Query 044082
Match_columns 243
No_of_seqs 179 out of 2404
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 19:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-34 4E-39 238.2 15.2 221 2-243 2-231 (313)
2 3rgz_A Protein brassinosteroid 100.0 9.2E-31 3.2E-35 238.6 16.4 217 3-243 9-257 (768)
3 4fcg_A Uncharacterized protein 100.0 2.4E-31 8.1E-36 219.9 9.4 230 3-243 24-287 (328)
4 4eco_A Uncharacterized protein 100.0 2.8E-30 9.6E-35 230.8 14.1 217 5-243 29-363 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 2.1E-28 7.2E-33 223.9 12.5 216 5-243 268-605 (876)
6 2o6q_A Variable lymphocyte rec 99.9 7.3E-26 2.5E-30 182.0 16.2 177 52-243 39-215 (270)
7 3m19_A Variable lymphocyte rec 99.9 3.1E-24 1.1E-28 170.6 15.2 148 69-222 46-193 (251)
8 1ogq_A PGIP-2, polygalacturona 99.9 7.2E-25 2.5E-29 179.9 9.9 181 50-243 76-278 (313)
9 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-23 3.9E-28 170.3 15.6 169 68-243 66-235 (285)
10 3rgz_A Protein brassinosteroid 99.9 8.6E-24 2.9E-28 192.7 16.1 169 67-243 475-714 (768)
11 1ozn_A Reticulon 4 receptor; N 99.9 9.1E-24 3.1E-28 170.9 14.4 179 50-243 32-211 (285)
12 2z66_A Variable lymphocyte rec 99.9 7.6E-24 2.6E-28 173.0 12.2 135 103-243 122-258 (306)
13 1p9a_G Platelet glycoprotein I 99.9 1.3E-22 4.6E-27 164.6 15.6 175 50-243 31-205 (290)
14 3rfs_A Internalin B, repeat mo 99.9 5.3E-22 1.8E-26 159.6 17.1 157 78-243 59-215 (272)
15 3zyi_A Leucine-rich repeat-con 99.9 1.7E-22 5.9E-27 173.6 14.6 98 40-146 56-162 (452)
16 3zyj_A Leucine-rich repeat-con 99.9 2.7E-22 9.4E-27 171.8 14.9 96 40-144 45-149 (440)
17 4fcg_A Uncharacterized protein 99.9 1.1E-22 3.9E-27 167.8 11.9 165 68-243 137-311 (328)
18 3m19_A Variable lymphocyte rec 99.9 1.8E-21 6.2E-26 154.6 18.3 187 36-243 3-189 (251)
19 2z66_A Variable lymphocyte rec 99.9 2.3E-22 7.9E-27 164.2 11.5 177 50-243 52-233 (306)
20 2ft3_A Biglycan; proteoglycan, 99.9 9.9E-22 3.4E-26 162.3 15.0 188 37-243 32-274 (332)
21 3v47_A TOLL-like receptor 5B a 99.9 1.1E-21 3.7E-26 168.4 15.0 138 50-197 30-170 (455)
22 2z80_A TOLL-like receptor 2, v 99.9 1.6E-22 5.6E-27 168.3 9.6 194 33-243 25-232 (353)
23 3oja_B Anopheles plasmodium-re 99.9 1.6E-21 5.6E-26 173.0 16.3 106 64-170 81-186 (597)
24 2o6s_A Variable lymphocyte rec 99.9 4.1E-22 1.4E-26 153.9 10.8 176 37-233 6-190 (208)
25 2id5_A Lingo-1, leucine rich r 99.9 3.8E-22 1.3E-26 172.4 11.6 178 50-242 32-209 (477)
26 1wwl_A Monocyte differentiatio 99.9 2E-22 6.9E-27 165.2 9.3 178 50-243 95-284 (312)
27 1xku_A Decorin; proteoglycan, 99.9 3.6E-21 1.2E-25 158.7 16.7 191 37-243 30-250 (330)
28 2z62_A TOLL-like receptor 4, v 99.9 1.1E-21 3.6E-26 158.0 12.8 159 77-243 71-234 (276)
29 2z62_A TOLL-like receptor 4, v 99.9 7E-22 2.4E-26 159.1 11.6 179 50-243 28-210 (276)
30 3o6n_A APL1; leucine-rich repe 99.9 2.9E-21 1E-25 162.8 15.9 104 66-170 77-180 (390)
31 2xwt_C Thyrotropin receptor; s 99.9 2.7E-22 9.1E-27 158.2 8.6 176 50-243 31-215 (239)
32 2z81_A CD282 antigen, TOLL-lik 99.9 5.9E-22 2E-26 173.9 9.6 190 37-243 3-206 (549)
33 3v47_A TOLL-like receptor 5B a 99.9 3.8E-21 1.3E-25 165.0 14.3 129 109-243 277-405 (455)
34 3e6j_A Variable lymphocyte rec 99.9 2.8E-20 9.7E-25 145.8 18.0 162 33-224 14-175 (229)
35 3rfs_A Internalin B, repeat mo 99.9 5.4E-21 1.8E-25 153.7 14.1 161 49-225 62-222 (272)
36 2o6q_A Variable lymphocyte rec 99.9 1.2E-20 4.3E-25 151.4 15.5 190 35-243 2-191 (270)
37 3oja_B Anopheles plasmodium-re 99.9 1.4E-20 4.9E-25 167.0 16.7 185 50-243 75-334 (597)
38 3zyj_A Leucine-rich repeat-con 99.9 6.2E-21 2.1E-25 163.4 13.6 181 50-243 88-289 (440)
39 3vq2_A TLR4, TOLL-like recepto 99.8 2.6E-21 9E-26 171.7 11.3 159 78-243 395-555 (606)
40 3o6n_A APL1; leucine-rich repe 99.8 2.9E-20 1E-24 156.7 17.0 185 50-243 69-328 (390)
41 1wwl_A Monocyte differentiatio 99.8 5.2E-23 1.8E-27 168.7 0.0 211 26-243 22-263 (312)
42 3vq2_A TLR4, TOLL-like recepto 99.8 5.1E-21 1.7E-25 169.9 12.7 179 50-243 32-214 (606)
43 2id5_A Lingo-1, leucine rich r 99.8 6.8E-21 2.3E-25 164.6 13.0 181 49-243 55-258 (477)
44 3t6q_A CD180 antigen; protein- 99.8 1.2E-20 4.1E-25 167.5 14.9 169 68-243 386-557 (606)
45 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-20 7.7E-25 154.1 15.3 180 49-243 77-304 (332)
46 3zyi_A Leucine-rich repeat-con 99.8 8.8E-21 3E-25 163.0 13.2 177 50-243 99-276 (452)
47 4glp_A Monocyte differentiatio 99.8 4.2E-21 1.4E-25 157.2 10.4 178 51-243 92-282 (310)
48 1ziw_A TOLL-like receptor 3; i 99.8 1.5E-20 5E-25 169.1 14.8 177 50-241 25-203 (680)
49 1xku_A Decorin; proteoglycan, 99.8 1.1E-20 3.9E-25 155.7 12.8 175 49-243 75-273 (330)
50 3t6q_A CD180 antigen; protein- 99.8 1.2E-20 3.9E-25 167.6 13.3 170 68-243 360-533 (606)
51 1p9a_G Platelet glycoprotein I 99.8 3.5E-20 1.2E-24 150.4 14.6 174 49-243 9-182 (290)
52 2z80_A TOLL-like receptor 2, v 99.8 2.9E-21 9.7E-26 160.8 8.3 178 49-243 75-287 (353)
53 4g8a_A TOLL-like receptor 4; l 99.8 9.4E-21 3.2E-25 168.4 12.1 161 50-222 52-215 (635)
54 4eco_A Uncharacterized protein 99.8 2.2E-21 7.6E-26 173.3 5.7 176 50-243 249-467 (636)
55 2z63_A TOLL-like receptor 4, v 99.8 2.3E-20 7.8E-25 164.4 11.0 177 50-243 347-528 (570)
56 3o53_A Protein LRIM1, AGAP0063 99.8 6.9E-21 2.3E-25 156.4 6.9 174 51-243 35-224 (317)
57 3oja_A Leucine-rich immune mol 99.8 1.1E-20 3.7E-25 163.9 8.2 173 51-243 35-224 (487)
58 1h6u_A Internalin H; cell adhe 99.8 1.6E-19 5.6E-24 147.6 14.7 165 50-243 63-227 (308)
59 1ziw_A TOLL-like receptor 3; i 99.8 2.3E-19 8E-24 161.3 17.0 180 50-243 405-619 (680)
60 2v9t_B SLIT homolog 2 protein 99.8 1.4E-19 4.9E-24 140.9 13.1 154 53-223 14-167 (220)
61 2z63_A TOLL-like receptor 4, v 99.8 5.3E-20 1.8E-24 162.0 11.5 179 50-243 28-210 (570)
62 1h6u_A Internalin H; cell adhe 99.8 7.4E-19 2.5E-23 143.7 16.8 165 50-243 41-205 (308)
63 3j0a_A TOLL-like receptor 5; m 99.8 5.4E-20 1.8E-24 169.3 10.9 176 37-226 13-192 (844)
64 1h6t_A Internalin B; cell adhe 99.8 3.7E-19 1.3E-23 144.4 14.2 165 50-243 46-210 (291)
65 2xot_A Amphoterin-induced prot 99.8 2.8E-19 9.5E-24 149.4 13.7 155 83-243 40-199 (361)
66 4ezg_A Putative uncharacterize 99.8 2.8E-19 9.6E-24 136.9 12.6 149 51-221 45-194 (197)
67 4ezg_A Putative uncharacterize 99.8 3.7E-19 1.3E-23 136.2 12.1 151 78-243 40-191 (197)
68 2v9t_B SLIT homolog 2 protein 99.8 9.1E-19 3.1E-23 136.4 14.5 149 38-197 11-168 (220)
69 2v70_A SLIT-2, SLIT homolog 2 99.8 4.7E-19 1.6E-23 138.0 12.9 157 53-225 14-170 (220)
70 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.7E-19 1.3E-23 156.8 13.8 153 79-243 350-507 (562)
71 4fmz_A Internalin; leucine ric 99.8 6.6E-19 2.2E-23 146.0 14.1 149 78-243 195-343 (347)
72 2o6s_A Variable lymphocyte rec 99.8 9.5E-19 3.2E-23 135.0 13.9 156 53-225 10-165 (208)
73 4ecn_A Leucine-rich repeat pro 99.8 3.5E-20 1.2E-24 169.8 6.8 176 49-243 447-654 (876)
74 4fmz_A Internalin; leucine ric 99.8 1.8E-18 6E-23 143.4 16.5 149 78-243 173-321 (347)
75 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-18 3.6E-23 136.1 14.2 149 38-198 11-170 (220)
76 2xwt_C Thyrotropin receptor; s 99.8 1.7E-19 5.8E-24 142.1 9.8 175 49-243 54-236 (239)
77 3o53_A Protein LRIM1, AGAP0063 99.8 7.8E-20 2.7E-24 150.1 7.3 128 106-243 119-247 (317)
78 2xot_A Amphoterin-induced prot 99.8 3.5E-19 1.2E-23 148.7 11.1 171 38-222 18-203 (361)
79 3e6j_A Variable lymphocyte rec 99.8 1.6E-18 5.6E-23 135.8 14.0 149 84-243 21-169 (229)
80 2ast_B S-phase kinase-associat 99.8 5.4E-21 1.9E-25 157.8 -0.3 164 74-243 110-282 (336)
81 2z7x_B TOLL-like receptor 1, v 99.8 1.8E-19 6.2E-24 157.2 9.0 127 50-193 21-150 (520)
82 3cvr_A Invasion plasmid antige 99.8 6.1E-19 2.1E-23 155.0 11.3 176 26-243 34-240 (571)
83 2z81_A CD282 antigen, TOLL-lik 99.8 2.1E-19 7.3E-24 157.6 8.1 172 55-243 10-182 (549)
84 2z7x_B TOLL-like receptor 1, v 99.8 2.7E-18 9.3E-23 149.7 14.8 160 49-225 323-485 (520)
85 3j0a_A TOLL-like receptor 5; m 99.8 1.8E-18 6.3E-23 159.1 14.4 167 49-230 47-226 (844)
86 4g8a_A TOLL-like receptor 4; l 99.8 1.8E-18 6.2E-23 153.7 13.6 154 73-233 45-198 (635)
87 2ast_B S-phase kinase-associat 99.8 4.7E-20 1.6E-24 152.2 2.9 180 50-243 70-257 (336)
88 4glp_A Monocyte differentiatio 99.8 2.7E-19 9.1E-24 146.4 7.4 174 49-243 116-304 (310)
89 3oja_A Leucine-rich immune mol 99.8 4.9E-19 1.7E-23 153.5 8.6 129 105-243 118-247 (487)
90 1m9s_A Internalin B; cell inva 99.8 4.3E-18 1.5E-22 150.8 14.5 165 50-243 43-207 (605)
91 4b8c_D Glucose-repressible alc 99.8 1.4E-19 4.8E-24 163.7 4.9 203 5-231 131-339 (727)
92 1xeu_A Internalin C; cellular 99.8 3E-18 1E-22 137.0 11.2 147 50-223 41-187 (263)
93 1o6v_A Internalin A; bacterial 99.8 1.3E-17 4.6E-22 143.7 15.9 148 77-243 238-385 (466)
94 2ca6_A RAN GTPase-activating p 99.8 1.2E-19 4.1E-24 152.7 1.7 184 50-243 94-313 (386)
95 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.2E-17 4.2E-22 147.1 14.5 162 48-225 351-514 (562)
96 3goz_A Leucine-rich repeat-con 99.7 6.2E-19 2.1E-23 147.3 5.5 181 51-243 23-235 (362)
97 1o6v_A Internalin A; bacterial 99.7 3.5E-17 1.2E-21 141.0 15.8 147 78-243 217-363 (466)
98 2ca6_A RAN GTPase-activating p 99.7 2.2E-19 7.5E-24 151.2 1.5 185 50-243 60-284 (386)
99 1h6t_A Internalin B; cell adhe 99.7 2.1E-17 7.1E-22 134.0 12.9 147 78-243 42-188 (291)
100 3bz5_A Internalin-J, INLJ; leu 99.7 5.2E-17 1.8E-21 139.6 15.4 163 50-243 42-222 (457)
101 3goz_A Leucine-rich repeat-con 99.7 2.9E-18 1E-22 143.2 6.8 174 68-243 8-206 (362)
102 3bz5_A Internalin-J, INLJ; leu 99.7 9.4E-17 3.2E-21 138.1 14.9 142 78-243 102-243 (457)
103 4ay9_X Follicle-stimulating ho 99.7 2.5E-17 8.5E-22 137.0 8.5 169 38-221 9-215 (350)
104 1xeu_A Internalin C; cellular 99.7 2.7E-16 9.1E-21 125.7 14.1 163 51-243 20-182 (263)
105 2ell_A Acidic leucine-rich nuc 99.7 5.2E-17 1.8E-21 121.0 9.3 135 50-195 24-161 (168)
106 2je0_A Acidic leucine-rich nuc 99.7 1.1E-16 3.7E-21 116.9 10.1 128 107-242 17-149 (149)
107 1w8a_A SLIT protein; signaling 99.7 1.5E-16 5.1E-21 121.2 11.1 131 53-198 11-143 (192)
108 1m9s_A Internalin B; cell inva 99.7 1.9E-16 6.6E-21 140.3 13.4 149 49-223 64-212 (605)
109 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-18 5.2E-23 149.0 -0.8 167 74-243 219-408 (461)
110 2ell_A Acidic leucine-rich nuc 99.7 1.4E-16 4.8E-21 118.6 9.8 142 79-226 21-164 (168)
111 3g06_A SSPH2 (leucine-rich rep 99.7 5E-17 1.7E-21 144.3 7.1 158 33-222 17-195 (622)
112 2je0_A Acidic leucine-rich nuc 99.7 1.2E-16 4.1E-21 116.6 7.4 117 69-188 28-147 (149)
113 1w8a_A SLIT protein; signaling 99.7 8E-16 2.8E-20 117.1 12.3 125 38-171 8-142 (192)
114 2o6r_A Variable lymphocyte rec 99.7 1.6E-15 5.4E-20 113.9 13.5 111 82-195 28-138 (177)
115 3cvr_A Invasion plasmid antige 99.7 7.7E-16 2.6E-20 135.3 13.5 145 68-233 110-255 (571)
116 4b8c_D Glucose-repressible alc 99.7 1.3E-16 4.3E-21 144.5 8.7 113 76-195 218-330 (727)
117 1jl5_A Outer protein YOPM; leu 99.7 1.3E-15 4.4E-20 130.8 14.1 137 82-243 131-267 (454)
118 1jl5_A Outer protein YOPM; leu 99.7 2E-15 6.7E-20 129.7 14.7 111 68-195 141-251 (454)
119 2wfh_A SLIT homolog 2 protein 99.7 1.3E-15 4.5E-20 116.1 12.0 129 53-196 13-141 (193)
120 1z7x_W Ribonuclease inhibitor; 99.6 1.3E-17 4.5E-22 143.2 0.9 157 83-243 86-266 (461)
121 2wfh_A SLIT homolog 2 protein 99.6 2.2E-15 7.6E-20 114.8 12.6 123 38-170 10-141 (193)
122 3g06_A SSPH2 (leucine-rich rep 99.6 3.8E-15 1.3E-19 132.3 15.7 74 155-243 221-294 (622)
123 2o6r_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 111.7 13.2 125 37-170 6-139 (177)
124 1a9n_A U2A', U2A'; complex (nu 99.6 5.4E-16 1.8E-20 116.4 7.8 137 77-221 14-153 (176)
125 1a9n_A U2A', U2A'; complex (nu 99.6 2.6E-15 8.8E-20 112.7 9.2 133 102-243 14-150 (176)
126 1ds9_A Outer arm dynein; leuci 99.6 1.5E-17 5.1E-22 127.4 -5.0 113 102-223 43-155 (198)
127 1dce_A Protein (RAB geranylger 99.6 1.4E-14 4.7E-19 127.6 10.6 158 70-240 397-567 (567)
128 1dce_A Protein (RAB geranylger 99.6 1.9E-14 6.6E-19 126.7 11.4 126 83-215 442-567 (567)
129 1ds9_A Outer arm dynein; leuci 99.6 8.6E-18 2.9E-22 128.7 -8.9 154 51-222 19-186 (198)
130 4ay9_X Follicle-stimulating ho 99.5 1E-14 3.5E-19 121.1 7.9 182 49-242 53-255 (350)
131 3g39_A Variable lymphocyte rec 99.5 1.8E-13 6.2E-18 102.0 10.6 107 53-171 12-118 (170)
132 3g39_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 100.7 11.4 108 84-197 11-118 (170)
133 2r9u_A Variable lymphocyte rec 99.5 5E-13 1.7E-17 100.0 11.4 107 85-197 15-121 (174)
134 2r9u_A Variable lymphocyte rec 99.5 9.8E-13 3.4E-17 98.4 12.9 107 53-171 15-121 (174)
135 3un9_A NLR family member X1; l 99.5 8.5E-16 2.9E-20 128.7 -4.6 174 50-232 72-263 (372)
136 3un9_A NLR family member X1; l 99.4 3.5E-15 1.2E-19 124.9 -2.6 160 81-243 71-249 (372)
137 3sb4_A Hypothetical leucine ri 99.4 8.3E-13 2.8E-17 108.6 7.9 182 49-240 48-328 (329)
138 3ogk_B Coronatine-insensitive 99.4 6.2E-14 2.1E-18 123.8 1.0 82 105-189 162-251 (592)
139 2ifg_A High affinity nerve gro 99.3 8.1E-12 2.8E-16 103.3 11.9 99 69-171 20-119 (347)
140 3sb4_A Hypothetical leucine ri 99.3 8.7E-13 3E-17 108.5 5.0 175 50-242 25-306 (329)
141 3ogk_B Coronatine-insensitive 99.3 4.6E-13 1.6E-17 118.3 3.3 18 176-193 288-305 (592)
142 2p1m_B Transport inhibitor res 99.3 5.4E-13 1.8E-17 117.8 1.6 108 50-165 105-221 (594)
143 2ifg_A High affinity nerve gro 99.3 1.9E-11 6.5E-16 101.1 9.4 105 86-196 12-118 (347)
144 2p1m_B Transport inhibitor res 99.2 2.5E-13 8.5E-18 120.0 -4.6 85 153-243 430-516 (594)
145 2ra8_A Uncharacterized protein 99.0 1.2E-10 4.2E-15 96.8 3.5 138 100-243 165-317 (362)
146 4fdw_A Leucine rich hypothetic 99.0 3.4E-09 1.2E-13 89.4 10.6 163 69-243 167-355 (401)
147 2ra8_A Uncharacterized protein 98.9 8.1E-10 2.8E-14 91.9 4.2 183 50-242 139-339 (362)
148 1io0_A Tropomodulin; LRR prote 98.8 7.3E-10 2.5E-14 83.5 -0.3 92 130-222 64-165 (185)
149 4fdw_A Leucine rich hypothetic 98.8 3.1E-08 1.1E-12 83.5 9.5 154 77-242 221-379 (401)
150 1io0_A Tropomodulin; LRR prote 98.7 3.9E-09 1.3E-13 79.5 3.0 117 125-243 30-161 (185)
151 3rw6_A Nuclear RNA export fact 98.5 3.7E-08 1.3E-12 78.2 2.8 83 104-187 167-257 (267)
152 3rw6_A Nuclear RNA export fact 98.5 2.1E-07 7.3E-12 73.8 6.6 81 153-239 168-257 (267)
153 3e4g_A ATP synthase subunit S, 98.3 6.8E-08 2.3E-12 71.6 0.3 34 132-165 115-149 (176)
154 3e4g_A ATP synthase subunit S, 98.3 1.8E-07 6E-12 69.4 1.3 85 132-221 62-153 (176)
155 1pgv_A TMD-1, tropomodulin TMD 97.9 3.2E-06 1.1E-10 63.7 2.3 119 102-221 36-170 (197)
156 4fs7_A Uncharacterized protein 97.7 0.00016 5.4E-09 60.5 9.3 144 78-237 249-392 (394)
157 1pgv_A TMD-1, tropomodulin TMD 97.6 2E-05 7E-10 59.3 1.5 117 76-192 35-168 (197)
158 4gt6_A Cell surface protein; l 97.6 0.0003 1E-08 58.8 8.8 109 102-219 260-368 (394)
159 4h09_A Hypothetical leucine ri 97.5 0.00062 2.1E-08 56.4 10.4 83 127-216 259-341 (379)
160 4gt6_A Cell surface protein; l 97.5 0.00024 8.1E-09 59.4 7.3 111 123-243 257-367 (394)
161 4fs7_A Uncharacterized protein 97.4 0.00052 1.8E-08 57.3 8.7 84 150-242 292-375 (394)
162 4h09_A Hypothetical leucine ri 97.4 0.001 3.4E-08 55.2 9.8 110 76-191 234-343 (379)
163 3rfe_A Platelet glycoprotein I 96.6 0.006 2E-07 42.6 6.7 38 132-169 32-69 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0063 2.1E-07 42.5 5.8 36 83-119 32-67 (130)
165 2lz0_A Uncharacterized protein 53.8 27 0.00092 22.5 4.9 13 103-115 16-28 (100)
166 2lz0_A Uncharacterized protein 36.9 81 0.0028 20.1 6.3 40 75-116 13-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-34 Score=238.22 Aligned_cols=221 Identities=31% Similarity=0.414 Sum_probs=171.7
Q ss_pred CCCHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCcc--cceEEecCCC--CceEEEecCCCCCCCCCCCCccc--ccc
Q 044082 2 KCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCK--WSGVQCSNRT--GHVIMLNLKYKVDPVCPNRPLRG--NIN 75 (243)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~c~~~~--~~l~~L~l~~~~~~~~~~~~~~~--~~~ 75 (243)
.|.++|++||++||+++++|. .+.+|. .+.+||. |.||.|.... ++|++|++++ +.+.+ .+|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~--------~~l~~~~~~~ 69 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------LNLPKPYPIP 69 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------CCCSSCEECC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC--------CCccCCcccC
Confidence 589999999999999998876 678998 5778998 9999997644 7999999999 47787 788
Q ss_pred hhhccCCCCcEEEccC-CCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCC
Q 044082 76 SSLLELQHLNYLDLSV-NDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHL 154 (243)
Q Consensus 76 ~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 154 (243)
..++++++|++|++++ |.+.+. +|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred hhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 8888888888888884 777776 78888888888888888888887788888888888888888888887777778888
Q ss_pred CCCCEEEcCCccccCC-cchHHHhhccc-cccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhh
Q 044082 155 NKLTQLDLDFVDLSEA-SDWLQVITSLA-SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS 232 (243)
Q Consensus 155 ~~L~~L~l~~n~l~~~-~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~ 232 (243)
++|++|++++|.+.+. |. .+..++ +|++|++++|.+++..+ ..+..+ + |+.|++++|.+++..|..+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N~l~~~~~--~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRNRLTGKIP--PTFANL-N-LAFVDLSRNMLEGDASVLFGSDK 221 (313)
T ss_dssp TTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSSEEEEECC--GGGGGC-C-CSEEECCSSEEEECCGGGCCTTS
T ss_pred CCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCCeeeccCC--hHHhCC-c-ccEEECcCCcccCcCCHHHhcCC
Confidence 8888888888888743 43 666666 77777777777776555 444444 4 66666666666655565566665
Q ss_pred ccCceeeCCCC
Q 044082 233 SNLLALDLNSN 243 (243)
Q Consensus 233 ~~L~~L~l~~N 243 (243)
+ |++|++++|
T Consensus 222 ~-L~~L~L~~N 231 (313)
T 1ogq_A 222 N-TQKIHLAKN 231 (313)
T ss_dssp C-CSEEECCSS
T ss_pred C-CCEEECCCC
Confidence 5 666666554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=9.2e-31 Score=238.56 Aligned_cols=217 Identities=25% Similarity=0.321 Sum_probs=167.2
Q ss_pred CCHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccc---cc----
Q 044082 3 CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGN---IN---- 75 (243)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~---~~---- 75 (243)
+.++|++||++||+++.||. .+++|. .+.+||.|.||.|. .++|+.|||+++ .+.|. ++
T Consensus 9 ~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~--------~l~g~~~~l~~~l~ 74 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSK--------PLNVGFSAVSSSLL 74 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTS--------CCCEEHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCC--------CcCCccCccChhHh
Confidence 35689999999999998888 889998 57899999999997 589999999994 55554 33
Q ss_pred -------------------hhhccCCCCcEEEccCCCCCCCCcch--hhcCCCCCcEEecCCccccccCCcCC-CCCCCC
Q 044082 76 -------------------SSLLELQHLNYLDLSVNDFLGNPIPE--FIGFFTKLRFLDLSLANFSGRIPYQL-GNLTNL 133 (243)
Q Consensus 76 -------------------~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L 133 (243)
..++++++|++|++++|.+.+. +|. .++.+++|++|++++|.+.+..|..+ ..+++|
T Consensus 75 ~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred ccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 4566677777777777777664 565 67777777777777777776666554 667777
Q ss_pred cEEEccCCccccCCccc---cCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCC
Q 044082 134 QSLNLGYNSLYVSKFGW---LSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSL 210 (243)
Q Consensus 134 ~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 210 (243)
++|++++|.+++..+.. +..+++|++|++++|.+.+... +..+++|++|++++|.+.+..+ . +..+ ++|
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~--~-l~~l-~~L 225 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP--F-LGDC-SAL 225 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC--B-CTTC-CSC
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCc--c-cccC-CCC
Confidence 77777777777665554 5667777777777777766532 2677888888888888887666 3 6666 889
Q ss_pred cEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 211 ALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 211 ~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
++|++++|.+++.+|..+..+++ |++|++++|
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~Ls~n 257 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTE-LKLLNISSN 257 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSS-CCEEECCSS
T ss_pred CEEECcCCcCCCcccHHHhcCCC-CCEEECCCC
Confidence 99999999998888888888888 888888876
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.4e-31 Score=219.87 Aligned_cols=230 Identities=20% Similarity=0.218 Sum_probs=158.6
Q ss_pred CCHHHHHHHHHhhhcc-cCCCCCCCCCCCCC-CCCCCcccceEEec--------CCCCceEEEecCCCCC----------
Q 044082 3 CIEKERQALLMFKQGL-VDDCGYLSSWGSDE-GRKDCCKWSGVQCS--------NRTGHVIMLNLKYKVD---------- 62 (243)
Q Consensus 3 ~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~~-~~~~~~~~~~~~c~--------~~~~~l~~L~l~~~~~---------- 62 (243)
++.+|++||++|++++ .++.++...|.... ....+|.|.|+.|. ....+|+.|+|+++.+
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~l 103 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRL 103 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhhhC
Confidence 3556899999999998 68877778894111 56789999999994 2346889999998654
Q ss_pred -----CCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC--------
Q 044082 63 -----PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN-------- 129 (243)
Q Consensus 63 -----~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-------- 129 (243)
+++.+|.+. .+|..++++++|++|++++|.++. +|..+..+++|++|++++|.+.+.+|..+..
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC--CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc--CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 333334444 555556666666666666666652 5666666666666666666555555555443
Q ss_pred -CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082 130 -LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST 208 (243)
Q Consensus 130 -l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 208 (243)
+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+. .+..+++|++|++++|.+.+..+ ..+..+ +
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~~p--~~~~~l-~ 253 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP---AIHHLPKLEELDLRGCTALRNYP--PIFGGR-A 253 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG---GGGGCTTCCEEECTTCTTCCBCC--CCTTCC-C
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch---hhccCCCCCEEECcCCcchhhhH--HHhcCC-C
Confidence 666666666666666 456666777777777777777776654 56677777777777777776666 455555 7
Q ss_pred CCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 209 SLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 209 ~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+|+.|++++|.+.+.+|..+..+++ |++|++++|
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~l~~-L~~L~L~~n 287 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHRLTQ-LEKLDLRGC 287 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGGCTT-CCEEECTTC
T ss_pred CCCEEECCCCCchhhcchhhhcCCC-CCEEeCCCC
Confidence 7788888777777777777777777 888887765
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.8e-30 Score=230.83 Aligned_cols=217 Identities=19% Similarity=0.192 Sum_probs=187.7
Q ss_pred HHHHHHHHHhhhccc-CCCCCCC-------CCCCCCCCCCCccc---ceEEecCCCCceEEEecCCCCCCCCCCCCcccc
Q 044082 5 EKERQALLMFKQGLV-DDCGYLS-------SWGSDEGRKDCCKW---SGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGN 73 (243)
Q Consensus 5 ~~~~~~l~~~~~~~~-~~~~~~~-------~w~~~~~~~~~~~~---~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~ 73 (243)
.+|++||.+++++++ ..+.+.. +|. .+.++|.| .||.|... ++|+.|+|++ +.+.|.
