Query 044082
Match_columns 243
No_of_seqs 179 out of 2404
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 11:16:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.7E-28 3.7E-33 230.0 18.7 221 4-243 27-270 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.4E-21 3.1E-26 183.4 12.2 168 68-242 150-317 (968)
3 KOG4194 Membrane glycoprotein 99.8 8.4E-20 1.8E-24 154.5 2.2 65 47-120 170-234 (873)
4 KOG4194 Membrane glycoprotein 99.8 3.1E-19 6.7E-24 151.1 3.0 186 50-243 125-351 (873)
5 KOG0617 Ras suppressor protein 99.7 7.2E-19 1.6E-23 128.0 -0.8 163 50-232 33-196 (264)
6 KOG0617 Ras suppressor protein 99.7 1.9E-19 4.1E-24 131.0 -4.7 155 78-243 29-183 (264)
7 PLN03150 hypothetical protein; 99.7 3.1E-16 6.7E-21 140.1 12.8 149 4-167 370-527 (623)
8 KOG0444 Cytoskeletal regulator 99.7 7.9E-18 1.7E-22 144.0 -1.6 182 51-243 104-301 (1255)
9 KOG0444 Cytoskeletal regulator 99.6 4.6E-17 9.9E-22 139.4 0.8 175 50-243 7-183 (1255)
10 cd00116 LRR_RI Leucine-rich re 99.6 1.1E-15 2.4E-20 126.4 2.2 184 49-243 80-288 (319)
11 KOG0472 Leucine-rich repeat pr 99.5 2.3E-15 5E-20 122.8 2.4 85 151-243 431-538 (565)
12 cd00116 LRR_RI Leucine-rich re 99.5 1.3E-14 2.8E-19 120.0 3.1 183 50-243 51-260 (319)
13 KOG0472 Leucine-rich repeat pr 99.4 1.2E-15 2.5E-20 124.5 -6.8 157 73-243 151-307 (565)
14 KOG4237 Extracellular matrix p 99.4 1.1E-14 2.4E-19 118.5 -1.6 82 50-141 67-150 (498)
15 KOG0618 Serine/threonine phosp 99.4 3.4E-14 7.4E-19 126.2 1.1 181 49-243 240-486 (1081)
16 PLN03210 Resistant to P. syrin 99.4 2.2E-12 4.8E-17 123.0 13.2 34 208-243 846-879 (1153)
17 KOG0618 Serine/threonine phosp 99.4 2.3E-14 5E-19 127.3 -0.9 148 82-240 359-507 (1081)
18 PLN03210 Resistant to P. syrin 99.4 2.5E-12 5.3E-17 122.7 12.6 89 78-171 653-741 (1153)
19 PRK15387 E3 ubiquitin-protein 99.4 1.2E-12 2.7E-17 118.0 9.3 34 208-243 422-455 (788)
20 PRK15370 E3 ubiquitin-protein 99.4 2.8E-12 6.1E-17 116.0 10.6 162 51-243 200-377 (754)
21 KOG0532 Leucine-rich repeat (L 99.4 2.4E-14 5.2E-19 121.4 -2.8 162 66-243 83-244 (722)
22 PRK15370 E3 ubiquitin-protein 99.4 4E-12 8.6E-17 115.1 9.9 159 50-243 220-398 (754)
23 KOG4237 Extracellular matrix p 99.3 1.6E-13 3.5E-18 111.8 -2.0 179 50-243 91-356 (498)
24 PF14580 LRR_9: Leucine-rich r 99.3 1.1E-12 2.3E-17 98.3 1.8 86 106-194 41-126 (175)
25 PF14580 LRR_9: Leucine-rich r 99.3 1E-11 2.2E-16 93.0 6.5 126 105-240 17-147 (175)
26 PRK15387 E3 ubiquitin-protein 99.3 4E-11 8.7E-16 108.4 10.9 126 83-231 343-468 (788)
27 COG4886 Leucine-rich repeat (L 99.2 2E-11 4.4E-16 104.1 5.0 170 51-243 117-287 (394)
28 PLN03150 hypothetical protein; 99.1 2.2E-10 4.8E-15 102.8 8.4 107 84-194 420-528 (623)
29 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.3E-16 102.4 -0.0 178 49-240 145-333 (505)
30 KOG1259 Nischarin, modulator o 99.1 6.5E-12 1.4E-16 99.6 -1.5 136 76-222 278-413 (490)
31 KOG1909 Ran GTPase-activating 99.1 2.5E-11 5.4E-16 97.7 0.4 183 51-243 93-308 (382)
32 KOG1909 Ran GTPase-activating 99.0 1E-10 2.2E-15 94.3 1.7 165 77-243 87-280 (382)
33 KOG1259 Nischarin, modulator o 99.0 9.5E-11 2.1E-15 93.0 0.6 135 48-198 282-416 (490)
34 KOG0532 Leucine-rich repeat (L 99.0 8.9E-12 1.9E-16 106.1 -5.6 148 81-243 74-221 (722)
35 COG4886 Leucine-rich repeat (L 99.0 5.2E-10 1.1E-14 95.4 4.0 154 77-243 111-265 (394)
36 PF13855 LRR_8: Leucine rich r 98.9 1.9E-09 4.2E-14 66.7 4.2 59 108-166 2-60 (61)
37 PF13855 LRR_8: Leucine rich r 98.9 2.4E-09 5.3E-14 66.2 3.4 61 82-143 1-61 (61)
38 KOG3207 Beta-tubulin folding c 98.8 1.5E-09 3.3E-14 90.0 0.8 167 47-222 169-340 (505)
39 PF08263 LRRNT_2: Leucine rich 98.7 3.9E-08 8.4E-13 56.1 4.1 40 5-46 2-43 (43)
40 KOG4658 Apoptotic ATPase [Sign 98.6 1.6E-08 3.5E-13 93.4 2.0 89 76-166 565-653 (889)
41 KOG2120 SCF ubiquitin ligase, 98.6 5.4E-10 1.2E-14 88.6 -6.9 179 50-242 185-372 (419)
42 KOG1859 Leucine-rich repeat pr 98.5 1.7E-09 3.7E-14 94.9 -5.5 126 84-221 166-292 (1096)
43 KOG1859 Leucine-rich repeat pr 98.5 1.1E-09 2.4E-14 96.1 -6.8 111 77-194 182-292 (1096)
44 KOG0531 Protein phosphatase 1, 98.5 2.3E-08 4.9E-13 85.9 -0.0 109 78-194 91-199 (414)
45 KOG1644 U2-associated snRNP A' 98.5 2.7E-07 5.8E-12 69.5 5.3 108 108-218 43-150 (233)
46 KOG2120 SCF ubiquitin ligase, 98.4 4.2E-09 9E-14 83.7 -6.5 160 82-243 185-348 (419)
47 KOG0531 Protein phosphatase 1, 98.4 5.3E-08 1.2E-12 83.6 -0.5 131 79-221 69-199 (414)
48 KOG2982 Uncharacterized conser 98.3 1.6E-07 3.5E-12 74.8 0.7 84 50-142 71-157 (418)
49 KOG4579 Leucine-rich repeat (L 98.3 2.8E-08 6E-13 70.4 -3.7 91 77-171 48-139 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.3 7E-07 1.5E-11 70.4 3.6 11 50-60 30-40 (388)
51 KOG4658 Apoptotic ATPase [Sign 98.3 1E-06 2.2E-11 81.7 4.8 105 83-191 546-652 (889)
52 PF12799 LRR_4: Leucine Rich r 98.1 5.3E-06 1.1E-10 47.4 3.4 36 83-120 2-37 (44)
53 KOG3665 ZYG-1-like serine/thre 98.1 6.9E-07 1.5E-11 80.8 -0.5 143 82-227 122-269 (699)
54 COG5238 RNA1 Ran GTPase-activa 98.0 1.8E-06 3.8E-11 68.2 1.2 86 49-144 57-170 (388)
55 KOG3665 ZYG-1-like serine/thre 98.0 3.1E-06 6.7E-11 76.7 2.4 109 107-221 122-233 (699)
56 PRK15386 type III secretion pr 97.9 5.2E-05 1.1E-09 64.1 8.5 32 83-117 73-104 (426)
57 KOG2739 Leucine-rich acidic nu 97.9 3.3E-06 7.2E-11 66.1 1.3 40 105-144 63-104 (260)
58 KOG1644 U2-associated snRNP A' 97.9 1.5E-05 3.2E-10 60.3 4.2 124 109-242 21-149 (233)
59 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 45.9 2.6 39 132-171 2-40 (44)
60 KOG4579 Leucine-rich repeat (L 97.9 1E-06 2.2E-11 62.6 -2.3 87 48-145 51-137 (177)
61 KOG2982 Uncharacterized conser 97.5 3E-05 6.6E-10 62.1 0.8 150 36-194 82-262 (418)
62 KOG2739 Leucine-rich acidic nu 97.5 9.2E-05 2E-09 58.1 3.3 107 105-214 41-149 (260)
63 KOG2123 Uncharacterized conser 97.4 8.9E-06 1.9E-10 64.5 -2.9 85 106-195 18-102 (388)
64 PRK15386 type III secretion pr 97.4 0.00043 9.2E-09 58.7 6.7 85 73-171 43-128 (426)
65 KOG2123 Uncharacterized conser 97.0 1.9E-05 4.2E-10 62.7 -5.2 104 79-187 16-123 (388)
66 PF13306 LRR_5: Leucine rich r 96.8 0.008 1.7E-07 42.5 7.3 37 77-115 30-66 (129)
67 PF13306 LRR_5: Leucine rich r 96.7 0.0071 1.5E-07 42.7 6.3 106 77-190 7-112 (129)
68 PF00560 LRR_1: Leucine Rich R 96.1 0.002 4.4E-08 30.6 0.5 21 209-230 1-21 (22)
69 PF00560 LRR_1: Leucine Rich R 95.3 0.0099 2.1E-07 28.2 1.1 11 110-120 3-13 (22)
70 PF13516 LRR_6: Leucine Rich r 94.8 0.019 4.1E-07 27.8 1.3 22 208-229 2-23 (24)
71 KOG4308 LRR-containing protein 94.8 0.00027 5.9E-09 61.6 -9.1 181 52-243 89-300 (478)
72 KOG3864 Uncharacterized conser 94.6 0.013 2.9E-07 44.6 0.7 35 132-166 102-136 (221)
73 PF13504 LRR_7: Leucine rich r 93.6 0.05 1.1E-06 24.0 1.3 13 209-221 2-14 (17)
74 KOG1947 Leucine rich repeat pr 93.4 0.031 6.7E-07 48.7 0.9 111 81-192 187-306 (482)
75 KOG1947 Leucine rich repeat pr 93.0 0.026 5.7E-07 49.2 -0.2 114 105-221 186-308 (482)
76 KOG4341 F-box protein containi 92.0 0.068 1.5E-06 45.3 1.0 88 105-192 292-383 (483)
77 smart00370 LRR Leucine-rich re 91.8 0.16 3.6E-06 24.8 2.0 20 208-228 2-21 (26)
78 smart00369 LRR_TYP Leucine-ric 91.8 0.16 3.6E-06 24.8 2.0 20 208-228 2-21 (26)
79 KOG3864 Uncharacterized conser 90.4 0.038 8.2E-07 42.2 -1.8 85 107-193 101-188 (221)
80 KOG0473 Leucine-rich repeat pr 90.2 0.0086 1.9E-07 46.8 -5.4 86 48-145 40-125 (326)
81 KOG4341 F-box protein containi 89.1 0.17 3.6E-06 43.0 0.9 160 51-219 269-437 (483)
82 KOG0473 Leucine-rich repeat pr 87.7 0.016 3.4E-07 45.4 -5.5 92 125-224 36-127 (326)
83 KOG3763 mRNA export factor TAP 86.8 0.46 1E-05 41.8 2.2 36 156-191 219-254 (585)
84 smart00368 LRR_RI Leucine rich 86.4 0.59 1.3E-05 23.4 1.7 22 208-229 2-23 (28)
85 smart00365 LRR_SD22 Leucine-ri 79.8 1.7 3.7E-05 21.4 1.7 14 208-221 2-15 (26)
86 KOG4308 LRR-containing protein 78.2 0.059 1.3E-06 47.2 -6.5 165 50-223 115-305 (478)
87 smart00364 LRR_BAC Leucine-ric 76.3 2 4.3E-05 21.2 1.3 17 156-172 3-19 (26)
88 smart00367 LRR_CC Leucine-rich 59.7 6.5 0.00014 19.0 1.2 16 208-223 2-18 (26)
89 KOG3763 mRNA export factor TAP 57.4 6.1 0.00013 35.1 1.5 36 130-165 217-254 (585)
90 KOG4242 Predicted myosin-I-bin 26.7 65 0.0014 28.5 2.8 86 107-194 165-254 (553)
91 TIGR00864 PCC polycystin catio 20.9 63 0.0014 34.9 2.0 31 113-143 1-31 (2740)
92 TIGR00864 PCC polycystin catio 20.6 69 0.0015 34.7 2.1 32 65-96 2-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.7e-28 Score=229.95 Aligned_cols=221 Identities=31% Similarity=0.441 Sum_probs=138.4
Q ss_pred CHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCC
Q 044082 4 IEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQH 83 (243)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (243)
.+.|+.||++|++++.+|.+++.+|. ...++|.|.|+.|.. .++|+.|||+++ .+.+.++..+..+++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~--------~i~~~~~~~~~~l~~ 94 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGK--------NISGKISSAIFRLPY 94 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCC--------CccccCChHHhCCCC
Confidence 45799999999999988888888997 578899999999974 568999999994 677777777777777
Q ss_pred CcEEEccCCCCCCCCcchhhc-CCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEc
Q 044082 84 LNYLDLSVNDFLGNPIPEFIG-FFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL 162 (243)
Q Consensus 84 L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 162 (243)
|++|++++|.+.+. +|..+. .+++|++|++++|.+.+.+|. +.+++|++|++++|.+++..|..++.+++|++|++
T Consensus 95 L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 171 (968)
T PLN00113 95 IQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171 (968)
T ss_pred CCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence 77777777777654 555443 666666666666666544443 23444555555555544444444444455555555
Q ss_pred CCccccCC-cc---------------------hHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCcc
Q 044082 163 DFVDLSEA-SD---------------------WLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGL 220 (243)
Q Consensus 163 ~~n~l~~~-~~---------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i 220 (243)
++|.+.+. |. ++..+..+++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l-~~L~~L~L~~n~l 248 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP--YEIGGL-TSLNHLDLVYNNL 248 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC--hhHhcC-CCCCEEECcCcee
Confidence 55444333 21 11244444555555555555544444 344444 5555555555555
Q ss_pred ccccchhHHhhhccCceeeCCCC
Q 044082 221 SNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 221 ~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
++.+|..++++++ |++|++++|
T Consensus 249 ~~~~p~~l~~l~~-L~~L~L~~n 270 (968)
T PLN00113 249 TGPIPSSLGNLKN-LQYLFLYQN 270 (968)
T ss_pred ccccChhHhCCCC-CCEEECcCC
Confidence 5555555555555 555555543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.4e-21 Score=183.40 Aligned_cols=168 Identities=30% Similarity=0.395 Sum_probs=93.4
Q ss_pred CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC
Q 044082 68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK 147 (243)
Q Consensus 68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 147 (243)
|.+.+.+|..++++++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+++..
