Query 044081
Match_columns 707
No_of_seqs 557 out of 3163
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:37:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 1.3E-34 4.3E-39 314.1 13.0 188 357-619 159-346 (355)
2 3ukn_A Novel protein similar t 100.0 6.1E-32 2.1E-36 271.0 15.7 204 409-628 1-206 (212)
3 2ptm_A Hyperpolarization-activ 100.0 9.4E-31 3.2E-35 259.5 23.5 191 414-619 2-192 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 1.6E-30 5.4E-35 258.8 22.1 189 413-617 2-190 (202)
5 1orq_C Potassium channel; volt 99.9 5.8E-22 2E-26 200.4 18.6 211 89-414 9-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 3.1E-19 1.1E-23 169.2 17.5 144 462-618 5-148 (160)
7 2r9r_B Paddle chimera voltage 99.8 3.7E-19 1.3E-23 200.7 18.3 294 81-482 174-489 (514)
8 3mdp_A Cyclic nucleotide-bindi 99.7 2.6E-17 8.9E-22 152.5 14.6 133 484-625 6-140 (142)
9 3gyd_A CNMP-BD protein, cyclic 99.7 7.8E-17 2.7E-21 157.9 18.4 155 462-627 13-172 (187)
10 3ocp_A PRKG1 protein; serine/t 99.7 2.8E-17 9.4E-22 152.5 13.4 131 468-613 7-137 (139)
11 4ev0_A Transcription regulator 99.7 3.1E-16 1E-20 156.3 19.6 184 486-681 1-187 (216)
12 3idb_B CAMP-dependent protein 99.7 5.1E-17 1.8E-21 154.7 12.5 128 474-612 28-155 (161)
13 3dn7_A Cyclic nucleotide bindi 99.7 1.4E-16 4.9E-21 156.2 15.8 127 483-620 6-134 (194)
14 3dv8_A Transcriptional regulat 99.7 4.1E-16 1.4E-20 155.8 17.1 187 484-681 3-193 (220)
15 2pqq_A Putative transcriptiona 99.7 2.5E-16 8.7E-21 146.9 13.8 124 483-617 4-128 (149)
16 1wgp_A Probable cyclic nucleot 99.7 2E-17 6.8E-22 152.8 6.1 129 484-612 6-134 (137)
17 2z69_A DNR protein; beta barre 99.7 6.8E-16 2.3E-20 145.0 16.2 127 483-620 11-139 (154)
18 3d0s_A Transcriptional regulat 99.7 3E-16 1E-20 157.8 13.7 189 483-682 5-202 (227)
19 3fx3_A Cyclic nucleotide-bindi 99.7 5.8E-16 2E-20 156.8 14.3 128 482-620 9-137 (237)
20 1vp6_A CNBD, cyclic-nucleotide 99.7 1.1E-15 3.7E-20 141.1 14.6 122 482-620 9-130 (138)
21 3e97_A Transcriptional regulat 99.7 1.3E-15 4.3E-20 153.7 16.0 128 483-621 5-133 (231)
22 3dkw_A DNR protein; CRP-FNR, H 99.6 9E-16 3.1E-20 154.1 14.4 132 483-625 8-141 (227)
23 3iwz_A CAP-like, catabolite ac 99.6 4.5E-15 1.6E-19 149.2 18.7 129 483-621 10-144 (230)
24 2gau_A Transcriptional regulat 99.6 3E-15 1E-19 151.0 15.9 183 488-681 14-204 (232)
25 3pna_A CAMP-dependent protein 99.6 3.4E-15 1.2E-19 141.0 14.7 118 479-611 33-150 (154)
26 3shr_A CGMP-dependent protein 99.6 5.3E-15 1.8E-19 155.3 16.5 141 464-619 19-159 (299)
27 1zyb_A Transcription regulator 99.6 1.6E-15 5.4E-20 153.5 11.6 130 481-620 15-147 (232)
28 3ryp_A Catabolite gene activat 99.6 9.6E-15 3.3E-19 144.7 16.2 122 490-621 2-124 (210)
29 4ava_A Lysine acetyltransferas 99.6 1.1E-14 3.7E-19 155.5 16.3 128 483-622 12-139 (333)
30 1ft9_A Carbon monoxide oxidati 99.6 7.2E-15 2.4E-19 147.4 12.5 177 485-683 1-189 (222)
31 2d93_A RAP guanine nucleotide 99.6 1.5E-15 5.2E-20 139.9 6.8 124 470-608 2-127 (134)
32 2oz6_A Virulence factor regula 99.6 3.3E-14 1.1E-18 140.5 16.8 121 495-622 1-122 (207)
33 2fmy_A COOA, carbon monoxide o 99.6 7.8E-15 2.7E-19 146.8 12.2 181 484-682 4-192 (220)
34 2qcs_B CAMP-dependent protein 99.6 4.4E-14 1.5E-18 147.5 16.5 127 481-618 154-282 (291)
35 2a9h_A Voltage-gated potassium 99.6 1.8E-14 6E-19 136.4 11.9 64 358-421 83-146 (155)
36 1o5l_A Transcriptional regulat 99.5 2.5E-14 8.6E-19 142.6 13.3 122 489-620 4-126 (213)
37 3kcc_A Catabolite gene activat 99.5 5.6E-14 1.9E-18 144.8 15.9 118 493-620 55-173 (260)
38 3shr_A CGMP-dependent protein 99.5 1.9E-14 6.4E-19 151.1 12.2 129 480-619 153-283 (299)
39 3of1_A CAMP-dependent protein 99.5 4.6E-14 1.6E-18 143.1 13.2 123 482-619 5-127 (246)
40 3of1_A CAMP-dependent protein 99.5 6.1E-14 2.1E-18 142.2 14.0 117 481-611 122-238 (246)
41 2qcs_B CAMP-dependent protein 99.5 9.6E-14 3.3E-18 144.9 15.9 129 477-620 32-160 (291)
42 3tnp_B CAMP-dependent protein 99.5 9.7E-14 3.3E-18 153.1 15.5 129 474-613 135-263 (416)
43 3e6c_C CPRK, cyclic nucleotide 99.5 9.7E-14 3.3E-18 141.8 12.0 123 486-622 11-134 (250)
44 4din_B CAMP-dependent protein 99.5 6.4E-14 2.2E-18 152.8 11.3 132 480-620 244-375 (381)
45 4h33_A LMO2059 protein; bilaye 99.5 6.5E-14 2.2E-18 130.0 8.6 92 360-451 44-135 (137)
46 4din_B CAMP-dependent protein 99.5 2.5E-13 8.5E-18 148.1 13.6 131 475-620 121-251 (381)
47 1o7f_A CAMP-dependent RAP1 gua 99.5 3.8E-13 1.3E-17 150.4 15.4 136 468-613 26-162 (469)
48 3vou_A ION transport 2 domain 99.5 6.6E-13 2.2E-17 125.1 14.1 86 360-445 53-148 (148)
49 2bgc_A PRFA; bacterial infecti 99.5 4.8E-13 1.6E-17 135.7 14.2 181 493-684 2-197 (238)
50 3la7_A Global nitrogen regulat 99.4 1.4E-12 4.8E-17 132.8 15.4 115 497-620 30-148 (243)
51 3tnp_B CAMP-dependent protein 99.4 4.8E-13 1.6E-17 147.5 12.2 120 483-613 266-392 (416)
52 1o7f_A CAMP-dependent RAP1 gua 99.4 8.2E-13 2.8E-17 147.6 13.3 122 480-615 333-456 (469)
53 2ih3_C Voltage-gated potassium 99.4 1.6E-12 5.6E-17 118.1 11.4 59 359-417 61-119 (122)
54 4f7z_A RAP guanine nucleotide 99.3 1.3E-11 4.3E-16 150.9 15.4 135 464-611 23-160 (999)
55 3cf6_E RAP guanine nucleotide 99.3 9.2E-12 3.1E-16 145.4 13.4 133 463-610 12-146 (694)
56 3eff_K Voltage-gated potassium 99.3 1.7E-11 5.8E-16 114.1 12.4 89 359-448 40-129 (139)
57 3rvy_A ION transport protein; 99.3 1.4E-11 4.9E-16 128.7 13.1 62 357-418 178-245 (285)
58 3b02_A Transcriptional regulat 99.2 1.6E-11 5.5E-16 120.4 8.9 93 510-620 2-95 (195)
59 4f7z_A RAP guanine nucleotide 99.2 8E-11 2.7E-15 143.8 16.2 129 464-607 318-448 (999)
60 2zcw_A TTHA1359, transcription 99.1 1E-10 3.5E-15 115.1 8.3 98 504-620 2-102 (202)
61 2q67_A Potassium channel prote 99.1 8E-10 2.7E-14 99.0 12.0 61 360-420 50-110 (114)
62 3ouf_A Potassium channel prote 99.0 1.7E-09 5.9E-14 93.9 11.0 55 360-414 33-87 (97)
63 2k1e_A Water soluble analogue 99.0 1.2E-10 4.1E-15 102.5 3.5 59 359-417 40-98 (103)
64 3pjs_K KCSA, voltage-gated pot 98.9 1.1E-10 3.7E-15 112.0 -1.2 65 358-422 66-130 (166)
65 3ldc_A Calcium-gated potassium 98.9 3.1E-09 1E-13 89.3 7.8 53 360-412 29-81 (82)
66 1xl4_A Inward rectifier potass 98.8 1.8E-08 6.3E-13 105.4 10.1 56 359-414 82-137 (301)
67 3um7_A Potassium channel subfa 98.7 6.5E-08 2.2E-12 100.9 10.2 57 359-415 115-171 (309)
68 1p7b_A Integral membrane chann 98.6 3.9E-08 1.3E-12 104.1 7.6 57 360-416 97-153 (333)
69 2qks_A KIR3.1-prokaryotic KIR 98.6 1.8E-07 6.2E-12 98.6 12.1 59 359-417 78-136 (321)
70 3sya_A G protein-activated inw 98.6 3.2E-07 1.1E-11 96.8 12.4 59 360-418 92-152 (340)
71 4dxw_A Navrh, ION transport pr 98.3 7.1E-06 2.4E-10 82.4 15.7 75 89-194 13-88 (229)
72 3spc_A Inward-rectifier K+ cha 98.3 1.9E-06 6.5E-11 91.0 11.7 59 359-417 94-154 (343)
73 4gx0_A TRKA domain protein; me 98.3 2.2E-06 7.4E-11 98.0 12.4 53 360-412 52-105 (565)
74 3ukm_A Potassium channel subfa 98.3 1.2E-06 4.1E-11 90.1 8.1 56 359-414 93-148 (280)
75 3um7_A Potassium channel subfa 98.3 3.7E-07 1.3E-11 95.2 4.3 60 360-419 225-290 (309)
76 3ukm_A Potassium channel subfa 98.2 4.3E-06 1.5E-10 85.9 11.4 56 360-415 202-264 (280)
77 1lnq_A MTHK channels, potassiu 98.0 5.1E-07 1.7E-11 96.2 -1.8 55 361-415 47-101 (336)
78 2kyh_A KVAP, voltage-gated pot 98.0 1.2E-05 4.2E-10 74.9 7.3 77 89-196 22-98 (147)
79 1ors_C Potassium channel; volt 97.6 5.1E-05 1.7E-09 69.4 5.5 77 89-196 7-83 (132)
80 2kxw_B Sodium channel protein 85.9 0.53 1.8E-05 30.1 2.5 20 626-645 4-23 (27)
81 2l53_B CAM, voltage-gated sodi 85.2 0.66 2.3E-05 30.6 2.8 22 625-646 3-24 (31)
82 3fjs_A Uncharacterized protein 70.7 14 0.00049 31.6 8.0 66 508-594 39-104 (114)
83 3rns_A Cupin 2 conserved barre 67.8 16 0.00053 35.7 8.5 68 507-595 39-106 (227)
84 2ozj_A Cupin 2, conserved barr 66.2 17 0.00058 30.8 7.5 64 511-595 44-107 (114)
85 2pfw_A Cupin 2, conserved barr 62.1 36 0.0012 28.5 8.9 67 508-595 37-103 (116)
86 3kg2_A Glutamate receptor 2; I 61.8 7.4 0.00025 45.5 5.7 55 359-414 563-617 (823)
87 1yhf_A Hypothetical protein SP 58.8 33 0.0011 28.7 8.0 67 508-595 43-109 (115)
88 3lwc_A Uncharacterized protein 58.5 23 0.00079 30.7 7.0 45 509-561 44-88 (119)
89 4e2g_A Cupin 2 conserved barre 48.5 46 0.0016 28.4 7.3 47 508-561 44-90 (126)
90 1o5u_A Novel thermotoga mariti 46.6 54 0.0019 27.4 7.2 47 507-561 33-79 (101)
91 3h8u_A Uncharacterized conserv 42.2 34 0.0011 29.3 5.3 49 507-561 41-90 (125)
92 1yfu_A 3-hydroxyanthranilate-3 41.9 35 0.0012 31.9 5.5 35 524-561 54-88 (174)
93 1dgw_A Canavalin; duplicated s 41.6 34 0.0012 31.9 5.6 52 507-561 43-94 (178)
94 2bnm_A Epoxidase; oxidoreducta 40.8 67 0.0023 29.9 7.7 49 510-561 122-173 (198)
95 2gu9_A Tetracenomycin polyketi 40.6 41 0.0014 27.8 5.5 47 508-561 24-73 (113)
96 3rns_A Cupin 2 conserved barre 39.7 63 0.0021 31.2 7.4 68 507-595 155-223 (227)
97 4b29_A Dimethylsulfoniopropion 39.6 41 0.0014 32.6 5.8 45 511-561 138-182 (217)
98 3es4_A Uncharacterized protein 39.5 30 0.001 30.1 4.4 45 511-562 48-92 (116)
99 2q30_A Uncharacterized protein 39.1 1E+02 0.0036 25.1 7.9 67 509-595 37-105 (110)
100 1v70_A Probable antibiotics sy 38.9 48 0.0016 26.7 5.6 47 508-561 31-78 (105)
101 3bcw_A Uncharacterized protein 37.7 25 0.00084 30.9 3.7 45 511-562 55-99 (123)
102 3d0j_A Uncharacterized protein 37.5 53 0.0018 29.5 5.8 62 521-597 46-109 (140)
103 2fqp_A Hypothetical protein BP 33.7 27 0.00091 28.7 3.1 49 508-561 21-70 (97)
104 3d82_A Cupin 2, conserved barr 31.8 77 0.0026 25.5 5.8 50 526-596 51-100 (102)
105 4axo_A EUTQ, ethanolamine util 31.8 98 0.0033 28.1 6.8 31 524-561 83-113 (151)
106 2opk_A Hypothetical protein; p 31.4 49 0.0017 28.1 4.5 34 523-561 51-84 (112)
107 3ibm_A Cupin 2, conserved barr 31.2 61 0.0021 29.7 5.5 46 509-561 60-105 (167)
108 1fi2_A Oxalate oxidase, germin 31.0 87 0.003 29.6 6.7 53 507-561 74-130 (201)
109 3es1_A Cupin 2, conserved barr 29.9 50 0.0017 30.8 4.6 48 507-560 81-128 (172)
110 1zvf_A 3-hydroxyanthranilate 3 29.2 62 0.0021 30.2 4.9 37 524-561 53-91 (176)
111 1lr5_A Auxin binding protein 1 28.6 56 0.0019 29.6 4.7 50 509-561 45-99 (163)
112 2i45_A Hypothetical protein; n 27.9 50 0.0017 27.3 3.9 67 513-599 36-102 (107)
113 2pyt_A Ethanolamine utilizatio 27.5 1.2E+02 0.004 26.7 6.5 45 509-562 61-105 (133)
114 2vqa_A SLL1358 protein, MNCA; 27.3 89 0.0031 32.3 6.6 52 508-561 55-107 (361)
115 3kgz_A Cupin 2 conserved barre 26.6 55 0.0019 29.8 4.2 44 510-560 49-92 (156)
116 3jzv_A Uncharacterized protein 26.5 55 0.0019 30.1 4.2 46 509-561 57-102 (166)
117 2f4p_A Hypothetical protein TM 26.0 1E+02 0.0034 27.4 5.9 47 509-561 52-98 (147)
118 2b8m_A Hypothetical protein MJ 26.0 63 0.0022 27.1 4.3 45 510-561 32-77 (117)
119 1sfn_A Conserved hypothetical 26.0 1.8E+02 0.0061 28.3 8.2 65 509-596 54-118 (246)
120 1sfn_A Conserved hypothetical 25.5 85 0.0029 30.7 5.7 50 506-562 166-216 (246)
121 2ix7_C Myosin-5A; contractIle 25.5 92 0.0031 23.0 4.6 22 630-651 30-51 (58)
122 1j58_A YVRK protein; cupin, de 25.4 92 0.0032 32.6 6.3 52 508-561 82-133 (385)
123 3lag_A Uncharacterized protein 24.7 26 0.0009 29.2 1.4 50 507-560 19-69 (98)
124 1o4t_A Putative oxalate decarb 24.1 78 0.0027 27.5 4.6 46 509-561 61-107 (133)
125 3h7j_A Bacilysin biosynthesis 23.9 1.1E+02 0.0038 29.7 6.2 47 507-560 36-82 (243)
126 4i4a_A Similar to unknown prot 23.8 89 0.003 26.5 4.9 79 509-608 38-120 (128)
127 1vj2_A Novel manganese-contain 23.8 75 0.0026 27.3 4.4 46 509-561 52-97 (126)
128 1n2d_C IQ2 and IQ3 motifs from 23.7 58 0.002 23.0 3.0 20 627-646 27-46 (48)
129 2vqa_A SLL1358 protein, MNCA; 23.6 1.3E+02 0.0043 31.1 6.9 52 507-561 236-289 (361)
130 1y9q_A Transcriptional regulat 23.5 1.1E+02 0.0038 28.2 5.9 45 510-561 109-155 (192)
131 1j58_A YVRK protein; cupin, de 23.5 1.1E+02 0.0037 32.0 6.4 53 507-562 259-313 (385)
132 2q1z_B Anti-sigma factor CHRR, 23.5 1E+02 0.0035 29.1 5.6 65 506-595 126-192 (195)
133 4dck_A Sodium channel protein 23.4 50 0.0017 30.7 3.1 22 627-648 129-150 (168)
134 3bu7_A Gentisate 1,2-dioxygena 23.3 57 0.002 34.7 4.1 49 508-562 126-174 (394)
135 1uij_A Beta subunit of beta co 23.0 80 0.0027 33.8 5.2 53 506-561 50-102 (416)
136 4e2q_A Ureidoglycine aminohydr 23.0 1.2E+02 0.004 30.4 6.1 69 509-597 74-142 (266)
137 2cav_A Protein (canavalin); vi 22.4 89 0.003 33.8 5.4 53 506-561 87-139 (445)
138 3ht1_A REMF protein; cupin fol 22.3 79 0.0027 27.5 4.3 46 511-561 45-90 (145)
139 2ea7_A 7S globulin-1; beta bar 22.2 84 0.0029 33.8 5.2 54 505-561 61-114 (434)
140 1sq4_A GLXB, glyoxylate-induce 22.0 1.1E+02 0.0037 30.6 5.8 49 506-561 192-241 (278)
141 3euj_B Chromosome partition pr 21.8 10 0.00035 33.8 -1.7 43 434-476 3-59 (152)
142 3i7d_A Sugar phosphate isomera 21.5 79 0.0027 28.8 4.2 47 508-561 46-94 (163)
143 2o1q_A Putative acetyl/propion 21.3 97 0.0033 27.6 4.7 51 507-562 46-96 (145)
144 2d5f_A Glycinin A3B4 subunit; 20.3 1.8E+02 0.006 31.9 7.3 61 500-561 362-423 (493)
145 2oa2_A BH2720 protein; 1017534 20.2 1.4E+02 0.0048 26.3 5.6 51 509-560 47-98 (148)
146 3h7j_A Bacilysin biosynthesis 20.2 1.9E+02 0.0063 28.1 6.9 47 509-562 149-196 (243)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=1.3e-34 Score=314.07 Aligned_cols=188 Identities=23% Similarity=0.385 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhC
Q 044081 357 LNKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDTEQWMHHR 436 (707)
Q Consensus 357 ~~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~r 436 (707)
+..|..|+||+++||||+||||++|.+..|++++++++++|++++|+++|.+.+.++....+
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~------------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR------------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 34588999999999999999999999999999999999999999999999999877532110
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCcchHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCc
Q 044081 437 QLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGI 516 (707)
Q Consensus 437 ~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge 516 (707)
+++. .+.+.++++|+|++++++.++.++..++.+.++|||
T Consensus 221 ----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHH------------------------------HHHC--------------------------------
T ss_pred ----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 0000 023568889999999999999999999999999999
Q ss_pred EEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEec
Q 044081 517 FLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLT 596 (707)
Q Consensus 517 ~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~ 596 (707)
.|+++||+++++|+|.+|.++++..+ ...+++|++|||.+++ .+.+++.+++|.++|+++.++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~--------~~~l~~G~~fGe~~~l---------~~~~~~~~~~A~~~~~l~~i~ 323 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN--------PVELGPGAFFGEMALI---------SGEPRSATVSAATTVSLLSLH 323 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC--------eeEECCCCEEeehHHh---------CCCCcceEEEECccEEEEEEe
Confidence 99999999999999999999998654 1378999999999887 234578999999999999999
Q ss_pred HHHHHHHHHHcHHHHHHHHHHHH
Q 044081 597 AEDLTFVASQFRRLHSKQLRHKF 619 (707)
Q Consensus 597 ~~df~~ll~~~p~l~~k~L~~~~ 619 (707)
+++|.++++++|++....++...
