BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044081
(707 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 183 bits (464), Expect = 4e-46, Method: Composition-based stats.
Identities = 85/124 (68%), Positives = 101/124 (81%)
Query: 486 VRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGH 545
VRRVPLF MDE +LD ICERLKP L T+ +LVREGDPV +MLFI+RG+L+S TT+GG
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 546 FGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVAS 605
GF+N S + GDFCG+ELLTWALDP+ LPSSTR+VKA+TEVEAF L A++L FVAS
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 606 QFRR 609
QFRR
Sbjct: 128 QFRR 131
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
+++ K EQ+M +LPP+ R + + ++++ + DEE+IL EL LR EI
Sbjct: 7 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 65
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
C LV +PLF D + + +L+ + G +++REG ++M FI G + S
Sbjct: 66 NCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 124
Query: 541 TNGGHFGFFNSSRIGPGDFCGEE-LLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAED 599
T G +++ G + GE LLT T SV+A T ++L+ ++
Sbjct: 125 TKGN-----KETKLADGSYFGEICLLTRG----------RRTASVRADTYCRLYSLSVDN 169
Query: 600 LTFVASQF 607
V ++
Sbjct: 170 FNEVLEEY 177
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
+++ K EQ+M +LPP+ R + + ++++ + DEE+IL EL LR EI
Sbjct: 7 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 65
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
C LV +PLF D + + +L+ + G +++REG ++M FI G + S
Sbjct: 66 NCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 124
Query: 541 TNGGHFGFFNSSRIGPGDFCGEE-LLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAED 599
T G +++ G + GE LLT T V+A T ++L+ ++
Sbjct: 125 TKGN-----KETKLADGSYFGEICLLTRG----------RRTARVRADTYCRLYSLSVDN 169
Query: 600 LTFVASQF 607
V ++
Sbjct: 170 FNEVLEEY 177
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
+++ K EQ+M +LP + R + + ++++ + DE++IL EL LR EI
Sbjct: 10 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 68
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
C LV +PLF D + + +LK + G +++REG ++M FI G + T
Sbjct: 69 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 128
Query: 541 TNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
+ S G+ C LLT T SV+A T ++L+ ++
Sbjct: 129 KGNKEMKLSDGSYF--GEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNF 173
Query: 601 TFVASQF 607
V ++
Sbjct: 174 NEVLEEY 180
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
+++ K EQ+M +LP + R + + ++++ + DE++IL EL LR EI
Sbjct: 13 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 71
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
C LV +PLF D + + +LK + G +++REG ++M FI G + T
Sbjct: 72 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 131
Query: 541 TNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
+ S G+ C LLT T SV+A T ++L+ ++
Sbjct: 132 KGNKEMKLSDGSYF--GEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNF 176
Query: 601 TFVASQF 607
V ++
Sbjct: 177 NEVLEEY 183
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
+++ K EQ+M +LP + R + + ++++ + DE++IL EL LR EI
Sbjct: 10 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 68
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
C LV +PLF D + + +LK + G +++REG ++M FI G + T
Sbjct: 69 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 128
Query: 541 TNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
+ S G+ C LLT T SV+A T ++L+ ++
Sbjct: 129 KGNKEMKLSDGSYF--GEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNF 173
Query: 601 TFVASQF 607
V ++
Sbjct: 174 NEVLEEY 180
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
+++ K EQ+M +LP + R + + ++++ + DE++IL EL LR EI
Sbjct: 8 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 66
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
C LV +PLF D + + +LK + G +++REG ++M FI G + T
Sbjct: 67 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 126
Query: 541 TNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
+ S G+ C LLT T SV+A T ++L+ ++
Sbjct: 127 KGNKEMKLSDGSYF--GEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNF 171
Query: 601 TFVASQF 607
V ++
Sbjct: 172 NEVLEEY 178
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
+++ K EQ+M +LP ++R + + ++++ + DEE IL EL LR EI
Sbjct: 13 QYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQG-KIFDEENILSELNDPLREEIVNF 71
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
C LV +PLF D + + +L+ + G +++REG ++M FI G T
Sbjct: 72 NCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVIT 131
Query: 541 TNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
+ + S G+ C LLT T SV+A T ++L+ ++
Sbjct: 132 KSSKEMKLTDGSYF--GEIC---LLTKG----------RRTASVRADTYCRLYSLSVDNF 176
Query: 601 TFVASQF 607
V ++
Sbjct: 177 NEVLEEY 183
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
+++ K EQ+M +LP + R + + ++++ + DE++IL EL LR +I
Sbjct: 10 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNF 68
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
C LV +PLF D + + +LK + G +++REG ++M FI G + T
Sbjct: 69 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 128
