
Sbjct: 376 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 76/149 (51%), Gaps = 2/149 (1%)
Query: 639 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD- 697
+V F P ++++A+ + + ++D ET + KGH+ + + +D +G+ LAS S D
Sbjct: 113 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 172
Query: 698 SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENKCM-TIAA 756
++++W ECI + + S P+ ++ +++++W + C+ T
Sbjct: 173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 232
Query: 757 HDCVISALAQSPVTGMVASASHDKSVKIW 785
H + + + ++AS S+D++V++W
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 89 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLK 146
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT--LMVIGGYQS--LE 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T ++ G + +
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNMVY 265
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 123/258 (47%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 73
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 74 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 249
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 250 TGGKWIVSGSEDNMVYIW 267
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 100/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ T H+ ++ V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 220
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 73
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 74 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 249
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 250 TGGKWIVSGSEDNLVYIW 267
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 89 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 146
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 265
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K++K
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYK 312
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 220
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLYKSDC 315
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ + T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 73
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 74 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ +L+LW+ ++ KC+ T H C+ A V
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 249
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 250 TGGKWIVSGSEDNLVYIW 267
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 89 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK 146
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 688 GEY-LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT---LMVIGGYQSL-E 742
G+Y LA+ +++++W + G+C+ + N+ + CIF T +V G +L
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVY 265
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K++K
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFK 312
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ + T H+ ++ V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N+ ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 220
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLFKSDC 315
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V+ FS +G+ LAS+ DK + +W + + E T H I+DV + +S L ++S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
DKT++IWD + CL+T GH+N+V +F+P+ N L S + +R W++ C +
Sbjct: 89 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLK 146
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDR-LTHSFKGHSTEIHSVCWDTN 687
+ V F L+++++ + + I+D + + L + + V + N
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 688 GEYLASVSQDS-VRVWSLASGECIHELSSSGNKFHSCIFHPSYPT--LMVIGGYQS--LE 742
G+Y+ + + D+ +++W + G+C+ + N+ + CIF T ++ G + +
Sbjct: 207 GKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNMVY 265
Query: 743 LWNMAENKCM-TIAAHDCVISALAQSPVTGMVASAS--HDKSVKIWK 786
+WN+ + + + H V+ + A P ++ASA+ +DK++K+WK
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 17/258 (6%)
Query: 540 NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS 599
N+ T H ++ V+F PN LA+SS DK ++IW A F +T +GH +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISD 73
Query: 600 LDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQV---RFQPRLGLLLAAASEN 656
+ + N L S + ++ W++S C + KG + V F P+ L+++ + +
Sbjct: 74 VAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 657 VVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSS 715
V I+DV+T + HS + +V ++ +G + S S D + R+W ASG+C+ L
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 716 SGNKFHSCI-FHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHD----CVISALAQSPV 769
N S + F P+ ++ L+LW+ ++ KC+ T H C+ A V
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI---FANFSV 249
Query: 770 TG--MVASASHDKSVKIW 785
TG + S S D V IW
Sbjct: 250 TGGKWIVSGSEDNMVYIW 267
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 100/215 (46%), Gaps = 9/215 (4%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ +++ S+ V CC+F+ L+ S D+ V +W+++ T H+ ++ V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMS-LDFHPKKNDLFCSCDGNSEIR 620
+ + + +SS+D RIWD A CL+T +N +S + F P + + N +++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-DLK 220
Query: 621 FWNLSQYSCARISKGG-----TVQVRFQPRLGLLLAAASE-NVVSIFDVETDRLTHSFKG 674
W+ S+ C + G + F G + + SE N+V I++++T + +G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 675 HSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGEC 709
H+ + S +AS + ++ + L +C
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 129/279 (46%), Gaps = 43/279 (15%)
Query: 521 GKLLASAGHDKKVVVWNMENFQTECTP---DDHNHIITDVRFRPNSTQLATSSFDKTVRI 577
G LLAS G D+++ +W E C + H + V + P LA++SFD T I
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 578 WDAAKPNF-CLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNL---SQYSCARIS 633
W + +F C+ T GH N V S+ + P N L +C + + W + +Y C +
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVL 146
Query: 634 KGGTVQVR---FQPRLGLLLAAASENVVSIFDVETDR--LTHSFKGHSTEIHSVCWDTNG 688
T V+ + P LL +A+ ++ V ++ E D + +GH + + S+ +D +G
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG 206
Query: 689 EYLASVSQD-SVRVWS--LASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWN 745
+ LAS S D +VR+W L E ++ SG+ PS+ + + G+ S +++
Sbjct: 207 QRLASCSDDRTVRIWRQYLPGNE--QGVACSGSD-------PSWKCICTLSGFHSRTIYD 257
Query: 746 MAENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKI 784
+A + +TG +A+A D ++++
Sbjct: 258 IAWCQ------------------LTGALATACGDDAIRV 278
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 609 LFCSCDGNSEIRFWNLS--QYSCARI-SKGGTVQVR---FQPRLGLLLAAASENVVSIFD 662
L SC G+ IR W + C + S+G VR + P L +A+ + I+
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89
Query: 663 VETD--RLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASG---ECIHELSSS 716
D + +GH E+ SV W +G LA+ S+D SV VW + EC+ L+S
Sbjct: 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149
Query: 717 GNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENK---CMTIAAHDCVISALAQSPVTGMV 773
++HPS L +++L+ E+ C T+ H+ + +LA P +
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209
Query: 774 ASASHDKSVKIWK 786
AS S D++V+IW+
Sbjct: 210 ASCSDDRTVRIWR 222
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 499 FNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNM-ENFQTECTP--DDHNHIIT 555
F V+++ ++V ++ G LLA+ DK V VW + E + EC + H +
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 556 DVRFRPNSTQLATSSFDKTVRIWDAAKPNF-CLQTYTGHNNHVMSLDFHPKKNDLFCSCD 614
V + P+ LA++S+D TV+++ + ++ C T GH + V SL F P L SC
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCS 213
Query: 615 GNSEIRFWN 623
+ +R W
Sbjct: 214 DDRTVRIWR 222
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 24/134 (17%)
Query: 517 FSSDGKLLASAGHDKKVVVWNM---------------ENFQTECTPDD-HNHIITDVRFR 560
F G+ LAS D+ V +W +++ CT H+ I D+ +
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261
Query: 561 PNSTQLATSSFDKTVRIW------DAAKPNFCL--QTYTGHNNHVMSLDFHPKKNDLFCS 612
+ LAT+ D +R++ D +P F L + H+ V + ++PK+ L S
Sbjct: 262 QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 613 CDGNSEIRFWNLSQ 626
C + E+ FW +
Sbjct: 322 CSDDGEVAFWKYQR 335
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 134/286 (46%), Gaps = 32/286 (11%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
+TC F G + S D + VW+ + T H + + R N + + S
Sbjct: 122 ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGST 177
Query: 572 DKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 631
D+T+++W+A + C+ T GH + V + H K+ S ++ +R W++ C
Sbjct: 178 DRTLKVWNA-ETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLH 233
Query: 632 ISKGGTVQVRFQPRLGL-LLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEY 690
+ G VR G +++ A + +V ++D ET+ H+ +GH+ ++S+ +D G +
Sbjct: 234 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIH 291
Query: 691 LASVSQD-SVRVWSLASGECIHELS-----SSGNKFHSCIFHPSYPTLMVIGGYQS-LEL 743
+ S S D S+RVW + +G CIH L+ +SG + ++V G S +++
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--------NILVSGNADSTVKI 343
Query: 744 WNMAENKCMTIA----AHDCVISALAQSPVTGMVASASHDKSVKIW 785
W++ +C+ H ++ L + V ++S D +VK+W
Sbjct: 344 WDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLW 387
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 17/220 (7%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
+ ++ +S V C H K + S D + VW++E Q C H+ +
Sbjct: 192 IHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQ--CLHVLMGHVAAVRCVQY 247
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDF---HPKKNDLFCSCDGNSE 618
+ ++ + ++D V++WD + CL T GH N V SL F H L ++
Sbjct: 248 DGRRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYSLQFDGIHVVSGSL------DTS 300
Query: 619 IRFWNLSQYSCARISKG-GTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHST 677
IR W++ +C G ++ + + +L++ +++ V I+D++T + + +G +
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 678 EIHSV-CWDTNGEYLASVSQD-SVRVWSLASGECIHELSS 715
+V C N ++ + S D +V++W L +GE I L +
Sbjct: 361 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 23/162 (14%)
Query: 520 DGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWD 579
DG + S D + VW++E T H + + + + N L + + D TV+IWD
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWD 345
Query: 580 AAKPNFCLQTYTGHNNH---VMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR----I 632
K CLQT G N H V L F+ KN + S D + ++ W+L R +
Sbjct: 346 I-KTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD-DGTVKLWDLKTGEFIRNLVTL 401
Query: 633 SKGGTVQVRFQPRLG---LLLAAASEN-------VVSIFDVE 664
GG+ V ++ R L+ A S N +V FDV+
Sbjct: 402 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 672 FKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYP 730
KGH + + C G + S S D +++VWS +G+C+ L S +
Sbjct: 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-- 170
Query: 731 TLMVIGGY--QSLELWNMAENKCM-TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
++I G ++L++WN +C+ T+ H + + V S S D ++++W
Sbjct: 171 --IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVW 224
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 134/302 (44%), Gaps = 22/302 (7%)
Query: 505 IRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNST 564
+R + V FS DG+ +AS G DK + V+ E + H + F + +
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 677
Query: 565 QLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNS-EIRFWN 623
+AT S DK V+IWD+A + TY H+ V F K N L + N ++ W+
Sbjct: 678 YIATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 624 LSQYSCARISKGGTVQV---RFQPRLGLLLAAASENVVSIFDVET--DRLTHSFKG---- 674
L+Q C G T V RF P LL + +++ + ++DV + +R + + K
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 796
Query: 675 -----HSTEIHSVC--WDTNGEYLASVSQDSVRVWSLASGECIHELSSSGN-KFHSCIFH 726
E+ C W +G+ + +++ V ++ + + + E+ + + C F
Sbjct: 797 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 856
Query: 727 PSYPTLMVIGGYQ-SLELWNM-AENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKI 784
P Y L VI Q +ELWN+ + K H + + SP +AS D+++++
Sbjct: 857 P-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 915
Query: 785 WK 786
W+
Sbjct: 916 WE 917
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 103/260 (39%), Gaps = 37/260 (14%)
Query: 510 SKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATS 569
++V+CC S + +A D + + + N + + H + ++F + L +S
Sbjct: 969 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1028
Query: 570 SFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSC 629
S D +++W+ ++ H V DF ++ S + ++ WN+
Sbjct: 1029 SEDSVIQVWNWQTGDYVF--LQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVIT--- 1081
Query: 630 ARISKGGTVQVRFQPRLGLLLAAA------------SENVVSIFDVETDRLTHSFKGHST 677
G ++ F G +L+ A ++ I+ + H KGH+
Sbjct: 1082 ------GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1135
Query: 678 EIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHEL---------SSSGNKFHSCIFHP 727
+ + +G LA+ + +R+W+++ G+ +H ++ G F P
Sbjct: 1136 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP 1195
Query: 728 SYPTLMVIGGYQSLELWNMA 747
TL+ GGY L+ WN+A
Sbjct: 1196 DSKTLVSAGGY--LKWWNVA 1213
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 26/287 (9%)
Query: 510 SKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATS 569
S + C FS L A V +WN+++ H + V F P+ + T+
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 570 SFDKTVRIWDAAK----PNFCLQ-----TYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIR 620
S D+T+R+W+ K L+ + + V+++D + + L G +I
Sbjct: 908 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD-NIRGLQLIAGKTG--QID 964
Query: 621 FWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIH 680
+ +Q SC +S P L + + + I ++ +R+ S GH +
Sbjct: 965 YLPEAQVSCCCLS----------PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVR 1014
Query: 681 SVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQ 739
+ + +G+ L S S+DSV +VW+ +G+ + + + S G
Sbjct: 1015 HIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDG-- 1072
Query: 740 SLELWNMAENKC-MTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
++++WN+ + H + + A S +S S DK+ KIW
Sbjct: 1073 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 487 SEQATETSKAFSFNEVS---SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQT 543
S A +T+K +SF+ +S ++ + V C FS DG LLA+ + ++ +WN+ + Q
Sbjct: 1109 STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1168
Query: 544 --ECTP-------DDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHN 594
C P H +TDV F P+S L ++ ++ W+ A + YT
Sbjct: 1169 LHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGT 1226
Query: 595 N 595
N
Sbjct: 1227 N 1227
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 134/302 (44%), Gaps = 22/302 (7%)
Query: 505 IRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNST 564
+R + V FS DG+ +AS G DK + V+ E + H + F + +
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 670
Query: 565 QLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNS-EIRFWN 623
+AT S DK V+IWD+A + TY H+ V F K N L + N ++ W+
Sbjct: 671 YIATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 624 LSQYSCARISKGGTVQV---RFQPRLGLLLAAASENVVSIFDVET--DRLTHSFKG---- 674
L+Q C G T V RF P LL + +++ + ++DV + +R + + K
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789
Query: 675 -----HSTEIHSVC--WDTNGEYLASVSQDSVRVWSLASGECIHELSSSGN-KFHSCIFH 726
E+ C W +G+ + +++ V ++ + + + E+ + + C F
Sbjct: 790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849
Query: 727 PSYPTLMVIGGYQ-SLELWNM-AENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKI 784
P Y L VI Q +ELWN+ + K H + + SP +AS D+++++
Sbjct: 850 P-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908
Query: 785 WK 786
W+
Sbjct: 909 WE 910
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 103/260 (39%), Gaps = 37/260 (14%)
Query: 510 SKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATS 569
++V+CC S + +A D + + + N + + H + ++F + L +S
Sbjct: 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1021