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~--------~~l~g~ 96 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG--------FGASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT--------SCCEEE
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC--------cccCCc
Confidence 369999999999994 4444333 687 57899999 99999754 8999999999 599999
Q ss_pred cchhhccCCCCcEEEccCCCC-----------------------------------------------------------
Q 044082 74 INSSLLELQHLNYLDLSVNDF----------------------------------------------------------- 94 (243)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~n~l----------------------------------------------------------- 94 (243)
+|+.++++++|++|++++|.+
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 999999999999999999854
Q ss_pred -------------------CCCCcchhhcCCCCCcEEecCCcccccc-----------------CCcCCC--CCCCCcEE
Q 044082 95 -------------------LGNPIPEFIGFFTKLRFLDLSLANFSGR-----------------IPYQLG--NLTNLQSL 136 (243)
Q Consensus 95 -------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L 136 (243)
++ +|..++.+++|++|++++|.+++. +|..++ .+++|++|
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccchhhhhhccccCCCcc--CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 12 677899999999999999999975 899998 99999999
Q ss_pred EccCCccccCCccccCCCCCCCEEEcCCcc-ccC-CcchHHHhhcc------ccccccccccccCCCCCCCCc--ccccC
Q 044082 137 NLGYNSLYVSKFGWLSHLNKLTQLDLDFVD-LSE-ASDWLQVITSL------ASLRDLYLASSTLPSINRPSL--SSMNS 206 (243)
Q Consensus 137 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~l------~~L~~L~l~~n~~~~~~~~~~--~~~~~ 206 (243)
++++|.+.+.+|..++.+++|++|++++|. +++ . ++..+..+ ++|++|++++|.++ ..| . .+..+
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~--lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip--~~~~l~~l 329 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ--LKDDWQALADAPVGEKIQIIYIGYNNLK-TFP--VETSLQKM 329 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH--HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC--CHHHHTTC
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCcccc--chHHHHhhhccccCCCCCEEECCCCcCC-ccC--chhhhccC
Confidence 999999999999999999999999999998 876 3 23366665 89999999999998 445 4 56777
Q ss_pred CCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 207 STSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 207 ~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
++|+.|++++|.++|.+| .+..+++ |++|++++|
T Consensus 330 -~~L~~L~L~~N~l~g~ip-~~~~l~~-L~~L~L~~N 363 (636)
T 4eco_A 330 -KKLGMLECLYNQLEGKLP-AFGSEIK-LASLNLAYN 363 (636)
T ss_dssp -TTCCEEECCSCCCEEECC-CCEEEEE-ESEEECCSS
T ss_pred -CCCCEEeCcCCcCccchh-hhCCCCC-CCEEECCCC
Confidence 999999999999998888 8888888 999999886
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.1e-28 Score=223.94 Aligned_cols=216 Identities=22% Similarity=0.228 Sum_probs=178.3
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCC--CCCCC--ccc------------ceEEecCCCCceEEEecCCCCCCCCCCC
Q 044082 5 EKERQALLMFKQGLVDDCGYLSSWGSDE--GRKDC--CKW------------SGVQCSNRTGHVIMLNLKYKVDPVCPNR 68 (243)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~--~~~~~--~~~------------~~~~c~~~~~~l~~L~l~~~~~~~~~~~ 68 (243)
.+|++||++|++++++| +|.... ...++ |.| .||.|.. .++|+.|+|++ +
T Consensus 268 ~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~--------~ 333 (876)
T 4ecn_A 268 IKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG--------F 333 (876)
T ss_dssp HHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT--------T
T ss_pred hHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc--------C
Confidence 47999999999999776 686311 01244 999 9999975 68999999999 5
Q ss_pred CcccccchhhccCCCCcEEEc-cCCCCCCC--------------------------------------------------
Q 044082 69 PLRGNINSSLLELQHLNYLDL-SVNDFLGN-------------------------------------------------- 97 (243)
Q Consensus 69 ~~~~~~~~~~~~l~~L~~L~l-~~n~l~~~-------------------------------------------------- 97 (243)
++.|.+|+.++++++|++|++ ++|.+.+.
T Consensus 334 ~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 999999999999999999999 66643111
Q ss_pred -------------------------CcchhhcCCCCCcEEecCCccccc-----------------cCCcCCC--CCCCC
Q 044082 98 -------------------------PIPEFIGFFTKLRFLDLSLANFSG-----------------RIPYQLG--NLTNL 133 (243)
Q Consensus 98 -------------------------~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L 133 (243)
.+|..++.+++|++|++++|.+++ .+|..++ .+++|
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L 493 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence 067789999999999999999997 3888887 99999
Q ss_pred cEEEccCCccccCCccccCCCCCCCEEEcCCcc-ccC-CcchHHHhhccc-------cccccccccccCCCCCCCCc--c
Q 044082 134 QSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD-LSE-ASDWLQVITSLA-------SLRDLYLASSTLPSINRPSL--S 202 (243)
Q Consensus 134 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~~~--~ 202 (243)
++|++++|.+.+.+|..++.+++|++|++++|. +++ . +|..+..+. +|++|++++|.++ ..| . .
T Consensus 494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~--iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip--~~~~ 568 (876)
T 4ecn_A 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ--LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP--ASAS 568 (876)
T ss_dssp CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH--HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC--CHHH
T ss_pred CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccccc--chHHHHhhhhcccccCCccEEEeeCCcCC-ccC--Chhh
Confidence 999999999999999999999999999999998 876 3 223555555 9999999999998 444 4 5
Q ss_pred cccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 203 SMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 203 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+..+ ++|+.|++++|.++ .+| .++.+++ |++|++++|
T Consensus 569 l~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~-L~~L~Ls~N 605 (876)
T 4ecn_A 569 LQKM-VKLGLLDCVHNKVR-HLE-AFGTNVK-LTDLKLDYN 605 (876)
T ss_dssp HTTC-TTCCEEECTTSCCC-BCC-CCCTTSE-ESEEECCSS
T ss_pred hhcC-CCCCEEECCCCCcc-cch-hhcCCCc-ceEEECcCC
Confidence 6666 89999999999998 777 7888888 999988876
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=7.3e-26 Score=181.99 Aligned_cols=177 Identities=23% Similarity=0.192 Sum_probs=149.7
Q ss_pred eEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCC
Q 044082 52 VIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLT 131 (243)
Q Consensus 52 l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 131 (243)
++.|++++ |.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..++
T Consensus 39 l~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 39 TKKLDLQS--------NKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109 (270)
T ss_dssp CSEEECCS--------SCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred CCEEECcC--------CCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence 45555555 577766666899999999999999999875 455668899999999999999966666788999
Q ss_pred CCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCc
Q 044082 132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLA 211 (243)
Q Consensus 132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 211 (243)
+|++|++++|.++...+..+..+++|++|++++|.+...+. ..+..+++|++|++++|.++.+.+ ..+..+ ++|+
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l-~~L~ 184 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--GVFDKLTSLKELRLYNNQLKRVPE--GAFDKL-TELK 184 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCT--TTTTTC-TTCC
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH--hHccCCcccceeEecCCcCcEeCh--hHhccC-CCcC
Confidence 99999999999998888888999999999999999998854 357889999999999999998876 556666 9999
Q ss_pred EEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 212 LLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 212 ~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
.|++++|.+++..+..+..+++ |+.|++++|
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N 215 (270)
T 2o6q_A 185 TLKLDNNQLKRVPEGAFDSLEK-LKMLQLQEN 215 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTT-CCEEECCSS
T ss_pred EEECCCCcCCcCCHHHhccccC-CCEEEecCC
Confidence 9999999999655556788888 999999987
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=3.1e-24 Score=170.64 Aligned_cols=148 Identities=22% Similarity=0.225 Sum_probs=71.3
Q ss_pred CcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCc
Q 044082 69 PLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKF 148 (243)
Q Consensus 69 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 148 (243)
.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+
T Consensus 46 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 124 (251)
T 3m19_A 46 GLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence 44444444455555555555555555443 34444455555555555555553333344455555555555555544434
Q ss_pred cccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCcccc
Q 044082 149 GWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSN 222 (243)
Q Consensus 149 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 222 (243)
..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+++..+ ..+..+ ++|+.|++++|.++.
T Consensus 125 ~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQLQSVPH--GAFDRL-GKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCT--TTTTTC-TTCCEEECCSCCBCT
T ss_pred hHhccCCcccEEECcCCcCCccCH--HHcCcCcCCCEEECCCCcCCccCH--HHHhCC-CCCCEEEeeCCceeC
Confidence 444445555555555555544422 134444555555555555554443 233333 455555555555543
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=7.2e-25 Score=179.85 Aligned_cols=181 Identities=21% Similarity=0.234 Sum_probs=119.9
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|+++++ |.+.+.+|..++++++|++|++++|.+++. +|..+..+++|++|++++|.+.+..|..+..
T Consensus 76 ~~L~~L~L~~~-------n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 76 PYLNFLYIGGI-------NNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp TTCSEEEEEEE-------TTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred CCCCeeeCCCC-------CcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 57888888842 366666677777777777777777776654 6666667777777777777766666666666
Q ss_pred CCCCcEEEccCCccccCCccccCCCC-CCCEEEcCCccccCC-cc--------------------hHHHhhccccccccc
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLN-KLTQLDLDFVDLSEA-SD--------------------WLQVITSLASLRDLY 187 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~-~~--------------------~~~~~~~l~~L~~L~ 187 (243)
+++|++|++++|.+++..|..+..+. +|++|++++|.+.+. +. .+..+..+++|++|+
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 66667777766666655666566555 566666666655422 21 122455556666666
Q ss_pred cccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 188 l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+++|.+++..+ .+... ++|++|++++|.+++.+|.++..+++ |++|++++|
T Consensus 228 L~~N~l~~~~~---~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N 278 (313)
T 1ogq_A 228 LAKNSLAFDLG---KVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFN 278 (313)
T ss_dssp CCSSEECCBGG---GCCCC-TTCCEEECCSSCCEECCCGGGGGCTT-CCEEECCSS
T ss_pred CCCCceeeecC---ccccc-CCCCEEECcCCcccCcCChHHhcCcC-CCEEECcCC
Confidence 66666655443 24444 77888888888888778888888887 888888776
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.1e-23 Score=170.35 Aligned_cols=169 Identities=25% Similarity=0.185 Sum_probs=126.3
Q ss_pred CCcccccchhhccCCCCcEEEccCCC-CCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC
Q 044082 68 RPLRGNINSSLLELQHLNYLDLSVND-FLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS 146 (243)
Q Consensus 68 ~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 146 (243)
|.+.+..+..+.++++|++|++++|. +... .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++..
T Consensus 66 n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 144 (285)
T 1ozn_A 66 NVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc
Confidence 46666566677777778888887776 5553 466777778888888888877766666677778888888888877766
Q ss_pred CccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccch
Q 044082 147 KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYH 226 (243)
Q Consensus 147 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 226 (243)
.+..+..+++|++|++++|.++..+. ..+..+++|++|++++|.+.+..+ ..+..+ ++|+.|++++|.+++..+.
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l-~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHP--HAFRDL-GRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECT--TTTTTC-TTCCEEECCSSCCSCCCHH
T ss_pred CHhHhccCCCccEEECCCCcccccCH--HHhcCccccCEEECCCCcccccCH--hHccCc-ccccEeeCCCCcCCcCCHH
Confidence 66667777888888888887776643 256777888888888888877666 566666 8888888888888865556
Q ss_pred hHHhhhccCceeeCCCC
Q 044082 227 WLFKISSNLLALDLNSN 243 (243)
Q Consensus 227 ~l~~l~~~L~~L~l~~N 243 (243)
.+..+++ |++|++++|
T Consensus 220 ~~~~l~~-L~~L~l~~N 235 (285)
T 1ozn_A 220 ALAPLRA-LQYLRLNDN 235 (285)
T ss_dssp HHTTCTT-CCEEECCSS
T ss_pred HcccCcc-cCEEeccCC
Confidence 6788888 888888876
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=8.6e-24 Score=192.68 Aligned_cols=169 Identities=30% Similarity=0.360 Sum_probs=126.2
Q ss_pred CCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC
Q 044082 67 NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS 146 (243)
Q Consensus 67 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 146 (243)
+|.+.+.+|..+.++++|++|++++|.+++. +|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+++.
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 3566777777777777777777777777765 677777777777777777777777777777777777777777776654
Q ss_pred Cccc----------------------------------------------------------------------cCCCCC
Q 044082 147 KFGW----------------------------------------------------------------------LSHLNK 156 (243)
Q Consensus 147 ~~~~----------------------------------------------------------------------l~~l~~ 156 (243)
+|.. +..+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 4432 223456
Q ss_pred CCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccC
Q 044082 157 LTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNL 235 (243)
Q Consensus 157 L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L 235 (243)
|++|++++|.+++. |. .++.++.|+.|++++|.+++..| ..+..+ ++|+.|||++|+++|.+|..+..++. |
T Consensus 634 L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L-~~L~~LdLs~N~l~g~ip~~l~~l~~-L 706 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGHNDISGSIP--DEVGDL-RGLNILDLSSNKLDGRIPQAMSALTM-L 706 (768)
T ss_dssp CCEEECCSSCCBSCCCG---GGGGCTTCCEEECCSSCCCSCCC--GGGGGC-TTCCEEECCSSCCEECCCGGGGGCCC-C
T ss_pred ccEEECcCCcccccCCH---HHhccccCCEEeCcCCccCCCCC--hHHhCC-CCCCEEECCCCcccCcCChHHhCCCC-C
Confidence 77777777777765 43 77788888888888888888777 677777 88888888888888888888888888 8
Q ss_pred ceeeCCCC
Q 044082 236 LALDLNSN 243 (243)
Q Consensus 236 ~~L~l~~N 243 (243)
++|++++|
T Consensus 707 ~~L~ls~N 714 (768)
T 3rgz_A 707 TEIDLSNN 714 (768)
T ss_dssp SEEECCSS
T ss_pred CEEECcCC
Confidence 88888876
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=9.1e-24 Score=170.90 Aligned_cols=179 Identities=21% Similarity=0.151 Sum_probs=160.2
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCcc-ccccCCcCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLAN-FSGRIPYQLG 128 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~ 128 (243)
..++.|++++ |.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|. +....+..+.
T Consensus 32 ~~l~~L~l~~--------n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 32 AASQRIFLHG--------NRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp TTCSEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCceEEEeeC--------CcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 5789999999 588877777899999999999999999885 68889999999999999997 7756678899
Q ss_pred CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082 129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST 208 (243)
Q Consensus 129 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 208 (243)
.+++|++|++++|.++...+..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+++..+ ..+..+ +
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l-~ 177 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPE--RAFRGL-H 177 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCEECT--TTTTTC-T
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH--hHhccCCCccEEECCCCcccccCH--HHhcCc-c
Confidence 99999999999999998888889999999999999999998853 367889999999999999988766 456667 9
Q ss_pred CCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 209 SLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 209 ~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+|+.|++++|.+++..|..+..+++ |++|++++|
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n 211 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGR-LMTLYLFAN 211 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSS
T ss_pred ccCEEECCCCcccccCHhHccCccc-ccEeeCCCC
Confidence 9999999999999877899999999 999999987
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=7.6e-24 Score=172.98 Aligned_cols=135 Identities=26% Similarity=0.250 Sum_probs=71.0
Q ss_pred hcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcccc-CCccccCCCCCCCEEEcCCccccCCcchHHHhhccc
Q 044082 103 IGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYV-SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA 181 (243)
Q Consensus 103 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 181 (243)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+ +..+..++
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~ 199 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLS 199 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCT
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCC
Confidence 3344444444444444443334444444555555555554443 23444555555555555555555441 12455555
Q ss_pred cccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhh-ccCceeeCCCC
Q 044082 182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS-SNLLALDLNSN 243 (243)
Q Consensus 182 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~-~~L~~L~l~~N 243 (243)
+|++|++++|.+++..+ ..+..+ ++|+.|++++|.+++..|..+..++ + |++|++++|
T Consensus 200 ~L~~L~L~~N~l~~~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~~-L~~L~L~~N 258 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDT--FPYKCL-NSLQVLDYSLNHIMTSKKQELQHFPSS-LAFLNLTQN 258 (306)
T ss_dssp TCCEEECTTSCCSBCCS--GGGTTC-TTCCEEECTTSCCCBCSSSSCCCCCTT-CCEEECTTC
T ss_pred CCCEEECCCCccCccCh--hhccCc-ccCCEeECCCCCCcccCHHHHHhhhcc-CCEEEccCC
Confidence 66666666666655544 344444 6666666666666665555566554 4 666666665
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.3e-22 Score=164.63 Aligned_cols=175 Identities=23% Similarity=0.214 Sum_probs=155.1
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
..++.|++++ |.+.+..+..+.++++|++|++++|.++. ++.. ..+++|++|++++|.+. .+|..+..
T Consensus 31 ~~l~~L~L~~--------N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~ 98 (290)
T 1p9a_G 31 KDTTILHLSE--------NLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQT 98 (290)
T ss_dssp TTCCEEECTT--------SCCSEEEGGGGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCS-SCCCCTTT
T ss_pred CCCCEEEcCC--------CcCCccCHHHhhcCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCC-cCchhhcc
Confidence 5788999999 58888778899999999999999999987 4443 78999999999999998 78888899
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
+++|++|++++|+++...+..+..+++|++|++++|.+...+. ..+..+++|+.|++++|+++.+++ ..+..+ ++
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l-~~ 173 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTELPA--GLLNGL-EN 173 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSCCSCCCT--TTTTTC-TT
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh--hhcccccCCCEEECCCCcCCccCH--HHhcCc-CC
Confidence 9999999999999998877889999999999999999998853 367889999999999999998776 445566 99
Q ss_pred CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
|+.|++++|+++ .+|..+..... |+.+++++|
T Consensus 174 L~~L~L~~N~l~-~ip~~~~~~~~-L~~l~L~~N 205 (290)
T 1p9a_G 174 LDTLLLQENSLY-TIPKGFFGSHL-LPFAFLHGN 205 (290)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCC-CSEEECCSC
T ss_pred CCEEECCCCcCC-ccChhhccccc-CCeEEeCCC
Confidence 999999999999 78888888888 999999987
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=5.3e-22 Score=159.61 Aligned_cols=157 Identities=26% Similarity=0.235 Sum_probs=83.6
Q ss_pred hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
+..+++|++|++++|.++. + +.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 59 l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD--I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC--C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCcEEECCCCCCCC--c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 4555555555555555544 2 245555555555555555554444445555555555555555555444445555555
Q ss_pred CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237 (243)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~ 237 (243)
++|++++|.+.+.+. ..+..+++|++|++++|.+++..+ ..+..+ ++|+.|++++|.+++..+..+..+++ |++
T Consensus 136 ~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~ 209 (272)
T 3rfs_A 136 TYLNLAHNQLQSLPK--GVFDKLTNLTELDLSYNQLQSLPE--GVFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTS-LQY 209 (272)
T ss_dssp CEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCT--TTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTT-CCE
T ss_pred CEEECCCCccCccCH--HHhccCccCCEEECCCCCcCccCH--HHhcCC-ccCCEEECCCCcCCccCHHHHhCCcC-CCE
Confidence 555555555555432 134555555555555555555444 233344 55555555555555444444555555 555
Q ss_pred eeCCCC
Q 044082 238 LDLNSN 243 (243)
Q Consensus 238 L~l~~N 243 (243)
|++++|
T Consensus 210 L~l~~N 215 (272)
T 3rfs_A 210 IWLHDN 215 (272)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 555554
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=1.7e-22 Score=173.61 Aligned_cols=98 Identities=21% Similarity=0.171 Sum_probs=61.8
Q ss_pred cceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCc
Q 044082 40 WSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLR 110 (243)
Q Consensus 40 ~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 110 (243)
|..+.|.... ..++.|+|++| .+.+..+..+.++++|++|++++|.++.. .+..+..+++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMEN--------NIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCC--------cCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCC
Confidence 5677775432 47899999995 66655566666666666666666666654 445566666666
Q ss_pred EEecCCccccccCCcCCCCCCCCcEEEccCCccccC
Q 044082 111 FLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS 146 (243)
Q Consensus 111 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 146 (243)
+|++++|.+.+..+..+..+++|++|++++|.++..
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 162 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI 162 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCccee
Confidence 666666666644444455566666666666655543
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=171.78 Aligned_cols=96 Identities=23% Similarity=0.197 Sum_probs=48.7
Q ss_pred cceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCc
Q 044082 40 WSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLR 110 (243)
Q Consensus 40 ~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 110 (243)
|..+.|.... ..++.|+|++| .+.+..+..+.++++|++|++++|.++.. .+..+..+++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHEN--------QIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSC--------CCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCC--------cCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCC
Confidence 5677775422 46788999985 44444444445555555555555544443 334444444455
Q ss_pred EEecCCccccccCCcCCCCCCCCcEEEccCCccc
Q 044082 111 FLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLY 144 (243)
Q Consensus 111 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 144 (243)
+|++++|.++...+..+..+++|++|++++|.++
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 5555444444322233444444444444444443
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.1e-22 Score=167.83 Aligned_cols=165 Identities=24% Similarity=0.278 Sum_probs=147.8
Q ss_pred CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcC---------CCCCcEEecCCccccccCCcCCCCCCCCcEEEc
Q 044082 68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGF---------FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNL 138 (243)
Q Consensus 68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 138 (243)
|.+. .+|..++++++|++|++++|.+.+. +|..+.. +++|++|++++|.+. .+|..++.+++|++|++
T Consensus 137 n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 137 NPLR-ALPASIASLNRLRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213 (328)
T ss_dssp CCCC-CCCGGGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred Cccc-cCcHHHhcCcCCCEEECCCCCCccc-cChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence 6777 7899999999999999999988876 8877654 999999999999999 88888999999999999
Q ss_pred cCCccccCCccccCCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCC
Q 044082 139 GYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSS 217 (243)
Q Consensus 139 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~ 217 (243)
++|.+++ +|..+..+++|++|++++|.+.+. |. .+..+++|++|++++|.+.+..+ ..+..+ ++|+.|++++
T Consensus 214 ~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~---~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l-~~L~~L~L~~ 286 (328)
T 4fcg_A 214 RNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP---IFGGRAPLKRLILKDCSNLLTLP--LDIHRL-TQLEKLDLRG 286 (328)
T ss_dssp ESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC---CTTCCCCCCEEECTTCTTCCBCC--TTGGGC-TTCCEEECTT
T ss_pred cCCCCCc-CchhhccCCCCCEEECcCCcchhhhHH---HhcCCCCCCEEECCCCCchhhcc--hhhhcC-CCCCEEeCCC
Confidence 9999986 556799999999999999988776 44 78899999999999999988887 677777 9999999999
Q ss_pred CccccccchhHHhhhccCceeeCCCC
Q 044082 218 CGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 218 n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
|.+.+.+|.+++++++ ++.+++..|
T Consensus 287 n~~~~~iP~~l~~L~~-L~~l~l~~~ 311 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLPA-NCIILVPPH 311 (328)
T ss_dssp CTTCCCCCGGGGGSCT-TCEEECCGG
T ss_pred CCchhhccHHHhhccC-ceEEeCCHH
Confidence 9999999999999999 999988653
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.8e-21 Score=154.64 Aligned_cols=187 Identities=24% Similarity=0.275 Sum_probs=161.4
Q ss_pred CCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecC
Q 044082 36 DCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS 115 (243)
Q Consensus 36 ~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 115 (243)
.|+.|.|..|.. ..+.+++++ +.++ .+|..+. ++++.|++++|.++.. .+..+..+++|++|+++
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~--------~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 67 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQG--------KSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLD 67 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTT--------CCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred cCCCCCceEcCC---CCeEEecCC--------CCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECC
Confidence 577899999953 456789998 3655 4555444 6899999999999986 77789999999999999
Q ss_pred CccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCC
Q 044082 116 LANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195 (243)
Q Consensus 116 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 195 (243)
+|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+++
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS--GVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh--hHhccCCcccEEECcCCcCCc
Confidence 999997777788999999999999999998877888999999999999999998853 357889999999999999998
Q ss_pred CCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 196 INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 196 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+++ ..+..+ ++|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus 146 ~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N 189 (251)
T 3m19_A 146 IPA--GAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGK-LQTITLFGN 189 (251)
T ss_dssp CCT--TTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSC
T ss_pred cCH--HHcCcC-cCCCEEECCCCcCCccCHHHHhCCCC-CCEEEeeCC
Confidence 876 566677 99999999999999766678888998 999999987
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=2.3e-22 Score=164.19 Aligned_cols=177 Identities=24% Similarity=0.237 Sum_probs=103.6
Q ss_pred CceEEEecCCCCCCCCCCCCcc--cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCC-cC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLR--GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP-YQ 126 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~ 126 (243)
.+++.|++++ |.+. +..+..+..+++|++|++++|.++. +|..+..+++|++|++++|.+.+..+ ..
T Consensus 52 ~~L~~L~L~~--------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 121 (306)
T 2z66_A 52 TQLTKLSLSS--------NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121 (306)
T ss_dssp TTCSEEECCS--------SCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESSTTTTT
T ss_pred ccCCEEECCC--------CccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCCCEEECCCCcccccccchh
Confidence 4566666666 3444 2234555556666666666666654 45556666666666666666663333 34
Q ss_pred CCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccC--CcchHHHhhccccccccccccccCCCCCCCCcccc
Q 044082 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSE--ASDWLQVITSLASLRDLYLASSTLPSINRPSLSSM 204 (243)
Q Consensus 127 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 204 (243)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+. .+..+++|++|++++|.+++..+ ..+.
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~~ 196 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLSP--TAFN 196 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECT--TTTT
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh---HHhhCcCCCEEECCCCCcCCcCH--HHhc
Confidence 5566666666666666665555556666666666666666654 232 45556666666666666665544 3444
Q ss_pred cCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 205 NSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 205 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
.+ ++|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus 197 ~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N 233 (306)
T 2z66_A 197 SL-SSLQVLNMSHNNFFSLDTFPYKCLNS-LQVLDYSLN 233 (306)
T ss_dssp TC-TTCCEEECTTSCCSBCCSGGGTTCTT-CCEEECTTS
T ss_pred CC-CCCCEEECCCCccCccChhhccCccc-CCEeECCCC
Confidence 44 66666666666666544445555555 666666654
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=9.9e-22 Score=162.31 Aligned_cols=188 Identities=23% Similarity=0.211 Sum_probs=118.5
Q ss_pred CcccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082 37 CCKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT 107 (243)
Q Consensus 37 ~~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 107 (243)
.|.|+.+.|.... ..++.|++++| .+.+..+..+.++++|++|++++|.++.. .|..+..++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 102 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN--------DISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLR 102 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCT
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCC--------cCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcC
Confidence 4678888886422 47899999994 66665566777777777777777777764 566777777
Q ss_pred CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCcccc-------------------
Q 044082 108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS------------------- 168 (243)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~------------------- 168 (243)
+|++|++++|.+. .+|..+. ++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 103 ~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l 179 (332)
T 2ft3_A 103 KLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179 (332)
T ss_dssp TCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBC
T ss_pred CCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEEC
Confidence 7777777777766 4444332 45555555555555443344444455555554444443
Q ss_pred ---------------------------CCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082 169 ---------------------------EASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS 221 (243)
Q Consensus 169 ---------------------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 221 (243)
+.+ +..+..+++|++|++++|.+.+..+ ..+..+ ++|+.|++++|.++
T Consensus 180 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 180 SEAKLTGIPKDLPETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIEN--GSLSFL-PTLRELHLDNNKLS 254 (332)
T ss_dssp CSSBCSSCCSSSCSSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCT--TGGGGC-TTCCEEECCSSCCC
T ss_pred cCCCCCccCccccCCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCCcCCh--hHhhCC-CCCCEEECCCCcCe
Confidence 221 1244555666666666666666554 345555 77777777777777
Q ss_pred cccchhHHhhhccCceeeCCCC
Q 044082 222 NSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 222 ~~~~~~l~~l~~~L~~L~l~~N 243 (243)
.+|..+..+++ |++|++++|
T Consensus 255 -~lp~~l~~l~~-L~~L~l~~N 274 (332)
T 2ft3_A 255 -RVPAGLPDLKL-LQVVYLHTN 274 (332)
T ss_dssp -BCCTTGGGCTT-CCEEECCSS
T ss_pred -ecChhhhcCcc-CCEEECCCC
Confidence 56766777777 777777765
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1.1e-21 Score=168.44 Aligned_cols=138 Identities=19% Similarity=0.155 Sum_probs=90.2
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.++++|||++| .+.+..|..++++++|++|++++|.+.....+..+..+++|++|++++|.+.+..|..++.
T Consensus 30 ~~l~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLN--------SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG 101 (455)
T ss_dssp TTCCEEECCSS--------CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT
T ss_pred CccCEEEecCC--------ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC
Confidence 57899999994 6666666677777777777777776654312455667777777777777776556666667
Q ss_pred CCCCcEEEccCCccccCCccc--cCCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGW--LSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSIN 197 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~ 197 (243)
+++|++|++++|.+++..+.. +..+++|++|++++|.+.+. +. ..+..+++|++|++++|.+.+..
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA--SFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC--GGGGGCTTCCEEECTTCCBSCCC
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc--cccCCCCcccEEeCCCCcccccC
Confidence 777777777777766533333 66666677777777766665 32 12556666666666666655543
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=168.34 Aligned_cols=194 Identities=23% Similarity=0.189 Sum_probs=157.1
Q ss_pred CCCCCcccceEEecCC-----------CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcch
Q 044082 33 GRKDCCKWSGVQCSNR-----------TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPE 101 (243)
Q Consensus 33 ~~~~~~~~~~~~c~~~-----------~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 101 (243)
.....|.|.++ |.-. ...++.|++++ |.+++..+..+.++++|++|++++|.++.. .+.
T Consensus 25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~ 94 (353)
T 2z80_A 25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSN--------NRITYISNSDLQRCVNLQALVLTSNGINTI-EED 94 (353)
T ss_dssp --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTT
T ss_pred ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCC--------CcCcccCHHHhccCCCCCEEECCCCccCcc-CHh
Confidence 46678888887 5421 24789999999 588876666899999999999999999885 677
Q ss_pred hhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCc-cccCCCCCCCEEEcCCc-cccCCcchHHHhhc
Q 044082 102 FIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKF-GWLSHLNKLTQLDLDFV-DLSEASDWLQVITS 179 (243)
Q Consensus 102 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~ 179 (243)
.+..+++|++|++++|.+++..+..++.+++|++|++++|.++...+ ..+..+++|++|++++| .+...+. ..+..
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~ 172 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDFAG 172 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTT
T ss_pred hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--HHccC
Confidence 89999999999999999995444448899999999999999986544 47889999999999999 4666632 37788
Q ss_pred cccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhH-HhhhccCceeeCCCC
Q 044082 180 LASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWL-FKISSNLLALDLNSN 243 (243)
Q Consensus 180 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l-~~l~~~L~~L~l~~N 243 (243)
+++|++|++++|.+.+..+ ..+..+ ++|++|++++|.++ .+|..+ ..+++ |++|++++|
T Consensus 173 l~~L~~L~l~~n~l~~~~~--~~l~~l-~~L~~L~l~~n~l~-~~~~~~~~~~~~-L~~L~L~~n 232 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEP--KSLKSI-QNVSHLILHMKQHI-LLLEIFVDVTSS-VECLELRDT 232 (353)
T ss_dssp CCEEEEEEEEETTCCEECT--TTTTTC-SEEEEEEEECSCST-THHHHHHHHTTT-EEEEEEESC
T ss_pred CCCCCEEECCCCCcCccCH--HHHhcc-ccCCeecCCCCccc-cchhhhhhhccc-ccEEECCCC
Confidence 9999999999999988776 567777 99999999999997 455544 45677 999999876
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.6e-21 Score=173.05 Aligned_cols=106 Identities=15% Similarity=0.063 Sum_probs=70.9
Q ss_pred CCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcc
Q 044082 64 VCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSL 143 (243)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 143 (243)
++.+|.+.+..+..++.+++|++|++++|.++.. .|..++.+++|++|++++|.+.+..+..++.+++|++|++++|.+
T Consensus 81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 3334566665556677777777777777777665 555667777777777777777743333456777777777777777
Q ss_pred ccCCccccCCCCCCCEEEcCCccccCC
Q 044082 144 YVSKFGWLSHLNKLTQLDLDFVDLSEA 170 (243)
Q Consensus 144 ~~~~~~~l~~l~~L~~L~l~~n~l~~~ 170 (243)
++..|..+..+++|++|++++|.+...
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 766666677777777777777766654
No 24
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=4.1e-22 Score=153.94 Aligned_cols=176 Identities=22% Similarity=0.238 Sum_probs=144.4
Q ss_pred CcccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082 37 CCKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT 107 (243)
Q Consensus 37 ~~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 107 (243)
.|.|.++.|.... .+++.|++++ |.+.+..+..+.++++|++|++++|.++.. .+..+..++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 76 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLET--------NSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLT 76 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCS--------SCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCT
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCC--------CccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCC
Confidence 4689999986432 4688999999 577766666788999999999999999875 556678899
Q ss_pred CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccc
Q 044082 108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187 (243)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 187 (243)
+|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++.+. ..+..+++|++|+
T Consensus 77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIW 154 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEE
T ss_pred CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH--HHhccCCCccEEE
Confidence 99999999999986555667889999999999999987777778889999999999999988853 3578889999999
Q ss_pred cccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhc
Q 044082 188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISS 233 (243)
Q Consensus 188 l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~ 233 (243)
+++|.+.+. + ++|+.|++..|.++|.+|.+++.++.
T Consensus 155 l~~N~~~~~---------~-~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 155 LHDNPWDCT---------C-PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCSCCBCCC---------T-TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ecCCCeecC---------C-CCHHHHHHHHHhCCceeeccCccccC
Confidence 999976542 2 67888899999999999988877654
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=172.40 Aligned_cols=178 Identities=20% Similarity=0.191 Sum_probs=108.3
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
..++.|+|++| .+.+..+..+.++++|++|++++|.++.. .|..+..+++|++|++++|.+.+..+..+..