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 455666666666666666666666666554 6666666666666666666666556666666666666666666665555
Q ss_pred ccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchh
Q 044082 148 FGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHW 227 (243)
Q Consensus 148 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 227 (243)
|..++.+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+ ..+..+ ++|+.|++++|.+++.+|..
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l-~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQNKLSGPIP--PSIFSL-QKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCCeeeccCc--hhHhhc-cCcCEEECcCCeeccCCChh
Confidence 55556666666666666655443 11245555555555555555544433 333333 44444444444444444444
Q ss_pred HHhhhccCceeeCCC
Q 044082 228 LFKISSNLLALDLNS 242 (243)
Q Consensus 228 l~~l~~~L~~L~l~~ 242 (243)
+..+++ |++|++++
T Consensus 304 ~~~l~~-L~~L~l~~ 317 (968)
T PLN00113 304 VIQLQN-LEILHLFS 317 (968)
T ss_pred HcCCCC-CcEEECCC
Confidence 444444 44444443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=8.4e-20 Score=154.49 Aligned_cols=65 Identities=22% Similarity=0.077 Sum_probs=32.1
Q ss_pred CCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCcccc
Q 044082 47 NRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFS 120 (243)
Q Consensus 47 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 120 (243)
+...+++.|+|++|.| +..-...|..+.+|..|.|++|+++.. .+..|..+++|+.|++..|.+.
T Consensus 170 p~~~ni~~L~La~N~I--------t~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNRI--------TTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred CCCCCceEEeeccccc--------cccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhcccccee
Confidence 3445677788887544 333333444444444555555554443 3333444444444444444443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=3.1e-19 Score=151.09 Aligned_cols=186 Identities=23% Similarity=0.223 Sum_probs=133.5
Q ss_pred CceEEEecCCCCC----------------CCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEe
Q 044082 50 GHVIMLNLKYKVD----------------PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLD 113 (243)
Q Consensus 50 ~~l~~L~l~~~~~----------------~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 113 (243)
++++.|+|.+|.| +++..|.++..--+.+..-.++++|+|++|.|+.. -.+.|..+.+|..|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-ETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc-ccccccccchheeee
Confidence 6789999999887 67777777754445667778899999999999987 678899999999999
Q ss_pred cCCccccccCCc-CCCCCCCCcEEEccCCccccCCccccCC------------------------CCCCCEEEcCCcccc
Q 044082 114 LSLANFSGRIPY-QLGNLTNLQSLNLGYNSLYVSKFGWLSH------------------------LNKLTQLDLDFVDLS 168 (243)
Q Consensus 114 l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------l~~L~~L~l~~n~l~ 168 (243)
++.|.++ .+|. .|.++++|+.|++..|++.....-.|.+ +.++++|+++.|.++
T Consensus 204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 9999999 5554 6777999999999999865322222333 345555555555555
Q ss_pred CCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 169 EASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 169 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
...+ .++-.+..|++|++++|.+..+.. ..+... ++|+.|+|++|+|+...+.+|..+.. |++|++++|
T Consensus 283 ~vn~--g~lfgLt~L~~L~lS~NaI~rih~--d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~N 351 (873)
T KOG4194|consen 283 AVNE--GWLFGLTSLEQLDLSYNAIQRIHI--DSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHN 351 (873)
T ss_pred hhhc--ccccccchhhhhccchhhhheeec--chhhhc-ccceeEeccccccccCChhHHHHHHH-hhhhccccc
Confidence 4421 244556667777777777766655 344444 77888888888887666667777777 777777765
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=7.2e-19 Score=128.00 Aligned_cols=163 Identities=25% Similarity=0.305 Sum_probs=129.8
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|-|++ |.++ .+|+.++.+.+|+.|++.+|.++. +|..++.+++|+.|+++-|.+. ..|..|+.
T Consensus 33 s~ITrLtLSH--------NKl~-~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~-~lprgfgs 100 (264)
T KOG0617|consen 33 SNITRLTLSH--------NKLT-VVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLN-ILPRGFGS 100 (264)
T ss_pred hhhhhhhccc--------Ccee-ecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhh-cCccccCC
Confidence 4677788888 4555 567788888888888888888877 7888888888888888888888 88888888
Q ss_pred CCCCcEEEccCCcccc-CCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082 130 LTNLQSLNLGYNSLYV-SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST 208 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 208 (243)
+|.|+.||+.+|.+.. .+|..|..|..|+.|.+++|.+.-.|. .++++.+|+.|.+.+|.+-..+ ..++.+ .
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~---dvg~lt~lqil~lrdndll~lp---keig~l-t 173 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP---DVGKLTNLQILSLRDNDLLSLP---KEIGDL-T 173 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh---hhhhhcceeEEeeccCchhhCc---HHHHHH-H
Confidence 8888888888887754 467777778888888888888877754 7788888888888888876554 467777 8
Q ss_pred CCcEEECCCCccccccchhHHhhh
Q 044082 209 SLALLDLSSCGLSNSAYHWLFKIS 232 (243)
Q Consensus 209 ~L~~L~L~~n~i~~~~~~~l~~l~ 232 (243)
.|++|++.+|+++ .+|+.++.+.
T Consensus 174 ~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 174 RLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred HHHHHhcccceee-ecChhhhhhh
Confidence 8888888888888 5676676654
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=1.9e-19 Score=131.02 Aligned_cols=155 Identities=26% Similarity=0.345 Sum_probs=138.7
Q ss_pred hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
+.++.+++.|.++.|+++. +|+.++.+.+|+.|++.+|.+. .+|..++.+++|+.|+++.|++. ..|..|+.++-|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 5567888999999999988 7889999999999999999999 89999999999999999999987 578889999999
Q ss_pred CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237 (243)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~ 237 (243)
+.|++++|.+.+.. ++..+-.+..|+.|.+++|.|.-.++ .++++ ++|+.|.+.+|.+- ..|+.++.+.+ |++
T Consensus 105 evldltynnl~e~~-lpgnff~m~tlralyl~dndfe~lp~---dvg~l-t~lqil~lrdndll-~lpkeig~lt~-lre 177 (264)
T KOG0617|consen 105 EVLDLTYNNLNENS-LPGNFFYMTTLRALYLGDNDFEILPP---DVGKL-TNLQILSLRDNDLL-SLPKEIGDLTR-LRE 177 (264)
T ss_pred hhhhcccccccccc-CCcchhHHHHHHHHHhcCCCcccCCh---hhhhh-cceeEEeeccCchh-hCcHHHHHHHH-HHH
Confidence 99999999998763 24578888999999999999976554 88898 99999999999987 79999999999 999
Q ss_pred eeCCCC
Q 044082 238 LDLNSN 243 (243)
Q Consensus 238 L~l~~N 243 (243)
|.+.+|
T Consensus 178 lhiqgn 183 (264)
T KOG0617|consen 178 LHIQGN 183 (264)
T ss_pred Hhcccc
Confidence 998876
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.69 E-value=3.1e-16 Score=140.14 Aligned_cols=149 Identities=34% Similarity=0.436 Sum_probs=127.2
Q ss_pred CHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCc----ccceEEecCC--C--CceEEEecCCCCCCCCCCCCcccccc
Q 044082 4 IEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCC----KWSGVQCSNR--T--GHVIMLNLKYKVDPVCPNRPLRGNIN 75 (243)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~~c~~~--~--~~l~~L~l~~~~~~~~~~~~~~~~~~ 75 (243)
.+.|..||++++++++++.. .+|. ++.|+ .|.|+.|... . ..|+.|+|++ |.+.|.+|
T Consensus 370 ~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------n~L~g~ip 435 (623)
T PLN03150 370 LLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------QGLRGFIP 435 (623)
T ss_pred CchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC--------CCccccCC
Confidence 55789999999999966543 3786 33332 7999999521 1 2589999999 59999999
Q ss_pred hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCC-
Q 044082 76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHL- 154 (243)
Q Consensus 76 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l- 154 (243)
..++++++|+.|++++|.+.+. +|..+..+++|+.|++++|.+.+.+|..++.+++|++|++++|.+++.+|..+...
T Consensus 436 ~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~ 514 (623)
T PLN03150 436 NDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514 (623)
T ss_pred HHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence 9999999999999999999987 99999999999999999999999999999999999999999999999999887753
Q ss_pred CCCCEEEcCCccc
Q 044082 155 NKLTQLDLDFVDL 167 (243)
Q Consensus 155 ~~L~~L~l~~n~l 167 (243)
.++..+++.+|..
T Consensus 515 ~~~~~l~~~~N~~ 527 (623)
T PLN03150 515 LHRASFNFTDNAG 527 (623)
T ss_pred ccCceEEecCCcc
Confidence 4677888888753
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=7.9e-18 Score=144.02 Aligned_cols=182 Identities=24% Similarity=0.240 Sum_probs=102.7
Q ss_pred ceEEEecCCCCC---------------CCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecC
Q 044082 51 HVIMLNLKYKVD---------------PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS 115 (243)
Q Consensus 51 ~l~~L~l~~~~~---------------~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 115 (243)
.++.||||.|.+ +++++|+|....-+-+.++..|-+||+++|++.. +|+.+..+..|++|.++
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~--LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM--LPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh--cCHHHHHHhhhhhhhcC
Confidence 466777777543 3444455553323344566666666666666655 55556666666666666
Q ss_pred CccccccCCcCCCCCCCCcEEEccCCccc-cCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCC
Q 044082 116 LANFSGRIPYQLGNLTNLQSLNLGYNSLY-VSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP 194 (243)
Q Consensus 116 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~ 194 (243)
+|.+...--..+..+.+|+.|.+++.+-+ .-+|.++-.+.+|+.++++.|.+...|+ -+-++++|+.|+|++|+++
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe---cly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE---CLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH---HHhhhhhhheeccCcCcee
Confidence 66554211122334444444555443321 2345555556666666666666655554 5556666677777777666
Q ss_pred CCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 195 SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 195 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
.... ....+ .+|++|+++.|+++ .+|..+.++++ |+.|.+.+|
T Consensus 259 eL~~---~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~k-L~kLy~n~N 301 (1255)
T KOG0444|consen 259 ELNM---TEGEW-ENLETLNLSRNQLT-VLPDAVCKLTK-LTKLYANNN 301 (1255)
T ss_pred eeec---cHHHH-hhhhhhccccchhc-cchHHHhhhHH-HHHHHhccC
Confidence 5432 34444 66666777777766 56666666666 666655544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=4.6e-17 Score=139.43 Aligned_cols=175 Identities=22% Similarity=0.239 Sum_probs=149.4
Q ss_pred CceEEEecCCCCCCCCCCCCcc-cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLR-GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 128 (243)
+-|+.+|+++ |.++ +.+|..+..|++++.|.+....+.. +|+.++.+.+|++|.+.+|.+. .+-..++
T Consensus 7 pFVrGvDfsg--------NDFsg~~FP~~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~-~vhGELs 75 (1255)
T KOG0444|consen 7 PFVRGVDFSG--------NDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLI-SVHGELS 75 (1255)
T ss_pred ceeecccccC--------CcCCCCcCchhHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhH-hhhhhhc
Confidence 5688999999 6888 5679999999999999999999887 8999999999999999999988 6666788
Q ss_pred CCCCCcEEEccCCcccc-CCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCC
Q 044082 129 NLTNLQSLNLGYNSLYV-SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSS 207 (243)
Q Consensus 129 ~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 207 (243)
.+|.|+.+.+..|++.. -+|..+-.+..|.+|+++.|.+...|. .+..-+++-.|+|++|++..++. .-+.++
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~---~LE~AKn~iVLNLS~N~IetIPn--~lfinL- 149 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT---NLEYAKNSIVLNLSYNNIETIPN--SLFINL- 149 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch---hhhhhcCcEEEEcccCccccCCc--hHHHhh-
Confidence 88999999998887653 356778888999999999999988876 77777888899999999988876 556666
Q ss_pred CCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 208 TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 208 ~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
..|-.|||++|++. .+|+.+..+.. |++|++++|
T Consensus 150 tDLLfLDLS~NrLe-~LPPQ~RRL~~-LqtL~Ls~N 183 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLE-MLPPQIRRLSM-LQTLKLSNN 183 (1255)
T ss_pred HhHhhhccccchhh-hcCHHHHHHhh-hhhhhcCCC
Confidence 88888999999997 67778888888 999999887
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.56 E-value=1.1e-15 Score=126.36 Aligned_cols=184 Identities=25% Similarity=0.225 Sum_probs=119.9
Q ss_pred CCceEEEecCCCCCCCCCCCCcccccchhhccCCC---CcEEEccCCCCCCCC---cchhhcCC-CCCcEEecCCccccc
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQH---LNYLDLSVNDFLGNP---IPEFIGFF-TKLRFLDLSLANFSG 121 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~---L~~L~l~~n~l~~~~---~~~~~~~l-~~L~~L~l~~~~~~~ 121 (243)
..+++.|+++++ .+.+..+..+..+.. |++|++++|.+.... +...+..+ ++|+.|++++|.+++
T Consensus 80 ~~~L~~L~l~~~--------~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 80 GCGLQELDLSDN--------ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred cCceeEEEccCC--------CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence 458889999884 666555555555555 888888888876321 23345566 788888888888773
Q ss_pred c----CCcCCCCCCCCcEEEccCCccccC----CccccCCCCCCCEEEcCCccccCC--cchHHHhhccccccccccccc
Q 044082 122 R----IPYQLGNLTNLQSLNLGYNSLYVS----KFGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASS 191 (243)
Q Consensus 122 ~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n 191 (243)
. ++..+..+++|++|++++|.+++. ++..+...++|++|++++|.+.+. ..+...+..+++|++|++++|
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 2 233455667788888888887642 223344556888888888887655 233445667778888888888
Q ss_pred cCCCCCCCCcccccC----CCCCcEEECCCCccccc----cchhHHhhhccCceeeCCCC
Q 044082 192 TLPSINRPSLSSMNS----STSLALLDLSSCGLSNS----AYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 192 ~~~~~~~~~~~~~~~----~~~L~~L~L~~n~i~~~----~~~~l~~l~~~L~~L~l~~N 243 (243)
.+++... ..+... .+.|+.|++++|.+++. +...+..++. |+++++++|
T Consensus 232 ~l~~~~~--~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~-L~~l~l~~N 288 (319)
T cd00116 232 NLTDAGA--AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES-LLELDLRGN 288 (319)
T ss_pred cCchHHH--HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC-ccEEECCCC
Confidence 7764222 121111 16788888888888632 3334445555 888888776
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.54 E-value=2.3e-15 Score=122.83 Aligned_cols=85 Identities=32% Similarity=0.356 Sum_probs=59.0
Q ss_pred cCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCC-----------------------CCCCCCcccccCC
Q 044082 151 LSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP-----------------------SINRPSLSSMNSS 207 (243)
Q Consensus 151 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~-----------------------~~~~~~~~~~~~~ 207 (243)
++.+++|..|++++|.+.+.|. .+..+..|+.|+++.|+|. .+.+ ..+...