Query: 570 SFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSC 629
S D +++W+ ++ H V DF ++ S + ++ WN+
Sbjct: 1022 SEDSVIQVWNWQTGDYVF--LQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVIT--- 1074
Query: 630 ARISKGGTVQVRFQPRLGLLLAAA------------SENVVSIFDVETDRLTHSFKGHST 677
G ++ F G +L+ A ++ I+ + H KGH+
Sbjct: 1075 ------GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128
Query: 678 EIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHEL---------SSSGNKFHSCIFHP 727
+ + +G LA+ + +R+W+++ G+ +H ++ G F P
Sbjct: 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP 1188
Query: 728 SYPTLMVIGGYQSLELWNMA 747
TL+ GGY L+ WN+A
Sbjct: 1189 DSKTLVSAGGY--LKWWNVA 1206
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 26/287 (9%)
Query: 510 SKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATS 569
S + C FS L A V +WN+++ H + V F P+ + T+
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 570 SFDKTVRIWDAAK----PNFCLQ-----TYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIR 620
S D+T+R+W+ K L+ + + V+++D + + L G +I
Sbjct: 901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD-NIRGLQLIAGKTG--QID 957
Query: 621 FWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIH 680
+ +Q SC +S P L + + + I ++ +R+ S GH +
Sbjct: 958 YLPEAQVSCCCLS----------PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVR 1007
Query: 681 SVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQ 739
+ + +G+ L S S+DSV +VW+ +G+ + + + S G
Sbjct: 1008 HIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDG-- 1065
Query: 740 SLELWNMAENKC-MTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
++++WN+ + H + + A S +S S DK+ KIW
Sbjct: 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 487 SEQATETSKAFSFNEVS---SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQT 543
S A +T+K +SF+ +S ++ + V C FS DG LLA+ + ++ +WN+ + Q
Sbjct: 1102 STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161
Query: 544 --ECTP-------DDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHN 594
C P H +TDV F P+S L ++ ++ W+ A + YT
Sbjct: 1162 LHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGT 1219
Query: 595 N 595
N
Sbjct: 1220 N 1220
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 137/329 (41%), Gaps = 57/329 (17%)
Query: 509 SSKVTCCHFSSDGKLLASAGHDKKVVVWNM-------------------ENFQTECTPDD 549
+S V C FS+DG+ LA+ G +K V+ + EN T +P
Sbjct: 64 TSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 550 HNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDL 609
+I + V F P+ LAT + D+ +RIWD + GH + SLD+ P D
Sbjct: 123 DLYIRS-VCFSPDGKFLATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFP-SGDK 179
Query: 610 FCSCDGNSEIRFWNLSQYSCARI--SKGGTVQVRFQPRLGLLLAAAS-ENVVSIFDVET- 665
S G+ +R W+L C+ + G V P G +AA S + V ++D ET
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 666 ------DRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLA------------S 706
D S GH ++SV + +G+ + S S D SV++W+L S
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 707 GECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQS--LELWNMAE-NKCMTIAAH-DCVIS 762
G C E++ G+K + ++ G + + W+ N + + H + VIS
Sbjct: 300 GTC--EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 357
Query: 763 ALAQS-----PVTGMVASASHDKSVKIWK 786
+ P + A+ S D +IWK
Sbjct: 358 VAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 19/141 (13%)
Query: 664 ETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGECIHELS--SSGNK-- 719
E D H H++ + V + +GEYLA+ + +V+ ++ G + LS S+ NK
Sbjct: 52 EIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDP 111
Query: 720 --------------FHSCIFHPSYPTLMVIGGYQSLELWNMAENK-CMTIAAHDCVISAL 764
S F P L + + +W++ K M + H+ I +L
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 171
Query: 765 AQSPVTGMVASASHDKSVKIW 785
P + S S D++V+IW
Sbjct: 172 DYFPSGDKLVSGSGDRTVRIW 192
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 21/277 (7%)
Query: 487 SEQATETSKAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECT 546
+++ + KA + ++ I+ +V CC FS+D + +A+ DKKV +WN + T
Sbjct: 641 ADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHT 700
Query: 547 PDDHNHIITDVRFRPNSTQ--LATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP 604
D+H+ + F +S LAT S D +++WD + C T GH N V F P
Sbjct: 701 YDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSP 759
Query: 605 KKNDLFCSCDGNSEIRFW-----------NLSQYSCARISKGGTVQVRFQ----PRLGLL 649
+ L SC + ++ W N+ Q+ ++V + G
Sbjct: 760 -DDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGAR 818
Query: 650 LAAASENVVSIFDVETDRLTHSF-KGHSTEIHSVCWD-TNGEYLASVSQDSVRVWSLASG 707
+ A++N + +FD+ T L GH + I + N + ++SQ V +W+ S
Sbjct: 819 IMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSR 878
Query: 708 ECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELW 744
+ + + H +F P + + Q++ LW
Sbjct: 879 SKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 129/302 (42%), Gaps = 22/302 (7%)
Query: 505 IRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNST 564
+R + V FS DG+ +AS G DK + V+ E + H + F +
Sbjct: 617 VRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 676
Query: 565 QLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSE--IRFW 622
+AT S DK V+IW++ + TY H+ V F + L + G+S+ ++ W
Sbjct: 677 FIATCSVDKKVKIWNSMTGEL-VHTYDEHSEQVNCCHFTNSSHHLLLA-TGSSDCFLKLW 734
Query: 623 NLSQYSCARISKGGTVQV---RFQPRLGLLLAAASENVVSIFDVET--DRLTHSFK---- 673
+L+Q C G T V RF P LL + +++ + ++D + +R + + K
Sbjct: 735 DLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFL 794
Query: 674 -----GHSTEIHSVC--WDTNGEYLASVSQDSVRVWSLASGECIHELSSSGN-KFHSCIF 725
E+ C W +G + +++ + ++ + + + E+ + + C F
Sbjct: 795 NLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDF 854
Query: 726 HPSYPTLMVIGGYQSLELWNM-AENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKI 784
P +V +ELWN + +K H + + SP ++S D+++++
Sbjct: 855 SPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRL 914
Query: 785 WK 786
W+
Sbjct: 915 WE 916
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/255 (19%), Positives = 104/255 (40%), Gaps = 24/255 (9%)
Query: 508 SSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLA 567
+ ++V+CC S + +A + + + + N + + H + ++F + L
Sbjct: 966 TEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLI 1025
Query: 568 TSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNL--- 624
+SS D +++W+ + + C+ GH V DF KN S + ++ WN+
Sbjct: 1026 SSSDDAEIQVWNW-QLDKCI-FLRGHQETVK--DFRLLKNSRLLSWSFDGTVKVWNIITG 1081
Query: 625 ---SQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHS 681
+ C +G + + +++ I+ + H +GH+ +
Sbjct: 1082 NKEKDFVC---HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRC 1138
Query: 682 VCWDTNGEYLASVSQD-SVRVWSLASGECIH---ELSSSGNKFH-----SCIFHPSYPTL 732
+ + LA+ + +R+W++++GE +H LS G H F P L
Sbjct: 1139 SAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKML 1198
Query: 733 MVIGGYQSLELWNMA 747
+ GGY ++ WN+
Sbjct: 1199 ISAGGY--IKWWNVV 1211
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 114/290 (39%), Gaps = 32/290 (11%)
Query: 510 SKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATS 569
S + C FS L A V +WN ++ H + V F P+ + TS
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 570 SFDKTVRIWDAAKPNFCLQT---------YTGHNNHVMSLDF-HPKKNDLFCSCDGNS-E 618
S D+T+R+W+ K C + N VM L H ++ L +G + +
Sbjct: 907 SDDQTIRLWETKK--VCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLI---NGRTGQ 961
Query: 619 IRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTE 678
I + +Q SC +S P L + + I ++ +R+ S H
Sbjct: 962 IDYLTEAQVSCCCLS----------PHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKT 1011
Query: 679 IHSVCWDTNGEYLASVSQDS-VRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGG 737
+ + + + + L S S D+ ++VW+ +CI G++ F + ++
Sbjct: 1012 VWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF---LRGHQETVKDFRLLKNSRLLSWS 1068
Query: 738 YQ-SLELWNMAE-NKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
+ ++++WN+ NK H + + S +S S DK+ KIW
Sbjct: 1069 FDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 487 SEQATETSKAFSFN---EVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMEN--F 541
S A +T+K +SF+ + +R + V C FS D LLA+ + ++ +WN+ N
Sbjct: 1108 STSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGEL 1167
Query: 542 QTECTP------DDHNHIITDVRFRPNSTQLATS 569
C P H +TD+ F P+ L ++
Sbjct: 1168 LHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 485 NPSEQATETSKAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTE 544
NP ++E S + S+ V+ S++G SA D + +WN++N Q +
Sbjct: 46 NPDRHSSECSYGLPDRR---LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQ 102
Query: 545 CTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP 604
H + V F P++ Q+ + D +R+W+ G H +S H
Sbjct: 103 YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV----------KGECMHTLSRGAHT 152
Query: 605 KKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVRFQPRLG--LLLAAASENVVSIFD 662
+ SC VRF P L ++++ +N+V ++D
Sbjct: 153 D----WVSC--------------------------VRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 663 VETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLASGECIHELSSSGNKFH 721
+ T RL KGH+ + SV +G AS +D V R+W L GE + E+ ++G +
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM-AAGAPIN 241
Query: 722 SCIFHP 727
F P
Sbjct: 242 QICFSP 247
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 103/274 (37%), Gaps = 55/274 (20%)
Query: 524 LASAGHDKKVVVW--NMENFQTECT---PDD----HNHIITDVRFRPNSTQLATSSFDKT 574
+ S DK ++ W N + +EC+ PD H+ ++DV N ++S+D +
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 575 VRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISK 634
+R+W+ C + GH V+S+ F P + N+ +R WN+ +S+
Sbjct: 91 LRLWNLQNGQ-CQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNA-LRVWNVKGECMHTLSR 148
Query: 635 GGTVQ----VRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEY 690
G VRF P L + I S WD
Sbjct: 149 GAHTDWVSCVRFSPSL----------------------------DAPVIVSGGWD----- 175
Query: 691 LASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENK 750
+ V+VW LA+G + +L N S P LW++ + +
Sbjct: 176 ------NLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGE 229
Query: 751 CMTIAAHDCVISALAQSPVTGMVASASHDKSVKI 784
++ A I+ + SP + +A+ +K ++I
Sbjct: 230 ALSEMAAGAPINQICFSPNRYWMCAAT-EKGIRI 262
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 672 FKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYP 730
+GHS + V NG + S S D S+R+W+L +G+C ++ S F P
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 731 TLMVIGGYQSLELWNMAENKCM---TIAAHDCVISALAQSPVTG--MVASASHDKSVKIW 785
++ G +L +WN+ + +CM + AH +S + SP ++ S D VK+W
Sbjct: 123 QIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 107/247 (43%), Gaps = 32/247 (12%)
Query: 504 SIRKSSSKVTCCHFSSD-GKLLASAGHDKKVVVWNMENFQTECTPDD------------H 550
++R + VT D ++ SA DK +++W + T DD H
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKL-------TKDDKAYGVAQRRLTGH 429
Query: 551 NHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLF 610
+H + DV + + S+D +R+WD A + + GH V+S+ F N
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLA-AGVSTRRFVGHTKDVLSVAFS-LDNRQI 487
Query: 611 CSCDGNSEIRFWNLSQYSCARISKGGTVQ------VRFQPRL--GLLLAAASENVVSIFD 662
S + I+ WN IS+GG VRF P +++A+ + V +++
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 663 VETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDS-VRVWSLASGECIHELSSSGNKFH 721
+ +L + GH+ + +V +G AS +D V +W LA G+ ++ L ++ + H
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIH 606
Query: 722 SCIFHPS 728
+ F P+
Sbjct: 607 ALCFSPN 613
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%)
Query: 517 FSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVR 576
SSDG+ S D ++ +W++ + H + V F ++ Q+ ++S D+T++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 577 IWDAAKPNFCLQTYT----GHNNHVMSLDFHPKK-NDLFCSCDGNSEIRFWNLSQYSCAR 631
+W+ C T + GH + V + F P S + ++ WNLS
Sbjct: 498 LWNTLGE--CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS 555
Query: 632 ISKGGT---VQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNG 688
G T V P L + + VV ++D+ + +S + +S IH++C+ N
Sbjct: 556 TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNR 614
Query: 689 EYLASVSQDSVRVWSLASGECIHEL 713
+L + ++ +++W L S + +L
Sbjct: 615 YWLCAATEHGIKIWDLESKSIVEDL 639
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 17/213 (7%)
Query: 589 TYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQ----YSCARISKGG----TVQV 640
T H + V ++ D+ S + I W L++ Y A+ G V
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 641 RFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SV 699
L+ + + + ++D+ T F GH+ ++ SV + + + S S+D ++
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 700 RVWSLASGECIHELSSSGN---KFHSCI-FHPSY--PTLMVIGGYQSLELWNMAENKCM- 752
++W+ GEC + +S G + SC+ F P+ PT++ +++++WN++ K
Sbjct: 497 KLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS 555
Query: 753 TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
T+A H +S +A SP + AS D V +W
Sbjct: 556 TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 119/277 (42%), Gaps = 40/277 (14%)
Query: 520 DGKLLASAGHDKKVVVWNMENFQTE-----CTPDD----HNHIITDVRFRPNSTQLATSS 570
D +L S DK V++W + ++ E P HNH ++D+ + +SS
Sbjct: 38 DSPVLISGSRDKTVMIWKL--YEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 571 FDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNL------ 624
+DKT+R+WD + + + GH + V S+ F P N S EI+ WN+
Sbjct: 96 WDKTLRLWD-LRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKF 153
Query: 625 ---------SQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGH 675
SC R S + QP + + + +++ ++ ++FK H
Sbjct: 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAH 212
Query: 676 STEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMV 734
+ ++ + NG+Y+A+ +D + +W + + +G+ + F+P +
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKL-QWVA 271
Query: 735 IGGYQSLELWN-MAENKCMTIAAHDCVISALAQSPVT 770
+G Q ++++N M ++K A C I A P+T
Sbjct: 272 VGTDQGVKIFNLMTQSK-----APVCTIEA---EPIT 300
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 65/246 (26%)
Query: 562 NSTQLATSSFDKTVRIWDAAKPN----FCL--QTYTGHNNHVMSLDFHPKKNDLFCSCDG 615
+S L + S DKTV IW + F + + TGHN+ V L
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA-------------- 83
Query: 616 NSEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGH 675
LSQ +C IS ++ + + ++D+ T F GH
Sbjct: 84 --------LSQENCFAIS------------------SSWDKTLRLWDLRTGTTYKRFVGH 117
Query: 676 STEIHSVCWD-TNGEYLASVSQDSVRVWSLASGECIHELSSSGNKFHS----CI------ 724
+E++SV + N + L++ ++ +++W++ GEC + SS+ + HS C+
Sbjct: 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GEC--KFSSAEKENHSDWVSCVRYSPIM 174
Query: 725 -----FHPSYPTLMVIGGYQSLELWNMAENKCMTIAAHDCVISALAQSPVTGMVASASHD 779
P P +G L++WN T AH+ ++ L+ SP +A+ D
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKD 234
Query: 780 KSVKIW 785
K + IW
Sbjct: 235 KKLLIW 240
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 106/228 (46%), Gaps = 37/228 (16%)
Query: 510 SKVTCCHFSSDGKLLASAGHDKKVVVWNM--ENFQTECTPDDHNHIITDVRFRP-----N 562
S+V FS D + + SAG ++++ +WN+ E + ++H+ ++ VR+ P N
Sbjct: 119 SEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN 178
Query: 563 STQ-----LATSSFDKTVRIWDAAKPNFCLQ-TYTGHNNHVMSLDFHPKKNDLFCSCDG- 615
Q A+ +D +++W+ NF ++ T+ H ++V L P N + + G
Sbjct: 179 KVQPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISP--NGKYIATGGK 233
Query: 616 NSEIRFWNLSQ--YSCARISKGGTV-QVRFQPRLGLLLAAASENVVSIFD---------- 662
+ ++ W++ Y G T+ Q+ F P+L +A ++ V IF+
Sbjct: 234 DKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ-WVAVGTDQGVKIFNLMTQSKAPVC 292
Query: 663 -VETDRLTHSF--KGHSTEIHSVCWDTNGEYL-ASVSQDSVRVWSLAS 706
+E + +T + KG + + S+ W+ G+ L A + +R +S +
Sbjct: 293 TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 504 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNS 563
+ + S V S +GK +A+ G DKK+++W++ N D I + F P
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKL 267
Query: 564 TQLATSSFDKTVRIWD 579
