Query 044081
Match_columns 707
No_of_seqs 557 out of 3163
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 11:15:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 6E-121 1E-125 1029.7 50.2 567 76-706 66-638 (727)
2 PLN03192 Voltage-dependent pot 100.0 2.6E-67 5.6E-72 628.3 53.8 452 75-621 49-500 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 8.8E-63 1.9E-67 518.5 35.1 426 95-615 4-431 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 1.3E-63 2.7E-68 527.7 27.6 462 73-617 204-668 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 5.9E-56 1.3E-60 471.6 32.4 422 78-609 218-643 (815)
6 KOG3713 Voltage-gated K+ chann 99.9 2.1E-23 4.5E-28 223.4 15.2 201 127-426 237-444 (477)
7 KOG1545 Voltage-gated shaker-l 99.6 1.9E-16 4.1E-21 161.9 7.3 203 127-422 250-456 (507)
8 PRK09392 ftrB transcriptional 99.6 9.2E-15 2E-19 150.2 16.9 131 483-624 6-136 (236)
9 PRK11753 DNA-binding transcrip 99.5 2.3E-12 5E-17 129.8 19.8 118 493-620 6-124 (211)
10 PRK11161 fumarate/nitrate redu 99.4 2.6E-12 5.7E-17 131.8 16.5 123 486-620 15-139 (235)
11 cd00038 CAP_ED effector domain 99.4 2.6E-12 5.5E-17 114.7 13.9 112 491-613 1-113 (115)
12 PF00520 Ion_trans: Ion transp 99.4 1.5E-12 3.2E-17 128.7 12.6 193 134-408 1-200 (200)
13 PRK10402 DNA-binding transcrip 99.4 4.3E-12 9.3E-17 129.6 14.4 108 501-619 25-133 (226)
14 PF00027 cNMP_binding: Cyclic 99.4 6.3E-12 1.4E-16 108.2 11.9 90 510-609 2-91 (91)
15 smart00100 cNMP Cyclic nucleot 99.3 2.7E-11 5.9E-16 108.5 15.2 116 491-615 1-117 (120)
16 COG0664 Crp cAMP-binding prote 99.3 7.2E-11 1.6E-15 118.1 18.7 127 487-624 3-130 (214)
17 KOG4390 Voltage-gated A-type K 99.3 1.9E-13 4.2E-18 141.0 -3.5 183 127-416 224-413 (632)
18 PRK09391 fixK transcriptional 99.3 5.7E-11 1.2E-15 121.7 14.3 165 502-684 33-206 (230)
19 TIGR03697 NtcA_cyano global ni 99.2 1.2E-10 2.6E-15 115.6 14.8 97 515-620 1-98 (193)
20 KOG1419 Voltage-gated K+ chann 99.2 1.1E-10 2.5E-15 126.2 12.8 89 357-452 267-355 (654)
21 KOG0614 cGMP-dependent protein 99.2 2.1E-11 4.5E-16 131.1 7.1 127 480-615 268-395 (732)
22 PRK13918 CRP/FNR family transc 99.2 4.6E-10 9.9E-15 112.3 16.1 155 506-682 5-174 (202)
23 PLN02868 acyl-CoA thioesterase 99.2 1.6E-10 3.5E-15 128.5 13.7 113 483-608 7-119 (413)
24 COG2905 Predicted signal-trans 99.1 5.8E-10 1.2E-14 121.9 14.9 119 483-615 6-124 (610)
25 KOG1113 cAMP-dependent protein 99.1 1E-10 2.2E-15 121.1 8.6 144 483-651 121-264 (368)
26 KOG0614 cGMP-dependent protein 99.1 8E-11 1.7E-15 126.7 7.0 128 478-620 148-275 (732)
27 PF07885 Ion_trans_2: Ion chan 98.9 1.5E-08 3.3E-13 85.7 10.6 55 359-413 24-78 (79)
28 KOG1113 cAMP-dependent protein 98.8 1.1E-08 2.3E-13 106.3 7.5 118 478-609 234-351 (368)
29 KOG1420 Ca2+-activated K+ chan 98.6 4.2E-08 9E-13 106.3 5.7 137 358-502 287-428 (1103)
30 PF08412 Ion_trans_N: Ion tran 98.3 6.1E-07 1.3E-11 74.5 3.1 70 30-111 1-70 (77)
31 KOG2968 Predicted esterase of 98.2 1.9E-06 4.2E-11 98.4 6.5 114 498-622 499-613 (1158)
32 KOG3684 Ca2+-activated K+ chan 98.0 0.001 2.2E-08 72.0 21.0 91 357-455 285-375 (489)
33 PF01007 IRK: Inward rectifier 97.8 0.00016 3.4E-09 77.8 12.4 61 358-418 83-145 (336)
34 PRK10537 voltage-gated potassi 97.8 4E-05 8.6E-10 84.4 7.6 55 358-412 167-221 (393)
35 KOG2968 Predicted esterase of 97.4 0.00085 1.8E-08 77.5 11.3 113 503-619 111-224 (1158)
36 KOG1418 Tandem pore domain K+ 97.2 0.00072 1.6E-08 75.1 7.2 60 360-419 116-175 (433)
37 PRK11832 putative DNA-binding 97.0 0.015 3.3E-07 57.8 13.9 96 499-608 14-110 (207)
38 PF04831 Popeye: Popeye protei 97.0 0.016 3.4E-07 54.4 12.6 108 494-611 14-123 (153)
39 KOG2302 T-type voltage-gated C 96.5 0.14 3E-06 60.2 18.1 88 73-189 1101-1200(1956)
40 KOG3542 cAMP-regulated guanine 96.1 0.0086 1.9E-07 67.1 5.6 114 480-608 277-392 (1283)
41 KOG4404 Tandem pore domain K+ 95.6 0.063 1.4E-06 56.1 9.2 56 360-415 187-250 (350)
42 PLN03223 Polycystin cation cha 94.4 3.4 7.3E-05 51.3 20.3 32 384-415 1394-1425(1634)
43 KOG3827 Inward rectifier K+ ch 94.3 0.23 4.9E-06 53.3 9.3 60 360-419 113-174 (400)
44 KOG4404 Tandem pore domain K+ 93.8 0.01 2.3E-07 61.8 -1.7 46 359-404 80-125 (350)
45 KOG3193 K+ channel subunit [In 93.4 0.14 3.1E-06 56.5 6.0 39 362-400 220-258 (1087)
46 KOG3542 cAMP-regulated guanine 91.3 0.27 5.8E-06 55.7 5.1 104 470-596 23-126 (1283)
47 KOG2301 Voltage-gated Ca2+ cha 91.0 1.6 3.6E-05 55.8 12.1 46 128-193 870-916 (1592)
48 KOG1418 Tandem pore domain K+ 90.8 0.054 1.2E-06 60.1 -0.9 53 358-410 241-301 (433)
49 KOG3676 Ca2+-permeable cation 83.9 15 0.00033 43.4 13.3 74 372-446 601-681 (782)
50 KOG3614 Ca2+/Mg2+-permeable ca 74.6 2.5E+02 0.0054 35.7 20.1 63 177-243 856-919 (1381)
51 KOG0498 K+-channel ERG and rel 73.0 23 0.0005 42.2 10.7 40 468-507 372-416 (727)
52 PF07883 Cupin_2: Cupin domain 71.5 6.7 0.00015 31.3 4.3 45 510-561 3-48 (71)
53 TIGR00870 trp transient-recept 71.0 2.4E+02 0.0053 34.0 27.2 47 382-428 585-632 (743)
54 PRK13290 ectC L-ectoine syntha 65.3 32 0.0007 31.6 7.9 68 509-595 39-106 (125)
55 KOG2301 Voltage-gated Ca2+ cha 64.8 2.3E+02 0.0049 37.3 17.5 49 127-196 470-519 (1592)
56 COG4709 Predicted membrane pro 63.6 30 0.00064 34.0 7.4 71 425-497 6-80 (195)
57 PF14377 DUF4414: Domain of un 61.9 10 0.00022 34.0 3.8 45 436-480 51-105 (108)
58 PF08006 DUF1700: Protein of u 59.9 43 0.00094 32.7 8.3 55 425-481 6-64 (181)
59 PF00612 IQ: IQ calmodulin-bin 58.2 12 0.00026 22.8 2.5 17 630-646 3-19 (21)
60 PF13314 DUF4083: Domain of un 54.0 64 0.0014 25.3 6.3 51 385-435 4-57 (58)
61 PF00060 Lig_chan: Ligand-gate 53.4 13 0.00029 34.4 3.3 75 356-436 41-115 (148)
62 PLN03223 Polycystin cation cha 51.8 5.7E+02 0.012 33.0 17.0 16 177-192 1208-1224(1634)
63 PF05899 Cupin_3: Protein of u 51.2 24 0.00052 29.1 4.1 42 512-561 14-55 (74)
64 PLN03192 Voltage-dependent pot 49.2 5.9E+02 0.013 31.3 20.3 42 436-482 357-398 (823)
65 PF10011 DUF2254: Predicted me 45.8 93 0.002 34.3 8.9 62 356-417 97-158 (371)
66 TIGR03037 anthran_nbaC 3-hydro 43.7 46 0.001 31.9 5.2 45 513-561 36-81 (159)
67 PF07697 7TMR-HDED: 7TM-HD ext 39.6 2.4E+02 0.0052 28.0 10.2 33 494-526 173-207 (222)
68 PF03010 GP4: GP4; InterPro: 39.4 13 0.00029 32.6 0.8 14 3-16 12-25 (152)
69 smart00835 Cupin_1 Cupin. This 38.2 91 0.002 29.1 6.4 54 507-562 32-87 (146)
70 smart00015 IQ Short calmodulin 36.7 41 0.00088 21.6 2.6 18 629-646 4-21 (26)
71 PF01484 Col_cuticle_N: Nemato 35.8 1.8E+02 0.0039 21.8 6.6 43 387-429 7-49 (53)
72 COG1917 Uncharacterized conser 35.2 86 0.0019 28.6 5.6 49 508-563 46-95 (131)
73 COG0662 {ManC} Mannose-6-phosp 31.8 1.1E+02 0.0023 28.1 5.6 48 506-560 37-85 (127)
74 KOG3609 Receptor-activated Ca2 31.0 1E+03 0.023 28.9 16.0 73 361-435 555-633 (822)
75 PF14377 DUF4414: Domain of un 30.8 90 0.002 27.8 4.8 48 437-484 8-68 (108)
76 PRK13264 3-hydroxyanthranilate 30.5 91 0.002 30.5 5.0 59 523-598 52-110 (177)
77 PF08763 Ca_chan_IQ: Voltage g 28.9 68 0.0015 22.6 2.7 21 628-648 9-29 (35)
78 KOG4440 NMDA selective glutama 28.7 1.6E+02 0.0034 34.2 7.1 52 362-413 616-667 (993)
79 PF12973 Cupin_7: ChrR Cupin-l 26.9 1.8E+02 0.004 24.7 5.9 64 506-594 25-88 (91)
80 PF13623 SurA_N_2: SurA N-term 26.6 1.7E+02 0.0037 27.6 6.1 46 390-435 9-67 (145)
81 PRK04190 glucose-6-phosphate i 25.7 2.6E+02 0.0057 27.7 7.4 51 509-561 72-131 (191)
82 TIGR03404 bicupin_oxalic bicup 25.2 1.8E+02 0.0039 32.0 6.8 52 508-561 70-121 (367)
83 TIGR03404 bicupin_oxalic bicup 24.0 1.9E+02 0.004 31.9 6.7 52 507-560 247-299 (367)
84 PF02037 SAP: SAP domain; Int 23.3 1.4E+02 0.0031 20.7 3.6 26 425-450 5-35 (35)
85 PRK11171 hypothetical protein; 22.7 2E+02 0.0044 30.0 6.4 50 506-562 185-235 (266)
86 TIGR02523 type_IV_pilV type IV 22.0 3.5E+02 0.0077 25.3 7.2 31 382-412 4-34 (139)
87 COG3837 Uncharacterized conser 21.9 1.2E+02 0.0026 29.0 3.9 38 519-563 58-95 (161)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-121 Score=1029.70 Aligned_cols=567 Identities=47% Similarity=0.817 Sum_probs=512.8
Q ss_pred cceeECCCChhHHHHHHHHHHHHHHHHHHhhhhccccccccccceeecCCccchhhhHHHHHHHHHHHHHHHHhhhceeE
Q 044081 76 KHIILYPNGKTIRLWSKIFLVACLVSVFLDPLFFYLPIVRREEMCIDNGVRTLETTLTIIRILADVFYVIQIFVCFRTAY 155 (707)
Q Consensus 76 ~~~ii~P~s~~~~~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~~f~~di~l~f~tay 155 (707)
.++|+||+|+++..||++++++|+|+++++|++||++.+++...| +| ..+...++++|+++|+||++||+++|||||
T Consensus 66 ~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d-~~~~~~l~v~d~ivD~fflvdIvL~Frtay 142 (727)
T KOG0498|consen 66 RKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--ID-GKLAAPLTVLDTIVDIFFLVDIVLNFRTAY 142 (727)
T ss_pred cceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--cc-ccccCceeeHHHHHHHHHHHHHHHhheEEE
Confidence 344999999999999999999999999999999999999999999 78 889999999999999999999999999999
Q ss_pred EcCCCcccCCCeEeeChHHHHHHhhhhchHHHHHHhCchhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhHHHhhhh
Q 044081 156 VAPSSRVFGRGEFVVEPSKIASRCLQRGFWLDFIAALPLPQVLIWVVVPNLEIPAVTMTVSILRILILFQYLPRVFLIFP 235 (707)
Q Consensus 156 ~~~~s~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~~~l~q~l~Rl~ri~~ 235 (707)
++++|+ ++|.||++||+|||++||++|++|+||+|+|++|.++ ...........|..+.++||||||+|++|
T Consensus 143 v~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~ 214 (727)
T KOG0498|consen 143 VDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVIP 214 (727)
T ss_pred ECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999974 7999999999999999999999999999999999887 11122333447888888999999999999
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCCCCCccccccc
Q 044081 236 LTSKIVEATGVVTQKAWAAAAYNLLLYMLASHVSGACWYLLSVERQEACWRSACNLEKPLCELGFFDCRRLEDPQRINWF 315 (707)
Q Consensus 236 l~~~i~~~~g~~~~~~~~~~~~~l~l~~l~~H~~gc~wyl~~~~~~~~cw~~~c~~~~~~c~~~~~~c~~~~~~~~~~W~ 315 (707)
+++++.+.+|++.+|||+++++++++|||++||+||+||++|++|.++||+++| |+
T Consensus 215 l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~t------------------------w~ 270 (727)
T KOG0498|consen 215 LFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKAT------------------------WL 270 (727)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc------------------------cc
Confidence 999999999999999999999999999999999999999999999999997652 22
Q ss_pred ccccccccccCCCCCCCCCCcccccccchhhhhccCCCCchhhHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHH
Q 044081 316 KSSNVSNICQDGYNGPDINIGFYQFGIYTDAALNNVTGSSILNKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIAT 395 (707)