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~---e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~--~~l~nm- 504 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPE---EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP--SGLKNM- 504 (565)
T ss_pred HHhhhcceeeecccchhhhcch---hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh--HHhhhh-
Confidence 3344556666666666666554 4444555666666666554 3333 234455
Q ss_pred CCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 208 TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 208 ~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
.+|.+||+.+|.+. .+|+.++++.+ |++|++++|
T Consensus 505 ~nL~tLDL~nNdlq-~IPp~Lgnmtn-L~hLeL~gN 538 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQ-QIPPILGNMTN-LRHLELDGN 538 (565)
T ss_pred hhcceeccCCCchh-hCChhhccccc-eeEEEecCC
Confidence 89999999999998 79999999999 999999987
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=1.3e-14 Score=119.99 Aligned_cols=183 Identities=22% Similarity=0.185 Sum_probs=132.1
Q ss_pred CceEEEecCCCCCCCCCCCCcc------cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCC---CcEEecCCcccc
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLR------GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTK---LRFLDLSLANFS 120 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~---L~~L~l~~~~~~ 120 (243)
+.++.++++++ .+. ..++..+.++++|+.|++++|.+... .+..+..+.+ |++|++++|.+.
T Consensus 51 ~~l~~l~l~~~--------~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 51 PSLKELCLSLN--------ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD-GCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred CCceEEecccc--------ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh-HHHHHHHHhccCcccEEEeeCCccc
Confidence 45888888884 443 23456778889999999999998765 5666665555 999999999887
Q ss_pred c----cCCcCCCCC-CCCcEEEccCCccccC----CccccCCCCCCCEEEcCCccccCC--cchHHHhhccccccccccc
Q 044082 121 G----RIPYQLGNL-TNLQSLNLGYNSLYVS----KFGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLA 189 (243)
Q Consensus 121 ~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~ 189 (243)
+ .+...+..+ ++|+.|++++|.+++. .+..+..+.+|++|++++|.+.+. +.++..+...++|++|+++
T Consensus 122 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 201 (319)
T cd00116 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201 (319)
T ss_pred hHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEecc
Confidence 3 222344566 8899999999998843 234466678899999999998854 3334456666799999999
Q ss_pred cccCCCCCCC--CcccccCCCCCcEEECCCCccccccchhHHhh-----hccCceeeCCCC
Q 044082 190 SSTLPSINRP--SLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI-----SSNLLALDLNSN 243 (243)
Q Consensus 190 ~n~~~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l-----~~~L~~L~l~~N 243 (243)
+|.+.+.... ...+... ++|+.|++++|.+++.....+... +. |++|++++|
T Consensus 202 ~n~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~-L~~L~l~~n 260 (319)
T cd00116 202 NNGLTDEGASALAETLASL-KSLEVLNLGDNNLTDAGAAALASALLSPNIS-LLTLSLSCN 260 (319)
T ss_pred CCccChHHHHHHHHHhccc-CCCCEEecCCCcCchHHHHHHHHHHhccCCC-ceEEEccCC
Confidence 9988754320 0123344 889999999999987555545443 46 999999876
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.43 E-value=1.2e-15 Score=124.54 Aligned_cols=157 Identities=25% Similarity=0.254 Sum_probs=103.0
Q ss_pred ccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccC
Q 044082 73 NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLS 152 (243)
Q Consensus 73 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 152 (243)
..|+.++.+..+..+++.+|.+... .|..+. |+.|++++...|-+. .+|+.++.+.+|+.|++..|++.. .| .|+
T Consensus 151 slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~ 225 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LP-EFP 225 (565)
T ss_pred cCchHHHHHHHHHHhhccccchhhC-CHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CC-CCC
Confidence 3555566666666666666666653 333333 666666666666555 666666666667777777776653 34 366
Q ss_pred CCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhh
Q 044082 153 HLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS 232 (243)
Q Consensus 153 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~ 232 (243)
.+..|..+.++.|.|.-.|+ +..++++++..|++.+|++...+. .+..+ .+|+.||+++|.|+ ..|..++++
T Consensus 226 gcs~L~Elh~g~N~i~~lpa--e~~~~L~~l~vLDLRdNklke~Pd---e~clL-rsL~rLDlSNN~is-~Lp~sLgnl- 297 (565)
T KOG0472|consen 226 GCSLLKELHVGENQIEMLPA--EHLKHLNSLLVLDLRDNKLKEVPD---EICLL-RSLERLDLSNNDIS-SLPYSLGNL- 297 (565)
T ss_pred ccHHHHHHHhcccHHHhhHH--HHhcccccceeeeccccccccCch---HHHHh-hhhhhhcccCCccc-cCCcccccc-
Confidence 66666777777776666653 355677777888888888776543 45555 77888888888887 467777777
Q ss_pred ccCceeeCCCC
Q 044082 233 SNLLALDLNSN 243 (243)
Q Consensus 233 ~~L~~L~l~~N 243 (243)
+ |+.|.+.||
T Consensus 298 h-L~~L~leGN 307 (565)
T KOG0472|consen 298 H-LKFLALEGN 307 (565)
T ss_pred e-eeehhhcCC
Confidence 5 777777765
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=1.1e-14 Score=118.54 Aligned_cols=82 Identities=24% Similarity=0.263 Sum_probs=61.4
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCC-ccccccCCc-CC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSL-ANFSGRIPY-QL 127 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~-~l 127 (243)
...+.++|.. |+|+...+.+|+.+++|+.|||+.|.|+.. -|+.|.+++.+..|-+.+ |.|+ .+|. .|
T Consensus 67 ~~tveirLdq--------N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F 136 (498)
T KOG4237|consen 67 PETVEIRLDQ--------NQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT-DLPKGAF 136 (498)
T ss_pred CcceEEEecc--------CCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh-hhhhhHh
Confidence 5678888888 688877788999999999999999999987 899999999987766555 8887 3333 34
Q ss_pred CCCCCCcEEEccCC
Q 044082 128 GNLTNLQSLNLGYN 141 (243)
Q Consensus 128 ~~l~~L~~L~l~~n 141 (243)
.++..++-|.+.-|
T Consensus 137 ~gL~slqrLllNan 150 (498)
T KOG4237|consen 137 GGLSSLQRLLLNAN 150 (498)
T ss_pred hhHHHHHHHhcChh
Confidence 44444444443333
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.42 E-value=3.4e-14 Score=126.23 Aligned_cols=181 Identities=26% Similarity=0.310 Sum_probs=112.3
Q ss_pred CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCC---------------------CcchhhcCCC
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGN---------------------PIPEFIGFFT 107 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~~~~~l~ 107 (243)
...++.+|++.+ .+++ +|..++.+.+|+.++...|.++.. .+|+....++
T Consensus 240 p~nl~~~dis~n--------~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~ 310 (1081)
T KOG0618|consen 240 PLNLQYLDISHN--------NLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLK 310 (1081)
T ss_pred cccceeeecchh--------hhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccc
Confidence 356677777773 4443 446666666666666666665431 1344445566
Q ss_pred CCcEEecCCccccccCCcC-C-------------------------CCCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082 108 KLRFLDLSLANFSGRIPYQ-L-------------------------GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD 161 (243)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~-l-------------------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 161 (243)
+|++|++..|.+. .+|.. + ..++.|+.|.+.+|+++......+.++.+|++|+
T Consensus 311 sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 311 SLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred eeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 6666666666554 21110 0 0123345555555555554444466778899999
Q ss_pred cCCccccCCcchHHHhhccccccccccccccCCCCCC-------------------CCcccccCCCCCcEEECCCCcccc
Q 044082 162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINR-------------------PSLSSMNSSTSLALLDLSSCGLSN 222 (243)
Q Consensus 162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------~~~~~~~~~~~L~~L~L~~n~i~~ 222 (243)
+++|.+..+|+ ..+.++..|++|+|++|+++.++. ..+.+..+ +.|+.+|++.|+++.
T Consensus 390 LsyNrL~~fpa--s~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l-~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 390 LSYNRLNSFPA--SKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQL-PQLKVLDLSCNNLSE 466 (1081)
T ss_pred ecccccccCCH--HHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhc-CcceEEecccchhhh
Confidence 99999998876 578888999999999998875421 01244455 888999999998874
Q ss_pred ccchhHHhhhccCceeeCCCC
Q 044082 223 SAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 223 ~~~~~l~~l~~~L~~L~l~~N 243 (243)
-........++ |++||++||
T Consensus 467 ~~l~~~~p~p~-LkyLdlSGN 486 (1081)
T KOG0618|consen 467 VTLPEALPSPN-LKYLDLSGN 486 (1081)
T ss_pred hhhhhhCCCcc-cceeeccCC
Confidence 32221222255 999999987
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.41 E-value=2.2e-12 Score=123.00 Aligned_cols=34 Identities=35% Similarity=0.539 Sum_probs=25.2
Q ss_pred CCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 208 TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 208 ~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
.+|+.|++++|.|+ .+|.++..+++ |+.|++++|
T Consensus 846 ~nL~~L~Ls~n~i~-~iP~si~~l~~-L~~L~L~~C 879 (1153)
T PLN03210 846 TNISDLNLSRTGIE-EVPWWIEKFSN-LSFLDMNGC 879 (1153)
T ss_pred cccCEeECCCCCCc-cChHHHhcCCC-CCEEECCCC
Confidence 46777777777777 57777888877 888877653
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=2.3e-14 Score=127.33 Aligned_cols=148 Identities=25% Similarity=0.267 Sum_probs=106.0
Q ss_pred CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCc-CCCCCCCCcEEEccCCccccCCccccCCCCCCCEE
Q 044082 82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY-QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQL 160 (243)
Q Consensus 82 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 160 (243)
..|+.|++.+|.++.. .-+.+..+++|+.|++++|.+. .+|. .+.+++.|++|++++|+++ .+|..+..+..|++|
T Consensus 359 ~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred HHHHHHHHhcCccccc-chhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 3455566666666665 4445667888888888888887 5554 5778888888888888887 456777888888888
Q ss_pred EcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeC
Q 044082 161 DLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDL 240 (243)
Q Consensus 161 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l 240 (243)
...+|.+...| .+..++.|+.++++.|.++.... ...... ++|++||+++|.-...--+.+..+.. +..+++
T Consensus 436 ~ahsN~l~~fP----e~~~l~qL~~lDlS~N~L~~~~l--~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~-l~~~~i 507 (1081)
T KOG0618|consen 436 RAHSNQLLSFP----ELAQLPQLKVLDLSCNNLSEVTL--PEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKS-LSQMDI 507 (1081)
T ss_pred hhcCCceeech----hhhhcCcceEEecccchhhhhhh--hhhCCC-cccceeeccCCcccccchhhhHHhhh-hhheec
Confidence 88888887776 46678899999999999887654 444555 89999999999743223334444444 444443
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.40 E-value=2.5e-12 Score=122.73 Aligned_cols=89 Identities=30% Similarity=0.272 Sum_probs=43.5
Q ss_pred hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
++.+++|+.|++++|..... +|..+..+++|+.|++++|.....+|..+ .+++|++|++++|......|.. ..+|
T Consensus 653 ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL 727 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNI 727 (1153)
T ss_pred cccCCcccEEEecCCCCccc-cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCc
Confidence 44555555555555543333 55555555555555555543333444433 4555555555555433233321 2345
Q ss_pred CEEEcCCccccCCc
Q 044082 158 TQLDLDFVDLSEAS 171 (243)
Q Consensus 158 ~~L~l~~n~l~~~~ 171 (243)
+.|++.+|.+...|
T Consensus 728 ~~L~L~~n~i~~lP 741 (1153)
T PLN03210 728 SWLDLDETAIEEFP 741 (1153)
T ss_pred CeeecCCCcccccc
Confidence 55666666555443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=1.2e-12 Score=118.03 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 208 TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 208 ~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
.+|+.|++++|+|+ .+|..+..++. |+.|++++|
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~-L~~LdLs~N 455 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSS-ETTVNLEGN 455 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccC-CCeEECCCC
Confidence 35666777777777 67888888888 899998887
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=2.8e-12 Score=116.04 Aligned_cols=162 Identities=22% Similarity=0.264 Sum_probs=94.1
Q ss_pred ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCC
Q 044082 51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNL 130 (243)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 130 (243)
.++.|+|++ |.++ .+|..+. .+|+.|++++|.++. +|..+. .+|+.|++++|.+. .+|..+.
T Consensus 200 ~L~~L~Ls~--------N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~-- 261 (754)
T PRK15370 200 QITTLILDN--------NELK-SLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRIT-ELPERLP-- 261 (754)
T ss_pred CCcEEEecC--------CCCC-cCChhhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccC-cCChhHh--
Confidence 455555555 4555 3444333 467777777777765 555442 35777777777766 5555442
Q ss_pred CCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcc-hHHHh---------------hccccccccccccccCC
Q 044082 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASD-WLQVI---------------TSLASLRDLYLASSTLP 194 (243)
Q Consensus 131 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~---------------~~l~~L~~L~l~~n~~~ 194 (243)
.+|+.|++++|.++. +|..+. .+|+.|++++|.++..|. ++..+ ...++|+.|++++|.++
T Consensus 262 s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 262 SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT 338 (754)
T ss_pred CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc
Confidence 357777777777763 454443 467777777777766542 11000 01134555555555555
Q ss_pred CCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 195 SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 195 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+++. .+ .++|+.|++++|+|+ .+|..+. +. |++|++++|
T Consensus 339 ~LP~---~l---~~sL~~L~Ls~N~L~-~LP~~lp--~~-L~~LdLs~N 377 (754)
T PRK15370 339 SLPA---SL---PPELQVLDVSKNQIT-VLPETLP--PT-ITTLDVSRN 377 (754)
T ss_pred cCCh---hh---cCcccEEECCCCCCC-cCChhhc--CC-cCEEECCCC
Confidence 4322 11 157888888888887 4665542 45 888888876
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=2.4e-14 Score=121.39 Aligned_cols=162 Identities=27% Similarity=0.281 Sum_probs=139.0
Q ss_pred CCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcccc
Q 044082 66 PNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYV 145 (243)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 145 (243)
..|.+. ++|..+..+-.|+.+.++.|.+.. +|..++.+..|.+++++.|.+. .+|..+..++ |+.|.+++|+++
T Consensus 83 srNR~~-elp~~~~~f~~Le~liLy~n~~r~--ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~- 156 (722)
T KOG0532|consen 83 SRNRFS-ELPEEACAFVSLESLILYHNCIRT--IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT- 156 (722)
T ss_pred cccccc-cCchHHHHHHHHHHHHHHhcccee--cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-
Confidence 335655 688888888889999998888876 7889999999999999999999 8888887776 999999999998
Q ss_pred CCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccc
Q 044082 146 SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAY 225 (243)
Q Consensus 146 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~ 225 (243)
.+|..++...+|..|+.+.|.+...+. .+..+.+|+.|.+..|.+...++ .+..+ .|..||+++|+|+ .+|
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~slps---ql~~l~slr~l~vrRn~l~~lp~---El~~L--pLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSLPS---QLGYLTSLRDLNVRRNHLEDLPE---ELCSL--PLIRLDFSCNKIS-YLP 227 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhchH---HhhhHHHHHHHHHhhhhhhhCCH---HHhCC--ceeeeecccCcee-ecc
Confidence 467778888899999999999999876 88899999999999999887654 55544 6899999999998 799
Q ss_pred hhHHhhhccCceeeCCCC
Q 044082 226 HWLFKISSNLLALDLNSN 243 (243)
Q Consensus 226 ~~l~~l~~~L~~L~l~~N 243 (243)
-.|.++.+ |++|-|.+|
T Consensus 228 v~fr~m~~-Lq~l~LenN 244 (722)
T KOG0532|consen 228 VDFRKMRH-LQVLQLENN 244 (722)
T ss_pred hhhhhhhh-heeeeeccC
Confidence 99999999 999998877
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=4e-12 Score=115.07 Aligned_cols=159 Identities=21% Similarity=0.248 Sum_probs=99.4
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|++++| .++ .+|..+. .+|+.|++++|.+.. +|..+. .+|++|++++|.+. .+|..+.
