Query 044080
Match_columns 419
No_of_seqs 164 out of 466
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:35:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mt0_A Uncharacterized protein 99.4 2.8E-11 9.4E-16 116.6 22.0 262 48-392 8-277 (290)
2 3loq_A Universal stress protei 99.3 4.3E-11 1.5E-15 115.3 18.8 268 48-392 23-291 (294)
3 3olq_A Universal stress protei 99.3 2.2E-10 7.7E-15 111.2 22.5 289 48-393 8-307 (319)
4 3cis_A Uncharacterized protein 99.2 2.2E-09 7.6E-14 104.1 23.2 276 47-391 19-306 (309)
5 3ab8_A Putative uncharacterize 99.2 9.2E-10 3.1E-14 104.3 19.5 185 49-261 2-192 (268)
6 3s3t_A Nucleotide-binding prot 98.2 7.9E-06 2.7E-10 69.5 11.2 135 48-203 6-144 (146)
7 3idf_A USP-like protein; unive 98.2 2.3E-05 7.8E-10 66.0 12.2 131 49-203 3-136 (138)
8 3fdx_A Putative filament prote 98.1 8.1E-06 2.8E-10 69.2 8.5 134 49-203 3-141 (143)
9 3fg9_A Protein of universal st 98.1 8.4E-06 2.9E-10 70.5 8.5 135 48-203 16-154 (156)
10 1mjh_A Protein (ATP-binding do 98.1 0.0001 3.6E-09 63.7 14.9 139 48-204 6-157 (162)
11 3dlo_A Universal stress protei 98.0 4.5E-05 1.5E-09 66.4 11.5 128 48-203 25-153 (155)
12 3hgm_A Universal stress protei 98.0 2.1E-05 7.1E-10 66.8 8.8 138 49-203 4-146 (147)
13 3s3t_A Nucleotide-binding prot 98.0 4.5E-05 1.6E-09 64.7 10.5 137 223-390 5-146 (146)
14 2dum_A Hypothetical protein PH 97.9 9.7E-05 3.3E-09 64.6 12.6 143 48-204 6-154 (170)
15 2z08_A Universal stress protei 97.9 3E-05 1E-09 65.4 8.8 132 49-204 4-136 (137)
16 1tq8_A Hypothetical protein RV 97.9 7.5E-05 2.6E-09 65.6 10.9 136 48-204 18-156 (163)
17 1jmv_A USPA, universal stress 97.9 0.0001 3.4E-09 62.2 11.1 129 49-204 4-136 (141)
18 3dlo_A Universal stress protei 97.8 8.8E-05 3E-09 64.6 10.4 127 223-390 24-155 (155)
19 3hgm_A Universal stress protei 97.8 3.4E-05 1.2E-09 65.4 7.4 139 224-389 3-147 (147)
20 3idf_A USP-like protein; unive 97.8 0.00021 7.3E-09 59.9 12.2 132 224-389 2-137 (138)
21 2gm3_A Unknown protein; AT3G01 97.8 0.00026 9E-09 62.2 12.8 140 48-204 6-161 (175)
22 3tnj_A Universal stress protei 97.8 7.1E-05 2.4E-09 63.9 8.5 137 48-204 7-145 (150)
23 3fg9_A Protein of universal st 97.7 0.00018 6.3E-09 61.9 10.8 135 223-390 15-156 (156)
24 2dum_A Hypothetical protein PH 97.7 0.00043 1.5E-08 60.3 12.8 146 223-392 5-157 (170)
25 3fdx_A Putative filament prote 97.7 0.00023 7.8E-09 60.0 10.6 136 224-389 2-142 (143)
26 3tnj_A Universal stress protei 97.7 0.00023 7.8E-09 60.7 10.3 141 223-391 6-147 (150)
27 2z08_A Universal stress protei 97.7 0.00026 8.9E-09 59.5 10.0 134 224-390 3-137 (137)
28 1mjh_A Protein (ATP-binding do 97.6 0.00055 1.9E-08 59.1 11.7 148 223-391 5-159 (162)
29 1jmv_A USPA, universal stress 97.6 0.00025 8.4E-09 59.8 8.8 136 224-391 3-138 (141)
30 1tq8_A Hypothetical protein RV 97.6 0.00023 7.8E-09 62.4 8.8 136 223-392 17-159 (163)
31 1q77_A Hypothetical protein AQ 97.3 0.0026 8.9E-08 53.2 12.1 125 48-203 5-136 (138)
32 3mt0_A Uncharacterized protein 97.3 0.0016 5.5E-08 61.9 11.3 138 223-413 7-146 (290)
33 3loq_A Universal stress protei 97.2 0.00058 2E-08 65.1 7.7 156 223-412 22-181 (294)
34 3olq_A Universal stress protei 97.2 0.0035 1.2E-07 60.0 12.6 155 223-412 7-167 (319)
35 3cis_A Uncharacterized protein 97.1 0.002 6.7E-08 61.9 10.6 158 222-412 18-182 (309)
36 3ab8_A Putative uncharacterize 97.1 0.0021 7E-08 60.2 10.0 158 225-412 2-165 (268)
37 2gm3_A Unknown protein; AT3G01 96.7 0.019 6.5E-07 50.0 12.4 145 223-393 5-165 (175)
38 1q77_A Hypothetical protein AQ 96.7 0.012 4.1E-07 49.0 10.4 38 223-260 4-41 (138)
39 3g40_A Na-K-CL cotransporter; 91.1 3.6 0.00012 39.6 13.5 216 49-349 22-254 (294)
40 1iv0_A Hypothetical protein; r 63.2 17 0.00058 28.9 6.3 57 146-208 38-94 (98)
41 2k4m_A TR8_protein, UPF0146 pr 42.0 22 0.00076 30.8 3.9 38 134-171 89-126 (153)
42 1ni5_A Putative cell cycle pro 40.6 25 0.00087 35.3 4.8 37 224-260 14-51 (433)
43 1wy5_A TILS, hypothetical UPF0 38.9 22 0.00075 34.0 3.8 38 223-260 24-62 (317)
44 2wsi_A FAD synthetase; transfe 38.3 1.4E+02 0.0047 28.3 9.4 23 224-246 54-76 (306)
45 4b4t_W RPN10, 26S proteasome r 37.2 37 0.0013 32.0 5.0 34 225-259 108-144 (268)
46 3a2k_A TRNA(Ile)-lysidine synt 34.5 26 0.00088 35.5 3.7 38 223-260 18-55 (464)
47 2oq2_A Phosphoadenosine phosph 32.5 27 0.00094 32.4 3.3 34 225-259 43-76 (261)
48 1nu0_A Hypothetical protein YQ 32.2 51 0.0017 27.8 4.6 71 134-209 26-98 (138)
49 1zun_A Sulfate adenylyltransfe 31.6 21 0.0007 34.6 2.3 35 225-259 48-82 (325)
50 1efp_B ETF, protein (electron 27.5 1.6E+02 0.0055 27.1 7.7 26 233-259 36-63 (252)
51 1efv_B Electron transfer flavo 27.4 1.5E+02 0.0051 27.4 7.4 26 233-259 39-66 (255)
52 1sur_A PAPS reductase; assimil 26.4 42 0.0014 29.8 3.3 32 225-260 46-77 (215)
53 1o97_C Electron transferring f 24.9 94 0.0032 29.0 5.5 31 229-259 32-64 (264)
54 1vhx_A Putative holliday junct 23.0 88 0.003 26.6 4.5 60 144-208 40-99 (150)
55 1jx7_A Hypothetical protein YC 21.3 1E+02 0.0035 24.0 4.4 33 225-257 3-40 (117)
56 3k32_A Uncharacterized protein 21.0 89 0.003 27.5 4.3 34 224-261 7-40 (203)
No 1
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.40 E-value=2.8e-11 Score=116.62 Aligned_cols=262 Identities=14% Similarity=0.078 Sum_probs=162.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhhHHHHhhhCCCCccccccCCcchHHHHHHHHHh
Q 044080 48 FRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAY 127 (419)
Q Consensus 48 lRILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~~f 127 (419)
-|||+|+...+.....+..+..++.. ....++++|.++ + .+. + ...+.+...+
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~-~~a~l~ll~v~~-~---------~~~---------~----~~l~~~~~~~--- 60 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGV-TQSHLHLLVCEK-R---------RDH---------S----AALNDLAQEL--- 60 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHH-HCCEEEEEEECS-S---------SCC---------H----HHHHHHHHHH---
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHh-cCCeEEEEEeeC-c---------HHH---------H----HHHHHHHHHH---
Confidence 47999999988888888776666543 345899999987 1 000 0 1122233322
Q ss_pred hhcCceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEEEcC
Q 044080 128 SQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDR 207 (419)
Q Consensus 128 ~~~~~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIlVDR 207 (419)
. ..++.++..+.. ..+..+.|++.|++..+||||+|++.... ..+ ..+.....+|+.++||+|-| |..
T Consensus 61 ~-~~~~~~~~~~~~--~g~~~~~i~~~a~~~~~dliV~G~~~~~~--~~~------~~~gs~~~~vl~~~~~PVlv-v~~ 128 (290)
T 3mt0_A 61 R-EEGYSVSTNQAW--KDSLHQTIIAEQQAEGCGLIIKQHFPDNP--LKK------AILTPDDWKLLRFAPCPVLM-TKT 128 (290)
T ss_dssp H-HTTCCEEEEEEC--SSSHHHHHHHHHHHHTCSEEEEECCCSCT--TST------TSCCHHHHHHHHHCSSCEEE-ECC
T ss_pred h-hCCCeEEEEEEe--CCCHHHHHHHHHHhcCCCEEEEecccCCc--hhh------cccCHHHHHHHhcCCCCEEE-ecC
Confidence 2 346777765543 35688999999999999999999986543 221 13445677999999999955 442
Q ss_pred CCCCCCCCCCCCccccceEEEEecCCcC-------hHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCC
Q 044080 208 GFGSGSPTPGPTATVAQRICIIFFGGPD-------DREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSG 280 (419)
Q Consensus 208 G~~~~~~~~~~~~~~~~~I~v~F~GG~D-------DReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~ 280 (419)
+.. . ...+|++++=|.+. .+.||++|.+|++..+..|+++++......... ..
T Consensus 129 ~~~-~---------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---------~~- 188 (290)
T 3mt0_A 129 ARP-W---------TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSA---------DP- 188 (290)
T ss_dssp CSC-S---------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-------------------
T ss_pred CCC-C---------CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccccc---------Cc-
Confidence 221 0 24689999999888 799999999999999999999999864321100 00
Q ss_pred CcccccccccccccchhhhhhHHHHHHHHHhc-CCCceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccc
Q 044080 281 FNRKWSRLRFGFHLKCLREELDETILAEFRSK-WNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLA 359 (419)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~D~~~i~ef~~~-~~~~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~ 359 (419)
.... .+..++.-.+.++++... +-..+.+ .....++.+.+...-+-.++||+|+|.++. + ++.
T Consensus 189 --------~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~-~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~-~----~~~ 252 (290)
T 3mt0_A 189 --------TFQL--SETIEARYREACRTFQAEYGFSDEQL-HIEEGPADVLIPRTAQKLDAVVTVIGTVAR-T----GLS 252 (290)
T ss_dssp --------CHHH--HHHHHHHHHHHHHHHHHHHTCCTTTE-EEEESCHHHHHHHHHHHHTCSEEEEECCSS-C----CGG
T ss_pred --------hhHH--HHHHHHHHHHHHHHHHHHcCCCcceE-EEeccCHHHHHHHHHHhcCCCEEEECCCCC-c----CCc
Confidence 0000 001112223445555544 2111222 222345555443332224589999998862 1 222
Q ss_pred cccCCCCccccchhhhhcCCCCceecEEEEeee
Q 044080 360 DRQAEHAELGPIGDILASSGQGVVSSVLVVQQH 392 (419)
Q Consensus 360 ~~w~e~~eLG~iGd~Las~d~~~~aSvLVvQq~ 392 (419)
+ -=+|-+.+.++.. +..+||||..+
T Consensus 253 ~-----~~~Gsv~~~vl~~---~~~pVLvv~~~ 277 (290)
T 3mt0_A 253 G-----ALIGNTAEVVLDT---LESDVLVLKPD 277 (290)
T ss_dssp G-----CCSCHHHHHHHTT---CSSEEEEECCH
T ss_pred c-----eecchHHHHHHhc---CCCCEEEECCC
Confidence 2 2388888888865 67899999754
No 2
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.34 E-value=4.3e-11 Score=115.33 Aligned_cols=268 Identities=11% Similarity=0.094 Sum_probs=162.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhhHHHHhhhCCCCccccccCCcchHHHHHHHHHh
Q 044080 48 FRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAY 127 (419)
Q Consensus 48 lRILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~~f 127 (419)
-|||+|+...+.....+..+..++.. ....++++|+++...-..... . .....+.+.. .......+..+...
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~-~~a~l~ll~v~~~~~~~~~~~---~--~~~~~~~~~~--~~~~~~~l~~~~~~ 94 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKV-GVEEIGVLFVINLTKLSTVSG---G--IDIDHYIDEM--SEKAEEVLPEVAQK 94 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHT-TCCEEEEECCEECTTC--------C--CCTTHHHHHH--HHHHHHHHHHHHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhh-cCCEEEEEEEecCcccccccc---c--ccHHHHHHHH--HHHHHHHHHHHHHH
Confidence 48999999999888888776666544 467899999998754321100 0 0000000000 02233444444443
Q ss_pred hhcCceEEEE-EEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEEEc
Q 044080 128 SQLGRVSVRP-TTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVD 206 (419)
Q Consensus 128 ~~~~~V~V~~-~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIlVD 206 (419)
....++.++. .+. ...+..+.| .|.+..+|||++|++.... +. ...+..+..+|++++||+|-| |.