Query: 541 TNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
+ S G+ C LLT T SV+A T ++L+ ++
Sbjct: 129 KGNKEMKLSDGSYF--GEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNF 173
Query: 601 TFVASQF 607
V ++
Sbjct: 174 NEVLEEY 180
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
+++ K EQ+M +LPP+ R + + ++++ + DEE+IL EL LR EI
Sbjct: 13 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 71
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
LV +PLF D + + +L+ + G +++REG ++M FI G + S
Sbjct: 72 NXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 130
Query: 541 TNGGHFGFFNSSRIGPGDFCGEE-LLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAED 599
T G +++ G + GE LLT T SV+A T ++L+ ++
Sbjct: 131 TKGN-----KETKLADGSYFGEICLLTRG----------RRTASVRADTYCRLYSLSVDN 175
Query: 600 LTFVASQF 607
V ++
Sbjct: 176 FNEVLEEY 183
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
+++ K EQ+M +LP + R + + ++++ + DE++IL EL LR EI
Sbjct: 12 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 70
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
LV +PLF D + + +LK + G +++REG ++M FI G + S
Sbjct: 71 NNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 129
Query: 541 TNGGHFGFFNSSRIGPGDFCGE-ELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAED 599
T G ++ G + GE LLT T SV+A T ++L+ ++
Sbjct: 130 TKGN-----KEMKLSDGSYFGEISLLTRG----------RRTASVRADTYSRLYSLSVDN 174
Query: 600 LTFVASQF 607
V ++
Sbjct: 175 FNEVLEEY 182
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 15/187 (8%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
++R K E++M +R+LP LR+ + + +Y++ + DE I E+ +R+++ +
Sbjct: 9 QYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANY 67
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
C +LV VP F D + + L+ + ++++EG +M FI +G +D
Sbjct: 68 NCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM 127
Query: 541 TNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
++G ++ + G + GE L + SVK T F+L+ +
Sbjct: 128 SDG-----VIATSLSDGSYFGEICL---------LTRERRVASVKCETYCTLFSLSVQHF 173
Query: 601 TFVASQF 607
V +F
Sbjct: 174 NQVLDEF 180
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 14/171 (8%)
Query: 418 RMEEWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREI 477
R + + D + ++ +LP L + + Q W G+D +L + P +LR +I
Sbjct: 10 RRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADI 69
Query: 478 KRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLD 537
HL L+ ++PLF L + +K G FL+R+GD +Q + F+ G ++
Sbjct: 70 AMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSME 128
Query: 538 SYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAIT 588
N + +G GD G + LT + VI + +VKA+T
Sbjct: 129 VLKDNT------VLAILGKGDLIGSDSLT-----KEQVI--KTNANVKALT 166
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 18/188 (9%)
Query: 421 EWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRH 480
+++ K EQ+ +LP + R + + ++++ + DE++IL EL LR EI
Sbjct: 10 QYQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRYQG-KXFDEDSILGELNGPLREEIVNF 68
Query: 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYT 540
C LV PLF D + +LK + G +++REG ++ FI G + S
Sbjct: 69 NCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVV-SVL 127
Query: 541 TNGGHFGFFNSSRIGPGDFCGEE-LLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAED 599
T G ++ G + GE LLT T SV+A T ++L+ ++
Sbjct: 128 TKGN-----KEXKLSDGSYFGEICLLTRG----------RRTASVRADTYCRLYSLSVDN 172
Query: 600 LTFVASQF 607
V ++
Sbjct: 173 FNEVLEEY 180
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 484 NLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNG 543
LV VPLF ++ +L I L+ G + R G+P +M F+V G + T
Sbjct: 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP-- 285
Query: 544 GHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFV 603
N +GPG F GE L +PR + +V A T V +L + D +
Sbjct: 286 ------NPVELGPGAFFGEMALISG-EPR--------SATVSAATTVSLLSLHSADFQML 330
Query: 604 ASQFRRLHSKQLRHKFRHHSHHWRTWAA 631
S S ++ FR + R AA
Sbjct: 331 CS-----SSPEIAEIFRKTALERRGAAA 353
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGG 544
LV VPLF ++ +L I L+ G + R G+P +M F+V G + T
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 68
Query: 545 HFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVA 604
N +GPG F GE L + +PR + ++T S+ ++ + F + +A
Sbjct: 69 -----NPVELGPGAFFGEMALI-SGEPRSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 121
Query: 605 SQFRR 609
FR+
Sbjct: 122 EIFRK 126
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGG 544
LV VPLF ++ +L I L+ G + R G+P +M F+V G + T
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 68
Query: 545 HFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVA 604
N +GPG F GE L + +PR + ++T S+ ++ + F + +A
Sbjct: 69 -----NPVELGPGAFFGEMALI-SGEPRSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 121
Query: 605 SQFRR 609
FR+
Sbjct: 122 EIFRK 126
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGG 544
LV VPLF ++ +L I L+ G + R G+P +M F+V G + T
Sbjct: 16 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 72
Query: 545 HFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVA 604