T Consensus 220 ~nL~~L~Ls~N--------~Lt-sLP~~l~--~~L~~L~Ls~N~L~~--LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~- 282 (754)
T PRK15370 220 GNIKTLYANSN--------QLT-SIPATLP--DTIQEMELSINRITE--LPERLP--SALQSLDLFHNKIS-CLPENLP- 282 (754)
T ss_pred cCCCEEECCCC--------ccc-cCChhhh--ccccEEECcCCccCc--CChhHh--CCCCEEECcCCccC-ccccccC-
Confidence 46788888884 444 2343332 346666666666553 444432 35566666666555 3444332
Q ss_pred CCCCcEEEccCCccccC--------------------CccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccc
Q 044082 130 LTNLQSLNLGYNSLYVS--------------------KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLA 189 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~--------------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 189 (243)
++|++|++++|.++.. +|..+ .++|+.|++++|.++.+|. .+ .++|+.|+++
T Consensus 283 -~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~---~l--~~sL~~L~Ls 354 (754)
T PRK15370 283 -EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPA---SL--PPELQVLDVS 354 (754)
T ss_pred -CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccCCccccCCh---hh--cCcccEEECC
Confidence 3455555555554431 12212 2568888888888877754 33 3689999999
Q ss_pred cccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 190 SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 190 ~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+|+++.++. .+ . ++|+.|++++|.++ .+|..+.. . |+.|++++|
T Consensus 355 ~N~L~~LP~---~l--p-~~L~~LdLs~N~Lt-~LP~~l~~--s-L~~LdLs~N 398 (754)
T PRK15370 355 KNQITVLPE---TL--P-PTITTLDVSRNALT-NLPENLPA--A-LQIMQASRN 398 (754)
T ss_pred CCCCCcCCh---hh--c-CCcCEEECCCCcCC-CCCHhHHH--H-HHHHhhccC
Confidence 999986533 22 2 68999999999999 57776543 4 888888876
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.30 E-value=1.6e-13 Score=111.80 Aligned_cols=179 Identities=20% Similarity=0.158 Sum_probs=117.8
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccC-CCCCCC-----------------------CcchhhcC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSV-NDFLGN-----------------------PIPEFIGF 105 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~-----------------------~~~~~~~~ 105 (243)
.++++|||+.| +|+..-|.+|.+++.+..|-+.+ |+|+.. ...+.+..
T Consensus 91 ~~LRrLdLS~N--------~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 91 HRLRRLDLSKN--------NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred hhhceeccccc--------chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence 68899999995 66655566666666655543333 555542 03344556
Q ss_pred CCCCcEEecCCccccccCCc-CCCCCCCCcEEEccCCc------------------------------------------
Q 044082 106 FTKLRFLDLSLANFSGRIPY-QLGNLTNLQSLNLGYNS------------------------------------------ 142 (243)
Q Consensus 106 l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~------------------------------------------ 142 (243)
++++..|.+..|.+. .++. .+..+..++++.+..|.
T Consensus 163 L~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a 241 (498)
T KOG4237|consen 163 LPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA 241 (498)
T ss_pred hhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccch
Confidence 666666666666665 3333 45555666666555544
Q ss_pred -------------------cccCCc-cccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcc
Q 044082 143 -------------------LYVSKF-GWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLS 202 (243)
Q Consensus 143 -------------------l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 202 (243)
.....| ..|..+++|+.|++++|.++.+.+ .++.....+++|.|..|++..+.. ..
T Consensus 242 ~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~--~aFe~~a~l~eL~L~~N~l~~v~~--~~ 317 (498)
T KOG4237|consen 242 RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED--GAFEGAAELQELYLTRNKLEFVSS--GM 317 (498)
T ss_pred hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh--hhhcchhhhhhhhcCcchHHHHHH--Hh
Confidence 000011 125566788888888888888843 477888888888888888876655 45
Q ss_pred cccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 203 SMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 203 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+..+ ..|++|+|.+|+|+...|..|..+.. |.+|.+-.|
T Consensus 318 f~~l-s~L~tL~L~~N~it~~~~~aF~~~~~-l~~l~l~~N 356 (498)
T KOG4237|consen 318 FQGL-SGLKTLSLYDNQITTVAPGAFQTLFS-LSTLNLLSN 356 (498)
T ss_pred hhcc-ccceeeeecCCeeEEEecccccccce-eeeeehccC
Confidence 5555 88899999999998767777777777 888877655
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.28 E-value=1.1e-12 Score=98.30 Aligned_cols=86 Identities=29% Similarity=0.390 Sum_probs=20.0
Q ss_pred CCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccc
Q 044082 106 FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD 185 (243)
Q Consensus 106 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 185 (243)
+.+|+.|++++|.+. .+. .+..++.|++|++++|+++...+.....+++|+.|++++|.|.+..+ ...+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNE-LEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCC-CGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHH-hHHHHcCCCcce
Confidence 344444444444444 221 23334444444444444443211101123444444444444444322 123334444444
Q ss_pred cccccccCC
Q 044082 186 LYLASSTLP 194 (243)
Q Consensus 186 L~l~~n~~~ 194 (243)
|++.+|.+.
T Consensus 118 L~L~~NPv~ 126 (175)
T PF14580_consen 118 LSLEGNPVC 126 (175)
T ss_dssp EE-TT-GGG
T ss_pred eeccCCccc
Confidence 444444433
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.27 E-value=1e-11 Score=93.02 Aligned_cols=126 Identities=29% Similarity=0.366 Sum_probs=54.1
Q ss_pred CCCCCcEEecCCccccccCCcCCC-CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHh-hcccc
Q 044082 105 FFTKLRFLDLSLANFSGRIPYQLG-NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVI-TSLAS 182 (243)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~ 182 (243)
+..++++|++++|.+. .+. .++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.|+.... .+ ..+++
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~---~l~~~lp~ 89 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE---GLDKNLPN 89 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH---HHHHH-TT
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc---chHHhCCc
Confidence 4457889999999888 433 354 578999999999999864 347889999999999999999853 33 46899
Q ss_pred ccccccccccCCCCCCCCcccccCCCCCcEEECCCCcccccc---chhHHhhhccCceeeC
Q 044082 183 LRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSA---YHWLFKISSNLLALDL 240 (243)
Q Consensus 183 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~---~~~l~~l~~~L~~L~l 240 (243)
|++|.+++|++...... ..+..+ ++|+.|++.+|.++... ...+..+|+ |+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l-~~L~~l-~~L~~L~L~~NPv~~~~~YR~~vi~~lP~-Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNEL-EPLSSL-PKLRVLSLEGNPVCEKKNYRLFVIYKLPS-LKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCC-GGGGG--TT--EEE-TT-GGGGSTTHHHHHHHH-TT--SEETT
T ss_pred CCEEECcCCcCCChHHh-HHHHcC-CCcceeeccCCcccchhhHHHHHHHHcCh-hheeCC
Confidence 99999999999876542 345555 99999999999998532 235788898 999885
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=4e-11 Score=108.39 Aligned_cols=126 Identities=20% Similarity=0.139 Sum_probs=83.4
Q ss_pred CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEc
Q 044082 83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL 162 (243)
Q Consensus 83 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 162 (243)
+|++|++++|.++. +|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.++. +|.. .++|+.|++
T Consensus 343 ~Lq~LdLS~N~Ls~--LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL 409 (788)
T PRK15387 343 GLQELSVSDNQLAS--LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMV 409 (788)
T ss_pred ccceEecCCCccCC--CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence 45555555555544 3322 134445555555555 33432 2457788888888774 3432 357888888
Q ss_pred CCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhh
Q 044082 163 DFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI 231 (243)
Q Consensus 163 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l 231 (243)
++|.+..+|.+ ..+|+.|++++|+++.+ | ..+..+ ++|+.|+|++|.+++..+..+..+
T Consensus 410 S~N~LssIP~l------~~~L~~L~Ls~NqLt~L-P--~sl~~L-~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 410 SGNRLTSLPML------PSGLLSLSVYRNQLTRL-P--ESLIHL-SSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred cCCcCCCCCcc------hhhhhhhhhccCccccc-C--hHHhhc-cCCCeEECCCCCCCchHHHHHHHH
Confidence 88888877642 23678899999999865 4 466777 999999999999998888777554
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2e-11 Score=104.08 Aligned_cols=170 Identities=31% Similarity=0.367 Sum_probs=98.5
Q ss_pred ceEEEecCCCCCCCCCCCCcccccchhhccCC-CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQ-HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.++.+++.+ |.+. .+++....+. +|+.|++++|.+.. +|..+..++.|+.|+++.|.+. .+|...+.
T Consensus 117 ~l~~L~l~~--------n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~ 184 (394)
T COG4886 117 NLTSLDLDN--------NNIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN 184 (394)
T ss_pred ceeEEecCC--------cccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhh-hhhhhhhh
Confidence 345555555 3433 3444445553 66666666666655 4455666666666666666666 44444445
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
.+.|+.|++++|++.. +|........|+.+.+++|.+...+. .+..+.++..+.+.+|++...+ ..+... ++
T Consensus 185 ~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~~~~~~---~~~~~l-~~ 256 (394)
T COG4886 185 LSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNNKLEDLP---ESIGNL-SN 256 (394)
T ss_pred hhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCceeeecc---chhccc-cc
Confidence 5666666666666653 23323334446666666664333322 4455555666666666554421 234444 67
Q ss_pred CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
++.|++++|.++ .++. ++.+.. ++.|++++|
T Consensus 257 l~~L~~s~n~i~-~i~~-~~~~~~-l~~L~~s~n 287 (394)
T COG4886 257 LETLDLSNNQIS-SISS-LGSLTN-LRELDLSGN 287 (394)
T ss_pred cceecccccccc-cccc-ccccCc-cCEEeccCc
Confidence 888888888888 4544 777777 888888764
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.11 E-value=2.2e-10 Score=102.81 Aligned_cols=107 Identities=28% Similarity=0.342 Sum_probs=68.3
Q ss_pred CcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcC
Q 044082 84 LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163 (243)
Q Consensus 84 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 163 (243)
++.|+|++|.+.+. +|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|+.++.+++|++|+++
T Consensus 420 v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 55666677766665 66666677777777777777766666666667777777777777766666666667777777777
Q ss_pred CccccCC-cchHHHhhc-cccccccccccccCC
Q 044082 164 FVDLSEA-SDWLQVITS-LASLRDLYLASSTLP 194 (243)
Q Consensus 164 ~n~l~~~-~~~~~~~~~-l~~L~~L~l~~n~~~ 194 (243)
+|.+.+. |. .+.. ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~---~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPA---ALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCCh---HHhhccccCceEEecCCccc
Confidence 7766654 33 3332 234455566665443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.1e-11 Score=102.45 Aligned_cols=178 Identities=22% Similarity=0.236 Sum_probs=117.3
Q ss_pred CCceEEEecCCCCCCCCCCCCccc--ccchhhccCCCCcEEEccCCCCCCCCcc-hhhcCCCCCcEEecCCcccccc-CC
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRG--NINSSLLELQHLNYLDLSVNDFLGNPIP-EFIGFFTKLRFLDLSLANFSGR-IP 124 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~ 124 (243)
.++|+.|||+.| -+.. .+......+++|+.|+++.|.+... .. ..-..+++|+.|.++.|.++.. +.
T Consensus 145 ~~~v~~LdLS~N--------L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~-~~s~~~~~l~~lK~L~l~~CGls~k~V~ 215 (505)
T KOG3207|consen 145 LPNVRDLDLSRN--------LFHNWFPVLKIAEQLPSLENLNLSSNRLSNF-ISSNTTLLLSHLKQLVLNSCGLSWKDVQ 215 (505)
T ss_pred CCcceeecchhh--------hHHhHHHHHHHHHhcccchhcccccccccCC-ccccchhhhhhhheEEeccCCCCHHHHH
Confidence 357888888883 4332 2334556788888888888887542 11 1122567788888888887732 22
Q ss_pred cCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCccc-
Q 044082 125 YQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSS- 203 (243)
Q Consensus 125 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~- 203 (243)
..+..+|+|+.|++..|............+..|+.|++++|.+.+.+. ......++.|+.|+++.+.+..+.. +..
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~-~~~~~~l~~L~~Lnls~tgi~si~~--~d~~ 292 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ-GYKVGTLPGLNQLNLSSTGIASIAE--PDVE 292 (505)
T ss_pred HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc-ccccccccchhhhhccccCcchhcC--CCcc
Confidence 234567888888888884221212223345789999999999988864 2367788999999999998887654 333
Q ss_pred ----ccCCCCCcEEECCCCccccccc--hhHHhhhccCceeeC
Q 044082 204 ----MNSSTSLALLDLSSCGLSNSAY--HWLFKISSNLLALDL 240 (243)
Q Consensus 204 ----~~~~~~L~~L~L~~n~i~~~~~--~~l~~l~~~L~~L~l 240 (243)
...+++|+.|++..|+|.+ .+ ..+..+++ |+.|.+
T Consensus 293 s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~n-lk~l~~ 333 (505)
T KOG3207|consen 293 SLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLEN-LKHLRI 333 (505)
T ss_pred chhhhcccccceeeecccCcccc-ccccchhhccch-hhhhhc
Confidence 3445899999999999963 32 23444444 555543
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=6.5e-12 Score=99.56 Aligned_cols=136 Identities=30% Similarity=0.293 Sum_probs=104.4
Q ss_pred hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082 76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN 155 (243)
Q Consensus 76 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 155 (243)
..+-.++.|+.+|+++|.|+. +..++.-.++++.|++++|.+. .+.. ++.+++|++||+++|.++.. ..+-..+.
T Consensus 278 ~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KLG 352 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKLG 352 (490)
T ss_pred EecchHhhhhhccccccchhh--hhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhh-hhhHhhhc
Confidence 344456778889999998876 6677777889999999999887 4333 77889999999999987643 34445667
Q ss_pred CCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCcccc
Q 044082 156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSN 222 (243)
Q Consensus 156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 222 (243)
++++|.++.|.+.+.. .+.++-+|..|++++|++...... ..++.+ +-|+++.|.+|.+.+
T Consensus 353 NIKtL~La~N~iE~LS----GL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~L-PCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLS----GLRKLYSLVNLDLSSNQIEELDEV-NHIGNL-PCLETLRLTGNPLAG 413 (490)
T ss_pred CEeeeehhhhhHhhhh----hhHhhhhheeccccccchhhHHHh-cccccc-cHHHHHhhcCCCccc
Confidence 8888899998887773 567778888999999988765431 356777 888999999998874
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=2.5e-11 Score=97.69 Aligned_cols=183 Identities=19% Similarity=0.138 Sum_probs=111.7
Q ss_pred ceEEEecCCCCCCCCCCCCcccccc----hhhccCCCCcEEEccCCCCCCCCcc-------------hhhcCCCCCcEEe
Q 044082 51 HVIMLNLKYKVDPVCPNRPLRGNIN----SSLLELQHLNYLDLSVNDFLGNPIP-------------EFIGFFTKLRFLD 113 (243)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~~l~~L~~L~ 113 (243)
+++.||||+| -|.-..+ ..++....|+.|.|.+|.+... -- .....-++|+++.