T Consensus 324 ~~~f~~ll~~~p~~~~~l~~~l~ 346 (355)
T 3beh_A 324 SADFQMLCSSSPEIAEIFRKTAL 346 (355)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999999999998766555433
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=6.1e-32 Score=270.99 Aligned_cols=204 Identities=23% Similarity=0.382 Sum_probs=177.9
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCcchHHHHHHHHHHHHhhc
Q 044081 409 QRYLQSTSIRMEEWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRHLCLNLVRR 488 (707)
Q Consensus 409 ~~~l~~~~~~~~e~~~k~~~~~~~m~~r~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~lL~~ 488 (707)
++++++++.+.++|+++++++++||+++++|++||.||++|++|.|.++++.|++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999998877 7
Q ss_pred CccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhc
Q 044081 489 VPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWA 568 (707)
Q Consensus 489 vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ 568 (707)
+|+|+++++++++.++..++...|+||++|+++||+++++|||.+|.|+++. + | .. +..+++|++|||.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~-~--~~--~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-D-N--TV--LAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-S-S--CE--EEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE-C-C--eE--EEEecCCCCcCcHHhc--
Confidence 9999999999999999999999999999999999999999999999999985 2 2 22 6899999999999877
Q ss_pred cCCCCCCCCC--CcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhh
Q 044081 569 LDPRPTVILP--SSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRT 628 (707)
Q Consensus 569 ld~~~~~~~~--~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~ 628 (707)
... +++++++|+++|+++.|++++|.+++.++|++..+.++...+..+.+.|.
T Consensus 152 -------~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~ 206 (212)
T 3ukn_A 152 -------KEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLRE 206 (212)
T ss_dssp -------SSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC
T ss_pred -------cCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccccc
Confidence 222 67899999999999999999999999999999988888877766666544
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=9.4e-31 Score=259.46 Aligned_cols=191 Identities=23% Similarity=0.396 Sum_probs=174.8
Q ss_pred hchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCcchHHHHHHHHHHHHhhcCcccc
Q 044081 414 STSIRMEEWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRHLCLNLVRRVPLFH 493 (707)
Q Consensus 414 ~~~~~~~e~~~k~~~~~~~m~~r~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~lL~~vplF~ 493 (707)
+++.+..+|+++++++++||+++++|++||.||++|++|.|. +++.+++++++.||++||.++..+++.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 578889999999999999999999999999999999999997 6889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCC
Q 044081 494 QMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRP 573 (707)
Q Consensus 494 ~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~ 573 (707)
++++++++.++..++...|+||++|+++||+++++|||.+|.|+++..+ |+ . +..+++|++|||.+++
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~-g~--~--~~~l~~G~~fGe~~~~------- 148 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSD-GV--I--ATSLSDGSYFGEICLL------- 148 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTT-SC--E--EEEECTTCEESCHHHH-------
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecC-Ce--E--EEEecCCCEechHHHc-------
Confidence 9999999999999999999999999999999999999999999998733 33 3 6799999999999887
Q ss_pred CCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHH
Q 044081 574 TVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKF 619 (707)
Q Consensus 574 ~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~ 619 (707)
...+++++++|+++|+++.|++++|..+++++|++....++...
T Consensus 149 --~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~ 192 (198)
T 2ptm_A 149 --TRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAV 192 (198)
T ss_dssp --HSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred --CCCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHH
Confidence 23367899999999999999999999999999998766655443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=1.6e-30 Score=258.82 Aligned_cols=189 Identities=24% Similarity=0.399 Sum_probs=171.7
Q ss_pred HhchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCCcchHHHHHHHHHHHHhhcCccc
Q 044081 413 QSTSIRMEEWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATRGVDEEAILHELPFDLRREIKRHLCLNLVRRVPLF 492 (707)
Q Consensus 413 ~~~~~~~~e~~~k~~~~~~~m~~r~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~lL~~vplF 492 (707)
++++.+..+|+++++++++||+++++|++|+.||++|++|.|. +++.+++++++.||++||.++..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 5788999999999999999999999999999999999999997 688999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCC
Q 044081 493 HQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPR 572 (707)
Q Consensus 493 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~ 572 (707)
.++++++++.++..++...|+||++|+++||+++++|||.+|.|+++. .+|++ ..+++|++|||.+++
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~------ 148 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLL------ 148 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHH------
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHh------
Confidence 999999999999999999999999999999999999999999999975 34442 368999999999887
Q ss_pred CCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHH
Q 044081 573 PTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRH 617 (707)
Q Consensus 573 ~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~ 617 (707)
...+++++++|+++|+++.|++++|..++.++|.+....++.
T Consensus 149 ---~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (202)
T 3bpz_A 149 ---TRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV 190 (202)
T ss_dssp ---HCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred ---cCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 233578999999999999999999999999999887555544
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.88 E-value=5.8e-22 Score=200.44 Aligned_cols=211 Identities=16% Similarity=0.172 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccceeecCCccchhhhHHHHHHHHHHHHHHHHhhhceeEEcCCCcccCCCeE
Q 044081 89 LWSKIFLVACLVSVFLDPLFFYLPIVRREEMCIDNGVRTLETTLTIIRILADVFYVIQIFVCFRTAYVAPSSRVFGRGEF 168 (707)
Q Consensus 89 ~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~~f~~di~l~f~tay~~~~s~~~~~G~l 168 (707)
.||.+++++.++++++.++....+ .+ ......+..++.+++++|++|+++||.++
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~----------~~-~~~~~~l~~~d~~~~~iF~~e~~lr~~~~-------------- 63 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQ----------LS-GEYLVRLYLVDLILVIILWADYAYRAYKS-------------- 63 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHH----------HT-TCTTTHHHHHHHHHHHHHHHHHHHHHHTT--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc----------cC-hhhhhHHHHHHHHHHHHHHHHHHHHHccc--------------
Confidence 488888888888888777653211 11 34456788999999999999999999997
Q ss_pred eeChHHHHHHhhhhchHHHHHHhCchhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhHHHhhhhccchhhhh-hhhH
Q 044081 169 VVEPSKIASRCLQRGFWLDFIAALPLPQVLIWVVVPNLEIPAVTMTVSILRILILFQYLPRVFLIFPLTSKIVEA-TGVV 247 (707)
Q Consensus 169 V~d~~~Ia~~Yl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~~~l~q~l~Rl~ri~~l~~~i~~~-~g~~ 247 (707)
..+++|+++ +++|++|++|+........ ........+.+|++|+ .|++|+.+..++..+. ...+
T Consensus 64 -----~~~~~y~~~-~iiDllailP~~~~~~~~~-----~~~~~~~lr~lRllRl----lR~~r~~~~~~~~~~~l~~~~ 128 (223)
T 1orq_C 64 -----GDPAGYVKK-TLYEIPALVPAGLLALIEG-----HLAGLGLFRLVRLLRF----LRILLIISRGSKFLSAIADAA 128 (223)
T ss_dssp -----SCHHHHHHH-HHHHCTTHHHHHHHHHHHH-----HHHTTTCHHHHHHHHH----HHHHHHHHSCSSHHHHHHHHH
T ss_pred -----ccHHHHHHH-hHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 124799998 9999999999975542100 0000112233333322 3444444433322111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCCCCCcccccccccccccccccCC
Q 044081 248 TQKAWAAAAYNLLLYMLASHVSGACWYLLSVERQEACWRSACNLEKPLCELGFFDCRRLEDPQRINWFKSSNVSNICQDG 327 (707)
Q Consensus 248 ~~~~~~~~~~~l~l~~l~~H~~gc~wyl~~~~~~~~cw~~~c~~~~~~c~~~~~~c~~~~~~~~~~W~~~~~l~~~c~~~ 327 (707)
.. .+....+++.++..|+.||++|.+.- ++.+
T Consensus 129 ~~---~~l~~~~~~~~~~~~~~~~~~~~~e~------------------------------~~~~--------------- 160 (223)
T 1orq_C 129 DK---IRFYHLFGAVMLTVLYGAFAIYIVEY------------------------------PDPN--------------- 160 (223)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHTTS------------------------------SSTT---------------
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHh------------------------------CCcC---------------
Confidence 11 12222233444578888888887520 0000
Q ss_pred CCCCCCCCcccccccchhhhhccCCCCchhhHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 044081 328 YNGPDINIGFYQFGIYTDAALNNVTGSSILNKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGN 407 (707)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~ 407 (707)
+....|..|+||+++|+||+||||++|.+..|++++++++++|++++|+++|+
T Consensus 161 ---------------------------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~ 213 (223)
T 1orq_C 161 ---------------------------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGT 213 (223)
T ss_dssp ---------------------------CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11236889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 044081 408 MQRYLQS 414 (707)
Q Consensus 408 ~~~~l~~ 414 (707)
+++.+++
T Consensus 214 i~~~~~~ 220 (223)
T 1orq_C 214 VSNMFQK 220 (223)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=3.1e-19 Score=169.23 Aligned_cols=144 Identities=22% Similarity=0.374 Sum_probs=120.5
Q ss_pred HHHHHhhCCcchHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEe
Q 044081 462 EEAILHELPFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTT 541 (707)
Q Consensus 462 e~~ll~~Lp~~Lr~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~ 541 (707)
.+++++.||++||.++..+++.++++++|+|++++++.++.++..++.+.|++|++|+++||+++++|+|.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred cCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHH
Q 044081 542 NGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHK 618 (707)
Q Consensus 542 ~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~ 618 (707)
+ .. +..+++|++||+.+++ ... ..++.++++|.++|+++.|++++|.+++.++|.+....++..
T Consensus 85 --~--~~--~~~~~~G~~fG~~~~~---~~~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 --D--EV--VAILGKGDVFGDVFWK---EAT----LAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp --T--EE--EEEEETTCEEECCTTT---CSS----CCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred --C--EE--EEEecCCCEeCcHHHh---cCc----ccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 6799999999999877 110 136789999999999999999999999999999887766554
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.80 E-value=3.7e-19 Score=200.68 Aligned_cols=294 Identities=16% Similarity=0.208 Sum_probs=150.5
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHHHHhhhhcccccccccc----ce-------------eecCCccchhhhHHHHHHHHHH
Q 044081 81 YPN-GKTIRLWSKIFLVACLVSVFLDPLFFYLPIVRREE----MC-------------IDNGVRTLETTLTIIRILADVF 142 (707)
Q Consensus 81 ~P~-s~~~~~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~----~c-------------~~~~~~~~~~~~~~~~~~~d~~ 142 (707)
+|. |.....++.+++++.++++++..+.- .|...... .+ .... ......+.+++.+++++
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ie~i~~~i 251 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLET-LPIFRDENEDMHGGGVTFHTYSQSTIGYQQS-TSFTDPFFIVETLCIIW 251 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHTCSTTTTSCCCCHHHHHHHHHSSCCC-TTCCCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhc-ccccccccccccccccccccccccccccccc-chhhhHHHHHHHHHHHH
Confidence 365 45667888888888887777766552 22211100 00 0000 12345788999999999
Q ss_pred HHHHHHhhhceeEEcCCCcccCCCeEeeChHHHHHHhhhh-chHHHHHHhCchhhhhhhhcccCCCchhhHHHHHHHHHH
Q 044081 143 YVIQIFVCFRTAYVAPSSRVFGRGEFVVEPSKIASRCLQR-GFWLDFIAALPLPQVLIWVVVPNLEIPAVTMTVSILRIL 221 (707)
Q Consensus 143 f~~di~l~f~tay~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~~ 221 (707)
|++|++++|.++ | ..++|+++ |+++|+++++|+...++.... ...+.........+|++
T Consensus 252 FtiE~ilR~~~~-----------~--------~k~~Y~ks~wniiDli~iip~~i~l~~~~~-~~~~~~~~~~~~~lrvl 311 (514)
T 2r9r_B 252 FSFEFLVRFFAC-----------P--------SKAGFFTNIMNIIDIVAIIPYYVTIFLTES-NKSVLQFQNVRRVVQIF 311 (514)
T ss_dssp HHHHHHHHHHHS-----------S--------CSSSSTTSHHHHHHHHTTHHHHHHHHHHHT-SCSHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHhC-----------C--------cHHHHHhchhHHHHHHHHHHHHHHHHhhhc-cccchhhhhHHHHHHHH
Confidence 999999999986 1 12489999 899999999998544332111 00010001113344544
Q ss_pred HHHhhhhHHHhhhhccchhhhhhhhHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 044081 222 ILFQYLPRVFLIFPLTSKIVEATGVVTQK--AWAAAAYNLLL-YMLASHVSGACWYLLSVERQEACWRSACNLEKPLCEL 298 (707)
Q Consensus 222 ~l~q~l~Rl~ri~~l~~~i~~~~g~~~~~--~~~~~~~~l~l-~~l~~H~~gc~wyl~~~~~~~~cw~~~c~~~~~~c~~ 298 (707)
|+ .|++|+++|.+.......+ ..+ .....+..+++ .++..+++|+++|.+. .