T Consensus 32 ~~l~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLGKN--------RIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp TTCSEEECCSS--------CCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCcEEECCCC--------ccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 46788888884 66665566667777777777777766664 5666667777777777777666443444566
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
+++|++|++++|.++...+..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+++..+ ..+..+ ++
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l-~~ 177 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLTSIPT--EALSHL-HG 177 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT--TSSTTCTTCCEEEEESCCCSSCCH--HHHTTC-TT
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh--hhccCCCCCCEEECCCCcCcccCh--hHhccc-CC
Confidence 6677777777776666556666666666666666666655521 245556666666666666655443 334444 55
Q ss_pred CcEEECCCCccccccchhHHhhhccCceeeCCC
Q 044082 210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNS 242 (243)
Q Consensus 210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~ 242 (243)
|+.|++++|.+.+..+..+..+++ |++|++++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~ 209 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYR-LKVLEISH 209 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTT-CCEEEEEC
T ss_pred CcEEeCCCCcCcEeChhhcccCcc-cceeeCCC
Confidence 555555555555433334444444 44444443
No 26
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=2e-22 Score=165.16 Aligned_cols=178 Identities=21% Similarity=0.180 Sum_probs=131.4
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhh--ccCCCCcEEEccCCCCCCCCcchhhcCC-----CCCcEEecCCcccccc
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSL--LELQHLNYLDLSVNDFLGNPIPEFIGFF-----TKLRFLDLSLANFSGR 122 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~ 122 (243)
.+++.|++++ |.+++.+|..+ ..+++|++|++++|.+++ .|..+..+ ++|++|++++|.+.+.
T Consensus 95 ~~L~~L~L~~--------n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 95 SGLQELTLEN--------LEVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp SCCCEEEEEE--------EBCBSCCCCCSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred CCccEEEccC--------CcccchhHHHHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence 4677888888 58888888766 888899999999998887 46666666 8899999999988877
Q ss_pred CCcCCCCCCCCcEEEccCCccccC--Ccccc--CCCCCCCEEEcCCccccCCcchH-HHhhccccccccccccccCCCCC
Q 044082 123 IPYQLGNLTNLQSLNLGYNSLYVS--KFGWL--SHLNKLTQLDLDFVDLSEASDWL-QVITSLASLRDLYLASSTLPSIN 197 (243)
Q Consensus 123 ~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~ 197 (243)
.|..++.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+...+.++ ..+..+++|++|++++|.+++..
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 667888889999999999987653 23333 77888999999998888654332 23456788888888888888765
Q ss_pred CCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 198 RPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 198 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+. ..+..+ ++|+.|++++|.|+ .+|..+. ++ |++|++++|
T Consensus 245 ~~-~~~~~l-~~L~~L~Ls~N~l~-~ip~~~~--~~-L~~L~Ls~N 284 (312)
T 1wwl_A 245 GA-PSCDWP-SQLNSLNLSFTGLK-QVPKGLP--AK-LSVLDLSYN 284 (312)
T ss_dssp CC-SCCCCC-TTCCEEECTTSCCS-SCCSSCC--SE-EEEEECCSS
T ss_pred ch-hhhhhc-CCCCEEECCCCccC-hhhhhcc--CC-ceEEECCCC
Confidence 31 223334 77777777777777 5666554 44 777777665
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=3.6e-21 Score=158.72 Aligned_cols=191 Identities=22% Similarity=0.240 Sum_probs=133.6
Q ss_pred CcccceEEecCC---------CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082 37 CCKWSGVQCSNR---------TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT 107 (243)
Q Consensus 37 ~~~~~~~~c~~~---------~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 107 (243)
.|.|+.+.|... ...++.|++++ |.+++..+..++++++|++|++++|.++.. .|..+..++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 100 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQN--------NKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLV 100 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCS--------SCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCC--------CcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCC
Confidence 467888888642 25788999999 578876667889999999999999999885 688899999
Q ss_pred CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccc
Q 044082 108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187 (243)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 187 (243)
+|++|++++|.+. .+|..+. ++|++|++++|.++...+..+..+++|++|++++|.+......+..+..+++|++|+
T Consensus 101 ~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 101 KLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp TCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 9999999999888 5565543 577777777777776655566667777777777776654211122455555555555
Q ss_pred cccccCC---------------------CCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 188 LASSTLP---------------------SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 188 l~~n~~~---------------------~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+++|.++ +..+ ..+..+ ++|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus 178 l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N 250 (330)
T 1xku_A 178 IADTNITTIPQGLPPSLTELHLDGNKITKVDA--ASLKGL-NNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNN 250 (330)
T ss_dssp CCSSCCCSCCSSCCTTCSEEECTTSCCCEECT--GGGTTC-TTCCEEECCSSCCCEECTTTGGGSTT-CCEEECCSS
T ss_pred CCCCccccCCccccccCCEEECCCCcCCccCH--HHhcCC-CCCCEEECCCCcCceeChhhccCCCC-CCEEECCCC
Confidence 5555544 3333 344444 67777777777777555556677776 777777765
No 28
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.1e-21 Score=158.02 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=81.2
Q ss_pred hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC-CccccCCCC
Q 044082 77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS-KFGWLSHLN 155 (243)
Q Consensus 77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~ 155 (243)
.+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.. .|..+..++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~ 149 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred HccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC
Confidence 444444444444444444432 333444444444444444444433333344444455555544444432 244444445
Q ss_pred CCCEEEcCCccccCCcchHHHhhcccccc----ccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhh
Q 044082 156 KLTQLDLDFVDLSEASDWLQVITSLASLR----DLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI 231 (243)
Q Consensus 156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l 231 (243)
+|++|++++|.+.+.+. ..+..+.+|+ .|++++|.+.+..+ ..... .+|+.|++++|.+++..+..+..+
T Consensus 150 ~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~l~l~L~ls~n~l~~~~~---~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQP---GAFKE-IRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp TCCEEECCSSCCCEECG--GGGHHHHTCTTCCEEEECCSSCCCEECT---TSSCS-CCEEEEECCSSCCSCCCTTTTTTC
T ss_pred CCCEEECCCCCCCcCCH--HHhhhhhhccccceeeecCCCcccccCc---cccCC-CcccEEECCCCceeecCHhHhccc
Confidence 55555555554444421 1222233333 44445554444333 22233 478899999999986555556778
Q ss_pred hccCceeeCCCC
Q 044082 232 SSNLLALDLNSN 243 (243)
Q Consensus 232 ~~~L~~L~l~~N 243 (243)
++ |++|++++|
T Consensus 224 ~~-L~~L~l~~N 234 (276)
T 2z62_A 224 TS-LQKIWLHTN 234 (276)
T ss_dssp CS-CCEEECCSS
T ss_pred cc-ccEEEccCC
Confidence 88 999999887
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=7e-22 Score=159.07 Aligned_cols=179 Identities=22% Similarity=0.157 Sum_probs=151.5
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
..++.|++++ |.+++..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..
T Consensus 28 ~~l~~L~ls~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSF--------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTT--------CCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCccEEECCC--------CcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 4689999999 588877777899999999999999999875 5668899999999999999999777788999
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
+++|++|++++|.++...+..+..+++|++|++++|.+.... ++..+..+++|++|++++|.+++..+ ..+..+ .+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l-~~ 174 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVL-HQ 174 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECG--GGGHHH-HT
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec-CchhhccCCCCCEEECCCCCCCcCCH--HHhhhh-hh
Confidence 999999999999999877767999999999999999998742 12378899999999999999988765 455554 55
Q ss_pred Cc----EEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 210 LA----LLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 210 L~----~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
|+ .|++++|.+++ ++.......+ |++|++++|
T Consensus 175 L~~l~l~L~ls~n~l~~-~~~~~~~~~~-L~~L~L~~n 210 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNF-IQPGAFKEIR-LKELALDTN 210 (276)
T ss_dssp CTTCCEEEECCSSCCCE-ECTTSSCSCC-EEEEECCSS
T ss_pred ccccceeeecCCCcccc-cCccccCCCc-ccEEECCCC
Confidence 66 89999999985 4444445556 999999987
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=2.9e-21 Score=162.81 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=67.7
Q ss_pred CCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcccc
Q 044082 66 PNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYV 145 (243)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 145 (243)
.+|.+.+..+..+.++++|++|++++|.++.. .|..+..+++|++|++++|.+....+..+..+++|++|++++|.++.
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 33555555555667777777777777777664 55566677777777777777763322335667777777777777766
Q ss_pred CCccccCCCCCCCEEEcCCccccCC
Q 044082 146 SKFGWLSHLNKLTQLDLDFVDLSEA 170 (243)
Q Consensus 146 ~~~~~l~~l~~L~~L~l~~n~l~~~ 170 (243)
..+..+..+++|++|++++|.+...
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred cChhhccCCCCCCEEECCCCcCCcc
Confidence 6666666677777777777766554
No 31
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2.7e-22 Score=158.25 Aligned_cols=176 Identities=16% Similarity=0.112 Sum_probs=134.1
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCC-CCCCCcchhhcCCCCCcEEecCC-ccccccCCcCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVND-FLGNPIPEFIGFFTKLRFLDLSL-ANFSGRIPYQL 127 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l 127 (243)
..++.|++++ |.+++..+..+.++++|++|++++|. ++.. .+..+..+++|++|++++ |.+.+..+..+
T Consensus 31 ~~l~~L~l~~--------n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIE--------THLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEES--------CCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeC--------CcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4789999999 57776666678889999999999997 7664 445788889999999988 88885555677
Q ss_pred CCCCCCcEEEccCCccccCCccccCCCCCCC---EEEcCCc-cccCCcchHHHhhcccccc-ccccccccCCCCCCCCcc
Q 044082 128 GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLT---QLDLDFV-DLSEASDWLQVITSLASLR-DLYLASSTLPSINRPSLS 202 (243)
Q Consensus 128 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~ 202 (243)
..+++|++|++++|.+++ +|. +..+.+|+ +|++++| .+...+. ..+..+++|+ +|++++|.++.++. .
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l~~L~~~L~l~~n~l~~i~~---~ 174 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFTSVQG---Y 174 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTTBSSEEEEECCSCCCCEECT---T
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc--ccccchhcceeEEEcCCCCCcccCH---h
Confidence 888889999999888876 454 77777777 8888888 7877743 2577788888 88888888875443 3
Q ss_pred cccCCCCCcEEECCCCc-cccccchhHHhh-hccCceeeCCCC
Q 044082 203 SMNSSTSLALLDLSSCG-LSNSAYHWLFKI-SSNLLALDLNSN 243 (243)
Q Consensus 203 ~~~~~~~L~~L~L~~n~-i~~~~~~~l~~l-~~~L~~L~l~~N 243 (243)
.... ++|+.|++++|+ +++..+..+..+ ++ |++|++++|
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~-L~~L~l~~N 215 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG-PSLLDVSQT 215 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBC-CSEEECTTC
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccC-CcEEECCCC
Confidence 3344 678888888884 775445567777 77 888888776
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=5.9e-22 Score=173.89 Aligned_cols=190 Identities=23% Similarity=0.224 Sum_probs=153.1
Q ss_pred CcccceEEecCC-----------CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcC
Q 044082 37 CCKWSGVQCSNR-----------TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGF 105 (243)
Q Consensus 37 ~~~~~~~~c~~~-----------~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 105 (243)
.|.|.++ |+-. ...+++|++++ |.+++..|..++++++|++|++++|.++.. .|..+..
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF--------NKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS--------SCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcC--------CccCccChhhhhcCCcccEEECCCCCcCcc-Chhhccc
Confidence 4677776 6422 24799999999 588887788999999999999999999886 6788999
Q ss_pred CCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC-CccccCCCCCCCEEEcCCcc-ccCCcchHHHhhccccc
Q 044082 106 FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVD-LSEASDWLQVITSLASL 183 (243)
Q Consensus 106 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L 183 (243)
+++|++|++++|.+.+..+..++.+++|++|++++|.+++. .|..++.+++|++|++++|. +...+. ..+..+++|
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~l~~L 150 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGLTSL 150 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTTCCEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH--hhhhccccc
Confidence 99999999999999966666689999999999999999863 46778999999999999998 455542 367889999
Q ss_pred cccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhH-HhhhccCceeeCCCC
Q 044082 184 RDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWL-FKISSNLLALDLNSN 243 (243)
Q Consensus 184 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l-~~l~~~L~~L~l~~N 243 (243)
++|++++|.+++..+ ..+..+ ++|+.|+++.|.+. .+|..+ ..+++ |++|++++|
T Consensus 151 ~~L~L~~n~l~~~~~--~~l~~l-~~L~~L~l~~n~~~-~~~~~~~~~l~~-L~~L~L~~n 206 (549)
T 2z81_A 151 NELEIKALSLRNYQS--QSLKSI-RDIHHLTLHLSESA-FLLEIFADILSS-VRYLELRDT 206 (549)
T ss_dssp EEEEEEETTCCEECT--TTTTTC-SEEEEEEEECSBST-THHHHHHHSTTT-BSEEEEESC
T ss_pred CeeeccCCcccccCh--hhhhcc-ccCceEecccCccc-ccchhhHhhccc-ccEEEccCC
Confidence 999999999988766 566666 77888888887776 455544 34566 777777765
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=3.8e-21 Score=165.02 Aligned_cols=129 Identities=20% Similarity=0.213 Sum_probs=88.1
Q ss_pred CcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccccccc
Q 044082 109 LRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188 (243)
Q Consensus 109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 188 (243)
|++|++++|.+.+..|..++.+++|++|++++|.+++..+..+..+++|++|++++|.+.+.+. ..+..+++|++|++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L 354 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS--RMFENLDKLEVLDL 354 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--GGGTTCTTCCEEEC
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh--hHhcCcccCCEEEC
Confidence 3333333333333345556667777777777777776666677777777777777777766621 36677778888888
Q ss_pred ccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 189 ASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 189 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
++|.+++..+ ..+..+ ++|+.|++++|++++..+..+..+++ |++|++++|
T Consensus 355 s~N~l~~~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N 405 (455)
T 3v47_A 355 SYNHIRALGD--QSFLGL-PNLKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTN 405 (455)
T ss_dssp CSSCCCEECT--TTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSS
T ss_pred CCCcccccCh--hhcccc-ccccEEECCCCccccCCHhHhccCCc-ccEEEccCC
Confidence 8887777666 556666 78888888888887644555677777 888888776
No 34
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=2.8e-20 Score=145.83 Aligned_cols=162 Identities=22% Similarity=0.186 Sum_probs=124.3
Q ss_pred CCCCCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEE
Q 044082 33 GRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFL 112 (243)
Q Consensus 33 ~~~~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 112 (243)
.+...|.|.++.|... .+. .+|..+. ++|++|++++|.++.. .|..+..+++|++|
T Consensus 14 ~~~~~Cs~~~v~c~~~--------------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 69 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSK--------------------RHA-SVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKEL 69 (229)
T ss_dssp CTTCEEETTEEECTTS--------------------CCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCCEEeCCEeEccCC--------------------CcC-ccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEE
Confidence 4778899998888531 222 2333332 7788888888888886 67788888888888
Q ss_pred ecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccccccccccc
Q 044082 113 DLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASST 192 (243)
Q Consensus 113 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 192 (243)
++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR---GIERLTHLTHLALDQNQ 146 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT---TGGGCTTCSEEECCSSC
T ss_pred ECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc---ccccCCCCCEEECCCCc
Confidence 888888874444557788888888888888887766777888888888888888887765 66788888888888888
Q ss_pred CCCCCCCCcccccCCCCCcEEECCCCcccccc
Q 044082 193 LPSINRPSLSSMNSSTSLALLDLSSCGLSNSA 224 (243)
Q Consensus 193 ~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 224 (243)
+++..+ ..+..+ ++|+.|++++|.++...
T Consensus 147 l~~~~~--~~~~~l-~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 147 LKSIPH--GAFDRL-SSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCT--TTTTTC-TTCCEEECTTSCBCTTB
T ss_pred CCccCH--HHHhCC-CCCCEEEeeCCCccCCc
Confidence 887765 455556 88888998888887544
No 35
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=5.4e-21 Score=153.70 Aligned_cols=161 Identities=29% Similarity=0.267 Sum_probs=139.8
Q ss_pred CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 128 (243)
.+.++.|++++ |.+.+ + +.+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..++
T Consensus 62 l~~L~~L~l~~--------n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 130 (272)
T 3rfs_A 62 LPNVRYLALGG--------NKLHD-I-SALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFD 130 (272)
T ss_dssp CTTCCEEECTT--------SCCCC-C-GGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCCcEEECCC--------CCCCC-c-hhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhc
Confidence 46799999999 47765 3 4789999999999999999986 666789999999999999999976667789
Q ss_pred CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082 129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST 208 (243)
Q Consensus 129 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 208 (243)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++.+. ..+..+++|++|++++|.+++..+ ..+..+ +
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~ 205 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQNQLKSVPD--GVFDRL-T 205 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCT--TTTTTC-T
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH--HHhcCCccCCEEECCCCcCCccCH--HHHhCC-c
Confidence 99999999999999998777778999999999999999998853 357889999999999999998877 556667 9
Q ss_pred CCcEEECCCCccccccc
Q 044082 209 SLALLDLSSCGLSNSAY 225 (243)
Q Consensus 209 ~L~~L~L~~n~i~~~~~ 225 (243)
+|+.|++++|.+.+..|
T Consensus 206 ~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 206 SLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TCCEEECCSSCBCCCTT
T ss_pred CCCEEEccCCCccccCc
Confidence 99999999998876554
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.2e-20 Score=151.39 Aligned_cols=190 Identities=26% Similarity=0.252 Sum_probs=160.7
Q ss_pred CCCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEec
Q 044082 35 KDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDL 114 (243)
Q Consensus 35 ~~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 114 (243)
.+.|.|.|+.|.- ...++.+++++ +.++ .+|..+. +++++|++++|.++.. .+..+..+++|++|++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~--------~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 68 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSS--------KKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYL 68 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTT--------SCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEEC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccC--------CCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEEC
Confidence 4789999998853 23567899999 4666 3665443 6799999999999885 5668999999999999
Q ss_pred CCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCC
Q 044082 115 SLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP 194 (243)
Q Consensus 115 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~ 194 (243)
++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+...+. ..+..+++|++|++++|.++
T Consensus 69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP--RVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH--HHhCcCcCCCEEECCCCcCC
Confidence 9999995555567889999999999999998777778999999999999999999853 36789999999999999999
Q ss_pred CCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 195 SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 195 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+.++ ..+..+ ++|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus 147 ~~~~--~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N 191 (270)
T 2o6q_A 147 SLPK--GVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTE-LKTLKLDNN 191 (270)
T ss_dssp CCCT--TTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSS
T ss_pred ccCH--hHccCC-cccceeEecCCcCcEeChhHhccCCC-cCEEECCCC
Confidence 8776 456667 99999999999999766667888998 999999987
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.4e-20 Score=166.97 Aligned_cols=185 Identities=23% Similarity=0.218 Sum_probs=141.6
Q ss_pred CceEEEecCCCCC----------------CCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEe
Q 044082 50 GHVIMLNLKYKVD----------------PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLD 113 (243)
Q Consensus 50 ~~l~~L~l~~~~~----------------~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 113 (243)
.+++.|+|++|.+ +++..|.+.+..|..++++++|++|++++|.++.. .+..+..+++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEE
Confidence 4678888888776 56667888887788889999999999999999974 445578999999999
Q ss_pred cCCccccccCCcCCCCCCCCcEEEccCCccccCCcc--------------------------------------------
Q 044082 114 LSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFG-------------------------------------------- 149 (243)
Q Consensus 114 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-------------------------------------------- 149 (243)
+++|.+.+..|..++.+++|++|++++|.+++..+.
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 999999977777899999999999999987653222
Q ss_pred ---------------ccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEE
Q 044082 150 ---------------WLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLD 214 (243)
Q Consensus 150 ---------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 214 (243)
.+..+++|+.|++++|.+.+.+ +..+..+++|+.|++++|.+++++. ....+ ++|+.|+
T Consensus 234 L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~l-~~L~~L~ 307 (597)
T 3oja_B 234 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVALNL---YGQPI-PTLKVLD 307 (597)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECTTSCCCEEEC---SSSCC-TTCCEEE
T ss_pred CCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECCCCCCCCCCc---ccccC-CCCcEEE
Confidence 2344556666666666666551 1366677777777777777766533 33444 8888888
Q ss_pred CCCCccccccchhHHhhhccCceeeCCCC
Q 044082 215 LSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 215 L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
|++|.++ .+|..+..+++ |++|++++|
T Consensus 308 Ls~N~l~-~i~~~~~~l~~-L~~L~L~~N 334 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQFDR-LENLYLDHN 334 (597)
T ss_dssp CCSSCCC-CCGGGHHHHTT-CSEEECCSS
T ss_pred CCCCCCC-ccCcccccCCC-CCEEECCCC
Confidence 8888888 67888888888 888888876
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=163.39 Aligned_cols=181 Identities=23% Similarity=0.252 Sum_probs=111.3
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|+|++ |.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+....+..+..
T Consensus 88 ~~L~~L~Ls~--------n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 158 (440)
T 3zyj_A 88 RHLEILQLSR--------NHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158 (440)
T ss_dssp SSCCEEECCS--------SCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred CCCCEEECCC--------CcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhh
Confidence 6789999999 477766667788888888888888888764 4556778888888888888777544445666
Q ss_pred CCCCcEEEccCC-ccccCCccccCCCCCCCEEEcCCccccCCcch--------------------HHHhhcccccccccc
Q 044082 130 LTNLQSLNLGYN-SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDW--------------------LQVITSLASLRDLYL 188 (243)
Q Consensus 130 l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--------------------~~~~~~l~~L~~L~l 188 (243)
+++|++|++++| .+....+..+..+++|++|++++|.+...+.+ +..+..+++|++|++
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence 666666666653 33333333455555555555555555544320 124444555555555
Q ss_pred ccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 189 ASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 189 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
++|.++++.+ ..+..+ ++|+.|+|++|++++..+..+..+++ |++|++++|
T Consensus 239 ~~n~l~~~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N 289 (440)
T 3zyj_A 239 IQSQIQVIER--NAFDNL-QSLVEINLAHNNLTLLPHDLFTPLHH-LERIHLHHN 289 (440)
T ss_dssp TTCCCCEECT--TSSTTC-TTCCEEECTTSCCCCCCTTTTSSCTT-CCEEECCSS
T ss_pred CCCceeEECh--hhhcCC-CCCCEEECCCCCCCccChhHhccccC-CCEEEcCCC
Confidence 5555554444 334444 66666666666666444445555665 666666655
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=2.6e-21 Score=171.73 Aligned_cols=159 Identities=23% Similarity=0.214 Sum_probs=73.4
Q ss_pred hccCCCCcEEEccCCCCCCCCcc-hhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcccc-CCccccCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIP-EFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYV-SKFGWLSHLN 155 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~ 155 (243)
+..+++|++|++++|.+... .| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRV-TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CTTCTTCCEEECTTSEEEST-TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccCCCCCCeeECCCCccCCc-cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 33334444444444443332 22 234444444444444444444444444444445555555554443 2344444455
Q ss_pred CCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccC
Q 044082 156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNL 235 (243)
Q Consensus 156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L 235 (243)
+|++|++++|.+.+.+. ..+..+++|++|++++|.+++..+ ..+..+ ++|+.|++++|+++ .+|..+..++++|
T Consensus 474 ~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l-~~L~~L~l~~N~l~-~~p~~~~~l~~~L 547 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISW--GVFDTLHRLQLLNMSHNNLLFLDS--SHYNQL-YSLSTLDCSFNRIE-TSKGILQHFPKSL 547 (606)
T ss_dssp TCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCSCEEG--GGTTTC-TTCCEEECTTSCCC-CEESCGGGSCTTC
T ss_pred CCCEEECCCCcCCccCh--hhhcccccCCEEECCCCcCCCcCH--HHccCC-CcCCEEECCCCcCc-ccCHhHhhhcccC
Confidence 55555555555544411 144445555555555555554433 334444 55555555555555 3444444443225
Q ss_pred ceeeCCCC
Q 044082 236 LALDLNSN 243 (243)
Q Consensus 236 ~~L~l~~N 243 (243)
++|++++|
T Consensus 548 ~~l~l~~N 555 (606)
T 3vq2_A 548 AFFNLTNN 555 (606)
T ss_dssp CEEECCSC
T ss_pred cEEEccCC
Confidence 55555544
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2.9e-20 Score=156.67 Aligned_cols=185 Identities=23% Similarity=0.218 Sum_probs=130.9
Q ss_pred CceEEEecCCCCC----------------CCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEe
Q 044082 50 GHVIMLNLKYKVD----------------PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLD 113 (243)
Q Consensus 50 ~~l~~L~l~~~~~----------------~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 113 (243)
.+++.|+++++.+ +++..|.+.+..|..++++++|++|++++|.++.. .+..+..+++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEE
Confidence 4556666666554 34444677777777889999999999999998873 334468899999999
Q ss_pred cCCccccccCCcCCCCCCCCcEEEccCCccccCCcc--------------------------------------------
Q 044082 114 LSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFG-------------------------------------------- 149 (243)
Q Consensus 114 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-------------------------------------------- 149 (243)
+++|.+.+..+..+..+++|++|++++|.++.....
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 999998876677788888899999888887643221
Q ss_pred ---------------ccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEE
Q 044082 150 ---------------WLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLD 214 (243)
Q Consensus 150 ---------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 214 (243)
.+..+++|++|++++|.+.+.+ +..+..+++|++|++++|.+++... ....+ ++|+.|+
T Consensus 228 L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~l-~~L~~L~ 301 (390)
T 3o6n_A 228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVALNL---YGQPI-PTLKVLD 301 (390)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSCCCEEEC---SSSCC-TTCCEEE
T ss_pred ccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCcCcccCc---ccCCC-CCCCEEE
Confidence 1233455666666666665551 1256667777777777777665432 33344 7888888
Q ss_pred CCCCccccccchhHHhhhccCceeeCCCC
Q 044082 215 LSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 215 L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+++|.++ .+|..+..+++ |++|++++|
T Consensus 302 L~~n~l~-~~~~~~~~l~~-L~~L~L~~N 328 (390)
T 3o6n_A 302 LSHNHLL-HVERNQPQFDR-LENLYLDHN 328 (390)
T ss_dssp CCSSCCC-CCGGGHHHHTT-CSEEECCSS
T ss_pred CCCCcce-ecCccccccCc-CCEEECCCC
Confidence 8888887 57777888888 888888876
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=5.2e-23 Score=168.67 Aligned_cols=211 Identities=18% Similarity=0.160 Sum_probs=155.7
Q ss_pred CCCCCCCCCCCCcccceEEecCCCCceEEEecCCCCC------------CCCCCCCc-ccccchhhc-------cCCCCc
Q 044082 26 SSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVD------------PVCPNRPL-RGNINSSLL-------ELQHLN 85 (243)
Q Consensus 26 ~~w~~~~~~~~~~~~~~~~c~~~~~~l~~L~l~~~~~------------~~~~~~~~-~~~~~~~~~-------~l~~L~ 85 (243)
..|. ....|..+..+.......+++.++++++.+ +++..|.+ .+.+|..+. ++++|+
T Consensus 22 ~~~~---~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~ 98 (312)
T 1wwl_A 22 PDWS---SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98 (312)
T ss_dssp CCGG---GGGGSSSCSEEEEEEEEEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCC
T ss_pred cchH---HHhhhhccccEEEEccCCCceeEeecccccccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCcc
Confidence 4565 344455555543322234455555555443 44444666 345666665 799999
Q ss_pred EEEccCCCCCCCCcchhh--cCCCCCcEEecCCccccccCCcCCCCC-----CCCcEEEccCCccccCCccccCCCCCCC
Q 044082 86 YLDLSVNDFLGNPIPEFI--GFFTKLRFLDLSLANFSGRIPYQLGNL-----TNLQSLNLGYNSLYVSKFGWLSHLNKLT 158 (243)
Q Consensus 86 ~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 158 (243)
+|++++|.+++. .|..+ ..+++|++|++++|.+.+. |..++.+ ++|++|++++|.+++..+..++.+++|+
T Consensus 99 ~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 99 ELTLENLEVTGT-APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp EEEEEEEBCBSC-CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred EEEccCCcccch-hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 999999999976 77776 8999999999999999966 7666665 8999999999999988888899999999
Q ss_pred EEEcCCccccCCcchHHHh--hccccccccccccccCCCCCCCCccc-ccCCCCCcEEECCCCccccccc-hhHHhhhcc
Q 044082 159 QLDLDFVDLSEASDWLQVI--TSLASLRDLYLASSTLPSINRPSLSS-MNSSTSLALLDLSSCGLSNSAY-HWLFKISSN 234 (243)
Q Consensus 159 ~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~~-~~l~~l~~~ 234 (243)
+|++++|.+.+...++..+ ..+++|++|++++|.+++.......+ ..+ ++|+.|++++|.+++..| ..+..+++
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~- 254 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAPSCDWPSQ- 254 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCCCSCCCCCTT-
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccchhhhhhcCC-
Confidence 9999999976642122344 78899999999999998532200122 244 899999999999997664 44555677
Q ss_pred CceeeCCCC
Q 044082 235 LLALDLNSN 243 (243)
Q Consensus 235 L~~L~l~~N 243 (243)
|++|++++|
T Consensus 255 L~~L~Ls~N 263 (312)
T 1wwl_A 255 LNSLNLSFT 263 (312)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 999999987
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=5.1e-21 Score=169.89 Aligned_cols=179 Identities=18% Similarity=0.111 Sum_probs=147.6
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
..+++|++++ |.+.+..+..++++++|++|++++|.++.. .|..|..+++|++|++++|.+.+..|..++.
T Consensus 32 ~~l~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 32 SSTKNIDLSF--------NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCcCEEECCC--------CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 6789999999 588887777899999999999999999885 6788999999999999999999777889999
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
+++|++|++++|.++...+..++.+++|++|++++|.+.+.. ++..+..+++|++|++++|.+++..+ ..+..+ .+
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~ 178 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITV--NDLQFL-RE 178 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECT--TTTHHH-HH
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecCh--hhhhhh-hc
Confidence 999999999999998877778999999999999999998632 12388899999999999999988766 444443 33
Q ss_pred ----CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 210 ----LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 210 ----L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+..+++++|.+++ ++.......+ |++|++++|
T Consensus 179 L~~~l~~L~l~~n~l~~-~~~~~~~~~~-L~~L~L~~n 214 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDF-IQDQAFQGIK-LHELTLRGN 214 (606)
T ss_dssp CTTCCCEEECTTCCCCE-ECTTTTTTCE-EEEEEEESC
T ss_pred cccccceeeccCCCcce-eCcccccCce-eeeeeccCC
Confidence 4578888888884 4444444446 888887765
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=6.8e-21 Score=164.56 Aligned_cols=181 Identities=24% Similarity=0.247 Sum_probs=147.0
Q ss_pred CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 128 (243)
..+++.|+|++ |.+.+..|..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+.
T Consensus 55 l~~L~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 125 (477)
T 2id5_A 55 FPHLEELELNE--------NIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQ 125 (477)
T ss_dssp CTTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCCEEECCC--------CccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHcc
Confidence 46899999999 588888888999999999999999999875 555688999999999999999977888899
Q ss_pred CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccC--
Q 044082 129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNS-- 206 (243)
Q Consensus 129 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-- 206 (243)
.+++|++|++++|.++...+..+..+++|+.|++++|.+...+. ..+..+++|+.|++++|.+.+..+ ..+..+
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~ 201 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNINAIRD--YSFKRLYR 201 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH--HHHTTCTTCCEEEEESCCCCEECT--TCSCSCTT
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh--hHhcccCCCcEEeCCCCcCcEeCh--hhcccCcc
Confidence 99999999999999988888889999999999999999988853 467888888888888888776544 233332
Q ss_pred ---------------------CCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 207 ---------------------STSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 207 ---------------------~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
..+|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n 258 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY-LRFLNLSYN 258 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT-CCEEECCSS
T ss_pred cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc-cCeeECCCC
Confidence 025666666677777433356777888 999988876
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=1.2e-20 Score=167.48 Aligned_cols=169 Identities=24% Similarity=0.205 Sum_probs=112.3
Q ss_pred CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC-
Q 044082 68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS- 146 (243)
Q Consensus 68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~- 146 (243)
|.+.+..|..+.++++|++|++++|.++....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp CSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred CcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence 4555555666666666666666666665541223366666777777777766655666666677777777777766542
Q ss_pred --CccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCcccccc
Q 044082 147 --KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSA 224 (243)
Q Consensus 147 --~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 224 (243)
.+..+..+++|++|++++|.+.+.+. ..+..+++|++|++++|.+++..+ ..+..+ +.| .|++++|.+++..