+A + D+ V+I++
Sbjct: 268 QWVAVGT-DQGVKIFN 282
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 113/269 (42%), Gaps = 58/269 (21%)
Query: 523 LLASAGHDKKVVVWNME-NFQTECTP----DDHNHIITDVRFRPNSTQLATSSFDKTVRI 577
LL SA DK ++ W + + Q P H+HI+ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARI--SKG 635
WD A Q + GH + VMS+D KK + S + I+ W + A +
Sbjct: 92 WDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 636 GTVQVRFQPRLG------LLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGE 689
QVR P +++A ++ +V +++ ++ F GH++ I+++ +G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 690 YLASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAEN 749
+AS +D GE + LWN+A
Sbjct: 210 LIASAGKD---------GEIM--------------------------------LWNLAAK 228
Query: 750 KCM-TIAAHDCVISALAQSPVTGMVASAS 777
K M T++A D V S LA SP +A+A+
Sbjct: 229 KAMYTLSAQDEVFS-LAFSPNRYWLAAAT 256
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
V S + S V C ++DG SA DK + +W++ +T H + V
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP--KKND---LFCSCDGN 616
++ + + S DKT+++W CL T GHN+ V + P K +D S +
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 617 SEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
++ WNL+Q F +E D F GH+
Sbjct: 176 KMVKAWNLNQ----------------------------------FQIEAD-----FIGHN 196
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHP 727
+ I+++ +G +AS +D + +W+LA+ + ++ LS+ F S F P
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSP 247
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 56/199 (28%)
Query: 520 DGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWD 579
D + SAG+DK V WN+ FQ E HN I + P+ T +A++ D + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 580 --AAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGT 637
A K + L + V SL F P R+W
Sbjct: 225 LAAKKAMYTLSA----QDEVFSLAFSPN--------------RYW--------------- 251
Query: 638 VQVRFQPRLGLLLAAASENVVSIFDVE----TDRLTHSFKGHS--TEIHSV--CWDTNGE 689
LAAA+ + +F ++ D L F G+S E H+V W +G+
Sbjct: 252 ------------LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299
Query: 690 YL-ASVSQDSVRVWSLASG 707
L A + + +RVW + +
Sbjct: 300 TLFAGYTDNVIRVWQVMTA 318
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 17/213 (7%)
Query: 589 TYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLS----QYSC-ARISKGGTVQVR-- 641
T GHN V SL + +L S + + W L+ ++ R KG + V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 642 -FQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SV 699
L+A+ + + ++DV T F GH +++ SV D + S S+D ++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 700 RVWSLASGECIHELSSSGNKFHSCIFHPSYP------TLMVIGGYQSLELWNMAENKC-M 752
+VW++ G+C+ L + P+ T++ G + ++ WN+ + +
Sbjct: 132 KVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 753 TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
H+ I+ L SP ++ASA D + +W
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 113/269 (42%), Gaps = 58/269 (21%)
Query: 523 LLASAGHDKKVVVWNME-NFQTECTP----DDHNHIITDVRFRPNSTQLATSSFDKTVRI 577
LL SA DK ++ W + + Q P H+HI+ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARI--SKG 635
WD A Q + GH + VMS+D KK + S + I+ W + A +
Sbjct: 92 WDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 636 GTVQVRFQPRLG------LLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGE 689
QVR P +++A ++ +V +++ ++ F GH++ I+++ +G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 690 YLASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAEN 749
+AS +D GE + LWN+A
Sbjct: 210 LIASAGKD---------GEIM--------------------------------LWNLAAK 228
Query: 750 KCM-TIAAHDCVISALAQSPVTGMVASAS 777
K M T++A D V S LA SP +A+A+
Sbjct: 229 KAMYTLSAQDEVFS-LAFSPNRYWLAAAT 256
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
V S + S V C ++DG SA DK + +W++ +T H + V
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP--KKND---LFCSCDGN 616
++ + + S DKT+++W CL T GHN+ V + P K +D S +
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 617 SEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
++ WNL+Q F +E D F GH+
Sbjct: 176 KMVKAWNLNQ----------------------------------FQIEAD-----FIGHN 196
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHP 727
+ I+++ +G +AS +D + +W+LA+ + ++ LS+ F S F P
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSP 247
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 76/194 (39%), Gaps = 56/194 (28%)
Query: 520 DGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWD 579
D + SAG+DK V WN+ FQ E HN I + P+ T +A++ D + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 580 --AAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGT 637
A K + L + V SL F P R+W
Sbjct: 225 LAAKKAMYTLSA----QDEVFSLAFSPN--------------RYW--------------- 251
Query: 638 VQVRFQPRLGLLLAAASENVVSIFDVE----TDRLTHSFKGHS--TEIHSV--CWDTNGE 689
LAAA+ + +F ++ D L F G+S E H+V W +G+
Sbjct: 252 ------------LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299
Query: 690 YL-ASVSQDSVRVW 702
L A + + +RVW
Sbjct: 300 TLFAGYTDNVIRVW 313
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 17/213 (7%)
Query: 589 TYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLS----QYSC-ARISKGGTVQVR-- 641
T GHN V SL + +L S + + W L+ ++ R KG + V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 642 -FQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SV 699
L+A+ + + ++DV T F GH +++ SV D + S S+D ++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 700 RVWSLASGECIHELSSSGNKFHSCIFHPSYP------TLMVIGGYQSLELWNMAENKCMT 753
+VW++ G+C+ L + P+ T++ G + ++ WN+ + +
Sbjct: 132 KVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 754 -IAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
H+ I+ L SP ++ASA D + +W
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 113/269 (42%), Gaps = 58/269 (21%)
Query: 523 LLASAGHDKKVVVWNME-NFQTECTP----DDHNHIITDVRFRPNSTQLATSSFDKTVRI 577
LL SA DK ++ W + + Q P H+HI+ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARI--SKG 635
WD A Q + GH + VMS+D KK + S + I+ W + A +
Sbjct: 92 WDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 636 GTVQVRFQPRLG------LLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGE 689
QVR P +++A ++ +V +++ ++ F GH++ I+++ +G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 690 YLASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAEN 749
+AS +D GE + LWN+A
Sbjct: 210 LIASAGKD---------GEIM--------------------------------LWNLAAK 228
Query: 750 KCM-TIAAHDCVISALAQSPVTGMVASAS 777
K M T++A D V S LA SP +A+A+
Sbjct: 229 KAMYTLSAQDEVFS-LAFSPNRYWLAAAT 256
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
V S + S V C ++DG SA DK + +W++ +T H + V
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP--KKND---LFCSCDGN 616
++ + + S DKT+++W CL T GHN+ V + P K +D S +
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 617 SEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
++ WNL+Q F +E D F GH+
Sbjct: 176 KMVKAWNLNQ----------------------------------FQIEAD-----FIGHN 196
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHP 727
+ I+++ +G +AS +D + +W+LA+ + ++ LS+ F S F P
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSP 247
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 56/199 (28%)
Query: 520 DGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWD 579
D + SAG+DK V WN+ FQ E HN I + P+ T +A++ D + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 580 --AAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGT 637
A K + L + V SL F P R+W
Sbjct: 225 LAAKKAMYTLSA----QDEVFSLAFSPN--------------RYW--------------- 251
Query: 638 VQVRFQPRLGLLLAAASENVVSIFDVE----TDRLTHSFKGHS--TEIHSV--CWDTNGE 689
LAAA+ + +F ++ D L F G+S E H+V W +G+
Sbjct: 252 ------------LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299
Query: 690 YL-ASVSQDSVRVWSLASG 707
L A + + +RVW + +
Sbjct: 300 TLFAGYTDNVIRVWQVMTA 318
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 17/213 (7%)
Query: 589 TYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLS----QYSC-ARISKGGTVQVR-- 641
T GHN V SL + +L S + + W L+ ++ R KG + V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 642 -FQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SV 699
L+A+ + + ++DV T F GH +++ SV D + S S+D ++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 700 RVWSLASGECIHELSSSGNKFHSCIFHPSYP------TLMVIGGYQSLELWNMAENKC-M 752
+VW++ G+C+ L + P+ T++ G + ++ WN+ + +
Sbjct: 132 KVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 753 TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
H+ I+ L SP ++ASA D + +W
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 113/269 (42%), Gaps = 58/269 (21%)
Query: 523 LLASAGHDKKVVVWNME-NFQTECTP----DDHNHIITDVRFRPNSTQLATSSFDKTVRI 577
LL SA DK ++ W + + Q P H+HI+ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARI--SKG 635
WD A Q + GH + VMS+D KK + S + I+ W + A +
Sbjct: 92 WDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 636 GTVQVRFQPRLG------LLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGE 689
QVR P +++A ++ +V +++ ++ F GH++ I+++ +G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 690 YLASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAEN 749
+AS +D GE + LWN+A
Sbjct: 210 LIASAGKD---------GEIM--------------------------------LWNLAAK 228
Query: 750 KCM-TIAAHDCVISALAQSPVTGMVASAS 777
K M T++A D V S LA SP +A+A+
Sbjct: 229 KAMYTLSAQDEVFS-LAFSPNRYWLAAAT 256
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
V S + S V C ++DG SA DK + +W++ +T H + V
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP--KKND---LFCSCDGN 616
++ + + S DKT+++W CL T GHN+ V + P K +D S +
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 617 SEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
++ WNL+Q F +E D F GH+
Sbjct: 176 KMVKAWNLNQ----------------------------------FQIEAD-----FIGHN 196
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHP 727
+ I+++ +G +AS +D + +W+LA+ + ++ LS+ F S F P
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSP 247
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 56/199 (28%)
Query: 520 DGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWD 579
D + SAG+DK V WN+ FQ E HN I + P+ T +A++ D + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 580 --AAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGT 637
A K + L + V SL F P R+W
Sbjct: 225 LAAKKAMYTLSA----QDEVFSLAFSPN--------------RYW--------------- 251
Query: 638 VQVRFQPRLGLLLAAASENVVSIFDVE----TDRLTHSFKGHS--TEIHSV--CWDTNGE 689
LAAA+ + +F ++ D L F G+S E H+V W +G+
Sbjct: 252 ------------LAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQ 299
Query: 690 YL-ASVSQDSVRVWSLASG 707
L A + + +RVW + +
Sbjct: 300 TLFAGYTDNVIRVWQVMTA 318
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 17/213 (7%)
Query: 589 TYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLS----QYSC-ARISKGGTVQVR-- 641
T GHN V SL + +L S + + W L+ ++ R KG + V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 642 -FQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SV 699
L+A+ + + ++DV T F GH +++ SV D + S S+D ++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 700 RVWSLASGECIHELSSSGNKFHSCIFHPSYP------TLMVIGGYQSLELWNMAENKC-M 752
+VW++ G+C+ L + P+ T++ G + ++ WN+ + +
Sbjct: 132 KVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 753 TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
H+ I+ L SP ++ASA D + +W
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 113/269 (42%), Gaps = 58/269 (21%)
Query: 523 LLASAGHDKKVVVWNME-NFQTECTP----DDHNHIITDVRFRPNSTQLATSSFDKTVRI 577
LL SA DK ++ W + + Q P H+HI+ D + ++S+DKT+R+
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARI--SKG 635
WD A Q + GH + VMS+D KK + S + I+ W + A +
Sbjct: 86 WDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKGQCLATLLGHND 143
Query: 636 GTVQVRFQPRLG------LLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGE 689
QVR P +++A ++ +V +++ ++ F GH++ I+++ +G
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 203
Query: 690 YLASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAEN 749
+AS +D GE + LWN+A
Sbjct: 204 LIASAGKD---------GEIM--------------------------------LWNLAAK 222
Query: 750 KCM-TIAAHDCVISALAQSPVTGMVASAS 777
K M T++A D V S LA SP +A+A+
Sbjct: 223 KAMYTLSAQDEVFS-LAFSPNRYWLAAAT 250
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
V S + S V C ++DG SA DK + +W++ +T H + V
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP--KKND---LFCSCDGN 616
++ + + S DKT+++W CL T GHN+ V + P K +D S +
Sbjct: 112 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 169
Query: 617 SEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
++ WNL+Q F +E D F GH+
Sbjct: 170 KMVKAWNLNQ----------------------------------FQIEAD-----FIGHN 190
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHP 727
+ I+++ +G +AS +D + +W+LA+ + ++ LS+ F S F P
Sbjct: 191 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSP 241
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 56/199 (28%)
Query: 520 DGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWD 579
D + SAG+DK V WN+ FQ E HN I + P+ T +A++ D + +W+
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 580 --AAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGT 637
A K + L + V SL F P R+W
Sbjct: 219 LAAKKAMYTLSA----QDEVFSLAFSPN--------------RYW--------------- 245
Query: 638 VQVRFQPRLGLLLAAASENVVSIFDVE----TDRLTHSFKGHS--TEIHSV--CWDTNGE 689
LAAA+ + +F ++ D L F G+S E H+V W +G+
Sbjct: 246 ------------LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 293
Query: 690 YL-ASVSQDSVRVWSLASG 707
L A + + +RVW + +
Sbjct: 294 TLFAGYTDNVIRVWQVMTA 312
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 17/213 (7%)
Query: 589 TYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLS----QYSC-ARISKGGTVQVR-- 641
T GHN V SL + +L S + + W L+ ++ R KG + V+
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 642 -FQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SV 699
L+A+ + + ++DV T F GH +++ SV D + S S+D ++
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 700 RVWSLASGECIHELSSSGNKFHSCIFHPSYP------TLMVIGGYQSLELWNMAENKC-M 752
+VW++ G+C+ L + P+ T++ G + ++ WN+ + +
Sbjct: 126 KVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 184
Query: 753 TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
H+ I+ L SP ++ASA D + +W
Sbjct: 185 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 110/254 (43%), Gaps = 32/254 (12%)
Query: 480 GTLKRNPSEQATETS--KAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWN 537
G+ S A E S + F + ++ I ++V +S+DG LA+ DK V +W
Sbjct: 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Query: 538 M----ENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNF-CLQTYTG 592
E ++ +H+ + V + P+ LA+SS+D TVRIW ++ C+ G
Sbjct: 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG 195
Query: 593 HNNHVMSLDFHPKKNDLFCSCDG--NSEIRFWNL--------SQYSCARI----SKGGTV 638
H V S DF K +F C G +S +R W ++ C I K
Sbjct: 196 HEGTVWSSDF-DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY 254
Query: 639 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHST-----EIHSVCW-DTNGEYLA 692
V + GL+ + ++ V+++++ E D F + EI+ V W + NG+ +
Sbjct: 255 NVAWGFN-GLIASVGADGVLAVYE-EVDGEWKVFAKRALCHGVYEINVVKWLELNGKTIL 312
Query: 693 SVSQDS--VRVWSL 704
+ D V WSL
Sbjct: 313 ATGGDDGIVNFWSL 326
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 29/229 (12%)
Query: 498 SFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKV--VVWNMENFQTECTPDD--HNHI 553
S N + S++ K+ FS +LA+ D+K+ V ++F D+ H
Sbjct: 3 SINLIKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA 60
Query: 554 ITDVRFRPNSTQLATSSFDKTVRIW---DAAKPNF---CLQTYTGHNNHVMSLDFHPKKN 607
I V +RP+++ LA SFD TV IW ++A F L GH N V + + N
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW---SN 117
Query: 608 D--LFCSCDGNSEIRFWNL----SQYSCARISKGGTVQVR---FQPRLGLLLAAASENVV 658
D +C + + W +Y C + + + V+ + P LL +++ ++ V
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTV 177
Query: 659 SIF-DVETD-RLTHSFKGHSTEIHSVCWD-TNGEY-LASVSQDS-VRVW 702