T Consensus 312 Rl----lRvlRilkL~r~~~~l~~l-~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e--~------------------ 366 (514)
T 2r9r_B 312 RI----MRILRIFKLSRHSKGLQIL-GQTLKASMRELGLLIFFLFIGVILFSSAVYFAE--A------------------ 366 (514)
T ss_dssp HH----HGGGGGGGGGGSCHHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH--T------------------
T ss_pred HH----HHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee--c------------------
Confidence 44 4555555555543221111 111 11122222232 3345778888877542 0
Q ss_pred cccccCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhhccCCCCchhhHHHHHHHHHHHHhcccCCcc
Q 044081 299 GFFDCRRLEDPQRINWFKSSNVSNICQDGYNGPDINIGFYQFGIYTDAALNNVTGSSILNKYFYCFWWGLRNLSSLGQNL 378 (707)
Q Consensus 299 ~~~~c~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~Y~~slyW~l~tlstvG~gd 378 (707)
... .+.+..|..|+||+++||||+||||
T Consensus 367 ----------~~~------------------------------------------~~~F~s~~~a~y~~~vT~TTvGYGD 394 (514)
T 2r9r_B 367 ----------DER------------------------------------------DSQFPSIPDAFWWAVVSMTTVGYGD 394 (514)
T ss_dssp ----------TCT------------------------------------------TCSCSSHHHHHHHHHHHHTTCCCSS
T ss_pred ----------cCC------------------------------------------CccccchhhhhheeeeEEEecccCC
Confidence 000 0112357789999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 044081 379 ATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDTEQWMHHRQLPPELRHSVRKFDQYKWVATR 458 (707)
Q Consensus 379 ~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~r~lp~~L~~rVr~y~~y~w~~~~ 458 (707)
++|.+..+++|+++++++|++++++++|.+.+.++....+.++ ++..+..+.++.-...|.....+ + ...+
T Consensus 395 i~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~l~--~------~~~~ 465 (514)
T 2r9r_B 395 MVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPDLK--K------SRSA 465 (514)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred CCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCCccchhHH--h------cccC
Confidence 9999999999999999999999999999999988877654332 22222223344333344332221 1 1223
Q ss_pred CCCHHHHHhhCCcchHHHHHHHHH
Q 044081 459 GVDEEAILHELPFDLRREIKRHLC 482 (707)
Q Consensus 459 ~~~e~~ll~~Lp~~Lr~~i~~~l~ 482 (707)
...++.-..+|.+.++.++.....
T Consensus 466 ~~~~~s~~~el~e~~~~~~~~~~~ 489 (514)
T 2r9r_B 466 STISKSDYMEIQEGVNNSNEDFRE 489 (514)
T ss_dssp ------------------------
T ss_pred CCcccccccccccccccccccccc
Confidence 344556667777777777665443
No 8
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.73 E-value=2.6e-17 Score=152.53 Aligned_cols=133 Identities=15% Similarity=0.186 Sum_probs=112.9
Q ss_pred HHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEE--EeeecCCCCeee
Q 044081 484 NLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFF--NSSRIGPGDFCG 561 (707)
Q Consensus 484 ~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~--~~~~l~~Gd~fG 561 (707)
++++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+.++.... ++..+++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 568899999999999999999999999999999999999999999999999999986543332221 156899999999
Q ss_pred hhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhc
Q 044081 562 EELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHH 625 (707)
Q Consensus 562 e~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~ 625 (707)
+.+++ ...+++.+++|+++|+++.|++++|.+++.++|.+....++...+..+++
T Consensus 86 ~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~r 140 (142)
T 3mdp_A 86 VSSLI---------KPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLAR 140 (142)
T ss_dssp GGGSS---------TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHc---------CCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHh
Confidence 99887 23457899999999999999999999999999999988888877765554
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.73 E-value=7.8e-17 Score=157.92 Aligned_cols=155 Identities=18% Similarity=0.265 Sum_probs=130.1
Q ss_pred HHHHHhhCCcch----HHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEE
Q 044081 462 EEAILHELPFDL----RREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLD 537 (707)
Q Consensus 462 e~~ll~~Lp~~L----r~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~ 537 (707)
+..+.+.+++++ +.+.......++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 445555566553 3444455667899999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-CCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHH
Q 044081 538 SYTTN-GGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLR 616 (707)
Q Consensus 538 v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~ 616 (707)
++..+ +|++.. +..+++|++||+.+++ ...+++.+++|+++|+++.|++++|..++.++|.++...++
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l---------~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 161 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMI---------DGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLI 161 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHH---------HCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHh---------CCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 98765 555555 6799999999999877 23357899999999999999999999999999999988887
Q ss_pred HHHHHhhhchh
Q 044081 617 HKFRHHSHHWR 627 (707)
Q Consensus 617 ~~~r~~s~~~r 627 (707)
...+..+++.+
T Consensus 162 ~l~~~l~~rl~ 172 (187)
T 3gyd_A 162 RLLQLLTARFR 172 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77665555543
No 10
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.72 E-value=2.8e-17 Score=152.47 Aligned_cols=131 Identities=17% Similarity=0.277 Sum_probs=113.8
Q ss_pred hCCcchHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeee
Q 044081 468 ELPFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFG 547 (707)
Q Consensus 468 ~Lp~~Lr~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~ 547 (707)
++|..+|.+...+...++++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999954 332
Q ss_pred EEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHH
Q 044081 548 FFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSK 613 (707)
Q Consensus 548 ~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k 613 (707)
. +..+++|++||+.+++ ...+++.+++|+++|+++.|++++|.+++.++|.+..+
T Consensus 83 ~--~~~~~~G~~fGe~~~l---------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 K--LCTMGPGKVFGELAIL---------YNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp E--EEEECTTCEESCHHHH---------HCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred E--EEEeCCCCEeccHHHH---------CCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 2 6799999999999877 23357899999999999999999999999999987543
No 11
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.71 E-value=3.1e-16 Score=156.27 Aligned_cols=184 Identities=17% Similarity=0.131 Sum_probs=130.8
Q ss_pred hhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEeeecCCCCeeehhh
Q 044081 486 VRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTT-NGGHFGFFNSSRIGPGDFCGEEL 564 (707)
Q Consensus 486 L~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~ 564 (707)
|+++|+|.+++++.++.++..++.+.|++|++|+++||+++++|||.+|.|+++.. .+|++.. +..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46789999999999999999999999999999999999999999999999999876 4455544 78999999999998
Q ss_pred hhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhh
Q 044081 565 LTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRTWAACFIQAAWRRHKNL 644 (707)
Q Consensus 565 l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~~~~~~iq~a~r~~~~r 644 (707)
++ ...+++.+++|+++|+++.|++++|..++.++|.+....++...+...+..+.........+-.|...-
T Consensus 79 ~~---------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl~~~ 149 (216)
T 4ev0_A 79 LL---------DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNRVAYA 149 (216)
T ss_dssp HH---------HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc---------CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 87 233578999999999999999999999999999998777666555444333333322222332222222
Q ss_pred hhHHhhhcCCC-CCCCCCCCchhhHhhhhHHH-Hhhccc
Q 044081 645 KETAKLKSGSE-PGQPSGTGSFWDHYAESLIA-RTSSGS 681 (707)
Q Consensus 645 ~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 681 (707)
..... +.... .-..++.+++..+|.||=.. ++++.+
T Consensus 150 L~~~~-~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l 187 (216)
T 4ev0_A 150 LLKLL-RQGLGPLFQIRHHELAALAGTSRETVSRVLHAL 187 (216)
T ss_dssp HHHHH-HTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHh-hcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 21111 11111 01123467777788776543 344443
No 12
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.70 E-value=5.1e-17 Score=154.69 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeee
Q 044081 474 RREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSR 553 (707)
Q Consensus 474 r~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~ 553 (707)
+.+.......++|+++|+|.+++++.++.++..++.+.|++|++|+++||+++++|||.+|.|+++...+|++.. +..
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~ 105 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 105 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEE
Confidence 444455667889999999999999999999999999999999999999999999999999999998866777666 779
Q ss_pred cCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHH
Q 044081 554 IGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHS 612 (707)
Q Consensus 554 l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~ 612 (707)
+++|++||+.+++ ...+++.+++|+++|+++.|++++|..++.++|.+..
T Consensus 106 ~~~G~~fGe~~~~---------~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 106 YDNRGSFGELALM---------YNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp EESCCEECGGGGT---------CCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred cCCCCEechHHHH---------cCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 9999999999887 2335789999999999999999999999999998653
No 13
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.70 E-value=1.4e-16 Score=156.17 Aligned_cols=127 Identities=10% Similarity=0.073 Sum_probs=111.0
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeee
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (707)
..+++.+|.|.+++++.++.++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++.+ +..++||++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEEe
Confidence 456788899999999999999999999999999999999999999999999999998764 455555 67999999999
Q ss_pred hh-hhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 562 EE-LLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 562 e~-~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
|. +++ ...++..+++|+++|+++.|++++|.+++.++|.+....++...+
T Consensus 84 e~~~~~---------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 134 (194)
T 3dn7_A 84 DYMAFQ---------KQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK 134 (194)
T ss_dssp CHHHHH---------HTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred ehHHHh---------cCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 87 665 234578999999999999999999999999999988666555444
No 14
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.69 E-value=4.1e-16 Score=155.80 Aligned_cols=187 Identities=11% Similarity=0.044 Sum_probs=132.4
Q ss_pred HHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCe--e
Q 044081 484 NLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDF--C 560 (707)
Q Consensus 484 ~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~--f 560 (707)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..++||++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 57889999999999999999999999999999999999999999999999999998764 455544 689999999 6
Q ss_pred ehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 044081 561 GEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRTWAACFIQAAWRR 640 (707)
Q Consensus 561 Ge~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~~~~~~iq~a~r~ 640 (707)
|+.+++ ...++..+++|+++|+++.|++++|.+++.++|.+....++...+.+.+..+.........+-.|
T Consensus 81 g~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~R 151 (220)
T 3dv8_A 81 SASCIM---------RSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKR 151 (220)
T ss_dssp GGGGGC---------TTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHh---------CCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 888877 23357899999999999999999999999999999877766555433333222222222222222
Q ss_pred HHhhhhHHhhhcCCCCCCCCCCCchhhHhhhhHH-HHhhccc
Q 044081 641 HKNLKETAKLKSGSEPGQPSGTGSFWDHYAESLI-ARTSSGS 681 (707)
Q Consensus 641 ~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 681 (707)
...-......+.+.-.-..++.+++..+|.||=. .++++.+
T Consensus 152 l~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L 193 (220)
T 3dv8_A 152 VASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYF 193 (220)
T ss_dssp HHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 2222221111111111123346787888877655 3344444
No 15
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.68 E-value=2.5e-16 Score=146.89 Aligned_cols=124 Identities=25% Similarity=0.335 Sum_probs=109.7
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeee
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (707)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.. +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 457889999999999999999999999999999999999999999999999999998765 355544 78999999999
Q ss_pred hhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHH
Q 044081 562 EELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRH 617 (707)
Q Consensus 562 e~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~ 617 (707)
+.+++ ...++..+++|+++|+++.|++++|..++.++|.+....++.
T Consensus 82 ~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 128 (149)
T 2pqq_A 82 ELSLF---------DPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRA 128 (149)
T ss_dssp GGGGT---------SCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHH
T ss_pred hHHhc---------CCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHH
Confidence 99887 233578999999999999999999999999999987655544
No 16
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.68 E-value=2e-17 Score=152.77 Aligned_cols=129 Identities=66% Similarity=1.071 Sum_probs=106.9
Q ss_pred HHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehh
Q 044081 484 NLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEE 563 (707)
Q Consensus 484 ~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 563 (707)
++++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++....+|++.++.+..+.+|++|||.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 45789999999999999999999999999999999999999999999999999976555666555223399999999999
Q ss_pred hhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHH
Q 044081 564 LLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHS 612 (707)
Q Consensus 564 ~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~ 612 (707)
++++.+++.+....++++++++|+++|+++.|++++|.+++.++|+++.
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 8622234433212224689999999999999999999999999997643
No 17
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.68 E-value=6.8e-16 Score=144.95 Aligned_cols=127 Identities=14% Similarity=0.216 Sum_probs=109.8
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecC-CeeeEEEeeecCCCCeee
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNG-GHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fG 561 (707)
.++++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+. |++.. +..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 4678999999999999999999999999999999999999999999999999999987643 44444 68999999999
Q ss_pred hhhhhhccCCCCCCCCCC-cceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 562 EELLTWALDPRPTVILPS-STRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 562 e~~l~~~ld~~~~~~~~~-~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
+.+++ ...+ +..+++|+++|+++.|++++|..++.++|.+....++...+
T Consensus 89 ~~~~~---------~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 89 EAMMF---------MDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGGG---------SSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHhhc---------cCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 99887 2223 78999999999999999999999999999987766665444
No 18
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.67 E-value=3e-16 Score=157.82 Aligned_cols=189 Identities=17% Similarity=0.183 Sum_probs=136.3
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeee
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (707)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 356899999999999999999999999999999999999999999999999999998765 455555 78999999999
Q ss_pred hhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 044081 562 EELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRTWAACFIQAAWRRH 641 (707)
Q Consensus 562 e~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~~~~~~iq~a~r~~ 641 (707)
+.+++ ...++..+++|+++|+++.|++++|.+++.++|.+....++...+...+.-+.........+-.|.
T Consensus 83 ~~~~~---------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl 153 (227)
T 3d0s_A 83 ELSIF---------DPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRV 153 (227)
T ss_dssp CHHHH---------SCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred eHHHc---------CCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99887 233578999999999999999999999999999998777766554333332222222222222222
Q ss_pred HhhhhHHhhhcCCC---C----CCCCCCCchhhHhhhhHHH-Hhhcccc
Q 044081 642 KNLKETAKLKSGSE---P----GQPSGTGSFWDHYAESLIA-RTSSGSF 682 (707)
Q Consensus 642 ~~r~~~~~~~~~e~---~----~~~~~~~~~~~~~~~~~~~-~~~~~~~ 682 (707)
..-......+.+.. . -..++.+++..+|.||=.. ++++.++
T Consensus 154 ~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 202 (227)
T 3d0s_A 154 AKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFA 202 (227)
T ss_dssp HHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 22221111111111 0 1123467888888887543 3555543
No 19
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.66 E-value=5.8e-16 Score=156.83 Aligned_cols=128 Identities=15% Similarity=0.151 Sum_probs=113.7
Q ss_pred HHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCee
Q 044081 482 CLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFC 560 (707)
Q Consensus 482 ~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~f 560 (707)
..++|+++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCEe
Confidence 4578999999999999999999999999999999999999999999999999999998764 455555 7899999999
Q ss_pred ehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 561 GEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 561 Ge~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
|+.+++ ...++..+++|+++|+++.|++++|..++.++|.+....++...+
T Consensus 87 G~~~~~---------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 137 (237)
T 3fx3_A 87 GEAVAL---------RNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG 137 (237)
T ss_dssp CHHHHH---------HTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHHh---------cCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999887 223578999999999999999999999999999998777665554
No 20
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.66 E-value=1.1e-15 Score=141.09 Aligned_cols=122 Identities=27% Similarity=0.429 Sum_probs=108.2
Q ss_pred HHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 482 CLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 482 ~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
..++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ + ..+++|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3567999999999999999999999999999999999999999999999999999997554 1 3789999999
Q ss_pred hhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 562 EELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 562 e~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
+.+++ ...++..+++|+++|+++.|++++|.+++.++|.+....++...+
T Consensus 81 ~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 81 EMALI---------SGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHHH---------HCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ehHhc---------cCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99887 223568999999999999999999999999999988777665554
No 21
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.65 E-value=1.3e-15 Score=153.69 Aligned_cols=128 Identities=17% Similarity=0.221 Sum_probs=112.3
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeee
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (707)
.++|+++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999998764 455555 68999999999
Q ss_pred hhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHH
Q 044081 562 EELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRH 621 (707)
Q Consensus 562 e~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~ 621 (707)
+.+++ ...++..+++|+++|+++.|++++|..++.++|.+....++...+.
T Consensus 83 ~~~~~---------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 133 (231)
T 3e97_A 83 ETAVL---------AHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARR 133 (231)
T ss_dssp TTTTT---------CCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred eHHHh---------CCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99887 2345789999999999999999999999999999887766655543
No 22
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.65 E-value=9e-16 Score=154.07 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=114.3
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeee
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (707)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++++|+|.+|.|+++..+ +|++.. +..++||++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 467899999999999999999999999999999999999999999999999999998654 455544 68999999999
Q ss_pred hhhhhhccCCCCCCCCCC-cceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhc
Q 044081 562 EELLTWALDPRPTVILPS-STRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHH 625 (707)
Q Consensus 562 e~~l~~~ld~~~~~~~~~-~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~ 625 (707)
+.+++ ...+ +..+++|+++|+++.|++++|..++.++|.+....++...+...+.