Q Consensus 316 ~~~~l~~~c~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i 395 (707)
....+.-.| .+ ..|+||+|.+++ +|++|+|||++||||+|||+++|+|..|++|+|++|+
T Consensus 271 ~~l~~~~~~-------~~--~~~~fg~~s~~~-----------kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi 330 (727)
T KOG0498|consen 271 GSLGRLLSC-------YN--LSFTFGIYSLAL-----------KYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIML 330 (727)
T ss_pred ccccccccc-------Cc--ccccccchhHHH-----------HHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHH
Confidence 111101112 11 237788887654 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCcchHH
Q 044081 396 LGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRR 475 (707)
Q Consensus 396 ~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~r~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~ 475 (707)
+|+++||++||||++++|+++++.++||.|++|+++||++|+||++||+||++|+||+|+.++|+||+++|++||++||+
T Consensus 331 ~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~ 410 (727)
T KOG0498|consen 331 FGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRR 410 (727)
T ss_pred HhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecC
Q 044081 476 EIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIG 555 (707)
Q Consensus 476 ~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~ 555 (707)
||++|+|.++++++|+|+++|++++++||.++++..|+|||+|++|||++++||||.+|.+++.++++|+ +.+...|+
T Consensus 411 dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~--~~~~~~L~ 488 (727)
T KOG0498|consen 411 DIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGG--FFVVAILG 488 (727)
T ss_pred HHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCc--eEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999888874 44589999
Q ss_pred CCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhhHHHHHHH
Q 044081 556 PGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRTWAACFIQ 635 (707)
Q Consensus 556 ~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~~~~~~iq 635 (707)
+||+|||+.++|+++ . ++++||+|+|.|+++.|+++||++++++||++++++++|++++|+++||+|++|+||
T Consensus 489 ~Gd~~GeEl~~~~~~------~-p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq 561 (727)
T KOG0498|consen 489 PGDFFGEELLTWCLD------L-PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQ 561 (727)
T ss_pred CCCccchHHHHHHhc------C-CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHH
Confidence 999999888888875 2 238999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHhhhcCCC------CCCCCCCCchhhHhhhhHHHHhhcccccccCCCCCcccccCCCCCCCCCCC
Q 044081 636 AAWRRHKNLKETAKLKSGSE------PGQPSGTGSFWDHYAESLIARTSSGSFKQAAGPSSDVVYSSLQKLGEPGFK 706 (707)
Q Consensus 636 ~a~r~~~~r~~~~~~~~~e~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (707)
++||+|.+|+...++..+++ ...+...++++..+|+++|+|.++.++.++........++.++||.||||+
T Consensus 562 ~a~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~ 638 (727)
T KOG0498|consen 562 AAWRRHIKRKGEEELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFS 638 (727)
T ss_pred HHHHHHHHhhccchhhhhcchhhhccccccchhhhhcccccccccccCCCccccccccCccccccccCCCCCCCCcc
Confidence 99999999998877766542 223445789999999999999999997765322233368899999999997
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=2.6e-67 Score=628.33 Aligned_cols=452 Identities=19% Similarity=0.357 Sum_probs=377.1
Q ss_pred ccceeECCCChhHHHHHHHHHHHHHHHHHHhhhhccccccccccceeecCCccchhhhHHHHHHHHHHHHHHHHhhhcee
Q 044081 75 KKHIILYPNGKTIRLWSKIFLVACLVSVFLDPLFFYLPIVRREEMCIDNGVRTLETTLTIIRILADVFYVIQIFVCFRTA 154 (707)
Q Consensus 75 ~~~~ii~P~s~~~~~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~~f~~di~l~f~ta 154 (707)
.+++||+|.+++++.||.+++++.+|+++++|+.+++.. ......+.+++.++|++|++||+++|+||
T Consensus 49 ~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~------------~~~~~~~~~~d~i~~~~F~iDi~l~f~~a 116 (823)
T PLN03192 49 SDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLN------------ASPKRGLEIADNVVDLFFAVDIVLTFFVA 116 (823)
T ss_pred cCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeC------------CCCCCCeeeHHHHHHHHHHHHHHhheeEE
Confidence 355699999999999999999999999999999875521 11223467889999999999999999999
Q ss_pred EEcCCCcccCCCeEeeChHHHHHHhhhhchHHHHHHhCchhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhHHHhhh
Q 044081 155 YVAPSSRVFGRGEFVVEPSKIASRCLQRGFWLDFIAALPLPQVLIWVVVPNLEIPAVTMTVSILRILILFQYLPRVFLIF 234 (707)
Q Consensus 155 y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~~~l~q~l~Rl~ri~ 234 (707)
|++++ .|.+|.||++|++||+++||++|++|++|++.+..... .... ......+|+++|+ .|+.|+.
T Consensus 117 y~d~~-----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~-~~~~---~~~~~~~l~llrl----~Rl~ri~ 183 (823)
T PLN03192 117 YIDPR-----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLIT-GTVK---LNLSYSLLGLLRF----WRLRRVK 183 (823)
T ss_pred EEeCC-----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhc-CCcc---chHHHHHHHHHHH----HHHHHHH
Confidence 99986 48999999999999999999999999999987753321 1111 1112234444433 3444555
Q ss_pred hccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCCCCCcccccc
Q 044081 235 PLTSKIVEATGVVTQKAWAAAAYNLLLYMLASHVSGACWYLLSVERQEACWRSACNLEKPLCELGFFDCRRLEDPQRINW 314 (707)
Q Consensus 235 ~l~~~i~~~~g~~~~~~~~~~~~~l~l~~l~~H~~gc~wyl~~~~~~~~cw~~~c~~~~~~c~~~~~~c~~~~~~~~~~W 314 (707)
+++.++.+...+ ...|...+..++..++++||+||+||+++.. + ...+.+|
T Consensus 184 ~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~--------------------~-------~~~~~~W 234 (823)
T PLN03192 184 QLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADR--------------------Y-------PHQGKTW 234 (823)
T ss_pred HHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------c-------CCCCCch
Confidence 555544443222 2234444444445556899999999999721 0 1345678
Q ss_pred cccccccccccCCCCCCCCCCcccccccchhhhhccCCCCchhhHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHH
Q 044081 315 FKSSNVSNICQDGYNGPDINIGFYQFGIYTDAALNNVTGSSILNKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIA 394 (707)
Q Consensus 315 ~~~~~l~~~c~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~ 394 (707)
+... ..++.+.+++.+|++|+||+++|||||||||++|.|..|++|++++|
T Consensus 235 i~~~-----------------------------~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~m 285 (823)
T PLN03192 235 IGAV-----------------------------IPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYM 285 (823)
T ss_pred HHHh-----------------------------hhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHH
Confidence 7421 01234578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCcchH
Q 044081 395 TLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLR 474 (707)
Q Consensus 395 i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~r~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr 474 (707)
++|+++||++||+|++++.+.+.+.++|+++++.+++||+++++|+.||+||++|++|+|+. .+.++++++++||++||
T Consensus 286 l~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr 364 (823)
T PLN03192 286 LFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSIC 364 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999974 56889999999999999
Q ss_pred HHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeec
Q 044081 475 REIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRI 554 (707)
Q Consensus 475 ~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l 554 (707)
.+|..+++.+.++++|+|++++++++.+++..++++.|+|||.|+.+||+++++|||.+|.|++...+++++.+ +..+
T Consensus 365 ~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~--l~~l 442 (823)
T PLN03192 365 KSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERV--VGTL 442 (823)
T ss_pred HHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCccee--eEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999998776666665 6799
Q ss_pred CCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHH
Q 044081 555 GPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRH 621 (707)
Q Consensus 555 ~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~ 621 (707)
++|++|||.+++ ...+++++++|.++|+++.|++++|.++++++|+.....+++..+.
T Consensus 443 ~~Gd~FGE~~~l---------~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~ 500 (823)
T PLN03192 443 GCGDIFGEVGAL---------CCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQH 500 (823)
T ss_pred cCCCEecchHHh---------cCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999887 2345789999999999999999999999999999888777776653
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-63 Score=518.54 Aligned_cols=426 Identities=22% Similarity=0.368 Sum_probs=355.0
Q ss_pred HHHHHHHHHHhhhhccccccccccceeecCCccchhhhHHHHHHHHHHHHHHHHhhhceeEEcCCCcccCCCeEeeChHH
Q 044081 95 LVACLVSVFLDPLFFYLPIVRREEMCIDNGVRTLETTLTIIRILADVFYVIQIFVCFRTAYVAPSSRVFGRGEFVVEPSK 174 (707)
Q Consensus 95 li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~~f~~di~l~f~tay~~~~s~~~~~G~lV~d~~~ 174 (707)
.+.++|++++.+..+.|+-++ ......|.++++++|++|++||++++||+|+++ |.+|.|..+
T Consensus 4 s~~vLYN~~~li~r~~F~di~----------~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleq-------GllV~~~~K 66 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDIQ----------SSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQ-------GLLVKDTSK 66 (536)
T ss_pred EEehHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc-------CeeehhhHH
Confidence 356789999999877777653 445678899999999999999999999999995 999999999
Q ss_pred HHHHhhhh-chHHHHHHhCchhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhHHHhhhhccchhhhhhhhHHHHHHH
Q 044081 175 IASRCLQR-GFWLDFIAALPLPQVLIWVVVPNLEIPAVTMTVSILRILILFQYLPRVFLIFPLTSKIVEATGVVTQKAWA 253 (707)
Q Consensus 175 Ia~~Yl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~~~l~q~l~Rl~ri~~l~~~i~~~~g~~~~~~~~ 253 (707)
..+||..| .|.+|++|++|++.++++... ....|+ .||+|++|+..-+.++.+- +....+
T Consensus 67 l~~hY~~s~~f~lD~l~liP~D~l~~~~~~-----------~~~~r~-------nRllk~yRl~~F~~rTetr-T~~Pn~ 127 (536)
T KOG0500|consen 67 LRKHYVHSTQFKLDVLSLIPLDLLLFKDGS-----------ASLERL-------NRLLKIYRLFEFFDRTETR-TTYPNA 127 (536)
T ss_pred HHHHHHHhhhhhhhhhhhcchhHHhhcCCc-----------chHHHH-------HHHHHHHHHHHHHHHhccc-cCCchH
Confidence 99999998 999999999999999876421 112333 3333344444444343321 111234
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCCCCCcccccccccccccccccCCCCCCC
Q 044081 254 AAAYNLLLYML-ASHVSGACWYLLSVERQEACWRSACNLEKPLCELGFFDCRRLEDPQRINWFKSSNVSNICQDGYNGPD 332 (707)
Q Consensus 254 ~~~~~l~l~~l-~~H~~gc~wyl~~~~~~~~cw~~~c~~~~~~c~~~~~~c~~~~~~~~~~W~~~~~l~~~c~~~~~~~~ 332 (707)
..+.+|+.|.+ +.||.||++|++|.. .+.+.++|.... +. +|.