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~l-~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQ--HAFTSLKMMNHVDLSHNRLTSSSI--EALSHL-KGI-YLNLASNHISIIL 539 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCCGGGG--GGGTTC-CSC-EEECCSSCCCCCC
T ss_pred cccchhhccCCCccEEECCCCccCccCh--hhhccccCCCEEECCCCccCcCCh--hHhCcc-ccc-EEECcCCcccccC
Confidence 22446666777777777777766621 256677777777777777776665 555555 777 7777788777766
Q ss_pred chhHHhhhccCceeeCCCC
Q 044082 225 YHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 225 ~~~l~~l~~~L~~L~l~~N 243 (243)
|..+..+++ |++|++++|
T Consensus 540 ~~~~~~l~~-L~~L~l~~N 557 (606)
T 3t6q_A 540 PSLLPILSQ-QRTINLRQN 557 (606)
T ss_dssp GGGHHHHHT-SSEEECTTC
T ss_pred HhhcccCCC-CCEEeCCCC
Confidence 777777777 888888776
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2.3e-20 Score=154.14 Aligned_cols=180 Identities=17% Similarity=0.206 Sum_probs=127.5
Q ss_pred CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCC--------------------cchhhcCCCC
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNP--------------------IPEFIGFFTK 108 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------~~~~~~~l~~ 108 (243)
..+++.|++++| .+++..|..++++++|++|++++|.++..+ .+..+..+++
T Consensus 77 l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~ 148 (332)
T 2ft3_A 77 LQHLYALVLVNN--------KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRN 148 (332)
T ss_dssp CTTCCEEECCSS--------CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSS
T ss_pred CCCCcEEECCCC--------ccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCcc
Confidence 367888888884 666666667777777777777777665310 2233556666
Q ss_pred CcEEecCCccccc--cCCcCCCCC--------------------CCCcEEEccCCccccCCccccCCCCCCCEEEcCCcc
Q 044082 109 LRFLDLSLANFSG--RIPYQLGNL--------------------TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD 166 (243)
Q Consensus 109 L~~L~l~~~~~~~--~~~~~l~~l--------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 166 (243)
|++|++++|.+.. ..+..+..+ ++|++|++++|.++...+..+..+++|++|++++|.
T Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 7777777666642 223333222 355566666666666556678888999999999999
Q ss_pred ccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhh------hccCceeeC
Q 044082 167 LSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI------SSNLLALDL 240 (243)
Q Consensus 167 l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l------~~~L~~L~l 240 (243)
+.+.+. ..+..+++|++|++++|.++.++. .+..+ ++|+.|++++|.|++..+..+... .. ++.+++
T Consensus 229 l~~~~~--~~~~~l~~L~~L~L~~N~l~~lp~---~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~-l~~L~l 301 (332)
T 2ft3_A 229 IRMIEN--GSLSFLPTLRELHLDNNKLSRVPA---GLPDL-KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY-YNGISL 301 (332)
T ss_dssp CCCCCT--TGGGGCTTCCEEECCSSCCCBCCT---TGGGC-TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC-BSEEEC
T ss_pred CCcCCh--hHhhCCCCCCEEECCCCcCeecCh---hhhcC-ccCCEEECCCCCCCccChhHcccccccccccc-ccceEe
Confidence 998842 368889999999999999986543 56777 999999999999996555555443 44 889999
Q ss_pred CCC
Q 044082 241 NSN 243 (243)
Q Consensus 241 ~~N 243 (243)
++|
T Consensus 302 ~~N 304 (332)
T 2ft3_A 302 FNN 304 (332)
T ss_dssp CSS
T ss_pred ecC
Confidence 886
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=8.8e-21 Score=162.97 Aligned_cols=177 Identities=24% Similarity=0.231 Sum_probs=148.6
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|+|++ |.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+....+..+..
T Consensus 99 ~~L~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 169 (452)
T 3zyi_A 99 HHLEVLQLGR--------NSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169 (452)
T ss_dssp TTCCEEECCS--------SCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTTTTT
T ss_pred CCCCEEECCC--------CccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhHHhc
Confidence 5788889988 588877778889999999999999998875 5666888999999999999998655667888
Q ss_pred CCCCcEEEccCC-ccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082 130 LTNLQSLNLGYN-SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST 208 (243)
Q Consensus 130 l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 208 (243)
+++|++|++++| .+....+..+..+++|++|++++|.+.+.+ .+..+++|++|++++|.+++..+ ..+..+ +
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l-~ 242 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----NLTPLVGLEELEMSGNHFPEIRP--GSFHGL-S 242 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC----CCTTCTTCCEEECTTSCCSEECG--GGGTTC-T
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc----cccccccccEEECcCCcCcccCc--ccccCc-c
Confidence 999999999884 455444556888899999999999998876 36678899999999999988777 667777 9
Q ss_pred CCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 209 SLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 209 ~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N 276 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLAS-LVELNLAHN 276 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTT-CCEEECCSS
T ss_pred CCCEEEeCCCcCceECHHHhcCCCC-CCEEECCCC
Confidence 9999999999999877888888888 999999887
No 47
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=157.16 Aligned_cols=178 Identities=20% Similarity=0.116 Sum_probs=133.3
Q ss_pred ceEEEecCCCCCCCCCCCCcccccchhh--ccCCCCcEEEccCCCCCCCCcc----hhhcCCCCCcEEecCCccccccCC
Q 044082 51 HVIMLNLKYKVDPVCPNRPLRGNINSSL--LELQHLNYLDLSVNDFLGNPIP----EFIGFFTKLRFLDLSLANFSGRIP 124 (243)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~ 124 (243)
+++.|++++ |.+.+..|..+ .++++|++|++++|.++.. .+ ..+..+++|++|++++|.+.+..+
T Consensus 92 ~L~~L~l~~--------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 162 (310)
T 4glp_A 92 RLKELTLED--------LKITGTMPPLPLEATGLALSSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSC 162 (310)
T ss_dssp CCCEEEEES--------CCCBSCCCCCSSSCCCBCCSSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred ceeEEEeeC--------CEeccchhhhhhhccCCCCCEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhH
Confidence 478888888 58888888877 8899999999999998864 33 344578899999999999987777
Q ss_pred cCCCCCCCCcEEEccCCccccC--C--ccccCCCCCCCEEEcCCccccCCcchHHH-hhccccccccccccccCCCCCCC
Q 044082 125 YQLGNLTNLQSLNLGYNSLYVS--K--FGWLSHLNKLTQLDLDFVDLSEASDWLQV-ITSLASLRDLYLASSTLPSINRP 199 (243)
Q Consensus 125 ~~l~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~ 199 (243)
..++.+++|++|++++|++.+. . +..+..+++|++|++++|.++..+..+.. +..+++|++|++++|.+++..|
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p- 241 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN- 241 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch-
Confidence 7888999999999999987542 1 22346788899999999988766433333 4677889999999998888754
Q ss_pred CcccccC--CCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 200 SLSSMNS--STSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 200 ~~~~~~~--~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
..+..+ +++|+.|++++|.|+ .+|..+. ++ |++|++++|
T Consensus 242 -~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~-L~~L~Ls~N 282 (310)
T 4glp_A 242 -PSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AK-LRVLDLSSN 282 (310)
T ss_dssp -SCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SC-CSCEECCSC
T ss_pred -hhHHhccCcCcCCEEECCCCCCC-chhhhhc--CC-CCEEECCCC
Confidence 333333 157888888888887 5666553 44 777777766
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=1.5e-20 Score=169.11 Aligned_cols=177 Identities=25% Similarity=0.266 Sum_probs=141.1
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|++++ |.+.+..+..++++++|++|++++|.++.. .|..+..+++|++|++++|.+.+..+..++.
T Consensus 25 ~~l~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTH--------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCS--------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCC--------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 5789999999 578877777889999999999999998886 7888889999999999999888544456888
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCccc--ccCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSS--MNSS 207 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~~ 207 (243)
+++|++|++++|.+++..+..++.+++|++|++++|.+.+.+. ..+..+++|++|++++|.+++..+ ..+ ...
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~- 170 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQELLLSNNKIQALKS--EELDIFAN- 170 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC--CSSSCCTTCCEEECCSSCCCCBCH--HHHGGGTT-
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc--hhhcccccCCEEEccCCcccccCH--HHhhcccc-
Confidence 9999999999999887777788889999999999998887732 256788899999999998887655 332 234
Q ss_pred CCCcEEECCCCccccccchhHHhhhccCceeeCC
Q 044082 208 TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN 241 (243)
Q Consensus 208 ~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~ 241 (243)
++|+.|++++|.+++..|..+..+++ |+.+++.
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~ 203 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGR-LFGLFLN 203 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSE-ECEEECT
T ss_pred ccccEEECCCCcccccChhhhhhhhh-hhhhhcc
Confidence 78899999999888777766666554 5444443
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.1e-20 Score=155.75 Aligned_cols=175 Identities=18% Similarity=0.163 Sum_probs=124.6
Q ss_pred CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchh----------------------hcCC
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEF----------------------IGFF 106 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------~~~l 106 (243)
..+++.|++++ |.+.+..|..++++++|++|++++|.++. +|.. +..+
T Consensus 75 l~~L~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 144 (330)
T 1xku_A 75 LKNLHTLILIN--------NKISKISPGAFAPLVKLERLYLSKNQLKE--LPEKMPKTLQELRVHENEITKVRKSVFNGL 144 (330)
T ss_dssp CTTCCEEECCS--------SCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCSSCCTTCCEEECCSSCCCBBCHHHHTTC
T ss_pred CCCCCEEECCC--------CcCCeeCHHHhcCCCCCCEEECCCCcCCc--cChhhcccccEEECCCCcccccCHhHhcCC
Confidence 36789999999 47777778888888888888888887764 3433 3444
Q ss_pred CCCcEEecCCccccc--cCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccc
Q 044082 107 TKLRFLDLSLANFSG--RIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLR 184 (243)
Q Consensus 107 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 184 (243)
++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+.+.+ +..+..+++|+
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~ 219 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVD--AASLKGLNNLA 219 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEEC--TGGGTTCTTCC
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccC--HHHhcCCCCCC
Confidence 444445554444431 233344455555555555555543 232222 56667777777776662 24788899999
Q ss_pred ccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 185 DLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 185 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+|++++|.+++..+ ..+..+ ++|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus 220 ~L~Ls~n~l~~~~~--~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~-L~~L~l~~N 273 (330)
T 1xku_A 220 KLGLSFNSISAVDN--GSLANT-PHLRELHLNNNKLV-KVPGGLADHKY-IQVVYLHNN 273 (330)
T ss_dssp EEECCSSCCCEECT--TTGGGS-TTCCEEECCSSCCS-SCCTTTTTCSS-CCEEECCSS
T ss_pred EEECCCCcCceeCh--hhccCC-CCCCEEECCCCcCc-cCChhhccCCC-cCEEECCCC
Confidence 99999999998776 566777 99999999999999 78889999999 999999987
No 50
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.2e-20 Score=167.60 Aligned_cols=170 Identities=26% Similarity=0.272 Sum_probs=116.9
Q ss_pred CCccccc--chhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcC-CCCCCCCcEEEccCCccc
Q 044082 68 RPLRGNI--NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNLQSLNLGYNSLY 144 (243)
Q Consensus 68 ~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~ 144 (243)
|.+.+.. +..+.++++|++|++++|.+... .|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.++
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence 3444433 45566666677777776666654 5666667777777777777776554443 667777777777777777
Q ss_pred cCCccccCCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccc
Q 044082 145 VSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS 223 (243)
Q Consensus 145 ~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 223 (243)
+..+..+..+++|++|++++|.+.+. ...+..+..+++|++|++++|.+++..+ ..+..+ ++|+.|++++|++++.
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ--HAFTSL-KMMNHVDLSHNRLTSS 515 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT--TTTTTC-TTCCEEECCSSCCCGG
T ss_pred CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh--hhhccc-cCCCEEECCCCccCcC
Confidence 66666777777777777777777653 1111256777778888888887777666 556666 7888888888888877
Q ss_pred cchhHHhhhccCceeeCCCC
Q 044082 224 AYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 224 ~~~~l~~l~~~L~~L~l~~N 243 (243)
.|..+..++. | +|++++|
T Consensus 516 ~~~~l~~l~~-L-~L~L~~N 533 (606)
T 3t6q_A 516 SIEALSHLKG-I-YLNLASN 533 (606)
T ss_dssp GGGGGTTCCS-C-EEECCSS
T ss_pred ChhHhCcccc-c-EEECcCC
Confidence 7777777777 7 8887776
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=3.5e-20 Score=150.38 Aligned_cols=174 Identities=25% Similarity=0.241 Sum_probs=147.0
Q ss_pred CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 128 (243)
...++.+++++ +.++ .+|..+. ++++.|++++|.++.. .+..+..+++|++|++++|.+.+. +.. +
T Consensus 9 l~~l~~l~~~~--------~~l~-~ip~~~~--~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~ 74 (290)
T 1p9a_G 9 VASHLEVNCDK--------RNLT-ALPPDLP--KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKL-QVD-G 74 (290)
T ss_dssp STTCCEEECTT--------SCCS-SCCSCCC--TTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEE-ECC-S
T ss_pred cCCccEEECCC--------CCCC-cCCCCCC--CCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcc-cCC-C
Confidence 45788999999 4666 4555443 6899999999999886 678899999999999999999844 333 7
Q ss_pred CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082 129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST 208 (243)
Q Consensus 129 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 208 (243)
.+++|++|++++|.++ .+|..+..+++|++|++++|.++..+. ..+..+++|++|++++|.+++.++ ..+..+ +
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~ 148 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL--GALRGLGELQELYLKGNELKTLPP--GLLTPT-P 148 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS--STTTTCTTCCEEECTTSCCCCCCT--TTTTTC-T
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH--HHHcCCCCCCEEECCCCCCCccCh--hhcccc-c
Confidence 8999999999999998 567778899999999999999998853 378899999999999999998876 455666 9
Q ss_pred CCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 209 SLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 209 ~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+|+.|++++|+++...+..+..+++ |++|++++|
T Consensus 149 ~L~~L~L~~N~l~~l~~~~~~~l~~-L~~L~L~~N 182 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGLLNGLEN-LDTLLLQEN 182 (290)
T ss_dssp TCCEEECTTSCCSCCCTTTTTTCTT-CCEEECCSS
T ss_pred CCCEEECCCCcCCccCHHHhcCcCC-CCEEECCCC
Confidence 9999999999999644556677888 999999987
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=160.84 Aligned_cols=178 Identities=22% Similarity=0.245 Sum_probs=136.5
Q ss_pred CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCc--C
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY--Q 126 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~ 126 (243)
..+++.|++++ |.+++..+..++++++|++|++++|.++.. .+..+..+++|++|++++|.+. .+|. .
T Consensus 75 l~~L~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~ 144 (353)
T 2z80_A 75 CVNLQALVLTS--------NGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-TLGETSL 144 (353)
T ss_dssp CTTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-SSCSSCS
T ss_pred CCCCCEEECCC--------CccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-ccCchhh
Confidence 36789999999 588877777889999999999999999874 4455888999999999999888 4444 6
Q ss_pred CCCCCCCcEEEccCC-ccccCCccccCCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCCCCcccc
Q 044082 127 LGNLTNLQSLNLGYN-SLYVSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINRPSLSSM 204 (243)
Q Consensus 127 l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 204 (243)
+..+++|++|++++| .+....+..+..+++|++|++++|.+.+. +. .+..+++|++|++++|.+...+. ..+.
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~~ 219 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQHILLLE--IFVD 219 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCSTTHHH--HHHH
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCccccchh--hhhh
Confidence 788899999999888 46666667788888888888888888776 33 67777788888888887754432 2222
Q ss_pred cCCCCCcEEECCCCcccc-------------------------------ccchhHHhhhccCceeeCCCC
Q 044082 205 NSSTSLALLDLSSCGLSN-------------------------------SAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 205 ~~~~~L~~L~L~~n~i~~-------------------------------~~~~~l~~l~~~L~~L~l~~N 243 (243)
.. ++|+.|++++|.+++ .+|+++..+++ |++|++++|
T Consensus 220 ~~-~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~-L~~L~Ls~N 287 (353)
T 2z80_A 220 VT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG-LLELEFSRN 287 (353)
T ss_dssp HT-TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT-CCEEECCSS
T ss_pred hc-ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC-CCEEECCCC
Confidence 34 777777777777664 24566777888 999999876
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=9.4e-21 Score=168.39 Aligned_cols=161 Identities=21% Similarity=0.118 Sum_probs=128.2
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
..+++|||++ |.|++..+..|+++++|++|++++|.++.. .+..|..+++|++|++++|.+++..+..|.+
T Consensus 52 ~~~~~LdLs~--------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSF--------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCEEEeeC--------CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 4689999999 588876677899999999999999998875 5667889999999999999998555567888
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccC---
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNS--- 206 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--- 206 (243)
+++|++|++++|.+++..+..++.+++|++|++++|.+...+. +..+..+++|++|++++|++++..+ ..+..+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~l 199 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQM 199 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECCSSCCCEECG--GGGHHHHTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCC-chhhccchhhhhhcccCcccccccc--ccccchhhh
Confidence 9999999999999988777778899999999999999877531 2377888899999999999887765 343322
Q ss_pred CCCCcEEECCCCcccc
Q 044082 207 STSLALLDLSSCGLSN 222 (243)
Q Consensus 207 ~~~L~~L~L~~n~i~~ 222 (243)
-.....++++.|.++.
T Consensus 200 ~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNF 215 (635)
T ss_dssp TTCCCEEECTTCCCCE
T ss_pred hhhhhhhhcccCcccc
Confidence 1234467788887764
No 54
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=2.2e-21 Score=173.33 Aligned_cols=176 Identities=15% Similarity=0.210 Sum_probs=96.1
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCC-CCC-CCcchhhcCC------CCCcEEecCCccccc
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVND-FLG-NPIPEFIGFF------TKLRFLDLSLANFSG 121 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~l------~~L~~L~l~~~~~~~ 121 (243)
.+++.|++++| .+.+.+|..++++++|++|++++|. +++ . +|..++.+ ++|++|++++|.+.
T Consensus 249 ~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~-lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 249 KDLTDVEVYNC--------PNLTKLPTFLKALPEMQLINVACNRGISGEQ-LKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TTCCEEEEECC--------TTCSSCCTTTTTCSSCCEEECTTCTTSCHHH-HHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred CCCCEEEecCC--------cCCccChHHHhcCCCCCEEECcCCCCCcccc-chHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 46777777774 5555555555555555555555554 443 3 44444443 45555555555554
Q ss_pred cCCc--CCCCCCCCcEEEccCCccccCC----------------------ccccCCCCC-CCEEEcCCccccCCcchHHH
Q 044082 122 RIPY--QLGNLTNLQSLNLGYNSLYVSK----------------------FGWLSHLNK-LTQLDLDFVDLSEASDWLQV 176 (243)
Q Consensus 122 ~~~~--~l~~l~~L~~L~l~~n~l~~~~----------------------~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~ 176 (243)
.+|. .++.+++|++|++++|.+++.+ |..+..+++ |++|++++|.+...|. .
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~---~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN---I 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS---C
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch---h
Confidence 4444 4444555555555555444333 444455555 5555555555554433 3
Q ss_pred hhcc--ccccccccccccCCCCCCCCcccc-------cCCCCCcEEECCCCccccccchhHH-hhhccCceeeCCCC
Q 044082 177 ITSL--ASLRDLYLASSTLPSINRPSLSSM-------NSSTSLALLDLSSCGLSNSAYHWLF-KISSNLLALDLNSN 243 (243)
Q Consensus 177 ~~~l--~~L~~L~l~~n~~~~~~~~~~~~~-------~~~~~L~~L~L~~n~i~~~~~~~l~-~l~~~L~~L~l~~N 243 (243)
+..+ ++|++|++++|.+.+..+ ..+. .. ++|+.|++++|.++ .+|..+. .+++ |++|++++|
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~~~~~~~~~-~~L~~L~Ls~N~l~-~lp~~~~~~l~~-L~~L~Ls~N 467 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDG--KNFDPLDPTPFKG-INVSSINLSNNQIS-KFPKELFSTGSP-LSSINLMGN 467 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTT--CSSCTTCSSCCCC-CCEEEEECCSSCCC-SCCTHHHHTTCC-CSEEECCSS
T ss_pred hhhcccCccCEEECcCCcCCCcch--hhhcccccccccC-CCCCEEECcCCccC-cCCHHHHccCCC-CCEEECCCC
Confidence 3322 255666666666555444 3333 33 57777777777777 4555444 3666 888888776
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=164.37 Aligned_cols=177 Identities=23% Similarity=0.234 Sum_probs=146.4
Q ss_pred CceEEEecCCCCCCCCCCCCccccc--chhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCC-cC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNI--NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP-YQ 126 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~ 126 (243)
+.++.|++++ |.+.+.. +..+..+++|++|++++|.+.. ++..+..+++|++|++++|.+.+..+ ..
T Consensus 347 ~~L~~L~l~~--------n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 347 PSLEFLDLSR--------NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp TTCCEEECCS--------SCCBEEEEEEHHHHTCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred CCCCEEeCcC--------CccCccccccccccccCccCEEECCCCcccc--ccccccccCCCCEEEccCCccccccchhh
Confidence 4566666666 4666543 6778889999999999998877 45558899999999999999886655 45
Q ss_pred CCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccC--CcchHHHhhccccccccccccccCCCCCCCCcccc
Q 044082 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSE--ASDWLQVITSLASLRDLYLASSTLPSINRPSLSSM 204 (243)
Q Consensus 127 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 204 (243)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .|. .+..+++|++|++++|.+++..+ ..+.
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~ 491 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLSP--TAFN 491 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECT--TTTT
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh---hhhcccCCCEEECCCCccccCCh--hhhh
Confidence 7889999999999999988888888899999999999999873 344 77888999999999999988766 5667
Q ss_pred cCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 205 NSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 205 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
.+ ++|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus 492 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N 528 (570)
T 2z63_A 492 SL-SSLQVLNMASNQLKSVPDGIFDRLTS-LQKIWLHTN 528 (570)
T ss_dssp TC-TTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSS
T ss_pred cc-cCCCEEeCCCCcCCCCCHHHhhcccC-CcEEEecCC
Confidence 77 99999999999999777777888888 999999887
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=6.9e-21 Score=156.37 Aligned_cols=174 Identities=20% Similarity=0.169 Sum_probs=86.6
Q ss_pred ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCc-----
Q 044082 51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY----- 125 (243)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----- 125 (243)
+++.|++++ |.+.+..|..+.++++|++|++++|.+++. ++ +..+++|++|++++|.+.+..+.
T Consensus 35 ~L~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~ 103 (317)
T 3o53_A 35 NVKELDLSG--------NPLSQISAADLAPFTKLELLNLSSNVLYET--LD-LESLSTLRTLDLNNNYVQELLVGPSIET 103 (317)
T ss_dssp GCSEEECTT--------SCCCCCCHHHHTTCTTCCEEECTTSCCEEE--EE-ETTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred CCCEEECcC--------CccCcCCHHHhhCCCcCCEEECCCCcCCcc--hh-hhhcCCCCEEECcCCccccccCCCCcCE
Confidence 566666666 355555555666666666666666666542 22 55556666666655554421100
Q ss_pred -----------CCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCC
Q 044082 126 -----------QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP 194 (243)
Q Consensus 126 -----------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~ 194 (243)
....+++|++|++++|.++...+..+..+++|++|++++|.+.+.+. ......+++|++|++++|.++
T Consensus 104 L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp EECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCC
T ss_pred EECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCc
Confidence 01123445555566665555444455555666666666666655421 011234455555555555554
Q ss_pred CCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 195 SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 195 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+... ...+ ++|+.|++++|.+++ +|..+..+++ |++|++++|
T Consensus 183 ~~~~----~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~-L~~L~L~~N 224 (317)
T 3o53_A 183 DVKG----QVVF-AKLKTLDLSSNKLAF-MGPEFQSAAG-VTWISLRNN 224 (317)
T ss_dssp EEEC----CCCC-TTCCEEECCSSCCCE-ECGGGGGGTT-CSEEECTTS
T ss_pred cccc----cccc-ccCCEEECCCCcCCc-chhhhcccCc-ccEEECcCC
Confidence 4321 1112 445555555555542 3333444444 444444443
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.1e-20 Score=163.85 Aligned_cols=173 Identities=20% Similarity=0.171 Sum_probs=105.0
Q ss_pred ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCc-----
Q 044082 51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY----- 125 (243)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----- 125 (243)
+++.|+|++ |.+.+..|..++++++|++|++++|.+++. .| +..+++|++|++++|.+.+..+.
T Consensus 35 ~L~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSG--------NPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDLNNNYVQELLVGPSIET 103 (487)
T ss_dssp GCCEEECCS--------SCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE--CTTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred CccEEEeeC--------CcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc--cccCCCCCEEEecCCcCCCCCCCCCcCE
Confidence 677888888 466766666777777777777777777653 33 66677777777766665522110
Q ss_pred -----------CCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHh-hccccccccccccccC
Q 044082 126 -----------QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVI-TSLASLRDLYLASSTL 193 (243)
Q Consensus 126 -----------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~~ 193 (243)
....+++|++|++++|.+++..|..++.+++|++|++++|.+.+.+. ..+ ..+++|+.|++++|.+
T Consensus 104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF--AELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG--GGGGGGTTTCCEEECTTSCC
T ss_pred EECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh--HHHhhhCCcccEEecCCCcc
Confidence 01124566677777777766666666667777777777777766521 133 2556666666666666
Q ss_pred CCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 194 PSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 194 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
++..+ ...+ ++|+.|++++|.+++ +|..+..+++ |+.|++++|
T Consensus 182 ~~~~~----~~~l-~~L~~L~Ls~N~l~~-~~~~~~~l~~-L~~L~Ls~N 224 (487)
T 3oja_A 182 YDVKG----QVVF-AKLKTLDLSSNKLAF-MGPEFQSAAG-VTWISLRNN 224 (487)
T ss_dssp CEEEC----CCCC-TTCCEEECCSSCCCE-ECGGGGGGTT-CSEEECTTS
T ss_pred ccccc----cccC-CCCCEEECCCCCCCC-CCHhHcCCCC-ccEEEecCC
Confidence 65432 2223 566666666666663 3334555555 666666554
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.6e-19 Score=147.61 Aligned_cols=165 Identities=23% Similarity=0.297 Sum_probs=123.4
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|++++ |.+.+..+ +..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+ ++. +..
T Consensus 63 ~~L~~L~L~~--------n~i~~~~~--~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~ 127 (308)
T 1h6u_A 63 NNLIGLELKD--------NQITDLAP--LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITD-VTP-LAG 127 (308)
T ss_dssp TTCCEEECCS--------SCCCCCGG--GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCC-CGG-GTT
T ss_pred CCCCEEEccC--------CcCCCChh--HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCC-chh-hcC
Confidence 5677888887 46664333 7888888888888888776 33 57788888888888888874 333 778
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
+++|++|++++|.+++..+ +..+++|++|++++|.+.+.+ .+..+++|++|++++|.+++.. .+..+ ++
T Consensus 128 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~----~l~~l-~~ 196 (308)
T 1h6u_A 128 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT----PLANLSKLTTLKADDNKISDIS----PLASL-PN 196 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCCG----GGGGC-TT
T ss_pred CCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh----hhcCCCCCCEEECCCCccCcCh----hhcCC-CC
Confidence 8888888888888876543 777888888888888887764 2677888888888888887653 24555 88
Q ss_pred CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
|+.|++++|.+++.. .+..+++ |++|++++|
T Consensus 197 L~~L~L~~N~l~~~~--~l~~l~~-L~~L~l~~N 227 (308)
T 1h6u_A 197 LIEVHLKNNQISDVS--PLANTSN-LFIVTLTNQ 227 (308)
T ss_dssp CCEEECTTSCCCBCG--GGTTCTT-CCEEEEEEE
T ss_pred CCEEEccCCccCccc--cccCCCC-CCEEEccCC
Confidence 888888888888533 2677777 888888765
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=2.3e-19 Score=161.27 Aligned_cols=180 Identities=24% Similarity=0.245 Sum_probs=124.5
Q ss_pred CceEEEecCCCCCCCCCCCCcccccc-hhhccCCCCcEEEccCCCCCCC-------------------------Ccchhh
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNIN-SSLLELQHLNYLDLSVNDFLGN-------------------------PIPEFI 103 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~~ 103 (243)
.+++.|++++| .+.+.+| ..+.++++|++|++++|.+... ..|..+
T Consensus 405 ~~L~~L~L~~N--------~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 405 GHLEVLDLGLN--------EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp TTCCEEECCSS--------CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred CCCCEEeCCCC--------cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 57788888884 4444443 3444555555555555443321 156667
Q ss_pred cCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCc--------cccCCCCCCCEEEcCCccccCCcchHH
Q 044082 104 GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKF--------GWLSHLNKLTQLDLDFVDLSEASDWLQ 175 (243)
Q Consensus 104 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~ 175 (243)
..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+...+. .
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~--~ 554 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV--E 554 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT--T
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH--H
Confidence 777778888888777775555567777788888888887765321 225677788888888888877653 3
Q ss_pred HhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHH-hhhccCceeeCCCC
Q 044082 176 VITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLF-KISSNLLALDLNSN 243 (243)
Q Consensus 176 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~-~l~~~L~~L~l~~N 243 (243)
.+..+++|++|++++|+++++++ ..+..+ ++|+.|++++|++++..+..+. .+++ |+++++++|
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~~-L~~l~l~~N 619 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTLPA--SVFNNQ-VSLKSLNLQKNLITSVEKKVFGPAFRN-LTELDMRFN 619 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT--TTTTTC-TTCCEEECTTSCCCBCCHHHHHHHHTT-CSEEECTTC
T ss_pred HcccccCcceeECCCCCCCcCCH--hHhCCC-CCCCEEECCCCcCCccChhHhcccccc-cCEEEccCC
Confidence 57788888888888888887766 445556 8888999998988876666666 6777 888888876
No 60
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.4e-19 Score=140.94 Aligned_cols=154 Identities=20% Similarity=0.168 Sum_probs=132.4
Q ss_pred EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082 53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132 (243)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 132 (243)
+.++.++ ++++ .+|..+. ++++.|++++|.++.. .+..+..+++|++|++++|.+.+..|..+..+++
T Consensus 14 ~~v~c~~--------~~l~-~iP~~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 14 NIVDCRG--------KGLT-EIPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81 (220)
T ss_dssp TEEECTT--------SCCS-SCCSSCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS
T ss_pred CEEEcCC--------CCcC-cCCCccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC
Confidence 3588888 4655 3555444 6899999999999885 5668899999999999999999888889999999
Q ss_pred CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcE
Q 044082 133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLAL 212 (243)
Q Consensus 133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 212 (243)
|++|++++|.++...+..+..+++|++|++++|.+...+. ..+..+++|++|++++|.++++.+ ..+..+ ++|+.
T Consensus 82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~~L~~ 156 (220)
T 2v9t_B 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV--DAFQDLHNLNLLSLYDNKLQTIAK--GTFSPL-RAIQT 156 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCT--TTTTTC-TTCCE
T ss_pred CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH--HHcCCCCCCCEEECCCCcCCEECH--HHHhCC-CCCCE
Confidence 9999999999997766778899999999999999999832 378899999999999999998877 556666 99999
Q ss_pred EECCCCccccc
Q 044082 213 LDLSSCGLSNS 223 (243)
Q Consensus 213 L~L~~n~i~~~ 223 (243)
|++++|.+.-.
T Consensus 157 L~L~~N~~~c~ 167 (220)
T 2v9t_B 157 MHLAQNPFICD 167 (220)
T ss_dssp EECCSSCEECS
T ss_pred EEeCCCCcCCC
Confidence 99999999753
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=162.04 Aligned_cols=179 Identities=22% Similarity=0.144 Sum_probs=151.7
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
..++.||+++ |.+++..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..++.
T Consensus 28 ~~l~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSF--------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SSCCEEECCS--------CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccEEEccC--------CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 5789999999 588887778899999999999999999885 6778999999999999999999777788999
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
+++|++|++++|.++...+..++.+++|++|++++|.+.... ++..+..+++|++|++++|.+++..+ ..+..+ .+
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l-~~ 174 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVL-HQ 174 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECTTSCCCEECG--GGGHHH-HT
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceec-ChhhhcccCCCCEEeCcCCccceecH--HHccch-hc
Confidence 999999999999998776667899999999999999998742 12378999999999999999988766 556666 77
Q ss_pred C----cEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 210 L----ALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 210 L----~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
| +.+++++|.+++..+..+... + |++|++++|
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~-L~~L~l~~n 210 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-R-LHKLTLRNN 210 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-E-EEEEEEESC
T ss_pred cchhhhhcccCCCCceecCHHHhccC-c-ceeEecccc
Confidence 7 899999999987666655544 5 888887764
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=7.4e-19 Score=143.70 Aligned_cols=165 Identities=20% Similarity=0.271 Sum_probs=140.8
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|+++++ .+.. ++ .+..+++|++|++++|.++. ++. +..+++|++|++++|.+.+ ++ .+..
