BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044082
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 3 CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCK--WSGVQCSNRTGHVIMLNLKYK 60
C +++QALL K+ L + LSSW DCC W GV C T + NL
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNL--- 55
Query: 61 VDPVCPNRPLRGNINSSLLELQHLNYLDL-SVNDFLGNPIPEFIGFFTKLRFLDLSLANF 119
D N P I SSL L +LN+L + +N+ +G PIP I T+L +L ++ N
Sbjct: 56 -DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNV 113
Query: 120 SGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA 170
SG IP L + L +L+ YN+L + +S L L + D +S A
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
L G I S L +LN++ LS N G IP++IG L L LS +FSG IP +LG+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 130 LTNLQSLNLGYN 141
+L L+L N
Sbjct: 537 CRSLIWLDLNTN 548
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 47 NRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFF 106
+ G ++ L++ Y + L G I + + +L L+L ND G+ IP+ +G
Sbjct: 629 DNNGSMMFLDMSYNM--------LSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDL 679
Query: 107 TKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSL 143
L LDLS GRIP + LT L ++L N+L
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRI-PYQLGNLTN-LQ 134
+LL+++ L LDLS N+F G L LDLS NFSG I P N N LQ
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 135 SLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188
L L N LS+ ++L L L F LS + SL+ LRDL L
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT--IPSSLGSLSKLRDLKL 449
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 67 NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126
N G I +L L L LS N +L IP +G +KLR L L L G IP +
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS-EASDWLQVITSLASLR 184
L + L++L L +N L LS+ L + L L+ E W+ + +LA L+
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
L G I SSL L L L L +N G IP+ + + L L L + +G IP L N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL 162
TNL ++L N L W+ L L L L
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
L G I L+ ++ L L L ND G IP + T L ++ LS +G IP +G
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
L NL L L NS + L L LDL+
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP 124
+ G+I + +L+ LN LDLS N G IP+ + T L +DLS N SG IP
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGR-IPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 109 LRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS 168
+ FLD+S SG IP ++G++ L LNLG+N + S + L L LDL L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 169 EASDWLQVITSLASLRDLYLASSTL 193
Q +++L L ++ L+++ L
Sbjct: 694 --GRIPQAMSALTMLTEIDLSNNNL 716
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 79 LELQHLNYLDLSVNDFLGNPIPEFI-GFFTKLRFLDLSLANFSGRIPYQLG 128
L L+ L YL L+ N F G IP+F+ G L LDLS +F G +P G
Sbjct: 266 LPLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 67 NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126
N L G I + L++L L LS N F GN IP +G L +LDL+ F+G IP
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGN-IPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 127 L 127
+
Sbjct: 558 M 558
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYN 141
+L +LD+S N+F IP F+G + L+ LD+S SG + T L+ LN+ N
Sbjct: 201 NLEFLDVSSNNF-STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
L G I S L +LN++ LS N G IP++IG L L LS +FSG IP +LG+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 130 LTNLQSLNLGYN 141
+L L+L N
Sbjct: 534 CRSLIWLDLNTN 545
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 47 NRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFF 106
+ G ++ L++ Y + L G I + + +L L+L ND G+ IP+ +G
Sbjct: 626 DNNGSMMFLDMSYNM--------LSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDL 676
Query: 107 TKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSL 143
L LDLS GRIP + LT L ++L N+L
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRI-PYQLGNLTN-LQ 134
+LL+++ L LDLS N+F G L LDLS NFSG I P N N LQ
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 135 SLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188
L L N LS+ ++L L L F LS + SL+ LRDL L
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT--IPSSLGSLSKLRDLKL 446
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 67 NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126
N G I +L L L LS N +L IP +G +KLR L L L G IP +
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS-EASDWLQVITSLASLR 184
L + L++L L +N L LS+ L + L L+ E W+ + +LA L+
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
L G I SSL L L L L +N G IP+ + + L L L + +G IP L N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL 162
TNL ++L N L W+ L L L L