T Consensus 128 fri~~lv~~~~ilfHWNaClYf~iS~~---------------------------~g~~~d~wvY~~-i~--------d~~ 171 (536)
T KOG0500|consen 128 FRISKLVHYCLILFHWNACLYFLISKA---------------------------IGFTTDDWVYPK-IN--------DPE 171 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhHh---------------------------cCccccccccCC-cc--------Ccc
Confidence 45677777665 799999999999942 124455686321 10 111
Q ss_pred CCCcccccccchhhhhccCCCCchhhHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044081 333 INIGFYQFGIYTDAALNNVTGSSILNKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYL 412 (707)
Q Consensus 333 ~~~~~~~~g~~~~a~~~~~~~~~~~~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l 412 (707)
. .+-...++..+|++|+||+..||||+|.- -+|.+..|.+|.|+-.++|+++||.++|++++++
T Consensus 172 ~---------------~~c~~~n~~ReY~~S~YWStLTlTTiGe~-P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmV 235 (536)
T KOG0500|consen 172 F---------------ATCDAGNLTREYLYSLYWSTLTLTTIGEQ-PPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMV 235 (536)
T ss_pred c---------------cccchhHHHHHHHHHHHHHhhhhhhccCC-CCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHH
Confidence 1 01123679999999999999999999975 4678889999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCcchHHHHHHHHHHHHhhcCccc
Q 044081 413 QSTSIRMEEWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRHLCLNLVRRVPLF 492 (707)
Q Consensus 413 ~~~~~~~~e~~~k~~~~~~~m~~r~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~lL~~vplF 492 (707)
.++++...||+.+++.+++||++|++|..|+.||.+||.|.|.+.+..||+++++.||+.|+.+|+.+++.+.|+++++|
T Consensus 236 tnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF 315 (536)
T KOG0500|consen 236 TNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIF 315 (536)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCC
Q 044081 493 HQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPR 572 (707)
Q Consensus 493 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~ 572 (707)
+...+.++.++...++++.|.|||+|+++||.+.+||+|.+|++++...+|+.. ...+++|++|||.++++- +
T Consensus 316 ~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIlni-~-- 388 (536)
T KOG0500|consen 316 QDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILNI-K-- 388 (536)
T ss_pred HhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEEE-c--
Confidence 999999999999999999999999999999999999999999999997666543 569999999999988732 2
Q ss_pred CCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHH
Q 044081 573 PTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQL 615 (707)
Q Consensus 573 ~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L 615 (707)
...++.+|+++|+++..+++++|+++|+.+.+++||+-...++
T Consensus 389 g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~ 431 (536)
T KOG0500|consen 389 GNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLE 431 (536)
T ss_pred CcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHH
Confidence 2236778999999999999999999999999999998654444
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-63 Score=527.74 Aligned_cols=462 Identities=19% Similarity=0.332 Sum_probs=384.0
Q ss_pred ccccceeECCCChhHHHHHHHHHHHHHHHHHHhhhhccccccccccceeecCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 044081 73 KVKKHIILYPNGKTIRLWSKIFLVACLVSVFLDPLFFYLPIVRREEMCIDNGVRTLETTLTIIRILADVFYVIQIFVCFR 152 (707)
Q Consensus 73 ~~~~~~ii~P~s~~~~~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~~f~~di~l~f~ 152 (707)
+.... ||-.++.|+..||++++++.+|+++++|+.++|-.- ......|.++++++|++|++||+++|+
T Consensus 204 KTpPH-IiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk-----------~~~~vs~lvvDSiVDVIF~vDIvLNFH 271 (971)
T KOG0501|consen 204 KTPPH-IILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNK-----------QRNNVSWLVVDSIVDVIFFVDIVLNFH 271 (971)
T ss_pred CCCCe-EEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccc-----------ccCceeEEEecchhhhhhhhhhhhhcc
Confidence 34445 899999999999999999999999999988654321 224567889999999999999999999
Q ss_pred eeEEcCCCcccCCCeEeeChHHHHHHhhhhchHHHHHHhCchhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhHHHh
Q 044081 153 TAYVAPSSRVFGRGEFVVEPSKIASRCLQRGFWLDFIAALPLPQVLIWVVVPNLEIPAVTMTVSILRILILFQYLPRVFL 232 (707)
Q Consensus 153 tay~~~~s~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~~~l~q~l~Rl~r 232 (707)
|.|+.|. ||+|.||+.|..+||++||+||++|+||++.+..+-- .+ ...-.....|+. .||+|
T Consensus 272 TTFVGPg------GEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~---~d-egI~SLFSaLKV-------VRLLR 334 (971)
T KOG0501|consen 272 TTFVGPG------GEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFER---DD-EGIGSLFSALKV-------VRLLR 334 (971)
T ss_pred eeeecCC------CceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhc---cc-ccHHHHHHHHHH-------HHHHH
Confidence 9999996 9999999999999999999999999999998865432 11 123333445554 46666
Q ss_pred hhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCCCCCcccc
Q 044081 233 IFPLTSKIVEATGVVTQKAWAAAAYNLLLYMLASHVSGACWYLLSVERQEACWRSACNLEKPLCELGFFDCRRLEDPQRI 312 (707)
Q Consensus 233 i~~l~~~i~~~~g~~~~~~~~~~~~~l~l~~l~~H~~gc~wyl~~~~~~~~cw~~~c~~~~~~c~~~~~~c~~~~~~~~~ 312 (707)
+-|+.+++.++..+-+ +..+..+..|+|+.||+||+||.+|-.+. +.. ..+.-..+
T Consensus 335 LGRVaRKLD~YlEYGA----A~LvLLlC~y~lvAHWlACiWysIGd~ev------------------~~~--~~n~i~~d 390 (971)
T KOG0501|consen 335 LGRVARKLDHYLEYGA----AVLVLLLCVYGLVAHWLACIWYSIGDYEV------------------RDE--MDNTIQPD 390 (971)
T ss_pred HHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHhheeccchhe------------------ecc--cccccccc
Confidence 6777777777765521 22334445699999999999999983211 000 11123456
Q ss_pred cccccccccccccCCCCCCCCCCcccccccchhhhhcc---CCCCchhhHHHHHHHHHHHHhcccCCcccccCchhHHHH
Q 044081 313 NWFKSSNVSNICQDGYNGPDINIGFYQFGIYTDAALNN---VTGSSILNKYFYCFWWGLRNLSSLGQNLATSTYIGEILF 389 (707)
Q Consensus 313 ~W~~~~~l~~~c~~~~~~~~~~~~~~~~g~~~~a~~~~---~~~~~~~~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f 389 (707)
+|+-.. ..+++++|+|. ++++ +.+.+--..|+.|+|+.++.|||||+|.+.|+|..|.+|
T Consensus 391 sWL~kL------------a~~~~tpY~~~-----~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF 453 (971)
T KOG0501|consen 391 SWLWKL------------ANDIGTPYNYN-----LSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIF 453 (971)
T ss_pred hHHHHH------------HhhcCCCceec-----cCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHH
Confidence 785322 23345677764 1111 124677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhC
Q 044081 390 TIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHEL 469 (707)
Q Consensus 390 ~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~r~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~L 469 (707)
++.+|++|.++||.++|+|.+++|.|++....|++.++.+.+||+-.++|++|.+||.+|.--.|..++|+|.+++|.-.
T Consensus 454 ~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~C 533 (971)
T KOG0501|consen 454 GVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYC 533 (971)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEE
Q 044081 470 PFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFF 549 (707)
Q Consensus 470 p~~Lr~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~ 549 (707)
|+++|.||..|+..+.....|.|+-.++..+++|+..++..+..||+.|+..|+.+|.+.||++|.+++...++-
T Consensus 534 PKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEV----- 608 (971)
T KOG0501|consen 534 PKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEV----- 608 (971)
T ss_pred ccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcE-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854432
Q ss_pred EeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHH
Q 044081 550 NSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRH 617 (707)
Q Consensus 550 ~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~ 617 (707)
+++++.||+||+...- -. ....+.++|+|+|.|.+..|.++.+.+++.-|..++...-++
T Consensus 609 -VAILGKGDVFGD~FWK--~~-----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRN 668 (971)
T KOG0501|consen 609 -VAILGKGDVFGDEFWK--EN-----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARN 668 (971)
T ss_pred -EEEeecCccchhHHhh--hh-----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhc
Confidence 7899999999998543 11 233567899999999999999999999999998887554443
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-56 Score=471.65 Aligned_cols=422 Identities=22% Similarity=0.387 Sum_probs=362.3
Q ss_pred eeECCCC-hhHHHHHHHHHHHHHHHHHHhhhhccccccccccceeecCCccchhhhHHHHHHHHHHHHHHHH-hhhceeE
Q 044081 78 IILYPNG-KTIRLWSKIFLVACLVSVFLDPLFFYLPIVRREEMCIDNGVRTLETTLTIIRILADVFYVIQIF-VCFRTAY 155 (707)
Q Consensus 78 ~ii~P~s-~~~~~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~~f~~di~-l~f~tay 155 (707)
..|||++ +++..|-.++.++-.++++++|+...||+.. .+....|.+.+++||++|++||+ ++=|.-|
T Consensus 218 ~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT----------~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 218 NSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQT----------ADNIHYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred cccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccc----------cccchhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 3799999 9999999999999999999999999999884 33456788999999999999998 5666777
Q ss_pred EcCCCcccCCCeEeeChHHHHHHhhhh-chHHHHHHhCchhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhHHHhhh
Q 044081 156 VAPSSRVFGRGEFVVEPSKIASRCLQR-GFWLDFIAALPLPQVLIWVVVPNLEIPAVTMTVSILRILILFQYLPRVFLIF 234 (707)
Q Consensus 156 ~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~~~l~q~l~Rl~ri~ 234 (707)
+.. |.+|.|.+...+||+++ .|-+|++|+||++++++++... ..+..+|+|++..|+-..-+|-+++
T Consensus 288 vrg-------G~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~-----p~wR~~R~lK~~sF~e~~~~Le~i~ 355 (815)
T KOG0499|consen 288 VRG-------GDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN-----PMWRANRMLKYTSFFEFNHHLESIM 355 (815)
T ss_pred eeC-------ceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc-----hhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 763 99999999999999999 9999999999999998765322 3455555555554443322222222
Q ss_pred hccchhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCCCCCccccc
Q 044081 235 PLTSKIVEATGVVTQKAWAAAAYNLLLYML-ASHVSGACWYLLSVERQEACWRSACNLEKPLCELGFFDCRRLEDPQRIN 313 (707)
Q Consensus 235 ~l~~~i~~~~g~~~~~~~~~~~~~l~l~~l-~~H~~gc~wyl~~~~~~~~cw~~~c~~~~~~c~~~~~~c~~~~~~~~~~ 313 (707)
.++++-++...+.||| ..|+.+|++|..|-. ...+.+-
T Consensus 356 --------------s~~y~~RV~rT~~YmlyilHinacvYY~~Say---------------------------qglG~~r 394 (815)
T KOG0499|consen 356 --------------SKAYIYRVIRTTGYLLYILHINACVYYWASAY---------------------------QGLGTTR 394 (815)
T ss_pred --------------cchhhhhhHHHHHHHHHHHhhhHHHHHHHHhh---------------------------cccccce
Confidence 2233334455556665 789999999998831 1245667
Q ss_pred ccccccccccccCCCCCCCCCCcccccccchhhhhccCCCCchhhHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHH
Q 044081 314 WFKSSNVSNICQDGYNGPDINIGFYQFGIYTDAALNNVTGSSILNKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVI 393 (707)
Q Consensus 314 W~~~~~l~~~c~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i 393 (707)
|+... -...|++|+|||..|++|+| |+-.|++..|++|..+-
T Consensus 395 WVydg-------------------------------------~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~ 436 (815)
T KOG0499|consen 395 WVYDG-------------------------------------EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLN 436 (815)
T ss_pred eEEcC-------------------------------------CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHH
Confidence 86321 13469999999999999999 67789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCcch
Q 044081 394 ATLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDL 473 (707)
Q Consensus 394 ~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~r~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~L 473 (707)
-+.|++.||.+||.|-.++...+.++++||..++++-.||+..+||.+.|.|||.+|+|.|..++..||.++|..||..|
T Consensus 437 w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~kl 516 (815)
T KOG0499|consen 437 WFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKL 516 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeee
Q 044081 474 RREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSR 553 (707)
Q Consensus 474 r~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~ 553 (707)
+.|++...+-..|.++.+|++++.+.+..+..+++.+.|-|||+|++.||.+.+||+|..|.|++....+|.. + +..
T Consensus 517 q~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~-V--l~t 593 (815)
T KOG0499|consen 517 QLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTK-V--LVT 593 (815)
T ss_pred eeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCE-E--EEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999986655543 3 679
Q ss_pred cCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHH
Q 044081 554 IGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRR 609 (707)
Q Consensus 554 l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~ 609 (707)
|++|++|||++|+ +.. .+.+|+++|+|...|.++.|+++|+.+++..||+
T Consensus 594 L~~GsVFGEISLL-aig-----G~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~ 643 (815)
T KOG0499|consen 594 LKAGSVFGEISLL-AIG-----GGNRRTANVVAHGFANLFVLDKKDLNEILVHYPD 643 (815)
T ss_pred ecccceeeeeeee-eec-----CCCccchhhhhcccceeeEecHhHHHHHHHhCcc
Confidence 9999999999887 222 3458899999999999999999999999999996
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.1e-23 Score=223.38 Aligned_cols=201 Identities=16% Similarity=0.225 Sum_probs=139.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhceeEEcCCCcccCCCeEeeChHHHHHHhhhh-chHHHHHHhCchhhhhhhhcccC
Q 044081 127 TLETTLTIIRILADVFYVIQIFVCFRTAYVAPSSRVFGRGEFVVEPSKIASRCLQR-GFWLDFIAALPLPQVLIWVVVPN 205 (707)
Q Consensus 127 ~~~~~~~~~~~~~d~~f~~di~l~f~tay~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lPl~~i~~~~~~~~ 205 (707)
.....+.+++.+|-++|.+++++||..+ .-..+++|+ -.+||++|++||.+=+.......
T Consensus 237 ~~~p~l~~vE~vCi~WFT~E~llR~~~~-------------------P~k~~F~k~pLNIIDllAIlPFYielll~~~~~ 297 (477)
T KOG3713|consen 237 EPHPILTYVETVCIAWFTFEYLLRFLVA-------------------PNKLEFFKSPLNIIDLLAILPFYLELLLTLFGG 297 (477)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHcC-------------------chHHHHHhCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 4457789999999999999999999987 567889998 89999999999854332221111
Q ss_pred CCchhh-HHHHHHHHHHHHHhhhhHHHhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 044081 206 LEIPAV-TMTVSILRILILFQYLPRVFLIFPLTSKIVEATGVVTQKAWAAAAYNLLLYML-----ASHVSGACWYLLSVE 279 (707)
Q Consensus 206 ~~~~~~-~~~~~~Lr~~~l~q~l~Rl~ri~~l~~~i~~~~g~~~~~~~~~~~~~l~l~~l-----~~H~~gc~wyl~~~~ 279 (707)
.+... -+...++|++|+ .|++||++|.+ +.+|.-+-....++.++-+..++ .+-+++.+-|++-
T Consensus 298 -~~~~~l~~~~~vvrvlR~----lRI~RI~KLaR---hS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~E-- 367 (477)
T KOG3713|consen 298 -ESLKELENAGLVVRVLRV----LRILRIFKLAR---HSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAE-- 367 (477)
T ss_pred -chHHHHhhhhhhHHHHHH----HHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 11111 112234444333 57777777766 77887655556666665433222 4555666666542
Q ss_pred HHHHHHHhhhccCCCCCcccccccCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhhccCCCCchhhH
Q 044081 280 RQEACWRSACNLEKPLCELGFFDCRRLEDPQRINWFKSSNVSNICQDGYNGPDINIGFYQFGIYTDAALNNVTGSSILNK 359 (707)
Q Consensus 280 ~~~~cw~~~c~~~~~~c~~~~~~c~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 359 (707)
...++.+ +..
T Consensus 368 ------------------------k~~~~~~----------------------------------------------FtS 377 (477)
T KOG3713|consen 368 ------------------------KDEPDTK----------------------------------------------FTS 377 (477)
T ss_pred ------------------------hcCCCCC----------------------------------------------Ccc
Confidence 1111011 011
Q ss_pred HHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKR 426 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~ 426 (707)
--.|+|||+.|||||||||++|.|..+++++..++++|+++.|+.|..|.+.+...+...++.+...