I+ D + D GH + S +D T G + L S S DS VRVW
Sbjct: 178 RIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 63/159 (39%), Gaps = 53/159 (33%)
Query: 640 VRFQPRLGLLLAAASENVVSIFDVE--TDR-----LTHSFKGHSTEIHSVCWDTNGEYLA 692
V ++P LL A + ++ VSI+ E DR L +GH E+ V W +G YLA
Sbjct: 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 693 SVSQD-SVRVWSL-ASGE---CIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMA 747
+ S+D SV +W SGE CI L I+HPS
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS------------------- 164
Query: 748 ENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIWK 786
++AS+S+D +V+IWK
Sbjct: 165 ----------------------EALLASSSYDDTVRIWK 181
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 15/201 (7%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
V C + D +++ + D V VW++ + T H + +RF N+ + T S
Sbjct: 176 VLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSK 231
Query: 572 DKTVRIWDAAKPN--FCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSC 629
D+++ +WD A P + GH V +DF K S G+ I+ WN S
Sbjct: 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEF 288
Query: 630 ARISKG---GTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDT 686
R G G ++++ R L+++ +S+N + ++D+E +GH + + +D
Sbjct: 289 VRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD- 345
Query: 687 NGEYLASVSQDSVRVWSLASG 707
N ++ ++VW L +
Sbjct: 346 NKRIVSGAYDGKIKVWDLVAA 366
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 121/306 (39%), Gaps = 35/306 (11%)
Query: 498 SFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDV 557
S + ++S V C + D + + S D + +W+ EC H + +
Sbjct: 122 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVL 177
Query: 558 RFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNS 617
+ + + T S D TVR+WD L T H V+ L F+ N + +C +
Sbjct: 178 CLQYDERVIITGSSDSTVRVWDVNTGEM-LNTLIHHCEAVLHLRFN---NGMMVTCSKDR 233
Query: 618 EIRFWNL---SQYSCARISKGGTVQVR---FQPRLGLLLAAASENVVSIFDVETDRLTHS 671
I W++ + + R+ G V F + +++A+ + + +++ T +
Sbjct: 234 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRT 291
Query: 672 FKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYP 730
GH I C + S S D ++R+W + G C+ L + CI +
Sbjct: 292 LNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRCIRFDN-- 346
Query: 731 TLMVIGGYQ-SLELWNM---------AENKCM-TIAAHDCVISALAQSPVTGMVASASHD 779
+V G Y +++W++ A C+ T+ H + L + S+SHD
Sbjct: 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHD 404
Query: 780 KSVKIW 785
++ IW
Sbjct: 405 DTILIW 410
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 127/287 (44%), Gaps = 28/287 (9%)
Query: 523 LLASAGHDKKVVVWNMENFQT-----ECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRI 577
++ SA DK +++W + +T + H+H ++DV + + S+D T+R+
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWN---LSQYSCARISK 634
WD + + GH V+S+ F N S + I+ WN + +Y+ S
Sbjct: 113 WDLTTGT-TTRRFVGHTKDVLSVAF-SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH 170
Query: 635 GGTVQ-VRFQPRLG--LLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYL 691
V VRF P ++++ + +V ++++ +L + GH+ +++V +G
Sbjct: 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 230
Query: 692 ASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENK 750
AS +D +W L G+ ++ L G+ ++ F P+ L G S+++W++ E K
Sbjct: 231 ASGGKDGQAMLWDLNEGKHLYTL-DGGDIINALCFSPNRYWLCAATG-PSIKIWDL-EGK 287
Query: 751 CMTIAAHDCVIS-----------ALAQSPVTGMVASASHDKSVKIWK 786
+ VIS +LA S + + D V++W+
Sbjct: 288 IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 9/216 (4%)
Query: 504 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNS 563
++R S V+ SSDG+ S D + +W++ T H + V F ++
Sbjct: 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 140
Query: 564 TQLATSSFDKTVRIWDAAKPNFCLQTY--TGHNNHVMSLDFHPK-KNDLFCSCDGNSEIR 620
Q+ + S DKT+++W+ C T H+ V + F P N + SC + ++
Sbjct: 141 RQIVSGSRDKTIKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 621 FWNLS--QYSCARISKGGTVQ-VRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHST 677
WNL+ + I G + V P L + + ++D+ + ++ G
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258
Query: 678 EIHSVCWDTNGEYLASVSQDSVRVWSLASGECIHEL 713
I+++C+ N +L + + S+++W L + EL
Sbjct: 259 -INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 293
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 15/211 (7%)
Query: 589 TYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQ----YSCARISKGG----TVQV 640
T GHN V + P+ D+ S + I W L++ Y + + G V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 641 RFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SV 699
L+ + + + ++D+ T T F GH+ ++ SV + ++ + S S+D ++
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 700 RVWSLASGECIHELS-SSGNKFHSCI-FHP--SYPTLMVIGGYQSLELWNMAENKCMT-I 754
++W+ G C + + S +++ SC+ F P S P ++ G + +++WN+A K T
Sbjct: 153 KLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211
Query: 755 AAHDCVISALAQSPVTGMVASASHDKSVKIW 785
H ++ + SP + AS D +W
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 126/295 (42%), Gaps = 18/295 (6%)
Query: 504 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWN-MENFQTECTPDDHNHIITDVRFRPN 562
++R +K+ H+ +D +LL SA D K+++W+ + P + ++T + P+
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT-CAYAPS 119
Query: 563 STQLATSSFDKTVRIWDAAKPNFCLQT---YTGHNNHVMSLDFHPKKNDLFCSCDGNSEI 619
+A D I++ ++ GH ++ F N + S G++
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTS-SGDTTC 177
Query: 620 RFWNLSQYSCARIS---KGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
W++ G + + P L ++ A + ++DV +F GH
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 237
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT--LM 733
++I+++C+ NG A+ S D + R++ L + + ++ S + I S+ +
Sbjct: 238 SDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRL 295
Query: 734 VIGGYQSL--ELWN-MAENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
++ GY +W+ + ++ +A HD +S L + VA+ S D +KIW
Sbjct: 296 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 667 RLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIF 725
R + +GH +I+++ W T+ L S SQD + +W + +H + + +C +
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 726 HPS 728
PS
Sbjct: 117 APS 119
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 127/287 (44%), Gaps = 28/287 (9%)
Query: 523 LLASAGHDKKVVVWNMENFQT-----ECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRI 577
++ SA DK +++W + +T + H+H ++DV + + S+D T+R+
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWN---LSQYSCARISK 634
WD + + GH V+S+ F N S + I+ WN + +Y+ S
Sbjct: 90 WDLTTGT-TTRRFVGHTKDVLSVAF-SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH 147
Query: 635 GGTVQ-VRFQPRLG--LLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYL 691
V VRF P ++++ + +V ++++ +L + GH+ +++V +G
Sbjct: 148 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 207
Query: 692 ASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENK 750
AS +D +W L G+ ++ L G+ ++ F P+ L G S+++W++ E K
Sbjct: 208 ASGGKDGQAMLWDLNEGKHLYTL-DGGDIINALCFSPNRYWLCAATG-PSIKIWDL-EGK 264
Query: 751 CMTIAAHDCVIS-----------ALAQSPVTGMVASASHDKSVKIWK 786
+ VIS +LA S + + D V++W+
Sbjct: 265 IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 9/216 (4%)
Query: 504 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNS 563
++R S V+ SSDG+ S D + +W++ T H + V F ++
Sbjct: 58 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 564 TQLATSSFDKTVRIWDAAKPNFCLQTY--TGHNNHVMSLDFHPK-KNDLFCSCDGNSEIR 620
Q+ + S DKT+++W+ C T H+ V + F P N + SC + ++
Sbjct: 118 RQIVSGSRDKTIKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 621 FWNLS--QYSCARISKGGTVQ-VRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHST 677
WNL+ + I G + V P L + + ++D+ + ++ G
Sbjct: 176 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 235
Query: 678 EIHSVCWDTNGEYLASVSQDSVRVWSLASGECIHEL 713
I+++C+ N +L + + S+++W L + EL
Sbjct: 236 -INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 270
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 15/211 (7%)
Query: 589 TYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQ----YSCARISKGG----TVQV 640
T GHN V + P+ D+ S + I W L++ Y + + G V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 641 RFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SV 699
L+ + + + ++D+ T T F GH+ ++ SV + ++ + S S+D ++
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 700 RVWSLASGECIHELS-SSGNKFHSCI-FHP--SYPTLMVIGGYQSLELWNMAENKCMT-I 754
++W+ G C + + S +++ SC+ F P S P ++ G + +++WN+A K T
Sbjct: 130 KLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188
Query: 755 AAHDCVISALAQSPVTGMVASASHDKSVKIW 785
H ++ + SP + AS D +W
Sbjct: 189 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 126/295 (42%), Gaps = 18/295 (6%)
Query: 504 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWN-MENFQTECTPDDHNHIITDVRFRPN 562
++R +K+ H+ +D +LL SA D K+++W+ + P + ++T + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT-CAYAPS 108
Query: 563 STQLATSSFDKTVRIWDAAKPNFCLQT---YTGHNNHVMSLDFHPKKNDLFCSCDGNSEI 619
+A D I++ ++ GH ++ F N + S G++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTS-SGDTTC 166
Query: 620 RFWNLSQYSCARIS---KGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
W++ G + + P L ++ A + ++DV +F GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT--LM 733
++I+++C+ NG A+ S D + R++ L + + ++ S + I S+ +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRL 284
Query: 734 VIGGYQSL--ELWN-MAENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
++ GY +W+ + ++ +A HD +S L + VA+ S D +KIW
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 667 RLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIF 725
R + +GH +I+++ W T+ L S SQD + +W + +H + + +C +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 726 HPS 728
PS
Sbjct: 106 APS 108
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 126/295 (42%), Gaps = 18/295 (6%)
Query: 504 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWN-MENFQTECTPDDHNHIITDVRFRPN 562
++R +K+ H+ +D +LL SA D K+++W+ + P + ++T + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT-CAYAPS 108
Query: 563 STQLATSSFDKTVRIWDAAKPNFCLQT---YTGHNNHVMSLDFHPKKNDLFCSCDGNSEI 619
+A D I++ ++ GH ++ F N + S G++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTS-SGDTTC 166
Query: 620 RFWNLSQYSCARIS---KGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
W++ G + + P L ++ A + ++DV +F GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT--LM 733
++I+++C+ NG A+ S D + R++ L + + ++ S + I S+ +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRL 284
Query: 734 VIGGYQSL--ELWN-MAENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
++ GY +W+ + ++ +A HD +S L + VA+ S D +KIW
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 667 RLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIF 725
R + +GH +I+++ W T+ L S SQD + +W + +H + + +C +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 726 HPS 728
PS
Sbjct: 106 APS 108
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 126/295 (42%), Gaps = 18/295 (6%)
Query: 504 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWN-MENFQTECTPDDHNHIITDVRFRPN 562
++R +K+ H+ +D +LL SA D K+++W+ + P + ++T + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT-CAYAPS 108
Query: 563 STQLATSSFDKTVRIWDAAKPNFCLQT---YTGHNNHVMSLDFHPKKNDLFCSCDGNSEI 619
+A D I++ ++ GH ++ F N + S G++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTS-SGDTTC 166
Query: 620 RFWNLSQYSCARIS---KGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
W++ G + + P L ++ A + ++DV +F GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT--LM 733
++I+++C+ NG A+ S D + R++ L + + ++ S + I S+ +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRL 284
Query: 734 VIGGYQSL--ELWN-MAENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
++ GY +W+ + ++ +A HD +S L + VA+ S D +KIW
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 667 RLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIF 725
R + +GH +I+++ W T+ L S SQD + +W + +H + + +C +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 726 HPS 728
PS
Sbjct: 106 APS 108
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 126/295 (42%), Gaps = 18/295 (6%)
Query: 504 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWN-MENFQTECTPDDHNHIITDVRFRPN 562
++R +K+ H+ +D +LL SA D K+++W+ + P + ++T + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT-CAYAPS 108
Query: 563 STQLATSSFDKTVRIWDAAKPNFCLQT---YTGHNNHVMSLDFHPKKNDLFCSCDGNSEI 619
+A D I++ ++ GH ++ F N + S G++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTS-SGDTTC 166
Query: 620 RFWNLSQYSCARIS---KGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
W++ G + + P L ++ A + ++DV +F GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPT--LM 733
++I+++C+ NG A+ S D + R++ L + + ++ S + I S+ +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRL 284
Query: 734 VIGGYQSL--ELWN-MAENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
++ GY +W+ + ++ +A HD +S L + VA+ S D +KIW
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 667 RLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIF 725
R + +GH +I+++ W T+ L S SQD + +W + +H + + +C +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 726 HPS 728
PS
Sbjct: 106 APS 108
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 48/232 (20%)
Query: 502 VSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP 561
V S + S V C ++DG SA DK + +W++ +T H + V
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 562 NSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP--KKND---LFCSCDGN 616
++ + + S DKT+++W CL T GHN+ V + P K +D S +
Sbjct: 118 KASXIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 617 SEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
++ WNL+Q F +E D F GH+
Sbjct: 176 KXVKAWNLNQ----------------------------------FQIEAD-----FIGHN 196
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHP 727
+ I+++ +G +AS +D + +W+LA+ + + LS+ F S F P
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF-SLAFSP 247
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 58/269 (21%)
Query: 523 LLASAGHDKKVVVWNME-NFQTECTP----DDHNHIITDVRFRPNSTQLATSSFDKTVRI 577
LL SA DK ++ W + + Q P H+HI+ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARI--SKG 635
WD A Q + GH + V S+D KK S + I+ W + A +
Sbjct: 92 WDVATGE-TYQRFVGHKSDVXSVDID-KKASXIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 636 GTVQVRFQPRLG------LLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGE 689
QVR P +++A ++ V +++ ++ F GH++ I+++ +G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 690 YLASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAEN 749
+AS +D GE + LWN+A
Sbjct: 210 LIASAGKD---------GE--------------------------------IXLWNLAAK 228
Query: 750 KC-MTIAAHDCVISALAQSPVTGMVASAS 777
K T++A D V S LA SP +A+A+
Sbjct: 229 KAXYTLSAQDEVFS-LAFSPNRYWLAAAT 256
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 56/199 (28%)
Query: 520 DGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWD 579
D + SAG+DK V WN+ FQ E HN I + P+ T +A++ D + +W+
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 580 --AAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGT 637
A K + L + V SL F P R+W
Sbjct: 225 LAAKKAXYTLSA----QDEVFSLAFSPN--------------RYW--------------- 251
Query: 638 VQVRFQPRLGLLLAAASENVVSIFDVE----TDRLTHSFKGHS--TEIHSV--CWDTNGE 689
LAAA+ + +F ++ D L F G+S E H+V W +G+
Sbjct: 252 ------------LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299
Query: 690 YL-ASVSQDSVRVWSLASG 707
L A + + +RVW + +
Sbjct: 300 TLFAGYTDNVIRVWQVXTA 318
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 17/213 (7%)
Query: 589 TYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLS----QYSC-ARISKGGTVQVR-- 641
T GHN V SL + +L S + + W L+ ++ R KG + V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 642 -FQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SV 699
L+A+ + + ++DV T F GH +++ SV D + S S+D ++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 700 RVWSLASGECIHELSSSGNKFHSCIFHPSYP------TLMVIGGYQSLELWNMAENKC-M 752