T Consensus 95 ~~~~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~------~~--~~~~Gs~~~~vl~~~~~PVlv-v~ 161 (294)
T 3loq_A 95 IEAAGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASK------FK--KILLGSVSEGVLHDSKVPVYI-FK 161 (294)
T ss_dssp HHHTTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCH------HH--HHHHCCHHHHHHHHCSSCEEE-EC
T ss_pred HHHcCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCcc------cc--ceeeccHHHHHHhcCCCCEEE-ec
Confidence 3335677766 332 124667888 9999999999999875432 11 112345577999999999954 55
Q ss_pred CCCCCCCCCCCCCccccceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCccccc
Q 044080 207 RGFGSGSPTPGPTATVAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWS 286 (419)
Q Consensus 207 RG~~~~~~~~~~~~~~~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (419)
.+... .. ...+|++++=|.+..+.||++|.+|++..+..++++++..... .
T Consensus 162 ~~~~~------~~--~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~--~------------------- 212 (294)
T 3loq_A 162 HDMVV------NS--LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD--K------------------- 212 (294)
T ss_dssp CCTTT------TC--TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC--C-------------------
T ss_pred Ccccc------Cc--cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch--H-------------------
Confidence 44310 01 3568999999999999999999999999999999999864321 0
Q ss_pred ccccccccchhhhhhHHHHHHHHHhcCCCceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCC
Q 044080 287 RLRFGFHLKCLREELDETILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHA 366 (419)
Q Consensus 287 ~~~~~~~~~~~~~~~D~~~i~ef~~~~~~~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~ 366 (419)
+..+ +++.+.++.. +-.+.+ .....+..+.+...-+-.+.||+|+|+++. + ++.+ |
T Consensus 213 -----------~~~l-~~~~~~l~~~-~~~~~~-~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~-~----~~~~-~---- 268 (294)
T 3loq_A 213 -----------TADL-RVMEEVIGAE-GIEVHV-HIESGTPHKAILAKREEINATTIFMGSRGA-G----SVMT-M---- 268 (294)
T ss_dssp -----------HHHH-HHHHHHHHHT-TCCEEE-EEECSCHHHHHHHHHHHTTCSEEEEECCCC-S----CHHH-H----
T ss_pred -----------HHHH-HHHHHHHHHc-CCcEEE-EEecCCHHHHHHHHHHhcCcCEEEEeCCCC-C----Cccc-e----
Confidence 0111 1233333332 222433 233344444333322224589999999861 1 1222 2
Q ss_pred ccccchhhhhcCCCCceecEEEEeee
Q 044080 367 ELGPIGDILASSGQGVVSSVLVVQQH 392 (419)
Q Consensus 367 eLG~iGd~Las~d~~~~aSvLVvQq~ 392 (419)
-+|-+.+.++.. ....||||.+.
T Consensus 269 ~~Gs~~~~vl~~---~~~pvLvv~~~ 291 (294)
T 3loq_A 269 ILGSTSESVIRR---SPVPVFVCKRG 291 (294)
T ss_dssp HHHCHHHHHHHH---CSSCEEEECSC
T ss_pred eeCcHHHHHHhc---CCCCEEEECCC
Confidence 367777777755 56799999764
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.32 E-value=2.2e-10 Score=111.17 Aligned_cols=289 Identities=8% Similarity=0.002 Sum_probs=165.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCC-CchhhHHHHhhhCCCCccccccCCcchHHHHHHHHH
Q 044080 48 FRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTER-SSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQA 126 (419)
Q Consensus 48 lRILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R-~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~~ 126 (419)
-|||+++...++....+..+..++.. ....+++||.++-..- ....+ ....... . .... .......+..+..
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~-~~a~l~ll~v~~~~~~~~~~~~-~~~~~~~-~--~~~~--~~~~~~~l~~~~~ 80 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQR-NGGRIKAFLPVYDLSYDMTTLL-SPDERNA-M--RKGV--INQKTAWIKQQAR 80 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHH-HCCEEEEEEEECCGGGGCTTTS-CHHHHHH-H--HHHH--HHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHH-cCCeEEEEEEecccchhhcccc-ChhhHHH-H--HHHH--HHHHHHHHHHHHH
Confidence 47999999999988888776666543 3458999999753110 00000 0000000 0 0000 0111223332222
Q ss_pred hhhcCceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEEEc
Q 044080 127 YSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVD 206 (419)
Q Consensus 127 f~~~~~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIlVD 206 (419)
.....++.++..+.. ..+..+.|++.|++..+||||+|++.... ..+ ..+.....+|+.++||.|-| |.
T Consensus 81 ~~~~~~v~~~~~~~~--~g~~~~~i~~~a~~~~~DLiV~G~~g~~~--~~~------~~~Gs~~~~vl~~~~~PVlv-v~ 149 (319)
T 3olq_A 81 YYLEAGIQIDIKVIW--HNRPYEAIIEEVITDKHDLLIKMAHQHDK--LGS------LIFTPLDWQLLRKCPAPVWM-VK 149 (319)
T ss_dssp HHHHTTCCEEEEEEE--CSCHHHHHHHHHHHHTCSEEEEEEBCC----CCS------CBCCHHHHHHHHHCSSCEEE-EE
T ss_pred HHhhcCCeEEEEEEe--cCChHHHHHHHHHhcCCCEEEEecCcCch--hhc------ccccccHHHHHhcCCCCEEE-ec
Confidence 222356777776553 35788999999999999999999986543 222 12345577999999999955 44
Q ss_pred CCCCCCCCCCCCCccccceEEEEecCCcCh-------HHHHHHHHHHhcCC--CeEEEEEEeeeCCCCccCCcccCCCCC
Q 044080 207 RGFGSGSPTPGPTATVAQRICIIFFGGPDD-------REALELGGMMAEHP--AVKLTVIKFVEKEGLESDGVMLRPSPS 277 (419)
Q Consensus 207 RG~~~~~~~~~~~~~~~~~I~v~F~GG~DD-------ReAL~la~rma~~~--~v~lTVvr~~~~~~~~~~~~~~~~~~~ 277 (419)
.+... ...+|++++=|.+++ +.||.+|.+|++.. +..|+++++.......... ..
T Consensus 150 ~~~~~----------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~------~~ 213 (319)
T 3olq_A 150 DKEWP----------EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAI------EL 213 (319)
T ss_dssp SSCCC----------TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCT------TC
T ss_pred Ccccc----------cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhc------cC
Confidence 33210 246899998888854 99999999999876 9999999998643321100 00
Q ss_pred CCCCcccccccccccccchhhhhhHHHHHHHHHhc-CCCceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhc
Q 044080 278 RSGFNRKWSRLRFGFHLKCLREELDETILAEFRSK-WNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIA 356 (419)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~i~ef~~~-~~~~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~ 356 (419)
... . ..+. .+..++.-.+.+++|... ....+.+. ....++.+.+...-+-.+.||+|+|.++..
T Consensus 214 ~~~-~------~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~----- 278 (319)
T 3olq_A 214 PDF-D------PNLY--NNALRGQHLIAMKELRQKFSIPEEKTH-VKEGLPEQVIPQVCEELNAGIVVLGILGRT----- 278 (319)
T ss_dssp TTC-C------HHHH--HHHHHHHHHHHHHHHHHHTTCCGGGEE-EEESCHHHHHHHHHHHTTEEEEEEECCSCC-----
T ss_pred Ccc-c------HHHH--HHHHHHHHHHHHHHHHHHhCCCcccEE-EecCCcHHHHHHHHHHhCCCEEEEeccCcc-----
Confidence 000 0 0000 001111223455566554 22223222 223455554333222245899999997521
Q ss_pred ccccccCCCCccccchhhhhcCCCCceecEEEEeeec
Q 044080 357 KLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQHD 393 (419)
Q Consensus 357 gl~~~w~e~~eLG~iGd~Las~d~~~~aSvLVvQq~~ 393 (419)
++.+ -=+|-+.+.++.. +..+||||....
T Consensus 279 ~~~~-----~~~Gsv~~~vl~~---~~~pVLvv~~~~ 307 (319)
T 3olq_A 279 GLSA-----AFLGNTAEQLIDH---IKCDLLAIKPDG 307 (319)
T ss_dssp STHH-----HHHHHHHHHHHTT---CCSEEEEECCTT
T ss_pred CCcc-----ccccHHHHHHHhh---CCCCEEEECCCC
Confidence 1222 2378888888865 678999997654
No 4
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.21 E-value=2.2e-09 Score=104.15 Aligned_cols=276 Identities=12% Similarity=0.129 Sum_probs=159.2
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCc-hh-hHHHHhhhCCCCccccccCCcchHHHHHHH
Q 044080 47 VFRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSS-SI-IMVQRARKNGLPFINRFRRGEWHDRVAGAF 124 (419)
Q Consensus 47 elRILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s-~~-~~~~~~~~~~~~~~~~~~~~~~~d~I~~af 124 (419)
--|||+++...+.....+..+..++.. ....++++|.++ +.... +. ....+.... . ....+..++.+
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~-~~a~l~ll~v~~-~~~~~~~~~~~~~~~~~~-----~----~~~~~~~l~~~ 87 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAEL-RKIPLTLVHAVS-PEVATWLEVPLPPGVLRW-----Q----QDHGRHLIDDA 87 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHH-HTCCEEEEEECC-CCCCCTTCCCCCHHHHHH-----H----HHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHh-cCCcEEEEEEec-CcccccccCCCCchhhHH-----H----HHHHHHHHHHH
Confidence 358999999988888777766655532 245799999987 22111 00 000000000 0 01122233322
Q ss_pred H-Hhhhc----CceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCc
Q 044080 125 Q-AYSQL----GRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPC 199 (419)
Q Consensus 125 ~-~f~~~----~~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApC 199 (419)
. .+.+. .++.++..+. ..+..+.|++.|+ .+||||++.+.... ..+ ..+..+..+|++++||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~---~g~~~~~I~~~a~--~~DliV~G~~g~~~--~~~------~~~Gs~~~~vl~~~~~ 154 (309)
T 3cis_A 88 LKVVEQASLRAGPPTVHSEIV---PAAAVPTLVDMSK--DAVLMVVGCLGSGR--WPG------RLLGSVSSGLLRHAHC 154 (309)
T ss_dssp HHHHHHHCSSSCCSCEEEEEE---SSCHHHHHHHHGG--GEEEEEEESSCTTC--CTT------CCSCHHHHHHHHHCSS
T ss_pred HHHHHHhcccCCCceEEEEEe---cCCHHHHHHHHhc--CCCEEEECCCCCcc--ccc------cccCcHHHHHHHhCCC
Confidence 2 22221 2677766544 3578899999996 89999999986543 221 1344567899999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCC
Q 044080 200 SVGVLVDRGFGSGSPTPGPTATVAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRS 279 (419)
Q Consensus 200 sVGIlVDRG~~~~~~~~~~~~~~~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~ 279 (419)
+|-| |..+.... . .. ...+|++++=|++..+.||++|.++++..+..|+++++......... ..
T Consensus 155 PVlv-v~~~~~~~-~---~~--~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---------~~ 218 (309)
T 3cis_A 155 PVVI-IHDEDSVM-P---HP--QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEW---------PG 218 (309)
T ss_dssp CEEE-ECTTCCCS-C---SS--CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTC---------SS
T ss_pred CEEE-EcCCcccC-C---CC--CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCC---------Cc
Confidence 9955 44332110 0 01 24589999999999999999999999999999999999753221100 00
Q ss_pred CCcccccccccccccchhhhhhHHHHHH----HHHhc-CCCceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchh
Q 044080 280 GFNRKWSRLRFGFHLKCLREELDETILA----EFRSK-WNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKM 354 (419)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~D~~~i~----ef~~~-~~~~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~ 354 (419)
. . . ....+..++.+. .+... .+-.+.+. ....++.+.+...- .+.||+|+|+++. +
T Consensus 219 ~--------~--~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~~~I~~~a--~~adliV~G~~~~-~-- 279 (309)
T 3cis_A 219 I--------D--W---PATQSMAEQVLAERLAGWQERYPNVAITRV-VVRDQPARQLVQRS--EEAQLVVVGSRGR-G-- 279 (309)
T ss_dssp C--------C--H---HHHHHHHHHHHHHHHTTHHHHCTTSCEEEE-EESSCHHHHHHHHH--TTCSEEEEESSCS-S--
T ss_pred c--------c--H---HHHHHHHHHHHHHHHHHHHhhCCCCcEEEE-EEcCCHHHHHHHhh--CCCCEEEECCCCC-C--
Confidence 0 0 0 001111122333 33322 12234432 23344444332222 2699999999862 1
Q ss_pred hcccccccCCCCccccchhhhhcCCCCceecEEEEee
Q 044080 355 IAKLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQ 391 (419)
Q Consensus 355 ~~gl~~~w~e~~eLG~iGd~Las~d~~~~aSvLVvQq 391 (419)
+ | ..-=+|-+.+.++.. ....||||..
T Consensus 280 --~----~-~~~l~Gsv~~~vl~~---~~~pVlvv~~ 306 (309)
T 3cis_A 280 --G----Y-AGMLVGSVGETVAQL---ARTPVIVARE 306 (309)
T ss_dssp --C----C-TTCSSCHHHHHHHHH---CSSCEEEECC
T ss_pred --C----c-cccccCcHHHHHHhc---CCCCEEEeCC
Confidence 1 2 223478888888755 5679999964
No 5
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.20 E-value=9.2e-10 Score=104.29 Aligned_cols=185 Identities=15% Similarity=0.098 Sum_probs=118.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhhHHHHhhhCCCCc-----cccccCCcchHHHHHH
Q 044080 49 RILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPF-----INRFRRGEWHDRVAGA 123 (419)
Q Consensus 49 RILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~~~~~~~~~~~~~-----~~~~~~~~~~d~I~~a 123 (419)
|||+|+...+.....+..+..++.. ....++++|.++....................- .... ....+..++.