T Consensus 378 IPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~ 444 (477)
T KOG3713|consen 378 IPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAP 444 (477)
T ss_pred ccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhh
Confidence 1146999999999999999999999999999999999999999999999999988777665544433
No 7
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.9e-16 Score=161.92 Aligned_cols=203 Identities=19% Similarity=0.284 Sum_probs=128.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhceeEEcCCCcccCCCeEeeChHHHHHHhhhh-chHHHHHHhCchhhhhhhhcccC
Q 044081 127 TLETTLTIIRILADVFYVIQIFVCFRTAYVAPSSRVFGRGEFVVEPSKIASRCLQR-GFWLDFIAALPLPQVLIWVVVPN 205 (707)
Q Consensus 127 ~~~~~~~~~~~~~d~~f~~di~l~f~tay~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lPl~~i~~~~~~~~ 205 (707)
.....+.+++++|-+||.+++++||..+ |+ ..-+.++ ..+||++|++|+-.-...-....
T Consensus 250 ~f~dPFFiVEt~CIiWFtfEllvRf~aC---Ps----------------K~~Ff~nimNiIDiVaI~PyFitlgtela~q 310 (507)
T KOG1545|consen 250 KFTDPFFIVETLCIIWFTFELLVRFFAC---PS----------------KATFFRNIMNIIDIVAIIPYFITLGTELAEQ 310 (507)
T ss_pred ccCCchHhHHHHHHHHHhHHHHHHHhcC---cc----------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 3456789999999999999999999877 32 3345555 67999999999843222111111
Q ss_pred CCc---hhhHHHHHHHHHHHHHhhhhHHHhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044081 206 LEI---PAVTMTVSILRILILFQYLPRVFLIFPLTSKIVEATGVVTQKAWAAAAYNLLLYMLASHVSGACWYLLSVERQE 282 (707)
Q Consensus 206 ~~~---~~~~~~~~~Lr~~~l~q~l~Rl~ri~~l~~~i~~~~g~~~~~~~~~~~~~l~l~~l~~H~~gc~wyl~~~~~~~ 282 (707)
..+ .......-+||++|| .|++||++|.+ ++.|+-......++...-+..++..-.+|-+.|-.++
T Consensus 311 ~g~g~~gqqaMSlAILRViRL----VRVFRIFKLSR---HSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSav---- 379 (507)
T KOG1545|consen 311 QGGGGQGQQAMSLAILRVIRL----VRVFRIFKLSR---HSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAV---- 379 (507)
T ss_pred hcCCccchhhhhHHHHHHHHH----HHHhhheeecc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcee----
Confidence 111 122223456666655 57788888776 4444422222233332222222222223444444332
Q ss_pred HHHHhhhccCCCCCcccccccCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhhccCCCCchhhHHHH
Q 044081 283 ACWRSACNLEKPLCELGFFDCRRLEDPQRINWFKSSNVSNICQDGYNGPDINIGFYQFGIYTDAALNNVTGSSILNKYFY 362 (707)
Q Consensus 283 ~cw~~~c~~~~~~c~~~~~~c~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~Y~~ 362 (707)
|+++....+....+ .| .
T Consensus 380 -----------------YFAEade~~S~F~S----------------IP------------------------------d 396 (507)
T KOG1545|consen 380 -----------------YFAEADEPESHFSS----------------IP------------------------------D 396 (507)
T ss_pred -----------------eeeecCCCccCCCc----------------Cc------------------------------c
Confidence 44433211111111 22 3
Q ss_pred HHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q 044081 363 CFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEW 422 (707)
Q Consensus 363 slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~ 422 (707)
+|||+++|||||||||+.|.|.+.+++..+++|.|++..|+.+..+.+.+.-.+.+..|-
T Consensus 397 aFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte~ 456 (507)
T KOG1545|consen 397 AFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEG 456 (507)
T ss_pred cceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccceeeccccc
Confidence 599999999999999999999999999999999999999999998888887666655443
No 8
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.62 E-value=9.2e-15 Score=150.15 Aligned_cols=131 Identities=14% Similarity=0.133 Sum_probs=115.4
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
.+.++.+|+|+.++++.++.++...+.+.|++|+.|+++||+++++|+|.+|.++++...+|++.. +..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 467889999999999999999999999999999999999999999999999999998776666655 789999999999
Q ss_pred hhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhh
Q 044081 563 ELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSH 624 (707)
Q Consensus 563 ~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~ 624 (707)
.+++ ...++..+++|+++|+++.+++++|.+++.++|.+....++...+.+..
T Consensus 84 ~~~~---------~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~ 136 (236)
T PRK09392 84 AAVV---------LDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRG 136 (236)
T ss_pred HHHh---------CCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 9877 2335789999999999999999999999999999987776655543333
No 9
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.48 E-value=2.3e-12 Score=129.82 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=100.9
Q ss_pred cCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhhccCC
Q 044081 493 HQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTWALDP 571 (707)
Q Consensus 493 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~ 571 (707)
+.++++.++.++..++.+.|++|++|+.+||+++.+|+|++|.++++..+ +|++.. +..+++|++||+..++ .
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~---~- 79 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---E- 79 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhc---c-
Confidence 46899999999999999999999999999999999999999999998764 455544 6799999999999776 1
Q ss_pred CCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 572 RPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 572 ~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
..+++..+++|.++|+++.+++++|.+++.++|++....++....
T Consensus 80 ----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 124 (211)
T PRK11753 80 ----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMAR 124 (211)
T ss_pred ----CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 123467899999999999999999999999999987655544433
No 10
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.43 E-value=2.6e-12 Score=131.82 Aligned_cols=123 Identities=18% Similarity=0.241 Sum_probs=100.8
Q ss_pred hhcCccccCCCHHHHHHHHhcCE-EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehh
Q 044081 486 VRRVPLFHQMDETILDVICERLK-PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEE 563 (707)
Q Consensus 486 L~~vplF~~ls~~~l~~L~~~l~-~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~ 563 (707)
+++.+.|..+++++++.|..... .+.|++|+.|+++||+++++|+|.+|.|+++..+ +|++.+ +..+.||++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 45555556799999999998886 4679999999999999999999999999998865 455555 6788999999987
Q ss_pred hhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 564 LLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 564 ~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
.+. + ..+..+++|+++|+++.+++++|.+++.++|.+....++....
T Consensus 93 ~~~---~-------~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~ 139 (235)
T PRK11161 93 AIG---S-------GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSG 139 (235)
T ss_pred ccc---C-------CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHH
Confidence 654 1 1234689999999999999999999999999987666554443
No 11
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.43 E-value=2.6e-12 Score=114.65 Aligned_cols=112 Identities=23% Similarity=0.448 Sum_probs=98.4
Q ss_pred cccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCC-eeeEEEeeecCCCCeeehhhhhhcc
Q 044081 491 LFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGG-HFGFFNSSRIGPGDFCGEELLTWAL 569 (707)
Q Consensus 491 lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g-~~~~~~~~~l~~Gd~fGe~~l~~~l 569 (707)
+|..++++.++.+++.++...+.+|++|+.+|++.+++|+|.+|.++++..+.+ ++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 478899999999999999999999999999999999999999999999776543 4444 6799999999999776
Q ss_pred CCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHH
Q 044081 570 DPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSK 613 (707)
Q Consensus 570 d~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k 613 (707)
...++..+++|.++|+++.|+.++|.+++.++|.+..+
T Consensus 76 ------~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 76 ------GNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred ------cCCCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 23356899999999999999999999999999987543
No 12
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.41 E-value=1.5e-12 Score=128.74 Aligned_cols=193 Identities=19% Similarity=0.340 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHhhhceeEEcCCCcccCCCeEeeChHHHHHHhhhh-chHHHHHHhCchhhhhhhhcccCCCchhhH
Q 044081 134 IIRILADVFYVIQIFVCFRTAYVAPSSRVFGRGEFVVEPSKIASRCLQR-GFWLDFIAALPLPQVLIWVVVPNLEIPAVT 212 (707)
Q Consensus 134 ~~~~~~d~~f~~di~l~f~tay~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~ 212 (707)
+++.+++++|++|+++++.+... . +++|+++ |+++|+++++|....+.....+.. +.
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-----------~-------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~- 58 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-----------K-------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSA---SA- 58 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-----------G--------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS-----HH-
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-----------H-------HHHHhcChhhcccccccccccccccccccccc---cc-
Confidence 46899999999999999998722 1 6789998 888999999998655443222111 00
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 044081 213 MTVSILRILILFQYLPRVFLIFPLTSKIVEATGVVTQKAWAAAAYNLLLYMLASHVSGACWYLLSVERQEACWRSACNLE 292 (707)
Q Consensus 213 ~~~~~Lr~~~l~q~l~Rl~ri~~l~~~i~~~~g~~~~~~~~~~~~~l~l~~l~~H~~gc~wyl~~~~~~~~cw~~~c~~~ 292 (707)
...+++.++++ +.|++|+.+..+.+.+..+.+. .........+++++++.|+.||+++.+.-.....|+
T Consensus 59 --~~~~~~~~~l~-~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~------- 127 (200)
T PF00520_consen 59 --QSLLRIFRLLR-LLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCC------- 127 (200)
T ss_dssp --CHCHHHHHHHH-HHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------
T ss_pred --cceEEEEEeec-cccccccccccccccccccccc-cccccccccccccccccccccchhheeccccccccc-------
Confidence 11222222222 1355555555554444433332 112223333455667899999999988622111000
Q ss_pred CCCCcccccccCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhhccCCCCchhhHHHHHHHHHHHHhc
Q 044081 293 KPLCELGFFDCRRLEDPQRINWFKSSNVSNICQDGYNGPDINIGFYQFGIYTDAALNNVTGSSILNKYFYCFWWGLRNLS 372 (707)
Q Consensus 293 ~~~c~~~~~~c~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~Y~~slyW~l~tls 372 (707)
+. . +. +. ++....+..+.|..|+||.++++|
T Consensus 128 ----~~------------~--~~---------------~~----------------~~~~~~~~f~~~~~s~~~~~~~~t 158 (200)
T PF00520_consen 128 ----DP------------T--WD---------------SE----------------NDIYGYENFDSFGESLYWLFQTMT 158 (200)
T ss_dssp ---------------------SS-----------------------------------SSTHHHHSSHHHHHHHHHHHHT
T ss_pred ----cc------------c--cc---------------cc----------------cccccccccccccccccccccccc
Confidence 00 0 00 00 011234556789999999999999
Q ss_pred ccCCcccccC-----chhHHHHH-HHHHHHHHHHHHHHHHHH
Q 044081 373 SLGQNLATST-----YIGEILFT-IVIATLGLVLFSLLIGNM 408 (707)
Q Consensus 373 tvG~gd~~~~-----~~~E~~f~-i~i~i~G~~lfa~lIg~~ 408 (707)
+.|+|+..+. +..+.++. +++.+.+.++++++||+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 159 GEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 9999999887 88999998 777888889999999986
No 13
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.39 E-value=4.3e-12 Score=129.62 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=91.8
Q ss_pred HHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCC
Q 044081 501 DVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPS 579 (707)
Q Consensus 501 ~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~ 579 (707)
.++....+.+.|++|++|+++||+++++|+|.+|.|+++..+ +|++.+ +..+.||++||+.+++ ...+
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~---------~~~~ 93 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI---------DKDH 93 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh---------cCCC
Confidence 356777888999999999999999999999999999998764 455554 6799999999999876 2345
Q ss_pred cceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHH
Q 044081 580 STRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKF 619 (707)
Q Consensus 580 ~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~ 619 (707)
++.+++|+++|+++.+++++|..++.++|.+....++...