+VW++ G+C+ L + P+ T++ G + ++ WN+ + +
Sbjct: 132 KVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEA 190
Query: 753 TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
H+ I+ L SP ++ASA D + +W
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 112/230 (48%), Gaps = 47/230 (20%)
Query: 520 DGKLLASAGHDKKVVVWNMEN--------FQTECT-----PDDHNHIITDVRFRPNSTQL 566
+G+ + S G D +V++++EN + C+ PD H + + V++ P+ T +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 567 ATSS-FDKTVRIWD------AAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEI 619
TSS FDKT+++WD A NF Y+ H + V + K+ L ++
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVST------KHCLVAVGTRGPKV 168
Query: 620 RFWNLSQYSCARISKG---GTVQVRFQPRLGLLLAAAS-ENVVSIFDV------------ 663
+ +L SC+ I +G + V + PR +LA AS ++ V ++DV
Sbjct: 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228
Query: 664 ----ETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDS-VRVWSLASGE 708
++ + + H+ +++ +C+ ++G +L +V D+ +R+W+ ++GE
Sbjct: 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 23/171 (13%)
Query: 550 HNHIITDVRFRPNSTQ-LATSSFDKTVRIWDAAKPNFCLQTYTGHNN------HVMSLDF 602
H I V + P LAT+S D V++WD + + CL T HN +
Sbjct: 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244
Query: 603 HPKKNDLFCSCDG--------NSEIRFWNLSQYSCARISKGGTVQ-----VRFQPRLGL- 648
+ K N L + DG ++ +R WN S ++ G ++F G
Sbjct: 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCS 304
Query: 649 --LLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD 697
+ + ++++ V + KGH + + +N + L S S+D
Sbjct: 305 SEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 100/235 (42%), Gaps = 7/235 (2%)
Query: 501 EVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFR 560
EV SI+ + + V F + + D ++ V+N + + H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 561 PNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIR 620
P + + S D TV++W+ QT+ GH + VM + F+PK F S + ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 621 FWNLSQ----YSCARISKGGTVQVRFQPRLG--LLLAAASENVVSIFDVETDRLTHSFKG 674
W+L Q ++ + G V + P ++ A+ + + I+D +T + +G
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 675 HSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPS 728
H + + + + S S+D ++++W+ ++ + L+ + HP+
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 13/209 (6%)
Query: 588 QTYTGHNNHVMSLDFHPKKNDLFCSC-DGNSEIRFWNLSQYSCARISKGGTVQVR---FQ 643
+T++ ++ V +DFHP + + + G EI WN R + VR F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEI--WNYETQVEVRSIQVTETPVRAGKFI 64
Query: 644 PRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVW 702
R ++ + + + +F+ T F+ H I S+ Y+ S S D +V++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 703 SLASGECIHELSSSGNKFHSCI-FHPSYPTLMVIGGY-QSLELWNMAE---NKCMTIAAH 757
+ + + + F C+ F+P P+ G +++++W++ + N +T
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 758 DCV-ISALAQSPVTGMVASASHDKSVKIW 785
V P + +AS D ++KIW
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIW 213
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 100/235 (42%), Gaps = 7/235 (2%)
Query: 501 EVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFR 560
EV SI+ + + V F + + D ++ V+N + + H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 561 PNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIR 620
P + + S D TV++W+ QT+ GH + VM + F+PK F S + ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 621 FWNLSQ----YSCARISKGGTVQVRFQPRLG--LLLAAASENVVSIFDVETDRLTHSFKG 674
W+L Q ++ + G V + P ++ A+ + + I+D +T + +G
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 675 HSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPS 728
H + + + + S S+D ++++W+ ++ + L+ + HP+
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 87/208 (41%), Gaps = 11/208 (5%)
Query: 588 QTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVR---FQP 644
+T++ ++ V +DFHP + + + + + WN R + VR F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 645 RLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWS 703
R ++ + + + +F+ T F+ H I S+ Y+ S S D +V++W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 704 LASGECIHELSSSGNKFHSCI-FHPSYPTLMVIGGY-QSLELWNMAE---NKCMTIAAHD 758
+ + + F C+ F+P P+ G +++++W++ + N +T
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 759 CV-ISALAQSPVTGMVASASHDKSVKIW 785
V P + +AS D ++KIW
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIW 213
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 30/231 (12%)
Query: 509 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLAT 568
+S +TC F + + + DK + V++ N + H+ + +++ + L +
Sbjct: 122 TSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVS 178
Query: 569 SSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQY 627
S D+TVR+WD K C + GHN+ V LD KN + ++ + W L +
Sbjct: 179 GSTDRTVRVWD-IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 628 SCAR-----------------------ISKGGTVQVRFQPRLG-LLLAAASENVVSIFDV 663
S + +G VR G ++++ + +N + ++DV
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 297
Query: 664 ETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHEL 713
+ + GH+ I+S +D + S S D ++R+W L +GE ++ L
Sbjct: 298 AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 108/260 (41%), Gaps = 73/260 (28%)
Query: 553 IITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCS 612
+IT ++F N + T + DK +R++D+ F LQ +GH+ V +L +
Sbjct: 124 VITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKY---------- 170
Query: 613 CDGNSEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSF 672
+ GG +L++ +++ V ++D++ TH F
Sbjct: 171 --------------------AHGG-----------ILVSGSTDRTVRVWDIKKGCCTHVF 199
Query: 673 KGHSTEIHSVCWDT----NGEYLASVSQD-SVRVWSLASGECIHELSSSGNK---FHSCI 724
+GH++ + C D N +Y+ + S+D ++ VW L + + + FH+
Sbjct: 200 EGHNSTVR--CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 725 FHPSYP-----------------TLMVIGGY-QSLELWNMAENKCMTI-AAHDCVISALA 765
+P + ++V G Y +L +W++A+ KC+ I + H I +
Sbjct: 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 766 QSPVTGMVASASHDKSVKIW 785
SAS D +++IW
Sbjct: 318 YDHERKRCISASMDTTIRIW 337
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 15/160 (9%)
Query: 518 SSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRI 577
S G ++ S +D ++VW++ + H I + + ++S D T+RI
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYS------CAR 631
WD + T GH V L K S + IR W+ + YS
Sbjct: 337 WDLENGEL-MYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYSRKFSYHHTN 392
Query: 632 ISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHS 671
+S T V +L + SEN +I+++ + +L H+
Sbjct: 393 LSAITTFYVSDN-----ILVSGSENQFNIYNLRSGKLVHA 427
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 521 GKLLASAGHDKKVVVWNMENFQTECTPDDHNHII--TDVRFRPNSTQLATSSFDKTVRIW 578
G +L S D+ V VW+++ + HN + D+ N + T S D T+ +W
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 579 DAAKP----------NFCLQTYTGHNN---------HVMSLDFHPKKNDLFCSCDGNSEI 619
K ++ L +T N H+ S+ ++ S ++ +
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 292
Query: 620 RFWNLSQYSCARISKGGTVQVR---FQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHS 676
W+++Q C I G T ++ + ++A+ + + I+D+E L ++ +GH+
Sbjct: 293 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT 352
Query: 677 TEIHSVCWDTNGEYLASVSQD-SVRVW 702
+ + + ++L S + D S+R W
Sbjct: 353 ALVGLL--RLSDKFLVSAAADGSIRGW 377
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 509 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLAT 568
+ ++ + + K SA D + +W++EN + T H ++ +R + L +
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL--SDKFLVS 367
Query: 569 SSFDKTVRIWDA 580
++ D ++R WDA
Sbjct: 368 AAADGSIRGWDA 379
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 100/235 (42%), Gaps = 7/235 (2%)
Query: 501 EVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFR 560
EV SI+ + + V F + + D ++ V+N + + H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 561 PNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIR 620
P + + S D TV++W+ QT+ GH + VM + F+PK F S + ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 621 FWNLSQ----YSCARISKGGTVQVRFQPRLG--LLLAAASENVVSIFDVETDRLTHSFKG 674
W+L Q ++ + G V + P ++ A+ + + I+D +T + +G
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 675 HSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPS 728
H + + + + S S+D ++++W+ ++ + L+ + HP+
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 87/208 (41%), Gaps = 11/208 (5%)
Query: 588 QTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVR---FQP 644
+T++ ++ V +DFHP + + + + + WN R + VR F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 645 RLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWS 703
R ++ + + + +F+ T F+ H I S+ Y+ S S D +V++W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 704 LASGECIHELSSSGNKFHSCI-FHPSYPTLMVIGGY-QSLELWNMAE---NKCMTIAAHD 758
+ + + F C+ F+P P+ G +++++W++ + N +T
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 759 CV-ISALAQSPVTGMVASASHDKSVKIW 785
V P + +AS D ++KIW
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIW 213
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 100/235 (42%), Gaps = 7/235 (2%)
Query: 501 EVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFR 560
EV SI+ + + V F + + D ++ V+N + + H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 561 PNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIR 620
P + + S D TV++W+ QT+ GH + VM + F+PK F S + ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 621 FWNLSQ----YSCARISKGGTVQVRFQPRLG--LLLAAASENVVSIFDVETDRLTHSFKG 674
W+L Q ++ + G V + P ++ A+ + + I+D +T + +G
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 675 HSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPS 728
H + + + + S S+D ++++W+ ++ + L+ + HP+
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 87/208 (41%), Gaps = 11/208 (5%)
Query: 588 QTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVR---FQP 644
+T++ ++ V +DFHP + + + + + WN R + VR F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 645 RLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWS 703
R ++ + + + +F+ T F+ H I S+ Y+ S S D +V++W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 704 LASGECIHELSSSGNKFHSCI-FHPSYPTLMVIGGY-QSLELWNMAE---NKCMTIAAHD 758
+ + + F C+ F+P P+ G +++++W++ + N +T
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 759 CV-ISALAQSPVTGMVASASHDKSVKIW 785
V P + +AS D ++KIW
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIW 213
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 31/189 (16%)
Query: 523 LLASAGHDKKVVVWNMENFQTE---CTPDDHNHIITDVRFRPNST-QLATSSFDKTVRIW 578
L S D+K+++W+ N T T D H + + F P S LAT S DKTV +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 579 DAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTV 638
D L ++ H + + + + P + S + + W+LS+ + T
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 363
Query: 639 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEY-LASVSQD 697
P L + GH+ +I W+ N + + SVS+D
Sbjct: 364 DAEDGPPELLFIHG---------------------GHTAKISDFSWNPNEPWIICSVSED 402
Query: 698 SV-RVWSLA 705
++ +VW +A
Sbjct: 403 NIMQVWQMA 411
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 544 ECTPD----DHNHIITDVRFRPN-STQLATSSFDKTVRIWDA-AKPNF-----CLQTYTG 592
EC PD H + + PN + L ++S D T+ +WD A P +TG
Sbjct: 172 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 231
Query: 593 HNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARIS---KGGTVQVR---FQPRL 646
H V + +H LF S + ++ W+ + ++ S T +V F P
Sbjct: 232 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 291
Query: 647 GLLLAAAS-ENVVSIFDVETDRLT-HSFKGHSTEIHSVCWDTNGE-YLASVSQD-SVRVW 702
+LA S + V+++D+ +L HSF+ H EI V W + E LAS D + VW
Sbjct: 292 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Query: 703 SLA 705
L+
Sbjct: 352 DLS 354
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 523 LLASAGHDKKVVVWNMENFQTECTPDD--------------HNHIITDVRFRPNSTQLAT 568
+LAS+G D+++ VW++ E + +D H I+D + PN +
Sbjct: 338 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 397
Query: 569 S-SFDKTVRIWDAAK 582
S S D +++W A+
Sbjct: 398 SVSEDNIMQVWQMAE 412
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 31/189 (16%)
Query: 523 LLASAGHDKKVVVWNMENFQTE---CTPDDHNHIITDVRFRPNST-QLATSSFDKTVRIW 578
L S D+K+++W+ N T T D H + + F P S LAT S DKTV +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 579 DAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTV 638
D L ++ H + + + + P + S + + W+LS+ + T
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 365
Query: 639 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEY-LASVSQD 697
P L + GH+ +I W+ N + + SVS+D
Sbjct: 366 DAEDGPPELLFIHG---------------------GHTAKISDFSWNPNEPWIICSVSED 404
Query: 698 SV-RVWSLA 705
++ +VW +A
Sbjct: 405 NIMQVWQMA 413
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 544 ECTPD----DHNHIITDVRFRPN-STQLATSSFDKTVRIWDA-AKPNF-----CLQTYTG 592
EC PD H + + PN + L ++S D T+ +WD A P +TG
Sbjct: 174 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 233
Query: 593 HNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARIS---KGGTVQVR---FQPRL 646
H V + +H LF S + ++ W+ + ++ S T +V F P
Sbjct: 234 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 293
Query: 647 GLLLAAAS-ENVVSIFDVETDRLT-HSFKGHSTEIHSVCWDTNGE-YLASVSQD-SVRVW 702
+LA S + V+++D+ +L HSF+ H EI V W + E LAS D + VW
Sbjct: 294 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Query: 703 SLA 705
L+
Sbjct: 354 DLS 356
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 523 LLASAGHDKKVVVWNMENFQTECTPDD--------------HNHIITDVRFRPNSTQLAT 568
+LAS+G D+++ VW++ E + +D H I+D + PN +
Sbjct: 340 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 399
Query: 569 S-SFDKTVRIWDAAK 582
S S D +++W A+
Sbjct: 400 SVSEDNIMQVWQMAE 414
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 31/189 (16%)
Query: 523 LLASAGHDKKVVVWNMENFQTE---CTPDDHNHIITDVRFRPNST-QLATSSFDKTVRIW 578
L S D+K+++W+ N T T D H + + F P S LAT S DKTV +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 579 DAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTV 638
D L ++ H + + + + P + S + + W+LS+ + T
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 361
Query: 639 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEY-LASVSQD 697
P L + GH+ +I W+ N + + SVS+D
Sbjct: 362 DAEDGPPELLFIHG---------------------GHTAKISDFSWNPNEPWIICSVSED 400
Query: 698 SV-RVWSLA 705
++ +VW +A
Sbjct: 401 NIMQVWQMA 409
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 544 ECTPD----DHNHIITDVRFRPN-STQLATSSFDKTVRIWDA-AKPNF-----CLQTYTG 592
EC PD H + + PN + L ++S D T+ +WD A P +TG
Sbjct: 170 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 229
Query: 593 HNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARIS---KGGTVQVR---FQPRL 646
H V + +H LF S + ++ W+ + ++ S T +V F P
Sbjct: 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289
Query: 647 GLLLAAAS-ENVVSIFDVETDRLT-HSFKGHSTEIHSVCWDTNGE-YLASVSQD-SVRVW 702
+LA S + V+++D+ +L HSF+ H EI V W + E LAS D + VW
Sbjct: 290 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Query: 703 SLA 705
L+
Sbjct: 350 DLS 352
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 49/256 (19%)
Query: 550 HNHIITDVRFRPNSTQLATSSFDKTVRIWDA-AKPNFCLQTYTGHNNHVMSLDF-HPKKN 607
HN +I D +LAT S DKT++I++ + + + T TGH V +D+ HPK
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 608 DLFCSCDGNSEIRFWN-----LSQYSCARISKGGTVQVRFQP-RLG-LLLAAASENVVSI 660
+ SC + ++ W SQ + + V++ P G LLL A+S+ VS+
Sbjct: 70 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129
Query: 661 FDVETDRLTHS--FKGHSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGECIHELSSSGN 718
+ + + T H+ ++S W A++ +D GE H +
Sbjct: 130 VEFKENGTTSPIIIDAHAIGVNSASWAP-----ATIEED---------GE--HNGTKESR 173
Query: 719 KFHSCIFHPSYPTLMVIGGYQSL-ELWNM---AENKCM--TIAAHDCVISALAQSPVTGM 772
KF V GG +L ++W A+ + T+ H + +A SP +
Sbjct: 174 KF-------------VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220
Query: 773 ---VASASHDKSVKIW 785
+AS S D++ IW