T Consensus 86 ~~~~~---------~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 141 (227)
T 3dkw_A 86 EAMMF---------MDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQR 141 (227)
T ss_dssp CTTTT---------TTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHH
T ss_pred eHHhc---------CCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 99876 2224 7899999999999999999999999999999877776665544333
No 23
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.64 E-value=4.5e-15 Score=149.23 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=102.4
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeee
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (707)
...+++.++|.+++++.++.++..++.+.|++|++|+++||+++++|+|.+|.|+++..+ +|++.+ +..++||++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 456888999999999999999999999999999999999999999999999999998754 455555 78999999999
Q ss_pred hhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHc-----HHHHHHHHHHHHHH
Q 044081 562 EELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQF-----RRLHSKQLRHKFRH 621 (707)
Q Consensus 562 e~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~-----p~l~~k~L~~~~r~ 621 (707)
+.+++ . ..++++.+++|+++|+++.|++++|.+++.++ |++....++...+.
T Consensus 88 ~~~~~---~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~ 144 (230)
T 3iwz_A 88 EMGLF---I-----ESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKR 144 (230)
T ss_dssp CGGGT---S-----CCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHH
T ss_pred ehhhh---c-----CCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHH
Confidence 99887 1 22357899999999999999999999999999 98877766655543
No 24
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.63 E-value=3e-15 Score=151.03 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=130.0
Q ss_pred cCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhh
Q 044081 488 RVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLT 566 (707)
Q Consensus 488 ~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~ 566 (707)
.+|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..++||++||+.+++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPYF 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehhh
Confidence 5799999999999999999999999999999999999999999999999998654 355555 6899999999999887
Q ss_pred hccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhhhh
Q 044081 567 WALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRTWAACFIQAAWRRHKNLKE 646 (707)
Q Consensus 567 ~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~~~~~~iq~a~r~~~~r~~ 646 (707)
...++..+++|+++|+++.|++++|.+++.++|.+....++...+...+..+.........+-.|...-..
T Consensus 92 ---------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~ 162 (232)
T 2gau_A 92 ---------AEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGRLAETLL 162 (232)
T ss_dssp ---------HTSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ---------CCCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22357899999999999999999999999999999877776655544333333222222223223222221
Q ss_pred HHhhhcCC--CC----CCCCCCCchhhHhhhhHHH-Hhhccc
Q 044081 647 TAKLKSGS--EP----GQPSGTGSFWDHYAESLIA-RTSSGS 681 (707)
Q Consensus 647 ~~~~~~~e--~~----~~~~~~~~~~~~~~~~~~~-~~~~~~ 681 (707)
....+.++ +. -..++.+++..+|.||=.. ++++.+
T Consensus 163 ~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l 204 (232)
T 2gau_A 163 ILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTF 204 (232)
T ss_dssp HHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHH
Confidence 21112221 00 1123357788888777653 344444
No 25
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.62 E-value=3.4e-15 Score=141.04 Aligned_cols=118 Identities=19% Similarity=0.286 Sum_probs=105.3
Q ss_pred HHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCC
Q 044081 479 RHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGD 558 (707)
Q Consensus 479 ~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 558 (707)
+....++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+ . +..+++|+
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~--~--~~~~~~G~ 106 (154)
T 3pna_A 33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--W--ATSVGEGG 106 (154)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE--E--EEEECTTC
T ss_pred HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE--E--EEEecCCC
Confidence 34456789999999999999999999999999999999999999999999999999999986 333 2 57899999
Q ss_pred eeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHH
Q 044081 559 FCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLH 611 (707)
Q Consensus 559 ~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~ 611 (707)
+||+.+++ ...++.++++|+++|+++.|++++|.+++.++|.+.
T Consensus 107 ~fGe~~~~---------~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~ 150 (154)
T 3pna_A 107 SFGELALI---------YGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRK 150 (154)
T ss_dssp EECCHHHH---------HCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC
T ss_pred EeeehHhh---------cCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHH
Confidence 99999887 233568999999999999999999999999999764
No 26
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.61 E-value=5.3e-15 Score=155.34 Aligned_cols=141 Identities=14% Similarity=0.223 Sum_probs=122.9
Q ss_pred HHHhhCCcchHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecC
Q 044081 464 AILHELPFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNG 543 (707)
Q Consensus 464 ~ll~~Lp~~Lr~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~ 543 (707)
.-..++|...|.+...++..++++++++|++++++.++.++..++.+.|++|++|+++||+++.+|||++|.|++.. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-~- 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-E- 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE-T-
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE-C-
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999954 3
Q ss_pred CeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHH
Q 044081 544 GHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKF 619 (707)
Q Consensus 544 g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~ 619 (707)
|. . +..+.+|++|||.+++ ...++++|++|.++|+++.|++++|..++.++|..........+
T Consensus 97 g~--~--~~~~~~G~~fGe~~ll---------~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l 159 (299)
T 3shr_A 97 GV--K--LCTMGPGKVFGELAIL---------YNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFL 159 (299)
T ss_dssp TE--E--EEEECTTCEESCSGGG---------TTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CE--E--EEEeCCCCeeeHhHHh---------cCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHH
Confidence 32 2 6799999999999887 33467899999999999999999999999999976554444433
No 27
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.61 E-value=1.6e-15 Score=153.51 Aligned_cols=130 Identities=15% Similarity=0.219 Sum_probs=112.6
Q ss_pred HHHHHhhcCccccCCCHHHHHHHHhc--CEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCC
Q 044081 481 LCLNLVRRVPLFHQMDETILDVICER--LKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPG 557 (707)
Q Consensus 481 l~~~lL~~vplF~~ls~~~l~~L~~~--l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~G 557 (707)
.....++++|+|..++++.++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G 92 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAP 92 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESS
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCC
Confidence 34567899999999999999999998 999999999999999999999999999999998653 455555 6799999
Q ss_pred CeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 558 DFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 558 d~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
++||+.+++ + +.+++..+++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 93 ~~fG~~~~~---~-----~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 147 (232)
T 1zyb_A 93 YLIEPQSLF---G-----MNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN 147 (232)
T ss_dssp EEECGGGGS---S-----SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred CeeeehHHh---C-----CCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999887 1 122378999999999999999999999999999988776665444
No 28
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.60 E-value=9.6e-15 Score=144.69 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=102.4
Q ss_pred ccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhhc
Q 044081 490 PLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTWA 568 (707)
Q Consensus 490 plF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ 568 (707)
++++.++++.++.++..++.+.|++|++|+++||+++++|+|.+|.|+++..+ +|++.+ +..++||++||+.+++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~-- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF-- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTT--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHh--
Confidence 56777999999999999999999999999999999999999999999998764 455555 6899999999999877
Q ss_pred cCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHH
Q 044081 569 LDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRH 621 (707)
Q Consensus 569 ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~ 621 (707)
. ..+++..+++|+++|+++.+++++|..++.++|++....++...+.
T Consensus 78 -~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 124 (210)
T 3ryp_A 78 -E-----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR 124 (210)
T ss_dssp -S-----TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred -c-----CCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 1 2225789999999999999999999999999999887766655543
No 29
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.59 E-value=1.1e-14 Score=155.46 Aligned_cols=128 Identities=17% Similarity=0.263 Sum_probs=112.7
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
.++|+++|+|++++++.++.++..++.+.|++|++|+++||+++++|||.+|.|+++..+.+++.. +..+++|++|||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~G~~fGe 89 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAI--IARALPGMIVGE 89 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEE--EEEECTTCEESH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEE--EEEecCCCEeeH
Confidence 467899999999999999999999999999999999999999999999999999998775544444 689999999999
Q ss_pred hhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHh
Q 044081 563 ELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHH 622 (707)
Q Consensus 563 ~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~ 622 (707)
.+++ ...+++.+++|+++|+++.|++++|..++ ++|.+..+.++......
T Consensus 90 ~~l~---------~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~ 139 (333)
T 4ava_A 90 IALL---------RDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRL 139 (333)
T ss_dssp HHHH---------HTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHH
T ss_pred HHhc---------CCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence 9887 23467899999999999999999999999 99998877766555433
No 30
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.58 E-value=7.2e-15 Score=147.42 Aligned_cols=177 Identities=10% Similarity=-0.009 Sum_probs=129.9
Q ss_pred HhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhh
Q 044081 485 LVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEEL 564 (707)
Q Consensus 485 lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ 564 (707)
+|+++|+|..++++.++.++..++.+.|++|++|+++||+++++|+|.+|.|+++...+|++.+ +..++||++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 3678999999999999999999999999999999999999999999999999997556676665 78999999999
Q ss_pred hhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhh
Q 044081 565 LTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRTWAACFIQAAWRRHKNL 644 (707)
Q Consensus 565 l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~~~~~~iq~a~r~~~~r 644 (707)
. +++.+++|+++|+++.|++++|.+++.++|.+....++...+.+.+..+.........+- .|
T Consensus 76 -~------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~----~R 138 (222)
T 1ft9_A 76 -M------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIK----QR 138 (222)
T ss_dssp -S------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHTHHHH----HH
T ss_pred -C------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HH
Confidence 2 457899999999999999999999999999988777766555433332222222222222 23
Q ss_pred hhHHhhhcCCCCC----C-------CCCCCchhhHhhhhHHH-Hhhccccc
Q 044081 645 KETAKLKSGSEPG----Q-------PSGTGSFWDHYAESLIA-RTSSGSFK 683 (707)
Q Consensus 645 ~~~~~~~~~e~~~----~-------~~~~~~~~~~~~~~~~~-~~~~~~~~ 683 (707)
-....++.++... . .++.+++..+|.||=.. ++++.+++
T Consensus 139 l~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 139 IAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp HHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3333333222211 1 12356788888877543 45555543
No 31
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=139.85 Aligned_cols=124 Identities=11% Similarity=0.188 Sum_probs=105.2
Q ss_pred CcchHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEec-CCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeE
Q 044081 470 PFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGT-KGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGF 548 (707)
Q Consensus 470 p~~Lr~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~-~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~ 548 (707)
||..|.+.......++++++++|..++++.++.++..++.+.|+ +|++|+++||+++.+|||.+|.|+++.. +|+.
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHP-DGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECS-SSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcC-CCcE--
Confidence 45555555555567789999999999999999999999999999 9999999999999999999999999863 3432
Q ss_pred EEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEE-EEcceEEEEEecHHHHHHHHHHcH
Q 044081 549 FNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSV-KAITEVEAFTLTAEDLTFVASQFR 608 (707)
Q Consensus 549 ~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv-~Alt~~~ll~L~~~df~~ll~~~p 608 (707)
..+.+|++||+.+++ ...++..++ +|+++|+++.|++++|..++.+++
T Consensus 79 ---~~l~~G~~fG~~~~~---------~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPTL---------DKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSSS---------CCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHhc---------CCCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 358899999999876 223456788 999999999999999999987765
No 32
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.57 E-value=3.3e-14 Score=140.47 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=101.5
Q ss_pred CCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhhccCCCC
Q 044081 495 MDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTWALDPRP 573 (707)
Q Consensus 495 ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~ 573 (707)
|+++.++.++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++.+ +..+++|++||+.+++ .+.+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~---~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLF---EKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTC---C---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHh---cCCC
Confidence 688999999999999999999999999999999999999999998764 455555 7899999999999876 1110
Q ss_pred CCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHh
Q 044081 574 TVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHH 622 (707)
Q Consensus 574 ~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~ 622 (707)
..+++..+++|+++|+++.|++++|.+++.++|.+....++...+..
T Consensus 76 --~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~ 122 (207)
T 2oz6_A 76 --SEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRL 122 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred --CCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 00057899999999999999999999999999999877766555433
No 33
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.57 E-value=7.8e-15 Score=146.83 Aligned_cols=181 Identities=7% Similarity=0.010 Sum_probs=132.2
Q ss_pred HHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehh
Q 044081 484 NLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEE 563 (707)
Q Consensus 484 ~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 563 (707)
.+++++|+|..++++.++.++..++.+.|++|++|+++||+++++|||.+|.|+++...+|++.+ +..++||++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 35788999999999999999999999999999999999999999999999999997556666665 789999999998
Q ss_pred hhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHh
Q 044081 564 LLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRTWAACFIQAAWRRHKN 643 (707)
Q Consensus 564 ~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~~~~~~iq~a~r~~~~ 643 (707)
- +..+++|+++|+++.|++++|.+++.++|++....++...+...+..+.........+-.|...
T Consensus 81 --~-------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rl~~ 145 (220)
T 2fmy_A 81 --H-------------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLAE 145 (220)
T ss_dssp --C-------------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred --c-------------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 3689999999999999999999999999999877776655544333333333222333333333
Q ss_pred hhhHHhhhcCCCC-------CCCCCCCchhhHhhhhHHH-Hhhcccc
Q 044081 644 LKETAKLKSGSEP-------GQPSGTGSFWDHYAESLIA-RTSSGSF 682 (707)
Q Consensus 644 r~~~~~~~~~e~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~ 682 (707)
-......+.+... -..++.+++..+|.||=.. ++++.++
T Consensus 146 ~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 192 (220)
T 2fmy_A 146 FLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFK 192 (220)
T ss_dssp HHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2222222222111 1223467888888877653 3444443
No 34
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.55 E-value=4.4e-14 Score=147.46 Aligned_cols=127 Identities=18% Similarity=0.320 Sum_probs=110.3
Q ss_pred HHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecC-C-eeeEEEeeecCCCC
Q 044081 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNG-G-HFGFFNSSRIGPGD 558 (707)
Q Consensus 481 l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~-g-~~~~~~~~~l~~Gd 558 (707)
+...+++++++|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++.... | ++.. +..+++|+
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G~ 231 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPSD 231 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTTC
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCCC
Confidence 445677889999999999999999999999999999999999999999999999999986542 3 2333 78999999
Q ss_pred eeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHH
Q 044081 559 FCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHK 618 (707)
Q Consensus 559 ~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~ 618 (707)
+|||.+++ ...+++++++|.++|+++.|++++|..++.++|++..+.++..
T Consensus 232 ~fGe~~ll---------~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 232 YFGEIALL---------MNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp EECSGGGT---------CCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred EecHHHHc---------CCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 99999887 2345789999999999999999999999999998876655543
No 35
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.55 E-value=1.8e-14 Score=136.39 Aligned_cols=64 Identities=11% Similarity=0.302 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q 044081 358 NKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEE 421 (707)
Q Consensus 358 ~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e 421 (707)
..|..|+||++.|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+.+...+.++
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~ 146 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999877654433
No 36
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.55 E-value=2.5e-14 Score=142.64 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=99.1
Q ss_pred CccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhh
Q 044081 489 VPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTW 567 (707)
Q Consensus 489 vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~ 567 (707)
-|.|+..++...+.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~- 80 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIF- 80 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTT-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHh-
Confidence 478888999999999999999999999999999999999999999999998764 455555 7899999999999876
Q ss_pred ccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 568 ALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 568 ~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
. ..+++..+++|+++|+++.|++++|.+++.++|.+....++...+
T Consensus 81 --~-----~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 126 (213)
T 1o5l_A 81 --S-----SEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE 126 (213)
T ss_dssp --S-----SSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred --c-----CCCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 1 122578999999999999999999999999999998777665554
No 37
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.54 E-value=5.6e-14 Score=144.83 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=99.9
Q ss_pred cCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhhccCC
Q 044081 493 HQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTWALDP 571 (707)
Q Consensus 493 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~ 571 (707)
..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..++||++||+.+++ .
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~---~- 128 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---E- 128 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTT---S-
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHh---C-
Confidence 45899999999999999999999999999999999999999999998764 455544 7899999999999877 1
Q ss_pred CCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 572 RPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 572 ~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
..++++.+++|+++|+++.|++++|.+++.++|.+....++...+
T Consensus 129 ----~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~ 173 (260)
T 3kcc_A 129 ----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 173 (260)
T ss_dssp ----TTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred ----CCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 222578999999999999999999999999999988766665554
No 38
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.54 E-value=1.9e-14 Score=151.11 Aligned_cols=129 Identities=19% Similarity=0.348 Sum_probs=113.5
Q ss_pred HHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec--CCeeeEEEeeecCCC
Q 044081 480 HLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN--GGHFGFFNSSRIGPG 557 (707)
Q Consensus 480 ~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~--~g~~~~~~~~~l~~G 557 (707)
.....+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.. +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678899999999999999999999999999999999999999999999999999998775 454444 7899999
Q ss_pred CeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHH
Q 044081 558 DFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKF 619 (707)
Q Consensus 558 d~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~ 619 (707)
++|||.+++ ...+++++++|.++|+++.|++++|.+++.++|.+..+.++...