T Consensus 94 ~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~ 133 (226)
T PRK10402 94 ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLS 133 (226)
T ss_pred CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7899999999999999999999999999988766555444
No 14
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.37 E-value=6.3e-12 Score=108.17 Aligned_cols=90 Identities=27% Similarity=0.321 Sum_probs=79.5
Q ss_pred EEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcce
Q 044081 510 VLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITE 589 (707)
Q Consensus 510 ~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~ 589 (707)
+.|++|++|+++|++++++|||++|.++++..+.++... .+..+.+|++||+.+++ ...++..+++|.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~---------~~~~~~~~~~a~~~ 71 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ-IIFFLGPGDIFGEIELL---------TGKPSPFTVIALTD 71 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE-EEEEEETTEEESGHHHH---------HTSBBSSEEEESSS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee-eecceeeeccccceeec---------CCCccEEEEEEccC
Confidence 689999999999999999999999999998876655443 26799999999999887 22367899999999
Q ss_pred EEEEEecHHHHHHHHHHcHH
Q 044081 590 VEAFTLTAEDLTFVASQFRR 609 (707)
Q Consensus 590 ~~ll~L~~~df~~ll~~~p~ 609 (707)
|+++.|++++|.++++++|+
T Consensus 72 ~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 72 SEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEEEEEEHHHHHHHHHHSHH
T ss_pred EEEEEEeHHHHHHHHHhCcC
Confidence 99999999999999999995
No 15
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.34 E-value=2.7e-11 Score=108.50 Aligned_cols=116 Identities=22% Similarity=0.352 Sum_probs=98.8
Q ss_pred cccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCC-eeeEEEeeecCCCCeeehhhhhhcc
Q 044081 491 LFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGG-HFGFFNSSRIGPGDFCGEELLTWAL 569 (707)
Q Consensus 491 lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g-~~~~~~~~~l~~Gd~fGe~~l~~~l 569 (707)
+|.+++++.++.++..++.+.+++|++|+++||+.+++|+|.+|.++++..+.+ ++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALL--- 75 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhc---
Confidence 478899999999999999999999999999999999999999999999876433 3333 6899999999999765
Q ss_pred CCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHH
Q 044081 570 DPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQL 615 (707)
Q Consensus 570 d~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L 615 (707)
.. ...+...+++|.++|+++.++.+++......+|.+..+.+
T Consensus 76 ~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 76 TN----SRRAASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred cC----CCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 11 1224678999999999999999999999999998755544
No 16
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.33 E-value=7.2e-11 Score=118.14 Aligned_cols=127 Identities=24% Similarity=0.360 Sum_probs=105.8
Q ss_pred hcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecC-CeeeEEEeeecCCCCeeehhhh
Q 044081 487 RRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNG-GHFGFFNSSRIGPGDFCGEELL 565 (707)
Q Consensus 487 ~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fGe~~l 565 (707)
...+.|..++++....+......+.+++|++|+++||+++.+|+|.+|.++++.... |++.+ +..++|||+||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 345677777888888888889999999999999999999999999999999987654 45555 679999999999988
Q ss_pred hhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhh
Q 044081 566 TWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSH 624 (707)
Q Consensus 566 ~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~ 624 (707)
+ ...+++.+++|+++|+++.+++++|..++.+.|.+....++...+...+
T Consensus 81 ~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~ 130 (214)
T COG0664 81 L---------GGDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQ 130 (214)
T ss_pred h---------cCCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 7 2225789999999999999999999999888888877666655553333
No 17
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.9e-13 Score=140.97 Aligned_cols=183 Identities=13% Similarity=0.224 Sum_probs=117.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhceeEEcCCCcccCCCeEeeChHHHHHHhhhh-chHHHHHHhCchhhhhhhhcccC
Q 044081 127 TLETTLTIIRILADVFYVIQIFVCFRTAYVAPSSRVFGRGEFVVEPSKIASRCLQR-GFWLDFIAALPLPQVLIWVVVPN 205 (707)
Q Consensus 127 ~~~~~~~~~~~~~d~~f~~di~l~f~tay~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lPl~~i~~~~~~~~ 205 (707)
.....+..+++.|-++|..+.++++..| .-..|++|+ .=+||++|++|+. +-+++++
T Consensus 224 ry~~aFFclDTACVmIFT~EYlLRL~aA-------------------PsR~rF~RSvMSiIDVvAIlPYY---igLv~t~ 281 (632)
T KOG4390|consen 224 RYPVAFFCLDTACVMIFTGEYLLRLFAA-------------------PSRYRFLRSVMSIIDVVAILPYY---IGLVMTD 281 (632)
T ss_pred ccceeeEEecceeEEEeeHHHHHHHHcC-------------------chHHHHHHHHHHHHHHhhhhhhh---eEEEecC
Confidence 4467788999999999999999999887 456689999 7799999999983 3344444
Q ss_pred C-CchhhHHHHHHHHHHHHHhhhhHHHhhhhccchhhhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044081 206 L-EIPAVTMTVSILRILILFQYLPRVFLIFPLTSKIVEATGVV-----TQKAWAAAAYNLLLYMLASHVSGACWYLLSVE 279 (707)
Q Consensus 206 ~-~~~~~~~~~~~Lr~~~l~q~l~Rl~ri~~l~~~i~~~~g~~-----~~~~~~~~~~~l~l~~l~~H~~gc~wyl~~~~ 279 (707)
. +-+..+.+.++ +|+|++++.-.+..|+- .++--.-.-+.++-...++-+++.++|+.-
T Consensus 282 N~DVSGaFVTLRV-------------FRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAE-- 346 (632)
T KOG4390|consen 282 NEDVSGAFVTLRV-------------FRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAE-- 346 (632)
T ss_pred CccccceeEEEEe-------------eeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh--
Confidence 3 33444444333 33333333222333331 111000011222222234555565555532
Q ss_pred HHHHHHHhhhccCCCCCcccccccCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhhccCCCCchhhH
Q 044081 280 RQEACWRSACNLEKPLCELGFFDCRRLEDPQRINWFKSSNVSNICQDGYNGPDINIGFYQFGIYTDAALNNVTGSSILNK 359 (707)
Q Consensus 280 ~~~~cw~~~c~~~~~~c~~~~~~c~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 359 (707)
.. .. .+-+..
T Consensus 347 ------------------------Kg----~~------------------------------------------at~FTs 356 (632)
T KOG4390|consen 347 ------------------------KG----SS------------------------------------------ATKFTS 356 (632)
T ss_pred ------------------------cc----cc------------------------------------------cccccc
Confidence 00 00 000111
Q ss_pred HHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTS 416 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~ 416 (707)
--.+||+.++||||+||||+.|.|+.+.+|..++.+.|+++.|+.+..+.+.++...
T Consensus 357 IPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 357 IPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred CcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 125799999999999999999999999999999999999999998887777776554
No 18
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.27 E-value=5.7e-11 Score=121.67 Aligned_cols=165 Identities=15% Similarity=0.023 Sum_probs=112.0
Q ss_pred HHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCc
Q 044081 502 VICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSS 580 (707)
Q Consensus 502 ~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~ 580 (707)
+++.....+.|++|++|+.+||+++++|+|++|.|+++..+ +|++.+ +..+.+|++||+.. ..++
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~------------~~~~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES------------GSTH 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC------------CCcC
Confidence 45566788999999999999999999999999999998764 444444 67889999999641 1245
Q ss_pred ceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhhhhHHhhhcCCCCC---
Q 044081 581 TRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRTWAACFIQAAWRRHKNLKETAKLKSGSEPG--- 657 (707)
Q Consensus 581 ~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~~~~~~iq~a~r~~~~r~~~~~~~~~e~~~--- 657 (707)
..+++|+++|+++.+++++|..++.++|++....++...+...+.-+... ..+...-..|-....++..+...
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~----~l~~~~~~~Rla~~Ll~l~~~~g~~~ 174 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHML----LLGRKTAMERVAAFLLEMDERLGGAG 174 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 78999999999999999999999999999987777665553332211111 11111112222222222211111
Q ss_pred ----CCCCCCchhhHhhhhHH-HHhhcccccc
Q 044081 658 ----QPSGTGSFWDHYAESLI-ARTSSGSFKQ 684 (707)
Q Consensus 658 ----~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 684 (707)
..++.+++..+|.+|-. .++++.+++.
T Consensus 175 ~i~i~lt~~~IA~~lGisretlsR~L~~L~~~ 206 (230)
T PRK09391 175 MMALPMSRRDIADYLGLTIETVSRALSQLQDR 206 (230)
T ss_pred EEEecCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 12346888888888774 4556665443
No 19
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.24 E-value=1.2e-10 Score=115.58 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=80.5
Q ss_pred CcEEEccCCCcCeEEEEEeeEEEEEEecC-CeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEE
Q 044081 515 GIFLVREGDPVQQMLFIVRGQLDSYTTNG-GHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAF 593 (707)
Q Consensus 515 ge~I~~eGd~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll 593 (707)
|+.|+++||+.+++|+|.+|.|+++..++ |++.+ +..++||++||+.+++ +..+ .++..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~---~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI---TGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec---cCCC----CccceEEEEecceEEE
Confidence 78999999999999999999999987644 45544 7899999999998776 2111 1245789999999999
Q ss_pred EecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 594 TLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 594 ~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
.+++++|.+++.++|++....++...+
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~ 98 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSS 98 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999999999999998777766554
No 20
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.20 E-value=1.1e-10 Score=126.17 Aligned_cols=89 Identities=18% Similarity=0.352 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhC
Q 044081 357 LNKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDTEQWMHHR 436 (707)
Q Consensus 357 ~~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~r 436 (707)
+.-|-.++|||+.||||+||||.+|.|...++.+.+..++|+.+||+.-|.+++=+.-.- +++.| -++|-+.|
T Consensus 267 F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV--Qeq~R-----QKHf~rrr 339 (654)
T KOG1419|consen 267 FPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV--QEQHR-----QKHFNRRR 339 (654)
T ss_pred chhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh--HHHHH-----HHHHHhhc
Confidence 567888999999999999999999999999999999999999999999999888774332 22222 24677888
Q ss_pred CCCHHHHHHHHHHHHH
Q 044081 437 QLPPELRHSVRKFDQY 452 (707)
Q Consensus 437 ~lp~~L~~rVr~y~~y 452 (707)
+.-.+|.+-..|||.-
T Consensus 340 ~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 340 NPAASLIQCAWRYYAA 355 (654)
T ss_pred chHHHHHHHHHHHHhc
Confidence 8889999999888763
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.20 E-value=2.1e-11 Score=131.05 Aligned_cols=127 Identities=24% Similarity=0.384 Sum_probs=111.2
Q ss_pred HHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCe
Q 044081 480 HLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDF 559 (707)
Q Consensus 480 ~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~ 559 (707)
.-+.++|+.+|+|.+++++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+.+.++..-+..++.||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34678899999999999999999999999999999999999999999999999999999887666444333789999999
Q ss_pred eehhhhhhccCCCCCCCCCCcceEEEEcce-EEEEEecHHHHHHHHHHcHHHHHHHH
Q 044081 560 CGEELLTWALDPRPTVILPSSTRSVKAITE-VEAFTLTAEDLTFVASQFRRLHSKQL 615 (707)
Q Consensus 560 fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~-~~ll~L~~~df~~ll~~~p~l~~k~L 615 (707)
|||-+|+ +...|++++.|..+ ++++.|+++.|..++....++..+..
T Consensus 348 FGE~al~---------~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~ 395 (732)
T KOG0614|consen 348 FGERALL---------GEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDY 395 (732)
T ss_pred hhHHHhh---------ccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhc
Confidence 9999998 34467899999987 99999999999999988887765443
No 22
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.19 E-value=4.6e-10 Score=112.32 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=103.3
Q ss_pred cCEEEEecCCcEEEccCC--CcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcce
Q 044081 506 RLKPVLGTKGIFLVREGD--PVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTR 582 (707)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd--~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~ 582 (707)
.++...|++|++|+++|| +++++|+|++|.|+++..+ +|++.+ +..+.|||+||+..+. ..+++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~----------~~~~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA----------GAERAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc----------CCCCCc
Confidence 467889999999999999 7799999999999998764 455555 7899999999997554 124578
Q ss_pred EEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhhhhHHhhhcCC-------C
Q 044081 583 SVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRTWAACFIQAAWRRHKNLKETAKLKSGS-------E 655 (707)
Q Consensus 583 tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~~~~~~iq~a~r~~~~r~~~~~~~~~e-------~ 655 (707)
+++|+++|+++.|++++| +|.+....++...+..++..+...... ...-..|.....++..+ .
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~~~~~~l~----~~~~~~Rla~~Ll~l~~~~~~~~~~ 142 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARAYESIYRLV----GQRLKNRIAAALLELSDTPLATQED 142 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHHHHHHHHH----hCchHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999987 466666666665554444433333222 22222333332222111 1
Q ss_pred CC----CCCCCCchhhHhhhhHHH-Hhhcccc
Q 044081 656 PG----QPSGTGSFWDHYAESLIA-RTSSGSF 682 (707)
Q Consensus 656 ~~----~~~~~~~~~~~~~~~~~~-~~~~~~~ 682 (707)
.. ..++.+++..+|.+|-.. ++++.++
T Consensus 143 ~~~~~~~~t~~~iA~~lG~tretvsR~l~~l~ 174 (202)
T PRK13918 143 SGETMIYATHDELAAAVGSVRETVTKVIGELS 174 (202)
T ss_pred CCeEEecCCHHHHHHHhCccHHHHHHHHHHHH
Confidence 10 123467888888888743 4455543
No 23
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.18 E-value=1.6e-10 Score=128.51 Aligned_cols=113 Identities=21% Similarity=0.319 Sum_probs=98.8
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
.+.++++++|++++++.++.++..++.+.|++|++|+++||+++.+|+|++|.|+++..+++++.. +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 456789999999999999999999999999999999999999999999999999998876554443 678999999997
Q ss_pred hhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcH
Q 044081 563 ELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFR 608 (707)
Q Consensus 563 ~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p 608 (707)
. + . ..++..+++|.++|+++.|++++|..+...++
T Consensus 85 ~--l---~------~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G--L---S------GSVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h--h---C------CCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 5 3 1 23568999999999999999999998876665
No 24
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.14 E-value=5.8e-10 Score=121.93 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=104.2
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
.+++.+.|.|+.++++.+++|...++...|.+||.|+..|.|.+++|+|.+|.|++...+|. + +..+..||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~---v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE---V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe---e--eeeeccCccccc
Confidence 56788999999999999999999999999999999999999999999999999999865543 2 789999999999
Q ss_pred hhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHH
Q 044081 563 ELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQL 615 (707)
Q Consensus 563 ~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L 615 (707)
.+++ +.. .......|.+++-++.|+++.|.+++.++|+++.-..
T Consensus 81 ~~l~---~~~------~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~ 124 (610)
T COG2905 81 SSLF---TEL------NKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFL 124 (610)
T ss_pred hhhc---ccC------CCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHH
Confidence 9887 211 2356788888999999999999999999999874333
No 25
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.14 E-value=1e-10 Score=121.05 Aligned_cols=144 Identities=18% Similarity=0.224 Sum_probs=116.2
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
.+.+++.-+|++++++.+..+.+.+..+.+++|+.|+.+||.++.+|+|.+|.++++.. +.. +..+.||..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~-~~~-----v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN-GTY-----VTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC-CeE-----EeeeCCCCchhh
Confidence 45677888999999999999999999999999999999999999999999999999865 221 679999999999
Q ss_pred hhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Q 044081 563 ELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRTWAACFIQAAWRRHK 642 (707)
Q Consensus 563 ~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~~~~~~iq~a~r~~~ 642 (707)
.+++ -.+|+.+|+.|.+++.+|.|++..|..++-.+.....++....++ ...++..+..+.
T Consensus 195 lALm---------yn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~----------s~pil~~l~k~e 255 (368)
T KOG1113|consen 195 LALM---------YNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLE----------SVPILESLEKLE 255 (368)
T ss_pred hHhh---------hCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhh----------cchhhHHHHHHH
Confidence 9998 356789999999999999999999999987776555555554443 223344444555
Q ss_pred hhhhHHhhh
Q 044081 643 NLKETAKLK 651 (707)
Q Consensus 643 ~r~~~~~~~ 651 (707)
+-+....+.