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
L G I L+ ++ L L L ND G IP + T L ++ LS +G IP +G
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
L NL L L NS + L L LDL+
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP 124
+ G+I + +L+ LN LDLS N G IP+ + T L +DLS N SG IP
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGR-IPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 109 LRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS 168
+ FLD+S SG IP ++G++ L LNLG+N + S + L L LDL L
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 169 EASDWLQVITSLASLRDLYLASSTL 193
Q +++L L ++ L+++ L
Sbjct: 691 --GRIPQAMSALTMLTEIDLSNNNL 713
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 79 LELQHLNYLDLSVNDFLGNPIPEFI-GFFTKLRFLDLSLANFSGRIPYQLG 128
L L+ L YL L+ N F G IP+F+ G L LDLS +F G +P G
Sbjct: 263 LPLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 67 NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126
N L G I + L++L L LS N F GN IP +G L +LDL+ F+G IP
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGN-IPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 127 L 127
+
Sbjct: 555 M 555
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYN 141
+L +LD+S N+F IP F+G + L+ LD+S SG + T L+ LN+ N
Sbjct: 198 NLEFLDVSSNNF-STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
S+L EL +L YL L+ N P F T L+ L L LTNL
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVF-DKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
LNL +N L G L LT+LDL + L + V L L+DL L + L S
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG--VFDKLTQLKDLRLYQNQLKS 195
Query: 196 I 196
+
Sbjct: 196 V 196
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 81 LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
L L L ++ N F N +P+ L FLDLS P +L++LQ LN+ +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 141 NSLYVSKFGWLSHLNKLTQLD--LDFVDLSEASDWLQVITSLASL 183
N+ + LN L LD L+ + S+ + +SLA L
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 81 LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
L L L ++ N F N +P+ L FLDLS P +L++LQ LN+ +
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 141 NSLYVSKFGWLSHLNKLTQLD--LDFVDLSEASDWLQVITSLASL 183
N+ + LN L LD L+ + S+ + +SLA L
Sbjct: 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 81 LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
L L L ++ N F N +P+ L FLDLS P +L++LQ LN+ +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 141 NSLYVSKFGWLSHLNKLTQLD--LDFVDLSEASDWLQVITSLASL 183
N+ + LN L LD L+ + S+ + +SLA L
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%)
Query: 81 LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
L L L ++ N F N +P+ L FLDLS P +L++LQ LN+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 141 NSLYVSKFGWLSHLNKLTQL 160
N L G L L ++
Sbjct: 504 NQLKSVPDGIFDRLTSLQKI 523
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 81 LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
L HL+ L+L N F P+ F F +L+ +DL L N + N +L+SLNL
Sbjct: 545 LSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 603
Query: 141 NSLY-VSKFGWLSHLNKLTQLDLDF 164
N + V K + LT+LD+ F
Sbjct: 604 NLITSVEKKVFGPAFRNLTELDMRF 628
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 81 LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
L HL+ L+L N F P+ F F +L+ +DL L N + N +L+SLNL
Sbjct: 540 LSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 598
Query: 141 NSLY-VSKFGWLSHLNKLTQLDLDF 164
N + V K + LT+LD+ F
Sbjct: 599 NLITSVEKKVFGPAFRNLTELDMRF 623
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 81 LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
L HL+ L+L N F P+ F F +L+ +DL L N + N +L+SLNL
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 141 NSLY-VSKFGWLSHLNKLTQLDLDF 164
N + V K + LT+LD+ F
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRF 618
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 75 NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANF 119
N S + L +LDLS NDF P+ + G TKL FL LS A F
Sbjct: 114 NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 75 NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNL 133
N L L+HL YL+LS N+ LG F +L LD++ + + P+ NL L
Sbjct: 368 NLQLKNLRHLQYLNLSYNEPLGLEDQAF-KECPQLELLDVAFTHLHVKAPHSPFQNLHLL 426
Query: 134 QSLNLGYNSLYVSKFGWLSHLNKLTQLDLD---FVDLS-EASDWLQVITSLASLRDLYLA 189
+ LNL + L S L+ L L L+L F D S ++ LQ++ SL L L+
Sbjct: 427 RVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMV---GSLEILILS 483
Query: 190 SSTLPSINR 198
S L SI++
Sbjct: 484 SCNLLSIDQ 492
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 104 GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
G T + L L + + P +LT L LNL N L G L KLT L L