T Consensus 41 ~~L~~L~l~~~--------~i~~-l~-~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~ 105 (308)
T 1h6u_A 41 DGITTLSAFGT--------GVTT-IE-GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKN-VS-AIAG 105 (308)
T ss_dssp HTCCEEECTTS--------CCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSC-CG-GGTT
T ss_pred CCcCEEEeeCC--------CccC-ch-hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCC-ch-hhcC
Confidence 47899999994 6554 44 68899999999999999988 455 8999999999999999984 44 5889
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
+++|++|++++|.++.. + .+..+++|++|++++|.+.+.+ .+..+++|++|++++|.+++.. .+..+ ++
T Consensus 106 l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~----~l~~l-~~ 174 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQVSDLT----PLANL-SK 174 (308)
T ss_dssp CTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCCG----GGTTC-TT
T ss_pred CCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc----cccCCCCccEEEccCCcCCCCh----hhcCC-CC
Confidence 99999999999999864 3 3889999999999999999885 3778899999999999998753 35666 99
Q ss_pred CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
|+.|++++|.+++ ++. +..+++ |++|++++|
T Consensus 175 L~~L~l~~n~l~~-~~~-l~~l~~-L~~L~L~~N 205 (308)
T 1h6u_A 175 LTTLKADDNKISD-ISP-LASLPN-LIEVHLKNN 205 (308)
T ss_dssp CCEEECCSSCCCC-CGG-GGGCTT-CCEEECTTS
T ss_pred CCEEECCCCccCc-Chh-hcCCCC-CCEEEccCC
Confidence 9999999999985 443 788888 999999987
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=5.4e-20 Score=169.28 Aligned_cols=176 Identities=21% Similarity=0.186 Sum_probs=127.1
Q ss_pred CcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCc-chhhcCCCCCcEEecC
Q 044082 37 CCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPI-PEFIGFFTKLRFLDLS 115 (243)
Q Consensus 37 ~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~ 115 (243)
.+.|..|.+ ....+++|||++ |.+++..+..++++++|++|++++|..... + |..+..+++|++|+++
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~--------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSF--------NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEES--------CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECT
T ss_pred CCCCCCCCC--CCCCcCEEECCC--------CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECC
Confidence 345666655 457899999999 577777777888888888888888865544 4 6778888888888888
Q ss_pred CccccccCCcCCCCCCCCcEEEccCCccccCCccc--cCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccC
Q 044082 116 LANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGW--LSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTL 193 (243)
Q Consensus 116 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~ 193 (243)
+|.+.+..|..++.+++|++|++++|.+++..+.. +..+++|++|++++|.+.+.+. +..+..+++|++|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcC
Confidence 88888777888888888888888888887655543 7788888888888888877631 13677888888888888887
Q ss_pred CCCCCCCcccccCC-CCCcEEECCCCccccccch
Q 044082 194 PSINRPSLSSMNSS-TSLALLDLSSCGLSNSAYH 226 (243)
Q Consensus 194 ~~~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~~ 226 (243)
++..+ ..+..+. ++|+.|+++.|.+++..|.
T Consensus 161 ~~~~~--~~l~~l~~~~L~~L~L~~n~l~~~~~~ 192 (844)
T 3j0a_A 161 FLVCE--HELEPLQGKTLSFFSLAANSLYSRVSV 192 (844)
T ss_dssp CCCCS--GGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred CeeCH--HHcccccCCccceEECCCCcccccccc
Confidence 76655 3332210 4556666666665554443
No 64
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3.7e-19 Score=144.39 Aligned_cols=165 Identities=22% Similarity=0.245 Sum_probs=133.9
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|+++++ .+.. ++ .+..+++|++|++++|.++.. +. +..+++|++|++++|.+.+ ++ .+..
T Consensus 46 ~~L~~L~l~~~--------~i~~-~~-~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~ 110 (291)
T 1h6t_A 46 NSIDQIIANNS--------DIKS-VQ-GIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKD-LS-SLKD 110 (291)
T ss_dssp HTCCEEECTTS--------CCCC-CT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred CcccEEEccCC--------Cccc-Ch-hHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCC-Ch-hhcc
Confidence 46888999984 6553 33 478899999999999999874 44 8899999999999999884 33 3788
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
+++|++|++++|.++.. ..+..+++|++|++++|.+.+.+ .+..+++|++|++++|.+++..+ +..+ ++
T Consensus 111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~N~l~~~~~----l~~l-~~ 179 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIVP----LAGL-TK 179 (291)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG----GTTC-TT
T ss_pred CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcch----hhccCCCCCEEEccCCccccchh----hcCC-Cc
Confidence 99999999999998764 45788899999999999998873 67788999999999999887533 5556 89
Q ss_pred CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
|+.|++++|.+++ ++ .+..+++ |+.|++++|
T Consensus 180 L~~L~L~~N~i~~-l~-~l~~l~~-L~~L~l~~n 210 (291)
T 1h6t_A 180 LQNLYLSKNHISD-LR-ALAGLKN-LDVLELFSQ 210 (291)
T ss_dssp CCEEECCSSCCCB-CG-GGTTCTT-CSEEEEEEE
T ss_pred cCEEECCCCcCCC-Ch-hhccCCC-CCEEECcCC
Confidence 9999999999985 44 3788888 999998865
No 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.8e-19 Score=149.37 Aligned_cols=155 Identities=26% Similarity=0.188 Sum_probs=89.4
Q ss_pred CCcEEEccCCCCCCCCcchhhc-CCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082 83 HLNYLDLSVNDFLGNPIPEFIG-FFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD 161 (243)
Q Consensus 83 ~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 161 (243)
.++.|++++|.++.. .+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|+++...+..+..+++|++|+
T Consensus 40 ~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 356666666666653 344444 566666666666666644445566666666666666666655555566666666666
Q ss_pred cCCccccCCcchHHHhhccccccccccccccCCCCCCCCccc---ccCCCCCcEEECCCCccccccchhHHhhhc-cCce
Q 044082 162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSS---MNSSTSLALLDLSSCGLSNSAYHWLFKISS-NLLA 237 (243)
Q Consensus 162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~-~L~~ 237 (243)
+++|.+...+. ..+..+++|++|++++|.++.++. ..+ ..+ ++|+.|+|++|.|++..+..+..++. .++.
T Consensus 119 L~~N~i~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~ 193 (361)
T 2xot_A 119 LYNNHIVVVDR--NAFEDMAQLQKLYLSQNQISRFPV--ELIKDGNKL-PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193 (361)
T ss_dssp CCSSCCCEECT--TTTTTCTTCCEEECCSSCCCSCCG--GGTC----C-TTCCEEECCSSCCCCCCHHHHHHSCHHHHTT
T ss_pred CCCCcccEECH--HHhCCcccCCEEECCCCcCCeeCH--HHhcCcccC-CcCCEEECCCCCCCccCHHHhhhccHhhcce
Confidence 66666665521 255666666666666666665443 222 233 66666666666666433345555543 0255
Q ss_pred eeCCCC
Q 044082 238 LDLNSN 243 (243)
Q Consensus 238 L~l~~N 243 (243)
|++++|
T Consensus 194 l~l~~N 199 (361)
T 2xot_A 194 LYLHNN 199 (361)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 666554
No 66
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=2.8e-19 Score=136.90 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=93.3
Q ss_pred ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCC
Q 044082 51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNL 130 (243)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 130 (243)
+++.|++++ |.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+.+..+..++.+
T Consensus 45 ~L~~L~l~~--------n~i~-~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 45 SLTYITLAN--------INVT-DLT-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp TCCEEEEES--------SCCS-CCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred CccEEeccC--------CCcc-ChH-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 466677776 3555 344 46666777777777775543 2356667777777777777665566666667
Q ss_pred CCCcEEEccCCccccCCccccCCCCCCCEEEcCCcc-ccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD-LSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 131 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
++|++|++++|.++...+..+..+++|++|++++|. +.+.+ .+..+++|++|++++|.+++.. .+..+ ++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i~~~~----~l~~l-~~ 182 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGVHDYR----GIEDF-PK 182 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCCCCCT----TGGGC-SS
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCCcChH----HhccC-CC
Confidence 777777777777666556666667777777777776 55543 4556667777777777666532 34444 66
Q ss_pred CcEEECCCCccc
Q 044082 210 LALLDLSSCGLS 221 (243)
Q Consensus 210 L~~L~L~~n~i~ 221 (243)
|+.|++++|+|.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 777777777664
No 67
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=3.7e-19 Score=136.25 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=130.5
Q ss_pred hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
.+.+++|++|++++|.++. +| .+..+++|++|++++|.+. . +..+..+++|++|++++|.+++..+..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 4778899999999999986 56 6899999999999999665 3 3468889999999999999998778889999999
Q ss_pred CEEEcCCccccCCcchHHHhhcccccccccccccc-CCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCc
Q 044082 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASST-LPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLL 236 (243)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~ 236 (243)
++|++++|.+.+.. +..+..+++|++|++++|. +... ..+..+ ++|+.|++++|.+++ ++ .+..+++ |+
T Consensus 115 ~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~n~~i~~~----~~l~~l-~~L~~L~l~~n~i~~-~~-~l~~l~~-L~ 184 (197)
T 4ezg_A 115 TLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAITDI----MPLKTL-PELKSLNIQFDGVHD-YR-GIEDFPK-LN 184 (197)
T ss_dssp CEEECCSSBCBGGG--HHHHTTCSSCCEEECCSCTBCCCC----GGGGGC-SSCCEEECTTBCCCC-CT-TGGGCSS-CC
T ss_pred CEEEecCCccCcHh--HHHHhhCCCCCEEEccCCCCcccc----HhhcCC-CCCCEEECCCCCCcC-hH-HhccCCC-CC
Confidence 99999999998752 3478899999999999998 6554 246666 999999999999985 44 6888998 99
Q ss_pred eeeCCCC
Q 044082 237 ALDLNSN 243 (243)
Q Consensus 237 ~L~l~~N 243 (243)
+|++++|
T Consensus 185 ~L~l~~N 191 (197)
T 4ezg_A 185 QLYAFSQ 191 (197)
T ss_dssp EEEECBC
T ss_pred EEEeeCc
Confidence 9999987
No 68
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=9.1e-19 Score=136.41 Aligned_cols=149 Identities=18% Similarity=0.185 Sum_probs=129.7
Q ss_pred cccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCC
Q 044082 38 CKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTK 108 (243)
Q Consensus 38 ~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 108 (243)
|.|..+.|.... ..++.|++++ |.+.+..+..+.++++|++|++++|.++.. .|..+..+++
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~--------n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~ 81 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQ--------NTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRS 81 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCS--------SCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCC--------CcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcC
Confidence 568888886432 4789999999 588877777899999999999999999986 7889999999
Q ss_pred CcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccccccc
Q 044082 109 LRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188 (243)
Q Consensus 109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 188 (243)
|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.++..+. ..+..+++|++|++
T Consensus 82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHL 159 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCEEEe
Confidence 9999999999995555567899999999999999999888899999999999999999999853 36888999999999
Q ss_pred ccccCCCCC
Q 044082 189 ASSTLPSIN 197 (243)
Q Consensus 189 ~~n~~~~~~ 197 (243)
++|.+....
T Consensus 160 ~~N~~~c~c 168 (220)
T 2v9t_B 160 AQNPFICDC 168 (220)
T ss_dssp CSSCEECSG
T ss_pred CCCCcCCCC
Confidence 999987643
No 69
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=4.7e-19 Score=138.02 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=133.4
Q ss_pred EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082 53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132 (243)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 132 (243)
+.+++++ +.++. +|..+. +.+++|++++|.++....+..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~l~~s~--------n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSN--------QKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82 (220)
T ss_dssp TEEECCS--------SCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEeEeCC--------CCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence 3799999 46653 666553 457899999999987412345889999999999999999777778999999
Q ss_pred CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcE
Q 044082 133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLAL 212 (243)
Q Consensus 133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 212 (243)
|++|++++|.+++..+..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+++..+ ..+..+ ++|+.
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~~L~~ 157 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN--DSFIGLSSVRLLSLYDNQITTVAP--GAFDTL-HSLST 157 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT--TSSTTCTTCSEEECTTSCCCCBCT--TTTTTC-TTCCE
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH--hHcCCCccCCEEECCCCcCCEECH--HHhcCC-CCCCE
Confidence 9999999999998888889999999999999999998832 378899999999999999999877 667777 99999
Q ss_pred EECCCCccccccc
Q 044082 213 LDLSSCGLSNSAY 225 (243)
Q Consensus 213 L~L~~n~i~~~~~ 225 (243)
|++++|.++...+
T Consensus 158 L~L~~N~l~c~c~ 170 (220)
T 2v70_A 158 LNLLANPFNCNCY 170 (220)
T ss_dssp EECCSCCEECSGG
T ss_pred EEecCcCCcCCCc
Confidence 9999999986554
No 70
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=3.7e-19 Score=156.76 Aligned_cols=153 Identities=20% Similarity=0.250 Sum_probs=120.3
Q ss_pred ccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccc--cCCcCCCCCCCCcEEEccCCccccCCc-cccCCCC
Q 044082 79 LELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSG--RIPYQLGNLTNLQSLNLGYNSLYVSKF-GWLSHLN 155 (243)
Q Consensus 79 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~ 155 (243)
..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++.+| ..+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 5678888888888888876 78888888889999999888884 234567888889999999888887444 4477788
Q ss_pred CCCEEEcCCccccCCcchHHHhhcc-ccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchh-HHhhhc
Q 044082 156 KLTQLDLDFVDLSEASDWLQVITSL-ASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHW-LFKISS 233 (243)
Q Consensus 156 ~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-l~~l~~ 233 (243)
+|++|++++|.+++. .+..+ ++|+.|++++|.++.++. .+..+ ++|+.|++++|+++ .+|.. +..+++
T Consensus 429 ~L~~L~l~~n~l~~~-----~~~~l~~~L~~L~L~~N~l~~ip~---~~~~l-~~L~~L~L~~N~l~-~l~~~~~~~l~~ 498 (562)
T 3a79_B 429 SILVLNLSSNMLTGS-----VFRCLPPKVKVLDLHNNRIMSIPK---DVTHL-QALQELNVASNQLK-SVPDGVFDRLTS 498 (562)
T ss_dssp TCCEEECCSSCCCGG-----GGSSCCTTCSEEECCSSCCCCCCT---TTTSS-CCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred cCCEEECCCCCCCcc-----hhhhhcCcCCEEECCCCcCcccCh---hhcCC-CCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence 889999998888654 12223 689999999999886554 45566 89999999999998 56665 788888
Q ss_pred cCceeeCCCC
Q 044082 234 NLLALDLNSN 243 (243)
Q Consensus 234 ~L~~L~l~~N 243 (243)
|++|++++|
T Consensus 499 -L~~L~l~~N 507 (562)
T 3a79_B 499 -LQYIWLHDN 507 (562)
T ss_dssp -CCCEECCSC
T ss_pred -CCEEEecCC
Confidence 999999887
No 71
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=6.6e-19 Score=146.01 Aligned_cols=149 Identities=24% Similarity=0.298 Sum_probs=89.7
Q ss_pred hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
+..+++|+++++++|.++.. +. +..+++|++|++++|.+.+. +. +..+++|++|++++|.++.. ..+..+++|
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 267 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDI--TP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKL 267 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred ccCCCccceeecccCCCCCC--ch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence 44555555555555555442 22 55566666666666666532 22 55666666666666666543 335666667
Q ss_pred CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237 (243)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~ 237 (243)
++|++++|.+.+.+ .+..+++|++|++++|.+.+..+ ..+..+ ++|+.|++++|.+++..| +..+++ |++
T Consensus 268 ~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l-~~L~~L~L~~n~l~~~~~--~~~l~~-L~~ 337 (347)
T 4fmz_A 268 KMLNVGSNQISDIS----VLNNLSQLNSLFLNNNQLGNEDM--EVIGGL-TNLTTLFLSQNHITDIRP--LASLSK-MDS 337 (347)
T ss_dssp CEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCGGGH--HHHHTC-TTCSEEECCSSSCCCCGG--GGGCTT-CSE
T ss_pred CEEEccCCccCCCh----hhcCCCCCCEEECcCCcCCCcCh--hHhhcc-ccCCEEEccCCccccccC--hhhhhc-cce
Confidence 77777766666653 35566667777777776665544 444555 677777777777765433 566666 777
Q ss_pred eeCCCC
Q 044082 238 LDLNSN 243 (243)
Q Consensus 238 L~l~~N 243 (243)
|++++|
T Consensus 338 L~l~~N 343 (347)
T 4fmz_A 338 ADFANQ 343 (347)
T ss_dssp ESSSCC
T ss_pred eehhhh
Confidence 777665
No 72
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=9.5e-19 Score=134.97 Aligned_cols=156 Identities=23% Similarity=0.200 Sum_probs=129.7
Q ss_pred EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082 53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132 (243)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 132 (243)
+.++.++ ++++ .+|..+ .++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 10 ~~v~c~~--------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (208)
T 2o6s_A 10 TTVECYS--------QGRT-SVPTGI--PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77 (208)
T ss_dssp TEEECCS--------SCCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEecC--------CCcc-CCCCCC--CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCC
Confidence 4577777 3544 344333 46899999999999975 5666889999999999999999655566789999
Q ss_pred CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcE
Q 044082 133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLAL 212 (243)
Q Consensus 133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 212 (243)
|++|++++|.++...+..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+++..+ ..+..+ ++|+.
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l-~~L~~ 152 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVPD--GVFDRL-TSLQY 152 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCT--TTTTTC-TTCCE
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH--hHhccCCcCCEEECCCCccceeCH--HHhccC-CCccE
Confidence 9999999999997777778999999999999999998853 357889999999999999998776 456666 99999
Q ss_pred EECCCCccccccc
Q 044082 213 LDLSSCGLSNSAY 225 (243)
Q Consensus 213 L~L~~n~i~~~~~ 225 (243)
|++++|.+.+..+
T Consensus 153 L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 153 IWLHDNPWDCTCP 165 (208)
T ss_dssp EECCSCCBCCCTT
T ss_pred EEecCCCeecCCC
Confidence 9999999987654
No 73
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=3.5e-20 Score=169.83 Aligned_cols=176 Identities=19% Similarity=0.188 Sum_probs=118.1
Q ss_pred CCceEEEecCCCCCCCCCCCCccc-----------------ccchhhc--cCCCCcEEEccCCCCCCCCcchhhcCCCCC
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRG-----------------NINSSLL--ELQHLNYLDLSVNDFLGNPIPEFIGFFTKL 109 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 109 (243)
..+++.|+|++ |.+++ .+|..++ ++++|++|++++|.+.+. +|..+..+++|
T Consensus 447 L~~L~~L~Ls~--------N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L 517 (876)
T 4ecn_A 447 LTKLQIIYFAN--------SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPEL 517 (876)
T ss_dssp CTTCCEEEEES--------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSC
T ss_pred CCCCCEEECcC--------CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCC
Confidence 36788999998 47776 3788777 888888888888888776 88888888888
Q ss_pred cEEecCCcc-ccc-cCCcCCC-------CCCCCcEEEccCCccccCCcc--ccCCCCCCCEEEcCCccccCCcchHHHhh
Q 044082 110 RFLDLSLAN-FSG-RIPYQLG-------NLTNLQSLNLGYNSLYVSKFG--WLSHLNKLTQLDLDFVDLSEASDWLQVIT 178 (243)
Q Consensus 110 ~~L~l~~~~-~~~-~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 178 (243)
++|++++|. +++ .+|..++ .+++|++|++++|.++ .+|. .++.+++|+.|++++|.+..+| .+.
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----~~~ 592 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE----AFG 592 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC----CCC
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch----hhc
Confidence 888888887 766 5554333 3447777777777777 5566 6777777777777777776444 456
Q ss_pred ccccccccccccccCCCCCCCCcccccCCCC-CcEEECCCCccccccchhHHhhhc-cCceeeCCCC
Q 044082 179 SLASLRDLYLASSTLPSINRPSLSSMNSSTS-LALLDLSSCGLSNSAYHWLFKISS-NLLALDLNSN 243 (243)
Q Consensus 179 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-L~~L~L~~n~i~~~~~~~l~~l~~-~L~~L~l~~N 243 (243)
.+++|+.|++++|.+..+ + ..+..+ ++ |+.|++++|.++ .+|..+..... +|+.|++++|
T Consensus 593 ~L~~L~~L~Ls~N~l~~l-p--~~l~~l-~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEI-P--EDFCAF-TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp TTSEESEEECCSSCCSCC-C--TTSCEE-CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred CCCcceEEECcCCccccc-h--HHHhhc-cccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence 666677777777766633 3 244444 55 666666666665 45554433321 1444554443
No 74
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=1.8e-18 Score=143.42 Aligned_cols=149 Identities=25% Similarity=0.339 Sum_probs=117.6
Q ss_pred hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
+..+++|++|++++|.+.. ++. +..+++|+++++++|.+.+..+ +..+++|++|++++|.++...+ +..+++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L 245 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIED--ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL 245 (347)
T ss_dssp GGGCTTCSEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hccCCCCCEEEccCCcccc--ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence 5666677777777776665 333 6667777777777776664333 6678889999999998876544 7888899
Q ss_pred CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237 (243)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~ 237 (243)
++|++++|.+.+.+ .+..+++|++|++++|.+++. ..+..+ ++|+.|++++|.+++..+..+..+++ |++
T Consensus 246 ~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~----~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~ 315 (347)
T 4fmz_A 246 TWLEIGTNQISDIN----AVKDLTKLKMLNVGSNQISDI----SVLNNL-SQLNSLFLNNNQLGNEDMEVIGGLTN-LTT 315 (347)
T ss_dssp CEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCC----GGGGGC-TTCSEEECCSSCCCGGGHHHHHTCTT-CSE
T ss_pred CEEECCCCccCCCh----hHhcCCCcCEEEccCCccCCC----hhhcCC-CCCCEEECcCCcCCCcChhHhhcccc-CCE
Confidence 99999999888763 577889999999999998875 345666 99999999999999888889999999 999
Q ss_pred eeCCCC
Q 044082 238 LDLNSN 243 (243)
Q Consensus 238 L~l~~N 243 (243)
|++++|
T Consensus 316 L~L~~n 321 (347)
T 4fmz_A 316 LFLSQN 321 (347)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 999987
No 75
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=136.08 Aligned_cols=149 Identities=17% Similarity=0.132 Sum_probs=128.1
Q ss_pred cccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccc-hhhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082 38 CKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNIN-SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT 107 (243)
Q Consensus 38 ~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 107 (243)
|.|..+.|.... ..++.|++++ |.+++..+ ..+.++++|++|++++|.++.. .+..+..++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~--------N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~ 81 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNN--------NEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGAS 81 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCS--------SCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCC--------CcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCC
Confidence 567777775422 3578899999 58887654 4589999999999999999885 566899999
Q ss_pred CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCC-cchHHHhhcccccccc
Q 044082 108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDL 186 (243)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L 186 (243)
+|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++.. +. .+..+++|+.|
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L 158 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTL 158 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTTCCEE
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH---HhcCCCCCCEE
Confidence 999999999999977777789999999999999999988888999999999999999999998 44 78899999999
Q ss_pred ccccccCCCCCC
Q 044082 187 YLASSTLPSINR 198 (243)
Q Consensus 187 ~l~~n~~~~~~~ 198 (243)
++++|.+.+...
T Consensus 159 ~L~~N~l~c~c~ 170 (220)
T 2v70_A 159 NLLANPFNCNCY 170 (220)
T ss_dssp ECCSCCEECSGG
T ss_pred EecCcCCcCCCc
Confidence 999999886543
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.7e-19 Score=142.11 Aligned_cols=175 Identities=15% Similarity=0.155 Sum_probs=142.9
Q ss_pred CCceEEEecCCCCCCCCCCCC-cccccchhhccCCCCcEEEccC-CCCCCCCcchhhcCCCCCcEEecCCccccccCCcC
Q 044082 49 TGHVIMLNLKYKVDPVCPNRP-LRGNINSSLLELQHLNYLDLSV-NDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 126 (243)
..+++.|++++ |. ++...+..+.++++|++|++++ |.++.. .+..+..+++|++|++++|.+.+ +|.
T Consensus 54 l~~L~~L~l~~--------n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~-lp~- 122 (239)
T 2xwt_C 54 LPNISRIYVSI--------DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGLKM-FPD- 122 (239)
T ss_dssp CTTCCEEEEEC--------CSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECCCS-CCC-
T ss_pred CCCCcEEeCCC--------CCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCCcc-ccc-
Confidence 36899999999 45 6665566889999999999998 999875 55778999999999999999994 666
Q ss_pred CCCCCCCc---EEEccCC-ccccCCccccCCCCCCC-EEEcCCccccCCcchHHHhhcccccccccccccc-CCCCCCCC
Q 044082 127 LGNLTNLQ---SLNLGYN-SLYVSKFGWLSHLNKLT-QLDLDFVDLSEASDWLQVITSLASLRDLYLASST-LPSINRPS 200 (243)
Q Consensus 127 l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~ 200 (243)
+..+++|+ +|++++| .++...+..+..+++|+ .|++++|.+...+. ..+.. ++|++|++++|+ ++.+.+
T Consensus 123 ~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~--~~~~~-~~L~~L~L~~n~~l~~i~~-- 197 (239)
T 2xwt_C 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG--YAFNG-TKLDAVYLNKNKYLTVIDK-- 197 (239)
T ss_dssp CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT--TTTTT-CEEEEEECTTCTTCCEECT--
T ss_pred cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH--hhcCC-CCCCEEEcCCCCCcccCCH--
Confidence 77888888 9999999 89877777799999999 99999999997754 23444 799999999995 887655
Q ss_pred cccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 201 LSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 201 ~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
..+..+.++|+.|++++|.++ .+|.. .+++ |++|+++++
T Consensus 198 ~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~-L~~L~l~~~ 236 (239)
T 2xwt_C 198 DAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEH-LKELIARNT 236 (239)
T ss_dssp TTTTTCSBCCSEEECTTCCCC-CCCCT--TCTT-CSEEECTTC
T ss_pred HHhhccccCCcEEECCCCccc-cCChh--Hhcc-CceeeccCc
Confidence 333332278999999999998 46654 5667 999998865
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=7.8e-20 Score=150.06 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=61.9
Q ss_pred CCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCcccc-CCCCCCCEEEcCCccccCCcchHHHhhcccccc
Q 044082 106 FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWL-SHLNKLTQLDLDFVDLSEASDWLQVITSLASLR 184 (243)
Q Consensus 106 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 184 (243)
+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+ ..+++|++|++++|.++..+. ...+++|+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~l~~L~ 194 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLK 194 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTCC
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc----ccccccCC
Confidence 4455555555555554444444455555555555555554433333 234555555555555544421 11244555
Q ss_pred ccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 185 DLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 185 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+|++++|.+++.++ .+..+ ++|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus 195 ~L~Ls~N~l~~l~~---~~~~l-~~L~~L~L~~N~l~-~l~~~~~~l~~-L~~L~l~~N 247 (317)
T 3o53_A 195 TLDLSSNKLAFMGP---EFQSA-AGVTWISLRNNKLV-LIEKALRFSQN-LEHFDLRGN 247 (317)
T ss_dssp EEECCSSCCCEECG---GGGGG-TTCSEEECTTSCCC-EECTTCCCCTT-CCEEECTTC
T ss_pred EEECCCCcCCcchh---hhccc-CcccEEECcCCccc-chhhHhhcCCC-CCEEEccCC
Confidence 55555555544332 23333 55555555555554 34444444444 555555544
No 78
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=3.5e-19 Score=148.73 Aligned_cols=171 Identities=23% Similarity=0.187 Sum_probs=142.1
Q ss_pred cccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhc-cCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082 38 CKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLL-ELQHLNYLDLSVNDFLGNPIPEFIGFFT 107 (243)
Q Consensus 38 ~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 107 (243)
|.+..+.|.... ..++.|+|++ |.+++..+..+. ++++|++|++++|.++.. .+..+..++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~--------N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~ 88 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSH--------NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVP 88 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCS--------SCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCC--------CCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCC
Confidence 456677775422 4578899999 588877777777 999999999999999985 567899999
Q ss_pred CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHh---hcccccc
Q 044082 108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVI---TSLASLR 184 (243)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---~~l~~L~ 184 (243)
+|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+...+. ..+ ..+++|+
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l~~L~ 166 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV--ELIKDGNKLPKLM 166 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG--GGTC----CTTCC
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH--HHhcCcccCCcCC
Confidence 99999999999996666678999999999999999998888889999999999999999999864 233 6789999
Q ss_pred ccccccccCCCCCCCCcccccCCCC--CcEEECCCCcccc
Q 044082 185 DLYLASSTLPSINRPSLSSMNSSTS--LALLDLSSCGLSN 222 (243)
Q Consensus 185 ~L~l~~n~~~~~~~~~~~~~~~~~~--L~~L~L~~n~i~~ 222 (243)
+|++++|.++.++. ..+..+ +. ++.|++++|.+.-
T Consensus 167 ~L~L~~N~l~~l~~--~~~~~l-~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 167 LLDLSSNKLKKLPL--TDLQKL-PAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp EEECCSSCCCCCCH--HHHHHS-CHHHHTTEECCSSCEEC
T ss_pred EEECCCCCCCccCH--HHhhhc-cHhhcceEEecCCCccC
Confidence 99999999998765 455555 65 4889999999864
No 79
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.6e-18 Score=135.78 Aligned_cols=149 Identities=26% Similarity=0.276 Sum_probs=129.3
Q ss_pred CcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcC
Q 044082 84 LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163 (243)
Q Consensus 84 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 163 (243)
.+.++.+++.++. +|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHAS--VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCc--cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4578999998877 666553 889999999999998878889999999999999999987766778999999999999
Q ss_pred CccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 164 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+|.++..+. ..+..+++|++|++++|.++.++. .+..+ ++|+.|++++|+|++..+..+..+++ |++|++++|
T Consensus 97 ~N~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N 169 (229)
T 3e6j_A 97 TNQLTVLPS--AVFDRLVHLKELFMCCNKLTELPR---GIERL-THLTHLALDQNQLKSIPHGAFDRLSS-LTHAYLFGN 169 (229)
T ss_dssp SSCCCCCCT--TTTTTCTTCCEEECCSSCCCSCCT---TGGGC-TTCSEEECCSSCCCCCCTTTTTTCTT-CCEEECTTS
T ss_pred CCcCCccCh--hHhCcchhhCeEeccCCcccccCc---ccccC-CCCCEEECCCCcCCccCHHHHhCCCC-CCEEEeeCC
Confidence 999998853 367889999999999999996543 56677 99999999999999655567888988 999999987
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=5.4e-21 Score=157.84 Aligned_cols=164 Identities=23% Similarity=0.207 Sum_probs=84.7
Q ss_pred cchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCc-ccccc-CCcCCCCCCCCcEEEccCC-ccccC-Ccc
Q 044082 74 INSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLA-NFSGR-IPYQLGNLTNLQSLNLGYN-SLYVS-KFG 149 (243)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~ 149 (243)
++..+..+++|++|++++|.++.. .+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .++.. .+.
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 444455555555555555555443 4555555555555555555 34421 3333445555555565555 55432 233
Q ss_pred ccCCCC-CCCEEEcCCcc--ccCCcchHHHhhcccccccccccccc-CCCCCCCCcccccCCCCCcEEECCCC-cccccc
Q 044082 150 WLSHLN-KLTQLDLDFVD--LSEASDWLQVITSLASLRDLYLASST-LPSINRPSLSSMNSSTSLALLDLSSC-GLSNSA 224 (243)
Q Consensus 150 ~l~~l~-~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~ 224 (243)
.+..++ +|++|++++|. +++. .++..+..+++|++|++++|. +++..+ ..+..+ ++|+.|++++| .+++..