N +GPG F GE L + +PR + ++T S+ ++ + F + +A
Sbjct: 73 -----NPVELGPGAFFGEMALI-SGEPRSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 125
Query: 605 SQFRR 609
FR+
Sbjct: 126 EIFRK 130
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGG 544
LV VPLF ++ +L I L+ G + R G+P +M F+V G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 545 HFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVA 604
N +GPG F GE L + +PR + ++T S+ ++ + F + +A
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPRSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 123
Query: 605 SQFRR 609
FR+
Sbjct: 124 EIFRK 128
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGG 544
LV VPLF ++ +L I L+ G + R G+P +M F+V G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 545 HFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVA 604
N +GPG F GE L + +P + ++T S+ ++ + F + +A
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPESATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 123
Query: 605 SQFRR 609
FR+
Sbjct: 124 EIFRK 128
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGG 544
LV VPLF ++ +L I L+ G + R G+P +M F+V G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 545 HFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVA 604
N +GPG F GE L + +P + ++T S+ ++ + F + +A
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPWSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 123
Query: 605 SQFRR 609
FR+
Sbjct: 124 EIFRK 128
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%)
Query: 478 KRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLD 537
KR + + +V + +D+ + + L+PV G +V +G+P + I+ G
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 210
Query: 538 SYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVK 585
+ F R+GP D+ GE L TV+ + VK
Sbjct: 211 VLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVK 258
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 491 LFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-------- 542
LF +D+ I + + PV G ++++GD I +G++D Y N
Sbjct: 46 LFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGE 105
Query: 543 GGHFG 547
GG FG
Sbjct: 106 GGSFG 110
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%)
Query: 478 KRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLD 537
KR + + +V + +D+ + + L+PV G +V +G+P + I+ G
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 206
Query: 538 SYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVK 585
+ F R+GP D+ GE L TV+ + VK
Sbjct: 207 VLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVK 254
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 491 LFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-------- 542
LF +D+ I + + PV G ++++GD I +G++D Y N
Sbjct: 42 LFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGE 101
Query: 543 GGHFG 547
GG FG
Sbjct: 102 GGSFG 106
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%)
Query: 478 KRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLD 537
KR + + +V + +D+ + + L+PV G +V +G+P + I+ G
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 208
Query: 538 SYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVK 585
+ F R+GP D+ GE L TV+ + VK
Sbjct: 209 VLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVK 256
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 491 LFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-------- 542
LF +D+ I + + PV G ++++GD I +G++D Y N
Sbjct: 44 LFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGE 103
Query: 543 GGHFG 547
GG FG
Sbjct: 104 GGSFG 108
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLD-SYTTNG 543
++ R +F ++ + + + ++L+PV +G + EG+P ++ I+ G++
Sbjct: 7 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 66
Query: 544 GHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
G + +GP D GE + DP P T S ITEV A ++ + L
Sbjct: 67 GRENLL--TIMGPSDMFGELSI---FDPGP------RTSSATTITEVRAVSMDRDAL 112
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLD-SYTTNG 543
++ R +F ++ + + + ++L+PV +G + EG+P ++ I+ G++
Sbjct: 5 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 64
Query: 544 GHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
G + +GP D GE + DP P T S ITEV A ++ + L
Sbjct: 65 GRENLL--TIMGPSDMFGELSI---FDPGP------RTSSATTITEVRAVSMDRDAL 110
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLD-SYTTNG 543
++ R +F ++ + + + ++L+PV +G + EG+P ++ I+ G++
Sbjct: 4 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 63
Query: 544 GHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
G + +GP D GE + DP P T S ITEV A ++ + L
Sbjct: 64 GRENLL--TIMGPSDMFGELSI---FDPGP------RTSSATTITEVRAVSMDRDAL 109
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 463 EAILHELPFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREG 522
E +L P D+R +I HL + + P F + L + + V G + G
Sbjct: 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65
Query: 523 DPVQQMLFIVRGQLD 537
+ V + F+V G L+
Sbjct: 66 ESVDSLCFVVSGSLE 80
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLD-SYTTNG 543
++ R +F ++ + + + ++L+PV +G + EG+P ++ I+ G++