T Consensus 256 r~kv~dal~ 264 (368)
T KOG1113|consen 256 RAKVADALG 264 (368)
T ss_pred HHhhhcccc
Confidence 555554443
No 26
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.12 E-value=8e-11 Score=126.66 Aligned_cols=128 Identities=20% Similarity=0.388 Sum_probs=108.4
Q ss_pred HHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCC
Q 044081 478 KRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPG 557 (707)
Q Consensus 478 ~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~G 557 (707)
..++..+.+.+-.+++++++..+.++...|.+..|.+|++|++|||++.++|++.+|++++... |+ . ++.+++|
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~--g~--l--l~~m~~g 221 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE--GK--L--LGKMGAG 221 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC--Ce--e--eeccCCc
Confidence 4556677788889999999999999999999999999999999999999999999999999742 32 2 7899999
Q ss_pred CeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 558 DFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 558 d~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
..|||.++++.+ +|+++|+|+++|.+|+|+++.|+.++...-.-......+.+|
T Consensus 222 tvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLr 275 (732)
T KOG0614|consen 222 TVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLR 275 (732)
T ss_pred hhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988543 689999999999999999999999998776544333333333
No 27
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.89 E-value=1.5e-08 Score=85.66 Aligned_cols=55 Identities=16% Similarity=0.420 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044081 359 KYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQ 413 (707)
Q Consensus 359 ~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~ 413 (707)
.|..++||++.++||+||||+.|.+..+++++++.+++|+.++++.++++.+.++
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999875
No 28
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=1.1e-08 Score=106.29 Aligned_cols=118 Identities=17% Similarity=0.277 Sum_probs=104.3
Q ss_pred HHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCC
Q 044081 478 KRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPG 557 (707)
Q Consensus 478 ~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~G 557 (707)
++.++.++|+++|+++.++......+++.+.++.|.+|+.|+.+|++++.+|+|.+|.|.+....+| + .+ .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~---v-~v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG---V-EV-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC---e-EE-Eechh
Confidence 4567899999999999999999999999999999999999999999999999999999998755433 2 24 99999
Q ss_pred CeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHH
Q 044081 558 DFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRR 609 (707)
Q Consensus 558 d~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~ 609 (707)
|+|||.+++ ...++.++|.|.++..+..++++.|+.++.--.+
T Consensus 309 dyfge~al~---------~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 309 DYFGELALL---------KNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred hhcchHHHH---------hhchhhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 999999888 3346789999999999999999999999876544
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.61 E-value=4.2e-08 Score=106.27 Aligned_cols=137 Identities=20% Similarity=0.253 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCC
Q 044081 358 NKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDTEQWMHHRQ 437 (707)
Q Consensus 358 ~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~r~ 437 (707)
-.|..|+|+-++|||||||||+..+|..+++|.++.++.|+.+||--+..+..++.+-.+-.-||...-- -+|--
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg-----kkhiv 361 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG-----KKHIV 361 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC-----CeeEE
Confidence 4588999999999999999999999999999999999999999999999999999876554444332100 00000
Q ss_pred C-CHHHHHHHHHHHHHHHHHhc-CCC-HHHHHhhCCcchHHHHHHHHHHHHhhcCccccC--CCHHHHHH
Q 044081 438 L-PPELRHSVRKFDQYKWVATR-GVD-EEAILHELPFDLRREIKRHLCLNLVRRVPLFHQ--MDETILDV 502 (707)
Q Consensus 438 l-p~~L~~rVr~y~~y~w~~~~-~~~-e~~ll~~Lp~~Lr~~i~~~l~~~lL~~vplF~~--ls~~~l~~ 502 (707)
+ -.-.-+.|-.|++---.+.| .+| |-.+|...||+|.-+ .+++.-..++.+|++ |++..+..
T Consensus 362 vcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 362 VCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred EecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhhh
Confidence 0 01112334444443333333 355 345778899988655 344455677888885 66665544
No 30
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.26 E-value=6.1e-07 Score=74.46 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=55.3
Q ss_pred hhcccccCCCCCchhhhcchhhhccccccccccccccccccccccccceeECCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 044081 30 QRGEMVQMPKPQSSKKASEASIENKGKSLKAKVRGRVFSEDYEKVKKHIILYPNGKTIRLWSKIFLVACLVSVFLDPLFF 109 (707)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~s~~~~~W~~~~li~~~~~~~~~Pl~~ 109 (707)
|+++.++|+.++.+.+.-++..+..++. +...+. ..+||||.|.|+.+||.+++++.+++++++|+.+
T Consensus 1 ~~~~~~~p~~nk~sl~~f~S~~ai~~E~-----------~R~~~~-~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~i 68 (77)
T PF08412_consen 1 QFSSLLQPGDNKFSLRVFGSKKAIEKEK-----------ERQRSS-GPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRI 68 (77)
T ss_pred CcHHhhccccCHHHHHHHccHHHHHHHH-----------HHHhcC-CCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567889999999988877777765552 222222 3449999999999999999999999999999886
Q ss_pred cc
Q 044081 110 YL 111 (707)
Q Consensus 110 ~~ 111 (707)
+|
T Consensus 69 sF 70 (77)
T PF08412_consen 69 SF 70 (77)
T ss_pred eE
Confidence 54
No 31
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.20 E-value=1.9e-06 Score=98.42 Aligned_cols=114 Identities=19% Similarity=0.271 Sum_probs=96.2
Q ss_pred HHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecC-CeeeEEEeeecCCCCeeehhhhhhccCCCCCCC
Q 044081 498 TILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNG-GHFGFFNSSRIGPGDFCGEELLTWALDPRPTVI 576 (707)
Q Consensus 498 ~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~ 576 (707)
.++..+-..+....+.+|+.++++||..+++|+|++|+++.....+ |+..+ +..++.||.+|+...+ .
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~l---------t 567 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEML---------T 567 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHHh---------h
Confidence 3555666677889999999999999999999999999999876644 44445 6799999999999776 3
Q ss_pred CCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHh
Q 044081 577 LPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHH 622 (707)
Q Consensus 577 ~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~ 622 (707)
..+|..|+.|+.++++..||..-|..+..+||.+..+..+..++.+
T Consensus 568 ~~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 568 KQPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred cCCccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4467899999999999999999999999999998877776666655
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.96 E-value=0.001 Score=72.03 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhC
Q 044081 357 LNKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDTEQWMHHR 436 (707)
Q Consensus 357 ~~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~r 436 (707)
...|+.++|.-..|.-++||||+.|.|.-++..+++..++|.++-|.+|..++--+.- ..--+.+++||-..
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLeL--------t~aEKhVhNFMmDt 356 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLEL--------TKAEKHVHNFMMDT 356 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 3458889999999999999999999999999999999999999999999988766633 23334567777777
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 044081 437 QLPPELRHSVRKFDQYKWV 455 (707)
Q Consensus 437 ~lp~~L~~rVr~y~~y~w~ 455 (707)
+|-+++++-..+=++..|.
T Consensus 357 qLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 357 QLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777666666666665555
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.83 E-value=0.00016 Score=77.80 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHhcccCCcc--cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q 044081 358 NKYFYCFWWGLRNLSSLGQNL--ATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIR 418 (707)
Q Consensus 358 ~~Y~~slyW~l~tlstvG~gd--~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~ 418 (707)
..+..+|++++.|+||+|||. ++|....-.++.++=+++|+++.|+++|.+-+=++.-..|
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~R 145 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKKR 145 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCG
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 457789999999999999998 6788888888899999999999999999999888765443
No 34
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.81 E-value=4e-05 Score=84.37 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044081 358 NKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYL 412 (707)
Q Consensus 358 ~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l 412 (707)
..+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999999999999999999998887755
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.43 E-value=0.00085 Score=77.52 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=89.0
Q ss_pred HHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehh-hhhhccCCCCCCCCCCcc
Q 044081 503 ICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEE-LLTWALDPRPTVILPSST 581 (707)
Q Consensus 503 L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~-~l~~~ld~~~~~~~~~~~ 581 (707)
++.+++...+..|++|++.|++.+.+|.+.+|.+++...++.++... +....||+.|-.. +++ |-.++.....++
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l-lk~V~~G~~~tSllSiL---d~l~~~ps~~~~ 186 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL-LKTVPPGGSFTSLLSIL---DSLPGFPSLSRT 186 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee-EeeccCCCchHhHHHHH---HhccCCCcccce
Confidence 34677788899999999999999999999999999987665444332 6799999877766 444 544443335667
Q ss_pred eEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHH
Q 044081 582 RSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKF 619 (707)
Q Consensus 582 ~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~ 619 (707)
..++|.++|.+..++.+.|..+...||+-..+..|-.+
T Consensus 187 i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvm 224 (1158)
T KOG2968|consen 187 IAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVM 224 (1158)
T ss_pred eeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHH
Confidence 88999999999999999999999999986655555433
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00072 Score=75.14 Aligned_cols=60 Identities=17% Similarity=0.391 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRM 419 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~ 419 (707)
+..++|++.+++||+|||+++|.|..+++|+|+-+++|+-++..++++++..+...-.+.
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999999999999999999999997654443
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.01 E-value=0.015 Score=57.82 Aligned_cols=96 Identities=6% Similarity=-0.082 Sum_probs=72.9
Q ss_pred HHHHHHhcCEEEEecCCcEE-EccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCC
Q 044081 499 ILDVICERLKPVLGTKGIFL-VREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVIL 577 (707)
Q Consensus 499 ~l~~L~~~l~~~~~~~ge~I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~ 577 (707)
..+.+....++..+++|..+ ....+..+..++|.+|.+.+.. .++ - .+....+-.+||-...+ .+
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~d~--l--l~~t~~aP~IlGl~~~~---~~------ 79 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-EEN--V--LIGITQAPYIMGLADGL---MK------ 79 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-cCC--e--EEEeccCCeEeeccccc---CC------
Confidence 45667777888999999997 5444445779999999999953 332 2 25677888899987544 11
Q ss_pred CCcceEEEEcceEEEEEecHHHHHHHHHHcH
Q 044081 578 PSSTRSVKAITEVEAFTLTAEDLTFVASQFR 608 (707)
Q Consensus 578 ~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p 608 (707)
....+.++|.++|+++.++.++|.++++++.
T Consensus 80 ~~~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 80 NDIPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred CCceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 1235789999999999999999999998875
No 38
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.97 E-value=0.016 Score=54.37 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHhc-CEEEEecCCcEEEccCC-CcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCC
Q 044081 494 QMDETILDVICER-LKPVLGTKGIFLVREGD-PVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDP 571 (707)
Q Consensus 494 ~ls~~~l~~L~~~-l~~~~~~~ge~I~~eGd-~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~ 571 (707)
+.+......|+.. .+.....+|+.-.-||. +.|.+-++++|++++... |+ + +..+.|-+|...-.+.. +
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~--f--LH~I~p~qFlDSPEW~s-~-- 84 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GR--F--LHYIYPYQFLDSPEWES-L-- 84 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CE--e--eEeecccccccChhhhc-c--
Confidence 4578888888877 66788999999988885 689999999999998742 22 2 67889999888776541 1
Q ss_pred CCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHH
Q 044081 572 RPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLH 611 (707)
Q Consensus 572 ~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~ 611 (707)
+++ ....-..|+.|.++|..+..+++.+..++...|-++
T Consensus 85 ~~s-~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~ 123 (153)
T PF04831_consen 85 RPS-EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLA 123 (153)
T ss_pred ccC-CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHH
Confidence 111 334567899999999999999999999999999654
No 39
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.47 E-value=0.14 Score=60.21 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=52.1
Q ss_pred ccccceeECCCChhHHHHHHHH---------HHHHHHHHHHhhhhccccccccccceeecCCccch-hhhHHHHHHHHHH
Q 044081 73 KVKKHIILYPNGKTIRLWSKIF---------LVACLVSVFLDPLFFYLPIVRREEMCIDNGVRTLE-TTLTIIRILADVF 142 (707)
Q Consensus 73 ~~~~~~ii~P~s~~~~~W~~~~---------li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~-~~~~~~~~~~d~~ 142 (707)
.|+.- ++.|+++|+..-..++ ++...++.+.+-+. -| .++..... +.+++-++++..+
T Consensus 1101 ~Ws~y-lF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale--rp---------~i~~~s~EriFltlsnyIFtaI 1168 (1956)
T KOG2302|consen 1101 LWSKY-LFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE--RP---------AIVEGSTERIFLTLSNYIFTAI 1168 (1956)
T ss_pred HHHHH-hcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc--cc---------ccccCcceEEEEEecchHHHHH
Confidence 45444 9999999987655543 33333444333332 11 11112223 3344556999999
Q ss_pred HHHHHHhhhce-eEEcCCCcccCCCeEeeChHHHHHHhhhh-chHHHHH
Q 044081 143 YVIQIFVCFRT-AYVAPSSRVFGRGEFVVEPSKIASRCLQR-GFWLDFI 189 (707)
Q Consensus 143 f~~di~l~f~t-ay~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDll 189 (707)
|+.++.++-.. |.+- || ..|+++ |..+|.+
T Consensus 1169 fV~Em~lKVVALGl~f--------ge---------~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1169 FVVEMTLKVVALGLYF--------GE---------QAYLRSSWNVLDGF 1200 (1956)
T ss_pred HHHHHHHHHHhhhhcc--------ch---------HHHHHHHHHhhhHH
Confidence 99999998652 3221 22 469988 9888864
No 40
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.05 E-value=0.0086 Score=67.14 Aligned_cols=114 Identities=13% Similarity=0.292 Sum_probs=88.5
Q ss_pred HHHHHHhhcCccccCCCHHHHHHHHhcCEEEE-ecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCC
Q 044081 480 HLCLNLVRRVPLFHQMDETILDVICERLKPVL-GTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGD 558 (707)
Q Consensus 480 ~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~-~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 558 (707)
+..++++.+.|-|.+|+-...++||..|.... -.+|++|+..|+..+..++|+.|.|++...+|.++ .+.-|+
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e------~l~mGn 350 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKRE------ELKMGN 350 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceE------Eeeccc
Confidence 34578888999999999999999999887544 47899999999999999999999999998887753 567799
Q ss_pred eeehhhhhhccCCCCCCCCCCcceEE-EEcceEEEEEecHHHHHHHHHHcH
Q 044081 559 FCGEELLTWALDPRPTVILPSSTRSV-KAITEVEAFTLTAEDLTFVASQFR 608 (707)
Q Consensus 559 ~fGe~~l~~~ld~~~~~~~~~~~~tv-~Alt~~~ll~L~~~df~~ll~~~p 608 (707)
.||..--. |.. ...--+ .-+.+|+...|...|+-.++.+-.