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 78 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYK-LSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERAL--ALRGEAVLER 78 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHH-HTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHH-hCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 6999999998888888776665543 345899999987532100000000000000000 0000 0122344444
Q ss_pred HHHhhhcCceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCC-CCCCCCCccccCccchhhHHHhhhcCCccEE
Q 044080 124 FQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQW-RGADDESMENLGHGWRGVNQRVLKNAPCSVG 202 (419)
Q Consensus 124 f~~f~~~~~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~-~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVG 202 (419)
+....+..++.++..+.. .+..+.|++. +.++|||++|.|... . ..+ ..+..+..+|++++||+|-
T Consensus 79 ~~~~~~~~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~--~~~------~~~Gs~~~~v~~~a~~PVl 145 (268)
T 3ab8_A 79 VRQSALAAGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHG--DGF------GGLGSTADRVLRASPVPVL 145 (268)
T ss_dssp HHHHHHHTTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSC--TTC------CSCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHhCCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCcc--ccc------cccchhHHHHHHhCCCCEE
Confidence 444333356777766543 4678999998 889999999998654 3 111 1244567899999999994
Q ss_pred EEEcCCCCCCCCCCCCCccccceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 044080 203 VLVDRGFGSGSPTPGPTATVAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVE 261 (419)
Q Consensus 203 IlVDRG~~~~~~~~~~~~~~~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~ 261 (419)
| |..+.. ...+|++++=|++..+.||.+|.+|+...+..++++++..
T Consensus 146 v-v~~~~~-----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~ 192 (268)
T 3ab8_A 146 L-APGEPV-----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHE 192 (268)
T ss_dssp E-ECSSCC-----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECS
T ss_pred E-ECCCCC-----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcC
Confidence 4 554322 2358999999999999999999999998889999999863
No 6
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.24 E-value=7.9e-06 Score=69.50 Aligned_cols=135 Identities=11% Similarity=0.124 Sum_probs=87.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhh--HHHHhhhCCCCccccccCCcchHHHHHHHH
Q 044080 48 FRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSII--MVQRARKNGLPFINRFRRGEWHDRVAGAFQ 125 (419)
Q Consensus 48 lRILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~--~~~~~~~~~~~~~~~~~~~~~~d~I~~af~ 125 (419)
-|||+++...++....+..+..++.. ....++++|.++......... ...+.... . .......++.+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~l~~~~ 75 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQR-HQANLTALYVVDDSAYHTPALDPVLSELLDA-------E--AAHAKDAMRQRQ 75 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH-HTCEEEEEEEEECCCCCCGGGHHHHHHHHHH-------H--HHHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHh-cCCEEEEEEEecCccccccccccccHHHHHH-------H--HHHHHHHHHHHH
Confidence 47999999888877777766655532 345899999999865443221 01111000 0 023344455444
Q ss_pred HhhhcCce-EEEEEEEEccCCChHHHHHH-HHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEE
Q 044080 126 AYSQLGRV-SVRPTTAISALSTMDQDICH-VAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGV 203 (419)
Q Consensus 126 ~f~~~~~V-~V~~~t~Vsp~~sm~~dIc~-~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGI 203 (419)
...+..++ .++..+.. .+..+.|++ .|++.++|||++|.|.... ..+ ..+..+..+|++++||+|-|
T Consensus 76 ~~~~~~g~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~--~~~------~~~Gs~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 76 QFVATTSAPNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNS--PHR------VAVGSTTSYVVDHAPCNVIV 144 (146)
T ss_dssp HHHTTSSCCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSC--TTT------CSSCHHHHHHHHHCSSEEEE
T ss_pred HHHHhcCCcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCC--cce------EEEcchHHHHhccCCCCEEE
Confidence 44444566 66665554 367899999 9999999999999886543 221 13446678999999999955
No 7
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.15 E-value=2.3e-05 Score=66.04 Aligned_cols=131 Identities=8% Similarity=0.033 Sum_probs=85.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhc-CCCCCcEEEEEEEeeeCCCCchhhH-HHHhhhCCCCccccccCC-cchHHHHHHHH
Q 044080 49 RILACFHGPGNVSSLISLVEATR-STQKQLKLFIMHLVELTERSSSIIM-VQRARKNGLPFINRFRRG-EWHDRVAGAFQ 125 (419)
Q Consensus 49 RILvcv~~~~~v~~ll~Lle~~~-~t~~p~~V~~LhLvELt~R~s~~~~-~~~~~~~~~~~~~~~~~~-~~~d~I~~af~ 125 (419)
|||+++...++....+..+..++ .. ....++++|.++.......... ..+... .. . ......++.+.
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~l~~~~ 72 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD-ADCTLTLIHVKPEFMLYGEAVLAAYDEIE-------MK--EEEKAKLLTQKFS 72 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC-TTEEEEEEEEECCCCCCHHHHHHHHHHHH-------HH--HHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC-CCCEEEEEEEecCCCcccccccCcHHHHH-------HH--HHHHHHHHHHHHH
Confidence 79999999888888888877776 43 4678999999987654322110 111000 00 0 12234444444
Q ss_pred HhhhcCceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEE
Q 044080 126 AYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGV 203 (419)
Q Consensus 126 ~f~~~~~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGI 203 (419)
...+..++.++..+.. .+..+.|++.|+ ++|||++|.|.... ..+.+ ..+..+|++++||+|-|
T Consensus 73 ~~~~~~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~--~~~~~-------Gs~~~~vl~~~~~pVlv 136 (138)
T 3idf_A 73 TFFTEKGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSF--LNKIF-------ASHQDDFIQKAPIPVLI 136 (138)
T ss_dssp HHHHTTTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTST--TSSCC-------CCTTCHHHHHCSSCEEE
T ss_pred HHHHHCCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcch--HHHHh-------CcHHHHHHhcCCCCEEE
Confidence 4433356777665544 468899999999 99999999987654 33222 23356899999999955
No 8
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.11 E-value=8.1e-06 Score=69.17 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=80.9
Q ss_pred EEEEEecCCCC--HHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhhHHHHhhhCCCCccccccCCcchHHHHHHHHH
Q 044080 49 RILACFHGPGN--VSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQA 126 (419)
Q Consensus 49 RILvcv~~~~~--v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~~ 126 (419)
|||+|+...+. ....+..+..++.. ....++++|.++............... . +.. ....+.....++.
T Consensus 3 ~ILv~vD~s~~~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~---~---~~~--~~~~~~~~~~l~~ 73 (143)
T 3fdx_A 3 AILVPIDISDKEFTERIISHVESEARI-DDAEVHFLTVIPSLPYYASLGMAYTAE---L---PGM--DELREGSETQLKE 73 (143)
T ss_dssp EEEEECCTTCSSCCTTHHHHHHHHHHH-HTCEEEEEEEECC----------------------CH--HHHHHHHHHHHHH
T ss_pred EEEEEecCChHhhHHHHHHHHHHHHHh-cCCeEEEEEEecCCcccccccccccch---h---hhH--HHHHHHHHHHHHH
Confidence 79999998887 66666555444322 245899999998754322111000000 0 000 0234556666666
Q ss_pred hhhcC---ceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEE
Q 044080 127 YSQLG---RVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGV 203 (419)
Q Consensus 127 f~~~~---~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGI 203 (419)
+.+.. ++.++..+.. .+..+.|++.|++.++|||+|+.|+ .. ..+ ..+..+..+|++++||+|-|
T Consensus 74 ~~~~~~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~-~~--~~~------~~~Gs~~~~v~~~~~~pVlv 141 (143)
T 3fdx_A 74 IAKKFSIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHR-PD--ITT------YLLGSNAAAVVRHAECSVLV 141 (143)
T ss_dssp HHTTSCCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSC-TT--CCS------CSSCHHHHHHHHHCSSEEEE
T ss_pred HHHHcCCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCC-CC--Cee------eeeccHHHHHHHhCCCCEEE
Confidence 65543 3445555444 4788999999999999999999984 22 111 23456688999999999955
No 9
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.10 E-value=8.4e-06 Score=70.45 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=83.2
Q ss_pred eEEEEEec--CCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhhHHHHhhhCCCCccccccCCcchHHHHHHHH
Q 044080 48 FRILACFH--GPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQ 125 (419)
Q Consensus 48 lRILvcv~--~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~ 125 (419)
-|||+|+. ..+.....+..+..++.. ....++++|.++............+.... . .......++.+.
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~l~~~~ 85 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHD-YDVPLGICSVLESEDINIFDSLTPSKIQA-----K----RKHVEDVVAEYV 85 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHH-HTCCEEEEEEECCCCTTCCCSSHHHHHHH-----H----HHHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEEEeCCCccccccCCHHHHHH-----H----HHHHHHHHHHHH
Confidence 47999999 888777777766555433 34589999999875421110000110000 0 022334444444
Q ss_pred HhhhcCce-EEEEEEEEccCCChHHHHHHH-HHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEE
Q 044080 126 AYSQLGRV-SVRPTTAISALSTMDQDICHV-AENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGV 203 (419)
Q Consensus 126 ~f~~~~~V-~V~~~t~Vsp~~sm~~dIc~~-A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGI 203 (419)
...+..++ .++..+.. ..+..+.|++. |++.++|||++|.|.... .. ..+..+..+|++++||+|-|
T Consensus 86 ~~~~~~g~~~~~~~v~~--~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~--~~-------~~~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 86 QLAEQRGVNQVEPLVYE--GGDVDDVILEQVIPEFKPDLLVTGADTEFP--HS-------KIAGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HHHHHHTCSSEEEEEEE--CSCHHHHHHHTHHHHHCCSEEEEETTCCCT--TS-------SSCSCHHHHHHHHCSSEEEE
T ss_pred HHHHHcCCCceEEEEEe--CCCHHHHHHHHHHHhcCCCEEEECCCCCCc--cc-------eeecchHHHHHHhCCCCEEE
Confidence 33333455 36655544 24778999999 999999999999986644 21 13455678999999999955
No 10
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.06 E-value=0.0001 Score=63.74 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=84.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeC-----CCCchh--h--H-HHH---hhhCCCCccccccCC
Q 044080 48 FRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELT-----ERSSSI--I--M-VQR---ARKNGLPFINRFRRG 114 (419)
Q Consensus 48 lRILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt-----~R~s~~--~--~-~~~---~~~~~~~~~~~~~~~ 114 (419)
-|||+|+...+.....+..+..++.. ....++++|.++.. ...... . . +.. .+. . .+.. .
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~--~ 78 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTL-KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENE--L--KNKL--T 78 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCS-SCCEEEEEEEEEGGGTC-----------------CHHHHHH--H--HHHH--H
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh-cCCeEEEEEEecCccccccccccccccccccccchhhhHHH--H--HHHH--H
Confidence 47999999888877788877777654 46689999998853 100000 0 0 000 000 0 0000 0
Q ss_pred cchHHHHHHHHHhhhcCceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhh
Q 044080 115 EWHDRVAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVL 194 (419)
Q Consensus 115 ~~~d~I~~af~~f~~~~~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL 194 (419)
......++.+....+..++.++..+.. .+..+.|++.|++.++|||++|.|.... ..+ ..+..+..+|+
T Consensus 79 ~~~~~~l~~~~~~~~~~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~--~~~------~~~GSv~~~vl 147 (162)
T 1mjh_A 79 EEAKNKMENIKKELEDVGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTN--LKE------ILLGSVTENVI 147 (162)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSC--CTT------CSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCC--ccc------eEecchHHHHH
Confidence 122333333333222356777765443 4788999999999999999999986543 221 13456688999
Q ss_pred hcCCccEEEE
Q 044080 195 KNAPCSVGVL 204 (419)
Q Consensus 195 ~~ApCsVGIl 204 (419)
+++||+|-|+
T Consensus 148 ~~~~~pVlvv 157 (162)
T 1mjh_A 148 KKSNKPVLVV 157 (162)
T ss_dssp HHCCSCEEEE
T ss_pred HhCCCCEEEE
Confidence 9999999654
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.01 E-value=4.5e-05 Score=66.42 Aligned_cols=128 Identities=9% Similarity=0.077 Sum_probs=83.6
Q ss_pred eEEEEEecC-CCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhhHHHHhhhCCCCccccccCCcchHHHHHHHHH
Q 044080 48 FRILACFHG-PGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQA 126 (419)
Q Consensus 48 lRILvcv~~-~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~~ 126 (419)
-|||+|+.. .+.....+..+..++.. ....++++|.++....... +.. ......+..+..
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~-~~a~l~llhV~~~~~~~~~-----~~~-------------~~~~~~l~~~~~ 85 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARL-RGVPVYVVHSLPGGGRTKD-----EDI-------------IEAKETLSWAVS 85 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHH-HTCCEEEEEEECCSTTSCH-----HHH-------------HHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHh-cCCEEEEEEEEcCCCcccH-----HHH-------------HHHHHHHHHHHH
Confidence 479999998 77777777766555533 2457999999986532111 100 122334444433
Q ss_pred hhhcCceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEE
Q 044080 127 YSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGV 203 (419)
Q Consensus 127 f~~~~~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGI 203 (419)
..+..++.+...+.+. ..+..+.|++.|++.++|||+++.+.... ..+ ..+..+..+|++++||+|-|
T Consensus 86 ~~~~~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~--~~~------~~lGSv~~~vl~~a~~PVLv 153 (155)
T 3dlo_A 86 IIRKEGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSP--TGK------LIFGSVARDVILKANKPVIC 153 (155)
T ss_dssp HHHHTTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECT--TSC------EECCHHHHHHHHHCSSCEEE
T ss_pred HHHhcCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCC--CCC------EEeccHHHHHHHhCCCCEEE
Confidence 3333456666554443 35788999999999999999999886543 221 13456688999999999955
No 12
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=97.99 E-value=2.1e-05 Score=66.80 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=83.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhh--HHHHhhhCCCCccccccCCcchHHHHHHHHH
Q 044080 49 RILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSII--MVQRARKNGLPFINRFRRGEWHDRVAGAFQA 126 (419)
Q Consensus 49 RILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~--~~~~~~~~~~~~~~~~~~~~~~d~I~~af~~ 126 (419)
|||+++...++....+..+..++.. ....++++|.++......... ..... .... .+.. ....+..++.+..