Sbjct: 29 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 88
Query: 544 GHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
G + +GP D GE + DP P T S ITEV A ++ + L
Sbjct: 89 GRENLL--TIMGPSDMFGELSI---FDPGP------RTSSATTITEVRAVSMDRDAL 134
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLD-SYTTNG 543
++ R +F ++ + + + ++L+PV +G + EG+P ++ I+ G++
Sbjct: 29 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 88
Query: 544 GHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDL 600
G GP D GE + DP P T S ITEV A ++ + L
Sbjct: 89 GRENLLTIX--GPSDMFGELSI---FDPGP------RTSSATTITEVRAVSMDRDAL 134
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 42/108 (38%)
Query: 478 KRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLD 537
KR + + +V + +++ + + L+PV G +V +G+P I G
Sbjct: 242 KRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTAS 301
Query: 538 SYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVK 585
+ + R+GP D+ GE L TV+ + VK
Sbjct: 302 VLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVK 349
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 486 VRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGH 545
+R LF+++D ++ L+ KG ++++GD + +G +D Y +
Sbjct: 9 IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNK- 67
Query: 546 FGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSS 580
NSS GPG GE L + PR ++ +S
Sbjct: 68 ---VNSS--GPGSSFGELALMYN-SPRAATVVATS 96
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 40/89 (44%)
Query: 477 IKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQL 536
IK + ++ VP F + E IL + + L+ G +++R+G I +G++
Sbjct: 150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV 209
Query: 537 DSYTTNGGHFGFFNSSRIGPGDFCGEELL 565
+ + + +G GD+ GE+ L
Sbjct: 210 NVTREDSPNEDPVFLRTLGKGDWFGEKAL 238
>pdb|1K4S|A Chain A, Human Dna Topoisomerase I In Covalent Complex With A 22
Base Pair Dna Duplex
pdb|1K4T|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Topotecan And Covalent Complex With A 22 Base
Pair Dna Duplex
pdb|1SC7|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Mj-Ii-38 And Covalent Complex With A
22 Base Pair Dna Duplex
pdb|1T8I|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Camptothecin And Covalent Complex With A 22 Base
Pair Dna Duplex
pdb|1TL8|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Ai-Iii-52 And Covalent Complex With A
22 Base Pair Dna Duplex
Length = 592
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 63 RGRVFSEDYEKVKKHIILYPNGKTIRLWSKIFLVACLVSVFLDPLFFYLPIVRR 116
+G VF+ YE + +++ Y +GK ++L K VA + LD + I R+
Sbjct: 50 KGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRK 103
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 591
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 63 RGRVFSEDYEKVKKHIILYPNGKTIRLWSKIFLVACLVSVFLDPLFFYLPIVRR 116
+G VF+ YE + +++ Y +GK ++L K VA + LD + I R+
Sbjct: 49 KGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRK 102
>pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX
pdb|1A36|A Chain A, Topoisomerase IDNA COMPLEX
Length = 591
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 63 RGRVFSEDYEKVKKHIILYPNGKTIRLWSKIFLVACLVSVFLDPLFFYLPIVRR 116
+G VF+ YE + +++ Y +GK ++L K VA + LD + I R+
Sbjct: 49 KGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRK 102
>pdb|1SEU|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indolocarbazole Sa315f And Covalent Complex With A 22
Base Pair Dna Duplex
Length = 592
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 63 RGRVFSEDYEKVKKHIILYPNGKTIRLWSKIFLVACLVSVFLDPLFFYLPIVRR 116
+G VF+ YE + +++ Y +GK ++L K VA + LD + I R+
Sbjct: 50 KGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRK 103
>pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F
Length = 592
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 63 RGRVFSEDYEKVKKHIILYPNGKTIRLWSKIFLVACLVSVFLDPLFFYLPIVRR 116
+G VF+ YE + +++ Y +GK ++L K VA + LD + I R+
Sbjct: 50 KGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRK 103
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 491 LFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-------- 542
LF +D+ I + + PV G ++++GD I +G++D Y N
Sbjct: 45 LFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGE 104
Query: 543 GGHFG 547
GG FG
Sbjct: 105 GGSFG 109
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 491 LFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-------- 542
LF +D+ I + + PV G ++++GD I +G++D Y N
Sbjct: 52 LFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGE 111
Query: 543 GGHFG 547
GG FG
Sbjct: 112 GGSFG 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,430,150
Number of Sequences: 62578
Number of extensions: 850732
Number of successful extensions: 2563
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2519
Number of HSP's gapped (non-prelim): 48
length of query: 707
length of database: 14,973,337
effective HSP length: 106
effective length of query: 601
effective length of database: 8,340,069
effective search space: 5012381469
effective search space used: 5012381469
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)