T Consensus 351 SFG~~PT~---dkq------ym~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 351 SFGAEPTP---DKQ------YMIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred ccCCCCCc---chh------hhhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 99976221 111 001111 246799999999999999987543
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.56 E-value=0.063 Score=56.10 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcccCCcccccCch--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYI--------GEILFTIVIATLGLVLFSLLIGNMQRYLQST 415 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~--------~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 415 (707)
|+.|+|+.+.|+||+|+||.++.-. .=..++++.+++|+.+++-+++.+.--+..+
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~ 250 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTM 250 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788999999999999999877433 2246788889999999988887666555443
No 42
>PLN03223 Polycystin cation channel protein; Provisional
Probab=94.40 E-value=3.4 Score=51.26 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044081 384 IGEILFTIVIATLGLVLFSLLIGNMQRYLQST 415 (707)
Q Consensus 384 ~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 415 (707)
.+-..|..+++++..++.-++|+.|..-++..
T Consensus 1394 LGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1394 VGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888888888888887754
No 43
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.28 E-value=0.23 Score=53.33 Aligned_cols=60 Identities=13% Similarity=0.376 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcccCCccc--ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 044081 360 YFYCFWWGLRNLSSLGQNLA--TSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRM 419 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~--~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~ 419 (707)
+..+|-+++-|=||+|||-- |..-..-++.-++-+|+|+++-|+++|.|-.-+..-.+|.
T Consensus 113 f~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRA 174 (400)
T KOG3827|consen 113 FTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRA 174 (400)
T ss_pred hhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 44567778899999999964 4444566677777889999999999999887776554443
No 44
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=93.77 E-value=0.01 Score=61.75 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 044081 359 KYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLL 404 (707)
Q Consensus 359 ~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~l 404 (707)
++.-|||++.+.+||+|||-.+|.|.++++|+|+-.++|+-+--..
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvm 125 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVM 125 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHH
Confidence 4556899999999999999999999999999999999987554433
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.14 Score=56.51 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHH
Q 044081 362 YCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVL 400 (707)
Q Consensus 362 ~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~l 400 (707)
.|+|+.+.|.|||||||..|....-.+..++++-+.+++
T Consensus 220 ~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ 258 (1087)
T KOG3193|consen 220 TSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGL 258 (1087)
T ss_pred eeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhc
Confidence 468899999999999999999877766555444444433
No 46
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=91.33 E-value=0.27 Score=55.70 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=78.8
Q ss_pred CcchHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEE
Q 044081 470 PFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFF 549 (707)
Q Consensus 470 p~~Lr~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~ 549 (707)
|+.||.-.........|.+...|.++-...+.++|...+...++.+.++++.||.+...|++++|.|-+. |
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----g----- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----G----- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----c-----
Confidence 4444444433333456778899999999999999999999999999999999999999999999998663 1
Q ss_pred EeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEec
Q 044081 550 NSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLT 596 (707)
Q Consensus 550 ~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~ 596 (707)
..+-|-..||.. .+..|+.++-.+++++..+++
T Consensus 94 --qi~mp~~~fgkr------------~g~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKR------------TGQNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred --ceecCccccccc------------cccccccceeeecccceeeee
Confidence 133444566654 223477888888999988884
No 47
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.00 E-value=1.6 Score=55.82 Aligned_cols=46 Identities=13% Similarity=0.338 Sum_probs=35.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhceeEEcCCCcccCCCeEeeChHHHHHHhhhh-chHHHHHHhCc
Q 044081 128 LETTLTIIRILADVFYVIQIFVCFRTAYVAPSSRVFGRGEFVVEPSKIASRCLQR-GFWLDFIAALP 193 (707)
Q Consensus 128 ~~~~~~~~~~~~d~~f~~di~l~f~tay~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP 193 (707)
....+...+.++-.+|+++++++...- |- .. |+++ |.++|++-+.-
T Consensus 870 ~~~~L~y~D~~Ft~iFt~Em~lK~ia~-----------Gf-------~~--y~rn~w~~lDf~Vv~v 916 (1592)
T KOG2301|consen 870 INGILEYADYIFTYIFTFEMLLKWIAY-----------GF-------FF--YFRNAWNWLDFVVVIV 916 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh-----------HH-------HH--HHhhHHhhhhHHHhhh
Confidence 456788999999999999999996542 32 12 9999 99999986554
No 48
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=90.81 E-value=0.054 Score=60.07 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhcccCCcccccCchhHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 044081 358 NKYFYCFWWGLRNLSSLGQNLATSTYIGEI--------LFTIVIATLGLVLFSLLIGNMQR 410 (707)
Q Consensus 358 ~~Y~~slyW~l~tlstvG~gd~~~~~~~E~--------~f~i~i~i~G~~lfa~lIg~~~~ 410 (707)
--|+.|+|+++.++||+|+||++|.+.... .+..+..++|+..++...-.+..
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 301 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLLGPDR 301 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhhcccc
Confidence 457789999999999999999999998766 68888899999988888743333
No 49
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.93 E-value=15 Score=43.39 Aligned_cols=74 Identities=24% Similarity=0.437 Sum_probs=57.3
Q ss_pred cccCCcccccCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHhCCCCHHHHH
Q 044081 372 SSLGQNLATSTY------IGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRM-EEWRIKRTDTEQWMHHRQLPPELRH 444 (707)
Q Consensus 372 stvG~gd~~~~~------~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~r~lp~~L~~ 444 (707)
.|+|+||..... ..-++|.+++++.-++++=++|+-|++......... ++|+.+...+- -|-.|.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~i-L~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAATI-LMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH-HHHHhcCCHHHHH
Confidence 578999865543 446778888888889999999999999888877666 78887766554 4556899999998
Q ss_pred HH
Q 044081 445 SV 446 (707)
Q Consensus 445 rV 446 (707)
+-
T Consensus 680 ~~ 681 (782)
T KOG3676|consen 680 RF 681 (782)
T ss_pred HH
Confidence 83
No 50
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.55 E-value=2.5e+02 Score=35.72 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=33.6
Q ss_pred HHhhhh-chHHHHHHhCchhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhHHHhhhhccchhhhh
Q 044081 177 SRCLQR-GFWLDFIAALPLPQVLIWVVVPNLEIPAVTMTVSILRILILFQYLPRVFLIFPLTSKIVEA 243 (707)
Q Consensus 177 ~~Yl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~~~l~q~l~Rl~ri~~l~~~i~~~ 243 (707)
+-|+.. |+.+|++|++=|..=++.-..|.. ....-|++-.+-++-.-.||+.++.+.+.+--.
T Consensus 856 ~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~----~~~~GRvIl~~d~i~~t~rLl~~f~V~~~lGPy 919 (1381)
T KOG3614|consen 856 RVYFADFWNLIDLLAILLFLVGPVLRLLPID----SIYSGRVILCFDFILFTLRLLHYFTVSKQLGPY 919 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeEecCcc----ceecceeeeeehHHHHHHHHhhheeeccccCch
Confidence 345554 999999999877554444444411 111111111111111236889988888765433
No 51
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.98 E-value=23 Score=42.17 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=32.4
Q ss_pred hCCcchHHHHHHHHHHHHhh-----cCccccCCCHHHHHHHHhcC
Q 044081 468 ELPFDLRREIKRHLCLNLVR-----RVPLFHQMDETILDVICERL 507 (707)
Q Consensus 468 ~Lp~~Lr~~i~~~l~~~lL~-----~vplF~~ls~~~l~~L~~~l 507 (707)
+||++||+.|..+...+... +-.++++++++..+.|+.++
T Consensus 372 ~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 372 QLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 69999999999998876644 34677889998888888776
No 52
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=71.47 E-value=6.7 Score=31.35 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=32.7
Q ss_pred EEecCCcEEEccCCCcC-eEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 510 VLGTKGIFLVREGDPVQ-QMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 510 ~~~~~ge~I~~eGd~~~-~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
..++||+..-..-.+.. ++++|++|++.+. .++. ...+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~~------~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDGE------RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETTE------EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-EccE------EeEccCCEEEE
Confidence 46788887766555556 9999999999987 4433 34788888653
No 53
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=70.98 E-value=2.4e+02 Score=34.01 Aligned_cols=47 Identities=26% Similarity=0.475 Sum_probs=34.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHH
Q 044081 382 TYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIR-MEEWRIKRTD 428 (707)
Q Consensus 382 ~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~-~~e~~~k~~~ 428 (707)
...+-.+|.+++.+.-+++.=++|+.|.+..+..... .++|+-.+..
T Consensus 585 ~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~~r~~ 632 (743)
T TIGR00870 585 EFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKFQRAK 632 (743)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 3467788888888888888888999998888876554 5566655443
No 54
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=65.32 E-value=32 Score=31.62 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=42.0
Q ss_pred EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcc
Q 044081 509 PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAIT 588 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt 588 (707)
...++||..+-..-....++++|++|++++...++++ ...+.+||.+---+- .+..+++.+
T Consensus 39 ~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~--------------~~H~~~N~e 99 (125)
T PRK13290 39 ETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKH--------------DRHYLRAGE 99 (125)
T ss_pred EEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCC--------------CcEEEEcCC
Confidence 3567888755332222247999999999986332233 358899998764321 134555557
Q ss_pred eEEEEEe
Q 044081 589 EVEAFTL 595 (707)
Q Consensus 589 ~~~ll~L 595 (707)
+++++.+
T Consensus 100 ~~~~l~v 106 (125)
T PRK13290 100 DMRLVCV 106 (125)
T ss_pred CEEEEEE
Confidence 7777665
No 55
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.79 E-value=2.3e+02 Score=37.32 Aligned_cols=49 Identities=12% Similarity=0.210 Sum_probs=33.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhceeEEcCCCcccCCCeEeeChHHHHHHhhhh-chHHHHHHhCchhh
Q 044081 127 TLETTLTIIRILADVFYVIQIFVCFRTAYVAPSSRVFGRGEFVVEPSKIASRCLQR-GFWLDFIAALPLPQ 196 (707)
Q Consensus 127 ~~~~~~~~~~~~~d~~f~~di~l~f~tay~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lPl~~ 196 (707)
.+.....+.+.++-.+|..++.+..-. .+ .+.|.++ |.++|.+-+. +..
T Consensus 470 ~~~~~l~~~~~vF~~lF~~Em~~ki~a--l~------------------~~~yF~~~~n~fD~~iv~-l~~ 519 (1592)
T KOG2301|consen 470 ARNYLLYLGNVVFTGLFTVEMILKIYA--LG------------------PRNYFRRGWNIFDLIIVL-LSL 519 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--cC------------------cHHHHhhhcchheEEEEe-hhh
Confidence 335566777888888888898887542 11 1357776 8999987766 443
No 56
>COG4709 Predicted membrane protein [Function unknown]
Probab=63.62 E-value=30 Score=33.96 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cCCCHHHHHhhC--CcchHHHHHHHHHHHHhhcCccccCCCH
Q 044081 425 KRTDTEQWMHHRQLPPELRHSVRKFDQYKWVAT--RGVDEEAILHEL--PFDLRREIKRHLCLNLVRRVPLFHQMDE 497 (707)
Q Consensus 425 k~~~~~~~m~~r~lp~~L~~rVr~y~~y~w~~~--~~~~e~~ll~~L--p~~Lr~~i~~~l~~~lL~~vplF~~ls~ 497 (707)
=++.+++|+ +.||++.+..+..||+-.+.+. .|.+|+++..+| |.++-+|+..+.-.+-.+.-|-+.+.+.
T Consensus 6 fL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ 80 (195)
T COG4709 6 FLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRR 80 (195)
T ss_pred HHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHH
Confidence 356678888 4899999999988888777654 478899999987 5567677766655555555455554443
No 57
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=61.91 E-value=10 Score=33.95 Aligned_cols=45 Identities=29% Similarity=0.495 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHH----------hcCCCHHHHHhhCCcchHHHHHHH
Q 044081 436 RQLPPELRHSVRKFDQYKWVA----------TRGVDEEAILHELPFDLRREIKRH 480 (707)
Q Consensus 436 r~lp~~L~~rVr~y~~y~w~~----------~~~~~e~~ll~~Lp~~Lr~~i~~~ 480 (707)
.-||+++|..|...+.-.-.. ....|...+|..||++||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 368999999999887755332 223566799999999999999754
No 58
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=59.88 E-value=43 Score=32.70 Aligned_cols=55 Identities=27% Similarity=0.456 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcCCCHHHHHhhC--CcchHHHHHHHH
Q 044081 425 KRTDTEQWMHHRQLPPELRHSVRKFDQYKWVA--TRGVDEEAILHEL--PFDLRREIKRHL 481 (707)
Q Consensus 425 k~~~~~~~m~~r~lp~~L~~rVr~y~~y~w~~--~~~~~e~~ll~~L--p~~Lr~~i~~~l 481 (707)
=+++++.+++ ++|++-++.+.+||+-...+ ..|.+|+++.++| |.++-+++..+.
T Consensus 6 fL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 6 FLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 3566778886 59999999999998888775 4578899999997 666767766543
No 59
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=58.22 E-value=12 Score=22.82 Aligned_cols=17 Identities=41% Similarity=0.491 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhh
Q 044081 630 AACFIQAAWRRHKNLKE 646 (707)
Q Consensus 630 ~~~~iq~a~r~~~~r~~ 646 (707)
++..||+.||.+.-|+.