T Consensus 93 ~L~~ldLSDN--------A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 93 KLQKLDLSDN--------AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE-AGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred ceeEeecccc--------ccCccchHHHHHHHHhccCHHHHhhhcCCCChh-HHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 5666666663 3332222 2334456666666666665432 11 1122344566666
Q ss_pred cCCccccccC----CcCCCCCCCCcEEEccCCccccCC----ccccCCCCCCCEEEcCCccccCC--cchHHHhhccccc
Q 044082 114 LSLANFSGRI----PYQLGNLTNLQSLNLGYNSLYVSK----FGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASL 183 (243)
Q Consensus 114 l~~~~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L 183 (243)
.++|.+.... ...++..+.|+.+.++.|.+.... ...+..+++|+.|++++|.++.. -.+.+.+..++.|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 6666655221 123445566777777777665432 24466788899999999988765 3356677888889
Q ss_pred cccccccccCCCCCCC--CcccccCCCCCcEEECCCCcccccc----chhHHhhhccCceeeCCCC
Q 044082 184 RDLYLASSTLPSINRP--SLSSMNSSTSLALLDLSSCGLSNSA----YHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 184 ~~L~l~~n~~~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~----~~~l~~l~~~L~~L~l~~N 243 (243)
+.|++++|.+...... ...+....++|+.+.+.+|.|+... ...+...+. |..|++++|
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d-L~kLnLngN 308 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD-LEKLNLNGN 308 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh-hHHhcCCcc
Confidence 9999999888754330 0122223378999999999887542 234455666 888888877
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=1e-10 Score=94.26 Aligned_cols=165 Identities=21% Similarity=0.192 Sum_probs=116.6
Q ss_pred hhccCCCCcEEEccCCCCCCCC---cchhhcCCCCCcEEecCCcccccc-------------CCcCCCCCCCCcEEEccC
Q 044082 77 SLLELQHLNYLDLSVNDFLGNP---IPEFIGFFTKLRFLDLSLANFSGR-------------IPYQLGNLTNLQSLNLGY 140 (243)
Q Consensus 77 ~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~-------------~~~~l~~l~~L~~L~l~~ 140 (243)
.+.+.++|++++||+|.+.... +...+.++..|++|.+.+|.+... .....+.-+.|+.+..++
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 3345678999999999886551 223456788899999999987622 222345668899999999
Q ss_pred CccccCCc----cccCCCCCCCEEEcCCccccCC--cchHHHhhccccccccccccccCCCCCC--CCcccccCCCCCcE
Q 044082 141 NSLYVSKF----GWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASSTLPSINR--PSLSSMNSSTSLAL 212 (243)
Q Consensus 141 n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~L~~ 212 (243)
|++..... ..+...+.|+.+.+..|.|... ..+...+..++.|+.|++.+|.|+.... ....+..+ +.|+.
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-~~L~E 245 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-PHLRE 245 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-chhee
Confidence 98764322 3456678899999999988655 2356678899999999999998875432 11233444 78999
Q ss_pred EECCCCccccccchhHHh-----hhccCceeeCCCC
Q 044082 213 LDLSSCGLSNSAYHWLFK-----ISSNLLALDLNSN 243 (243)
Q Consensus 213 L~L~~n~i~~~~~~~l~~-----l~~~L~~L~l~~N 243 (243)
|++++|.+.......+.+ .|. |+.+.+++|
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~-L~vl~l~gN 280 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPS-LEVLELAGN 280 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCC-CceeccCcc
Confidence 999999987655444432 355 888888876
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=9.5e-11 Score=93.03 Aligned_cols=135 Identities=24% Similarity=0.219 Sum_probs=109.9
Q ss_pred CCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCC
Q 044082 48 RTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQL 127 (243)
Q Consensus 48 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 127 (243)
.+..++.+|||+ |.|+ .+-+++.-++.++.|+++.|.+... +.+..+++|+.||+++|.+. .+...-
T Consensus 282 TWq~LtelDLS~--------N~I~-~iDESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls-~~~Gwh 348 (490)
T KOG1259|consen 282 TWQELTELDLSG--------NLIT-QIDESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLA-ECVGWH 348 (490)
T ss_pred hHhhhhhccccc--------cchh-hhhhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhH-hhhhhH
Confidence 345789999999 4555 4666778889999999999999763 44889999999999999988 444434
Q ss_pred CCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCC
Q 044082 128 GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINR 198 (243)
Q Consensus 128 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 198 (243)
-++.++++|.+++|.+... +.+..+.+|.+|++.+|.|....+ ...+++++.|+++.|.+|.+.+.+.
T Consensus 349 ~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccch
Confidence 4678899999999988643 447788899999999999988854 3578999999999999999887653
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=8.9e-12 Score=106.06 Aligned_cols=148 Identities=28% Similarity=0.260 Sum_probs=129.5
Q ss_pred CCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEE
Q 044082 81 LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQL 160 (243)
Q Consensus 81 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 160 (243)
+.--...|++.|++.. +|..++.+..|+.+.+..|.+. .+|..+..+..|.+|+++.|+++. +|..++.++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeE
Confidence 3445568999999877 7888999999999999999999 899999999999999999999984 566567666 9999
Q ss_pred EcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeC
Q 044082 161 DLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDL 240 (243)
Q Consensus 161 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l 240 (243)
-+++|+++..|+ .++...+|.+|+.+.|.+...+. .++.+ .+|+.|.+..|++. .+|+.+..++ |..||+
T Consensus 149 i~sNNkl~~lp~---~ig~~~tl~~ld~s~nei~slps---ql~~l-~slr~l~vrRn~l~-~lp~El~~Lp--Li~lDf 218 (722)
T KOG0532|consen 149 IVSNNKLTSLPE---EIGLLPTLAHLDVSKNEIQSLPS---QLGYL-TSLRDLNVRRNHLE-DLPEELCSLP--LIRLDF 218 (722)
T ss_pred EEecCccccCCc---ccccchhHHHhhhhhhhhhhchH---HhhhH-HHHHHHHHhhhhhh-hCCHHHhCCc--eeeeec
Confidence 999999999976 67788999999999999987765 77888 99999999999998 6888899887 999999
Q ss_pred CCC
Q 044082 241 NSN 243 (243)
Q Consensus 241 ~~N 243 (243)
++|
T Consensus 219 ScN 221 (722)
T KOG0532|consen 219 SCN 221 (722)
T ss_pred ccC
Confidence 987
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=5.2e-10 Score=95.43 Aligned_cols=154 Identities=35% Similarity=0.455 Sum_probs=123.0
Q ss_pred hhccCCCCcEEEccCCCCCCCCcchhhcCCC-CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082 77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFT-KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN 155 (243)
Q Consensus 77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 155 (243)
.+..++.++.+++.+|.++. ++.....+. +|+.|+++.|.+. .+|..+..++.|+.|++++|++... |...+..+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~ 186 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLS 186 (394)
T ss_pred hhhcccceeEEecCCccccc--Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhh
Confidence 45666889999999999987 677777774 9999999999998 7767788899999999999999854 44344778
Q ss_pred CCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccC
Q 044082 156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNL 235 (243)
Q Consensus 156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L 235 (243)
.|+.|++++|.+...+. .......|+++.+++|.....+. .+... .++..+.+.+|++. ..+..++.++. +
T Consensus 187 ~L~~L~ls~N~i~~l~~---~~~~~~~L~~l~~~~N~~~~~~~---~~~~~-~~l~~l~l~~n~~~-~~~~~~~~l~~-l 257 (394)
T COG4886 187 NLNNLDLSGNKISDLPP---EIELLSALEELDLSNNSIIELLS---SLSNL-KNLSGLELSNNKLE-DLPESIGNLSN-L 257 (394)
T ss_pred hhhheeccCCccccCch---hhhhhhhhhhhhhcCCcceecch---hhhhc-ccccccccCCceee-eccchhccccc-c
Confidence 99999999999999975 44566679999999996433332 45555 78888889999988 45777888888 9
Q ss_pred ceeeCCCC
Q 044082 236 LALDLNSN 243 (243)
Q Consensus 236 ~~L~l~~N 243 (243)
++|++++|
T Consensus 258 ~~L~~s~n 265 (394)
T COG4886 258 ETLDLSNN 265 (394)
T ss_pred ceeccccc
Confidence 99999876
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.9e-09 Score=66.71 Aligned_cols=59 Identities=34% Similarity=0.372 Sum_probs=28.2
Q ss_pred CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCcc
Q 044082 108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD 166 (243)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 166 (243)
+|++|++++|.+....+..+..+++|++|++++|.++...+..|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555554443323344445555555555555544444444555555555555444
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2.4e-09 Score=66.24 Aligned_cols=61 Identities=36% Similarity=0.443 Sum_probs=42.4
Q ss_pred CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcc
Q 044082 82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSL 143 (243)
Q Consensus 82 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 143 (243)
++|++|++++|.+... .+..|..+++|++|++++|.+....+..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777664 445667777777777777777755555677777777777777753
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.5e-09 Score=89.96 Aligned_cols=167 Identities=19% Similarity=0.110 Sum_probs=115.5
Q ss_pred CCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcC
Q 044082 47 NRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126 (243)
Q Consensus 47 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 126 (243)
...++++.|+|+.|++....++..+ ..+++|+.|.++.|.++...+...+..+|+|+.|++..|.........
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~-------~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~ 241 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTT-------LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS 241 (505)
T ss_pred HhcccchhcccccccccCCccccch-------hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch
Confidence 3468999999999644322222222 256789999999999986656677788999999999998532233333
Q ss_pred CCCCCCCcEEEccCCccccC-CccccCCCCCCCEEEcCCccccCC--cc--hHHHhhccccccccccccccCCCCCCCCc
Q 044082 127 LGNLTNLQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVDLSEA--SD--WLQVITSLASLRDLYLASSTLPSINRPSL 201 (243)
Q Consensus 127 l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~--~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 201 (243)
..-+..|+.|++++|.+-.. .....+.++.|+.|+++.+.+.++ ++ ...-....++|++|++..|++...... .
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl-~ 320 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL-N 320 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc-c
Confidence 44567799999998876532 234577888999999999998877 22 011135668999999999998765431 1
Q ss_pred ccccCCCCCcEEECCCCcccc
Q 044082 202 SSMNSSTSLALLDLSSCGLSN 222 (243)
Q Consensus 202 ~~~~~~~~L~~L~L~~n~i~~ 222 (243)
.+..+ ++|..+.+..|.++.
T Consensus 321 ~l~~l-~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 321 HLRTL-ENLKHLRITLNYLNK 340 (505)
T ss_pred hhhcc-chhhhhhcccccccc
Confidence 22333 778888888887753
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.66 E-value=3.9e-08 Score=56.11 Aligned_cols=40 Identities=53% Similarity=1.007 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhccc-CCCCCCCCCCCCCC-CCCCcccceEEec
Q 044082 5 EKERQALLMFKQGLV-DDCGYLSSWGSDEG-RKDCCKWSGVQCS 46 (243)
Q Consensus 5 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~-~~~~~~~~~~~c~ 46 (243)
+.|++||++||+++. +|.+.+.+|.. . ..++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 579999999999996 67788899994 2 2799999999994
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.60 E-value=1.6e-08 Score=93.39 Aligned_cols=89 Identities=38% Similarity=0.428 Sum_probs=73.2
Q ss_pred hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082 76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN 155 (243)
Q Consensus 76 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 155 (243)
..|..++.|++||+++|.-.+. +|+.++++-+|++|+++++.+. .+|..++++..|.+|++..+.-....+.....+.
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred HHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 3477799999999998876665 8999999999999999999998 8999999999999999988765444466566688
Q ss_pred CCCEEEcCCcc
Q 044082 156 KLTQLDLDFVD 166 (243)
Q Consensus 156 ~L~~L~l~~n~ 166 (243)
+|++|.+....
T Consensus 643 ~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 643 SLRVLRLPRSA 653 (889)
T ss_pred cccEEEeeccc
Confidence 99999887655
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.4e-10 Score=88.60 Aligned_cols=179 Identities=23% Similarity=0.213 Sum_probs=104.4
Q ss_pred CceEEEecCCCCCCCCCCCCcc-cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCcc-ccccCCc-C
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLR-GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLAN-FSGRIPY-Q 126 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~-~ 126 (243)
.+++.+||+.. .++ ......++.+.+|+.|.+.++.+... +...+++...|+.|+++.+. ++..... .
T Consensus 185 sRlq~lDLS~s--------~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 185 SRLQHLDLSNS--------VITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhhHHhhcchh--------heeHHHHHHHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHH
Confidence 46788888874 444 34455667778888888888887775 77777788888888887764 3322111 2
Q ss_pred CCCCCCCcEEEccCCccccCCccc-cCCC-CCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCCCCccc
Q 044082 127 LGNLTNLQSLNLGYNSLYVSKFGW-LSHL-NKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINRPSLSS 203 (243)
Q Consensus 127 l~~l~~L~~L~l~~n~l~~~~~~~-l~~l-~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 203 (243)
+..+..|+.|+++++.+....... +.+. .+|..|+++++...-. ..+.....++++|.+|+|++|..-.... ...+
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~ 334 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEF 334 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHH
Confidence 456777888888888765432211 1111 3566777776643322 2233345677777777777764322111 1233
Q ss_pred ccCCCCCcEEECCCCccccccch---hHHhhhccCceeeCCC
Q 044082 204 MNSSTSLALLDLSSCGLSNSAYH---WLFKISSNLLALDLNS 242 (243)
Q Consensus 204 ~~~~~~L~~L~L~~n~i~~~~~~---~l~~l~~~L~~L~l~~ 242 (243)
.+. +.|++|.++.|-. .+|. .+...|. |.+||+-+
T Consensus 335 ~kf-~~L~~lSlsRCY~--i~p~~~~~l~s~ps-l~yLdv~g 372 (419)
T KOG2120|consen 335 FKF-NYLQHLSLSRCYD--IIPETLLELNSKPS-LVYLDVFG 372 (419)
T ss_pred Hhc-chheeeehhhhcC--CChHHeeeeccCcc-eEEEEecc
Confidence 344 7777777766532 2233 2344455 66666543
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=1.7e-09 Score=94.90 Aligned_cols=126 Identities=27% Similarity=0.280 Sum_probs=72.2
Q ss_pred CcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccc-cCCCCCCCEEEc
Q 044082 84 LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGW-LSHLNKLTQLDL 162 (243)
Q Consensus 84 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l 162 (243)
|...+.++|.+.. +...+.-++.|++|++++|++. .+. .+..+++|++||+++|.++.. |.- -.. ..|+.|.+
T Consensus 166 L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~v-p~l~~~g-c~L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSYNRLVL--MDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHV-PQLSMVG-CKLQLLNL 239 (1096)
T ss_pred HhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhccc-cccchhh-hhheeeee
Confidence 4445555555543 3444555666777777777666 333 556667777777777766532 221 111 23667777
Q ss_pred CCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082 163 DFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS 221 (243)
Q Consensus 163 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 221 (243)
++|.++..- .+.++.+|+.|++++|-+.+.... ..++.+ ..|+.|+|.+|.+.