T Consensus 231 ~~fGe~~ll---------~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~ 283 (299)
T 3shr_A 231 DWFGEKALQ---------GEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAE 283 (299)
T ss_dssp CEECGGGGS---------SSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred CEeChHHHh---------CCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHh
Confidence 999999887 33467899999999999999999999999999988766655443
No 39
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.6e-14 Score=143.06 Aligned_cols=123 Identities=18% Similarity=0.224 Sum_probs=107.3
Q ss_pred HHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 482 CLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 482 ~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
..++|+++|+|++++++.++.++..++.+.|++|++|+++||+++++|+|.+|.|+++. + ++. +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-~-~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-N-DNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES-T-TSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-C-CEE----EEecCCCCeee
Confidence 35688999999999999999999999999999999999999999999999999999985 2 222 57899999999
Q ss_pred hhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHH
Q 044081 562 EELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKF 619 (707)
Q Consensus 562 e~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~ 619 (707)
|.+++ ...+++++++|.++|+++.|++++|..++.++|..........+
T Consensus 79 e~~l~---------~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 127 (246)
T 3of1_A 79 ELALM---------YNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLL 127 (246)
T ss_dssp HHHHH---------HTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHH
T ss_pred hhHHh---------cCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHH
Confidence 99887 23467899999999999999999999999999976655444433
No 40
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=6.1e-14 Score=142.16 Aligned_cols=117 Identities=17% Similarity=0.245 Sum_probs=105.5
Q ss_pred HHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCee
Q 044081 481 LCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFC 560 (707)
Q Consensus 481 l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 560 (707)
+...+++++++|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.++++..+++ . +..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCcc
Confidence 3456678899999999999999999999999999999999999999999999999999876544 2 6799999999
Q ss_pred ehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHH
Q 044081 561 GEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLH 611 (707)
Q Consensus 561 Ge~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~ 611 (707)
||.+++ ...+++++++|.++|+++.|++++|.+++..+|++.
T Consensus 197 Ge~~~~---------~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 197 GEVALL---------NDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp CHHHHH---------HTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred cHHHHh---------CCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 999887 234678999999999999999999999999999764
No 41
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=9.6e-14 Score=144.87 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=113.6
Q ss_pred HHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCC
Q 044081 477 IKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGP 556 (707)
Q Consensus 477 i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~ 556 (707)
-..+...++|+++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|++|.|+++. + |. . +..+++
T Consensus 32 ~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~-g~--~--~~~l~~ 105 (291)
T 2qcs_B 32 KTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-N-NE--W--ATSVGE 105 (291)
T ss_dssp HHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-T-TE--E--EEEECT
T ss_pred HHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-C-Ce--E--EEEcCC
Confidence 3345667889999999999999999999999999999999999999999999999999999986 3 32 2 679999
Q ss_pred CCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 557 GDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 557 Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
|++|||.+++ ...++.++++|.++|+++.|++++|..++.++|.+..+.+...++
T Consensus 106 G~~fGe~~l~---------~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 106 GGSFGELALI---------YGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp TCEECGGGGT---------CCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHh---------cCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999887 334678999999999999999999999999999987776665554
No 42
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.51 E-value=9.7e-14 Score=153.12 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeee
Q 044081 474 RREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSR 553 (707)
Q Consensus 474 r~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~ 553 (707)
|.+-......++|+++++|++++++.++.++..++.+.|++|++|+++||+++.+|||++|.|+++...+|++.. +..
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~ 212 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 212 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEE
Confidence 344455667889999999999999999999999999999999999999999999999999999998876676665 679
Q ss_pred cCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHH
Q 044081 554 IGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSK 613 (707)
Q Consensus 554 l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k 613 (707)
+.+|++|||.+++ ...++.++++|+++|+++.|++++|..++.++|.....
T Consensus 213 l~~G~~fGe~all---------~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~ 263 (416)
T 3tnp_B 213 YDNRGSFGELALM---------YNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 263 (416)
T ss_dssp EESCCEECGGGGT---------SCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSS
T ss_pred ecCCCEEeeHHHh---------cCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHH
Confidence 9999999999887 23467899999999999999999999999999987543
No 43
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.49 E-value=9.7e-14 Score=141.84 Aligned_cols=123 Identities=12% Similarity=0.061 Sum_probs=105.0
Q ss_pred hhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhh
Q 044081 486 VRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEEL 564 (707)
Q Consensus 486 L~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ 564 (707)
+.+...+..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..++||++||+
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~-- 86 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK-- 86 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC--
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee--
Confidence 344444588999999999999999999999999999999999999999999998764 455555 789999999999
Q ss_pred hhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHh
Q 044081 565 LTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHH 622 (707)
Q Consensus 565 l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~ 622 (707)
++ ... +..+++|+++|+++.|++++|..++.++|++....++...+..
T Consensus 87 ~l---------~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 134 (250)
T 3e6c_C 87 LY---------PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKV 134 (250)
T ss_dssp CS---------CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred ec---------CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 44 233 6899999999999999999999999999998877766655533
No 44
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.49 E-value=6.4e-14 Score=152.77 Aligned_cols=132 Identities=16% Similarity=0.286 Sum_probs=112.5
Q ss_pred HHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCe
Q 044081 480 HLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDF 559 (707)
Q Consensus 480 ~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~ 559 (707)
.++..+++++++|..++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+.++.....+..+++|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 34567788999999999999999999999999999999999999999999999999999876432222223689999999
Q ss_pred eehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 560 CGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 560 fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
|||.+++ ...+++++|+|+++|+++.|++++|..++..+|++..+.+++.-.
T Consensus 324 fGe~all---------~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~ 375 (381)
T 4din_B 324 FGEIALL---------LNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNS 375 (381)
T ss_dssp ECTTGGG---------SCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHH
T ss_pred echHHHh---------CCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999988 334678999999999999999999999999999876665554433
No 45
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.47 E-value=6.5e-14 Score=130.04 Aligned_cols=92 Identities=11% Similarity=0.223 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCCC
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEWRIKRTDTEQWMHHRQLP 439 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~r~lp 439 (707)
|..|+||++.|+|||||||++|.|..|++++++++++|++++|+++|.+++.+.......++.+...+..+..++..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 77899999999999999999999999999999999999999999999999999876555444443333333444555677
Q ss_pred HHHHHHHHHHHH
Q 044081 440 PELRHSVRKFDQ 451 (707)
Q Consensus 440 ~~L~~rVr~y~~ 451 (707)
++.+..+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 777777777654
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.46 E-value=2.5e-13 Score=148.13 Aligned_cols=131 Identities=17% Similarity=0.246 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeec
Q 044081 475 REIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRI 554 (707)
Q Consensus 475 ~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l 554 (707)
.+-.+....+.++++++|++++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+ . +..+
T Consensus 121 s~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~--~--v~~l 194 (381)
T 4din_B 121 DYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGE--W--VTNI 194 (381)
T ss_dssp CHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTE--E--EEEE
T ss_pred CHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCe--E--eeeC
Confidence 333445567889999999999999999999999999999999999999999999999999999985 232 2 5689
Q ss_pred CCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 555 GPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 555 ~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
++|++|||.+++ ...++.++++|+++|+++.|++++|..++.++|.+..+.+...++
T Consensus 195 ~~G~~fGe~all---------~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 195 SEGGSFGELALI---------YGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp ESSCCBCGGGGT---------SCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEchHHh---------cCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 999999999887 234678999999999999999999999999999887666655444
No 47
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.46 E-value=3.8e-13 Score=150.35 Aligned_cols=136 Identities=18% Similarity=0.201 Sum_probs=118.1
Q ss_pred hCCcchHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCe-e
Q 044081 468 ELPFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGH-F 546 (707)
Q Consensus 468 ~Lp~~Lr~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~-~ 546 (707)
..|+..|.+.......+.++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+.++ +
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 357788888888888999999999999999999999999999999999999999999999999999999998764332 2
Q ss_pred eEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHH
Q 044081 547 GFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSK 613 (707)
Q Consensus 547 ~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k 613 (707)
....+..+++|++||+.+ + ...+++++++|+++|+++.|++++|..++.++|.+...
T Consensus 106 ~~~~~~~~~~G~~fGe~~-l---------~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~ 162 (469)
T 1o7f_A 106 DAVTICTLGIGTAFGESI-L---------DNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAG 162 (469)
T ss_dssp GCEEEEEECTTCEECGGG-G---------GTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTT
T ss_pred cceEEEEccCCCCcchhh-h---------CCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHH
Confidence 112278999999999998 6 23467899999999999999999999999999976533
No 48
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.45 E-value=6.6e-13 Score=125.09 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----chHHHHHHHHHHHHH
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQR------YLQS----TSIRMEEWRIKRTDT 429 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~------~l~~----~~~~~~e~~~k~~~~ 429 (707)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.+|++.. +.+. .+....+.+++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667899999999999999999999999999999999999999999999987 3332 244555667788999
Q ss_pred HHHHHhCCCCHHHHHH
Q 044081 430 EQWMHHRQLPPELRHS 445 (707)
Q Consensus 430 ~~~m~~r~lp~~L~~r 445 (707)
+++|++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 49
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.45 E-value=4.8e-13 Score=135.70 Aligned_cols=181 Identities=13% Similarity=0.059 Sum_probs=121.5
Q ss_pred cCCCHHHHHHHHh--cCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhhcc
Q 044081 493 HQMDETILDVICE--RLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTWAL 569 (707)
Q Consensus 493 ~~ls~~~l~~L~~--~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l 569 (707)
++++++.++.+.. .++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++.+ +..+ +|++||+.+++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhh---
Confidence 3678889998874 5899999999999999999999999999999998754 455555 5678 99999999876
Q ss_pred CCCCCCCCCC-cceEEEEc-ceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhhhhH
Q 044081 570 DPRPTVILPS-STRSVKAI-TEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFRHHSHHWRTWAACFIQAAWRRHKNLKET 647 (707)
Q Consensus 570 d~~~~~~~~~-~~~tv~Al-t~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r~~s~~~r~~~~~~iq~a~r~~~~r~~~ 647 (707)
+.. ++ +.+++.|+ ++|+++.|++++|..++.++|.+....++...+......+.........+-.|...-...
T Consensus 76 ~~~-----~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rla~~L~~ 150 (238)
T 2bgc_A 76 DTE-----TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLI 150 (238)
T ss_dssp TTC-----CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cCC-----CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 111 11 25788888 599999999999999999999998777666554333332222222222222222222221
Q ss_pred HhhhcCCC------CC--CCCCCCchhhHhhhh--HHHHhhcccccc
Q 044081 648 AKLKSGSE------PG--QPSGTGSFWDHYAES--LIARTSSGSFKQ 684 (707)
Q Consensus 648 ~~~~~~e~------~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 684 (707)
...+.+.. -. ..++.+++..+|.|| -..++++.+++.
T Consensus 151 l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 151 LTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp HHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 11111111 11 234467888888888 556677666443
No 50
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.43 E-value=1.4e-12 Score=132.77 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCE---EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhhccCCC
Q 044081 497 ETILDVICERLK---PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTWALDPR 572 (707)
Q Consensus 497 ~~~l~~L~~~l~---~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~ 572 (707)
+++++.++.... .+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..++||++||+.+++ ++.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~---~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLL---TGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHH---SSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHh---CCC
Confidence 677888888888 9999999999999999999999999999998764 455555 7899999999999887 222
Q ss_pred CCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 573 PTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 573 ~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
+ .++..+++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 105 ~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 148 (243)
T 3la7_A 105 K----SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS 148 (243)
T ss_dssp C----SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C----CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 1 0245899999999999999999999999999988777665444
No 51
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.42 E-value=4.8e-13 Score=147.54 Aligned_cols=120 Identities=12% Similarity=0.198 Sum_probs=104.4
Q ss_pred HHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecC-------CeeeEEEeeecC
Q 044081 483 LNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNG-------GHFGFFNSSRIG 555 (707)
Q Consensus 483 ~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~-------g~~~~~~~~~l~ 555 (707)
..+++++++|..++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+. |++.. +..++
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~l~ 343 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IARCF 343 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEEEC
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEEeC
Confidence 4567888999999999999999999999999999999999999999999999999986644 44444 78999
Q ss_pred CCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHHHH
Q 044081 556 PGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLHSK 613 (707)
Q Consensus 556 ~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k 613 (707)
+|++|||.+++ ...+++++|+|+++|+++.|++++|..++..+|++..+
T Consensus 344 ~G~~fGE~all---------~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~ 392 (416)
T 3tnp_B 344 RGQYFGELALV---------TNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKR 392 (416)
T ss_dssp TTCEESGGGGT---------CCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTC
T ss_pred CCCEecHHHHh---------CCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHH
Confidence 99999999887 33467999999999999999999999999999987543
No 52
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.41 E-value=8.2e-13 Score=147.60 Aligned_cols=122 Identities=12% Similarity=0.162 Sum_probs=104.0
Q ss_pred HHHHHHhhcCccccCCCHHHHHHHHhcCEE-EEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCC
Q 044081 480 HLCLNLVRRVPLFHQMDETILDVICERLKP-VLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGD 558 (707)
Q Consensus 480 ~l~~~lL~~vplF~~ls~~~l~~L~~~l~~-~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 558 (707)
....+.++++|+|.+++++.++.++..+.. +.|++|++|+++||+++.+|||.+|.|+++..+. +. +..+++|+
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~---~~--~~~l~~G~ 407 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---GV--VCTLHEGD 407 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT---EE--EEEEETTC
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC---ee--EEEecCCC
Confidence 445677999999999999999999999985 5899999999999999999999999999986432 23 68999999
Q ss_pred eeehhhhhhccCCCCCCCCCCcceEEEEcc-eEEEEEecHHHHHHHHHHcHHHHHHHH
Q 044081 559 FCGEELLTWALDPRPTVILPSSTRSVKAIT-EVEAFTLTAEDLTFVASQFRRLHSKQL 615 (707)
Q Consensus 559 ~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt-~~~ll~L~~~df~~ll~~~p~l~~k~L 615 (707)
+|||.+++ ...+++++++|++ +|+++.|++++|..++.++|.+..++.
T Consensus 408 ~fGe~~ll---------~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~ 456 (469)
T 1o7f_A 408 DFGKLALV---------NDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK 456 (469)
T ss_dssp EECGGGGT---------CCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-----
T ss_pred EEEEehhh---------cCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 99999887 3346799999999 799999999999999999998765443
No 53
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.39 E-value=1.6e-12 Score=118.14 Aligned_cols=59 Identities=14% Similarity=0.345 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 044081 359 KYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSI 417 (707)
Q Consensus 359 ~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 417 (707)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|++.+.+++...
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999976543
No 54
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.30 E-value=1.3e-11 Score=150.86 Aligned_cols=135 Identities=20% Similarity=0.226 Sum_probs=110.8
Q ss_pred HHHhhCCcchHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecC
Q 044081 464 AILHELPFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNG 543 (707)
Q Consensus 464 ~ll~~Lp~~Lr~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~ 543 (707)
..|++-| .-|.+--.++....|+++++|+++++..+.+||..+....|++|++|+++||+++.+|+|++|.|.++..+.
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 4455544 344333334455778999999999999999999999999999999999999999999999999999986532
Q ss_pred ---CeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecHHHHHHHHHHcHHHH
Q 044081 544 ---GHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTAEDLTFVASQFRRLH 611 (707)
Q Consensus 544 ---g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~ 611 (707)
+.+.. +..+++|+.||| +++ ...+|++||+|.++|++++|++++|+.++.++|+..
T Consensus 102 ~~~~~~~~--v~~l~~G~sFGE-all---------~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 102 SSHQDAVT--ICTLGIGTAFGE-SIL---------DNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp SCTTSCEE--EEEEETTCEECG-GGG---------GTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCcee--EEEecCCcchhh-hhc---------cCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 22223 679999999999 555 233689999999999999999999999999998653
No 55
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.29 E-value=9.2e-12 Score=145.38 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=112.4
Q ss_pred HHHHhhCCcchHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCE-EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEe
Q 044081 463 EAILHELPFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLK-PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTT 541 (707)
Q Consensus 463 ~~ll~~Lp~~Lr~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~-~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~ 541 (707)
..+|...|. .|.+.......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|||++|.|+++..