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67889999999998864
No 60
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=53.96 E-value=64 Score=25.33 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHHHHHh
Q 044081 385 GEILFTIVIATLGLVLFSLLIGNMQRYLQSTSI---RMEEWRIKRTDTEQWMHH 435 (707)
Q Consensus 385 ~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~---~~~e~~~k~~~~~~~m~~ 435 (707)
+..++.+.+.++-+++++.+-+-|-.++++... ...++++|++.+-+-+.+
T Consensus 4 ~~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 4 GDLIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHcc
Confidence 445555533333333333333345555554332 333688999888776543
No 61
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=53.38 E-value=13 Score=34.38 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh
Q 044081 356 ILNKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDTEQWMHH 435 (707)
Q Consensus 356 ~~~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~ 435 (707)
.......++|..+.++.. +-++..|.+...+++.+++.++++++.+.-.|++.+++..-.. ....+.+++..++
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~-----~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY-----EPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----TSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----CCCCCCHHHHHHC
Confidence 345667788888877765 3346889999999999999999999999999999999965422 2224455555544
Q ss_pred C
Q 044081 436 R 436 (707)
Q Consensus 436 r 436 (707)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 62
>PLN03223 Polycystin cation channel protein; Provisional
Probab=51.78 E-value=5.7e+02 Score=32.99 Aligned_cols=16 Identities=13% Similarity=0.056 Sum_probs=13.1
Q ss_pred HHhhhh-chHHHHHHhC
Q 044081 177 SRCLQR-GFWLDFIAAL 192 (707)
Q Consensus 177 ~~Yl~~-~F~iDlls~l 192 (707)
++|+++ |-|+|++.++
T Consensus 1208 laYFKSfWNwLEIl~Il 1224 (1634)
T PLN03223 1208 LAYFLSGWNYVDFASIG 1224 (1634)
T ss_pred hhHhccchHHHHHHHHH
Confidence 689999 9999996543
No 63
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=51.17 E-value=24 Score=29.12 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=28.0
Q ss_pred ecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 512 GTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 512 ~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
..||..-..-. .+++.+|++|.+.+... +|. ...+++||.|=
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 35555433322 38899999999998754 343 34788998764
No 64
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=49.24 E-value=5.9e+02 Score=31.27 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCcchHHHHHHHHH
Q 044081 436 RQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRHLC 482 (707)
Q Consensus 436 r~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~ 482 (707)
.+||+.||..|..+..... +..-.+++.++++...++...+.
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~ 398 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMK 398 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhh
Confidence 4799999999987765433 23345777888877777665553
No 65
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=45.80 E-value=93 Score=34.27 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 044081 356 ILNKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSI 417 (707)
Q Consensus 356 ~~~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 417 (707)
..--|+-++=+++..+-+++-++....-..-..+++++.++++++|-+.|.++...+|-.+.
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~i 158 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNI 158 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34457777878888888877666522333348999999999999999999999998875443
No 66
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=43.72 E-value=46 Score=31.93 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=30.4
Q ss_pred cCCcEE-EccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 513 TKGIFL-VREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 513 ~~ge~I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
.+|+.- +... ..++++++++|.+.+-..++|+-. ...+++||+|=
T Consensus 36 Gpn~R~d~H~~-~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl 81 (159)
T TIGR03037 36 GPNARTDFHDD-PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFL 81 (159)
T ss_pred CCCCCcccccC-CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEE
Confidence 444333 3433 378999999999999766655422 34889998873
No 67
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=39.64 E-value=2.4e+02 Score=27.97 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHhcCEEEE--ecCCcEEEccCCCcC
Q 044081 494 QMDETILDVICERLKPVL--GTKGIFLVREGDPVQ 526 (707)
Q Consensus 494 ~ls~~~l~~L~~~l~~~~--~~~ge~I~~eGd~~~ 526 (707)
..++...........+.. +.+|+.|+++|+.++
T Consensus 173 ~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 173 EATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 456677778888888888 999999999999765
No 68
>PF03010 GP4: GP4; InterPro: IPR004257 This family contains a predicted structural envelope protein Gp4 from Equine arteritis virus (EAV).
Probab=39.42 E-value=13 Score=32.62 Aligned_cols=14 Identities=29% Similarity=0.849 Sum_probs=11.0
Q ss_pred ccccccceeeeecC
Q 044081 3 VYKLLPFCFCRVQD 16 (707)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (707)
.+-.||||||+|--
T Consensus 12 lfvglp~cwctfyp 25 (152)
T PF03010_consen 12 LFVGLPCCWCTFYP 25 (152)
T ss_pred HHcCCCceeEEeee
Confidence 35679999999854
No 69
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=38.17 E-value=91 Score=29.14 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=36.5
Q ss_pred CEEEEecCCcEEEccCCC-cCeEEEEEeeEEEEEEecC-CeeeEEEeeecCCCCeeeh
Q 044081 507 LKPVLGTKGIFLVREGDP-VQQMLFIVRGQLDSYTTNG-GHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fGe 562 (707)
+....+.+|...-..-.+ .+++++|++|...+...+. +++.. ...+.+||.+--
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEEE
Confidence 345567888876544433 5789999999999876543 23333 468899997654
No 70
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=36.74 E-value=41 Score=21.57 Aligned_cols=18 Identities=50% Similarity=0.543 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 044081 629 WAACFIQAAWRRHKNLKE 646 (707)
Q Consensus 629 ~~~~~iq~a~r~~~~r~~ 646 (707)
-++..||+.||.+.-|+.
T Consensus 4 ~aa~~IQa~~Rg~~~r~~ 21 (26)
T smart00015 4 RAAIIIQAAWRGYLARKR 21 (26)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478889999999998764
No 71
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=35.78 E-value=1.8e+02 Score=21.78 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 044081 387 ILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDT 429 (707)
Q Consensus 387 ~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~ 429 (707)
..++.+..+.-++....+...+++.-.......++++..-+++
T Consensus 7 ~~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 7 IVVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666667666666777777777766654
No 72
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=35.21 E-value=86 Score=28.58 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=38.1
Q ss_pred EEEEecCCcEEEccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehh
Q 044081 508 KPVLGTKGIFLVREGDP-VQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEE 563 (707)
Q Consensus 508 ~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 563 (707)
....+.||..+-.---+ .+...+|++|++++... +. ...+.+||++-..
T Consensus 46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 45678899988777776 77999999999998765 32 3478999998764
No 73
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=31.80 E-value=1.1e+02 Score=28.07 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=33.5
Q ss_pred cCEEEEecCCcEE-EccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCee
Q 044081 506 RLKPVLGTKGIFL-VREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFC 560 (707)
Q Consensus 506 ~l~~~~~~~ge~I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 560 (707)
......+++|+-+ .+--...+++|+|++|...+... ++ ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 3456677888875 44444479999999999998654 33 2467888765
No 74
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.99 E-value=1e+03 Score=28.89 Aligned_cols=73 Identities=30% Similarity=0.501 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcccCCccc-----ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHH
Q 044081 361 FYCFWWGLRNLSSLGQNLA-----TSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSI-RMEEWRIKRTDTEQWMH 434 (707)
Q Consensus 361 ~~slyW~l~tlstvG~gd~-----~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~-~~~e~~~k~~~~~~~m~ 434 (707)
+.+++|++-.++-++-.+. -..++++.+|.+-.++.=+++.-++|+.|.+-.|...- .-.|| |-..++-||+
T Consensus 555 ~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEW--KFARAKLw~s 632 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEW--KFARAKLWMS 632 (822)
T ss_pred HHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHH--HHHHHHHHHH
Confidence 4679999977765543322 22345666666666665566666666666666554422 22333 3445666776
Q ss_pred h
Q 044081 435 H 435 (707)
Q Consensus 435 ~ 435 (707)
.
T Consensus 633 y 633 (822)
T KOG3609|consen 633 Y 633 (822)
T ss_pred H
Confidence 5
No 75
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=30.78 E-value=90 Score=27.81 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHh---------cCC--C--HHHHHhhCCcchHHHHHHHHHHH
Q 044081 437 QLPPELRHSVRKFDQYKWVAT---------RGV--D--EEAILHELPFDLRREIKRHLCLN 484 (707)
Q Consensus 437 ~lp~~L~~rVr~y~~y~w~~~---------~~~--~--e~~ll~~Lp~~Lr~~i~~~l~~~ 484 (707)
-||+++|..|..-..-.-... .+. . ..++|..||++||.+|...-...
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 489999999854333221100 000 0 25899999999999998776544
No 76
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=30.54 E-value=91 Score=30.49 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=38.6
Q ss_pred CCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHH
Q 044081 523 DPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAE 598 (707)
Q Consensus 523 d~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~ 598 (707)
++.++++++++|.+.+...++|+.. ...+++||+|=-- +. -+.+-++..+|..+.+.+.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fllP--------~g------vpHsP~r~~~tv~LviE~~ 110 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLLP--------PH------VPHSPQREAGSIGLVIERK 110 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEeC--------CC------CCcCCccCCCeEEEEEEeC
Confidence 5678999999999998776665422 3478999887321 11 1233344577777777654
No 77
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=28.87 E-value=68 Score=22.58 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHH
Q 044081 628 TWAACFIQAAWRRHKNLKETA 648 (707)
Q Consensus 628 ~~~~~~iq~a~r~~~~r~~~~ 648 (707)
-+|+..||.-||+.++|+..+
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~~ 29 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQE 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999998765
No 78
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=28.72 E-value=1.6e+02 Score=34.22 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044081 362 YCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQ 413 (707)
Q Consensus 362 ~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~ 413 (707)
.++|++-..|..-|-|.-||.+..-++..++++=+.+++-|--.+|+++.|-
T Consensus 616 sAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 616 SAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 4677666666666777779999999999999988888888888888887763
No 79
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=26.86 E-value=1.8e+02 Score=24.66 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=42.3
Q ss_pred cCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEE
Q 044081 506 RLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVK 585 (707)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~ 585 (707)
......+.||..+-...-+..+..+|++|.+.- +++ .+.+||++=.- +.+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~--------~~~~G~~~~~p--------------~g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG--------RYGAGDWLRLP--------------PGSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC--------EEETTEEEEE---------------TTEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc--------cCCCCeEEEeC--------------CCCccccC
Confidence 345667889988887777778888999999862 222 34677765432 12456777
Q ss_pred EcceEEEEE
Q 044081 586 AITEVEAFT 594 (707)
Q Consensus 586 Alt~~~ll~ 594 (707)
+-+.|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888888875
No 80
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=26.63 E-value=1.7e+02 Score=27.63 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-------------hHHHHHHHHHHHHHHHHHHh
Q 044081 390 TIVIATLGLVLFSLLIGNMQRYLQST-------------SIRMEEWRIKRTDTEQWMHH 435 (707)
Q Consensus 390 ~i~i~i~G~~lfa~lIg~~~~~l~~~-------------~~~~~e~~~k~~~~~~~m~~ 435 (707)
.+++.++|+.+||++++-+.+.-... ....++|+.+++..++-++.
T Consensus 9 ~lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 9 GLLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 36789999999999998764322111 23578899998888866653
No 81
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=25.67 E-value=2.6e+02 Score=27.72 Aligned_cols=51 Identities=8% Similarity=-0.043 Sum_probs=31.5
Q ss_pred EEEecCCcEE---------EccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 509 PVLGTKGIFL---------VREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 509 ~~~~~~ge~I---------~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
...+.||... +.+.....++|++++|+..+...+..++.. ...+.+||.+=
T Consensus 72 ~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~--~~~v~pGd~v~ 131 (191)
T PRK04190 72 TTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEAR--WIEMEPGTVVY 131 (191)
T ss_pred EEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEE--EEEECCCCEEE
Confidence 4456777742 222223459999999999887654322222 35789998764
No 82
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=25.25 E-value=1.8e+02 Score=32.01 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=34.3
Q ss_pred EEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 508 KPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
....+.+|...-.--....++.++++|++++...+.+.+.+ ...+++||++=
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~--~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY--IDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE--EeEECCCCEEE
Confidence 34567777765322234568999999999997665433322 24799999874
No 83
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=24.04 E-value=1.9e+02 Score=31.89 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=33.9
Q ss_pred CEEEEecCCcEEEccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCee
Q 044081 507 LKPVLGTKGIFLVREGDP-VQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFC 560 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 560 (707)
+....+.||...-.-=-+ .+++++|++|++++...++..... ...+++||++
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~--~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNAR--TFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEE--EEEECCCCEE
Confidence 455667888766433233 679999999999987543322221 3468999865
No 84
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=23.28 E-value=1.4e+02 Score=20.72 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCCH-----HHHHHHHHHH
Q 044081 425 KRTDTEQWMHHRQLPP-----ELRHSVRKFD 450 (707)
Q Consensus 425 k~~~~~~~m~~r~lp~-----~L~~rVr~y~ 450 (707)
+..++.++++.++||. +|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 4567889999999985 7888888774
No 85
>PRK11171 hypothetical protein; Provisional
Probab=22.69 E-value=2e+02 Score=29.97 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=37.7
Q ss_pred cCEEEEecCCcEEEc-cCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 506 RLKPVLGTKGIFLVR-EGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 506 ~l~~~~~~~ge~I~~-eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
.+....++||..+-. +....++.++|++|++.+.. +++ ...+.+||++--
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~-----~~~l~~GD~i~~ 235 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NND-----WVEVEAGDFIWM 235 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEEE
Confidence 455678999999876 36677899999999998853 333 357899998653
No 86
>TIGR02523 type_IV_pilV type IV pilus modification protein PilV. Pilus systems categorized as type IV pilins differ greatly from one another, with some showing greater similarty to type II or type III secretion systems than to each other. Members of this protein family represent the PilV protein of type IV pilus systems as found in Pseudomonas aeruginosa PAO1, Pseudomonas syringae DC3000, Neisseria meningitidis MC58, Xylella fastidiosa 9a5c, etc.
Probab=22.01 E-value=3.5e+02 Score=25.29 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=22.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044081 382 TYIGEILFTIVIATLGLVLFSLLIGNMQRYL 412 (707)
Q Consensus 382 ~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l 412 (707)
.+..|.+++++|.-+|++-++-+.......-
T Consensus 4 fTLIEvLVAl~Ilaigllg~~~~~~~~~~~~ 34 (139)
T TIGR02523 4 FSMIEVLVALLVLAIGVLGMAALQLKAVRYT 34 (139)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999988877666655443333
No 87
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.94 E-value=1.2e+02 Score=28.98 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=27.8
Q ss_pred EccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehh
Q 044081 519 VREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEE 563 (707)
Q Consensus 519 ~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 563 (707)
..--...+++.+|++|...+.. +++ ...++|||+.|--
T Consensus 58 ~H~Hs~edEfv~ILeGE~~l~~-d~~------e~~lrpGD~~gFp 95 (161)
T COG3837 58 RHWHSAEDEFVYILEGEGTLRE-DGG------ETRLRPGDSAGFP 95 (161)
T ss_pred ccccccCceEEEEEcCceEEEE-CCe------eEEecCCceeecc
Confidence 3344557899999999998763 443 3488999998854
Done!