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~-~~~~--~~~~--~~~~~~~l~~~~~ 77 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQL-TGAELYILCVFKHHSLLEASLSMARPEQ-LDIP--DDAL--KDYATEIAVQAKT 77 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHH-HCCEEEEEEEECCHHHHHHTBSSCCCGG-GCCC--TTHH--HHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHh-cCCEEEEEEEecCcccccccccccChhh-hhhH--HHHH--HHHHHHHHHHHHH
Confidence 7999998888777777765555432 345899999988542100000 00000 0000 0000 0223445554544
Q ss_pred hhhcCceEE---EEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEE
Q 044080 127 YSQLGRVSV---RPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGV 203 (419)
Q Consensus 127 f~~~~~V~V---~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGI 203 (419)
..+..++.+ +..+.. .+..+.|++.|++.++|||++|.|.+.. ..+ ..+..+..+|++++||+|-|
T Consensus 78 ~~~~~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~--~~~------~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 78 RATELGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNG--DKS------LLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHHHTTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTC--CSC------CCCCHHHHHHHHHCSSCEEE
T ss_pred HHHhcCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCcc--ccc------eeeccHHHHHHhhCCCCEEE
Confidence 444356655 544433 4788999999999999999999986543 221 13455678999999999954
No 13
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=97.96 E-value=4.5e-05 Score=64.69 Aligned_cols=137 Identities=10% Similarity=0.064 Sum_probs=82.0
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhhhH
Q 044080 223 AQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELD 302 (419)
Q Consensus 223 ~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 302 (419)
..+|++++=|.+..+.||.+|.+||+..+..|+++++......... .. . .......+..++.-
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~---------~~--~------~~~~~~~~~~~~~~ 67 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTP---------AL--D------PVLSELLDAEAAHA 67 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCG---------GG--H------HHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc---------cc--c------cccHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999865432110 00 0 00000001112233
Q ss_pred HHHHHHHHhc-CCC---ceEEEEEEcCChHHHHHH-hhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhhc
Q 044080 303 ETILAEFRSK-WNG---VADYTEKVTSSIVEGVLT-LGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILAS 377 (419)
Q Consensus 303 ~~~i~ef~~~-~~~---~V~y~e~~v~~~~e~~~~-i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~Las 377 (419)
++.++++... ... .+.+.- ...++.+.+.. .-+-.++||+|+|+++. + + |. .--+|-+.+.++.
T Consensus 68 ~~~l~~~~~~~~~~g~~~~~~~~-~~g~~~~~I~~~~a~~~~~dliV~G~~~~-~----~----~~-~~~~Gs~~~~vl~ 136 (146)
T 3s3t_A 68 KDAMRQRQQFVATTSAPNLKTEI-SYGIPKHTIEDYAKQHPEIDLIVLGATGT-N----S----PH-RVAVGSTTSYVVD 136 (146)
T ss_dssp HHHHHHHHHHHTTSSCCCCEEEE-EEECHHHHHHHHHHHSTTCCEEEEESCCS-S----C----TT-TCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcceEEEE-ecCChHHHHHHHHHhhcCCCEEEECCCCC-C----C----cc-eEEEcchHHHHhc
Confidence 3556666654 222 334332 23355543332 22224599999998862 1 1 22 2347888888876
Q ss_pred CCCCceecEEEEe
Q 044080 378 SGQGVVSSVLVVQ 390 (419)
Q Consensus 378 ~d~~~~aSvLVvQ 390 (419)
. +...||||.
T Consensus 137 ~---~~~pVlvV~ 146 (146)
T 3s3t_A 137 H---APCNVIVIR 146 (146)
T ss_dssp H---CSSEEEEEC
T ss_pred c---CCCCEEEeC
Confidence 5 567899874
No 14
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=97.95 E-value=9.7e-05 Score=64.60 Aligned_cols=143 Identities=13% Similarity=0.071 Sum_probs=82.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchh-hHH--H-HhhhCCCCccccccCCcchHHHHHH
Q 044080 48 FRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSI-IMV--Q-RARKNGLPFINRFRRGEWHDRVAGA 123 (419)
Q Consensus 48 lRILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~-~~~--~-~~~~~~~~~~~~~~~~~~~d~I~~a 123 (419)
-|||+++...+.....+..+..++.. ....++++|.++........ -.. . ........+.+.. .......++.
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 82 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKM-EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKL--KEEASRKLQE 82 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCS-CCSEEEEEEEEETTGGGCCC------------CCTTSHHHH--HHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHh-cCCEEEEEEEecCccccccccccccccccccccHHHHHHHH--HHHHHHHHHH
Confidence 37999999888887888877777654 45789999998743211000 000 0 0000000000000 0112233333
Q ss_pred HHHhhhcCceEEEE--EEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccE
Q 044080 124 FQAYSQLGRVSVRP--TTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSV 201 (419)
Q Consensus 124 f~~f~~~~~V~V~~--~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsV 201 (419)
|....+..++.++. .+.. .+..+.|++.|++.++|||++|.|.... ..+ ..+..+..+|++++||+|
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~--~~~------~~~Gsv~~~vl~~~~~PV 151 (170)
T 2dum_A 83 KAEEVKRAFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLS--LSH------EFLGSTVMRVLRKTKKPV 151 (170)
T ss_dssp HHHHHHHHTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC----T------TCCCHHHHHHHHHCSSCE
T ss_pred HHHHHHHcCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCc--ccc------ceechHHHHHHHhCCCCE
Confidence 33322223555554 3332 4788999999999999999999986543 111 234566889999999999
Q ss_pred EEE
Q 044080 202 GVL 204 (419)
Q Consensus 202 GIl 204 (419)
-|+
T Consensus 152 lvv 154 (170)
T 2dum_A 152 LII 154 (170)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=97.94 E-value=3e-05 Score=65.37 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=78.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhhHHHHhhhCCCCccccccCCcchHHHHHHHHHhh
Q 044080 49 RILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAYS 128 (419)
Q Consensus 49 RILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~~f~ 128 (419)
|||+|+...+.....+..+..++.. ....++++|.++-... . + ........ .+ ...+..-..++.+.
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~--~-~--~~~~~~~~---~~----~~~~~~~~~l~~~~ 70 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAEA-HGARLIVVHAYEPVPD--Y-L--GEPFFEEA---LR----RRLERAEGVLEEAR 70 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHH-HTCEEEEEEEECC----------------------C----HHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhh-cCCEEEEEEEecCCCc--c-c--cccchHHH---HH----HHHHHHHHHHHHHH
Confidence 7999999888777777766555432 2458999999873211 1 1 00000000 00 11223333344443
Q ss_pred hcCce-EEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEE
Q 044080 129 QLGRV-SVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVL 204 (419)
Q Consensus 129 ~~~~V-~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIl 204 (419)
+..++ .++..+. ..+..+.|++.|++.++|||++|.|.... ..+ ..+..+..+|++++||+|-|+
T Consensus 71 ~~~g~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~--~~~------~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 71 ALTGVPKEDALLL---EGVPAEAILQAARAEKADLIVMGTRGLGA--LGS------LFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHCCCGGGEEEE---ESSHHHHHHHHHHHTTCSEEEEESSCTTC--CSC------SSSCHHHHHHHHHCSSCEEEE
T ss_pred HHcCCCccEEEEE---ecCHHHHHHHHHHHcCCCEEEECCCCCch--hhh------hhhccHHHHHHhcCCCCEEEe
Confidence 32344 4443333 24788999999999999999999986543 211 134566889999999999653
No 16
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.90 E-value=7.5e-05 Score=65.56 Aligned_cols=136 Identities=9% Similarity=0.057 Sum_probs=81.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEE--EEeeeCCCCchhhHHHHhhhCCCCccccccCCcchHHHHHHHH
Q 044080 48 FRILACFHGPGNVSSLISLVEATRSTQKQLKLFIM--HLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQ 125 (419)
Q Consensus 48 lRILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~L--hLvELt~R~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~ 125 (419)
-|||+|+...+.-...+..+..++. . ...++++ |.++........-.... .+ .+.. ....+..++.+.
T Consensus 18 ~~ILv~vD~s~~s~~al~~A~~lA~-~-~a~l~ll~a~v~~~~~~~~~~~~~~~----~~--~~~~--~~~~~~~l~~~~ 87 (163)
T 1tq8_A 18 KTVVVGTDGSDSSMRAVDRAAQIAG-A-DAKLIIASAYLPQHEDARAADILKDE----SY--KVTG--TAPIYEILHDAK 87 (163)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHT-T-TSEEEEEEECCC----------------------------CCTHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHhC-C-CCEEEEEEeeeccCcccccccccccH----HH--HHHH--HHHHHHHHHHHH
Confidence 5899999988887777877666665 3 4578888 87765432011000000 00 0000 133455555554
Q ss_pred HhhhcCceE-EEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEE
Q 044080 126 AYSQLGRVS-VRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVL 204 (419)
Q Consensus 126 ~f~~~~~V~-V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIl 204 (419)
...+..++. ++..+.. .+..+.|++.|++.++|||+|+.+.... +.. ..+..+..+|++++||+|-|+
T Consensus 88 ~~~~~~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~------~~~--~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 88 ERAHNAGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLST------IAG--RLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp HHHHTTTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCS------HHH--HHTBBHHHHHHHHTTCEEEEE
T ss_pred HHHHHcCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCc------ccc--eeeccHHHHHHHhCCCCEEEE
Confidence 443335666 6665443 4778999999999999999999885533 111 123456789999999999554
No 17
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.88 E-value=0.0001 Score=62.23 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=78.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEee-eCCCCchh--hHHHHhhhCCCCccccccCCcchHHHHHHHH
Q 044080 49 RILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVE-LTERSSSI--IMVQRARKNGLPFINRFRRGEWHDRVAGAFQ 125 (419)
Q Consensus 49 RILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvE-Lt~R~s~~--~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~ 125 (419)
|||+++...+.....+..+..++.. ....++++|.++ .+...... ....+... ...+.....++
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~ 70 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAKR-HDAKLSIIHVDVNFSDLYTGLIDVNMSSMQD------------RISTETQKALL 70 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHH-HTCEEEEEEEEECCGGGCCCCEEHHHHHHTT------------CCCCHHHHHHH
T ss_pred eEEEEecCchhhHHHHHHHHHHHHh-cCCEEEEEEEecCchhhhccccccchHHHHH------------HHHHHHHHHHH
Confidence 7999999988888777766655532 245899999984 23211110 00011100 11122233333
Q ss_pred HhhhcCceEE-EEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEE
Q 044080 126 AYSQLGRVSV-RPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVL 204 (419)
Q Consensus 126 ~f~~~~~V~V-~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIl 204 (419)
.+.+..++.+ ...+. ..+..+.|++.|++.++|||++|.| ... +.. +..+..+|++++||+|-|+
T Consensus 71 ~~~~~~~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~-~~~------~~~----lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 71 DLAESVDYPISEKLSG---SGDLGQVLSDAIEQYDVDLLVTGHH-QDF------WSK----LMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp HHHHHSSSCCCCEEEE---EECHHHHHHHHHHHTTCCEEEEEEC-CCC------HHH----HHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHcCCCceEEEEe---cCCHHHHHHHHHHhcCCCEEEEeCC-Cch------hhh----hcchHHHHHhcCCCCEEEe
Confidence 4433334443 22222 2467899999999999999999998 533 221 3467889999999999665
No 18
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=97.84 E-value=8.8e-05 Score=64.56 Aligned_cols=127 Identities=12% Similarity=0.038 Sum_probs=78.9
Q ss_pred cceEEEEecC-CcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhhh
Q 044080 223 AQRICIIFFG-GPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREEL 301 (419)
Q Consensus 223 ~~~I~v~F~G-G~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (419)
..+|++++=| .+..+.||++|.+||+..+..|+++++........ ....+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~----------------------------~~~~~~ 75 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK----------------------------DEDIIE 75 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC----------------------------HHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc----------------------------HHHHHH
Confidence 4589999999 99999999999999999899999999986332100 001112
Q ss_pred HHHHHHHHHhc---CCCceEEEEEE-cCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhhc
Q 044080 302 DETILAEFRSK---WNGVADYTEKV-TSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILAS 377 (419)
Q Consensus 302 D~~~i~ef~~~---~~~~V~y~e~~-v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~Las 377 (419)
.++.++++... ..-.+...-.+ ..++.+.+...-+-.+.||||+|+++. + + | +.--+|-+.+.++.
T Consensus 76 ~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~-~----~----~-~~~~lGSv~~~vl~ 145 (155)
T 3dlo_A 76 AKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKR-S----P----T-GKLIFGSVARDVIL 145 (155)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEE-C----T----T-SCEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCC-C----C----C-CCEEeccHHHHHHH
Confidence 22344444433 22234432222 245555433322224599999998861 1 1 1 22347888888876
Q ss_pred CCCCceecEEEEe
Q 044080 378 SGQGVVSSVLVVQ 390 (419)
Q Consensus 378 ~d~~~~aSvLVvQ 390 (419)
. +...||||+
T Consensus 146 ~---a~~PVLvVr 155 (155)
T 3dlo_A 146 K---ANKPVICIK 155 (155)
T ss_dssp H---CSSCEEEEC
T ss_pred h---CCCCEEEeC
Confidence 5 577899884
No 19
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=97.83 E-value=3.4e-05 Score=65.43 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=79.0
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhhhHH
Q 044080 224 QRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELDE 303 (419)
Q Consensus 224 ~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 303 (419)
.+|++++=|.+..+.||++|.+||+..+..|+++++............ ...... .... .+..++..+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~--~~~~~~---------~~~~--~~~~~~~~~ 69 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLS--MARPEQ---------LDIP--DDALKDYAT 69 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBS--SCCCGG---------GCCC--TTHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccc--ccChhh---------hhhH--HHHHHHHHH
Confidence 579999999999999999999999999999999999864320000000 000000 0000 011122333
Q ss_pred HHHHHHHhc---CCCce---EEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhhc
Q 044080 304 TILAEFRSK---WNGVA---DYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILAS 377 (419)
Q Consensus 304 ~~i~ef~~~---~~~~V---~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~Las 377 (419)
..++++... .+-.+ .+ .....++.+.+...-+-.++||+|+|+++. + + | +.--+|-+.+.++.