T Consensus 12 r~iL~k~p~-~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKPPG-QRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSCGG-GCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCChh-hCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 456655444 454444455678899999999999999999999998 789999999999999999999999999999865
Q ss_pred cCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcc-eEEEEEecHHHHHHHHHHcHHH
Q 044081 542 NGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAIT-EVEAFTLTAEDLTFVASQFRRL 610 (707)
Q Consensus 542 ~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt-~~~ll~L~~~df~~ll~~~p~l 610 (707)
+ . .+ +..+++|++|||.+++ ...+++++++|++ +|+++.|++++|.+++.++|.+
T Consensus 91 g-~--~i--l~~l~~Gd~fGe~al~---------~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 G-K--GV--VCTLHEGDDFGKLALV---------NDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp T-T--EE--EEEEETTCEECHHHHH---------HTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred C-C--EE--EEEeCCCCEeehHHHh---------CCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 3 2 33 7899999999999887 2335789999999 5999999999999999998866
No 56
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.29 E-value=1.7e-11 Score=114.12 Aligned_cols=89 Identities=12% Similarity=0.275 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHhCC
Q 044081 359 KYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRM-EEWRIKRTDTEQWMHHRQ 437 (707)
Q Consensus 359 ~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~r~ 437 (707)
.|..|+||++.|+|||||||++|.+..+++++++.+++|++++++++|.+.+.+.+...+. +++..+.+.....+-.++
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT 119 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999886544333 333333333333333333
Q ss_pred CCHHHHHHHHH
Q 044081 438 LPPELRHSVRK 448 (707)
Q Consensus 438 lp~~L~~rVr~ 448 (707)
+ .++++++.+
T Consensus 120 ~-~~l~~~l~~ 129 (139)
T 3eff_K 120 T-RALHERFDR 129 (139)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 3 455555554
No 57
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.29 E-value=1.4e-11 Score=128.74 Aligned_cols=62 Identities=8% Similarity=0.038 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHhcccCCc-ccc-cCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q 044081 357 LNKYFYCFWWGLRNLSSLGQN-LAT-STYIGE----ILFTIVIATLGLVLFSLLIGNMQRYLQSTSIR 418 (707)
Q Consensus 357 ~~~Y~~slyW~l~tlstvG~g-d~~-~~~~~E----~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~ 418 (707)
+..+..|+||+++++||+||| |+. |.+... ..|++++++.|.+++++++|.+.+.++....+
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344668999999999999999 885 666543 89999999999999999999999988765443
No 58
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.22 E-value=1.6e-11 Score=120.36 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=78.2
Q ss_pred EEecCCcEEEccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcc
Q 044081 510 VLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAIT 588 (707)
Q Consensus 510 ~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt 588 (707)
+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.+ +..++||++||+ +++ ...++..+++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~~---------~~~~~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EAL---------EGKAYRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GGG---------TCSBCSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hhh---------CCCCceeEEEECC
Confidence 579999999999999999999999999998764 455555 789999999999 887 2335789999999
Q ss_pred eEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 589 EVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 589 ~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
+|+++.|++++|. |.+....++...+
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~~ 95 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLAR 95 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHHH
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHHH
Confidence 9999999999998 7776666555444
No 59
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.21 E-value=8e-11 Score=143.78 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=105.4
Q ss_pred HHHhhCCcchHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCEEEE-ecCCcEEEccCCCcCeEEEEEeeEEEEEEec
Q 044081 464 AILHELPFDLRREIKRHLCLNLVRRVPLFHQMDETILDVICERLKPVL-GTKGIFLVREGDPVQQMLFIVRGQLDSYTTN 542 (707)
Q Consensus 464 ~ll~~Lp~~Lr~~i~~~l~~~lL~~vplF~~ls~~~l~~L~~~l~~~~-~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~ 542 (707)
.++.+.|.+-..+. .....+.+.++|.|++++...++.++..+.... +++|++|+++||.++.+|||++|.|+++...
T Consensus 318 ~~l~k~~~~rt~ed-~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~ 396 (999)
T 4f7z_A 318 MILRKPPGQRTVDD-LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG 396 (999)
T ss_dssp HHHTSCGGGCCHHH-HHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred hhhcCCcccccHHH-HHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcC
Confidence 34444444332222 234567788999999999999999999999655 5789999999999999999999999998643
Q ss_pred CCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcce-EEEEEecHHHHHHHHHHc
Q 044081 543 GGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITE-VEAFTLTAEDLTFVASQF 607 (707)
Q Consensus 543 ~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~-~~ll~L~~~df~~ll~~~ 607 (707)
++. +..+++||.|||.+++ +..+|.+||+|.++ |+++.|+++||.+++.+-
T Consensus 397 ~~~-----v~~L~~Gd~FGElALL---------~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 397 KGV-----VCTLHEGDDFGKLALV---------NDAPRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp TEE-----EEEEETTCEECGGGGT---------CSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred Ccc-----eEEecCCCcccchhhc---------cCCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 332 6789999999999988 45678999999985 999999999999999763
No 60
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.11 E-value=1e-10 Score=115.11 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=77.9
Q ss_pred HhcCEEEEecCCcEEEccCCCc--CeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCc
Q 044081 504 CERLKPVLGTKGIFLVREGDPV--QQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSS 580 (707)
Q Consensus 504 ~~~l~~~~~~~ge~I~~eGd~~--~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~ 580 (707)
+..++.+.|++|++|+++||++ +++|+|.+|.|+++..+ +|++.+ +..++||++||+ +++ ...++
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l---------~~~~~ 69 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EAL---------FGQER 69 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHH---------HTCCB
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhc---------CCCCc
Confidence 4567889999999999999999 99999999999998764 455555 689999999999 666 12356
Q ss_pred ceEEEEcceEEEEEecHHHHHHHHHHcHHHHHHHHHHHHH
Q 044081 581 TRSVKAITEVEAFTLTAEDLTFVASQFRRLHSKQLRHKFR 620 (707)
Q Consensus 581 ~~tv~Alt~~~ll~L~~~df~~ll~~~p~l~~k~L~~~~r 620 (707)
..+++|+++|+++.| +++|. |.+....++...+
T Consensus 70 ~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~ 102 (202)
T 2zcw_A 70 IYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQ 102 (202)
T ss_dssp CSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred ceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHH
Confidence 899999999999999 98886 7776655554443
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.08 E-value=8e-10 Score=99.00 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRME 420 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~ 420 (707)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++++.+.++..+...+
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~ 110 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999866544433
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.01 E-value=1.7e-09 Score=93.89 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQS 414 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~ 414 (707)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++++|+++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6678999999999999999999999999999999999999999999999998864
No 63
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.01 E-value=1.2e-10 Score=102.54 Aligned_cols=59 Identities=12% Similarity=0.251 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 044081 359 KYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSI 417 (707)
Q Consensus 359 ~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 417 (707)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568999999999999999999999999999999999999999999999998876543
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.90 E-value=1.1e-10 Score=112.00 Aligned_cols=65 Identities=14% Similarity=0.354 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q 044081 358 NKYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIRMEEW 422 (707)
Q Consensus 358 ~~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~ 422 (707)
..|..|+||++.|+|||||||++|.+..+++++++.+++|++++++++|.+.+.+.+...+.++.
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~~ 130 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQ 130 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999999999999999999999999999999999998766554443
No 65
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.89 E-value=3.1e-09 Score=89.34 Aligned_cols=53 Identities=15% Similarity=0.394 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYL 412 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l 412 (707)
|..|+||++.|+||+||||+.|.+..+++++++.+++|+.++++.++++.+.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999875
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.76 E-value=1.8e-08 Score=105.35 Aligned_cols=56 Identities=7% Similarity=0.126 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044081 359 KYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQS 414 (707)
Q Consensus 359 ~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~ 414 (707)
.|..++||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.++.
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999888854
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.65 E-value=6.5e-08 Score=100.91 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044081 359 KYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQST 415 (707)
Q Consensus 359 ~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 415 (707)
.|..|+||+++|+|||||||++|.|..+++|+++.+++|+.+++++++++++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999988653
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.62 E-value=3.9e-08 Score=104.06 Aligned_cols=57 Identities=11% Similarity=0.177 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTS 416 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~ 416 (707)
|..++||++.|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+....
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999887654
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.61 E-value=1.8e-07 Score=98.59 Aligned_cols=59 Identities=10% Similarity=0.136 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 044081 359 KYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSI 417 (707)
Q Consensus 359 ~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 417 (707)
.|..|+||++.|+|||||||+.|.+..+++++++.+++|++++|+++|.+.+.+.....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999998876543
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.56 E-value=3.2e-07 Score=96.81 Aligned_cols=59 Identities=15% Similarity=0.350 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcccCCcccccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q 044081 360 YFYCFWWGLRNLSSLGQNLATST--YIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSIR 418 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~--~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~ 418 (707)
+..++||++.|+|||||||+.|+ +...++++++.+++|+++.|+++|.+.+-++.-..+
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 45689999999999999999997 688999999999999999999999998888765544
No 71
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.35 E-value=7.1e-06 Score=82.42 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccceeecCCccchhhhHHHHHHHHHHHHHHHHhhhceeEEcCCCcccCCCeE
Q 044081 89 LWSKIFLVACLVSVFLDPLFFYLPIVRREEMCIDNGVRTLETTLTIIRILADVFYVIQIFVCFRTAYVAPSSRVFGRGEF 168 (707)
Q Consensus 89 ~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~~f~~di~l~f~tay~~~~s~~~~~G~l 168 (707)
.++.++.++.+.+++..-+.- . ..+ ......+..++.++-++|.+|+++|+... |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~----~-------~~~-~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----------~-- 67 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT----Y-------ELD-PLFLETIHLLDYGITIFFVIEILIRFIGE-----------K-- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC----S-------SSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred hHHHHHHHHHHHHHHHHHHcc----C-------CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------C--
Confidence 556677777777776654431 1 111 34456788999999999999999998865 1
Q ss_pred eeChHHHHHHhhhh-chHHHHHHhCch
Q 044081 169 VVEPSKIASRCLQR-GFWLDFIAALPL 194 (707)
Q Consensus 169 V~d~~~Ia~~Yl~~-~F~iDlls~lPl 194 (707)
-.++|+++ |-++|+++++|.
T Consensus 68 ------~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 ------QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp -------------CHHHHHHHHHHHHT
T ss_pred ------chhHHhcCCcHHHHHHHHHHH
Confidence 24689998 999999887764
No 72
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.34 E-value=1.9e-06 Score=91.05 Aligned_cols=59 Identities=14% Similarity=0.326 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcccCCcccccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 044081 359 KYFYCFWWGLRNLSSLGQNLATST--YIGEILFTIVIATLGLVLFSLLIGNMQRYLQSTSI 417 (707)
Q Consensus 359 ~Y~~slyW~l~tlstvG~gd~~~~--~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 417 (707)
.+..++||++.|+||+||||+.|+ +...++++.+.+++|+++.|+++|.+.+-++.-..
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 154 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK 154 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 467899999999999999999864 88999999999999999999999999888876543
No 73
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.32 E-value=2.2e-06 Score=97.97 Aligned_cols=53 Identities=13% Similarity=0.374 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGN-MQRYL 412 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~-~~~~l 412 (707)
|+.|+||++.|+||+||||++|.+..+++|+++++++|++++++.++. +.+.+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999998 55444
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.28 E-value=1.2e-06 Score=90.06 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044081 359 KYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQS 414 (707)
Q Consensus 359 ~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~ 414 (707)
.|..|+||+++|+|||||||++|.|..+++|+++.+++|+.+++++++++...+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999876644
No 75
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.28 E-value=3.7e-07 Score=95.24 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcccCCcccccCchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIGEI------LFTIVIATLGLVLFSLLIGNMQRYLQSTSIRM 419 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~E~------~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~ 419 (707)
|+.|+||++.|+|||||||+.|.+..++ +++++++++|+.+++++++.+++.+.....+.
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999998886 59999999999999999999999887765443
No 76
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.25 E-value=4.3e-06 Score=85.88 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcccCCcccccCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044081 360 YFYCFWWGLRNLSSLGQNLATSTYIG-------EILFTIVIATLGLVLFSLLIGNMQRYLQST 415 (707)
Q Consensus 360 Y~~slyW~l~tlstvG~gd~~~~~~~-------E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 415 (707)
|+.|+||++.|+|||||||+.|.+.. .++++++.+++|+.+++++++.+.++++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999885 599999999999999999999999887654
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.99 E-value=5.1e-07 Score=96.24 Aligned_cols=55 Identities=15% Similarity=0.384 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044081 361 FYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQST 415 (707)
Q Consensus 361 ~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 415 (707)
..|+||++.|+||+||||++|.+..+++|+++++++|+++++++++.+.+.+.+.
T Consensus 47 ~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 47 TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp STTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999998887654
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.96 E-value=1.2e-05 Score=74.88 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccceeecCCccchhhhHHHHHHHHHHHHHHHHhhhceeEEcCCCcccCCCeE
Q 044081 89 LWSKIFLVACLVSVFLDPLFFYLPIVRREEMCIDNGVRTLETTLTIIRILADVFYVIQIFVCFRTAYVAPSSRVFGRGEF 168 (707)
Q Consensus 89 ~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~~f~~di~l~f~tay~~~~s~~~~~G~l 168 (707)
.|+.+++++.+.++++.-+..+.+ + + ......+..+++++-++|++|+++++..+
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~-i---------~-~~~~~~~~~id~~~~~iF~~Ey~lRl~~a-------------- 76 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQ-L---------S-GEYLVRLYLVDLILVIILWADYAYRAYKS-------------- 76 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-C---------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHh-h---------c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
Confidence 467777777776666555443211 1 1 23345678999999999999999999987
Q ss_pred eeChHHHHHHhhhhchHHHHHHhCchhh
Q 044081 169 VVEPSKIASRCLQRGFWLDFIAALPLPQ 196 (707)
Q Consensus 169 V~d~~~Ia~~Yl~~~F~iDlls~lPl~~ 196 (707)
.-.++|+++ -++|++|++|+..
T Consensus 77 -----~~k~~f~~~-~iiDllailP~~~ 98 (147)
T 2kyh_A 77 -----GDPAGYVKK-TLYEIPALVPAGL 98 (147)
T ss_dssp -----TCHHHHHHH-STTTHHHHCCHHH
T ss_pred -----CcHHHHHHH-HHHHHHHHHHHHH
Confidence 224689998 7899999999854
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.62 E-value=5.1e-05 Score=69.45 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccceeecCCccchhhhHHHHHHHHHHHHHHHHhhhceeEEcCCCcccCCCeE
Q 044081 89 LWSKIFLVACLVSVFLDPLFFYLPIVRREEMCIDNGVRTLETTLTIIRILADVFYVIQIFVCFRTAYVAPSSRVFGRGEF 168 (707)
Q Consensus 89 ~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~~f~~di~l~f~tay~~~~s~~~~~G~l 168 (707)
.++.+++++.+.+++..-+.-+ |. .+ ......+..+++++-++|++|+++++.++ +
T Consensus 7 ~f~~~i~~lIlls~~~~~~et~-~~---------~~-~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~---------- 62 (132)
T 1ors_C 7 LVELGVSYAALLSVIVVVVEYT-MQ---------LS-GEYLVRLYLVDLILVIILWADYAYRAYKS---G---------- 62 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-SC---------CC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHT---T----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-hh---------hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C----------
Confidence 4566666666666555444321 11 11 33456788999999999999999999975 1
Q ss_pred eeChHHHHHHhhhhchHHHHHHhCchhh
Q 044081 169 VVEPSKIASRCLQRGFWLDFIAALPLPQ 196 (707)
Q Consensus 169 V~d~~~Ia~~Yl~~~F~iDlls~lPl~~ 196 (707)
-.++|++ |-++|+++++|+..
T Consensus 63 ------~~~~y~~-~niiDllailp~~~ 83 (132)
T 1ors_C 63 ------DPAGYVK-KTLYEIPALVPAGL 83 (132)
T ss_dssp ------STTTTTT-TCGGGTGGGSCHHH
T ss_pred ------CHHHHHH-HHHHHHHHHHHHHH
Confidence 1358999 99999999999843
No 80
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=85.91 E-value=0.53 Score=30.06 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHhhh
Q 044081 626 WRTWAACFIQAAWRRHKNLK 645 (707)
Q Consensus 626 ~r~~~~~~iq~a~r~~~~r~ 645 (707)
-.+++|..||.|||+|.-+.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999998764
No 81
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=85.16 E-value=0.66 Score=30.60 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHHHHhhhh
Q 044081 625 HWRTWAACFIQAAWRRHKNLKE 646 (707)
Q Consensus 625 ~~r~~~~~~iq~a~r~~~~r~~ 646 (707)
+-.+|+|..||.|||+|.-|..
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3467999999999999997654
No 82
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=70.66 E-value=14 Score=31.61 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=45.5
Q ss_pred EEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEc
Q 044081 508 KPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAI 587 (707)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Al 587 (707)
....+++|..+-..-.+.+++++|++|.+++... ++ ...+++||.+=--. .....+++.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ip~--------------~~~H~~~~~ 97 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD--GA-----QRRLHQGDLLYLGA--------------GAAHDVNAI 97 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEET--TE-----EEEECTTEEEEECT--------------TCCEEEEES
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEEC--CE-----EEEECCCCEEEECC--------------CCcEEEEeC
Confidence 4456788888766555677999999999998642 33 34789998764321 124677788
Q ss_pred ceEEEEE
Q 044081 588 TEVEAFT 594 (707)
Q Consensus 588 t~~~ll~ 594 (707)
+++.++.