T Consensus 240 rnN~l~tL~----gie~LksL~~LDlsyNll~~hseL-~pLwsL-s~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTLR----GIENLKSLYGLDLSYNLLSEHSEL-EPLWSL-SSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhhh----hHHhhhhhhccchhHhhhhcchhh-hHHHHH-HHHHHHhhcCCccc
Confidence 777666652 345666677777777766654431 122333 66677777777664
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=1.1e-09 Score=96.07 Aligned_cols=111 Identities=36% Similarity=0.377 Sum_probs=66.7
Q ss_pred hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCC
Q 044082 77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNK 156 (243)
Q Consensus 77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 156 (243)
++.-++.++.|||+.|+++.. +.+..+++|++||+++|.+. .+|..-.-=..|+.|.+.+|.++... .+.++.+
T Consensus 182 SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~--gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLR--GIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhh--hHHhhhh
Confidence 344456667777777776653 25666777777777777766 55543211123677777777665432 2556666
Q ss_pred CCEEEcCCccccCCcchHHHhhccccccccccccccCC
Q 044082 157 LTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP 194 (243)
Q Consensus 157 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~ 194 (243)
|+.||+++|-+.+..+ ...+..+..|+.|.|.+|.+-
T Consensus 256 L~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCccc
Confidence 7777777777666643 234555666777777776654
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.49 E-value=2.3e-08 Score=85.93 Aligned_cols=109 Identities=29% Similarity=0.375 Sum_probs=59.9
Q ss_pred hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
+..+++++.+++.+|.+.. +...+..+++|++|++++|.|+... .+..++.|+.|++++|.+... +.+..+..|
T Consensus 91 l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhh--cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhh
Confidence 4555666666666666655 2333555666666666666665322 233445566666666666532 224445666
Q ss_pred CEEEcCCccccCCcchHHHhhccccccccccccccCC
Q 044082 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP 194 (243)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~ 194 (243)
+.+++++|.+...... . ...+.+++.+.+.+|.+.
T Consensus 165 ~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhhhhhh-h-hhhccchHHHhccCCchh
Confidence 6666666666655310 0 345555556666655544
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.48 E-value=2.7e-07 Score=69.51 Aligned_cols=108 Identities=22% Similarity=0.236 Sum_probs=66.8
Q ss_pred CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccc
Q 044082 108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187 (243)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 187 (243)
....+|++.|.+. .. ..+..++.|.+|.+.+|+++...|..-..+++|..|.+.+|+|..+.+ ...+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-l~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-LDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh-cchhccCCccceee
Confidence 4556666666655 22 234566777777777777776655544455667777777777776643 23566777777777
Q ss_pred cccccCCCCCCCCcccccCCCCCcEEECCCC
Q 044082 188 LASSTLPSINRPSLSSMNSSTSLALLDLSSC 218 (243)
Q Consensus 188 l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n 218 (243)
+-+|.++.....+..+...+++|+.||++.-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777766544322333333377777777643
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4.2e-09 Score=83.66 Aligned_cols=160 Identities=24% Similarity=0.227 Sum_probs=112.0
Q ss_pred CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCc-cccCCc-cccCCCCCCCE
Q 044082 82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNS-LYVSKF-GWLSHLNKLTQ 159 (243)
Q Consensus 82 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~ 159 (243)
..|+++|+++..++...+...+..+.+|+.|.+.++.+.+.+...++.-..|+.|+++.+. ++.-.. --+..++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3488899999888765466677888899999999999988888888888899999998764 332111 12457788999
Q ss_pred EEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCccc-ccCCCCCcEEECCCC-ccccccchhHHhhhccCce
Q 044082 160 LDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSS-MNSSTSLALLDLSSC-GLSNSAYHWLFKISSNLLA 237 (243)
Q Consensus 160 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~L~~L~L~~n-~i~~~~~~~l~~l~~~L~~ 237 (243)
|+++++.+....-....-.--++|+.|+++++.-.-.......+ ..+ ++|.+|||++| .++......|.+++- |++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc-p~l~~LDLSD~v~l~~~~~~~~~kf~~-L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFKFNY-LQH 342 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC-CceeeeccccccccCchHHHHHHhcch-hee
Confidence 99999887655211112223368899999887532111100122 344 99999999886 566666777888887 999
Q ss_pred eeCCCC
Q 044082 238 LDLNSN 243 (243)
Q Consensus 238 L~l~~N 243 (243)
|.++.|
T Consensus 343 lSlsRC 348 (419)
T KOG2120|consen 343 LSLSRC 348 (419)
T ss_pred eehhhh
Confidence 988754
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=5.3e-08 Score=83.65 Aligned_cols=131 Identities=30% Similarity=0.299 Sum_probs=101.6
Q ss_pred ccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCC
Q 044082 79 LELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLT 158 (243)
Q Consensus 79 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 158 (243)
..+..++.+++..|.+.. .-..+..+++|+.+++..|.+. .+...+..+++|++|++++|.|+...+ +..+..|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchh
Confidence 345667777788888765 3455788899999999999998 444447788999999999999986533 67777899
Q ss_pred EEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082 159 QLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS 221 (243)
Q Consensus 159 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 221 (243)
.|++.+|.|..+.. +..+..|+.+++++|.+..+.. .....+ .+++.+++.+|.+.
T Consensus 144 ~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~--~~~~~~-~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 144 ELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIEN--DELSEL-ISLEELDLGGNSIR 199 (414)
T ss_pred hheeccCcchhccC----CccchhhhcccCCcchhhhhhh--hhhhhc-cchHHHhccCCchh
Confidence 99999999998863 4458899999999999886543 102444 78888888888876
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=1.6e-07 Score=74.80 Aligned_cols=84 Identities=26% Similarity=0.273 Sum_probs=53.6
Q ss_pred CceEEEecCCCCCCCCCCCCccc--ccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccC-CcC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRG--NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRI-PYQ 126 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~ 126 (243)
.+|..+||.+ |.++. ++...+.+|+.|++|+++.|.+.+. +...-..+.+|++|-+.+..+.... .+.
T Consensus 71 ~~v~elDL~~--------N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 71 TDVKELDLTG--------NLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred hhhhhhhccc--------chhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhh
Confidence 3566667776 46652 4555567788888888888877653 2221134567777777777665333 334
Q ss_pred CCCCCCCcEEEccCCc
Q 044082 127 LGNLTNLQSLNLGYNS 142 (243)
Q Consensus 127 l~~l~~L~~L~l~~n~ 142 (243)
+..+|.++.|.++.|.
T Consensus 142 l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS 157 (418)
T ss_pred hhcchhhhhhhhccch
Confidence 5677788888887774
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=2.8e-08 Score=70.35 Aligned_cols=91 Identities=29% Similarity=0.296 Sum_probs=52.9
Q ss_pred hhccCCCCcEEEccCCCCCCCCcchhh-cCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082 77 SLLELQHLNYLDLSVNDFLGNPIPEFI-GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN 155 (243)
Q Consensus 77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 155 (243)
.+....+|+..++++|.+.. +|+.| ..++.++.+++.+|.++ .+|..++.++.|+.|++..|.+.. .|..+..+.
T Consensus 48 ~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~ 123 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLI 123 (177)
T ss_pred HHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHH
Confidence 34445556666667766665 33333 34456666666666666 566666666666666666666653 344444455
Q ss_pred CCCEEEcCCccccCCc
Q 044082 156 KLTQLDLDFVDLSEAS 171 (243)
Q Consensus 156 ~L~~L~l~~n~l~~~~ 171 (243)
++..|+..+|.+..++
T Consensus 124 ~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 124 KLDMLDSPENARAEID 139 (177)
T ss_pred hHHHhcCCCCccccCc
Confidence 6666666666665553
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=7e-07 Score=70.38 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=7.2
Q ss_pred CceEEEecCCC
Q 044082 50 GHVIMLNLKYK 60 (243)
Q Consensus 50 ~~l~~L~l~~~ 60 (243)
..++.+|||||
T Consensus 30 d~~~evdLSGN 40 (388)
T COG5238 30 DELVEVDLSGN 40 (388)
T ss_pred cceeEEeccCC
Confidence 34667777774
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.25 E-value=1e-06 Score=81.71 Aligned_cols=105 Identities=31% Similarity=0.353 Sum_probs=56.9
Q ss_pred CCcEEEccCCC--CCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEE
Q 044082 83 HLNYLDLSVND--FLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQL 160 (243)
Q Consensus 83 ~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 160 (243)
.|+.|-+.+|. +... ....|..++.|+.||+++|.-.+.+|..++.+.+|++|++++..+. .+|..++++..|.+|
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 45555555553 2221 2333555666666666665544566666666666666666666665 445556666666666
Q ss_pred EcCCccccCCcchHHHhhccccccccccccc
Q 044082 161 DLDFVDLSEASDWLQVITSLASLRDLYLASS 191 (243)
Q Consensus 161 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 191 (243)
++..+...... +.....+.+|++|.+...
T Consensus 624 nl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccc--cchhhhcccccEEEeecc
Confidence 66555443331 123444566666655443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=5.3e-06 Score=47.38 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=19.9
Q ss_pred CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCcccc
Q 044082 83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFS 120 (243)
Q Consensus 83 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 120 (243)
+|++|++++|.++. +|..++.|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence 45666666666654 4555566666666666666555
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.06 E-value=6.9e-07 Score=80.82 Aligned_cols=143 Identities=22% Similarity=0.268 Sum_probs=76.6
Q ss_pred CCCcEEEccCCCCCCCCcchhhc-CCCCCcEEecCCcccc-ccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCE
Q 044082 82 QHLNYLDLSVNDFLGNPIPEFIG-FFTKLRFLDLSLANFS-GRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQ 159 (243)
Q Consensus 82 ~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 159 (243)
.+|++|++++...-...-|..++ .+|.|+.|.+++-.+. +.+.....++|+|..||+++..++.. ..++.+.+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 55666666665432221233333 4566777776665443 22233344566677777777666543 34566666666
Q ss_pred EEcCCccccCCcchHHHhhccccccccccccccCCCCCC---CCcccccCCCCCcEEECCCCccccccchh
Q 044082 160 LDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINR---PSLSSMNSSTSLALLDLSSCGLSNSAYHW 227 (243)
Q Consensus 160 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 227 (243)
|.+.+-.+.....+ ..+-.+++|+.||+|..+...... ....-+..+|+|+.||.+++.+...+.+.
T Consensus 200 L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 200 LSMRNLEFESYQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HhccCCCCCchhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 66666666554332 244556677777776654433210 00011222377777777777766554443
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=1.8e-06 Score=68.18 Aligned_cols=86 Identities=23% Similarity=0.285 Sum_probs=55.0
Q ss_pred CCceEEEecCCCCCCCCCCCCcccc-----------cchhhccCCCCcEEEccCCCCCCCCcc----hhhcCCCCCcEEe
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGN-----------INSSLLELQHLNYLDLSVNDFLGNPIP----EFIGFFTKLRFLD 113 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~ 113 (243)
...++..++++ -++|. +-+.+.+++.|+..++++|.+... .| +.+++-+.|.+|.
T Consensus 57 ~~~L~vvnfsd---------~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~ 126 (388)
T COG5238 57 VRNLRVVNFSD---------AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE-FPEELGDLISSSTDLVHLK 126 (388)
T ss_pred hcceeEeehhh---------hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc-cchHHHHHHhcCCCceeEE
Confidence 45677777777 44442 224556778888888888887655 44 3455667788888
Q ss_pred cCCccccccCCc-------------CCCCCCCCcEEEccCCccc
Q 044082 114 LSLANFSGRIPY-------------QLGNLTNLQSLNLGYNSLY 144 (243)
Q Consensus 114 l~~~~~~~~~~~-------------~l~~l~~L~~L~l~~n~l~ 144 (243)
+++|.+...... ..+.-|.|++.....|++.
T Consensus 127 l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 127 LNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred eecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 888876522111 1234567777777777743
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=3.1e-06 Score=76.66 Aligned_cols=109 Identities=23% Similarity=0.267 Sum_probs=57.6
Q ss_pred CCCcEEecCCccc-cccCCcCCC-CCCCCcEEEccCCccccC-CccccCCCCCCCEEEcCCccccCCcchHHHhhccccc
Q 044082 107 TKLRFLDLSLANF-SGRIPYQLG-NLTNLQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASL 183 (243)
Q Consensus 107 ~~L~~L~l~~~~~-~~~~~~~l~-~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 183 (243)
.+|++|++++... ....|..++ -+|+|++|.+.+-.+... ......++++|..||+++..++.. ..++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence 3466666665432 112222333 346666666666554332 122334566666667766666666 255666666
Q ss_pred cccccccccCCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082 184 RDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS 221 (243)
Q Consensus 184 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 221 (243)
+.|.+.+-.+...... ..+..+ ++|+.||+|.....
T Consensus 198 q~L~mrnLe~e~~~~l-~~LF~L-~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDL-IDLFNL-KKLRVLDISRDKNN 233 (699)
T ss_pred HHHhccCCCCCchhhH-HHHhcc-cCCCeeeccccccc
Confidence 6666666555432110 234444 66677776665443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=5.2e-05 Score=64.12 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=17.2
Q ss_pred CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCc
Q 044082 83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLA 117 (243)
Q Consensus 83 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~ 117 (243)
+|+.|.++++.-... +|+.+ .++|++|.+++|
T Consensus 73 sLtsL~Lsnc~nLts-LP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLTT-LPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCccc-CCchh--hhhhhheEccCc
Confidence 466666665433222 44433 245666677666
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.94 E-value=3.3e-06 Score=66.08 Aligned_cols=40 Identities=33% Similarity=0.340 Sum_probs=17.1
Q ss_pred CCCCCcEEecCCc--cccccCCcCCCCCCCCcEEEccCCccc
Q 044082 105 FFTKLRFLDLSLA--NFSGRIPYQLGNLTNLQSLNLGYNSLY 144 (243)
Q Consensus 105 ~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~n~l~ 144 (243)
.|++|+.|.++.| .+.+.++...-.+|+|+++.++.|++.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444555555544 333222222223344555555555443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=1.5e-05 Score=60.28 Aligned_cols=124 Identities=26% Similarity=0.314 Sum_probs=87.4
Q ss_pred CcEEecCCccccccCCcCCC-CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCC-cchHHHhhcccccccc
Q 044082 109 LRFLDLSLANFSGRIPYQLG-NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDL 186 (243)
Q Consensus 109 L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L 186 (243)
=+.+++++..+. .... ++ -+.+...+|+++|.+... ..|..++.|.+|.+..|.|+.+ |. .-.-+++|..|
T Consensus 21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~---L~~~~p~l~~L 93 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPD---LDTFLPNLKTL 93 (233)
T ss_pred cccccccccccc-chhh-ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccc---hhhhccccceE
Confidence 344556555544 1111 22 245678899999988643 3488899999999999999999 43 33445789999
Q ss_pred ccccccCCCCCCCCcccccCCCCCcEEECCCCcccccc---chhHHhhhccCceeeCCC
Q 044082 187 YLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSA---YHWLFKISSNLLALDLNS 242 (243)
Q Consensus 187 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~---~~~l~~l~~~L~~L~l~~ 242 (243)
.|.+|.+...... ..+..+ ++|+.|.+-+|.++..- -..+..+|+ |+.||+..