T Consensus 70 ~~l~~~~~~~~~~g~~~~~~~~-~~~~g~~~~~I~~~a~~~~~dliV~G~~~~-~----~----~-~~~~~Gs~~~~vl~ 138 (147)
T 3hgm_A 70 EIAVQAKTRATELGVPADKVRA-FVKGGRPSRTIVRFARKRECDLVVIGAQGT-N----G----D-KSLLLGSVAQRVAG 138 (147)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEE-EEEESCHHHHHHHHHHHTTCSEEEECSSCT-T----C----C-SCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccceEE-EEecCCHHHHHHHHHHHhCCCEEEEeCCCC-c----c----c-cceeeccHHHHHHh
Confidence 455555543 12122 43 233455555433322224599999999862 1 1 2 22347888887776
Q ss_pred CCCCceecEEEE
Q 044080 378 SGQGVVSSVLVV 389 (419)
Q Consensus 378 ~d~~~~aSvLVv 389 (419)
. +...||||
T Consensus 139 ~---~~~pVlvV 147 (147)
T 3hgm_A 139 S---AHCPVLVV 147 (147)
T ss_dssp H---CSSCEEEC
T ss_pred h---CCCCEEEC
Confidence 5 56788875
No 20
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=97.83 E-value=0.00021 Score=59.92 Aligned_cols=132 Identities=17% Similarity=0.108 Sum_probs=77.9
Q ss_pred ceEEEEecCCcChHHHHHHHHHHh-cCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhh-hh
Q 044080 224 QRICIIFFGGPDDREALELGGMMA-EHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLRE-EL 301 (419)
Q Consensus 224 ~~I~v~F~GG~DDReAL~la~rma-~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 301 (419)
.+|++++=|.+..+.||.+|.+|+ +..+..|+++++.......... .. ...+. .+..+ +.
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~---------~~-------~~~~~--~~~~~~~~ 63 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEA---------VL-------AAYDE--IEMKEEEK 63 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHH---------HH-------HHHHH--HHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCccccc---------cc-------CcHHH--HHHHHHHH
Confidence 479999999999999999999999 9999999999998643311000 00 00000 00011 22
Q ss_pred HHHHHHHHHhc-CCCceEEE-EEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhhcCC
Q 044080 302 DETILAEFRSK-WNGVADYT-EKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASSG 379 (419)
Q Consensus 302 D~~~i~ef~~~-~~~~V~y~-e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~Las~d 379 (419)
-++.++++... ....+.++ .....++.+.+...-+ ++||+|+|+++. + . |... +|-+.+.++..
T Consensus 64 ~~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~-~-------~-~~~~--~Gs~~~~vl~~- 129 (138)
T 3idf_A 64 AKLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSEN-S-------F-LNKI--FASHQDDFIQK- 129 (138)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTT-S-------T-TSSC--CCCTTCHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCc-c-------h-HHHH--hCcHHHHHHhc-
Confidence 33455555554 11223332 2233455554333222 799999999862 1 1 3222 27777777755
Q ss_pred CCceecEEEE
Q 044080 380 QGVVSSVLVV 389 (419)
Q Consensus 380 ~~~~aSvLVv 389 (419)
+...||||
T Consensus 130 --~~~pVlvv 137 (138)
T 3idf_A 130 --APIPVLIV 137 (138)
T ss_dssp --CSSCEEEE
T ss_pred --CCCCEEEe
Confidence 56788887
No 21
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.80 E-value=0.00026 Score=62.17 Aligned_cols=140 Identities=11% Similarity=0.072 Sum_probs=78.6
Q ss_pred eEEEEEecCCC---------CHHHHHHHHHHhcCCC--CCcEEEEEEEeeeCCCCch-----hhHHHHhhhCCCCccccc
Q 044080 48 FRILACFHGPG---------NVSSLISLVEATRSTQ--KQLKLFIMHLVELTERSSS-----IIMVQRARKNGLPFINRF 111 (419)
Q Consensus 48 lRILvcv~~~~---------~v~~ll~Lle~~~~t~--~p~~V~~LhLvELt~R~s~-----~~~~~~~~~~~~~~~~~~ 111 (419)
-|||+|+...+ .....+..+..+.... ....+++||+++....... .......... .++.
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 81 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDM----RQSN 81 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHH----TTSH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHH----HHHH
Confidence 58999999887 6666777666543221 2568999999864321100 0000000000 0000
Q ss_pred cCCcchHHHHHHHHHhhhcCceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHH
Q 044080 112 RRGEWHDRVAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQ 191 (419)
Q Consensus 112 ~~~~~~d~I~~af~~f~~~~~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~ 191 (419)
.......++.|.......++.++..+.. .+..+.|++.|++.++|||+|+.|.... ..+ ..+..+..
T Consensus 82 --~~~~~~~l~~~~~~~~~~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~--~~~------~~~Gsva~ 148 (175)
T 2gm3_A 82 --KAKGLHLLEFFVNKCHEIGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGR--FQK------VFVGTVSA 148 (175)
T ss_dssp --HHHHHHHHHHHHHHHHHHTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC----------------CHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCCh--hhh------hhcCchHH
Confidence 0112334443333322246777665443 4678999999999999999999986543 111 12345678
Q ss_pred HhhhcCCccEEEE
Q 044080 192 RVLKNAPCSVGVL 204 (419)
Q Consensus 192 ~VL~~ApCsVGIl 204 (419)
+|++++||+|-|+
T Consensus 149 ~vl~~a~~pVlvv 161 (175)
T 2gm3_A 149 FCVKHAECPVMTI 161 (175)
T ss_dssp HHHHHCSSCEEEE
T ss_pred HHHhCCCCCEEEE
Confidence 9999999999664
No 22
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.77 E-value=7.1e-05 Score=63.86 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=78.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhhHHHHhhhCCCCc-cccccCCcchHHHHHHHHH
Q 044080 48 FRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPF-INRFRRGEWHDRVAGAFQA 126 (419)
Q Consensus 48 lRILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~~~~~~~~~~~~~-~~~~~~~~~~d~I~~af~~ 126 (419)
-|||+|+...++....+..+..++.. ....++++|.++........+ .. ..+. ..... ....+.....++.
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~--~~----~~~~~~~~~~-~~~~~~~~~~l~~ 78 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQ-IGARLSLIHVLDNIPMPDTPY--GT----AIPLDTETTY-DAMLDVEKQKLSQ 78 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHH-HTCEEEEEEEEC--------C--TT----CCCSSSCCCH-HHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh-cCCEEEEEEEEcCcccccccc--cc----ccCcCHHHHH-HHHHHHHHHHHHH
Confidence 47999999999988888876665543 356899999987532210000 00 0000 00000 0122344444555
Q ss_pred hhhcCceE-EEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEE
Q 044080 127 YSQLGRVS-VRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVL 204 (419)
Q Consensus 127 f~~~~~V~-V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIl 204 (419)
+.+..++. +...+. ..+..+.|++.|++.++|||++|.|.... .. ..+..+..+|++++||+|-|+
T Consensus 79 ~~~~~~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~--~~-------~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 79 IGNTLGIDPAHRWLV---WGEPREEIIRIAEQENVDLIVVGSHGRHG--LA-------LLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp HHHHHTCCGGGEEEE---ESCHHHHHHHHHHHTTCSEEEEEEC-----------------CCCHHHHHHHHCSSEEEEE
T ss_pred HHHHcCCCcceEEEe---cCCHHHHHHHHHHHcCCCEEEEecCCCCC--cC-------eEecchHHHHHHhCCCCEEEE
Confidence 54433333 222222 24778999999999999999999886543 11 133456789999999999554
No 23
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=97.75 E-value=0.00018 Score=61.85 Aligned_cols=135 Identities=19% Similarity=0.123 Sum_probs=81.1
Q ss_pred cceEEEEec--CCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhh
Q 044080 223 AQRICIIFF--GGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREE 300 (419)
Q Consensus 223 ~~~I~v~F~--GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (419)
..+|++++= |.+..+.||.+|.+||+..+..|+++++......... ... ..+. .+..++
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---------~~~--------~~~~--~~~~~~ 75 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIF---------DSL--------TPSK--IQAKRK 75 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCC---------CSS--------HHHH--HHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcccc---------ccC--------CHHH--HHHHHH
Confidence 468999999 9999999999999999999999999999865331110 000 0000 011122
Q ss_pred hHHHHHHHHHhc----CCCceEEEEEEcCChHHHHHHh-hhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhh
Q 044080 301 LDETILAEFRSK----WNGVADYTEKVTSSIVEGVLTL-GRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDIL 375 (419)
Q Consensus 301 ~D~~~i~ef~~~----~~~~V~y~e~~v~~~~e~~~~i-~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~L 375 (419)
.-++.++++... +-..+.+.-..-.++.+.+... -+-.++||||+|+++.. . + +. -||.+.+.+
T Consensus 76 ~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~--------~-~-~~-~~Gs~~~~v 144 (156)
T 3fg9_A 76 HVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEF--------P-H-SK-IAGAIGPRL 144 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCC--------T-T-SS-SCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCC--------c-c-ce-eecchHHHH
Confidence 233455555443 1112433222214555533332 22245899999998621 1 3 23 588888888
Q ss_pred hcCCCCceecEEEEe
Q 044080 376 ASSGQGVVSSVLVVQ 390 (419)
Q Consensus 376 as~d~~~~aSvLVvQ 390 (419)
+.. +...||||.
T Consensus 145 l~~---a~~PVlvV~ 156 (156)
T 3fg9_A 145 ARK---APISVIVVR 156 (156)
T ss_dssp HHH---CSSEEEEEC
T ss_pred HHh---CCCCEEEeC
Confidence 866 567899983
No 24
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=97.71 E-value=0.00043 Score=60.35 Aligned_cols=146 Identities=12% Similarity=-0.009 Sum_probs=82.5
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCC---CCCCCCcccccccccccccchhhh
Q 044080 223 AQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPS---PSRSGFNRKWSRLRFGFHLKCLRE 299 (419)
Q Consensus 223 ~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 299 (419)
..+|++++=|.++...||++|.+||+..+..|+++++............ .. ..... . ..+. .+..+
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~--~~~~~~~~~~-~------~~~~--~~~~~ 73 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDG--YSFFYDNAEI-E------LKDI--KEKLK 73 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC---------------C------CTTS--HHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccc--cccccccccc-c------HHHH--HHHHH
Confidence 4589999999999999999999999999999999999864321100000 00 00000 0 0000 00111
Q ss_pred hhHHHHHHHHHhc---CCCceEE-EEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhh
Q 044080 300 ELDETILAEFRSK---WNGVADY-TEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDIL 375 (419)
Q Consensus 300 ~~D~~~i~ef~~~---~~~~V~y-~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~L 375 (419)
+.-++.++++... .+-.+.+ ......+..+.+...-+-.++||||+|+++. + + | ..--+|-+.+.+
T Consensus 74 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~-~----~----~-~~~~~Gsv~~~v 143 (170)
T 2dum_A 74 EEASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGK-L----S----L-SHEFLGSTVMRV 143 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCC-C----C-------TTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCC-C----c----c-ccceechHHHHH
Confidence 2223445555443 1223443 1233345544333322224599999999862 1 1 2 223488888888
Q ss_pred hcCCCCceecEEEEeee
Q 044080 376 ASSGQGVVSSVLVVQQH 392 (419)
Q Consensus 376 as~d~~~~aSvLVvQq~ 392 (419)
+.. +...||||...
T Consensus 144 l~~---~~~PVlvv~~~ 157 (170)
T 2dum_A 144 LRK---TKKPVLIIKEV 157 (170)
T ss_dssp HHH---CSSCEEEECCC
T ss_pred HHh---CCCCEEEEccC
Confidence 866 57899999743
No 25
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=97.71 E-value=0.00023 Score=60.03 Aligned_cols=136 Identities=18% Similarity=0.071 Sum_probs=76.6
Q ss_pred ceEEEEecCCcC--hHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhhh
Q 044080 224 QRICIIFFGGPD--DREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREEL 301 (419)
Q Consensus 224 ~~I~v~F~GG~D--DReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (419)
.+|++++=|.+. ...||.+|.+||+..+..|+++++.......... . ... .......+...+.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~-~------~~~--------~~~~~~~~~~~~~ 66 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASL-G------MAY--------TAELPGMDELREG 66 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-------------------------------CHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccc-c------ccc--------cchhhhHHHHHHH
Confidence 479999999999 9999999999999999999999998653211100 0 000 0000000001111
Q ss_pred HHHHHHHHHhc-CCC--ceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhhcC
Q 044080 302 DETILAEFRSK-WNG--VADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASS 378 (419)
Q Consensus 302 D~~~i~ef~~~-~~~--~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~Las~ 378 (419)
-.+.+.++... ... .+.+.- ...++.+.+...-+-.++||+|+|+++ . + | +..-+|-+.+.++..
T Consensus 67 ~~~~l~~~~~~~~~~~~~v~~~~-~~g~~~~~I~~~a~~~~~dliV~G~~~-~-----~----~-~~~~~Gs~~~~v~~~ 134 (143)
T 3fdx_A 67 SETQLKEIAKKFSIPEDRMHFHV-AEGSPKDKILALAKSLPADLVIIASHR-P-----D----I-TTYLLGSNAAAVVRH 134 (143)
T ss_dssp HHHHHHHHHTTSCCCGGGEEEEE-EESCHHHHHHHHHHHTTCSEEEEESSC-T-----T----C-CSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCceEEEE-EecChHHHHHHHHHHhCCCEEEEeCCC-C-----C----C-eeeeeccHHHHHHHh
Confidence 11223333333 212 234332 334555544333322469999999984 2 1 2 223478888888765
Q ss_pred CCCceecEEEE
Q 044080 379 GQGVVSSVLVV 389 (419)
Q Consensus 379 d~~~~aSvLVv 389 (419)
+...||||
T Consensus 135 ---~~~pVlvv 142 (143)
T 3fdx_A 135 ---AECSVLVV 142 (143)
T ss_dssp ---CSSEEEEE
T ss_pred ---CCCCEEEe
Confidence 56789987
No 26
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.68 E-value=0.00023 Score=60.65 Aligned_cols=141 Identities=15% Similarity=0.109 Sum_probs=78.8
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhhhH
Q 044080 223 AQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELD 302 (419)
Q Consensus 223 ~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 302 (419)
..+|++++=|.+..+.||.+|.+||+..+..|+++++............. ... ... .+. .+...+.-
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~-~~~-~~~---------~~~--~~~~~~~~ 72 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGT-AIP-LDT---------ETT--YDAMLDVE 72 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTT-CCC-SSS---------CCC--HHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCcccccccccc-ccC-cCH---------HHH--HHHHHHHH
Confidence 46899999999999999999999999999999999998643211000000 000 000 000 01112223
Q ss_pred HHHHHHHHhc-CCCceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhhcCCCC
Q 044080 303 ETILAEFRSK-WNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASSGQG 381 (419)
Q Consensus 303 ~~~i~ef~~~-~~~~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~Las~d~~ 381 (419)
++.++++... .-..+.+ .....++.+.+...-+-.++||+|+|++.. + . |. --+|-+.+.++..