T Consensus 98 ~~~~~~~ 104 (114)
T 3fjs_A 98 TNTSLLV 104 (114)
T ss_dssp SSEEEEE
T ss_pred CCcEEEE
Confidence 8876554
No 83
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=67.82 E-value=16 Score=35.68 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=51.2
Q ss_pred CEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEE
Q 044081 507 LKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKA 586 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~A 586 (707)
+....+.+|+.+-..--+.+.+.+|++|.+++... +. ...+++||++=--+ ..+..++|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~~p~--------------~~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLEITA--------------NHNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEEECS--------------SCCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEEECC--------------CCCEEEEE
Confidence 34566899999987777899999999999998753 22 24788987653211 23678899
Q ss_pred cceEEEEEe
Q 044081 587 ITEVEAFTL 595 (707)
Q Consensus 587 lt~~~ll~L 595 (707)
.+++.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999877
No 84
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=66.17 E-value=17 Score=30.76 Aligned_cols=64 Identities=9% Similarity=0.040 Sum_probs=40.7
Q ss_pred EecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceE
Q 044081 511 LGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEV 590 (707)
Q Consensus 511 ~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~ 590 (707)
.+.+|..+-....+..++++|++|.+++.. +++ ...+++||.+=--+- ....+++.+++
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~i~~~--------------~~H~~~~~~~~ 102 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLMVPAH--------------KIHAIAGKGRF 102 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEECTT--------------CCBEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEEECCC--------------CcEEEEeCCCc
Confidence 356776654444567899999999999764 233 347899987642211 13455666777
Q ss_pred EEEEe
Q 044081 591 EAFTL 595 (707)
Q Consensus 591 ~ll~L 595 (707)
.++.+
T Consensus 103 ~~~~i 107 (114)
T 2ozj_A 103 KMLQI 107 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 85
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=62.15 E-value=36 Score=28.52 Aligned_cols=67 Identities=13% Similarity=0.026 Sum_probs=43.7
Q ss_pred EEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEc
Q 044081 508 KPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAI 587 (707)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Al 587 (707)
....+.+|..+-.--.+..++++|++|.+++.. +++ ...+.+||.+=--. .....+.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip~--------------~~~H~~~~~ 95 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFFVPP--------------HVDHGAVCP 95 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEEECT--------------TCCEEEEES
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEEECc--------------CCceeeEeC
Confidence 345578887754333346789999999998865 333 34789998853221 124566777
Q ss_pred ceEEEEEe
Q 044081 588 TEVEAFTL 595 (707)
Q Consensus 588 t~~~ll~L 595 (707)
++++++.+
T Consensus 96 ~~~~~l~v 103 (116)
T 2pfw_A 96 TGGILIDT 103 (116)
T ss_dssp SCEEEEEE
T ss_pred CCcEEEEE
Confidence 78777766
No 86
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=61.80 E-value=7.4 Score=45.47 Aligned_cols=55 Identities=16% Similarity=0.281 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044081 359 KYFYCFWWGLRNLSSLGQNLATSTYIGEILFTIVIATLGLVLFSLLIGNMQRYLQS 414 (707)
Q Consensus 359 ~Y~~slyW~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~ 414 (707)
....++|+++.+++..| ++..|.....+++.++++++++++.+.-.+++.++|..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35578999999998877 57899999999999999999999999999999999975
No 87
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=58.84 E-value=33 Score=28.73 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=43.2
Q ss_pred EEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEc
Q 044081 508 KPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAI 587 (707)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Al 587 (707)
....+.+|..+-.--.+..++++|++|.+.+.. + ++ ...+.+||++=--. .....+.+.
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~-~-~~-----~~~l~~Gd~~~ip~--------------~~~H~~~~~ 101 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-D-QE-----TYRVAEGQTIVMPA--------------GIPHALYAV 101 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-T-TE-----EEEEETTCEEEECT--------------TSCEEEEES
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE-C-CE-----EEEECCCCEEEECC--------------CCCEEEEEC
Confidence 344577887764443446799999999998864 2 33 24788998874211 124566777
Q ss_pred ceEEEEEe
Q 044081 588 TEVEAFTL 595 (707)
Q Consensus 588 t~~~ll~L 595 (707)
++++++.+
T Consensus 102 ~~~~~~~v 109 (115)
T 1yhf_A 102 EAFQMLLV 109 (115)
T ss_dssp SCEEEEEE
T ss_pred CCceEEEE
Confidence 77777654
No 88
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=58.51 E-value=23 Score=30.72 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=32.7
Q ss_pred EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 509 PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
...+.+|..+-.. ...+++++|++|.+++.. +++ ...+++||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3456788765443 377899999999999875 343 34789999875
No 89
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=48.49 E-value=46 Score=28.41 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=33.4
Q ss_pred EEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 508 KPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
....+.+|..+-.--.+..++++|++|.+++.. +++ ...+++||.+=
T Consensus 44 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 44 NWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 445678888775444456899999999999864 233 34789998763
No 90
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=46.65 E-value=54 Score=27.43 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=33.2
Q ss_pred CEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 507 LKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
+....+.+|+.-.. -+.+++++|++|.+.+... ++. ...+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC-----EEEECCCCEEE
Confidence 34566778876543 4568999999999998753 233 34789999874
No 91
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=42.18 E-value=34 Score=29.30 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=32.4
Q ss_pred CEEEEecCCcEEEccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 507 LKPVLGTKGIFLVREGDP-VQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
+....+.||..+-..-.+ ..++++|++|.+++... +++ ...+++||++=
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCe-----EEEeCCCCEEE
Confidence 344567888876544344 36899999999988542 333 34788998753
No 92
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=41.91 E-value=35 Score=31.91 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=26.9
Q ss_pred CcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 524 PVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 524 ~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
+.++++++++|.+.+-..++|+.. -..+++||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 467999999999999777655322 34899999874
No 93
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=41.60 E-value=34 Score=31.92 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=36.2
Q ss_pred CEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 507 LKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
+....+.||......-...+++++|++|++++...+.+... ...+++||++-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 44567888887655433467999999999998655433322 34789999874
No 94
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=40.83 E-value=67 Score=29.89 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=31.7
Q ss_pred EEecCCcEEEc---cCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 510 VLGTKGIFLVR---EGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 510 ~~~~~ge~I~~---eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
..+.||...-. -..+.+++++|++|.+++...+++... ...+++||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 35667765432 223457999999999998764422111 35899999874
No 95
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=40.56 E-value=41 Score=27.77 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=32.9
Q ss_pred EEEEecCCcEEEcc--CCC-cCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 508 KPVLGTKGIFLVRE--GDP-VQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 508 ~~~~~~~ge~I~~e--Gd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
....+.+|..+-.. -.+ ..++++|++|.+++... ++ ...+++||++=
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~--~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD--GH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET--TE-----EEEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 34567888876544 334 67999999999988642 32 34788998763
No 96
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=39.67 E-value=63 Score=31.22 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=46.8
Q ss_pred CEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEE
Q 044081 507 LKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKA 586 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~A 586 (707)
+....+++|+.+-..-.+.+++++|++|.+++.. + ++ ...+++||.+=--+- ....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-~-g~-----~~~l~~Gd~i~ip~~--------------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV-D-GK-----PFIVKKGESAVLPAN--------------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE-T-TE-----EEEEETTEEEEECTT--------------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE-C-CE-----EEEECCCCEEEECCC--------------CcEEEEe
Confidence 3456789999886555567789999999999864 2 33 347889987642211 2456777
Q ss_pred -cceEEEEEe
Q 044081 587 -ITEVEAFTL 595 (707)
Q Consensus 587 -lt~~~ll~L 595 (707)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888877653
No 97
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=39.55 E-value=41 Score=32.65 Aligned_cols=45 Identities=13% Similarity=0.030 Sum_probs=29.9
Q ss_pred EecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 511 LGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 511 ~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
.+.||...=.--.+.+++|+|++|.++....++ . ...+++||.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g-~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLRNA-P-----DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEETTS-C-----CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEECCC-C-----EEecCCCCEEE
Confidence 345554433333467899999999998865433 2 35788998764
No 98
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=39.48 E-value=30 Score=30.11 Aligned_cols=45 Identities=18% Similarity=0.405 Sum_probs=31.1
Q ss_pred EecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 511 LGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 511 ~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
..++|..-... +..++++.|++|.+.+...+ |. ...+++||.+--
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~dd-G~-----~~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQAD-AD-----PVKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEETT-CC-----CEEECTTEEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeCC-Ce-----EEEECCCCEEEE
Confidence 45666655544 33459999999999987543 33 347899998753
No 99
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=39.07 E-value=1e+02 Score=25.06 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=40.0
Q ss_pred EEEecCCcEEEccCCCc-CeE-EEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEE
Q 044081 509 PVLGTKGIFLVREGDPV-QQM-LFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKA 586 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~-~~l-yfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~A 586 (707)
...+.+|..+-..-.+. .++ ++|++|.+++...++ + ...+.+||.+=--. .....+.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~-~-----~~~l~~Gd~~~ip~--------------~~~H~~~~ 96 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGD-A-----VIPAPRGAVLVAPI--------------STPHGVRA 96 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGG-C-----EEEECTTEEEEEET--------------TSCEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCC-E-----EEEECCCCEEEeCC--------------CCcEEEEE
Confidence 34567887764333232 466 899999998864322 2 34788998763221 11355666
Q ss_pred cceEEEEEe
Q 044081 587 ITEVEAFTL 595 (707)
Q Consensus 587 lt~~~ll~L 595 (707)
.+++.++.+
T Consensus 97 ~~~~~~l~~ 105 (110)
T 2q30_A 97 VTDMKVLVT 105 (110)
T ss_dssp SSSEEEEEE
T ss_pred cCCcEEEEE
Confidence 777665543
No 100
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=38.95 E-value=48 Score=26.71 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=31.5
Q ss_pred EEEEecCCcEEEccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 508 KPVLGTKGIFLVREGDP-VQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 508 ~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
....+.+|..+-..-.+ .+++++|++|.+.+... ++ ...+++||.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 34557788776433323 35799999999988642 32 34788998763
No 101
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=37.70 E-value=25 Score=30.87 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=30.2
Q ss_pred EecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 511 LGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 511 ~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
...+|..-....+ .+++++|++|.+.+... +|. ...+++||.+--
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~-----~~~l~~GD~~~i 99 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT-----VHAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC-----EEEEETTCEEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe-----EEEECCCCEEEE
Confidence 3556665544322 38999999999998743 333 247899998753
No 102
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=37.54 E-value=53 Score=29.51 Aligned_cols=62 Identities=6% Similarity=0.052 Sum_probs=37.7
Q ss_pred cCCCcCeEEEEEeeEEEEEEecC--CeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEecH
Q 044081 521 EGDPVQQMLFIVRGQLDSYTTNG--GHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLTA 597 (707)
Q Consensus 521 eGd~~~~lyfI~~G~v~v~~~~~--g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~~ 597 (707)
.-+..|++|+|++|.+.+...++ +..+. ....+++|+++--- +. -..+-.|.++|.++.+..
T Consensus 46 ~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d-~~V~l~~Ge~yvVP--------kG------veH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 46 IHHSTDEQFILSAGKAILITAEKENDKFNI-ELTLMEKGKVYNVP--------AE------CWFYSITQKDTKMMYVQD 109 (140)
T ss_dssp EESSCCEEEEEEESCEEEEEEEEETTEEEE-EEEECCTTCCEEEC--------TT------CEEEEEECTTCEEEEEEE
T ss_pred cCCCCCeEEEEEecEEEEEEecCcCCCCcc-ceEEecCCCEEEeC--------CC------ccCcccCCCceEEEEEEe
Confidence 34557899999999999865532 11111 13588999887432 11 123455566777766654
No 103
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=33.66 E-value=27 Score=28.67 Aligned_cols=49 Identities=14% Similarity=0.010 Sum_probs=31.1
Q ss_pred EEEEecCCcEEEccCCCcC-eEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 508 KPVLGTKGIFLVREGDPVQ-QMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~-~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
....++||...-..--+.+ ++++|++|.+++...+ +.+ ...+.+||.+=
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~-g~~----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPE-GSV----TSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETT-EEE----EEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCC-CCE----EEEEcCCCEEE
Confidence 3455777776432222333 5999999999986433 211 34789998874
No 104
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=31.80 E-value=77 Score=25.50 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=32.8
Q ss_pred CeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEEEEec
Q 044081 526 QQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEAFTLT 596 (707)
Q Consensus 526 ~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~ll~L~ 596 (707)
.++++|++|.+.+... + + ...+.+||.+=-- + .....+.+.+++.++.++
T Consensus 51 ~e~~~v~~G~~~~~~~-~-~-----~~~l~~Gd~~~ip-------~-------~~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFR-D-Q-----NITLQAGEMYVIP-------K-------GVEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEECS-S-C-----EEEEETTEEEEEC-------T-------TCCBEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEEC-C-E-----EEEEcCCCEEEEC-------C-------CCeEeeEcCCCCEEEEEE
Confidence 7999999999987643 2 2 2467898875321 1 113455566788888765
No 105
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=31.78 E-value=98 Score=28.13 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=23.7
Q ss_pred CcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 524 PVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 524 ~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
..+++++|++|.+++.. +|+ ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 46789999999999874 443 34789998764
No 106
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=31.40 E-value=49 Score=28.06 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=24.1
Q ss_pred CCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 523 DPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 523 d~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
...+++++|++|.+++...++. . ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~-~----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDT-A----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCS-S----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEE-E----EEEECCCCEEE
Confidence 3567999999999998754321 0 03789998764
No 107
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=31.21 E-value=61 Score=29.73 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=31.6
Q ss_pred EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 509 PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
...+.+|..+-..--...++++|++|.+.+... ++ ...+++||++=
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD--DR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE
Confidence 445677766543334578999999999987642 22 34789998764
No 108
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=30.96 E-value=87 Score=29.56 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=34.8
Q ss_pred CEEEEecCCcEEEccCCC-cCeEEEEEeeEEEEEEecCC---eeeEEEeeecCCCCeee
Q 044081 507 LKPVLGTKGIFLVREGDP-VQQMLFIVRGQLDSYTTNGG---HFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g---~~~~~~~~~l~~Gd~fG 561 (707)
+....+.+|...-.--.+ .+++++|++|.+++...+++ .+.. ...+++||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEE
Confidence 345667888865433233 57999999999998664432 2211 35789999874
No 109
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=29.87 E-value=50 Score=30.79 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=31.9
Q ss_pred CEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCee
Q 044081 507 LKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFC 560 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 560 (707)
+....++||...-.--....+..+|++|++++...++ + ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~g-e-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDG-A-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGG-C-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCC-e-----EEEECCCCEE
Confidence 3445677776443222344578899999999874323 2 3478999998
No 110
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=29.21 E-value=62 Score=30.21 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=25.9
Q ss_pred CcCeEEEEEeeEEEEEEecCCe--eeEEEeeecCCCCeee
Q 044081 524 PVQQMLFIVRGQLDSYTTNGGH--FGFFNSSRIGPGDFCG 561 (707)
Q Consensus 524 ~~~~lyfI~~G~v~v~~~~~g~--~~~~~~~~l~~Gd~fG 561 (707)
+.++++++++|.+.+-..++|. +. +.-..+++||+|=
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~-~~dv~i~eGdmfl 91 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPK-FIDIIINEGDSYL 91 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCE-EEEEEECTTEEEE
T ss_pred CCceEEEEEeCEEEEEEEcCCCcccc-eeeEEECCCCEEE
Confidence 4569999999999997766440 01 1135889999874
No 111
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=28.55 E-value=56 Score=29.56 Aligned_cols=50 Identities=4% Similarity=-0.092 Sum_probs=31.7
Q ss_pred EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCe-----eeEEEeeecCCCCeee
Q 044081 509 PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGH-----FGFFNSSRIGPGDFCG 561 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~-----~~~~~~~~l~~Gd~fG 561 (707)
...+.+|..+-.--....++++|++|.+.+...++++ .. ...+.+||++=
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~---~~~l~~Gd~i~ 99 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ---EIPFFQNTTFS 99 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE---EEEECTTEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE---EEEeCCCCEEE
Confidence 4456777654222224568999999999987654221 01 34789998863
No 112
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=27.93 E-value=50 Score=27.34 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=38.7
Q ss_pred cCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcceEEE
Q 044081 513 TKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAITEVEA 592 (707)
Q Consensus 513 ~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt~~~l 592 (707)
.+|+.....-+..+++++|++|.+++...+ ++ ...+++||.+=--. . ....+.+.+++.+
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip~-------~-------~~H~~~~~~~~~~ 95 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAVVPK-------S-------VSHRPRSENGCSL 95 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEEECT-------T-------CCEEEEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEEECC-------C-------CcEeeEeCCCeEE
Confidence 455433222222389999999999986533 12 34789998873221 1 1344455567888
Q ss_pred EEecHHH
Q 044081 593 FTLTAED 599 (707)
Q Consensus 593 l~L~~~d 599 (707)
+.+....