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~l~~l-~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSVMLKNDCF--QEFFQL-NYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHH-HHHHHHHHCTTCSEEECTTCTTCCGGGG--GGGGGC-TTCCEEECTTCTTCCGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHH-HHHHHHhhCCCCCEEeCCCCCcCCHHHH--HHHhCC-CCCCEeeCCCCCCCCHHH
Confidence 344555 66666666653 2211 122344556666666666665 443333 344445 66666666666 333333
Q ss_pred chhHHhhhccCceeeCCCC
Q 044082 225 YHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 225 ~~~l~~l~~~L~~L~l~~N 243 (243)
...+..+++ |++|++++|
T Consensus 265 ~~~l~~~~~-L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPT-LKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTT-CCEEECTTS
T ss_pred HHHHhcCCC-CCEEeccCc
Confidence 334555666 666666654
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=157.19 Aligned_cols=127 Identities=22% Similarity=0.287 Sum_probs=109.0
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|++++ |.+.+..|..+.++++|++|++++|.++.. .|..+..+++|++|++++|.+. .+|.. .
T Consensus 21 ~~L~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQ--------NYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp TTCSEEECCS--------SCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccEEECCC--------CcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence 6899999999 588887778899999999999999999885 6889999999999999999998 56665 7
Q ss_pred CCCCcEEEccCCcccc-CCccccCCCCCCCEEEcCCccccCCcchHHHhhccccc--cccccccccC
Q 044082 130 LTNLQSLNLGYNSLYV-SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASL--RDLYLASSTL 193 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~l~~n~~ 193 (243)
+++|++|++++|.+++ ..|..++.+++|++|++++|.+... .+..+++| ++|++++|.+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTT
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----hccccccceeeEEEeecccc
Confidence 8999999999999987 4678899999999999999998763 44556666 8888888877
No 82
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=6.1e-19 Score=154.97 Aligned_cols=176 Identities=17% Similarity=0.206 Sum_probs=100.2
Q ss_pred CCCCCCCCCCCCc-----ccceE-EecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCc
Q 044082 26 SSWGSDEGRKDCC-----KWSGV-QCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPI 99 (243)
Q Consensus 26 ~~w~~~~~~~~~~-----~~~~~-~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 99 (243)
.+|. .+..+| .|.++ .|.. .+++.|+++++ .+++ +|..+. ++|++|++++|.++. +
T Consensus 34 ~~W~---~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n--------~L~~-lp~~l~--~~L~~L~Ls~N~l~~--i 95 (571)
T 3cvr_A 34 DKWE---KQALPGENRNEAVSLLKECLI--NQFSELQLNRL--------NLSS-LPDNLP--PQITVLEITQNALIS--L 95 (571)
T ss_dssp HHHH---TTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSS--------CCSC-CCSCCC--TTCSEEECCSSCCSC--C
T ss_pred HHHh---ccCCccccccchhhhcccccc--CCccEEEeCCC--------CCCc-cCHhHc--CCCCEEECcCCCCcc--c
Confidence 4565 355566 68888 6753 47888888885 4443 443332 445555555555543 3
Q ss_pred chhhcCCCCCcEEecCCccccccCCcCCC------------------CCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082 100 PEFIGFFTKLRFLDLSLANFSGRIPYQLG------------------NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD 161 (243)
Q Consensus 100 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 161 (243)
| ..+++|++|++++|.+++ +|. +. .+++|++|++++|.+++ +|. .+++|++|+
T Consensus 96 p---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 96 P---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLS 166 (571)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred c---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence 3 223444444444444442 333 22 34455555555555543 232 345566666
Q ss_pred cCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCC-------cEEECCCCccccccchhHHhhhcc
Q 044082 162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSL-------ALLDLSSCGLSNSAYHWLFKISSN 234 (243)
Q Consensus 162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L-------~~L~L~~n~i~~~~~~~l~~l~~~ 234 (243)
+++|.++.+|. +. ++|+.|++++|.++.++. +. .+| +.|++++|.|+ .+|..+..+++
T Consensus 167 Ls~N~L~~lp~----l~--~~L~~L~Ls~N~L~~lp~----~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~- 231 (571)
T 3cvr_A 167 VRNNQLTFLPE----LP--ESLEALDVSTNLLESLPA----VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDP- 231 (571)
T ss_dssp CCSSCCSCCCC----CC--TTCCEEECCSSCCSSCCC----CC-----------CCEEEECCSSCCC-CCCGGGGGSCT-
T ss_pred CCCCCCCCcch----hh--CCCCEEECcCCCCCchhh----HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCC-
Confidence 66666665543 11 567777777777664322 11 244 88888888887 57777878877
Q ss_pred CceeeCCCC
Q 044082 235 LLALDLNSN 243 (243)
Q Consensus 235 L~~L~l~~N 243 (243)
|++|++++|
T Consensus 232 L~~L~L~~N 240 (571)
T 3cvr_A 232 TCTIILEDN 240 (571)
T ss_dssp TEEEECCSS
T ss_pred CCEEEeeCC
Confidence 888888876
No 83
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=2.1e-19 Score=157.60 Aligned_cols=172 Identities=22% Similarity=0.213 Sum_probs=146.9
Q ss_pred EecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCc
Q 044082 55 LNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQ 134 (243)
Q Consensus 55 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 134 (243)
.|.++ +.++ .+|..+. ++|++|++++|.++.. .|..+..+++|++|++++|.+.+..|..++.+++|+
T Consensus 10 c~~~~--------~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 10 CDGRS--------RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp EECTT--------SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EECCC--------Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence 67777 4655 4666554 7899999999999886 678899999999999999999987778899999999
Q ss_pred EEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccccccccccc-CCCCCCCCcccccCCCCCcEE
Q 044082 135 SLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASST-LPSINRPSLSSMNSSTSLALL 213 (243)
Q Consensus 135 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~~L 213 (243)
+|++++|.+++..+..++.+++|++|++++|.+...+. +..+..+++|++|++++|. +..+++ ..+..+ ++|+.|
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~l-~~L~~L 153 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGL-TSLNEL 153 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECT--TTTTTC-CEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccch-hhhhhccCCccEEECCCCccccccCH--hhhhcc-cccCee
Confidence 99999999998888889999999999999999986521 2268899999999999998 444443 456666 999999
Q ss_pred ECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 214 DLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 214 ~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
++++|.+++..|..+..+++ |++|++++|
T Consensus 154 ~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n 182 (549)
T 2z81_A 154 EIKALSLRNYQSQSLKSIRD-IHHLTLHLS 182 (549)
T ss_dssp EEEETTCCEECTTTTTTCSE-EEEEEEECS
T ss_pred eccCCcccccChhhhhcccc-CceEecccC
Confidence 99999999889999999998 999998765
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=2.7e-18 Score=149.74 Aligned_cols=160 Identities=23% Similarity=0.196 Sum_probs=112.3
Q ss_pred CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCC--CCcchhhcCCCCCcEEecCCccccccCCcC
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLG--NPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 126 (243)
...++.|++++ |.+.+.+|..+.++++|++|++++|.++. . +|..+..+++|++|++++|.+.+.+|..
T Consensus 323 l~~L~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 323 ISPFLHLDFSN--------NLLTDTVFENCGHLTELETLILQMNQLKELSK-IAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCCCCEEECCS--------SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH-HHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred CCcccEEEeEC--------CccChhhhhhhccCCCCCEEEccCCccCcccc-chHHHhhCCCCCEEECCCCcCCcccccc
Confidence 34667777777 47777677777777888888888887765 2 4566777778888888888777545543
Q ss_pred -CCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCccccc
Q 044082 127 -LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMN 205 (243)
Q Consensus 127 -l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 205 (243)
+..+++|++|++++|.+++..|..+. ++|++|++++|.++..|. .+..+++|++|++++|.++.++. ..+..
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~---~~~~l~~L~~L~L~~N~l~~l~~--~~~~~ 466 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPK---QVVKLEALQELNVASNQLKSVPD--GIFDR 466 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCG---GGGGCTTCCEEECCSSCCCCCCT--TTTTT
T ss_pred hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccch---hhhcCCCCCEEECCCCcCCccCH--HHhcc
Confidence 66777788888888877766655444 677788888887776654 45577778888888887776554 23455
Q ss_pred CCCCCcEEECCCCccccccc
Q 044082 206 SSTSLALLDLSSCGLSNSAY 225 (243)
Q Consensus 206 ~~~~L~~L~L~~n~i~~~~~ 225 (243)
+ ++|+.|++++|.++...+
T Consensus 467 l-~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 467 L-TSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp C-TTCCEEECCSSCBCCCHH
T ss_pred C-CcccEEECcCCCCcccCC
Confidence 5 778888888887776443
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=159.08 Aligned_cols=167 Identities=20% Similarity=0.188 Sum_probs=139.6
Q ss_pred CCceEEEecCCCCCCCCCCCCccccc-chhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcC-
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNI-NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ- 126 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~- 126 (243)
..+++.|||++| .+.+.+ |..+.++++|++|++++|.+... .|..+..+++|++|++++|.+.+..|..
T Consensus 47 l~~L~~LdLs~n--------~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 117 (844)
T 3j0a_A 47 LEQLQLLELGSQ--------YTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDG 117 (844)
T ss_dssp CCSCSEEEECTT--------CCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred cccCeEEeCCCC--------CCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCc
Confidence 468999999994 566666 77899999999999999999986 7999999999999999999999766665
Q ss_pred -CCCCCCCcEEEccCCccccCCc-cccCCCCCCCEEEcCCccccCC-cchHHHhhcc--ccccccccccccCCCCCCCCc
Q 044082 127 -LGNLTNLQSLNLGYNSLYVSKF-GWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSL--ASLRDLYLASSTLPSINRPSL 201 (243)
Q Consensus 127 -l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~ 201 (243)
++.+++|++|++++|.+++..+ ..++.+++|++|++++|.+... +. .+..+ ++|+.|++++|.+.+..+ .
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~---~l~~l~~~~L~~L~L~~n~l~~~~~--~ 192 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH---ELEPLQGKTLSFFSLAANSLYSRVS--V 192 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG---GGHHHHHCSSCCCEECCSBSCCCCC--C
T ss_pred cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH---HcccccCCccceEECCCCccccccc--c
Confidence 8899999999999999987654 5789999999999999999887 33 55555 799999999999988766 4
Q ss_pred ccccCCC------CCcEEECCCCccccccchhHHh
Q 044082 202 SSMNSST------SLALLDLSSCGLSNSAYHWLFK 230 (243)
Q Consensus 202 ~~~~~~~------~L~~L~L~~n~i~~~~~~~l~~ 230 (243)
.+..+ . +|+.|++++|.+++..+..+..
T Consensus 193 ~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 193 DWGKC-MNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp CCCSS-SCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred chhhc-CCccccCceeEEecCCCcCchhHHHHHHh
Confidence 44443 3 4999999999887766655543
No 86
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1.8e-18 Score=153.66 Aligned_cols=154 Identities=26% Similarity=0.199 Sum_probs=131.1
Q ss_pred ccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccC
Q 044082 73 NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLS 152 (243)
Q Consensus 73 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 152 (243)
.+|..+. +++++|+|++|.++.. .+..|..+++|++|++++|.+++..+..|+.+++|++|++++|+++...+..|.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 3554432 4799999999999985 567899999999999999999966677899999999999999999987778899
Q ss_pred CCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhh
Q 044082 153 HLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS 232 (243)
Q Consensus 153 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~ 232 (243)
++++|++|++++|.++..+. ..+..+++|++|++++|.++..... ..+..+ ++|++|++++|++++..+..+..+.
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP-EYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCC-GGGGGC-TTCCEEECCSSCCCEECGGGGHHHH
T ss_pred CCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCc-hhhccc-hhhhhhcccCccccccccccccchh
Confidence 99999999999999999853 2688999999999999999876431 345556 9999999999999987777777776
Q ss_pred c
Q 044082 233 S 233 (243)
Q Consensus 233 ~ 233 (243)
+
T Consensus 198 ~ 198 (635)
T 4g8a_A 198 Q 198 (635)
T ss_dssp T
T ss_pred h
Confidence 5
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=4.7e-20 Score=152.20 Aligned_cols=180 Identities=22% Similarity=0.220 Sum_probs=140.1
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
..++.+++++ |.+.+..+. +..+++|++|++++|.++...++..+..+++|++|++++|.+.+..+..++.
T Consensus 70 ~~l~~L~l~~--------n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 70 QGVIAFRCPR--------SFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp TTCSEEECTT--------CEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred ccceEEEcCC--------ccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 5788899998 477766554 5678999999999998765336777888999999999999888777777888
Q ss_pred CCCCcEEEccCC-ccccC-CccccCCCCCCCEEEcCCc-cccCCcchHHHhhccc-ccccccccccc--CC-CCCCCCcc
Q 044082 130 LTNLQSLNLGYN-SLYVS-KFGWLSHLNKLTQLDLDFV-DLSEASDWLQVITSLA-SLRDLYLASST--LP-SINRPSLS 202 (243)
Q Consensus 130 l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~~~ 202 (243)
+++|++|++++| .+++. .+..+..+++|++|++++| .+++.. ++..+..++ +|++|++++|. ++ +..+ ..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~--~~ 217 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-VQVAVAHVSETITQLNLSGYRKNLQKSDLS--TL 217 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-HHHHHHHSCTTCCEEECCSCGGGSCHHHHH--HH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH-HHHHHHhcccCCCEEEeCCCcccCCHHHHH--HH
Confidence 999999999998 56652 4555777889999999999 777542 234678888 99999999984 43 1122 23
Q ss_pred cccCCCCCcEEECCCCc-cccccchhHHhhhccCceeeCCCC
Q 044082 203 SMNSSTSLALLDLSSCG-LSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 203 ~~~~~~~L~~L~L~~n~-i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+..+ ++|+.|++++|. +++..+..+..+++ |++|++++|
T Consensus 218 ~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~-L~~L~l~~~ 257 (336)
T 2ast_B 218 VRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNY-LQHLSLSRC 257 (336)
T ss_dssp HHHC-TTCSEEECTTCTTCCGGGGGGGGGCTT-CCEEECTTC
T ss_pred HhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCC-CCEeeCCCC
Confidence 4455 899999999998 77777888888888 999999876
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=146.39 Aligned_cols=174 Identities=20% Similarity=0.133 Sum_probs=138.4
Q ss_pred CCceEEEecCCCCCCCCCCCCcccccc----hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCcccccc--
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNIN----SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGR-- 122 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~-- 122 (243)
..+++.|++++ |.+.+..+ ..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+.
T Consensus 116 ~~~L~~L~Ls~--------n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 186 (310)
T 4glp_A 116 GLALSSLRLRN--------VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERG 186 (310)
T ss_dssp CBCCSSCEEES--------CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHH
T ss_pred CCCCCEEEeec--------ccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchh
Confidence 45788899999 57776544 3456799999999999999886 778899999999999999987642
Q ss_pred C--CcCCCCCCCCcEEEccCCccccCCc--c-ccCCCCCCCEEEcCCccccCC-cchHHHhhcc---ccccccccccccC
Q 044082 123 I--PYQLGNLTNLQSLNLGYNSLYVSKF--G-WLSHLNKLTQLDLDFVDLSEA-SDWLQVITSL---ASLRDLYLASSTL 193 (243)
Q Consensus 123 ~--~~~l~~l~~L~~L~l~~n~l~~~~~--~-~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l---~~L~~L~l~~n~~ 193 (243)
. +..++.+++|++|++++|.++.... . .+..+++|++|++++|.+.+. |. .+..+ ++|++|++++|.+
T Consensus 187 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~---~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 187 LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP---SAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS---CCSSCCCCTTCCCEECCSSCC
T ss_pred hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh---hHHhccCcCcCCEEECCCCCC
Confidence 2 2334688999999999999974221 1 246789999999999999987 54 44444 7999999999999
Q ss_pred CCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 194 PSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 194 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+.++. .+ . ++|+.|++++|++++ +|. +..+++ |++|++++|
T Consensus 264 ~~lp~---~~--~-~~L~~L~Ls~N~l~~-~~~-~~~l~~-L~~L~L~~N 304 (310)
T 4glp_A 264 EQVPK---GL--P-AKLRVLDLSSNRLNR-APQ-PDELPE-VDNLTLDGN 304 (310)
T ss_dssp CSCCS---CC--C-SCCSCEECCSCCCCS-CCC-TTSCCC-CSCEECSST
T ss_pred Cchhh---hh--c-CCCCEEECCCCcCCC-Cch-hhhCCC-ccEEECcCC
Confidence 96543 33 2 789999999999996 343 567788 999999987
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=4.9e-19 Score=153.45 Aligned_cols=129 Identities=19% Similarity=0.163 Sum_probs=91.9
Q ss_pred CCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccC-CCCCCCEEEcCCccccCCcchHHHhhccccc
Q 044082 105 FFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLS-HLNKLTQLDLDFVDLSEASDWLQVITSLASL 183 (243)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 183 (243)
.+++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++.+. ...+++|
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~L 193 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKL 193 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTC
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc----cccCCCC
Confidence 456777788888777766666777777788888888777776666664 57777777887777776642 2346777
Q ss_pred cccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 184 RDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 184 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+.|++++|.+++.++ .+..+ ++|+.|++++|.+++ +|..+..+++ |+.|++++|
T Consensus 194 ~~L~Ls~N~l~~~~~---~~~~l-~~L~~L~Ls~N~l~~-lp~~l~~l~~-L~~L~l~~N 247 (487)
T 3oja_A 194 KTLDLSSNKLAFMGP---EFQSA-AGVTWISLRNNKLVL-IEKALRFSQN-LEHFDLRGN 247 (487)
T ss_dssp CEEECCSSCCCEECG---GGGGG-TTCSEEECTTSCCCE-ECTTCCCCTT-CCEEECTTC
T ss_pred CEEECCCCCCCCCCH---hHcCC-CCccEEEecCCcCcc-cchhhccCCC-CCEEEcCCC
Confidence 777777777776554 45555 777777777777773 6666666676 777777766
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=4.3e-18 Score=150.82 Aligned_cols=165 Identities=22% Similarity=0.244 Sum_probs=120.5
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
..++.|+++++ .+.. ++ .+..+++|+.|+|++|.+... +. +..+++|+.|++++|.+.+ ++ .+..
T Consensus 43 ~~L~~L~l~~n--------~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~ 107 (605)
T 1m9s_A 43 NSIDQIIANNS--------DIKS-VQ-GIQYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDENKIKD-LS-SLKD 107 (605)
T ss_dssp TTCCCCBCTTC--------CCCC-CT-TGGGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCC-CT-TSTT
T ss_pred CCCCEEECcCC--------CCCC-Ch-HHccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCCCCCC-Ch-hhcc
Confidence 45777777773 5543 33 477788888888888888773 33 7788888888888888773 33 5777
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
+++|++|++++|.+... ..+..+++|+.|++++|.+.+.+ .+..+++|+.|+|++|.+.+..+ +..+ ++
T Consensus 108 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~~~~----l~~l-~~ 176 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIVP----LAGL-TK 176 (605)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCCG----GGGSCTTCSEEECCSSCCCCCGG----GTTC-TT
T ss_pred CCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCch----hhcccCCCCEEECcCCcCCCchh----hccC-CC
Confidence 88888888888887753 34777888888888888887763 56777888888888888876533 4555 78
Q ss_pred CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
|+.|+|++|.|++ ++ .+..+++ |+.|+|++|
T Consensus 177 L~~L~Ls~N~i~~-l~-~l~~l~~-L~~L~L~~N 207 (605)
T 1m9s_A 177 LQNLYLSKNHISD-LR-ALAGLKN-LDVLELFSQ 207 (605)
T ss_dssp CCEEECCSSCCCB-CG-GGTTCTT-CSEEECCSE
T ss_pred CCEEECcCCCCCC-Ch-HHccCCC-CCEEEccCC
Confidence 8888888888875 33 4777777 888888765
No 91
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=1.4e-19 Score=163.73 Aligned_cols=203 Identities=18% Similarity=0.090 Sum_probs=95.9
Q ss_pred HHHHHHHHHhhhcc-cCCCCCCCCCCCCCCCCCCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCC
Q 044082 5 EKERQALLMFKQGL-VDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQH 83 (243)
Q Consensus 5 ~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (243)
+.++++++++..+. +..+.....|.. .......|.++.+.. ++++.|+|.++ .+.. .+..+.....
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~--~~~~~l~L~~n--------~~~~-~~~~~l~~l~ 197 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVST--PLTPKIELFAN--------GKDE-ANQALLQHKK 197 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceecC--CccceEEeeCC--------CCCc-chhhHhhcCc
Confidence 34678889988887 444444456753 445567898887754 67888998874 4443 2222222222
Q ss_pred CcEE-----EccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCC
Q 044082 84 LNYL-----DLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLT 158 (243)
Q Consensus 84 L~~L-----~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 158 (243)
|+.+ ++..|.+.. .+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|+
T Consensus 198 Ls~~~i~~~~~~~n~~~~--~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 273 (727)
T 4b8c_D 198 LSQYSIDEDDDIENRMVM--PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLR 273 (727)
T ss_dssp --------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCC
T ss_pred cCcccccCccccccceec--ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCC
Confidence 2222 222233331 4566677777777777777776 66666667777777777777776 5566677777777
Q ss_pred EEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhh
Q 044082 159 QLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI 231 (243)
Q Consensus 159 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l 231 (243)
+|+|++|.++.+|. .+..+++|++|+|++|.++.++. .+..+ ++|+.|+|++|.|++.+|..+...
T Consensus 274 ~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~lp~---~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 274 VLDLSHNRLTSLPA---ELGSCFQLKYFYFFDNMVTTLPW---EFGNL-CNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp EEECTTSCCSSCCS---SGGGGTTCSEEECCSSCCCCCCS---STTSC-TTCCCEECTTSCCCSHHHHHHHHH
T ss_pred EEeCcCCcCCccCh---hhcCCCCCCEEECCCCCCCccCh---hhhcC-CCccEEeCCCCccCCCChHHHhhc
Confidence 77777777775554 56677777777777777764433 45555 777777777777776666665443
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=3e-18 Score=137.00 Aligned_cols=147 Identities=20% Similarity=0.181 Sum_probs=114.6
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|++++| .+.. ++ .+..+++|++|++++|.++. ++. +..+++|++|++++|.+.+ +|... .
T Consensus 41 ~~L~~L~l~~n--------~i~~-l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~ 105 (263)
T 1xeu_A 41 SGVQNFNGDNS--------NIQS-LA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S 105 (263)
T ss_dssp TTCSEEECTTS--------CCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C
T ss_pred CcCcEEECcCC--------Cccc-ch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCC-cCccc-c
Confidence 57888888884 6553 44 67888899999999998887 444 8888899999999998884 44432 3
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS 209 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 209 (243)
++|++|++++|.+++. ..+..+++|+.|++++|.+++.+ .+..+++|++|++++|.+.+. ..+..+ ++
T Consensus 106 -~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N~i~~~----~~l~~l-~~ 173 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGNEITNT----GGLTRL-KK 173 (263)
T ss_dssp -SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTSCCCBC----TTSTTC-CC
T ss_pred -CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCCcCcch----HHhccC-CC
Confidence 8889999999988764 34788888999999999888874 567788899999999988876 245556 88
Q ss_pred CcEEECCCCccccc
Q 044082 210 LALLDLSSCGLSNS 223 (243)
Q Consensus 210 L~~L~L~~n~i~~~ 223 (243)
|+.|++++|.+++.
T Consensus 174 L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 174 VNWIDLTGQKCVNE 187 (263)
T ss_dssp CCEEEEEEEEEECC
T ss_pred CCEEeCCCCcccCC
Confidence 89999999888754
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=1.3e-17 Score=143.65 Aligned_cols=148 Identities=30% Similarity=0.368 Sum_probs=96.7
Q ss_pred hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCC
Q 044082 77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNK 156 (243)
Q Consensus 77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 156 (243)
.+..+++|++|++++|.++.. +. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 310 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 310 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred hhhcCCCCCEEECCCCccccc--hh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence 455666666666666666553 22 5666666666666666663322 5566677777777776665433 566677
Q ss_pred CCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCc
Q 044082 157 LTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLL 236 (243)
Q Consensus 157 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~ 236 (243)
|+.|++++|.+.+.+. +..+++|+.|++++|.+++. ..+..+ ++|+.|++++|++++..| +..+++ |+
T Consensus 311 L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~----~~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~-L~ 378 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP----VSSLTKLQRLFFYNNKVSDV----SSLANL-TNINWLSAGHNQISDLTP--LANLTR-IT 378 (466)
T ss_dssp CSEEECCSSCCSCCGG----GGGCTTCCEEECCSSCCCCC----GGGTTC-TTCCEEECCSSCCCBCGG--GTTCTT-CC
T ss_pred CCEEECcCCcCCCchh----hccCccCCEeECCCCccCCc----hhhccC-CCCCEEeCCCCccCccch--hhcCCC-CC
Confidence 7777777777766632 45667777777777777664 245555 778888888888876555 677777 88
Q ss_pred eeeCCCC
Q 044082 237 ALDLNSN 243 (243)
Q Consensus 237 ~L~l~~N 243 (243)
+|++++|
T Consensus 379 ~L~l~~n 385 (466)
T 1o6v_A 379 QLGLNDQ 385 (466)
T ss_dssp EEECCCE
T ss_pred EEeccCC
Confidence 8887765
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=1.2e-19 Score=152.74 Aligned_cols=184 Identities=18% Similarity=0.150 Sum_probs=117.5
Q ss_pred CceEEEecCCCCCCCCCCCCccc----ccchhhccCCCCcEEEccCCCCCCC---CcchhhcCC---------CCCcEEe
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRG----NINSSLLELQHLNYLDLSVNDFLGN---PIPEFIGFF---------TKLRFLD 113 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l---------~~L~~L~ 113 (243)
.+++.|+|++ |.+.+ .++..+..+++|++|++++|.++.. .++..+..+ ++|++|+
T Consensus 94 ~~L~~L~Ls~--------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 94 PKLHTVRLSD--------NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp TTCCEEECCS--------CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred CcccEEECCC--------CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 4555666665 35554 3555666667777777777666432 012222233 6777777
Q ss_pred cCCcccc-ccCC---cCCCCCCCCcEEEccCCcccc-----CCccccCCCCCCCEEEcCCccccCC--cchHHHhhcccc
Q 044082 114 LSLANFS-GRIP---YQLGNLTNLQSLNLGYNSLYV-----SKFGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLAS 182 (243)
Q Consensus 114 l~~~~~~-~~~~---~~l~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~ 182 (243)
+++|.+. +.++ ..+..+++|++|++++|.++. ..+..+..+++|++|++++|.+++. ..++..+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 7777665 2223 244566778888888887762 2233567778888888888887532 223456778888
Q ss_pred ccccccccccCCCCCCC--Cccc--ccCCCCCcEEECCCCcccc----ccchhH-HhhhccCceeeCCCC
Q 044082 183 LRDLYLASSTLPSINRP--SLSS--MNSSTSLALLDLSSCGLSN----SAYHWL-FKISSNLLALDLNSN 243 (243)
Q Consensus 183 L~~L~l~~n~~~~~~~~--~~~~--~~~~~~L~~L~L~~n~i~~----~~~~~l-~~l~~~L~~L~l~~N 243 (243)
|++|++++|.+++.... ...+ ... ++|+.|++++|.|++ .+|..+ .++++ |++|++++|
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~-~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~-L~~L~l~~N 313 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPD-LLFLELNGN 313 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSS-CCCCEEECCSSCCBHHHHHHHHHHHHHHCTT-CCEEECTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccC-CCeEEEECcCCcCCHHHHHHHHHHHHhcCCC-ceEEEccCC
Confidence 88888888887654110 0122 224 889999999999986 477777 55687 999998876
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=1.2e-17 Score=147.05 Aligned_cols=162 Identities=22% Similarity=0.179 Sum_probs=138.4
Q ss_pred CCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCC-cchhhcCCCCCcEEecCCccccccCCc-
Q 044082 48 RTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNP-IPEFIGFFTKLRFLDLSLANFSGRIPY- 125 (243)
Q Consensus 48 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~- 125 (243)
....++.|++++ |.+.+.+|..+.++++|++|++++|.++... +|..+..+++|++|++++|.+.+.+|.
T Consensus 351 ~l~~L~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 351 SPSSFTFLNFTQ--------NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp SCCCCCEEECCS--------SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred CCCCceEEECCC--------CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 346788999999 5889888999999999999999999998631 356789999999999999999975665
Q ss_pred CCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCccccc
Q 044082 126 QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMN 205 (243)
Q Consensus 126 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 205 (243)
.+..+++|++|++++|.+++..|..+. ++|++|++++|.++.+|. .+..+++|++|++++|.++.+++ ..+..
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~---~~~~l~~L~~L~L~~N~l~~l~~--~~~~~ 495 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPK---DVTHLQALQELNVASNQLKSVPD--GVFDR 495 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCT---TTTSSCCCSEEECCSSCCCCCCT--TSTTT
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccCh---hhcCCCCCCEEECCCCCCCCCCH--HHHhc
Confidence 478899999999999999887776554 789999999999998865 55689999999999999997665 33666
Q ss_pred CCCCCcEEECCCCccccccc
Q 044082 206 SSTSLALLDLSSCGLSNSAY 225 (243)
Q Consensus 206 ~~~~L~~L~L~~n~i~~~~~ 225 (243)
+ ++|+.|++++|.++...+
T Consensus 496 l-~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 496 L-TSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp C-TTCCCEECCSCCBCCCHH
T ss_pred C-CCCCEEEecCCCcCCCcc
Confidence 6 999999999999987654
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=6.2e-19 Score=147.27 Aligned_cols=181 Identities=22% Similarity=0.213 Sum_probs=82.9
Q ss_pred ceEEEecCCCCCCCCCCCCcccccc----hhhccCC-CCcEEEccCCCCCCCCcchhhcCC-----CCCcEEecCCcccc
Q 044082 51 HVIMLNLKYKVDPVCPNRPLRGNIN----SSLLELQ-HLNYLDLSVNDFLGNPIPEFIGFF-----TKLRFLDLSLANFS 120 (243)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~l~~~~~~ 120 (243)
.++.|||++ |.+.+..+ ..+.+++ +|++|++++|.++.. .+..+..+ ++|++|++++|.+.