Sbjct: 37 GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALH 96
Query: 164 FVDLSEASDWLQVITSLASLRDLYL 188
L S + V +L SL +YL
Sbjct: 97 INQLK--SIPMGVFDNLKSLTHIYL 119
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 32.0 bits (71), Expect = 0.31, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPE 101
LR N++S++LEL+ L DL DF+ P PE
Sbjct: 458 LRSNLSSTVLELKKLGIDDLVHFDFMDPPAPE 489
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 32.0 bits (71), Expect = 0.31, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPE 101
LR N++S++LEL+ L DL DF+ P PE
Sbjct: 458 LRSNLSSTVLELKKLGIDDLVHFDFMDPPAPE 489
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 25 LSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHL 84
+S G + G K V+ N +G ++L + P+ +P R N +S ++QHL
Sbjct: 120 ISHLGEEHGDKITADLVAVE--NESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHL 177
Query: 85 NYLDLSVNDFL 95
++ V DF+
Sbjct: 178 VFMLERVIDFM 188
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%)
Query: 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLN 137
L L LN L ++ N F N + T L FLDLS L LQ LN
Sbjct: 439 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 498
Query: 138 LGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQ 175
+ +N+L + L L+ LD F + + LQ
Sbjct: 499 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 536
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 71 RGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT-KLRFLDLSLANFSGRI--PYQL 127
+G+I+ + L L+YLDLS N + + T LR LDLS F+G I
Sbjct: 334 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS---FNGAIIMSANF 390
Query: 128 GNLTNLQSLNLGYNSL-YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDL 186
L LQ L+ +++L V++F L KL LD+ + + D+ + L SL L
Sbjct: 391 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN--TKIDFDGIFLGLTSLNTL 448
Query: 187 YLASSTL 193
+A ++
Sbjct: 449 KMAGNSF 455
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%)
Query: 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLN 137
L L LN L ++ N F N + T L FLDLS L LQ LN
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503
Query: 138 LGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQ 175
+ +N+L + L L+ LD F + + LQ
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 71 RGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT-KLRFLDLSLANFSGRI--PYQL 127
+G+I+ + L L+YLDLS N + + T LR LDLS F+G I
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS---FNGAIIMSANF 395
Query: 128 GNLTNLQSLNLGYNSL-YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDL 186
L LQ L+ +++L V++F L KL LD+ + + D+ + L SL L
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN--TKIDFDGIFLGLTSLNTL 453
Query: 187 YLASSTL 193
+A ++
Sbjct: 454 KMAGNSF 460
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 84 LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSL 143
L L L N P+ F G + L LD+S + Y +L NL+SL +G N L
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 144 YVSKFGWLSHLNKLTQLDLDFVDLSE-ASDWLQVITSLASLR 184
S LN L QL L+ +L+ ++ L + L LR
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 106 FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL 162
F L L+L+ S P NL NL++L L N L + G + L+ LT+LD+
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 109 LRFLDLSLANF--SGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD 166
LR LDLS + S QL NL++LQSLNL YN K +L LDL F
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 167 LSEASDWLQVITSLASLRDLYLASSTL 193
L + D +L L+ L L+ S L
Sbjct: 412 L-KVKDAQSPFQNLHLLKVLNLSHSLL 437
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 38 CKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLL--ELQHLNYLDLSVNDFL 95
C+ + V C+ R I ++ + N G I+S L L HL L+L N
Sbjct: 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 96 GNPIPEFIG--FFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSH 153
G F G +L+ + + S ++ L L++LNL N + G H
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKM---FLGLHQLKTLNLYDNQISCVMPGSFEH 124
Query: 154 LNKLTQLDL 162
LN LT L+L
Sbjct: 125 LNSLTSLNL 133
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
S+L EL +L YL L+ N P F T L+ L L LTNL
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVF-DKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
L L +N L G L LT+LDLD L + V L L+ L L + L S
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG--VFDKLTQLKQLSLNDNQLKS 195
Query: 196 I 196
+
Sbjct: 196 V 196
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS 115
LL L++L LD+S N F +P+P+ + K+RFL+LS
Sbjct: 409 LLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLS 444
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 26/118 (22%)
Query: 81 LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LG------NLTNL 133