T Consensus 73 ~~~l~~~~~~~~~~~~~~-~~~~g~~~~~I~~~a~~~~~dliV~G~~~~-~-------~-~~--~~~Gs~~~~vl~~--- 137 (150)
T 3tnj_A 73 KQKLSQIGNTLGIDPAHR-WLVWGEPREEIIRIAEQENVDLIVVGSHGR-H-------G-LA--LLLGSTANSVLHY--- 137 (150)
T ss_dssp HHHHHHHHHHHTCCGGGE-EEEESCHHHHHHHHHHHTTCSEEEEEEC-------------------CCCHHHHHHHH---
T ss_pred HHHHHHHHHHcCCCcceE-EEecCCHHHHHHHHHHHcCCCEEEEecCCC-C-------C-cC--eEecchHHHHHHh---
Confidence 3455555554 2221222 233355555443332224699999998862 1 1 32 4578888888765
Q ss_pred ceecEEEEee
Q 044080 382 VVSSVLVVQQ 391 (419)
Q Consensus 382 ~~aSvLVvQq 391 (419)
+...||||..
T Consensus 138 ~~~pVlvv~~ 147 (150)
T 3tnj_A 138 AKCDVLAVRL 147 (150)
T ss_dssp CSSEEEEEEC
T ss_pred CCCCEEEEeC
Confidence 5679999974
No 27
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=97.65 E-value=0.00026 Score=59.52 Aligned_cols=134 Identities=22% Similarity=0.201 Sum_probs=78.9
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhhhHH
Q 044080 224 QRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELDE 303 (419)
Q Consensus 224 ~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 303 (419)
.+|++++=|.+..+.||++|.+||+..+..|+++++..+....... . .... . .+..++.-+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~----~-~~~~------------~--~~~~~~~~~ 63 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGE----P-FFEE------------A--LRRRLERAE 63 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC---------------------------------CHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccc----c-chHH------------H--HHHHHHHHH
Confidence 5799999999999999999999999989999999997532110000 0 0000 0 001112233
Q ss_pred HHHHHHHhcCCC-ceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhhcCCCCc
Q 044080 304 TILAEFRSKWNG-VADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASSGQGV 382 (419)
Q Consensus 304 ~~i~ef~~~~~~-~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~Las~d~~~ 382 (419)
+.++++....+- .+.+. ....++.+.+...-+-.++||||+|+++. + + | ..--+|-+.+.++.. +
T Consensus 64 ~~l~~~~~~~g~~~~~~~-~~~g~~~~~I~~~a~~~~~dliV~G~~~~-~----~----~-~~~~~Gs~~~~vl~~---~ 129 (137)
T 2z08_A 64 GVLEEARALTGVPKEDAL-LLEGVPAEAILQAARAEKADLIVMGTRGL-G----A----L-GSLFLGSQSQRVVAE---A 129 (137)
T ss_dssp HHHHHHHHHHCCCGGGEE-EEESSHHHHHHHHHHHTTCSEEEEESSCT-T----C----C-SCSSSCHHHHHHHHH---C
T ss_pred HHHHHHHHHcCCCccEEE-EEecCHHHHHHHHHHHcCCCEEEECCCCC-c----h----h-hhhhhccHHHHHHhc---C
Confidence 455555543111 34443 23345555433322224599999999862 1 1 2 223478888888766 5
Q ss_pred eecEEEEe
Q 044080 383 VSSVLVVQ 390 (419)
Q Consensus 383 ~aSvLVvQ 390 (419)
...||||.
T Consensus 130 ~~pVlvv~ 137 (137)
T 2z08_A 130 PCPVLLVR 137 (137)
T ss_dssp SSCEEEEC
T ss_pred CCCEEEeC
Confidence 67899873
No 28
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=97.60 E-value=0.00055 Score=59.10 Aligned_cols=148 Identities=12% Similarity=0.053 Sum_probs=81.6
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCC----CccCCcccCCCCCCCCCcccccccccccccchhh
Q 044080 223 AQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEG----LESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLR 298 (419)
Q Consensus 223 ~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (419)
..+|++++=|.+..+.||++|.+||+..+..|+++++..... ....... ........ . ... ..+. .+..
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~--~~~~--~~~~ 77 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLL-GVAGLNKS-V-EEF--ENEL--KNKL 77 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-------------------C-HHH--HHHH--HHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccc-cccccccc-h-hhh--HHHH--HHHH
Confidence 458999999999999999999999999999999999986431 0000000 00000000 0 000 0000 0011
Q ss_pred hhhHHHHHHHHHhc---CCCceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhh
Q 044080 299 EELDETILAEFRSK---WNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDIL 375 (419)
Q Consensus 299 ~~~D~~~i~ef~~~---~~~~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~L 375 (419)
++.-++.++++... .+-.+.+. ....++.+.+...-+-.++||||+|+++. + + | ..--||-+.+.+
T Consensus 78 ~~~~~~~l~~~~~~~~~~g~~~~~~-v~~G~~~~~I~~~a~~~~~dlIV~G~~g~-~----~----~-~~~~~GSv~~~v 146 (162)
T 1mjh_A 78 TEEAKNKMENIKKELEDVGFKVKDI-IVVGIPHEEIVKIAEDEGVDIIIMGSHGK-T----N----L-KEILLGSVTENV 146 (162)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEE-EEEECHHHHHHHHHHHTTCSEEEEESCCS-S----C----C-TTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEE-EcCCCHHHHHHHHHHHcCCCEEEEcCCCC-C----C----c-cceEecchHHHH
Confidence 12223455555543 22223332 22345554333322224599999999862 1 1 2 223488888888
Q ss_pred hcCCCCceecEEEEee
Q 044080 376 ASSGQGVVSSVLVVQQ 391 (419)
Q Consensus 376 as~d~~~~aSvLVvQq 391 (419)
+.. +...||||..
T Consensus 147 l~~---~~~pVlvv~~ 159 (162)
T 1mjh_A 147 IKK---SNKPVLVVKR 159 (162)
T ss_dssp HHH---CCSCEEEECC
T ss_pred HHh---CCCCEEEEeC
Confidence 866 5789999964
No 29
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.57 E-value=0.00025 Score=59.77 Aligned_cols=136 Identities=13% Similarity=0.007 Sum_probs=77.9
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhhhHH
Q 044080 224 QRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELDE 303 (419)
Q Consensus 224 ~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 303 (419)
.+|++++=|.+....||++|.+||+..+..|+++++.......... .... . ..+.. +...+.-.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~-------~~~~-~------~~~~~--~~~~~~~~ 66 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTG-------LIDV-N------MSSMQ--DRISTETQ 66 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCC-------CEEH-H------HHHHT--TCCCCHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhcc-------cccc-c------hHHHH--HHHHHHHH
Confidence 4799999999999999999999999889999999997431110000 0000 0 00000 00011122
Q ss_pred HHHHHHHhcCCCceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhhcCCCCce
Q 044080 304 TILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASSGQGVV 383 (419)
Q Consensus 304 ~~i~ef~~~~~~~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~Las~d~~~~ 383 (419)
+.++++....+-.+........++.+.+...-+-.++||+|+|++ ... |.. ||-+.+.++.. +.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~---------~~~---lgs~~~~vl~~---~~ 130 (141)
T 1jmv_A 67 KALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDF---------WSK---LMSSTRQVMNT---IK 130 (141)
T ss_dssp HHHHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCC---------HHH---HHHHHHHHHTT---CC
T ss_pred HHHHHHHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cch---------hhh---hcchHHHHHhc---CC
Confidence 445555544211221122233455554333322245999999988 321 222 67778888755 67
Q ss_pred ecEEEEee
Q 044080 384 SSVLVVQQ 391 (419)
Q Consensus 384 aSvLVvQq 391 (419)
..||||..
T Consensus 131 ~pVlvv~~ 138 (141)
T 1jmv_A 131 IDMLVVPL 138 (141)
T ss_dssp SEEEEEEC
T ss_pred CCEEEeeC
Confidence 89999974
No 30
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.57 E-value=0.00023 Score=62.42 Aligned_cols=136 Identities=17% Similarity=0.208 Sum_probs=76.8
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEE--EeeeCCCC-ccCCcccCCCCCCCCCcccccccccccccchhhh
Q 044080 223 AQRICIIFFGGPDDREALELGGMMAEHPAVKLTVI--KFVEKEGL-ESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLRE 299 (419)
Q Consensus 223 ~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVv--r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (419)
..+|++++=|.+..+.||++|.+||+ .+..|+++ +++..... .... . ..... . +..+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~----~-~~~~~--------~------~~~~ 76 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADI----L-KDESY--------K------VTGT 76 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC---------------------------------------C
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccc----c-ccHHH--------H------HHHH
Confidence 56899999999999999999999999 99999999 87643221 0000 0 00000 0 0011
Q ss_pred hhHHHHHHHHHhc---CCCc-eEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhh
Q 044080 300 ELDETILAEFRSK---WNGV-ADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDIL 375 (419)
Q Consensus 300 ~~D~~~i~ef~~~---~~~~-V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~L 375 (419)
+.-++.++++... .+-. +.+. ....++.+.+...-+..++||||+|+++. + ++.. --||-+.+.+
T Consensus 77 ~~~~~~l~~~~~~~~~~gv~~v~~~-v~~G~~~~~I~~~a~~~~~DLIV~G~~g~-~----~~~~-----~~lGSva~~v 145 (163)
T 1tq8_A 77 APIYEILHDAKERAHNAGAKNVEER-PIVGAPVDALVNLADEEKADLLVVGNVGL-S----TIAG-----RLLGSVPANV 145 (163)
T ss_dssp CTHHHHHHHHHHHHHTTTCCEEEEE-EECSSHHHHHHHHHHHTTCSEEEEECCCC-C----SHHH-----HHTBBHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEE-EecCCHHHHHHHHHHhcCCCEEEECCCCC-C----cccc-----eeeccHHHHH
Confidence 1122344444443 1112 4332 23344544332222224599999999862 1 1222 2378888888
Q ss_pred hcCCCCceecEEEEeee
Q 044080 376 ASSGQGVVSSVLVVQQH 392 (419)
Q Consensus 376 as~d~~~~aSvLVvQq~ 392 (419)
+.. +...||||...
T Consensus 146 l~~---a~~PVlvV~~~ 159 (163)
T 1tq8_A 146 SRR---AKVDVLIVHTT 159 (163)
T ss_dssp HHH---TTCEEEEECCC
T ss_pred HHh---CCCCEEEEeCC
Confidence 866 56799999743
No 31
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.33 E-value=0.0026 Score=53.22 Aligned_cols=125 Identities=10% Similarity=0.071 Sum_probs=75.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEe-ee-CCCCchhhHHHHhhhCCCCc----cccccCCcchHHHH
Q 044080 48 FRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLV-EL-TERSSSIIMVQRARKNGLPF----INRFRRGEWHDRVA 121 (419)
Q Consensus 48 lRILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLv-EL-t~R~s~~~~~~~~~~~~~~~----~~~~~~~~~~d~I~ 121 (419)
-|||+++...+.....+..+..++.. ....++++|.+ +. +.. +.+ ... ..+. .+.. .......+
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~--~~~--~~~---~~~~~~~~~~~~--~~~~~~~l 74 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEK-LGAELDILAVLEDVYNLE--RAN--VTF---GLPFPPEIKEES--KKRIERRL 74 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT-TCCEEEEEEECHHHHHHH--HHH--HHH---CCCCCTHHHHHH--HHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHH-cCCeEEEEEEeccccccc--ccc--ccc---CCCCChHHHHHH--HHHHHHHH
Confidence 47999999988888888877766644 45689999998 53 100 000 000 0000 0000 01122333
Q ss_pred HHHHHh-hhcCceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCcc
Q 044080 122 GAFQAY-SQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCS 200 (419)
Q Consensus 122 ~af~~f-~~~~~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCs 200 (419)
+.++.+ ....+ .++..+. ..+..+.|++.|++.++|||+||.|.. .+..+|++++||+
T Consensus 75 ~~~~~~~~~~~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~g~-----------------sv~~~vl~~a~~P 133 (138)
T 1q77_A 75 REVWEKLTGSTE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACYPS-----------------AYLCKVIDGLNLA 133 (138)
T ss_dssp HHHHHHHHSCCC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSCCG-----------------GGTHHHHHHSSSE
T ss_pred HHHHHHhhccCC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCCCC-----------------chHHHHHHhCCCc
Confidence 333222 12233 4544432 357889999999999999999997622 3466899999999
Q ss_pred EEE
Q 044080 201 VGV 203 (419)
Q Consensus 201 VGI 203 (419)
|-|
T Consensus 134 Vlv 136 (138)
T 1q77_A 134 SLI 136 (138)
T ss_dssp EEE
T ss_pred eEe
Confidence 955
No 32
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=97.26 E-value=0.0016 Score=61.89 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=88.1
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhhhH
Q 044080 223 AQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELD 302 (419)
Q Consensus 223 ~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 302 (419)
..+|++++=|.+....||.+|.+||+..+..|+++++..+ . . .++.++
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~-----~---------~------------------~~~~l~ 54 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR-----R---------D------------------HSAALN 54 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS-----S---------C------------------CHHHHH
T ss_pred hceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc-----H---------H------------------HHHHHH
Confidence 4689999999999999999999999999999999999752 1 0 011222
Q ss_pred HHHHHHHHhcCCCceEEEEEEc--CChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhhcCCC
Q 044080 303 ETILAEFRSKWNGVADYTEKVT--SSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASSGQ 380 (419)
Q Consensus 303 ~~~i~ef~~~~~~~V~y~e~~v--~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~Las~d~ 380 (419)
++.+.++.. .+.++-... .++.+.+...-+..++||+|+|+++. + +-+.--+|...+.++..