Sbjct: 221 RSYLASVSQDRTCIIW 236
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 49/256 (19%)
Query: 550 HNHIITDVRFRPNSTQLATSSFDKTVRIWDA-AKPNFCLQTYTGHNNHVMSLDF-HPKKN 607
HN +I D +LAT S DKT++I++ + + + T TGH V +D+ HPK
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 608 DLFCSCDGNSEIRFWN-----LSQYSCARISKGGTVQVRFQP-RLG-LLLAAASENVVSI 660
+ SC + ++ W SQ + + V++ P G LLL A+S+ VS+
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 661 FDVETDRLTHS--FKGHSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGECIHELSSSGN 718
+ + + T H+ ++S W A++ +D GE H +
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAP-----ATIEED---------GE--HNGTKESR 171
Query: 719 KFHSCIFHPSYPTLMVIGGYQSL-ELWNM---AENKCM--TIAAHDCVISALAQSPVTGM 772
KF V GG +L ++W A+ + T+ H + +A SP +
Sbjct: 172 KF-------------VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 773 ---VASASHDKSVKIW 785
+AS S D++ IW
Sbjct: 219 RSYLASVSQDRTCIIW 234
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 116/280 (41%), Gaps = 27/280 (9%)
Query: 509 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLAT 568
+S +TC F + + + DK + V++ N + H+ + +++ + L +
Sbjct: 122 TSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVS 178
Query: 569 SSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQY 627
S D+TVR+WD K C + GHN+ V LD KN + ++ + W L +
Sbjct: 179 GSTDRTVRVWDI-KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 628 SCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTN 687
S + G + L+ EN +GH + +V +
Sbjct: 238 SS--VPDHGE-----EHDYPLVFHTPEEN---------PYFVGVLRGHXASVRTVS--GH 279
Query: 688 GEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNM 746
G + S S D ++ VW +A +C++ LS ++ +S I+ + ++ +W++
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Query: 747 AENKC-MTIAAHDCVISALAQSPVTGMVASASHDKSVKIW 785
+ T+ H ++ L S + SA+ D S++ W
Sbjct: 340 ENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGW 377
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 15/160 (9%)
Query: 518 SSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRI 577
S G ++ S +D ++VW++ + H I + + ++S D T+RI
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYS------CAR 631
WD T GH V L K S + IR W+ + YS
Sbjct: 337 WDLENGELX-YTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYSRKFSYHHTN 392
Query: 632 ISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHS 671
+S T V +L + SEN +I+++ + +L H+
Sbjct: 393 LSAITTFYVSDN-----ILVSGSENQFNIYNLRSGKLVHA 427
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 108/256 (42%), Gaps = 49/256 (19%)
Query: 550 HNHIITDVRFRPNSTQLATSSFDKTVRIWDA-AKPNFCLQTYTGHNNHVMSLDF-HPKKN 607
HN +I D ++AT S DKT++I++ + + + T TGH V +D+ HPK
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 608 DLFCSCDGNSEIRFWN-----LSQYSCARISKGGTVQVRFQP-RLG-LLLAAASENVVSI 660
+ SC + ++ W SQ + + V++ P G +LL A+S+ VS+
Sbjct: 68 TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
Query: 661 FDVETDRLTHS--FKGHSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGECIHELSSSGN 718
+ + + T H+ ++S W A++ +D GE H +
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAP-----ATIEED---------GE--HNGTKESR 171
Query: 719 KFHSCIFHPSYPTLMVIGGYQSL-ELWNM---AENKCM--TIAAHDCVISALAQSPVTGM 772
KF V GG +L ++W A+ + T+ H + +A SP +
Sbjct: 172 KF-------------VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 773 ---VASASHDKSVKIW 785
+AS S D++ IW
Sbjct: 219 RSYMASVSQDRTCIIW 234
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 49/256 (19%)
Query: 550 HNHIITDVRFRPNSTQLATSSFDKTVRIWDA-AKPNFCLQTYTGHNNHVMSLDF-HPKKN 607
HN +I D +LAT S DKT++I++ + + + T TGH V +D+ HPK
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 608 DLFCSCDGNSEIRFWN-----LSQYSCARISKGGTVQVRFQP-RLG-LLLAAASENVVSI 660
+ SC + ++ W SQ + + V++ P G LLL A+S+ VS+
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 661 FDVETDRLTHS--FKGHSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGECIHELSSSGN 718
+ + + T H+ ++S W A++ +D GE H +
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAP-----ATIEED---------GE--HNGTKESR 171
Query: 719 KFHSCIFHPSYPTLMVIGGYQSL-ELWNM---AENKCM--TIAAHDCVISALAQSPVTGM 772
KF V GG +L ++W A+ + T+ H + +A SP +
Sbjct: 172 KF-------------VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 773 ---VASASHDKSVKIW 785
+AS S D++ IW
Sbjct: 219 RSYLASVSQDRTCIIW 234
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 549 DHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKND 608
+H+ I++ V + TQ + S D +++WD A+ L +Y H V + P K+
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 609 LFCSCDGNSEIRFWNL------SQYSCARISKGGTVQVRFQPRLGLLLAAASEN-VVSIF 661
+F SC ++ I W+ SQ C+ T + + P+ + EN VS+
Sbjct: 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT-SLAWHPQQSEVFVFGDENGTVSLV 242
Query: 662 DVETDRLTHSFKGHSTEIHSVCWDTNG-EYLASVSQD 697
D ++ S HS + + + + +LAS+S+D
Sbjct: 243 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 44/247 (17%)
Query: 501 EVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFR 560
++ SI FS D + LA+ H KV ++ +E+ + E + D I + +
Sbjct: 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173
Query: 561 PNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIR 620
P+ LA+ + D + I+D A L T GH + SL F P
Sbjct: 174 PDGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ------------- 219
Query: 621 FWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIH 680
LL+ A+ + + I+DV+ L + GH++ +
Sbjct: 220 ---------------------------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 252
Query: 681 SV--CWDTNGEYLASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGY 738
+V C D + +++S S SV+VW + + C+H ++ ++ + ++ +G
Sbjct: 253 NVAFCPD-DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311
Query: 739 QSLELWN 745
Q + +++
Sbjct: 312 QEIHIYD 318
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 92/232 (39%), Gaps = 20/232 (8%)
Query: 532 KVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDA----------A 581
KV W E + + + H + V A+SS D +R+WD A
Sbjct: 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA 120
Query: 582 KPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVR 641
P ++ ++ H K ++F G E YS K + +
Sbjct: 121 GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--------YSLDTRGKF-ILSIA 171
Query: 642 FQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDS-VR 700
+ P L + A + +++IFD+ T +L H+ +GH+ I S+ + + + L + S D ++
Sbjct: 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231
Query: 701 VWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENKCM 752
++ + LS + + F P + +S+++W++ C+
Sbjct: 232 IYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 39/193 (20%)
Query: 523 LLASAGHDKKVVVWNMENFQTECTP----DDHNHIITDVRFRPNST-QLATSSFDKTVRI 577
L S D+K+++W+ + T P D H + + F P S LAT S DKTV +
Sbjct: 244 LFGSVADDQKLMIWDTRS-NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQY---SCARISK 634
WD L T+ H + + + + P + S + + W+LS+ A ++
Sbjct: 303 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 362
Query: 635 GGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEY-LAS 693
G ++ F H GH+ +I W+ N + + S
Sbjct: 363 DGPPELLF--------------------------IHG--GHTAKISDFSWNPNEPWVICS 394
Query: 694 VSQDSV-RVWSLA 705
VS+D++ ++W +A
Sbjct: 395 VSEDNIMQIWQMA 407
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 563 STQLATSSFDKTVRIWD------AAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGN 616
S L ++S D TV +WD K +TGH+ V + +H LF S +
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 617 SEIRFWNLSQYSCAR---ISKGGTVQVR---FQPRLGLLLAAAS-ENVVSIFDVETDRLT 669
++ W+ + ++ + T +V F P +LA S + V+++D+ +L
Sbjct: 252 QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Query: 670 -HSFKGHSTEIHSVCWDTNGE-YLASVSQD-SVRVWSLA 705
H+F+ H EI V W + E LAS D + VW L+
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 523 LLASAGHDKKVVVWNMENFQTECTPDD--------------HNHIITDVRFRPNSTQLAT 568
+LAS+G D+++ VW++ E + +D H I+D + PN +
Sbjct: 334 ILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 393
Query: 569 S-SFDKTVRIWDAAK 582
S S D ++IW A+
Sbjct: 394 SVSEDNIMQIWQMAE 408
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 544 ECTPD----DHNHIITDVRFRPN-STQLATSSFDKTVRIWD-AAKPNF-----CLQTYTG 592
EC PD H + + PN S L ++S D T+ +WD +A P +TG
Sbjct: 166 ECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTG 225
Query: 593 HNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARIS---KGGTVQVR---FQPRL 646
H V + +H LF S + ++ W+ + ++ S T +V F P
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS 285
Query: 647 GLLLAAAS-ENVVSIFDVETDRLT-HSFKGHSTEIHSVCWDTNGE-YLASVSQD-SVRVW 702
+LA S + V+++D+ +L HSF+ H EI V W + E LAS D + VW
Sbjct: 286 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Query: 703 SLA 705
L+
Sbjct: 346 DLS 348
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 523 LLASAGHDKKVVVWNMENFQTE---CTPDDHNHIITDVRFRPNST-QLATSSFDKTVRIW 578
L S D+K+++W+ + T + D H + + F P S LAT S DKTV +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 579 DAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTV 638
D L ++ H + + + + P + S + + W+L SK G
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL--------SKIGEE 353
Query: 639 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEY-LASVSQD 697
Q G L GH+ +I W+ N + + SVS+D
Sbjct: 354 QSPEDAEDG-----------------PPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 396
Query: 698 SV-RVWSLA 705
++ +VW +A
Sbjct: 397 NIMQVWQMA 405
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 523 LLASAGHDKKVVVWNMENFQTECTPDD--------------HNHIITDVRFRPNSTQLAT 568
+LAS+G D+++ VW++ E +P+D H I+D + PN +
Sbjct: 332 ILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 391
Query: 569 S-SFDKTVRIWDAAK 582
S S D +++W A+
Sbjct: 392 SVSEDNIMQVWQMAE 406
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 41/294 (13%)
Query: 519 SDGKLLASAGHDKKVVVWN------MENFQTECTPDDHNHIITDVRFRPNSTQLATSSFD 572
S G +LA A D V +W+ ++ Q E P ++ I+ V + LA +
Sbjct: 125 SSGNVLAVA-LDNSVYLWSASSGDILQLLQME-QPGEY---ISSVAWIKEGNYLAVGTSS 179
Query: 573 KTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNS------EIRFWNLSQ 626
V++WD + L+ T H+ V SL + N S S ++R +++
Sbjct: 180 AEVQLWDVQQQKR-LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVR---VAE 231
Query: 627 YSCARISKGGTVQV---RFQPRLGLLLAAASENVVSIFDVETDR----LTHSFKGHSTEI 679
+ A +S G + +V R+ P L + ++N+V+++ +F H +
Sbjct: 232 HHVATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 290
Query: 680 HSVCW-DTNGEYLAS---VSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVI 735
+V W LA+ S +R+W++ SG C+ + + ++ S ++ P Y L+
Sbjct: 291 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 349
Query: 736 GGY--QSLELWNMAE-NKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIWK 786
G+ L +W K + H + +L SP VASA+ D+++++W+
Sbjct: 350 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 15/182 (8%)
Query: 500 NEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTP----DDHNHIIT 555
+ V+++ S +V ++ DG+ LAS G+D V VW + P H +
Sbjct: 232 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 291
Query: 556 DVRFRP-NSTQLAT--SSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCS 612
V + P S LAT + D+ +RIW+ CL H+ V S+ + P +L
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ-VCSILWSPHYKELISG 349
Query: 613 CD-GNSEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHS 671
+++ W + KG T +V L L ++ V S ET RL
Sbjct: 350 HGFAQNQLVIWKYPTMAKVAELKGHTSRV-----LSLTMSPDGATVASAAADETLRLWRC 404
Query: 672 FK 673
F+
Sbjct: 405 FE 406
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 41/294 (13%)
Query: 519 SDGKLLASAGHDKKVVVWN------MENFQTECTPDDHNHIITDVRFRPNSTQLATSSFD 572
S G +LA A D V +W+ ++ Q E P ++ I+ V + LA +
Sbjct: 114 SSGNVLAVA-LDNSVYLWSASSGDILQLLQME-QPGEY---ISSVAWIKEGNYLAVGTSS 168
Query: 573 KTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNS------EIRFWNLSQ 626
V++WD + L+ T H+ V SL + N S S ++R +++
Sbjct: 169 AEVQLWDVQQQKR-LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVR---VAE 220
Query: 627 YSCARISKGGTVQV---RFQPRLGLLLAAASENVVSIFDVETDR----LTHSFKGHSTEI 679
+ A +S G + +V R+ P L + ++N+V+++ +F H +
Sbjct: 221 HHVATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 279
Query: 680 HSVCW-DTNGEYLAS---VSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVI 735
+V W LA+ S +R+W++ SG C+ + + ++ S ++ P Y L+
Sbjct: 280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 338
Query: 736 GGY--QSLELWNMAE-NKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIWK 786
G+ L +W K + H + +L SP VASA+ D+++++W+
Sbjct: 339 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 15/182 (8%)
Query: 500 NEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTP----DDHNHIIT 555
+ V+++ S +V ++ DG+ LAS G+D V VW + P H +
Sbjct: 221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 280
Query: 556 DVRFRP-NSTQLAT--SSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCS 612
V + P S LAT + D+ +RIW+ CL H+ V S+ + P +L
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ-VCSILWSPHYKELISG 338
Query: 613 CD-GNSEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHS 671
+++ W + KG T +V L L ++ V S ET RL
Sbjct: 339 HGFAQNQLVIWKYPTMAKVAELKGHTSRV-----LSLTMSPDGATVASAAADETLRLWRC 393
Query: 672 FK 673
F+
Sbjct: 394 FE 395
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 39/193 (20%)
Query: 523 LLASAGHDKKVVVWNMENFQTECTP----DDHNHIITDVRFRPNST-QLATSSFDKTVRI 577
L S D+K+ +W+ + T P D H + + F P S LAT S DKTV +
Sbjct: 244 LFGSVADDQKLXIWDTRS-NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 578 WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQY---SCARISK 634
WD L T+ H + + + + P + S + + W+LS+ A ++
Sbjct: 303 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 362
Query: 635 GGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEY-LAS 693
G ++ F H GH+ +I W+ N + + S
Sbjct: 363 DGPPELLF--------------------------IHG--GHTAKISDFSWNPNEPWVICS 394
Query: 694 VSQDSV-RVWSLA 705
VS+D++ ++W A
Sbjct: 395 VSEDNIXQIWQXA 407
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 563 STQLATSSFDKTVRIWD------AAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGN 616
S L ++S D TV +WD K +TGH+ V + +H LF S +
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 617 SEIRFWNLSQYSCAR---ISKGGTVQVR---FQPRLGLLLAAAS-ENVVSIFDVETDRLT 669
++ W+ + ++ + T +V F P +LA S + V+++D+ +L
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Query: 670 -HSFKGHSTEIHSVCWDTNGE-YLASVSQD-SVRVWSLA 705
H+F+ H EI V W + E LAS D + VW L+
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 97/248 (39%), Gaps = 49/248 (19%)
Query: 549 DHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQT----YTGHNNHVMSLDFHP 604
+H+H T + P+ A+ VRIWD + L+T ++G + S D
Sbjct: 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI-SWDSES 115
Query: 605 KKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVR------FQP-RLGLLLAAASENV 657
K+ + G RF ++ + + T Q R F+P R +++ + +N
Sbjct: 116 KR----IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 171
Query: 658 VSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSVRVWSLASGECIHELSSSG 717
V+IF+ + +F H+ +HSV ++ +G AS D
Sbjct: 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG------------------- 212
Query: 718 NKFHSCIFHPSYPTLMVIGGYQSLELWNMAENKCMTIAAHDCVISALAQSPVTGMVASAS 777
T+++ G + + E+ + AH + L SP +ASAS
Sbjct: 213 -------------TIVLYNGVDGTKT-GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258
Query: 778 HDKSVKIW 785
DK++KIW
Sbjct: 259 ADKTIKIW 266
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 499 FNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWN-MENFQTECTPDD------HN 551
F S+ + + V ++ DG L AS G D +V++N ++ +T DD H+
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239
Query: 552 HIITDVRFRPNSTQLATSSFDKTVRIWDAA 581
+ + + P+ T++A++S DKT++IW+ A
Sbjct: 240 GSVFGLTWSPDGTKIASASADKTIKIWNVA 269
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 498 SFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNM-ENFQTECTPD--DHNHII 554
S +EV +I + ++T FS++G L + +KV+ +++ NF+ T H +