T Consensus 96 l~i~~~~ 102 (107)
T 2i45_A 96 VLIELSD 102 (107)
T ss_dssp EEEECC-
T ss_pred EEEECCC
Confidence 7776543
No 113
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=27.52 E-value=1.2e+02 Score=26.71 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=30.2
Q ss_pred EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 509 PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
...+.||..-.. ...+++++|++|.+++... ++ ...+++||.+--
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~--g~-----~~~l~~GD~i~~ 105 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE--GE-----TMIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET--TE-----EEEEETTCEEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC--CE-----EEEECCCcEEEE
Confidence 345677743222 2467999999999998642 33 247899998753
No 114
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=27.26 E-value=89 Score=32.27 Aligned_cols=52 Identities=8% Similarity=-0.044 Sum_probs=34.5
Q ss_pred EEEEecCCcEEEccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 508 KPVLGTKGIFLVREGDP-VQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 508 ~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
....+.+|...-..-.+ .+++++|++|++++...+++++.. ...+++||++=
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~--~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE--IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE--EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE--EEEEcCCCEEE
Confidence 34567788865433334 789999999999987654332111 34789998764
No 115
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=26.58 E-value=55 Score=29.75 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=29.9
Q ss_pred EEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCee
Q 044081 510 VLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFC 560 (707)
Q Consensus 510 ~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 560 (707)
..+.||..+-..-....++++|++|.+++.. + ++ ...+.+||++
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v-~-g~-----~~~l~~Gd~i 92 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV-G-ET-----ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE-T-TE-----EEEEETTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE-C-CE-----EEEeCCCCEE
Confidence 3456666554333456789999999999864 2 33 3478899876
No 116
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=26.51 E-value=55 Score=30.12 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=30.9
Q ss_pred EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 509 PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
...+.||..+-..--...++++|++|.+++.. + ++ ...+++||++=
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v-~-g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV-G-RA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE-T-TE-----EEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE-C-CE-----EEEeCCCCEEE
Confidence 34456776654433456789999999999864 2 33 35788998763
No 117
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=26.04 E-value=1e+02 Score=27.41 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=31.1
Q ss_pred EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 509 PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
...+.+|..+-.---...++++|++|.+.+...+ +. ...+.+||++=
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~--~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG--KP----ARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEETT--SC----CEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEECC--EE----EEEECCCCEEE
Confidence 4556777766433334578999999999886432 21 13678988774
No 118
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=26.02 E-value=63 Score=27.11 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=28.6
Q ss_pred EEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEee-ecCCCCeee
Q 044081 510 VLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSS-RIGPGDFCG 561 (707)
Q Consensus 510 ~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~-~l~~Gd~fG 561 (707)
..+.+|..+-.--....++++|++|.+.+.. ++ + .. .+.+||++=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i-~~-~-----~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL-ED-Q-----EPHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE-TT-S-----CCEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE-CC-E-----EEEEeCCCCEEE
Confidence 3456666542222345689999999998864 32 2 23 678888763
No 119
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=26.01 E-value=1.8e+02 Score=28.31 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=41.6
Q ss_pred EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcc
Q 044081 509 PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAIT 588 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt 588 (707)
...++||...-..- .+++.+|++|++++.. +++ ...+++||.+---+- ....++..+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~~p~~--------------~~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVYLPAG--------------EKHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEEECTT--------------CCCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEEECCC--------------CCEEEEeCC
Confidence 45678887665442 7789999999999864 233 347899987653211 123444447
Q ss_pred eEEEEEec
Q 044081 589 EVEAFTLT 596 (707)
Q Consensus 589 ~~~ll~L~ 596 (707)
+++++.+.
T Consensus 111 ~~~~l~v~ 118 (246)
T 1sfn_A 111 DARVSVFE 118 (246)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 77777654
No 120
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=25.51 E-value=85 Score=30.73 Aligned_cols=50 Identities=14% Similarity=0.031 Sum_probs=36.2
Q ss_pred cCEEEEecCCcEEEc-cCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 506 RLKPVLGTKGIFLVR-EGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 506 ~l~~~~~~~ge~I~~-eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
.+....++||..+-. +-...++.++|++|++.+.. +++ ...+++||++--
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~~ 216 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIWM 216 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEEE
Confidence 345667899988754 44456799999999998753 343 357899998753
No 121
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=25.47 E-value=92 Score=22.97 Aligned_cols=22 Identities=23% Similarity=0.010 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhhhHHhhh
Q 044081 630 AACFIQAAWRRHKNLKETAKLK 651 (707)
Q Consensus 630 ~~~~iq~a~r~~~~r~~~~~~~ 651 (707)
++..||+.||.+.-|+.-..++
T Consensus 30 aai~IQ~~~Rg~~aR~~~~~~r 51 (58)
T 2ix7_C 30 AAITVQRYVRGYQARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999888876655444
No 122
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=25.44 E-value=92 Score=32.55 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=34.7
Q ss_pred EEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 508 KPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
....+.+|..+-..-.+..++++|++|.+++...+.+++.. ...+++||++=
T Consensus 82 ~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~--~~~l~~GD~~~ 133 (385)
T 1j58_A 82 VNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF--IDDVGEGDLWY 133 (385)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE--EEEEETTEEEE
T ss_pred EEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE--EEEeCCCCEEE
Confidence 34567888866433334789999999999987655322221 23788998763
No 123
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=24.68 E-value=26 Score=29.16 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=32.0
Q ss_pred CEEEEecCCcEEEccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCee
Q 044081 507 LKPVLGTKGIFLVREGDP-VQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFC 560 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 560 (707)
.+...++||+-+-..--+ ....++|.+|.+.+...++... ...+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~----~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS----LAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE----CCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE----EEEecCCcEE
Confidence 345668899887554444 4468888899998865443322 2367888765
No 124
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.07 E-value=78 Score=27.50 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=30.9
Q ss_pred EEEecCCcEEEccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 509 PVLGTKGIFLVREGDP-VQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
...++||..+-.---. ..++++|++|.+++... ++ ...+.+||.+=
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN--GK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEET--TE-----EEEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEEC--CE-----EEEeCCCcEEE
Confidence 4567888766432223 46899999999988642 33 34788998763
No 125
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=23.93 E-value=1.1e+02 Score=29.73 Aligned_cols=47 Identities=11% Similarity=0.026 Sum_probs=33.9
Q ss_pred CEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCee
Q 044081 507 LKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFC 560 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 560 (707)
+....+.+|..+-.---+..++++|++|.+++.. ++. ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4445588888876555567889999999999875 333 3478899844
No 126
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=23.80 E-value=89 Score=26.55 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=45.5
Q ss_pred EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEc-
Q 044081 509 PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAI- 587 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Al- 587 (707)
...+.+|...-.---...++++|++|.+++.. +++ ...+++||++=--.- ....+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~i~~~--------------~~H~~~~~~ 96 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLIIIPLD--------------SEHHVINNN 96 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEECTT--------------CCEEEEECS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEEECCC--------------CcEEeEeCC
Confidence 44566776443333356789999999998865 233 347889887642211 12334443
Q ss_pred -ceEE--EEEecHHHHHHHHHHcH
Q 044081 588 -TEVE--AFTLTAEDLTFVASQFR 608 (707)
Q Consensus 588 -t~~~--ll~L~~~df~~ll~~~p 608 (707)
++++ ++.++.+-+..++.+.+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHhcc
Confidence 3333 45567776666555443
No 127
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=23.78 E-value=75 Score=27.25 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=29.8
Q ss_pred EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 509 PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
...+.+|...-.---...++++|++|.+++... ++ ...+.+||++=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SC-----EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CE-----EEEECCCCEEE
Confidence 344566665533333467999999999987642 22 24678888763
No 128
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=23.73 E-value=58 Score=22.99 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q 044081 627 RTWAACFIQAAWRRHKNLKE 646 (707)
Q Consensus 627 r~~~~~~iq~a~r~~~~r~~ 646 (707)
++-++..||+.||.+..|+.
T Consensus 27 ~~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 27 KVNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHh
Confidence 34588889999998887763
No 129
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=23.63 E-value=1.3e+02 Score=31.10 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=35.1
Q ss_pred CEEEEecCCcEEEccCCCc-CeEEEEEeeEEEEEEec-CCeeeEEEeeecCCCCeee
Q 044081 507 LKPVLGTKGIFLVREGDPV-QQMLFIVRGQLDSYTTN-GGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~-~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (707)
+....+.+|..+-..-.+. +++++|++|.+++...+ +|+ .. ...+++||++=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~-~~--~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGK-AS--VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTC-EE--EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCc-EE--EEEECCCCEEE
Confidence 3456678888765433344 89999999999986533 332 11 34789999874
No 130
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=23.55 E-value=1.1e+02 Score=28.24 Aligned_cols=45 Identities=7% Similarity=0.095 Sum_probs=30.4
Q ss_pred EEecCCcEEEc--cCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 510 VLGTKGIFLVR--EGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 510 ~~~~~ge~I~~--eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
..+++|..... -.....++++|++|.+++.. ++. ...+.+||.+=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 45677776542 12334799999999999864 233 34789999863
No 131
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=23.51 E-value=1.1e+02 Score=31.97 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=35.5
Q ss_pred CEEEEecCCcEEEccCCCc-CeEEEEEeeEEEEEEe-cCCeeeEEEeeecCCCCeeeh
Q 044081 507 LKPVLGTKGIFLVREGDPV-QQMLFIVRGQLDSYTT-NGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~-~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe 562 (707)
+....+.+|...-..-.+. +++++|++|.+++... .+|... ...+++||++--
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~---~~~l~~GD~~~i 313 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR---TFNYQAGDVGYV 313 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE---EEEEESSCEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE---EEEEcCCCEEEE
Confidence 3455678888765433444 8999999999998654 333222 347889998743
No 132
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=23.50 E-value=1e+02 Score=29.13 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=44.6
Q ss_pred cCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEE
Q 044081 506 RLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVK 585 (707)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~ 585 (707)
.+....+.+|..+-.-.-+..++.+|++|..+ ++. ..+.+||++=.- + ....+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~-------~~~~~Gd~~~~p-------~-------g~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET-------DRFGAGDIEIAD-------Q-------ELEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS-------SEEETTCEEEEC-------S-------SCCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc-------EEECCCeEEEeC-------c-------CCccCCE
Confidence 44577789999998888889999999999965 222 257788875322 1 1233445
Q ss_pred E--cceEEEEEe
Q 044081 586 A--ITEVEAFTL 595 (707)
Q Consensus 586 A--lt~~~ll~L 595 (707)
+ .++|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 5 667877764
No 133
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=23.37 E-value=50 Score=30.72 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhHH
Q 044081 627 RTWAACFIQAAWRRHKNLKETA 648 (707)
Q Consensus 627 r~~~~~~iq~a~r~~~~r~~~~ 648 (707)
..+||..||.|||+|..|+...
T Consensus 129 e~~aA~~IQra~R~~~~r~~~~ 150 (168)
T 4dck_A 129 EEVSAMVIQRAFRRHLLQRSLK 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 4579999999999998765443
No 134
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=23.26 E-value=57 Score=34.68 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=35.2
Q ss_pred EEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 508 KPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
....++||+.+-.---...++|||++|+-..+..+ |+ ...+++||++=-
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~-G~-----~~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVD-GH-----KVELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEET-TE-----EEEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEEC-CE-----EEEEcCCCEEEE
Confidence 56778999888655545668999999987554444 33 347899998753
No 135
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=23.00 E-value=80 Score=33.78 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=38.3
Q ss_pred cCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 506 RLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
.+....+.||..+..--...+++++|++|++.+...+.+... ...+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 355778899987766655578999999999998654333222 35789999874
No 136
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=22.96 E-value=1.2e+02 Score=30.43 Aligned_cols=69 Identities=9% Similarity=0.072 Sum_probs=44.0
Q ss_pred EEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeehhhhhhccCCCCCCCCCCcceEEEEcc
Q 044081 509 PVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGEELLTWALDPRPTVILPSSTRSVKAIT 588 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ld~~~~~~~~~~~~tv~Alt 588 (707)
...+.||..--......+++.+|++|++++...+ ++ ...+++||.+=.-+= ...+++..+
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~-----~~~L~~Gds~y~p~~--------------~~H~~~N~~ 133 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SS-----SKKLTVDSYAYLPPN--------------FHHSLDCVE 133 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC-----CEEECTTEEEEECTT--------------CCCEEEESS
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-Cc-----EEEEcCCCEEEECCC--------------CCEEEEeCC
Confidence 4557888764223345779999999999986431 22 247899987643211 134455567
Q ss_pred eEEEEEecH
Q 044081 589 EVEAFTLTA 597 (707)
Q Consensus 589 ~~~ll~L~~ 597 (707)
+++++.+.+
T Consensus 134 ~Ar~l~V~k 142 (266)
T 4e2q_A 134 SATLVVFER 142 (266)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 888888754
No 137
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=22.37 E-value=89 Score=33.78 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=38.3
Q ss_pred cCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 506 RLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
.+....+.||..+...-...+++++|++|++.+...+++... ...+++||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEEE
Confidence 445677899988766544578999999999988654333322 45889999874
No 138
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=22.30 E-value=79 Score=27.47 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=27.4
Q ss_pred EecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 511 LGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 511 ~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
.+.+|..+-.--....++++|++|.+++....+++ ...+++||++=
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~~ 90 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAIF 90 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTE-----EEEECTTCEEE
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEEEeECCE-----EEEECCCCEEE
Confidence 34455443222223456778999999886323333 35789998763
No 139
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=22.19 E-value=84 Score=33.84 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=39.4
Q ss_pred hcCEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 505 ERLKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 505 ~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
-.+....+.||..+..--...+++++|++|+..+...+.++.. ...+++||++-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 3456778899998876644578999999999988654433322 35789999874
No 140
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=22.02 E-value=1.1e+02 Score=30.63 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=36.3
Q ss_pred cCEEEEecCCcEEEc-cCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 506 RLKPVLGTKGIFLVR-EGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 506 ~l~~~~~~~ge~I~~-eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
.+....++||..|-. +-...++.++|++|+..+.. +++ ...+++||++-
T Consensus 192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~-----~~~v~~GD~~~ 241 (278)
T 1sq4_A 192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQD-----WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 456678999999964 44455689999999998753 343 45789999864
No 141
>3euj_B Chromosome partition protein MUKF; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_E*
Probab=21.78 E-value=10 Score=33.75 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=0.0
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcC--------------CCHHHHHhhCCcchHHH
Q 044081 434 HHRQLPPELRHSVRKFDQYKWVATRG--------------VDEEAILHELPFDLRRE 476 (707)
Q Consensus 434 ~~r~lp~~L~~rVr~y~~y~w~~~~~--------------~~e~~ll~~Lp~~Lr~~ 476 (707)
+.|-.+..||+.|+.||+.-|.-+-. ..++++..+||+.|.-+
T Consensus 3 KNRvFsQRLRqSi~~Yfd~pW~Lt~A~aeRL~DlRDEel~Lr~eEvtGelP~elEye 59 (152)
T 3euj_B 3 KNRVFGQRLRQSIQNYFSSPWLLYTAKAEALLDLRDDEAMLNEMEAVGELPMALEYE 59 (152)
T ss_dssp ---------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHhccCchhhhhcchHHHhhhhHHHHhhhhhhhhcCCchhhhHH
Confidence 34567889999999999999984321 23457778888876543
No 142
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=21.47 E-value=79 Score=28.78 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=30.6
Q ss_pred EEEEecCCcEEE--ccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 508 KPVLGTKGIFLV--REGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 508 ~~~~~~~ge~I~--~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
....+.+|.... ..-+..+++++|++|.+++... ++ ...+++||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEE
Confidence 345567777542 1222236999999999998743 22 34788998764
No 143
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=21.30 E-value=97 Score=27.62 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=34.2
Q ss_pred CEEEEecCCcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 507 LKPVLGTKGIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
+....++||..+-.-.-+..+.++|++|..+. ..++... -..+++||++=.
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~--~~g~~~~---~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV--RGGKAAG---GDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE--TTCGGGT---SEEEESSEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE--cCCCEec---ceEeCCCEEEEE
Confidence 45677899998877666678889999999973 2222110 025678877643
No 144
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=20.25 E-value=1.8e+02 Score=31.89 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=39.9
Q ss_pred HHHHHhcCEEEEecCCcEEEccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeee
Q 044081 500 LDVICERLKPVLGTKGIFLVREGDP-VQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCG 561 (707)
Q Consensus 500 l~~L~~~l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (707)
+..+--.+....+.||..+-.-=-+ ++++++|++|.+++...+......+ ...+++||++=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~-~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF-DGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE-EEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE-eEEEcCCCEEE
Confidence 3444445667778999866433223 6899999999999865544322221 25699999874
No 145
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=20.23 E-value=1.4e+02 Score=26.28 Aligned_cols=51 Identities=14% Similarity=-0.060 Sum_probs=30.0
Q ss_pred EEEecCCcEEEccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCee
Q 044081 509 PVLGTKGIFLVREGDP-VQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFC 560 (707)
Q Consensus 509 ~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 560 (707)
...+.+|..+-..--+ .+++++|++|.+.+...+......+ ...+.+||++
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~-~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHF-QEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCE-EEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCcccccee-eEEECCCCEE
Confidence 3456777655322222 4589999999999875433210000 1478899865
No 146
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=20.19 E-value=1.9e+02 Score=28.05 Aligned_cols=47 Identities=13% Similarity=-0.043 Sum_probs=33.3
Q ss_pred EEEecC-CcEEEccCCCcCeEEEEEeeEEEEEEecCCeeeEEEeeecCCCCeeeh
Q 044081 509 PVLGTK-GIFLVREGDPVQQMLFIVRGQLDSYTTNGGHFGFFNSSRIGPGDFCGE 562 (707)
Q Consensus 509 ~~~~~~-ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (707)
...++| |..+-..--+..++++|++|.+++... + + ...+++||.+--
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~-~-~-----~~~l~~Gd~i~i 196 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVE-G-C-----TVEMKFGTAYFC 196 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEET-T-E-----EEEECTTCEEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEEC-C-E-----EEEECCCCEEEE
Confidence 445788 877654444567899999999988643 2 2 347899998754
Done!