T Consensus 55 -~~~~~~~~~---~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~-~---------~~~~~~~gs~~~~vl~~-- 118 (290)
T 3mt0_A 55 -DLAQELREE---GYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPD-N---------PLKKAILTPDDWKLLRF-- 118 (290)
T ss_dssp -HHHHHHHHT---TCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCS-C---------TTSTTSCCHHHHHHHHH--
T ss_pred -HHHHHHhhC---CCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccC-C---------chhhcccCHHHHHHHhc--
Confidence 334444432 233433333 34555433322224599999999862 1 12233478888888765
Q ss_pred CceecEEEEeeecCCCCCCCCceeEeccCcccc
Q 044080 381 GVVSSVLVVQQHDMAHAEETPVAKIVQSDCEKY 413 (419)
Q Consensus 381 ~~~aSvLVvQq~~~~~~~~~~~~~~~~~~~~~~ 413 (419)
+...||||..... + .+....+..|+...
T Consensus 119 -~~~PVlvv~~~~~-~---~~~~Ilva~D~s~~ 146 (290)
T 3mt0_A 119 -APCPVLMTKTARP-W---TGGKILAAVDVGNN 146 (290)
T ss_dssp -CSSCEEEECCCSC-S---TTCEEEEEECTTCC
T ss_pred -CCCCEEEecCCCC-C---CCCeEEEEECCCCc
Confidence 6779999984432 2 34555666676543
No 33
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=97.23 E-value=0.00058 Score=65.08 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=93.8
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhhhH
Q 044080 223 AQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELD 302 (419)
Q Consensus 223 ~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 302 (419)
..+|++++=|.+..+.||.+|.+||+..+..|+++++.......... ... . ..+. .+..++.-
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~--------~~~-~------~~~~--~~~~~~~~ 84 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVS--------GGI-D------IDHY--IDEMSEKA 84 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-------------CC-C------TTHH--HHHHHHHH
T ss_pred hccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccccccc--------ccc-c------HHHH--HHHHHHHH
Confidence 46899999999999999999999999999999999998654321100 000 0 0000 01112223
Q ss_pred HHHHHHHHhc-CCCceEEEE-E-E-cCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhhcC
Q 044080 303 ETILAEFRSK-WNGVADYTE-K-V-TSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASS 378 (419)
Q Consensus 303 ~~~i~ef~~~-~~~~V~y~e-~-~-v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~Las~ 378 (419)
++.++++... ....+.++. . . ..++.+.+ .....++||||+|+++ .+ ++.. --+|-+.+.++..
T Consensus 85 ~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g-~~----~~~~-----~~~Gs~~~~vl~~ 152 (294)
T 3loq_A 85 EEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRG-AS----KFKK-----ILLGSVSEGVLHD 152 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCC-CC----HHHH-----HHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCC-Cc----cccc-----eeeccHHHHHHhc
Confidence 3556666554 223355544 2 2 34566655 3233559999999986 21 1111 2268888888765
Q ss_pred CCCceecEEEEeeecCCCCCCCCceeEeccCccc
Q 044080 379 GQGVVSSVLVVQQHDMAHAEETPVAKIVQSDCEK 412 (419)
Q Consensus 379 d~~~~aSvLVvQq~~~~~~~~~~~~~~~~~~~~~ 412 (419)
+...||||......+ ..+....+..|+..
T Consensus 153 ---~~~PVlvv~~~~~~~--~~~~~Ilv~~d~s~ 181 (294)
T 3loq_A 153 ---SKVPVYIFKHDMVVN--SLFDRVLVAYDFSK 181 (294)
T ss_dssp ---CSSCEEEECCCTTTT--CTTSEEEEECCSSH
T ss_pred ---CCCCEEEecCccccC--ccCCEEEEEECCCH
Confidence 567999998765321 33445566667654
No 34
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=97.17 E-value=0.0035 Score=60.03 Aligned_cols=155 Identities=10% Similarity=0.038 Sum_probs=90.4
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchh-hh--
Q 044080 223 AQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCL-RE-- 299 (419)
Q Consensus 223 ~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 299 (419)
..+|+++.=|.+....||.+|.+||+..+..|++++++........ ... ..... ... +.
T Consensus 7 ~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~---------~~~--------~~~~~-~~~~~~~~ 68 (319)
T 3olq_A 7 YQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMT---------TLL--------SPDER-NAMRKGVI 68 (319)
T ss_dssp SCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCT---------TTS--------CHHHH-HHHHHHHH
T ss_pred cceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhc---------ccc--------ChhhH-HHHHHHHH
Confidence 4689999999999999999999999999999999999753211100 000 00000 000 00
Q ss_pred hhHHHHHHHHHhc---CCCceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhh
Q 044080 300 ELDETILAEFRSK---WNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILA 376 (419)
Q Consensus 300 ~~D~~~i~ef~~~---~~~~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~La 376 (419)
+.-++.++++... .+-.+.+.-....++.+.+...-+-.++||||+|+++ .+ +-+..-+|-..+.++
T Consensus 69 ~~~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g-~~---------~~~~~~~Gs~~~~vl 138 (319)
T 3olq_A 69 NQKTAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQ-HD---------KLGSLIFTPLDWQLL 138 (319)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBC-C-----------CCSCBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCc-Cc---------hhhcccccccHHHHH
Confidence 1112344444443 2223444333245555543332222358999999986 11 223344788888777
Q ss_pred cCCCCceecEEEEeeecCCCCCCCCceeEeccCccc
Q 044080 377 SSGQGVVSSVLVVQQHDMAHAEETPVAKIVQSDCEK 412 (419)
Q Consensus 377 s~d~~~~aSvLVvQq~~~~~~~~~~~~~~~~~~~~~ 412 (419)
.. +...||||..... ..+....+..|+..
T Consensus 139 ~~---~~~PVlvv~~~~~----~~~~~Ilva~D~s~ 167 (319)
T 3olq_A 139 RK---CPAPVWMVKDKEW----PEYGTIVVAANLSN 167 (319)
T ss_dssp HH---CSSCEEEEESSCC----CTTCEEEEECCCSC
T ss_pred hc---CCCCEEEecCccc----ccCCeEEEEECCCC
Confidence 55 6779999986532 23455666777654
No 35
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=97.15 E-value=0.002 Score=61.89 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=88.9
Q ss_pred ccceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhhh
Q 044080 222 VAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREEL 301 (419)
Q Consensus 222 ~~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (419)
...+|++++=|.+....||.+|.+||+..+..|++++++.+....-. .... ..+. .+..++.
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~--------~~~~--------~~~~--~~~~~~~ 79 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWL--------EVPL--------PPGV--LRWQQDH 79 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTT--------CCCC--------CHHH--HHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccc--------cCCC--------Cchh--hHHHHHH
Confidence 35789999999999999999999999988999999999753211000 0000 0000 0001112
Q ss_pred HHHHHHHHHhc---C---CCceEEEEE-EcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhh
Q 044080 302 DETILAEFRSK---W---NGVADYTEK-VTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDI 374 (419)
Q Consensus 302 D~~~i~ef~~~---~---~~~V~y~e~-~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~ 374 (419)
-++.+++++.. . ...+.++.. ...+..+.+... ..++||||+|+++. + + | ...-+|-..+.
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~--a~~~DliV~G~~g~-~----~----~-~~~~~Gs~~~~ 147 (309)
T 3cis_A 80 GRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDM--SKDAVLMVVGCLGS-G----R----W-PGRLLGSVSSG 147 (309)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHH--GGGEEEEEEESSCT-T----C----C-TTCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEEecCCHHHHHHHH--hcCCCEEEECCCCC-c----c----c-cccccCcHHHH
Confidence 22344444332 1 112333332 234444433222 22699999999861 1 1 2 23348888888
Q ss_pred hhcCCCCceecEEEEeeecCCCCCCCCceeEeccCccc
Q 044080 375 LASSGQGVVSSVLVVQQHDMAHAEETPVAKIVQSDCEK 412 (419)
Q Consensus 375 Las~d~~~~aSvLVvQq~~~~~~~~~~~~~~~~~~~~~ 412 (419)
++.. +...||||...........+....+..|+..
T Consensus 148 vl~~---~~~PVlvv~~~~~~~~~~~~~~Ilv~~D~s~ 182 (309)
T 3cis_A 148 LLRH---AHCPVVIIHDEDSVMPHPQQAPVLVGVDGSS 182 (309)
T ss_dssp HHHH---CSSCEEEECTTCCCSCSSCCCCEEEECCSSH
T ss_pred HHHh---CCCCEEEEcCCcccCCCCCCCeEEEEeCCCh
Confidence 8866 6789999986543211122333456666543
No 36
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.11 E-value=0.0021 Score=60.18 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=87.9
Q ss_pred eEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCcc-CCcccCCCCCCCCCccccccccccccc--chhhhhh
Q 044080 225 RICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLES-DGVMLRPSPSRSGFNRKWSRLRFGFHL--KCLREEL 301 (419)
Q Consensus 225 ~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 301 (419)
+|++++=|.+....||.+|.+||+..+..|+++++........ .... ....... ..+... .....+.
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~ 71 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLD--FGALTVP--------VPVLRTELERALALR 71 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC---------C--------HHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccC--chHHHHH--------HHHHHHHHHHHHHHH
Confidence 6999999999999999999999998899999999975322100 0000 0000000 000000 0001122
Q ss_pred HHHHHHHHHhc---CCCceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccccccCCCCccccchhhhhcC
Q 044080 302 DETILAEFRSK---WNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASS 378 (419)
Q Consensus 302 D~~~i~ef~~~---~~~~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~eLG~iGd~Las~ 378 (419)
-++.++++... .+-.+.+.- ...++.+.+... ..++||||+|+++... + | +..-+|-+.+.++..
T Consensus 72 ~~~~l~~~~~~~~~~g~~~~~~~-~~g~~~~~I~~~--~~~~dliV~G~~g~~~----~----~-~~~~~Gs~~~~v~~~ 139 (268)
T 3ab8_A 72 GEAVLERVRQSALAAGVAVEAVL-EEGVPHEAILRR--ARAADLLVLGRSGEAH----G----D-GFGGLGSTADRVLRA 139 (268)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEE-EEECHHHHHHHH--HTTCSEEEEESSCTTS----C----T-TCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEE-ecCCHHHHHHhh--ccCCCEEEEeccCCCc----c----c-cccccchhHHHHHHh
Confidence 23455555443 222344332 234555543333 3459999999886110 1 2 223488888888866
Q ss_pred CCCceecEEEEeeecCCCCCCCCceeEeccCccc
Q 044080 379 GQGVVSSVLVVQQHDMAHAEETPVAKIVQSDCEK 412 (419)
Q Consensus 379 d~~~~aSvLVvQq~~~~~~~~~~~~~~~~~~~~~ 412 (419)
+...||||..... .+....+..|+..
T Consensus 140 ---a~~PVlvv~~~~~-----~~~~ilv~~d~s~ 165 (268)
T 3ab8_A 140 ---SPVPVLLAPGEPV-----ELEGALLGYDASE 165 (268)
T ss_dssp ---CSSCEEEECSSCC-----CCCEEEEECCSCH
T ss_pred ---CCCCEEEECCCCC-----CCCEEEEEECCCH
Confidence 6789999985432 3344556666543
No 37
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=96.73 E-value=0.019 Score=50.02 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=74.8
Q ss_pred cceEEEEecCCc---------ChHHHHHHHHHHh-cC--CCeEEEEEEeeeCCCCccCCcccCCCCCCCCCccccccccc
Q 044080 223 AQRICIIFFGGP---------DDREALELGGMMA-EH--PAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRF 290 (419)
Q Consensus 223 ~~~I~v~F~GG~---------DDReAL~la~rma-~~--~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (419)
..+|++++=|.+ ..+.||.+|.+++ +. .+..|+++++............ .... . ..
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~---~~~~-~--------~~ 72 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVD---SIYA-S--------PE 72 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-------------CCCC-S--------HH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccc---cccC-C--------HH
Confidence 468999998988 8899999999987 43 5899999998743211000000 0000 0 00
Q ss_pred ccc-cchhhhhhHHHHHHHHHhc-CCCceEEEEE-EcCChHHHH-HHhhhcCCCcEEEEccCCCCchhhcccccccCCCC
Q 044080 291 GFH-LKCLREELDETILAEFRSK-WNGVADYTEK-VTSSIVEGV-LTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHA 366 (419)
Q Consensus 291 ~~~-~~~~~~~~D~~~i~ef~~~-~~~~V~y~e~-~v~~~~e~~-~~i~~~~~~dLviVGR~~~~s~~~~gl~~~w~e~~ 366 (419)
... ..+..++.-.+.++++... ....+.++.. ...+..+.+ ...++ .++||||+|+++. + + |. .-
T Consensus 73 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~-~~~DLIVmG~~g~-~----~----~~-~~ 141 (175)
T 2gm3_A 73 DFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKR-VRPDFLVVGSRGL-G----R----FQ-KV 141 (175)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHH-HCCSEEEEEECCC-C--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHH-hCCCEEEEeCCCC-C----h----hh-hh
Confidence 000 0000111223455555443 1112333222 234444433 22332 3589999998862 1 1 21 23
Q ss_pred ccccchhhhhcCCCCceecEEEEeeec
Q 044080 367 ELGPIGDILASSGQGVVSSVLVVQQHD 393 (419)
Q Consensus 367 eLG~iGd~Las~d~~~~aSvLVvQq~~ 393 (419)
-+|-+.+.++.. +...||||....
T Consensus 142 ~~Gsva~~vl~~---a~~pVlvv~~~~ 165 (175)
T 2gm3_A 142 FVGTVSAFCVKH---AECPVMTIKRNA 165 (175)
T ss_dssp ---CHHHHHHHH---CSSCEEEEECCG
T ss_pred hcCchHHHHHhC---CCCCEEEEcCCc
Confidence 478888888866 578999998543
No 38
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=96.68 E-value=0.012 Score=49.02 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=35.8
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 044080 223 AQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFV 260 (419)
Q Consensus 223 ~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~ 260 (419)
..+|++++=|.+..+.||.+|.+|++..+..|+++++.