Sbjct: 481 SVSEVKTIVHPA-EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 539
Query: 555 TDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHN-----NHVMSLDFHPKKNDL 609
V + P++ +LAT S D +V +W+ KP+ G + N V+ L+
Sbjct: 540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-----ETT 594
Query: 610 FCSCDGNSEIRFWNL 624
S +S I+FWN+
Sbjct: 595 IVSAGQDSNIKFWNV 609
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 513 TCCHFSSDGKLLASAGHDKKVVVWNMENFQ-TECTPDDHNHIITDVRFRPNSTQLATSSF 571
+C S+D + +A G D KV V+ + +E H IT V F N L +
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ 511
Query: 572 DKTVRIWDAAKPNFCL---QTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQ 626
+ V + A NF L ++T H V + + P L NS I WN+++
Sbjct: 512 SRKVIPYSVAN-NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI-VWNMNK 567
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 129/330 (39%), Gaps = 46/330 (13%)
Query: 496 AFSFNEVS-----SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDH 550
A SFN +++ S KV ++ + + SA D +++VWN Q H
Sbjct: 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH 107
Query: 551 NHIITDVRFRPNSTQLATSSFDKTVRIW--------DAAKPNFCLQTYTGHNNHVMSLDF 602
+ + F PN +A D I+ D P + TGH + S +
Sbjct: 108 CPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMP--VSRVLTGHKGYASSCQY 165
Query: 603 HPKKNDLFCSCDGNSEIRFWNLSQYSCARIS-------KGGTVQVRF----QPRLGLLLA 651
P + + G+ W+++ + RIS G T V + ++
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVT--TGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223
Query: 652 AASENVVSIFDVE-TDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLASGEC 709
+ + V ++D+ T R ++ GH +I+SV + +G+ + S D + R++ + +G
Sbjct: 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 710 IHELSSSGNK-------FHSCIFHPSYPTLMVIGGYQS--LELWN-----MAENKCMTIA 755
+ + ++ S F S ++ GY + +W+ M N
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAF--SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN 341
Query: 756 AHDCVISALAQSPVTGMVASASHDKSVKIW 785
+H+ IS L S + + S DK++KIW
Sbjct: 342 SHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 550 HNHIITDVRFRPNSTQLATSSFDKTVRIWDA-AKPNFCLQTYTGHNNHVMSLDF-HPKKN 607
HN I D + AT S DKT++I++ + + + T TGH V +D+ HPK
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 608 DLFCSCDGNSEIRFWN-----LSQYSCARISKGGTVQVRFQP-RLG-LLLAAASENVVSI 660
+ SC + ++ W SQ + + V++ P G LL A+S+ VS+
Sbjct: 68 TILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSV 127
Query: 661 FDVETDRLTHS--FKGHSTEIHSVCW 684
+ + + T H+ ++S W
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASW 153
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 31/163 (19%)
Query: 564 TQLATSSFDKTVRIWDAAKPNFC-LQTYTGHNNHVMSLDFHPKKND---LFCSCDGN-SE 618
T LA+ S+D V IW + + + H+ V S+ + P + L S DG S
Sbjct: 68 TILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSV 127
Query: 619 IRF-----------------WNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIF 661
+ F N + ++ A I + G + R + ++N+V I+
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK--FVTGGADNLVKIW 185
Query: 662 ----DVETDRLTHSFKGHSTEIHSVCWDTN---GEYLASVSQD 697
D +T L + +GHS + V W Y ASVSQD
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQD 228
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 41/294 (13%)
Query: 519 SDGKLLASAGHDKKVVVWN------MENFQTECTPDDHNHIITDVRFRPNSTQLATSSFD 572
S G +LA A D V +W+ ++ Q E P ++ I+ V + LA +
Sbjct: 34 SSGNVLAVA-LDNSVYLWSASSGDILQLLQME-QPGEY---ISSVAWIKEGNYLAVGTSS 88
Query: 573 KTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNS------EIRFWNLSQ 626
V++WD + L+ T H+ V SL + N S S ++R +++
Sbjct: 89 AEVQLWDVQQQKR-LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVR---VAE 140
Query: 627 YSCARISKGGTVQV---RFQPRLGLLLAAASENVVSIFDVETDR----LTHSFKGHSTEI 679
+ A +S G + +V R+ P L + ++N+V+++ +F H +
Sbjct: 141 HHVATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 199
Query: 680 HSVCW-DTNGEYLAS---VSQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVI 735
+V W LA+ S +R+W++ SG C+ + + ++ S ++ P Y L+
Sbjct: 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 258
Query: 736 GGY--QSLELWNMAE-NKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIWK 786
G+ L +W K + H + +L SP VASA+ D+++++W+
Sbjct: 259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 15/182 (8%)
Query: 500 NEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTP----DDHNHIIT 555
+ V+++ S +V ++ DG+ LAS G+D V VW + P H +
Sbjct: 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 200
Query: 556 DVRFRP-NSTQLAT--SSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCS 612
V + P S LAT + D+ +RIW+ CL H+ V S+ + P +L
Sbjct: 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ-VCSILWSPHYKELISG 258
Query: 613 CD-GNSEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHS 671
+++ W + KG T +V L L ++ V S ET RL
Sbjct: 259 HGFAQNQLVIWKYPTMAKVAELKGHTSRV-----LSLTMSPDGATVASAAADETLRLWRC 313
Query: 672 FK 673
F+
Sbjct: 314 FE 315
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 647 GLLLAAA-SENVVSIFDVETDRLTHSFKGHSTEIHSVCW-DTNGEYLAS---VSQDSVRV 701
GL LA+ ++NVV I+D + + H+ + +V W LA+ +
Sbjct: 229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288
Query: 702 WSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGY--QSLELWNMAEN---KCMTIAA 756
W+ A+G ++ + + G++ S I+ P +M G+ +L +W+ + + K + I A
Sbjct: 289 WNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347
Query: 757 HDCVISALAQSPVTGMVASASHDKSVKIWK 786
HD + A SP ++++A+ D+++K W+
Sbjct: 348 HDTRVLYSALSPDGRILSTAASDENLKFWR 377
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 500 NEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRF 559
+++ +++ SS+V + SDG LAS G+D V +W+ + + T +HN + V +
Sbjct: 208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW 267
Query: 560 RP-NSTQLAT--SSFDKTVRIWDAA 581
P S LAT + DK + W+AA
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAA 292
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/349 (18%), Positives = 125/349 (35%), Gaps = 91/349 (26%)
Query: 489 QATETSKAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVW-----NMENFQT 543
+ E F +++ +KV C + D + + S+ D KV+VW N E+ T
Sbjct: 44 ERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT 103
Query: 544 ------------------ECTPDDHNHIITDVRFRPNST--------------------- 564
C D+ + + F N
Sbjct: 104 MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT 163
Query: 565 ----QLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIR 620
Q+ T+S D T +WD LQ++ GH V+ LD P + GN+
Sbjct: 164 NSDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSET-------GNT--- 212
Query: 621 FWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIH 680
++ + ++D+ + + +F+ H ++++
Sbjct: 213 ----------------------------FVSGGCDKKAMVWDMRSGQCVQAFETHESDVN 244
Query: 681 SVCWDTNGEYLASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQ 739
SV + +G+ AS S D + R++ L + + S F + S ++ GY
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304
Query: 740 --SLELWNMAENKCMTIA-AHDCVISALAQSPVTGMVASASHDKSVKIW 785
++ +W++ + ++I H+ +S L SP S S D ++++W
Sbjct: 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 37/132 (28%)
Query: 586 CLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVRFQPR 645
C++ Y GH N + L FHP+ +L S + +R WN+
Sbjct: 143 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-------------------- 182
Query: 646 LGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSL 704
++ +V+IF +GH E+ S +D GE + S D S+++W +
Sbjct: 183 --------TDTLVAIFG--------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Query: 705 ASGECIHELSSS 716
S ++ + S
Sbjct: 227 NSKRMMNAIKES 238
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 638 VQVRFQPRLG--LLLAAASENVVSIFDVETD---RLTHSFKGHSTE--IHSVCW--DTNG 688
VQ + + G L+ A N V++++ + RL S+ + ++ W D+N
Sbjct: 60 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT 119
Query: 689 EY-LASV--SQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMV-IGGYQSLELW 744
+ L +V S+ +R+ + + +CI GN + FHP P L++ + +L LW
Sbjct: 120 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 179
Query: 745 NMAENKCMTIAA-----HDCVISALAQSPVTGMVASASHDKSVKIWK 786
N+ + + I D V+SA + + S D S+K+W+
Sbjct: 180 NIQTDTLVAIFGGVEGHRDEVLSA-DYDLLGEKIMSCGMDHSLKLWR 225
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 9/174 (5%)
Query: 549 DHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKND 608
+H+ I+ + + TQ + D +V++WD ++ L++Y H++ V + P K+
Sbjct: 137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV-LKSYNAHSSEVNCVAACPGKDT 195
Query: 609 LFCSCDGNSEIRFWNLSQYSCA-RI----SKGGTVQVRFQPRLGLLLAAASEN-VVSIFD 662
+F SC + I W+ + A RI S V + P A E VS+ +
Sbjct: 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN 255
Query: 663 VETDRLTHSFKGHSTEIHSVCWDTNGE-YLASVSQD-SVRVWSLASGECIHELS 714
++ + HS I + + + +LAS+S+D +V V E +LS
Sbjct: 256 IKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS 309
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
Query: 519 SDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRP-NSTQLATSSFDKTVRI 577
SDG S G D V VW++ + + H+ + V P T + D + +
Sbjct: 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 578 WDAAKPNFCLQT-YTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARIS 633
WD KP + + + S+ +HP+K+D F D + N+ A+ S
Sbjct: 209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS 265
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 37/132 (28%)
Query: 586 CLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVRFQPR 645
C++ Y GH N + L FHP+ +L S + +R WN+
Sbjct: 102 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-------------------- 141
Query: 646 LGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSL 704
++ +V+IF +GH E+ S +D GE + S D S+++W +
Sbjct: 142 --------TDTLVAIFG--------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Query: 705 ASGECIHELSSS 716
S ++ + S
Sbjct: 186 NSKRMMNAIKES 197
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 638 VQVRFQPRLG--LLLAAASENVVSIFDVETD---RLTHSFKGHSTE--IHSVCW--DTNG 688
VQ + + G L+ A N V++++ + RL S+ + ++ W D+N
Sbjct: 19 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT 78
Query: 689 EY-LASV--SQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMV-IGGYQSLELW 744
+ L +V S+ +R+ + + +CI GN + FHP P L++ + +L LW
Sbjct: 79 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 138
Query: 745 NMAENKCMTIAA-----HDCVISALAQSPVTGMVASASHDKSVKIWK 786
N+ + + I D V+SA + + S D S+K+W+
Sbjct: 139 NIQTDTLVAIFGGVEGHRDEVLSA-DYDLLGEKIMSCGMDHSLKLWR 184
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 37/132 (28%)
Query: 586 CLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVRFQPR 645
C++ Y GH N + L FHP+ +L S + +R WN+
Sbjct: 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-------------------- 146
Query: 646 LGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSL 704
++ +V+IF +GH E+ S +D GE + S D S+++W +
Sbjct: 147 --------TDTLVAIFG--------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Query: 705 ASGECIHELSSS 716
S ++ + S
Sbjct: 191 NSKRMMNAIKES 202
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 638 VQVRFQPRLG--LLLAAASENVVSIFDVETD---RLTHSFKGHSTE--IHSVCW--DTNG 688
VQ + + G L+ A N V++++ + RL S+ + ++ W D+N
Sbjct: 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT 83
Query: 689 EY-LASV--SQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMV-IGGYQSLELW 744
+ L +V S+ +R+ + + +CI GN + FHP P L++ + +L LW
Sbjct: 84 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143
Query: 745 NMAENKCMTIAA-----HDCVISALAQSPVTGMVASASHDKSVKIWK 786
N+ + + I D V+SA + + S D S+K+W+
Sbjct: 144 NIQTDTLVAIFGGVEGHRDEVLSA-DYDLLGEKIMSCGMDHSLKLWR 189
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 37/132 (28%)
Query: 586 CLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVRFQPR 645
C++ Y GH N + L FHP+ +L S + +R WN+
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-------------------- 145
Query: 646 LGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSL 704
++ +V+IF +GH E+ S +D GE + S D S+++W +
Sbjct: 146 --------TDTLVAIFG--------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 705 ASGECIHELSSS 716
S ++ + S
Sbjct: 190 NSKRMMNAIKES 201
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 638 VQVRFQPRLG--LLLAAASENVVSIFDVETD---RLTHSFKGHSTE--IHSVCW--DTNG 688
VQ + + G L+ A N V++++ + RL S+ + ++ W D+N
Sbjct: 23 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT 82
Query: 689 EY-LASV--SQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMV-IGGYQSLELW 744
+ L +V S+ +R+ + + +CI GN + FHP P L++ + +L LW
Sbjct: 83 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 745 NMAENKCMTIAA-----HDCVISALAQSPVTGMVASASHDKSVKIWK 786
N+ + + I D V+SA + + S D S+K+W+
Sbjct: 143 NIQTDTLVAIFGGVEGHRDEVLSA-DYDLLGEKIMSCGMDHSLKLWR 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 37/132 (28%)
Query: 586 CLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVRFQPR 645
C++ Y GH N + L FHP+ +L S + +R WN+
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-------------------- 145
Query: 646 LGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSL 704
++ +V+IF +GH E+ S +D GE + S D S+++W +
Sbjct: 146 --------TDTLVAIFG--------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 705 ASGECIHELSSS 716
S ++ + S
Sbjct: 190 NSKRMMNAIKES 201
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 638 VQVRFQPRLG--LLLAAASENVVSIFDVETD---RLTHSFKGHSTE--IHSVCW--DTNG 688
VQ + + G L+ A N V++++ + RL S+ + ++ W D+N
Sbjct: 23 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT 82
Query: 689 EY-LASV--SQDSVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMV-IGGYQSLELW 744
+ L +V S+ +R+ + + +CI GN + FHP P L++ + +L LW
Sbjct: 83 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 745 NMAENKCMTIAA-----HDCVISALAQSPVTGMVASASHDKSVKIWK 786
N+ + + I D V+SA + + S D S+K+W+
Sbjct: 143 NIQTDTLVAIFGGVEGHRDEVLSA-DYDLLGEKIMSCGMDHSLKLWR 188
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 16/213 (7%)
Query: 507 KSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQL 566
K++++VTC +S DG + + + ++ +WN + H I V++ + T +
Sbjct: 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVL-NFHRAPIVSVKWNKDGTHI 164
Query: 567 ATSSFDKTVRIWDA----AKPNFCLQTYTGHN----NHV----MSLDFHPKKNDLFCSCD 614
+ + +W+ +F L+ G + NH + +D +D F
Sbjct: 165 ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224
Query: 615 GNSEIRFWNLSQYSCA--RISKGGTVQV-RFQPRLGLLLAAASENVVSIFDVETDRLTHS 671
I + +++ + I G + V F LLL+A+ + + I+ +
Sbjct: 225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC 284
Query: 672 FKGHSTEIHSVCWDTNGEYLASVSQDSVRVWSL 704
F GHS I S W + + ++ SVR+WSL
Sbjct: 285 FYGHSQSIVSASWVGDDKVISCSMDGSVRLWSL 317
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 543 TECTPDD----HNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVM 598
TE TP H+ I+ + F + L ++S D T+RIW N + GH+ ++
Sbjct: 235 TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIV 293
Query: 599 SLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARIS 633
S + + CS DG +R W+L Q + +S
Sbjct: 294 SASWVGDDKVISCSMDG--SVRLWSLKQNTLLALS 326
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 96/269 (35%), Gaps = 70/269 (26%)
Query: 550 HNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKP-NFCLQTYTGHNNHVMSLDF-HPKKN 607
H +I D + T+LAT S D++V+I+D + GH V + + HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 608 DLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAASENVVSIFDVETDR 667
++ SC + ++ W + GT +
Sbjct: 72 NILASCSYDRKVIIWR---------EENGTWE---------------------------- 94
Query: 668 LTHSFKGHSTEIHSVCWDTN--GEYLASVSQDSVRVWSLASGECIHELSSSGNKFH---- 721
+H GH + ++SVCW + G LA S D +GE E+ N
Sbjct: 95 KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN 154
Query: 722 -----------SCIFHPS-----YPTLMVIGGYQSL-ELWNMAEN----KCMTIAAHDCV 760
S I HPS Y GG +L +LW E+ + + AH
Sbjct: 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214
Query: 761 ISALAQSPVTGM----VASASHDKSVKIW 785
+ +A +P G+ +AS S D V IW
Sbjct: 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 37/240 (15%)