T Consensus 94 ~LtnNsi~~l~dl-~pLa~~-p~L~~Ltll~Npv~~k~~YR~yvl~klp~-l~~LDF~k 149 (233)
T KOG1644|consen 94 ILTNNSIQELGDL-DPLASC-PKLEYLTLLGNPVEHKKNYRLYVLYKLPS-LRTLDFQK 149 (233)
T ss_pred EecCcchhhhhhc-chhccC-CccceeeecCCchhcccCceeEEEEecCc-ceEeehhh
Confidence 9999988765431 345556 99999999999987532 235677888 99999863
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.2e-05 Score=45.90 Aligned_cols=39 Identities=33% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCc
Q 044082 132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEAS 171 (243)
Q Consensus 132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 171 (243)
+|++|++++|+++. +|..++.+++|++|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCc
Confidence 45666666666653 3334566666666666666665553
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=1e-06 Score=62.56 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=72.7
Q ss_pred CCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCC
Q 044082 48 RTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQL 127 (243)
Q Consensus 48 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 127 (243)
...+++.++|++ |.+..-.++...+++.++.+++++|.+.. +|.++..++.|+.++++.|.+. ..|..+
T Consensus 51 ~~~el~~i~ls~--------N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~-~~p~vi 119 (177)
T KOG4579|consen 51 KGYELTKISLSD--------NGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLN-AEPRVI 119 (177)
T ss_pred CCceEEEEeccc--------chhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccc-cchHHH
Confidence 346788899999 58775444455677799999999999988 7999999999999999999999 778777
Q ss_pred CCCCCCcEEEccCCcccc
Q 044082 128 GNLTNLQSLNLGYNSLYV 145 (243)
Q Consensus 128 ~~l~~L~~L~l~~n~l~~ 145 (243)
..+.++..|+..+|....
T Consensus 120 ~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 120 APLIKLDMLDSPENARAE 137 (177)
T ss_pred HHHHhHHHhcCCCCcccc
Confidence 778889999998887653
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=3e-05 Score=62.13 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=89.6
Q ss_pred CCcccceEEec-CCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEec
Q 044082 36 DCCKWSGVQCS-NRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDL 114 (243)
Q Consensus 36 ~~~~~~~~~c~-~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 114 (243)
....|..+.|. ...++++.|+++. |.+...+-..=..+.+|+.|-+.+..+........+..+|.++.|.+
T Consensus 82 ~iSdWseI~~ile~lP~l~~LNls~--------N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 82 LISDWSEIGAILEQLPALTTLNLSC--------NSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred hhccHHHHHHHHhcCccceEeeccC--------CcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 35578877664 4568999999999 57765442211567889999999998876656677788888889888
Q ss_pred CCcccccc-----CCcCC-------C-----------------CCCCCcEEEccCCccccCC-ccccCCCCCCCEEEcCC
Q 044082 115 SLANFSGR-----IPYQL-------G-----------------NLTNLQSLNLGYNSLYVSK-FGWLSHLNKLTQLDLDF 164 (243)
Q Consensus 115 ~~~~~~~~-----~~~~l-------~-----------------~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~ 164 (243)
+.|..... ..+.+ . .+|++..+-+..|.+.... .+....++.+-.|+++.
T Consensus 154 S~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~ 233 (418)
T KOG2982|consen 154 SDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA 233 (418)
T ss_pred ccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc
Confidence 88844311 00000 0 1233333444444332211 12223344555666666
Q ss_pred ccccCCcchHHHhhccccccccccccccCC
Q 044082 165 VDLSEASDWLQVITSLASLRDLYLASSTLP 194 (243)
Q Consensus 165 n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~ 194 (243)
|+|..+.+ .+.+.++++|+.|.++.+.+.
T Consensus 234 ~~idswas-vD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 234 NNIDSWAS-VDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccccHHH-HHHHcCCchhheeeccCCccc
Confidence 66666643 345666666666666666543
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.49 E-value=9.2e-05 Score=58.15 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=52.2
Q ss_pred CCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCC--ccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccc
Q 044082 105 FFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYN--SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLAS 182 (243)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 182 (243)
.+..|+.+.+.+..++ .+ ..+..+++|++|.++.| ++.+..+.....+++|+++++++|.+..+.. ...+..+.+
T Consensus 41 ~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRPLKELEN 117 (260)
T ss_pred cccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cchhhhhcc
Confidence 3344444455444443 11 22345566666666666 4443333333344666666666666655422 224455556
Q ss_pred ccccccccccCCCCCCCCcccccCCCCCcEEE
Q 044082 183 LRDLYLASSTLPSINRPSLSSMNSSTSLALLD 214 (243)
Q Consensus 183 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 214 (243)
|..|++..|..+...-....++.++++|..||
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 66666666655543221223333335555544
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=8.9e-06 Score=64.51 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=52.2
Q ss_pred CCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccc
Q 044082 106 FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD 185 (243)
Q Consensus 106 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 185 (243)
+.+.+.|+.-+|.+.+. +...+|+.|+.|.++-|.|+..-| +..+.+|+.|.|..|.|.++.+ .+.+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhh
Confidence 34455566666665532 123466777777777777765433 5666677777777777776654 346667777777
Q ss_pred cccccccCCC
Q 044082 186 LYLASSTLPS 195 (243)
Q Consensus 186 L~l~~n~~~~ 195 (243)
|.|..|...+
T Consensus 93 LWL~ENPCc~ 102 (388)
T KOG2123|consen 93 LWLDENPCCG 102 (388)
T ss_pred HhhccCCccc
Confidence 7776665544
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.43 E-value=0.00043 Score=58.73 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=58.3
Q ss_pred ccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCC-ccccCCcccc
Q 044082 73 NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYN-SLYVSKFGWL 151 (243)
Q Consensus 73 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l 151 (243)
.+...+..+++++.|++++|.++. +|. -..+|++|.+++|.-...+|..+ .++|++|.+++| .+. .+|
T Consensus 43 ~a~~r~~~~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP--- 111 (426)
T PRK15386 43 EITPQIEEARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP--- 111 (426)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc---
Confidence 333456667999999999998877 562 12469999999865444666655 357999999988 443 333
Q ss_pred CCCCCCCEEEcCCccccCCc
Q 044082 152 SHLNKLTQLDLDFVDLSEAS 171 (243)
Q Consensus 152 ~~l~~L~~L~l~~n~l~~~~ 171 (243)
.+|+.|++..+....++
T Consensus 112 ---~sLe~L~L~~n~~~~L~ 128 (426)
T PRK15386 112 ---ESVRSLEIKGSATDSIK 128 (426)
T ss_pred ---cccceEEeCCCCCcccc
Confidence 35777777776654443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=1.9e-05 Score=62.65 Aligned_cols=104 Identities=22% Similarity=0.201 Sum_probs=70.3
Q ss_pred ccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC-ccccCCCCCC
Q 044082 79 LELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK-FGWLSHLNKL 157 (243)
Q Consensus 79 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L 157 (243)
+.+.+.++|+..++.+... ....+|+.|+.|.|+-|.|+.. ..+..|.+|++|++..|.|.... ..-+.++++|
T Consensus 16 sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred hHHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3456677788888887653 4456788888888888887732 23567888888888888776432 2346778888
Q ss_pred CEEEcCCccccCC-c-c-hHHHhhccccccccc
Q 044082 158 TQLDLDFVDLSEA-S-D-WLQVITSLASLRDLY 187 (243)
Q Consensus 158 ~~L~l~~n~l~~~-~-~-~~~~~~~l~~L~~L~ 187 (243)
++|=+..|...+. + . =...+.-+++|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888888776654 1 1 123456667777665
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.78 E-value=0.008 Score=42.49 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=13.1
Q ss_pred hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecC
Q 044082 77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS 115 (243)
Q Consensus 77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 115 (243)
.+.++++|+.+.+..+ +... -...+..+++++.+.+.
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEET
T ss_pred hccccccccccccccc-cccc-ceeeeeccccccccccc
Confidence 3444444555544443 2221 12233444444444443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.66 E-value=0.0071 Score=42.75 Aligned_cols=106 Identities=12% Similarity=0.156 Sum_probs=44.6
Q ss_pred hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCC
Q 044082 77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNK 156 (243)
Q Consensus 77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 156 (243)
.|.+.++|+.+.+.. .+... -...|..+++|+.+.+..+ +.......+..++.++.+.+.. .+.......+..+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 345555666666654 23332 2344556666777776654 4423333455565667776654 332223344555666
Q ss_pred CCEEEcCCccccCCcchHHHhhcccccccccccc
Q 044082 157 LTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190 (243)
Q Consensus 157 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 190 (243)
|+.+.+..+ +...+. ..+..+ .|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~--~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGS--SSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHT--TTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEch--hhhcCC-CceEEEECC
Confidence 666666543 433321 134444 555555443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.11 E-value=0.002 Score=30.65 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=16.0
Q ss_pred CCcEEECCCCccccccchhHHh
Q 044082 209 SLALLDLSSCGLSNSAYHWLFK 230 (243)
Q Consensus 209 ~L~~L~L~~n~i~~~~~~~l~~ 230 (243)
+|+.||+++|+|+ .+|+++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4788888888888 77776544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.29 E-value=0.0099 Score=28.20 Aligned_cols=11 Identities=45% Similarity=0.697 Sum_probs=4.1
Q ss_pred cEEecCCcccc
Q 044082 110 RFLDLSLANFS 120 (243)
Q Consensus 110 ~~L~l~~~~~~ 120 (243)
++|++++|.++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.77 E-value=0.019 Score=27.78 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=16.5
Q ss_pred CCCcEEECCCCccccccchhHH
Q 044082 208 TSLALLDLSSCGLSNSAYHWLF 229 (243)
Q Consensus 208 ~~L~~L~L~~n~i~~~~~~~l~ 229 (243)
++|++|+|++|.|++.....++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 7899999999999987776664
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.76 E-value=0.00027 Score=61.57 Aligned_cols=181 Identities=25% Similarity=0.259 Sum_probs=103.0
Q ss_pred eEEEecCCCCCCCCCCCCcccc----cchhhccCCCCcEEEccCCCCCCCCcc---hhhcCC-CCCcEEecCCccccccC
Q 044082 52 VIMLNLKYKVDPVCPNRPLRGN----INSSLLELQHLNYLDLSVNDFLGNPIP---EFIGFF-TKLRFLDLSLANFSGRI 123 (243)
Q Consensus 52 l~~L~l~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l-~~L~~L~l~~~~~~~~~ 123 (243)
+..++|..| .+... +...+.....|+.|++++|.+...... ..+... ..+++|.+..|.++...
T Consensus 89 l~~L~L~~~--------~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLANN--------RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred HHHhhhhhC--------ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence 455666663 55432 334556678888888888888654111 112222 44666777777766433
Q ss_pred ----CcCCCCCCCCcEEEccCCcccc----CCccccC----CCCCCCEEEcCCccccCC--cchHHHhhcccc-cccccc
Q 044082 124 ----PYQLGNLTNLQSLNLGYNSLYV----SKFGWLS----HLNKLTQLDLDFVDLSEA--SDWLQVITSLAS-LRDLYL 188 (243)
Q Consensus 124 ----~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~-L~~L~l 188 (243)
...+.....++.+++..|.+.. .++..+. ...++++|.+.+|.++.. ..+...+...++ ++.+++
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence 2334456677788888777531 1122222 456788888888877644 112234445555 666888
Q ss_pred ccccCCCCCCCCcccccCC----CCCcEEECCCCcccccc----chhHHhhhccCceeeCCCC
Q 044082 189 ASSTLPSINRPSLSSMNSS----TSLALLDLSSCGLSNSA----YHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 189 ~~n~~~~~~~~~~~~~~~~----~~L~~L~L~~n~i~~~~----~~~l~~l~~~L~~L~l~~N 243 (243)
..|.+..... ......+ ..++.++++.|.|++.. .+.+..++. ++++.++.|
T Consensus 241 ~~n~l~d~g~--~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~-l~~l~l~~n 300 (478)
T KOG4308|consen 241 ASNKLGDVGV--EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQ-LEELSLSNN 300 (478)
T ss_pred HhcCcchHHH--HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHH-HHHhhcccC
Confidence 8877764311 1111111 45678888888887643 334445554 777776654
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.013 Score=44.64 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=19.4
Q ss_pred CCcEEEccCCccccCCccccCCCCCCCEEEcCCcc
Q 044082 132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD 166 (243)
Q Consensus 132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 166 (243)
.++.++.++..+..+..+.+..++.++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 35566666666655555555555555555555443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.57 E-value=0.05 Score=23.95 Aligned_cols=13 Identities=46% Similarity=0.552 Sum_probs=6.6
Q ss_pred CCcEEECCCCccc
Q 044082 209 SLALLDLSSCGLS 221 (243)
Q Consensus 209 ~L~~L~L~~n~i~ 221 (243)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666777776665
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.41 E-value=0.031 Score=48.70 Aligned_cols=111 Identities=23% Similarity=0.190 Sum_probs=46.2
Q ss_pred CCCCcEEEccCCCCCC-CCcchhhcCCCCCcEEecCCc-cccccCC----cCCCCCCCCcEEEccCCc-cccCCccccCC
Q 044082 81 LQHLNYLDLSVNDFLG-NPIPEFIGFFTKLRFLDLSLA-NFSGRIP----YQLGNLTNLQSLNLGYNS-LYVSKFGWLSH 153 (243)
Q Consensus 81 l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~ 153 (243)
.+.|+.+.+.++.... ..+-.....++.|+.|+++++ ......+ .....+.+|+.|+++++. ++......+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555555543221 111233344555555555542 1110111 122234555555555554 33332222222
Q ss_pred -CCCCCEEEcCCcc-ccCCcchHHHhhcccccccccccccc
Q 044082 154 -LNKLTQLDLDFVD-LSEASDWLQVITSLASLRDLYLASST 192 (243)
Q Consensus 154 -l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~ 192 (243)
+++|+.|.+..+. +++.. +......++.|++|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~g-l~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEG-LVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhH-HHHHHHhcCcccEEeeecCc
Confidence 4455555544444 33332 22233445555555555544
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.99 E-value=0.026 Score=49.17 Aligned_cols=114 Identities=25% Similarity=0.186 Sum_probs=69.4
Q ss_pred CCCCCcEEecCCcccccc--CCcCCCCCCCCcEEEccCC-ccccCC----ccccCCCCCCCEEEcCCcc-ccCCcchHHH
Q 044082 105 FFTKLRFLDLSLANFSGR--IPYQLGNLTNLQSLNLGYN-SLYVSK----FGWLSHLNKLTQLDLDFVD-LSEASDWLQV 176 (243)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~ 176 (243)
.++.|+.+.+..+..... .-.....++.|+.|+++.+ ...... ......+.+|+.++++.+. +++.. +...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HHHH
Confidence 467788888777643322 2234457788888888863 211111 1223455788888888887 55552 2223
Q ss_pred hhcccccccccccccc-CCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082 177 ITSLASLRDLYLASST-LPSINRPSLSSMNSSTSLALLDLSSCGLS 221 (243)
Q Consensus 177 ~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 221 (243)
...+++|++|.+.++. ++.... ..+...++.|++|+++.+...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl--~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGL--VSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHH--HHHHHhcCcccEEeeecCccc
Confidence 3447888888877776 444333 344444478999999877653
No 76
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.96 E-value=0.068 Score=45.28 Aligned_cols=88 Identities=23% Similarity=0.160 Sum_probs=36.7
Q ss_pred CCCCCcEEecCCccccccCC-cCC-CCCCCCcEEEccCCc-cccCCcccc-CCCCCCCEEEcCCccccCCcchHHHhhcc
Q 044082 105 FFTKLRFLDLSLANFSGRIP-YQL-GNLTNLQSLNLGYNS-LYVSKFGWL-SHLNKLTQLDLDFVDLSEASDWLQVITSL 180 (243)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~~~-~~l-~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 180 (243)
.+..|+.++.+++...+..+ ..+ ++.++|+.+.++.++ ++......+ .+.+.|+.+++..+.......+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34445555555443321111 111 234555555555543 222211112 13345555555554433332223333445
Q ss_pred cccccccccccc
Q 044082 181 ASLRDLYLASST 192 (243)
Q Consensus 181 ~~L~~L~l~~n~ 192 (243)
+.|+.+.+++|.