T Consensus 23 ~L~~L~Ls~--------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 23 GVTSLDLSL--------NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp TCCEEECTT--------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CceEEEccC--------CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCC
Confidence 355566665 34444433 4445555 555555555555543 34444332 55555555555555
Q ss_pred ccCCcC----CCCC-CCCcEEEccCCccccCCcccc----CC-CCCCCEEEcCCccccCC--cchHHHhhccc-cccccc
Q 044082 121 GRIPYQ----LGNL-TNLQSLNLGYNSLYVSKFGWL----SH-LNKLTQLDLDFVDLSEA--SDWLQVITSLA-SLRDLY 187 (243)
Q Consensus 121 ~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~--~~~~~~~~~l~-~L~~L~ 187 (243)
+..+.. +..+ ++|++|++++|.++...+..+ .. ..+|++|++++|.+.+. ..++..+..++ +|++|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 433332 2222 455555555555554433222 12 23555555555555543 12223333333 555555
Q ss_pred cccccCCCCCCCCcccc----cCCCCCcEEECCCCccccc----cchhHHhhh-ccCceeeCCCC
Q 044082 188 LASSTLPSINRPSLSSM----NSSTSLALLDLSSCGLSNS----AYHWLFKIS-SNLLALDLNSN 243 (243)
Q Consensus 188 l~~n~~~~~~~~~~~~~----~~~~~L~~L~L~~n~i~~~----~~~~l~~l~-~~L~~L~l~~N 243 (243)
+++|.+++..+ ..+. ...++|+.|++++|.|++. ++..+.... + |++|++++|
T Consensus 174 Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~-L~~L~Ls~N 235 (362)
T 3goz_A 174 LRGNNLASKNC--AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH-VVSLNLCLN 235 (362)
T ss_dssp CTTSCGGGSCH--HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT-CCEEECCSS
T ss_pred ecCCCCchhhH--HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC-ceEEECcCC
Confidence 55555544332 1111 1102555555555555432 233333322 3 555555544
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=3.5e-17 Score=141.05 Aligned_cols=147 Identities=29% Similarity=0.299 Sum_probs=99.4
Q ss_pred hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
++.+++|+.|++++|.++. + +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|
T Consensus 217 ~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKD--I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ccccCCCCEEECCCCCccc--c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 4556666666666666554 2 245666677777777776664333 5667777777777777765433 6667777
Q ss_pred CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237 (243)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~ 237 (243)
+.|++++|.+.+.+ .+..+++|++|++++|.+++..+ +..+ ++|+.|++++|.+++. ..+..+++ |++
T Consensus 290 ~~L~L~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~~~~----~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~-L~~ 357 (466)
T 1o6v_A 290 TNLELNENQLEDIS----PISNLKNLTYLTLYFNNISDISP----VSSL-TKLQRLFFYNNKVSDV--SSLANLTN-INW 357 (466)
T ss_dssp SEEECCSSCCSCCG----GGGGCTTCSEEECCSSCCSCCGG----GGGC-TTCCEEECCSSCCCCC--GGGTTCTT-CCE
T ss_pred CeEEcCCCcccCch----hhcCCCCCCEEECcCCcCCCchh----hccC-ccCCEeECCCCccCCc--hhhccCCC-CCE
Confidence 77777777777664 25667778888888887776543 4455 7888888888888753 35777777 888
Q ss_pred eeCCCC
Q 044082 238 LDLNSN 243 (243)
Q Consensus 238 L~l~~N 243 (243)
|++++|
T Consensus 358 L~l~~n 363 (466)
T 1o6v_A 358 LSAGHN 363 (466)
T ss_dssp EECCSS
T ss_pred EeCCCC
Confidence 888776
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=2.2e-19 Score=151.18 Aligned_cols=185 Identities=21% Similarity=0.198 Sum_probs=106.6
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhh-------ccCCCCcEEEccCCCCCCC---CcchhhcCCCCCcEEecCCccc
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSL-------LELQHLNYLDLSVNDFLGN---PIPEFIGFFTKLRFLDLSLANF 119 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-------~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~~~~ 119 (243)
.+++.|+|++|. .+.+.+.+|..+ ..+++|++|++++|.+... .++..+..+++|++|++++|.+
T Consensus 60 ~~L~~L~Ls~~~-----~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 60 KDLEIAEFSDIF-----TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTCCEEECCSCC-----TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCccEEeCcccc-----cCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 456666666531 123444445444 5667777777777776652 1455666677777777777766
Q ss_pred cccCCcCCC----CC---------CCCcEEEccCCcccc-CCc---cccCCCCCCCEEEcCCccccCC--cchHH-Hhhc
Q 044082 120 SGRIPYQLG----NL---------TNLQSLNLGYNSLYV-SKF---GWLSHLNKLTQLDLDFVDLSEA--SDWLQ-VITS 179 (243)
Q Consensus 120 ~~~~~~~l~----~l---------~~L~~L~l~~n~l~~-~~~---~~l~~l~~L~~L~l~~n~l~~~--~~~~~-~~~~ 179 (243)
.+..+..+. .+ ++|++|++++|+++. ..+ ..+..+++|++|++++|.+... ..+.. .+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 533332222 22 667777777776652 222 2345566777777777766632 11222 5556
Q ss_pred cccccccccccccCC----CCCCCCcccccCCCCCcEEECCCCccccc----cchhHHh--hhccCceeeCCCC
Q 044082 180 LASLRDLYLASSTLP----SINRPSLSSMNSSTSLALLDLSSCGLSNS----AYHWLFK--ISSNLLALDLNSN 243 (243)
Q Consensus 180 l~~L~~L~l~~n~~~----~~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~--l~~~L~~L~l~~N 243 (243)
+++|++|++++|.++ ...+ ..+..+ ++|+.|+|++|.|++. ++..+.. +++ |++|++++|
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~--~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~-L~~L~L~~n 284 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALA--IALKSW-PNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYN 284 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHH--HHGGGC-TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC-CCEEECCSS
T ss_pred CCCccEEECcCCCCCcHHHHHHH--HHHccC-CCcCEEECCCCCCchhhHHHHHHHHhhccCCC-eEEEECcCC
Confidence 677777777777664 2222 234445 7777777777777654 3444433 566 777777765
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.1e-17 Score=134.04 Aligned_cols=147 Identities=26% Similarity=0.291 Sum_probs=127.6
Q ss_pred hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.. ..+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC
Confidence 5678999999999999987 44 48889999999999999995443 88999999999999999863 348999999
Q ss_pred CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237 (243)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~ 237 (243)
++|++++|.+.+.+ .+..+++|++|++++|.+++. ..+..+ ++|+.|++++|.+++..+ +..+++ |++
T Consensus 115 ~~L~L~~n~i~~~~----~l~~l~~L~~L~l~~n~l~~~----~~l~~l-~~L~~L~L~~N~l~~~~~--l~~l~~-L~~ 182 (291)
T 1h6t_A 115 KSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI----TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTK-LQN 182 (291)
T ss_dssp CEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCC----GGGGGC-TTCSEEECCSSCCCCCGG--GTTCTT-CCE
T ss_pred CEEECCCCcCCCCh----hhcCCCCCCEEEccCCcCCcc----hhhccC-CCCCEEEccCCccccchh--hcCCCc-cCE
Confidence 99999999999874 577899999999999999876 356677 999999999999996444 888898 999
Q ss_pred eeCCCC
Q 044082 238 LDLNSN 243 (243)
Q Consensus 238 L~l~~N 243 (243)
|++++|
T Consensus 183 L~L~~N 188 (291)
T 1h6t_A 183 LYLSKN 188 (291)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 999987
No 100
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=5.2e-17 Score=139.64 Aligned_cols=163 Identities=20% Similarity=0.152 Sum_probs=93.0
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (243)
.+++.|++++ |.+++. | .++.+++|++|++++|.+++ +| ++.+++|++|++++|.+.+. + ++.
T Consensus 42 ~~L~~L~Ls~--------n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 42 ATLTSLDCHN--------SSITDM-T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TTCCEEECCS--------SCCCCC-T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred CCCCEEEccC--------CCcccC-h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 4566777776 355542 3 46666666666666666665 32 55666666666666666632 2 556
Q ss_pred CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchH------------------HHhhccccccccccccc
Q 044082 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWL------------------QVITSLASLRDLYLASS 191 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------------------~~~~~l~~L~~L~l~~n 191 (243)
+++|++|++++|.+++. + ++.+++|++|++++|.+++.+- . ..+..+++|++|++++|
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDV-SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCC-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceecc-ccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence 66666666666666542 2 5556666666666666555420 0 01334455555555555
Q ss_pred cCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 192 TLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
.+++++ +..+ ++|+.|++++|.+++. .++.+++ |++|++++|
T Consensus 181 ~l~~l~-----l~~l-~~L~~L~l~~N~l~~~---~l~~l~~-L~~L~Ls~N 222 (457)
T 3bz5_A 181 KITELD-----VSQN-KLLNRLNCDTNNITKL---DLNQNIQ-LTFLDCSSN 222 (457)
T ss_dssp CCCCCC-----CTTC-TTCCEEECCSSCCSCC---CCTTCTT-CSEEECCSS
T ss_pred ccceec-----cccC-CCCCEEECcCCcCCee---ccccCCC-CCEEECcCC
Confidence 555431 3333 6666666666666642 2555666 777777665
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=2.9e-18 Score=143.16 Aligned_cols=174 Identities=24% Similarity=0.222 Sum_probs=136.2
Q ss_pred CCcccccchhhccCCCCcEEEccCCCCCCCCcc----hhhcCCC-CCcEEecCCccccccCCcCCCCC-----CCCcEEE
Q 044082 68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIP----EFIGFFT-KLRFLDLSLANFSGRIPYQLGNL-----TNLQSLN 137 (243)
Q Consensus 68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~ 137 (243)
+.+++.+|..+...++|++|++++|.++.. .+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|+
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 689998888878778899999999999885 55 6788898 89999999999997766666554 8999999
Q ss_pred ccCCccccCCccccC----CC-CCCCEEEcCCccccCCc--chHHHhhc-cccccccccccccCCCCCCC--CcccccCC
Q 044082 138 LGYNSLYVSKFGWLS----HL-NKLTQLDLDFVDLSEAS--DWLQVITS-LASLRDLYLASSTLPSINRP--SLSSMNSS 207 (243)
Q Consensus 138 l~~n~l~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~--~~~~~~~~-l~~L~~L~l~~n~~~~~~~~--~~~~~~~~ 207 (243)
+++|.++...+..+. .. ++|++|++++|.+.+.+ .+...+.. ..+|++|++++|.++..... ...+....
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 999999877665443 34 89999999999998883 22333444 36999999999999854330 01223331
Q ss_pred CCCcEEECCCCccccccchhHHhh-----hccCceeeCCCC
Q 044082 208 TSLALLDLSSCGLSNSAYHWLFKI-----SSNLLALDLNSN 243 (243)
Q Consensus 208 ~~L~~L~L~~n~i~~~~~~~l~~l-----~~~L~~L~l~~N 243 (243)
++|+.|++++|.+++..+..+... ++ |++|++++|
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~-L~~L~Ls~N 206 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPAS-VTSLDLSAN 206 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTT-CCEEECTTS
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCC-CCEEECCCC
Confidence 389999999999998777666554 46 999999987
No 102
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.72 E-value=9.4e-17 Score=138.06 Aligned_cols=142 Identities=20% Similarity=0.268 Sum_probs=71.3
Q ss_pred hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
++++++|++|++++|.++. ++ +..+++|++|++++|.+++. .++.+++|++|++++|...+.. .+..+++|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence 4444444444444444443 22 44444455555554444431 1333444444444444222222 24455666
Q ss_pred CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237 (243)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~ 237 (243)
++|++++|.+++.+ +..+++|+.|++++|.+++. .+..+ ++|+.|++++|++++ +| +..+++ |++
T Consensus 173 ~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~~-----~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~-L~~ 237 (457)
T 3bz5_A 173 TTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITKL-----DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQ-LTY 237 (457)
T ss_dssp CEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSCC-----CCTTC-TTCSEEECCSSCCSC-CC--CTTCTT-CSE
T ss_pred CEEECCCCccceec-----cccCCCCCEEECcCCcCCee-----ccccC-CCCCEEECcCCcccc-cC--ccccCC-CCE
Confidence 66666666666653 34556666666666666553 13334 556666666666654 33 445555 555
Q ss_pred eeCCCC
Q 044082 238 LDLNSN 243 (243)
Q Consensus 238 L~l~~N 243 (243)
|++++|
T Consensus 238 L~l~~N 243 (457)
T 3bz5_A 238 FDCSVN 243 (457)
T ss_dssp EECCSS
T ss_pred EEeeCC
Confidence 555554
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=2.5e-17 Score=136.95 Aligned_cols=169 Identities=20% Similarity=0.162 Sum_probs=109.5
Q ss_pred cccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcc-hhhcCCC
Q 044082 38 CKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIP-EFIGFFT 107 (243)
Q Consensus 38 ~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~ 107 (243)
|.+..|.|.... ..++.|+|++ |.++...+..|+++++|++|++++|.+... +| ..|..++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~--------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~ 79 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVL--------TKLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLP 79 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEES--------CCCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccC--------CcCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcch
Confidence 567888886422 4689999999 588754455789999999999999998664 44 4577888
Q ss_pred CCcE-EecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCC--------------------------CCEE
Q 044082 108 KLRF-LDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNK--------------------------LTQL 160 (243)
Q Consensus 108 ~L~~-L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~--------------------------L~~L 160 (243)
++++ +.+.+|.+....|..+..+++|++|++++|.+....+..+....+ ++.|
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 8765 556678888666777888899999999988876544333333333 4455
Q ss_pred EcCCccccCCcchHHHhhcccccccccccc-ccCCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082 161 DLDFVDLSEASDWLQVITSLASLRDLYLAS-STLPSINRPSLSSMNSSTSLALLDLSSCGLS 221 (243)
Q Consensus 161 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 221 (243)
++++|.++.++. ......+|+++.+++ |.++.++. ..+..+ ++|+.|++++|+|+
T Consensus 160 ~L~~N~i~~i~~---~~f~~~~L~~l~l~~~n~l~~i~~--~~f~~l-~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 160 WLNKNGIQEIHN---SAFNGTQLDELNLSDNNNLEELPN--DVFHGA-SGPVILDISRTRIH 215 (350)
T ss_dssp ECCSSCCCEECT---TSSTTEEEEEEECTTCTTCCCCCT--TTTTTE-ECCSEEECTTSCCC
T ss_pred ccccccccCCCh---hhccccchhHHhhccCCcccCCCH--HHhccC-cccchhhcCCCCcC
Confidence 555555554432 222334555555543 44444433 233444 66666666666666
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.7e-16 Score=125.68 Aligned_cols=163 Identities=25% Similarity=0.291 Sum_probs=126.2
Q ss_pred ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCC
Q 044082 51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNL 130 (243)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 130 (243)
+++.+++++ +.+++ ++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+. +. +..+
T Consensus 20 ~l~~l~l~~--------~~i~~-~~-~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l 84 (263)
T 1xeu_A 20 NAVKQNLGK--------QSVTD-LV-SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDL-SP-LKDL 84 (263)
T ss_dssp HHHHHHHTC--------SCTTS-EE-CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTC
T ss_pred HHHHHHhcC--------CCccc-cc-chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCC-hh-hccC
Confidence 345566666 45554 33 57788899999999998876 45 678889999999999988854 33 7888
Q ss_pred CCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCC
Q 044082 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSL 210 (243)
Q Consensus 131 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 210 (243)
++|++|++++|+++.. +. +.. ++|++|++++|.+++.+ .+..+++|++|++++|.+++. ..+..+ ++|
T Consensus 85 ~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~----~~l~~l-~~L 152 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSI----VMLGFL-SKL 152 (263)
T ss_dssp SSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBC----GGGGGC-TTC
T ss_pred CCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCC----hHHccC-CCC
Confidence 9999999999988764 32 333 88999999999888874 477888999999999988875 245666 889
Q ss_pred cEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 211 ALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 211 ~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+.|++++|.+++. ..+..+++ |+.|++++|
T Consensus 153 ~~L~L~~N~i~~~--~~l~~l~~-L~~L~l~~N 182 (263)
T 1xeu_A 153 EVLDLHGNEITNT--GGLTRLKK-VNWIDLTGQ 182 (263)
T ss_dssp CEEECTTSCCCBC--TTSTTCCC-CCEEEEEEE
T ss_pred CEEECCCCcCcch--HHhccCCC-CCEEeCCCC
Confidence 9999999999864 56778888 898888765
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=5.2e-17 Score=120.97 Aligned_cols=135 Identities=25% Similarity=0.237 Sum_probs=69.5
Q ss_pred CceEEEecCCCCCCCCCCCCcc-cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLR-GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 128 (243)
..++.|++++ |.+. +.+|..+..+++|++|++++|.++. + ..+..+++|++|++++|.+.+.+|..+.
T Consensus 24 ~~L~~L~l~~--------n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 24 AAVRELVLDN--------CKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp TSCSEEECCS--------CBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred ccCCEEECCC--------CCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 3455555555 2444 4455555555555555555555544 2 4455555555555555555544444444
Q ss_pred CCCCCcEEEccCCccccCC-ccccCCCCCCCEEEcCCccccCCcchH-HHhhccccccccccccccCCC
Q 044082 129 NLTNLQSLNLGYNSLYVSK-FGWLSHLNKLTQLDLDFVDLSEASDWL-QVITSLASLRDLYLASSTLPS 195 (243)
Q Consensus 129 ~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~~~~ 195 (243)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+...+.+. ..+..+++|++|++++|.+..
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 4555555555555555421 134555555555555555555543211 134455555555555555443
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=1.1e-16 Score=116.89 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=87.7
Q ss_pred CCCcEEecCCcccc-ccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccc
Q 044082 107 TKLRFLDLSLANFS-GRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD 185 (243)
Q Consensus 107 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 185 (243)
++|+.|++++|.+. +.+|..+..+++|++|++++|.++.. ..++.+++|++|++++|.+.+. ++..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG--LEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC--THHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch--HHHHhhhCCCCCE
Confidence 55666666666665 55666666667777777777766654 4566777777777777777764 1235666777888
Q ss_pred cccccccCCCCC-CCCcccccCCCCCcEEECCCCccccccc---hhHHhhhccCceeeCCC
Q 044082 186 LYLASSTLPSIN-RPSLSSMNSSTSLALLDLSSCGLSNSAY---HWLFKISSNLLALDLNS 242 (243)
Q Consensus 186 L~l~~n~~~~~~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~---~~l~~l~~~L~~L~l~~ 242 (243)
|++++|.+++.. + ..+..+ ++|+.|++++|.+++..+ ..+..+++ |++|++++
T Consensus 93 L~ls~N~i~~~~~~--~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~-L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTI--EPLKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQ-LTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHH--GGGGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTT-CCEETTBC
T ss_pred EECCCCcCCChHHH--HHHhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCC-cccccCCC
Confidence 888888776642 2 244555 888888888888886444 46788888 88888764
No 107
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.5e-16 Score=121.21 Aligned_cols=131 Identities=23% Similarity=0.239 Sum_probs=110.8
Q ss_pred EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcch-hhcCCCCCcEEecCCccccccCCcCCCCCC
Q 044082 53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPE-FIGFFTKLRFLDLSLANFSGRIPYQLGNLT 131 (243)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 131 (243)
+.+++++ +.+. .+|..+.. ++++|++++|.++.. .+. .+..+++|++|++++|.+++..|..+..++
T Consensus 11 ~~l~~s~--------~~l~-~ip~~~~~--~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 11 TTVDCTG--------RGLK-EIPRDIPL--HTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78 (192)
T ss_dssp TEEECTT--------SCCS-SCCSCCCT--TCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CEEEcCC--------CCcC-cCccCCCC--CCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcc
Confidence 5789998 4663 56665543 899999999999874 333 488999999999999999988788899999
Q ss_pred CCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCC
Q 044082 132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINR 198 (243)
Q Consensus 132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 198 (243)
+|++|++++|++++..+..+..+++|++|++++|.+++. +. .+..+++|++|++++|.+.+..+
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeCCCCccCcCc
Confidence 999999999999988888899999999999999999887 43 77888999999999999987644
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=1.9e-16 Score=140.29 Aligned_cols=149 Identities=28% Similarity=0.320 Sum_probs=129.0
Q ss_pred CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082 49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 128 (243)
..+++.|+|++ |.+.+..+ +..+++|+.|+|++|.+.. ++ .+..+++|++|++++|.+.+ + ..+.
T Consensus 64 l~~L~~L~Ls~--------N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~ 128 (605)
T 1m9s_A 64 LPNVTKLFLNG--------NKLTDIKP--LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISD-I-NGLV 128 (605)
T ss_dssp CTTCCEEECTT--------SCCCCCGG--GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCC-C-GGGG
T ss_pred CCCCCEEEeeC--------CCCCCChh--hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCC-C-cccc
Confidence 46899999999 47776544 8999999999999999987 44 68899999999999999985 3 4578
Q ss_pred CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082 129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST 208 (243)
Q Consensus 129 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 208 (243)
.+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+.+. +..+++|++|+|++|.+.+. ..+..+ +
T Consensus 129 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l----~~l~~l-~ 197 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL----RALAGL-K 197 (605)
T ss_dssp GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC----GGGTTC-T
T ss_pred CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCC----hHHccC-C
Confidence 899999999999999875 568899999999999999988842 78899999999999999875 356667 9
Q ss_pred CCcEEECCCCccccc
Q 044082 209 SLALLDLSSCGLSNS 223 (243)
Q Consensus 209 ~L~~L~L~~n~i~~~ 223 (243)
+|+.|+|++|.+++.
T Consensus 198 ~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 198 NLDVLELFSQECLNK 212 (605)
T ss_dssp TCSEEECCSEEEECC
T ss_pred CCCEEEccCCcCcCC
Confidence 999999999999864
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=1.5e-18 Score=148.99 Aligned_cols=167 Identities=22% Similarity=0.198 Sum_probs=103.0
Q ss_pred cchhhccCCCCcEEEccCCCCCCCCc----chhhcCCCCCcEEecCCcccccc----CCcCCCCCCCCcEEEccCCcccc
Q 044082 74 INSSLLELQHLNYLDLSVNDFLGNPI----PEFIGFFTKLRFLDLSLANFSGR----IPYQLGNLTNLQSLNLGYNSLYV 145 (243)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~ 145 (243)
++..+..+++|++|++++|.+..... +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.++.
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 34455556666666666665543200 11122456666666666666532 34444556667777777776654
Q ss_pred CCccccC-----CCCCCCEEEcCCccccCC--cchHHHhhccccccccccccccCCCCCCCCccccc----CCCCCcEEE
Q 044082 146 SKFGWLS-----HLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASSTLPSINRPSLSSMN----SSTSLALLD 214 (243)
Q Consensus 146 ~~~~~l~-----~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~~~~L~~L~ 214 (243)
..+..+. ..++|++|++++|.+++. ..++..+..+++|++|++++|.+++..+ ..+.. ..++|+.|+
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV--RELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH--HHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH--HHHHHHHcCCCCceEEEE
Confidence 3332222 225777777777777655 2344566677888888888887765432 22222 126889999
Q ss_pred CCCCcccc----ccchhHHhhhccCceeeCCCC
Q 044082 215 LSSCGLSN----SAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 215 L~~n~i~~----~~~~~l~~l~~~L~~L~l~~N 243 (243)
+++|.+++ .+|..+..+++ |++|++++|
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~-L~~L~l~~N 408 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHS-LRELDLSNN 408 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCC-CCEEECCSS
T ss_pred CCCCCCChhhHHHHHHHHHhCCC-ccEEECCCC
Confidence 99998886 67778888888 999998876
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.4e-16 Score=118.63 Aligned_cols=142 Identities=23% Similarity=0.182 Sum_probs=111.2
Q ss_pred ccCCCCcEEEccCCCCC-CCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 79 LELQHLNYLDLSVNDFL-GNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 79 ~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
...++|+.|++++|.++ +. +|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~-i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGK-IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTB-CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhh-HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34478999999999987 33 788888899999999999998854 677888999999999999887677767778899
Q ss_pred CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCC-cccccCCCCCcEEECCCCccccccch
Q 044082 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS-LSSMNSSTSLALLDLSSCGLSNSAYH 226 (243)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~ 226 (243)
++|++++|.+++.+. +..+..+++|++|++++|.+++.++.. ..+..+ ++|+.|++++|.+. ++|.
T Consensus 98 ~~L~Ls~N~l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 98 THLNLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-PQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CEEECBSSSCCSSGG-GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-SSCCEETTEETTSC-BCCS
T ss_pred CEEeccCCccCcchh-HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-ccCcEecCCCCChh-hccc
Confidence 999999999988752 237788889999999999888664310 134445 88999999888886 4443
No 111
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=5e-17 Score=144.33 Aligned_cols=158 Identities=19% Similarity=0.175 Sum_probs=92.4
Q ss_pred CCCCCcccceE--------EecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhc
Q 044082 33 GRKDCCKWSGV--------QCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIG 104 (243)
Q Consensus 33 ~~~~~~~~~~~--------~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 104 (243)
...++|.|.+. .|. ...++.|+++++ .++ .+|..+. ++|++|++++|.++. +|.
T Consensus 17 ~~~~~~~~~~r~~~~~~~~~c~--~~~l~~L~ls~n--------~L~-~lp~~l~--~~L~~L~L~~N~l~~--lp~--- 78 (622)
T 3g06_A 17 RAAPAEESRGRAAVVQKMRACL--NNGNAVLNVGES--------GLT-TLPDCLP--AHITTLVIPDNNLTS--LPA--- 78 (622)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHH--HHCCCEEECCSS--------CCS-CCCSCCC--TTCSEEEECSCCCSC--CCC---
T ss_pred hcCCcchhccccccCccccccc--CCCCcEEEecCC--------CcC-ccChhhC--CCCcEEEecCCCCCC--CCC---
Confidence 56778888553 232 135788888884 555 4555444 677777777777765 454
Q ss_pred CCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccc
Q 044082 105 FFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLR 184 (243)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 184 (243)
.+++|++|++++|.++ .+|. .+++|++|++++|.++.. |. .+++|+.|++++|.++.+|. .+++|+
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~------~l~~L~ 144 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV------LPPGLQ 144 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC------CCTTCC
T ss_pred cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC------CCCCCC
Confidence 4567777777777776 4444 456677777777766643 22 34556666666666655543 124555
Q ss_pred ccccccccCCCCCCCCcccc-------------cCCCCCcEEECCCCcccc
Q 044082 185 DLYLASSTLPSINRPSLSSM-------------NSSTSLALLDLSSCGLSN 222 (243)
Q Consensus 185 ~L~l~~n~~~~~~~~~~~~~-------------~~~~~L~~L~L~~n~i~~ 222 (243)
+|++++|.+++++.....+. ..+++|+.|++++|.+++
T Consensus 145 ~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 145 ELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred EEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC
Confidence 55555555554321000000 112667777777777764
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=1.2e-16 Score=116.65 Aligned_cols=117 Identities=25% Similarity=0.253 Sum_probs=53.4
Q ss_pred Ccc-cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC-
Q 044082 69 PLR-GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS- 146 (243)
Q Consensus 69 ~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~- 146 (243)
.+. +.+|..+..+++|++|++++|.++. + ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.
T Consensus 28 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~ 104 (149)
T 2je0_A 28 RSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104 (149)
T ss_dssp BCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHH
T ss_pred cCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChH
Confidence 444 3444444555555555555555444 2 3444455555555555555433444343444555555555554432
Q ss_pred CccccCCCCCCCEEEcCCccccCCcchH-HHhhcccccccccc
Q 044082 147 KFGWLSHLNKLTQLDLDFVDLSEASDWL-QVITSLASLRDLYL 188 (243)
Q Consensus 147 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l 188 (243)
.+..+..+++|++|++++|.+++.+.+. ..+..+++|++|++
T Consensus 105 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 105 TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 1233444445555555555444442110 13344444444444
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=8e-16 Score=117.14 Aligned_cols=125 Identities=26% Similarity=0.256 Sum_probs=109.0
Q ss_pred cccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccch-hhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082 38 CKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINS-SLLELQHLNYLDLSVNDFLGNPIPEFIGFFT 107 (243)
Q Consensus 38 ~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 107 (243)
|.|..+.|.... ..++.|++++ |.+.+..+. .+..+++|++|++++|.+++. .|..+..++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~--------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~ 78 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLND--------NELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGAS 78 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCS--------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCT
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCC--------CcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcc
Confidence 467777775422 4789999999 577765554 489999999999999999986 788999999
Q ss_pred CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCc
Q 044082 108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEAS 171 (243)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 171 (243)
+|++|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+....
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 9999999999999877778999999999999999999988999999999999999999998773
No 114
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=1.6e-15 Score=113.87 Aligned_cols=111 Identities=24% Similarity=0.266 Sum_probs=59.3
Q ss_pred CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082 82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD 161 (243)
Q Consensus 82 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 161 (243)
++|+.|++++|.++.. .+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 4566666666666553 334455566666666666666533333445555566666666655544444445555555555
Q ss_pred cCCccccCCcchHHHhhccccccccccccccCCC
Q 044082 162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195 (243)
Q Consensus 162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 195 (243)
+++|.++..+. ..+..+++|++|++++|.+.+
T Consensus 107 l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 107 LDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCcceEeCH--HHhcCCcccCEEEecCCCeec
Confidence 55555554432 123444455555555554443
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=7.7e-16 Score=135.31 Aligned_cols=145 Identities=18% Similarity=0.131 Sum_probs=112.2
Q ss_pred CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC
Q 044082 68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK 147 (243)
Q Consensus 68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 147 (243)
|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +
T Consensus 110 N~l~~-ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 110 NRLST-LPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp SCCSC-CCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCCCC-cch-hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence 56665 555 544 78888888888877 555 67889999999999884 665 57899999999999987 5
Q ss_pred ccccCCCCCCCEEEcCCccccCCcchHHHh-hccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccch
Q 044082 148 FGWLSHLNKLTQLDLDFVDLSEASDWLQVI-TSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYH 226 (243)
Q Consensus 148 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 226 (243)
|. +. ++|++|++++|.++.+|.+...+ .....|+.|++++|.++.++ ..+..+ ++|+.|++++|.+++.+|.
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp---~~l~~l-~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP---ENILSL-DPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCC---GGGGGS-CTTEEEECCSSSCCHHHHH
T ss_pred ch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecC---HHHhcC-CCCCEEEeeCCcCCCcCHH
Confidence 65 65 89999999999999886522211 11123399999999999754 466776 9999999999999999999
Q ss_pred hHHhhhc
Q 044082 227 WLFKISS 233 (243)
Q Consensus 227 ~l~~l~~ 233 (243)
.+..+..
T Consensus 249 ~l~~l~~ 255 (571)
T 3cvr_A 249 SLSQQTA 255 (571)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9888754
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=1.3e-16 Score=144.47 Aligned_cols=113 Identities=24% Similarity=0.159 Sum_probs=51.7
Q ss_pred hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082 76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN 155 (243)
Q Consensus 76 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 155 (243)
..+..++.|+.|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..++.++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 344444445555555554442 3444444444555555555444 44444444445555555555444 3344444444
Q ss_pred CCCEEEcCCccccCCcchHHHhhccccccccccccccCCC
Q 044082 156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195 (243)
Q Consensus 156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 195 (243)
+|++|++++|.+..+|. .+..+++|++|+|++|.+++
T Consensus 294 ~L~~L~L~~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPW---EFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TCSEEECCSSCCCCCCS---STTSCTTCCCEECTTSCCCS
T ss_pred CCCEEECCCCCCCccCh---hhhcCCCccEEeCCCCccCC
Confidence 45555555554444433 34444445555555544443
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.66 E-value=1.3e-15 Score=130.85 Aligned_cols=137 Identities=23% Similarity=0.204 Sum_probs=84.4
Q ss_pred CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082 82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD 161 (243)
Q Consensus 82 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 161 (243)
++|++|++++|.+++ +| .++.+++|++|++++|.+.+ +|..+ ++|++|++++|.+++ +| .++.+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 456666666666654 44 36666666666666666663 44332 366666777666665 34 366677777777
Q ss_pred cCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCC
Q 044082 162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN 241 (243)
Q Consensus 162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~ 241 (243)
+++|.+.+.+.. ..+|++|++++|.+..+ + .+..+ ++|+.|++++|++++ +|.. .++ |++|+++
T Consensus 202 l~~N~l~~l~~~------~~~L~~L~l~~n~l~~l-p---~~~~l-~~L~~L~l~~N~l~~-l~~~---~~~-L~~L~l~ 265 (454)
T 1jl5_A 202 ADNNSLKKLPDL------PLSLESIVAGNNILEEL-P---ELQNL-PFLTTIYADNNLLKT-LPDL---PPS-LEALNVR 265 (454)
T ss_dssp CCSSCCSSCCCC------CTTCCEEECCSSCCSSC-C---CCTTC-TTCCEEECCSSCCSS-CCSC---CTT-CCEEECC
T ss_pred CCCCcCCcCCCC------cCcccEEECcCCcCCcc-c---ccCCC-CCCCEEECCCCcCCc-cccc---ccc-cCEEECC
Confidence 777777666431 13677777777777633 2 34555 778888888887774 4432 234 6666666
Q ss_pred CC
Q 044082 242 SN 243 (243)
Q Consensus 242 ~N 243 (243)
+|
T Consensus 266 ~N 267 (454)
T 1jl5_A 266 DN 267 (454)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=2e-15 Score=129.73 Aligned_cols=111 Identities=21% Similarity=0.277 Sum_probs=76.7
Q ss_pred CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC
Q 044082 68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK 147 (243)
Q Consensus 68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 147 (243)
|.+++ +| .++++++|++|++++|.+++ +|..+ .+|++|++++|.+.+ +| .++.+++|++|++++|.+++ +
T Consensus 141 n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 141 NQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L 210 (454)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred CCCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence 57775 66 58999999999999999886 55433 578888888888874 55 57778888888888887765 2
Q ss_pred ccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCC
Q 044082 148 FGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195 (243)
Q Consensus 148 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 195 (243)
|.. ..+|++|++++|.+...|+ +..+++|++|++++|.+++
T Consensus 211 ~~~---~~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 211 PDL---PLSLESIVAGNNILEELPE----LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCSS
T ss_pred CCC---cCcccEEECcCCcCCcccc----cCCCCCCCEEECCCCcCCc
Confidence 321 1356666666666664442 4456666666666666654
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.3e-15 Score=116.10 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=109.6
Q ss_pred EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082 53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132 (243)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 132 (243)
+.+++++ +.+. .+|..+. ++|++|++++|.++. +|..+..+++|++|++++|.+++..+..+..+++
T Consensus 13 ~~l~~~~--------~~l~-~ip~~~~--~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 13 TVVRCSN--------KGLK-VLPKGIP--RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79 (193)
T ss_dssp TEEECTT--------SCCS-SCCSCCC--TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEcCC--------CCCC-cCCCCCC--CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence 4688888 4655 4565443 689999999999986 7789999999999999999999777778999999
Q ss_pred CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCC
Q 044082 133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSI 196 (243)
Q Consensus 133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 196 (243)
|++|++++|+++...+..+..+++|++|++++|.++..+. ..+..+++|++|++++|.+...