Query: 521 GKLLASAGHDKKVVVWNMENFQTECTPDD--HNHIITDVRFRPNS--TQLATSSFDKTVR 576
G +LAS +D+KV++W EN E + + H+ + V + P+ LA S D +
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 577 IWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGG 636
L TYTG + N C+ S W + + I
Sbjct: 131 ----------LLTYTGEGQ----WEVKKINNAHTIGCNAVS----WAPAVVPGSLIDHPS 172
Query: 637 TVQVRFQPRLGLLLAAASENVVSIFDVETD---RLTHSFKGHSTEIHSVCWDTN----GE 689
+ + R + +N++ ++ E D + + HS + V W +
Sbjct: 173 GQKPNYIKRFA---SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 690 YLASVSQDS-VRVWSLASGECIHELSSSGNKFHSCIFHPSYP----TLMVIGGYQSLELW 744
+AS SQD V +W+ +KF+ ++H S+ L V GG + LW
Sbjct: 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 25/200 (12%)
Query: 515 CHFSSDGKLLASAGHDKKVVVWN----MENFQTECTPDDHNHIITD---VRFRPNSTQLA 567
C S ++ S DK VW + N Q HN + D V F N +
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQA------HNASVWDAKVVSFSEN--KFL 159
Query: 568 TSSFDKTVRIWDAAKPNFCLQTYTG-HNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQ 626
T+S DKT+++W K ++T++G HN+ V L + F SC + I+ +
Sbjct: 160 TASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDXHT 214
Query: 627 YSCARISKGG---TVQVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVC 683
R +G ++ P G +++ + V I+ E L + I SV
Sbjct: 215 GDVLRTYEGHESFVYCIKLLPN-GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD 273
Query: 684 WDTNGEYLASVSQDSVRVWS 703
+NG+ + S + VR++S
Sbjct: 274 CXSNGDIIVGSSDNLVRIFS 293
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 6/144 (4%)
Query: 566 LATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLS 625
+ + S+DKT ++W + LQ HN V + F + + I+ W +
Sbjct: 117 VISGSWDKTAKVWKEGSLVYNLQ---AHNASVWDAKVVSFSENKFLTASADKTIKLWQ-N 172
Query: 626 QYSCARISKGGTVQVRFQPRL--GLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVC 683
S VR + G ++ +++ ++ + D T + +++GH + ++ +
Sbjct: 173 DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIK 232
Query: 684 WDTNGEYLASVSQDSVRVWSLASG 707
NG+ ++ +VR+WS +G
Sbjct: 233 LLPNGDIVSCGEDRTVRIWSKENG 256
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 691 LASVSQD-SVRVWSLASGECIHELSSSGNKFHSCIFHPSYPTLMVIGGYQS----LELWN 745
+ASVS+D +VR+WS + + + +G F + + + S L++ GG + + L+
Sbjct: 32 VASVSRDGTVRLWS-KDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFA 90
Query: 746 MA-ENKCMTIAAHDCVISALAQSPVTGMVASASHDKSVKIWK 786
+ E+ T+ H + +L+ G+V S S DK+ K+WK
Sbjct: 91 TSGEDPLYTLIGHQGNVCSLSFQD--GVVISGSWDKTAKVWK 130
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 550 HNHIITDVRFRPNSTQ-LATSSFDKTVRIWDA----AKPNFCLQTYTGHNNHVMSLDFHP 604
H +T V P LAT+S D+TV+IWD K +F H + V + F P
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS--LPHRHPVNAACFSP 307
Query: 605 KKNDLFCSCDGNSEIRFWNLSQYSC 629
L + D SEIR ++ SQ+ C
Sbjct: 308 DGARLL-TTDQKSEIRVYSASQWDC 331
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 550 HNHIITDVRFRPNSTQ-LATSSFDKTVRIWDA----AKPNFCLQTYTGHNNHVMSLDFHP 604
H +T V P LAT+S D+TV+IWD K +F H + V + F P
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS--LPHRHPVNAACFSP 306
Query: 605 KKNDLFCSCDGNSEIRFWNLSQYSC 629
L + D SEIR ++ SQ+ C
Sbjct: 307 DGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 550 HNHIITDVRFRPNSTQ-LATSSFDKTVRIWDA----AKPNFCLQTYTGHNNHVMSLDFHP 604
H +T V P LAT+S D+TV+IWD K +F H + V + F P
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS--LPHRHPVNAACFSP 306
Query: 605 KKNDLFCSCDGNSEIRFWNLSQYSC 629
L + D SEIR ++ SQ+ C
Sbjct: 307 DGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 510 SKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATS 569
S++T F G+ L S+ D ++ +W++++ T H +TD+ + ++
Sbjct: 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA 199
Query: 570 SFDKTVRIWD 579
S D T+R+W+
Sbjct: 200 SLDGTIRLWE 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 510 SKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATS 569
S++T F G+ L S+ D ++ +W++++ T H +TD+ + ++
Sbjct: 137 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA 196
Query: 570 SFDKTVRIWD 579
S D T+R+W+
Sbjct: 197 SLDGTIRLWE 206
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 521 GKLLASAGHDKKVVVWNMENFQTECTPDDHNHIIT---------DVRFRPN--STQLATS 569
G+++ASA +DK V +W + Q EC+ N + T V+F P +LA
Sbjct: 69 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL 128
Query: 570 SFDKTVRIWDAAKPN 584
D +R++DA +P+
Sbjct: 129 GNDGILRLYDALEPS 143
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 40/116 (34%)
Query: 674 GHSTEIHSVCWDTNGEYLASVSQDS-VRVWSLASGECIHELSSSGNKFHSCIFHPSYPTL 732
GH +H V +D G ++A+ S D ++V+ L ELS S
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDS---------------- 50
Query: 733 MVIGGYQSLELWNMAENKCMTIAAHDCVISALA-QSPVTG-MVASASHDKSVKIWK 786
W AHD I A+ SP G ++ASAS+DK+VK+W+
Sbjct: 51 -----------WR----------AHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 521 GKLLASAGHDKKVVVWNMENFQTECTPDDHNHIIT---------DVRFRPN--STQLATS 569
G+++ASA +DK V +W + Q EC+ N + T V+F P +LA
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL 130
Query: 570 SFDKTVRIWDAAKPN 584
D +R++DA +P+
Sbjct: 131 GNDGILRLYDALEPS 145
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 40/116 (34%)
Query: 674 GHSTEIHSVCWDTNGEYLASVSQDS-VRVWSLASGECIHELSSSGNKFHSCIFHPSYPTL 732
GH +H V +D G ++A+ S D ++V+ L ELS S
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDS---------------- 52
Query: 733 MVIGGYQSLELWNMAENKCMTIAAHDCVISALA-QSPVTG-MVASASHDKSVKIWK 786
W AHD I A+ SP G ++ASAS+DK+VK+W+
Sbjct: 53 -----------WR----------AHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 521 GKLLASAGHDKKVVVWNMENFQTECTPDDHNHIIT---------DVRFRPN--STQLATS 569
G+++ASA +DK V +W + Q EC+ N + T V+F P +LA
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL 130
Query: 570 SFDKTVRIWDAAKPN 584
D +R++DA +P+
Sbjct: 131 GNDGILRLYDALEPS 145
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 40/116 (34%)
Query: 674 GHSTEIHSVCWDTNGEYLASVSQDS-VRVWSLASGECIHELSSSGNKFHSCIFHPSYPTL 732
GH +H V +D G ++A+ S D ++V+ L ELS S
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDS---------------- 52
Query: 733 MVIGGYQSLELWNMAENKCMTIAAHDCVISALA-QSPVTG-MVASASHDKSVKIWK 786
W AHD I A+ SP G ++ASAS+DK+VK+W+
Sbjct: 53 -----------WR----------AHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 30/143 (20%)
Query: 592 GHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARISKGGTVQVRFQP------- 644
GH V+ + + P +++ S + + W I GG V +P
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE--------IPDGGLVLPLREPVITLEGH 130
Query: 645 --RLGL----------LLAAASENVVSIFDVETDR--LTHSFKGHSTEIHSVCWDTNGEY 690
R+G+ LL+A +NV+ ++DV T LT H I+SV W +G
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190
Query: 691 LASVSQDS-VRVWSLASGECIHE 712
+ + +D VRV G + E
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAE 213
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 550 HNHIITDVRFRP-NSTQLATSSFDKTVRIWDAAKPNFCLQ------TYTGHNNHVMSLDF 602
H + D+ + P N +A+ S D TV +W+ L T GH V + +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 603 HPKKNDLFCSCDGNSEIRFWNL 624
HP ++ S ++ I W++
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDV 161
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 523 LLASAGHDKKVVVWNMENFQTECT--PDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDA 580
+L SAG D ++VW++ T PD H I V + + + TS DK VR+ +
Sbjct: 146 VLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205
Query: 581 AK 582
K
Sbjct: 206 RK 207
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 36/162 (22%)
Query: 573 KTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCARI 632
KT R+ D P C GH V+ + + P +++ S + + W I
Sbjct: 66 KTGRV-DKNVPLVC-----GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE--------I 111
Query: 633 SKGGTVQVRFQP---------RLGL----------LLAAASENVVSIFDVETDR--LTHS 671
GG V +P R+G+ LL+A +NV+ ++DV T LT
Sbjct: 112 PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171
Query: 672 FKGHSTEIHSVCWDTNGEYLASVSQDS-VRVWSLASGECIHE 712
H I+SV W +G + + +D VRV G + E
Sbjct: 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 523 LLASAGHDKKVVVWNMENFQTECT--PDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDA 580
+L SAG D ++VW++ T PD H I V + + + TS DK VR+ +
Sbjct: 146 VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205
Query: 581 AK 582
K
Sbjct: 206 RK 207
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 38/252 (15%)
Query: 498 SFNEVSSIRKSSSKVTCCHFSS-DGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITD 556
+ N ++ SS V F++ +LAS G++ ++ +W+M +CT N
Sbjct: 102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM----NKCTESPSN----- 152
Query: 557 VRFRPNSTQLATSSFDKTVRI-WDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCS-CD 614
+ P + + SS D+ + + W+ + + G +N D KK + S
Sbjct: 153 --YTPLTPGQSMSSVDEVISLAWNQSLAHVF--ASAGSSNFASIWDLKAKKEVIHLSYTS 208
Query: 615 GNSEIRFWNLSQYSCARISKGGTVQVRFQPRLGLLLAAAS----ENVVSIFDVETDR--L 668
NS I+ Q S V + P+ +A A+ + + I+D+ L
Sbjct: 209 PNSGIK----QQLSV----------VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL 254
Query: 669 THSFKGHSTEIHSVCWDTNGEYL--ASVSQDSVRVWSLASGECIHELSSSGNKFHSCIFH 726
+GH I S+ W E+L +S ++V +W+ S E + + + GN F
Sbjct: 255 QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA 314
Query: 727 PSYPTLMVIGGY 738
P P L +
Sbjct: 315 PEAPDLFACASF 326
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 515 CHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQL-ATSSFDK 573
CH D LL S+G D V++WN E+ + + +F P + L A +SFD
Sbjct: 271 CH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328
Query: 574 TVRI 577
+ +
Sbjct: 329 KIEV 332
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 639 QVRFQPRLGLLLAAASENVVSI-FDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD 697
QV++ LL + + ++ S+ + + +RL + GH+ I S+ D +Y + S D
Sbjct: 37 QVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-TLDGHTGTIWSIDVDCFTKYCVTGSAD 95
Query: 698 -SVRVWSLASGECI 710
S+++W +++G+C+
Sbjct: 96 YSIKLWDVSNGQCV 109
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 512 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
+T ++ +G LL S D VW N + T D H I + + T S
Sbjct: 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA 94
Query: 572 DKTVRIWDAAKPNFCLQTY 590
D ++++WD + C+ T+
Sbjct: 95 DYSIKLWDVSNGQ-CVATW 112
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 513 TCCHFSSDGKLLASAGHDKKVVVWNMEN-FQTECTPDDHNHIITDVRFRPNSTQLATSSF 571
T +S+ GK + + D K+ +++ N ++ + D H I+D++F P+ T TSS
Sbjct: 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR 238
Query: 572 DKTVRIWDAA 581
D + D +
Sbjct: 239 DTNSFLVDVS 248
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 739 QSLELWNMAENKCMTIAAHDCVISAL--AQSPVTGMVASASHDKSVKIW 785
++ ++W+++ N+ + IA HD + + ++P V + S DK++K W
Sbjct: 108 KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 517 FSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRF--RPNSTQLATSSFDKT 574
+S DG + +A DK +W++ + Q H+ + + + PN + + T S+DKT
Sbjct: 94 WSDDGSKVFTASCDKTAKMWDLSSNQA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKT 152
Query: 575 VRIWD--AAKPNFCLQ 588
++ WD ++ P LQ
Sbjct: 153 LKFWDTRSSNPMMVLQ 168
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 62/170 (36%), Gaps = 17/170 (10%)
Query: 413 AVAMSGSMQHVSNVPKGLMMYGSDGTGGHASSTNQLDDMEHFGDIGS---LDDNVESFLS 469
AV +S +HV KG + G+ S +QLD + I S L D + +
Sbjct: 56 AVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIV 114
Query: 470 QDDGDGRDLFGTLKRNPSEQATETSKAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGH 529
+ ++ P +A TS A + ++ S D K+ S
Sbjct: 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALA-------------ISPDSKVCFSCCS 161
Query: 530 DKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWD 579
D + VW++ N H + + + T+L T D TVR WD
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 718 NKFHSCIFHPSYPTLMVIGGYQSLELWNMAE-----NKCMTIAAHDCVISALAQSPVTGM 772
N SC P TL+V G +L +W++A +T +A C ALA SP + +
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY--ALAISPDSKV 155
Query: 773 VASASHDKSVKIW 785
S D ++ +W
Sbjct: 156 CFSCCSDGNIAVW 168
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 550 HNHIITDVRFRPNSTQL-ATSSFDKTVRIWDA--AKPNFCLQTYTGHNNHVMSLDFHPKK 606
H +T F P L ATSS D TV++WD K H V + F+P
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 607 NDLFCSCDGNSEIRFWNLSQYS 628
+ + D +EIR ++ +S
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWS 283
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 550 HNHIITDVRFRPNSTQL-ATSSFDKTVRIWDA--AKPNFCLQTYTGHNNHVMSLDFHPKK 606
H +T F P L ATSS D TV++WD K H V + F+P
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 607 NDLFCSCDGNSEIRFWNLSQYS 628
+ + D +EIR ++ +S
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWS 284
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 565 QLATSSFDKTVRIWDAAK---PNFCLQTYTGHNNH----VMSLDFHPKKNDLFCSCDGNS 617
++ T S D TV++WD + P ++ G N V + + ++ + C+ N
Sbjct: 131 EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG 190
Query: 618 EIRFWNLSQYSCARIS--KGGTVQVRFQPR---LGLLLAAASENVVSIFDVETDRLTHSF 672
+I+ ++L + + K G + F + + L+A + E +FD+ T T F
Sbjct: 191 DIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250
Query: 673 KGHSTEIH-SVCW 684
S + H S W
Sbjct: 251 ASVSEKAHKSTVW 263
>pdb|3TY5|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
pdb|3TY5|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
Length = 413
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 15/64 (23%)
Query: 523 LLASAG--HDKKVVVWNMENFQTECTPDDH-----NHIITDVRFRPNSTQLATSSFDKTV 575
+LA+ G H K +W+M+ CT DD NHI+ DV S DK +
Sbjct: 249 ILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDV--------TDAESVDKGI 300
Query: 576 RIWD 579
+ W+
Sbjct: 301 KWWE 304
>pdb|3TY8|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
pdb|3TY8|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
Length = 413
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 15/64 (23%)
Query: 523 LLASAG--HDKKVVVWNMENFQTECTPDDH-----NHIITDVRFRPNSTQLATSSFDKTV 575
+LA+ G H K +W+M+ CT DD NHI+ DV S DK +
Sbjct: 249 ILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDV--------TDAESVDKGI 300
Query: 576 RIWD 579
+ W+
Sbjct: 301 KWWE 304
>pdb|3TY9|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|C Chain C, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|D Chain D, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
Length = 393
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 15/64 (23%)
Query: 523 LLASAG--HDKKVVVWNMENFQTECTPDDH-----NHIITDVRFRPNSTQLATSSFDKTV 575
+LA+ G H K +W+M+ CT DD NHI+ DV S DK +
Sbjct: 229 ILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDV--------TDAESVDKGI 280
Query: 576 RIWD 579
+ W+
Sbjct: 281 KWWE 284
>pdb|4DRF|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4DRF|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
Length = 427
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 15/64 (23%)
Query: 523 LLASAG--HDKKVVVWNMENFQTECTPDDH-----NHIITDVRFRPNSTQLATSSFDKTV 575
+LA+ G H K +W+M+ CT DD NHI+ DV S DK +
Sbjct: 263 ILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDV--------TDAESVDKGI 314
Query: 576 RIWD 579
+ W+
Sbjct: 315 KWWE 318
>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
Length = 365
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 639 QVRFQPRLGLLLAAASENVVSIFDV-ETDRLTHSFKGHST-EIHSVCWDTNGEYLASVSQ 696
++ + R G + A AS V +I + + LT F+ + E+ + + T+G+ +A ++
Sbjct: 137 KLVYISREGTVAAIASSKVPAIXRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITG 196
Query: 697 DSVRVWSLASGECI 710
S+ V S +G CI
Sbjct: 197 SSLEVISTVTGSCI 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,245,731
Number of Sequences: 62578
Number of extensions: 800030
Number of successful extensions: 2486
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 375
length of query: 786
length of database: 14,973,337
effective HSP length: 107
effective length of query: 679
effective length of database: 8,277,491
effective search space: 5620416389
effective search space used: 5620416389
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)