T Consensus 372 ~~lr~lslshce 383 (483)
T KOG4341|consen 372 PRLRVLSLSHCE 383 (483)
T ss_pred chhccCChhhhh
Confidence 555555555543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.81 E-value=0.16 Score=24.85 Aligned_cols=20 Identities=40% Similarity=0.208 Sum_probs=14.8
Q ss_pred CCCcEEECCCCccccccchhH
Q 044082 208 TSLALLDLSSCGLSNSAYHWL 228 (243)
Q Consensus 208 ~~L~~L~L~~n~i~~~~~~~l 228 (243)
++|+.|+|++|+|+ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 67888888888887 566543
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.81 E-value=0.16 Score=24.85 Aligned_cols=20 Identities=40% Similarity=0.208 Sum_probs=14.8
Q ss_pred CCCcEEECCCCccccccchhH
Q 044082 208 TSLALLDLSSCGLSNSAYHWL 228 (243)
Q Consensus 208 ~~L~~L~L~~n~i~~~~~~~l 228 (243)
++|+.|+|++|+|+ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 67888888888887 566543
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=0.038 Score=42.24 Aligned_cols=85 Identities=22% Similarity=0.226 Sum_probs=58.9
Q ss_pred CCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcccc-CCccccC-CCCCCCEEEcCCc-cccCCcchHHHhhccccc
Q 044082 107 TKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYV-SKFGWLS-HLNKLTQLDLDFV-DLSEASDWLQVITSLASL 183 (243)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~-~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L 183 (243)
..++.++.+++.+..+.-..+.++++++.|.+.++.--+ ...+-++ ..++|+.|++++| .|++.. ...+.++++|
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G--L~~L~~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG--LACLLKLKNL 178 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH--HHHHHHhhhh
Confidence 457888888888887777778888889888888886321 1111122 3478999999977 466653 2467788888
Q ss_pred cccccccccC
Q 044082 184 RDLYLASSTL 193 (243)
Q Consensus 184 ~~L~l~~n~~ 193 (243)
+.|.+.+-..
T Consensus 179 r~L~l~~l~~ 188 (221)
T KOG3864|consen 179 RRLHLYDLPY 188 (221)
T ss_pred HHHHhcCchh
Confidence 8888766443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.21 E-value=0.0086 Score=46.79 Aligned_cols=86 Identities=19% Similarity=0.109 Sum_probs=66.3
Q ss_pred CCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCC
Q 044082 48 RTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQL 127 (243)
Q Consensus 48 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 127 (243)
...+++.||++.+ .+. .+-..++.++.+..|+++.|.+.. +|..+.....++.+++..|..+ ..|.++
T Consensus 40 ~~kr~tvld~~s~--------r~v-n~~~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 40 SFKRVTVLDLSSN--------RLV-NLGKNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred ccceeeeehhhhh--------HHH-hhccchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccc
Confidence 3468899999984 544 233456777888888888888766 6778888888888888888888 788888
Q ss_pred CCCCCCcEEEccCCcccc
Q 044082 128 GNLTNLQSLNLGYNSLYV 145 (243)
Q Consensus 128 ~~l~~L~~L~l~~n~l~~ 145 (243)
+..+++++++.-.+.+..
T Consensus 108 ~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cccCCcchhhhccCcchH
Confidence 888888888888887543
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.07 E-value=0.17 Score=43.03 Aligned_cols=160 Identities=21% Similarity=0.170 Sum_probs=82.9
Q ss_pred ceEEEecCCCCCCCCCCCCccccc-chhhccCCCCcEEEccCCCCCCCCcchhh-cCCCCCcEEecCCcc-ccccCCcCC
Q 044082 51 HVIMLNLKYKVDPVCPNRPLRGNI-NSSLLELQHLNYLDLSVNDFLGNPIPEFI-GFFTKLRFLDLSLAN-FSGRIPYQL 127 (243)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~~l 127 (243)
.|..+|+..| +.+++.- -..-..+..|++++.+++.-.+...-..+ ....+|+++-+..|. ++......+
T Consensus 269 ~i~~lnl~~c-------~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l 341 (483)
T KOG4341|consen 269 EILKLNLQHC-------NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML 341 (483)
T ss_pred Hhhccchhhh-------ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh
Confidence 4677777776 4555432 22224456778887777654322122222 356778888887775 333333333
Q ss_pred C-CCCCCcEEEccCCccccC--CccccCCCCCCCEEEcCCccc-cCC--cchHHHhhccccccccccccccCCCCCCCCc
Q 044082 128 G-NLTNLQSLNLGYNSLYVS--KFGWLSHLNKLTQLDLDFVDL-SEA--SDWLQVITSLASLRDLYLASSTLPSINRPSL 201 (243)
Q Consensus 128 ~-~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l-~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 201 (243)
+ +++.|+.+++..+..... +.+.-.+++.|+.+.++.+.. ++. -.+...-..+..|+.+.++++........ .
T Consensus 342 ~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e 420 (483)
T KOG4341|consen 342 GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-E 420 (483)
T ss_pred hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-H
Confidence 3 456777777776653321 222234566777777776543 222 11111223445666666766655432210 2
Q ss_pred ccccCCCCCcEEECCCCc
Q 044082 202 SSMNSSTSLALLDLSSCG 219 (243)
Q Consensus 202 ~~~~~~~~L~~L~L~~n~ 219 (243)
.+..+ ++|+.+++-+++
T Consensus 421 ~l~~c-~~Leri~l~~~q 437 (483)
T KOG4341|consen 421 HLSIC-RNLERIELIDCQ 437 (483)
T ss_pred HHhhC-cccceeeeechh
Confidence 23333 667777665553
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.75 E-value=0.016 Score=45.40 Aligned_cols=92 Identities=12% Similarity=0.022 Sum_probs=68.1
Q ss_pred cCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccc
Q 044082 125 YQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSM 204 (243)
Q Consensus 125 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 204 (243)
..+......+.||++.|++-.. ...++-+..+..++++.|.+.-.|. .+.....++++.+..|.....+ .+.+
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~~~~~---d~~q~~e~~~~~~~~n~~~~~p---~s~~ 108 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIKFLPK---DAKQQRETVNAASHKNNHSQQP---KSQK 108 (326)
T ss_pred hhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHhhChh---hHHHHHHHHHHHhhccchhhCC---cccc
Confidence 3466677788889988887533 3446666778888999888877765 6677778888888888776544 4777
Q ss_pred cCCCCCcEEECCCCcccccc
Q 044082 205 NSSTSLALLDLSSCGLSNSA 224 (243)
Q Consensus 205 ~~~~~L~~L~L~~n~i~~~~ 224 (243)
.. +.++.+++..|.++...
T Consensus 109 k~-~~~k~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 109 KE-PHPKKNEQKKTEFFRKL 127 (326)
T ss_pred cc-CCcchhhhccCcchHHH
Confidence 77 88999999888876433
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.77 E-value=0.46 Score=41.80 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=17.7
Q ss_pred CCCEEEcCCccccCCcchHHHhhccccccccccccc
Q 044082 156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASS 191 (243)
Q Consensus 156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 191 (243)
.+..+++++|.+..+..+.......++|..|+|++|
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 444455555555554333333344455555555555
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.44 E-value=0.59 Score=23.43 Aligned_cols=22 Identities=36% Similarity=0.298 Sum_probs=16.1
Q ss_pred CCCcEEECCCCccccccchhHH
Q 044082 208 TSLALLDLSSCGLSNSAYHWLF 229 (243)
Q Consensus 208 ~~L~~L~L~~n~i~~~~~~~l~ 229 (243)
++|+.|+|++|.|.+.....+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5789999999999765544443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.78 E-value=1.7 Score=21.45 Aligned_cols=14 Identities=43% Similarity=0.470 Sum_probs=12.5
Q ss_pred CCCcEEECCCCccc
Q 044082 208 TSLALLDLSSCGLS 221 (243)
Q Consensus 208 ~~L~~L~L~~n~i~ 221 (243)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 68999999999996
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.19 E-value=0.059 Score=47.24 Aligned_cols=165 Identities=22% Similarity=0.224 Sum_probs=96.6
Q ss_pred CceEEEecCCCCCCCCCCCCcccccc----hhhccC-CCCcEEEccCCCCCCC---CcchhhcCCCCCcEEecCCccccc
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNIN----SSLLEL-QHLNYLDLSVNDFLGN---PIPEFIGFFTKLRFLDLSLANFSG 121 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~----~~~~~l-~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~~~~~~ 121 (243)
..+..|+++++ .+.+.-. ..+... ..+++|.+..|.++.. .+...+.....++.++++.|.+..
T Consensus 115 ~~L~~L~l~~n--------~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~ 186 (478)
T KOG4308|consen 115 PTLGQLDLSGN--------NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIE 186 (478)
T ss_pred ccHhHhhcccC--------CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccch
Confidence 56677888884 5553221 122222 4466677777777654 234555567778888888887642
Q ss_pred c----CCcCC----CCCCCCcEEEccCCccccCCc----cccCCCCC-CCEEEcCCccccCC--cchHHHhhcc-ccccc
Q 044082 122 R----IPYQL----GNLTNLQSLNLGYNSLYVSKF----GWLSHLNK-LTQLDLDFVDLSEA--SDWLQVITSL-ASLRD 185 (243)
Q Consensus 122 ~----~~~~l----~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~-L~~L~l~~n~l~~~--~~~~~~~~~l-~~L~~ 185 (243)
. .+..+ ....++++|.+.+|.++.... ..+....+ ++.+++..|.+.+. ..+.+.+..+ ..+++
T Consensus 187 ~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~ 266 (478)
T KOG4308|consen 187 LGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRV 266 (478)
T ss_pred hhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhh
Confidence 1 12222 246678888888887663211 12333344 55678888887755 2233345555 57788
Q ss_pred cccccccCCCCCCC--CcccccCCCCCcEEECCCCccccc
Q 044082 186 LYLASSTLPSINRP--SLSSMNSSTSLALLDLSSCGLSNS 223 (243)
Q Consensus 186 L~l~~n~~~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~ 223 (243)
++++.|.++..... ...+... +.++.+.++.|.+.+.
T Consensus 267 l~l~~nsi~~~~~~~L~~~l~~~-~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 267 LDLSRNSITEKGVRDLAEVLVSC-RQLEELSLSNNPLTDY 305 (478)
T ss_pred hhhhcCCccccchHHHHHHHhhh-HHHHHhhcccCccccH
Confidence 88888887754430 0122333 6778888888887754
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.26 E-value=2 Score=21.21 Aligned_cols=17 Identities=18% Similarity=0.347 Sum_probs=11.0
Q ss_pred CCCEEEcCCccccCCcc
Q 044082 156 KLTQLDLDFVDLSEASD 172 (243)
Q Consensus 156 ~L~~L~l~~n~l~~~~~ 172 (243)
+|+.|++++|.++..|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666677776666654
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=59.70 E-value=6.5 Score=19.01 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=10.7
Q ss_pred CCCcEEECCCCc-cccc
Q 044082 208 TSLALLDLSSCG-LSNS 223 (243)
Q Consensus 208 ~~L~~L~L~~n~-i~~~ 223 (243)
++|+.|+++.|. |++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 567777777763 6653
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.38 E-value=6.1 Score=35.13 Aligned_cols=36 Identities=33% Similarity=0.402 Sum_probs=15.6
Q ss_pred CCCCcEEEccCCccccCC-cccc-CCCCCCCEEEcCCc
Q 044082 130 LTNLQSLNLGYNSLYVSK-FGWL-SHLNKLTQLDLDFV 165 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~-~~~l-~~l~~L~~L~l~~n 165 (243)
.+.+..+.+++|++.... ...+ ...++|.+|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344555555555544221 0111 12345555555555
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.66 E-value=65 Score=28.51 Aligned_cols=86 Identities=22% Similarity=0.134 Sum_probs=38.1
Q ss_pred CCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccC---CCCCCCEEEcCCccccCC-cchHHHhhcccc
Q 044082 107 TKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLS---HLNKLTQLDLDFVDLSEA-SDWLQVITSLAS 182 (243)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~ 182 (243)
+.+++++++.|.+.+..|..+..-..= +.+..+..+......+. .-..+.+++++.|...+. +........-..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 346666777766665555444321110 23333333222111110 012466677777766554 332222223334
Q ss_pred ccccccccccCC
Q 044082 183 LRDLYLASSTLP 194 (243)
Q Consensus 183 L~~L~l~~n~~~ 194 (243)
+++++.++..++
T Consensus 243 l~~ld~s~tgir 254 (553)
T KOG4242|consen 243 LFKLDRSTTGIR 254 (553)
T ss_pred hhcccccccccc
Confidence 566666555443
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.93 E-value=63 Score=34.94 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=18.9
Q ss_pred ecCCccccccCCcCCCCCCCCcEEEccCCcc
Q 044082 113 DLSLANFSGRIPYQLGNLTNLQSLNLGYNSL 143 (243)
Q Consensus 113 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 143 (243)
||++|.|...-+..|..+++|++|+|.+|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 4566777633333466667777777777654
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.63 E-value=69 Score=34.70 Aligned_cols=32 Identities=25% Similarity=0.181 Sum_probs=25.8
Q ss_pred CCCCCcccccchhhccCCCCcEEEccCCCCCC
Q 044082 65 CPNRPLRGNINSSLLELQHLNYLDLSVNDFLG 96 (243)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 96 (243)
+.+|.|...-+..|..+++|+.|+|++|++.-
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 34478887667788899999999999998754
Done!