L L +LDLS N L + + G + L++L+L + N PYQ LG NLTNL
Sbjct: 99 LGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNL-MGN-----PYQTLGVTSLFPNLTNL 151
Query: 134 QSLNLG----YNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187
Q+L +G ++ + F L+ LN+L L + SL S+RD++
Sbjct: 152 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ--------SLKSIRDIH 201
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS 115
LL L++L LD+S N F +P+P+ + K+RFL+LS
Sbjct: 383 LLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLS 418
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 26/118 (22%)
Query: 81 LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LG------NLTNL 133
L L +LDLS N L + + G + L++L+L + N PYQ LG NLTNL
Sbjct: 73 LGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNL-MGN-----PYQTLGVTSLFPNLTNL 125
Query: 134 QSLNLG----YNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187
Q+L +G ++ + F L+ LN+L L + SL S+RD++
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ--------SLKSIRDIH 175
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSG-RIPYQLGNLTNLQSLNLGY 140
Q L YLDLS N + + L+ LDLS F I + GN++ L+ L L
Sbjct: 69 QELEYLDLSHNKLVKISCHPTVN----LKHLDLSFNAFDALPICKEFGNMSQLKFLGLST 124
Query: 141 NSLYVSKFGWLSHLN 155
L S ++HLN
Sbjct: 125 THLEKSSVLPIAHLN 139
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 104 GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
G T + L L + P +L NL+ L LG N L G L +LT LDL
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINR 198
L+ V L L++L++ + L + R
Sbjct: 97 TNQLTVLPS--AVFDRLVHLKELFMCCNKLTELPR 129
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 97 NPIPEFIGFFTKLRFLDLSLANFSGRIPY----QLGNLTNLQSLNLGYNSLYVSKFGWLS 152
N IP G ++ LDLS + RI Y L NLQ+L L N + + S
Sbjct: 18 NSIPS--GLTEAVKSLDLS----NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 71
Query: 153 HLNKLTQLDLDFVDLSE-ASDWLQVITSLASL 183
L L LDL + LS +S W + ++SL L
Sbjct: 72 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 103
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 97 NPIPEFIGFFTKLRFLDLSLANFSGRIPY----QLGNLTNLQSLNLGYNSLYVSKFGWLS 152
N IP G ++ LDLS + RI Y L NLQ+L L N + + S
Sbjct: 44 NSIPS--GLTEAVKSLDLS----NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97
Query: 153 HLNKLTQLDLDFVDLSE-ASDWLQVITSLASL 183
L L LDL + LS +S W + ++SL L
Sbjct: 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129
>pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
pdb|3HPF|B Chain B, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
Length = 391
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFI 103
+R I+++L +L YLD+SV+DFLG + E I
Sbjct: 96 IRNGIDNALHDLC-AKYLDISVSDFLGGRVKEKI 128
>pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|B Chain B, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|C Chain C, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|D Chain D, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|E Chain E, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|F Chain F, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|G Chain G, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|H Chain H, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|3ES7|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES7|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|C Chain C, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|D Chain D, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|E Chain E, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|F Chain F, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|G Chain G, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|H Chain H, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3FYY|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3FYY|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3GD6|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Phosphate
Length = 391
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 70 LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFI 103
+R I+++L +L YLD+SV+DFLG + E I
Sbjct: 96 IRNGIDNALHDLC-AKYLDISVSDFLGGRVKEKI 128
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
L+L N LY L +LTQL+LD +L++ LQV +L L L L+ + L S
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPVLGTLDLSHNQLQS 91
Query: 196 I 196
+
Sbjct: 92 L 92
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 124 PYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
P +L NLQ L N L G L +LTQLDL+
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,250,432
Number of Sequences: 62578
Number of extensions: 237028
Number of successful extensions: 595
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 145
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)