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~ 41 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVL 41 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 46899999999999999999999999999999999987
No 39
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=91.07 E-value=3.6 Score=39.60 Aligned_cols=216 Identities=10% Similarity=0.042 Sum_probs=126.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhhHHHHhhhCCCCccccccCCcchHHHHHHHHHhh
Q 044080 49 RILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAYS 128 (419)
Q Consensus 49 RILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~~f~ 128 (419)
.|||....|..-.+++.|+..+... .-.+.+.+++ ++-...++ ..+ +.+++.|=
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~~--~G~ltv~~i~--p~~~~~~l---------------------~~q-l~~l~~~l 75 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITYP--KGSVKLLGLA--GNTDKENL---------------------LSQ-LPSISEGF 75 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHTT--TCEEEEEECC-----CTTCH---------------------HHH-HHHHHHHH
T ss_pred cEEEecCCchhhhhHHHHHHHhccC--ceeEEEEEEc--cCCCccHH---------------------HHH-HHHHHHHH
Confidence 5999999999999999999998864 4466777663 22111111 112 25566665
Q ss_pred hcCceEEEEEEEEccCCChHHHHHHHHHhc-----CccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEE
Q 044080 129 QLGRVSVRPTTAISALSTMDQDICHVAENK-----RVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGV 203 (419)
Q Consensus 129 ~~~~V~V~~~t~Vsp~~sm~~dIc~~A~~k-----~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGI 203 (419)
+..+|.... .|....++.+-+-.+.+.. +.+.|+|+|..+.. ....|+.+.+.+ .++.-+|-|
T Consensus 76 ~~r~v~a~~--~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e---------~~~~y~~~i~~~-~~~~~nVli 143 (294)
T 3g40_A 76 QEEGVFSSW--TIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD---------RDEEIREIIRKA-SMYRMGVLL 143 (294)
T ss_dssp HHTTCEEEE--EEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG---------GHHHHHHHHHHH-HHTTCEEEE
T ss_pred HhCCceeEE--EEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh---------hhHHHHHHHHHH-HHhCceEEE
Confidence 545655444 4444457888888888774 56899999964432 223677777654 455777766
Q ss_pred EEcCCCCCCCCCCCCCccccceEEEEecCC-----------cChHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCccc
Q 044080 204 LVDRGFGSGSPTPGPTATVAQRICIIFFGG-----------PDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVML 272 (419)
Q Consensus 204 lVDRG~~~~~~~~~~~~~~~~~I~v~F~GG-----------~DDReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~ 272 (419)
|-+....++. ...+|=+= .|| .+=-.+|-+|..|..|.+.++.++.+++.+.
T Consensus 144 l~~~~~~~fg--------~~~~IdvW-~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~de~-------- 206 (294)
T 3g40_A 144 FSKHPQAGLG--------RQNLINLW-IENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPTAI-------- 206 (294)
T ss_dssp EECCTTTTTT--------TSCEEEEE-CCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSSHH--------
T ss_pred EecCCccCCC--------CCceEEEe-cCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCCHH--------
Confidence 6432111110 12344443 222 3455688899999999999999999874221
Q ss_pred CCCCCCCCCcccccccccccccchhhhhhHHHHHHHHHhc-CCCceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCC
Q 044080 273 RPSPSRSGFNRKWSRLRFGFHLKCLREELDETILAEFRSK-WNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGR 349 (419)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~i~ef~~~-~~~~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~ 349 (419)
.++.-+.+++++... .-+...+ ++..+-. +.|++...-||+++|=..
T Consensus 207 -------------------------a~~~a~~~l~~Lv~~~Ri~a~~~--vv~~~F~---~il~~s~~ADL~flGl~~ 254 (294)
T 3g40_A 207 -------------------------QAQAAENFLQSLAELARIPNVKM--QVLRENP---IKSSKLPFASLHIFSLDP 254 (294)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHTCCSCEE--EEESSCT---TTSSSCCCCSEEEEECCS
T ss_pred -------------------------HHHHHHHHHHHHHHHhcCCceEE--EecCchH---HHHhhCcCCCEEEEcCCC
Confidence 122234566666665 2122222 2222223 456665448999999875
No 40
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=63.15 E-value=17 Score=28.93 Aligned_cols=57 Identities=7% Similarity=0.000 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEEEcCC
Q 044080 146 TMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRG 208 (419)
Q Consensus 146 sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIlVDRG 208 (419)
...+.|..++++..++.|++|+-++ .||.........+.|.+++-+. +..| .|+|--
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~----mdGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DER 94 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLR----TDLKESAQAGKVLPLVEALRAR-GVEV-ELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCC----CCSSSCCCSSTTHHHHHHHHHT-TCEE-EEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccC----CCCCcCHHHHHHHHHHHHHhcC-CCCE-EEECCC
Confidence 3456799999999999999887655 4566554556678888887666 8888 777753
No 41
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=41.96 E-value=22 Score=30.79 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=32.7
Q ss_pred EEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCC
Q 044080 134 SVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQW 171 (419)
Q Consensus 134 ~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~ 171 (419)
...-.+++-|...|+..|.++|++-.+||||-|+....
T Consensus 89 ~~DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~ 126 (153)
T 2k4m_A 89 GAALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGED 126 (153)
T ss_dssp TEEEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBC
T ss_pred CcCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCc
Confidence 34566788999999999999999999999999987443
No 42
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=40.62 E-value=25 Score=35.26 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=33.0
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhcC-CCeEEEEEEee
Q 044080 224 QRICIIFFGGPDDREALELGGMMAEH-PAVKLTVIKFV 260 (419)
Q Consensus 224 ~~I~v~F~GG~DDReAL~la~rma~~-~~v~lTVvr~~ 260 (419)
.+|+|.|.||+|.-.+|.++.++.+. .+..+.++++-
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvd 51 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVH 51 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEEC
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEE
Confidence 57999999999999999999998876 88999999984
No 43
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=38.86 E-value=22 Score=33.97 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=32.0
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhcCCCeE-EEEEEee
Q 044080 223 AQRICIIFFGGPDDREALELGGMMAEHPAVK-LTVIKFV 260 (419)
Q Consensus 223 ~~~I~v~F~GG~DDReAL~la~rma~~~~v~-lTVvr~~ 260 (419)
..+|++.|.||+|.-.+|.++.++.+..+.. +.++++-
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd 62 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFN 62 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEE
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 3579999999999999999998887766777 8888874
No 44
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=38.28 E-value=1.4e+02 Score=28.32 Aligned_cols=23 Identities=26% Similarity=0.171 Sum_probs=20.8
Q ss_pred ceEEEEecCCcChHHHHHHHHHH
Q 044080 224 QRICIIFFGGPDDREALELGGMM 246 (419)
Q Consensus 224 ~~I~v~F~GG~DDReAL~la~rm 246 (419)
.+|+|-|.||+|+-..|.++.+.
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~ 76 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSC 76 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHH
Confidence 36999999999999999999876
No 45
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.19 E-value=37 Score=32.03 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=27.2
Q ss_pred eEEEEecCCc---ChHHHHHHHHHHhcCCCeEEEEEEe
Q 044080 225 RICIIFFGGP---DDREALELGGMMAEHPAVKLTVIKF 259 (419)
Q Consensus 225 ~I~v~F~GG~---DDReAL~la~rma~~~~v~lTVvr~ 259 (419)
+..++|.||+ |+.++..+|.++.++ +|.|+||-|
T Consensus 108 ~rIIlf~ds~~~~~~~~l~~lak~lkk~-gI~v~vIgF 144 (268)
T 4b4t_W 108 QRIVAFVCSPISDSRDELIRLAKTLKKN-NVAVDIINF 144 (268)
T ss_dssp EEEEEEECSCCSSCHHHHHHHHHHHHHH-TEEEEEEEE
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHHHc-CCEEEEEEe
Confidence 3446778775 777888899888887 899999988
No 46
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=34.49 E-value=26 Score=35.53 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=33.4
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 044080 223 AQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFV 260 (419)
Q Consensus 223 ~~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~ 260 (419)
..+|+|.|.||+|.-.+|.++.++.+..+..+.++++-
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvd 55 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVD 55 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEE
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 35799999999999999999999887778889999884
No 47
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=32.50 E-value=27 Score=32.36 Aligned_cols=34 Identities=6% Similarity=-0.022 Sum_probs=27.9
Q ss_pred eEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 044080 225 RICIIFFGGPDDREALELGGMMAEHPAVKLTVIKF 259 (419)
Q Consensus 225 ~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~ 259 (419)
+|+|-|.||+|+-..|.++.++... +..+.|+++
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~i 76 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFI 76 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEE
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEe
Confidence 5899999999999999999998764 445666765
No 48
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=32.19 E-value=51 Score=27.78 Aligned_cols=71 Identities=21% Similarity=0.132 Sum_probs=46.5
Q ss_pred EEEEEEEEcc--CCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEEEcCCC
Q 044080 134 SVRPTTAISA--LSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRGF 209 (419)
Q Consensus 134 ~V~~~t~Vsp--~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIlVDRG~ 209 (419)
..++...|.. .....+.|..++++..++.|++|+-++ .||+........+.|.+++-+.-+..| .|+|--+
T Consensus 26 ~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~----mdGt~~~~~~~~~~f~~~L~~~~~lpV-~~~DERl 98 (138)
T 1nu0_A 26 TARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLN----MDGTEQPLTARARKFANRIHGRFGVEV-KLHDERL 98 (138)
T ss_dssp EEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEEC----TTSCBCHHHHHHHHHHHHHHHHHCCCE-EEEEEEC
T ss_pred EEeeEEEEEcCCcchHHHHHHHHHHHcCCCEEEEecccC----CCcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 4455555532 223368999999999999999887555 456543333455677777655557888 6777644
No 49
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=31.58 E-value=21 Score=34.60 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=28.4
Q ss_pred eEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 044080 225 RICIIFFGGPDDREALELGGMMAEHPAVKLTVIKF 259 (419)
Q Consensus 225 ~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~ 259 (419)
+++|.|.||+|+-..|.++.++....+..+.++++
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~v 82 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHV 82 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEE
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEE
Confidence 68999999999999999999987543455666765
No 50
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=27.47 E-value=1.6e+02 Score=27.10 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=21.2
Q ss_pred CcChHHHHHHHHHHhcCCCe--EEEEEEe
Q 044080 233 GPDDREALELGGMMAEHPAV--KLTVIKF 259 (419)
Q Consensus 233 G~DDReAL~la~rma~~~~v--~lTVvr~ 259 (419)
.|.|.+||+.|.||.+. +. .++++-+
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~ 63 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSI 63 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEe
Confidence 58999999999999876 44 7777754
No 51
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=27.39 E-value=1.5e+02 Score=27.43 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=21.3
Q ss_pred CcChHHHHHHHHHHhcCCCe--EEEEEEe
Q 044080 233 GPDDREALELGGMMAEHPAV--KLTVIKF 259 (419)
Q Consensus 233 G~DDReAL~la~rma~~~~v--~lTVvr~ 259 (419)
.|.|.+||+.|.||.+. +. .++++-+
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~ 66 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSC 66 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEe
Confidence 58999999999999876 44 7777754
No 52
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=26.40 E-value=42 Score=29.77 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=25.7
Q ss_pred eEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 044080 225 RICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFV 260 (419)
Q Consensus 225 ~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~ 260 (419)
+|+|-|.||+|.-.+|.++.++. + .+.++++-
T Consensus 46 ~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd 77 (215)
T 1sur_A 46 EYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTD 77 (215)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEE
T ss_pred CEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEee
Confidence 69999999999999999998885 3 35566653
No 53
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=24.89 E-value=94 Score=28.97 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=22.7
Q ss_pred EecCCcChHHHHHHHHHHhcCCCe--EEEEEEe
Q 044080 229 IFFGGPDDREALELGGMMAEHPAV--KLTVIKF 259 (419)
Q Consensus 229 ~F~GG~DDReAL~la~rma~~~~v--~lTVvr~ 259 (419)
++.=.|.|.+||+.|.||.+.-+. .++++-+
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~ 64 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSV 64 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 333469999999999999865343 7777744
No 54
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=23.01 E-value=88 Score=26.56 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEEEcCC
Q 044080 144 LSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRG 208 (419)
Q Consensus 144 ~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIlVDRG 208 (419)
.....+.|..++++.+++.|+++.=.+ .+|+........+.|...+..+.++.| ++||--
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~~----~nGt~~~~~~~ar~f~~~L~~~~~lpV-~~vDEr 99 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPKN----MNGTVGPRGEASQTFAKVLETTYNVPV-VLWDER 99 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCCC----BTTBCCHHHHHHHHHHHHHHHHHCSCE-EEECCS
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeeec----CCcchhHHHHHHHHHHHHHHHhhCCCE-EEecCC
Confidence 355789999999999999999875432 345432222234677777776678888 566653
No 55
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=21.28 E-value=1e+02 Score=23.95 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=23.5
Q ss_pred eEEEEecCCcCh----HHHHHHHHHHhcC-CCeEEEEE
Q 044080 225 RICIIFFGGPDD----REALELGGMMAEH-PAVKLTVI 257 (419)
Q Consensus 225 ~I~v~F~GG~DD----ReAL~la~rma~~-~~v~lTVv 257 (419)
++++++.+||.+ ++||.+|..+++. ....++|+
T Consensus 3 k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vf 40 (117)
T 1jx7_A 3 KIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLF 40 (117)
T ss_dssp EEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEE
Confidence 578888888775 5778888888766 33366555
No 56
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=21.00 E-value=89 Score=27.52 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=26.3
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 044080 224 QRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVE 261 (419)
Q Consensus 224 ~~I~v~F~GG~DDReAL~la~rma~~~~v~lTVvr~~~ 261 (419)
.+|++.|.||.|.-.+|.++.++ +..+..+++-.
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~----g~~v~~~~v~~ 40 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKL----GYNPHLITINF 40 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHT----TEEEEEEEEEC
T ss_pred CeEEEEEECcHHHHHHHHHHHHc----CCCeEEEEEeC
Confidence 47999999999998888776653 46777777653
Done!