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh--hhhhcCccccEEEeCCCCeecC
Confidence 9999999999998888889999999999999999998853 3677889999999999988754
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=1.3e-17 Score=143.15 Aligned_cols=157 Identities=24% Similarity=0.146 Sum_probs=68.4
Q ss_pred CCcEEEccCCCCCCC---CcchhhcCCCCCcEEecCCccccccCCcC-----CCCCCCCcEEEccCCccccCC----ccc
Q 044082 83 HLNYLDLSVNDFLGN---PIPEFIGFFTKLRFLDLSLANFSGRIPYQ-----LGNLTNLQSLNLGYNSLYVSK----FGW 150 (243)
Q Consensus 83 ~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~----~~~ 150 (243)
+|++|++++|.++.. .++..+..+++|++|++++|.+.+..+.. ....++|++|++++|.++... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 355555555554421 03444455555555555555544222211 112334555555555544322 222
Q ss_pred cCCCCCCCEEEcCCccccCCc--chHHHhh-ccccccccccccccCCCCC----CCCcccccCCCCCcEEECCCCccccc
Q 044082 151 LSHLNKLTQLDLDFVDLSEAS--DWLQVIT-SLASLRDLYLASSTLPSIN----RPSLSSMNSSTSLALLDLSSCGLSNS 223 (243)
Q Consensus 151 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~-~l~~L~~L~l~~n~~~~~~----~~~~~~~~~~~~L~~L~L~~n~i~~~ 223 (243)
+..+++|++|++++|.+.+.. .+...+. ..++|++|++++|.++... + ..+..+ ++|++|++++|.+++.
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~--~~l~~~-~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC--GIVASK-ASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH--HHHHHC-TTCCEEECCSSBCHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH--HHHHhC-CCccEEeccCCcCChH
Confidence 333455555555555554331 1111111 1235555555555554321 1 122333 5566666666665543
Q ss_pred cchhHH-----hhhccCceeeCCCC
Q 044082 224 AYHWLF-----KISSNLLALDLNSN 243 (243)
Q Consensus 224 ~~~~l~-----~l~~~L~~L~l~~N 243 (243)
....+. .+++ |++|++++|
T Consensus 243 ~~~~l~~~~~~~~~~-L~~L~L~~n 266 (461)
T 1z7x_W 243 GMAELCPGLLHPSSR-LRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHTSTTCC-CCEEECTTS
T ss_pred HHHHHHHHHhcCCCC-ceEEECcCC
Confidence 222222 2344 666666554
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.2e-15 Score=114.81 Aligned_cols=123 Identities=26% Similarity=0.269 Sum_probs=98.9
Q ss_pred cccceEEecCC---------CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCC
Q 044082 38 CKWSGVQCSNR---------TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTK 108 (243)
Q Consensus 38 ~~~~~~~c~~~---------~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 108 (243)
|.|..+.|... ...++.|++++ |.++ .+|..+.++++|++|++++|.++.. .+..|..+++
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~--------n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~ 79 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDG--------NQFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQ 79 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCS--------SCCC-SCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTT
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCC--------CcCc-hhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCC
Confidence 34566666432 24688888888 4666 5677888999999999999999886 6677888999
Q ss_pred CcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCC
Q 044082 109 LRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA 170 (243)
Q Consensus 109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 170 (243)
|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.-.
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999999999876667788889999999999998876666788888999999999988655
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=3.8e-15 Score=132.27 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=49.9
Q ss_pred CCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhcc
Q 044082 155 NKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSN 234 (243)
Q Consensus 155 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~ 234 (243)
++|++|++++|.++.++ ..+++|+.|++++|.++.++. .. ++|+.|++++|.|+ .+|..+.++++
T Consensus 221 ~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~~lp~------~~-~~L~~L~Ls~N~L~-~lp~~l~~l~~- 285 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLTSLPM------LP-SGLLSLSVYRNQLT-RLPESLIHLSS- 285 (622)
T ss_dssp TTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC------CC-TTCCEEECCSSCCC-SCCGGGGGSCT-
T ss_pred CCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCCcCCc------cc-ccCcEEeCCCCCCC-cCCHHHhhccc-
Confidence 34455555555554443 233556666666666654321 23 78999999999998 78888999988
Q ss_pred CceeeCCCC
Q 044082 235 LLALDLNSN 243 (243)
Q Consensus 235 L~~L~l~~N 243 (243)
|+.|++++|
T Consensus 286 L~~L~L~~N 294 (622)
T 3g06_A 286 ETTVNLEGN 294 (622)
T ss_dssp TCEEECCSC
T ss_pred cCEEEecCC
Confidence 999999887
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=3.9e-15 Score=111.70 Aligned_cols=125 Identities=22% Similarity=0.231 Sum_probs=106.8
Q ss_pred CcccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082 37 CCKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT 107 (243)
Q Consensus 37 ~~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 107 (243)
.|.|.++.|.... ..++.|++++ |.+.+..+..+.++++|++|++++|.++.. .+..+..++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 76 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELES--------NKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLT 76 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCS--------SCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCT
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCC--------CcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCC
Confidence 3578888886422 5789999999 588876666789999999999999999885 566678999
Q ss_pred CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCC
Q 044082 108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA 170 (243)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 170 (243)
+|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+...
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 999999999999966666688999999999999999977666678899999999999999877
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=5.4e-16 Score=116.41 Aligned_cols=137 Identities=20% Similarity=0.168 Sum_probs=94.3
Q ss_pred hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCC
Q 044082 77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNK 156 (243)
Q Consensus 77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 156 (243)
.+.++.+|+.|++++|.++. ++......++|++|++++|.+.+. ..++.+++|++|++++|.++...+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35567778888888887775 444333334788888888877743 56777788888888888877654444577778
Q ss_pred CCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCc---ccccCCCCCcEEECCCCccc
Q 044082 157 LTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSL---SSMNSSTSLALLDLSSCGLS 221 (243)
Q Consensus 157 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~~~~~L~~L~L~~n~i~ 221 (243)
|++|++++|.+...+. ...+..+++|++|++++|.+...+. . .+..+ ++|+.|+++.|.+.
T Consensus 90 L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~~~~~--~~~~~~~~l-~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNKKH--YRLYVIYKV-PQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGSTT--HHHHHHHHC-TTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCCCcHh--HHHHHHHHC-CccceeCCCcCCHH
Confidence 8888888888866643 1256677788888888887775533 1 24455 78888888877765
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=2.6e-15 Score=112.68 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=108.4
Q ss_pred hhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccc
Q 044082 102 FIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA 181 (243)
Q Consensus 102 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 181 (243)
.+..+.+|++|++++|.+. .++......++|++|++++|.+++. ..+..+++|++|++++|.+...+. ..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE--GLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS--CHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc--chhhcCC
Confidence 3567889999999999999 4554333345999999999999865 568899999999999999998853 2458899
Q ss_pred cccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchh----HHhhhccCceeeCCCC
Q 044082 182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHW----LFKISSNLLALDLNSN 243 (243)
Q Consensus 182 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~----l~~l~~~L~~L~l~~N 243 (243)
+|++|++++|.+...+.. ..+..+ ++|+.|++++|.++ .+|.. +..+++ |+.||+++|
T Consensus 89 ~L~~L~L~~N~i~~~~~~-~~l~~l-~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~-L~~Ld~~~n 150 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDL-DPLASL-KSLTYLCILRNPVT-NKKHYRLYVIYKVPQ-VRVLDFQKV 150 (176)
T ss_dssp TCCEEECCSCCCCCGGGG-GGGGGC-TTCCEEECCSSGGG-GSTTHHHHHHHHCTT-CSEETTEEC
T ss_pred CCCEEECCCCcCCcchhh-HhhhcC-CCCCEEEecCCCCC-CcHhHHHHHHHHCCc-cceeCCCcC
Confidence 999999999999765320 245566 99999999999998 56664 889999 999999875
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=1.5e-17 Score=127.36 Aligned_cols=113 Identities=23% Similarity=0.252 Sum_probs=55.4
Q ss_pred hhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccc
Q 044082 102 FIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA 181 (243)
Q Consensus 102 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 181 (243)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+ .+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~----~~~~l~ 115 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS----GIEKLV 115 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH----HHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC----ccccCC
Confidence 45555555555555555542 33 4444555555555555554 23333344455555555555555432 344555
Q ss_pred cccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccc
Q 044082 182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS 223 (243)
Q Consensus 182 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 223 (243)
+|++|++++|.++..... ..+..+ ++|+.|++++|.+++.
T Consensus 116 ~L~~L~l~~N~i~~~~~~-~~l~~l-~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEI-DKLAAL-DKLEDLLLAGNPLYND 155 (198)
T ss_dssp HSSEEEESEEECCCHHHH-HHHTTT-TTCSEEEECSCHHHHH
T ss_pred CCCEEECCCCcCCchhHH-HHHhcC-CCCCEEEecCCccccc
Confidence 555555555555432210 123333 5555666665555543
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=1.4e-14 Score=127.63 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=126.7
Q ss_pred cccccchhhccCCCCcEEE-ccCCCCCCCCcch------hhcC--CCCCcEEecCCccccccCCcCCCCCCCCcEEEccC
Q 044082 70 LRGNINSSLLELQHLNYLD-LSVNDFLGNPIPE------FIGF--FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140 (243)
Q Consensus 70 ~~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 140 (243)
+.+..|..++++++|+.|+ ++.|.+.. ++. .+.. ...|+.|++++|.+++ +|. ++.+++|++|++++
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~--L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~ 472 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAAYLDD--LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSH 472 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCS
T ss_pred cccCCHHHHHHHHhcccCcchhhcccch--hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCc
Confidence 4566777888999999998 56654322 111 1111 1358999999999994 676 88999999999999
Q ss_pred CccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCC-CCCcccccCCCCCcEEECCCCc
Q 044082 141 NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSIN-RPSLSSMNSSTSLALLDLSSCG 219 (243)
Q Consensus 141 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~~~L~~L~L~~n~ 219 (243)
|.++ .+|..++.+++|+.|++++|.++++| .+..+++|+.|++++|.+++.. | ..+..+ ++|+.|++++|.
T Consensus 473 N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp----~l~~l~~L~~L~Ls~N~l~~~~~p--~~l~~l-~~L~~L~L~~N~ 544 (567)
T 1dce_A 473 NRLR-ALPPALAALRCLEVLQASDNALENVD----GVANLPRLQELLLCNNRLQQSAAI--QPLVSC-PRLVLLNLQGNS 544 (567)
T ss_dssp SCCC-CCCGGGGGCTTCCEEECCSSCCCCCG----GGTTCSSCCEEECCSSCCCSSSTT--GGGGGC-TTCCEEECTTSG
T ss_pred cccc-ccchhhhcCCCCCEEECCCCCCCCCc----ccCCCCCCcEEECCCCCCCCCCCc--HHHhcC-CCCCEEEecCCc
Confidence 9998 67888999999999999999999875 6788999999999999999986 6 677788 999999999999
Q ss_pred cccccch---hHHhhhccCceeeC
Q 044082 220 LSNSAYH---WLFKISSNLLALDL 240 (243)
Q Consensus 220 i~~~~~~---~l~~l~~~L~~L~l 240 (243)
+++..|. .+..+++ |+.|++
T Consensus 545 l~~~~~~~~~l~~~lp~-L~~L~l 567 (567)
T 1dce_A 545 LCQEEGIQERLAEMLPS-VSSILT 567 (567)
T ss_dssp GGGSSSCTTHHHHHCTT-CSEEEC
T ss_pred CCCCccHHHHHHHHCcc-cCccCC
Confidence 9975432 3444777 998874
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.9e-14 Score=126.66 Aligned_cols=126 Identities=21% Similarity=0.160 Sum_probs=97.0
Q ss_pred CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEc
Q 044082 83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL 162 (243)
Q Consensus 83 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 162 (243)
.|+.|++++|.++. +|. ++.+++|++|++++|.+. .+|..++.+++|++|++++|.+++ +| .++.+++|++|++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 47888888888877 565 888888888888888888 778888888888888888888886 45 6888888888888
Q ss_pred CCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEEC
Q 044082 163 DFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDL 215 (243)
Q Consensus 163 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L 215 (243)
++|.+++.+. +..+..+++|+.|++++|.+++.++....+...+++|+.|++
T Consensus 516 s~N~l~~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSST-TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCC-cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888887720 237788888888888888888776522233333488888764
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=8.6e-18 Score=128.68 Aligned_cols=154 Identities=21% Similarity=0.221 Sum_probs=122.6
Q ss_pred ceEEEecCCCCCCCCCCCCcccccch------hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCC
Q 044082 51 HVIMLNLKYKVDPVCPNRPLRGNINS------SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP 124 (243)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 124 (243)
.++.++++. +.+.+.+|. .+..+++|++|++++|.++. +| .+..+++|++|++++|.+. .+|
T Consensus 19 ~l~~l~l~~--------~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~ 86 (198)
T 1ds9_A 19 SVVATEAEK--------VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIE 86 (198)
T ss_dssp CCCCTTCSE--------EECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCS
T ss_pred cccCcchhe--------eEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-ccc
Confidence 455555555 355555554 89999999999999999988 56 8889999999999999999 677
Q ss_pred cCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCC----
Q 044082 125 YQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS---- 200 (243)
Q Consensus 125 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---- 200 (243)
..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+...+. ...+..+++|++|++++|.+.+..+..
T Consensus 87 ~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 87 NLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp SHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred chhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCccccccccccchH
Confidence 777777999999999999986 34 57888999999999999988753 247889999999999999987654300
Q ss_pred ----cccccCCCCCcEEECCCCcccc
Q 044082 201 ----LSSMNSSTSLALLDLSSCGLSN 222 (243)
Q Consensus 201 ----~~~~~~~~~L~~L~L~~n~i~~ 222 (243)
..+..+ ++|+.|| ++.++.
T Consensus 164 ~~~~~~~~~l-~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 164 EYRIEVVKRL-PNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHHHC-SSCSEEC--CGGGTT
T ss_pred HHHHHHHHhC-CCcEEEC--CcccCH
Confidence 114555 8999887 677764
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1e-14 Score=121.13 Aligned_cols=182 Identities=16% Similarity=0.039 Sum_probs=109.4
Q ss_pred CCceEEEecCCCCCCC------------------CCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCc
Q 044082 49 TGHVIMLNLKYKVDPV------------------CPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLR 110 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~~------------------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 110 (243)
..+++.|+|++|.+.. ...|.+....|..+.++++|++|++++|.+... .+..+....++.
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~l~ 131 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKV 131 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC-CCCTTCCBSSCE
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccC-Cchhhcccchhh
Confidence 3688999999963300 001222222233344444445555544444442 222233333444
Q ss_pred EEecCC-ccccccCCcCCCCC-CCCcEEEccCCccccCCccccCCCCCCCEEEcCC-ccccCCcchHHHhhccccccccc
Q 044082 111 FLDLSL-ANFSGRIPYQLGNL-TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDF-VDLSEASDWLQVITSLASLRDLY 187 (243)
Q Consensus 111 ~L~l~~-~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~ 187 (243)
.+++.. +.+....+..+..+ ..++.|++++|.++...+. .....+|+.+++.+ |.+..++. ..+..+++|++|+
T Consensus 132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~--~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPN--DVFHGASGPVILD 208 (350)
T ss_dssp EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCT--TTTTTEECCSEEE
T ss_pred hhhhccccccccccccchhhcchhhhhhccccccccCCChh-hccccchhHHhhccCCcccCCCH--HHhccCcccchhh
Confidence 444432 23332222334444 3588899999998854444 44557899999974 77888864 3688999999999
Q ss_pred cccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCC
Q 044082 188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNS 242 (243)
Q Consensus 188 l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~ 242 (243)
+++|+++.++. .. +.+|+.|.+.++.--..+|. +.++++ |+.+++.+
T Consensus 209 Ls~N~l~~lp~--~~----~~~L~~L~~l~~~~l~~lP~-l~~l~~-L~~l~l~~ 255 (350)
T 4ay9_X 209 ISRTRIHSLPS--YG----LENLKKLRARSTYNLKKLPT-LEKLVA-LMEASLTY 255 (350)
T ss_dssp CTTSCCCCCCS--SS----CTTCCEEECTTCTTCCCCCC-TTTCCS-CCEEECSC
T ss_pred cCCCCcCccCh--hh----hccchHhhhccCCCcCcCCC-chhCcC-hhhCcCCC
Confidence 99999998765 22 26677777655543336664 778888 99998865
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.8e-13 Score=102.01 Aligned_cols=107 Identities=21% Similarity=0.150 Sum_probs=92.1
Q ss_pred EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082 53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132 (243)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 132 (243)
+.+++++ |.++. +|..+. ++|++|++++|.++.. .|..+..+++|++|++++|.+.+..+..+..+++
T Consensus 12 ~~l~~s~--------n~l~~-ip~~~~--~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 12 TTVDCSG--------KSLAS-VPTGIP--TTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TEEECTT--------SCCSS-CCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEeCC--------CCcCc-cCccCC--CCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence 5799999 46664 665553 8899999999999986 6888999999999999999999666666789999
Q ss_pred CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCc
Q 044082 133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEAS 171 (243)
Q Consensus 133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 171 (243)
|++|++++|++++..+..+..+++|++|++++|.+....
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999999999999877777999999999999999998663
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=3.2e-13 Score=100.70 Aligned_cols=108 Identities=26% Similarity=0.260 Sum_probs=90.6
Q ss_pred CcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcC
Q 044082 84 LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163 (243)
Q Consensus 84 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 163 (243)
.+.+++++|.++. +|..+ .++|++|++++|.+++..|..+..+++|++|++++|+++...+..+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4688999999887 66655 3789999999999997777888899999999999999987777778889999999999
Q ss_pred CccccCCcchHHHhhccccccccccccccCCCCC
Q 044082 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSIN 197 (243)
Q Consensus 164 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 197 (243)
+|.++..+. ..+..+++|++|++++|.+....
T Consensus 87 ~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPR--GAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCT--TTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCH--HHhcCCCCCCEEEeCCCCCCCCc
Confidence 999988853 36788899999999999887654
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=5e-13 Score=100.01 Aligned_cols=107 Identities=25% Similarity=0.259 Sum_probs=82.6
Q ss_pred cEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCC
Q 044082 85 NYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDF 164 (243)
Q Consensus 85 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 164 (243)
+.++++++.++. +|..+. ++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 678888888866 666553 7788888888888866677788888888888888888876666667888888888888
Q ss_pred ccccCCcchHHHhhccccccccccccccCCCCC
Q 044082 165 VDLSEASDWLQVITSLASLRDLYLASSTLPSIN 197 (243)
Q Consensus 165 n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 197 (243)
|.+...+. ..+..+++|++|++++|.+....
T Consensus 91 N~l~~l~~--~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPR--GAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCT--TTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCH--HHhccccCCCEEEeCCCCccccc
Confidence 88887753 24777888888888888877543
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=9.8e-13 Score=98.41 Aligned_cols=107 Identities=19% Similarity=0.158 Sum_probs=92.3
Q ss_pred EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082 53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132 (243)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 132 (243)
+.+++++ +.+. .+|..+. ++|++|++++|.++.. .|..+..+++|++|++++|.+.+..+..+..+++
T Consensus 15 ~~l~~~~--------n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQN--------IRLA-SVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCS--------SCCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCC--------CCCC-ccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 5689998 4654 5666554 8899999999999986 7888999999999999999999655556789999
Q ss_pred CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCc
Q 044082 133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEAS 171 (243)
Q Consensus 133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 171 (243)
|++|++++|+++...+..+..+++|++|++++|.+...+
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999999999999776667999999999999999998774
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=8.5e-16 Score=128.66 Aligned_cols=174 Identities=18% Similarity=0.165 Sum_probs=122.8
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhccC-----CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCC
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLEL-----QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP 124 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 124 (243)
..++.|+|++| .++......++.+ ++|+.|++++|.++..........+++|++|++++|.+.+...
T Consensus 72 ~~L~~L~Ls~n--------~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~ 143 (372)
T 3un9_A 72 SSLRQLNLAGV--------RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC 143 (372)
T ss_dssp TTCCEEECTTS--------CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred hhCCEEEecCC--------CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence 56889999994 7765444444333 6899999999998654222333456789999999998875443
Q ss_pred cCC-----CCCCCCcEEEccCCccccCC----ccccCCCCCCCEEEcCCccccCC--cchHHHhhccccccccccccccC
Q 044082 125 YQL-----GNLTNLQSLNLGYNSLYVSK----FGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASSTL 193 (243)
Q Consensus 125 ~~l-----~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~ 193 (243)
..+ ...+.|++|++++|.++... +..+...++|++|++++|.+.+. ..++..+...++|++|++++|.+
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 333 34678999999999987532 33446778899999999998765 23455677788999999999988
Q ss_pred CCCCC--CCcccccCCCCCcEEECCCCccccccchhHHhhh
Q 044082 194 PSINR--PSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS 232 (243)
Q Consensus 194 ~~~~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~ 232 (243)
+.... ....+... ++|++|+|++|.|++.....+....
T Consensus 224 ~~~g~~~l~~~L~~~-~~L~~L~Ls~N~i~~~g~~~L~~~~ 263 (372)
T 3un9_A 224 GDTAALALARAAREH-PSLELLHLYFNELSSEGRQVLRDLG 263 (372)
T ss_dssp CHHHHHHHHHHHHHC-SSCCEEECTTSSCCHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhC-CCCCEEeccCCCCCHHHHHHHHHHh
Confidence 75322 00122344 8899999999999876666666543
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=3.5e-15 Score=124.93 Aligned_cols=160 Identities=19% Similarity=0.094 Sum_probs=118.7
Q ss_pred CCCCcEEEccCCCCCCCCcchhhcC-----CCCCcEEecCCccccccCCcCC-CCCCCCcEEEccCCccccCCcccc---
Q 044082 81 LQHLNYLDLSVNDFLGNPIPEFIGF-----FTKLRFLDLSLANFSGRIPYQL-GNLTNLQSLNLGYNSLYVSKFGWL--- 151 (243)
Q Consensus 81 l~~L~~L~l~~n~l~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l--- 151 (243)
++.|+.|++++|.++.. ....+.. .++|++|++++|.+.+.....+ ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPV-KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHH-HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHH-HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 46799999999998764 3333332 3689999999999875444333 245789999999999976544443
Q ss_pred --CCCCCCCEEEcCCccccCC--cchHHHhhccccccccccccccCCCCCC--CCcccccCCCCCcEEECCCCcccccc-
Q 044082 152 --SHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASSTLPSINR--PSLSSMNSSTSLALLDLSSCGLSNSA- 224 (243)
Q Consensus 152 --~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~L~~L~L~~n~i~~~~- 224 (243)
...++|++|++++|.+++. ..++..+...++|++|+|++|.+..... ....+... ++|+.|+|++|.|++..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC-SCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC-CCcCeEECCCCCCCHHHH
Confidence 3467899999999999765 3345567888999999999999875321 00234455 79999999999998643
Q ss_pred ---chhHHhhhccCceeeCCCC
Q 044082 225 ---YHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 225 ---~~~l~~l~~~L~~L~l~~N 243 (243)
+..+...+. |++|++++|
T Consensus 229 ~~l~~~L~~~~~-L~~L~Ls~N 249 (372)
T 3un9_A 229 LALARAAREHPS-LELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHCSS-CCEEECTTS
T ss_pred HHHHHHHHhCCC-CCEEeccCC
Confidence 344556678 999999987
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=8.3e-13 Score=108.64 Aligned_cols=182 Identities=12% Similarity=0.037 Sum_probs=120.2
Q ss_pred CCceEEEecCCCCCC--CCCCCCccc---------ccc-hhhcc--------CCCCcEEEccCCCCCCCCcchhhcCCCC
Q 044082 49 TGHVIMLNLKYKVDP--VCPNRPLRG---------NIN-SSLLE--------LQHLNYLDLSVNDFLGNPIPEFIGFFTK 108 (243)
Q Consensus 49 ~~~l~~L~l~~~~~~--~~~~~~~~~---------~~~-~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 108 (243)
.++++.|||++|.+. ......+.. .+| ..|.+ +++|+.+++.. .++.. .+..|..+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I-~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNI-EDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEE-CTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccch-hHHHhhcCcc
Confidence 356888999886442 000000000 222 35666 88899999888 66664 4567888899
Q ss_pred CcEEecCCccccccCCcCCC------------------------------------------------------------
Q 044082 109 LRFLDLSLANFSGRIPYQLG------------------------------------------------------------ 128 (243)
Q Consensus 109 L~~L~l~~~~~~~~~~~~l~------------------------------------------------------------ 128 (243)
|+++++..|.+....+..|.
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 99999988765311111111
Q ss_pred ------------------CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccc-ccccc
Q 044082 129 ------------------NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLR-DLYLA 189 (243)
Q Consensus 129 ------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~ 189 (243)
.+++|+.+++++|.++......|..+.+|+.+++..| +..++. ..+..+.+|+ .+.+.
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~--~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ--RVFSNCGRLAGTLELP 282 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCEEEEEC
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH--HHhhCChhccEEEEEc
Confidence 1567888888887777666677888888888888776 666643 3677888888 88887
Q ss_pred cccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeC
Q 044082 190 SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDL 240 (243)
Q Consensus 190 ~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l 240 (243)
+ .++.+.. ..+..+ ++|+.++++.|.++...+..|.++++ |++++.
T Consensus 283 ~-~l~~I~~--~aF~~c-~~L~~l~l~~n~i~~I~~~aF~~~~~-L~~ly~ 328 (329)
T 3sb4_A 283 A-SVTAIEF--GAFMGC-DNLRYVLATGDKITTLGDELFGNGVP-SKLIYK 328 (329)
T ss_dssp T-TCCEECT--TTTTTC-TTEEEEEECSSCCCEECTTTTCTTCC-CCEEEC
T ss_pred c-cceEEch--hhhhCC-ccCCEEEeCCCccCccchhhhcCCcc-hhhhcc
Confidence 7 5665555 566666 88888888888887555557777777 877753
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.37 E-value=6.2e-14 Score=123.85 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=42.7
Q ss_pred CCCCCcEEecCCccccccC----CcCCCCCCCCcEEEccCCcccc----CCccccCCCCCCCEEEcCCccccCCcchHHH
Q 044082 105 FFTKLRFLDLSLANFSGRI----PYQLGNLTNLQSLNLGYNSLYV----SKFGWLSHLNKLTQLDLDFVDLSEASDWLQV 176 (243)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 176 (243)
.+++|++|++++|.+.+.. +..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+.+.+. .
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~---~ 238 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG---F 238 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH---H
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH---H
Confidence 4556666666666554331 1122345566666666665542 122233445666666666665555432 4
Q ss_pred hhccccccccccc
Q 044082 177 ITSLASLRDLYLA 189 (243)
Q Consensus 177 ~~~l~~L~~L~l~ 189 (243)
+..+++|++|+++
T Consensus 239 ~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 239 FKAAANLEEFCGG 251 (592)
T ss_dssp HHHCTTCCEEEEC
T ss_pred HhhhhHHHhhccc
Confidence 5555556655554
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=8.1e-12 Score=103.33 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=86.7
Q ss_pred CcccccchhhccCCCCcEEEccC-CCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC
Q 044082 69 PLRGNINSSLLELQHLNYLDLSV-NDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK 147 (243)
Q Consensus 69 ~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 147 (243)
.++. +|. +..+++|+.|+|++ |.++.. .+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|++++..
T Consensus 20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 20 ALDS-LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CCTT-TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCc-cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 5664 777 99999999999996 999885 6678999999999999999999888888999999999999999999776
Q ss_pred ccccCCCCCCCEEEcCCccccCCc
Q 044082 148 FGWLSHLNKLTQLDLDFVDLSEAS 171 (243)
Q Consensus 148 ~~~l~~l~~L~~L~l~~n~l~~~~ 171 (243)
+..+..+. |+.|++.+|.+....
T Consensus 97 ~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 97 WKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp STTTCSCC-CCEEECCSSCCCCCG
T ss_pred HHHcccCC-ceEEEeeCCCccCCC
Confidence 66666665 999999999998764
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=8.7e-13 Score=108.53 Aligned_cols=175 Identities=16% Similarity=0.096 Sum_probs=113.7
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhcc-CCCCcEEEccCCCCCC------C------------C-cchhhcC----
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLE-LQHLNYLDLSVNDFLG------N------------P-IPEFIGF---- 105 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~------~------------~-~~~~~~~---- 105 (243)
.+++.|.+++ .+...-...+.. +++|+.|||++|.+.. . . .+..|.+
T Consensus 25 ~~l~~L~l~g---------~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 25 NSITHLTLTG---------KLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNG 95 (329)
T ss_dssp HHCSEEEEEE---------EECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETT
T ss_pred CceeEEEEec---------cccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccc
Confidence 4678888887 333322233444 7889999999999871 0 0 1234567
Q ss_pred ----CCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCC----------------------------
Q 044082 106 ----FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSH---------------------------- 153 (243)
Q Consensus 106 ----l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---------------------------- 153 (243)
+++|+.+++.. .++...+..|..+++|+.++++.|.+....+..|..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 89999999998 777555667999999999999998754332222222
Q ss_pred --------------------------------------------------CCCCCEEEcCCccccCCcchHHHhhccccc
Q 044082 154 --------------------------------------------------LNKLTQLDLDFVDLSEASDWLQVITSLASL 183 (243)
Q Consensus 154 --------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 183 (243)
+++|+.+++.+|.++.++. ..+..+.+|
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~--~aF~~~~~L 252 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD--FTFAQKKYL 252 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT--TTTTTCTTC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH--hhhhCCCCC
Confidence 4566667777666666643 356666777
Q ss_pred cccccccccCCCCCCCCcccccCCCCCc-EEECCCCccccccchhHHhhhccCceeeCCC
Q 044082 184 RDLYLASSTLPSINRPSLSSMNSSTSLA-LLDLSSCGLSNSAYHWLFKISSNLLALDLNS 242 (243)
Q Consensus 184 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~ 242 (243)
+.+.+.+| +..+.. ..+..+ .+|+ .+++.. .++...+..|.++++ |+++++.+
T Consensus 253 ~~l~l~~n-i~~I~~--~aF~~~-~~L~~~l~l~~-~l~~I~~~aF~~c~~-L~~l~l~~ 306 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQ--RVFSNC-GRLAGTLELPA-SVTAIEFGAFMGCDN-LRYVLATG 306 (329)
T ss_dssp CEEECCTT-CCEECT--TTTTTC-TTCCEEEEECT-TCCEECTTTTTTCTT-EEEEEECS
T ss_pred CEEECCcc-cceehH--HHhhCC-hhccEEEEEcc-cceEEchhhhhCCcc-CCEEEeCC
Confidence 77777665 554444 445555 6677 777766 555334456666776 77777644
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.32 E-value=4.6e-13 Score=118.28 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=10.1
Q ss_pred HhhccccccccccccccC
Q 044082 176 VITSLASLRDLYLASSTL 193 (243)
Q Consensus 176 ~~~~l~~L~~L~l~~n~~ 193 (243)
.+..+++|++|++++|.+
T Consensus 288 ~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp GGGGGGGCCEEEETTCCC
T ss_pred HHhhcCCCcEEecCCCcC
Confidence 444555666666666554
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.28 E-value=5.4e-13 Score=117.84 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=61.0
Q ss_pred CceEEEecCCCCCCCCCCCCcccccchhhc-cCCCCcEEEccCC-CCCCCCcchhhcCCCCCcEEecCCccccccCCcC-
Q 044082 50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLL-ELQHLNYLDLSVN-DFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ- 126 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~- 126 (243)
++++.|+|+++ .+++..+..+. .+++|++|++++| .++...++..+..+++|++|++++|.+.+..+..
T Consensus 105 ~~L~~L~L~~~--------~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 105 TWLEEIRLKRM--------VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp TTCCEEEEESC--------BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred CCCCeEEeeCc--------EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 45677777763 55555555554 5677777777776 3332213344446777777777777765433322
Q ss_pred ---CCCCCCCcEEEccCCc--cccC-CccccCCCCCCCEEEcCCc
Q 044082 127 ---LGNLTNLQSLNLGYNS--LYVS-KFGWLSHLNKLTQLDLDFV 165 (243)
Q Consensus 127 ---l~~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n 165 (243)
...+++|++|++++|. ++.. ....+..+++|++|++++|
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 2355677777777665 2211 1111233566777777666
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.9e-11 Score=101.07 Aligned_cols=105 Identities=18% Similarity=0.171 Sum_probs=86.2
Q ss_pred EEEccCC-CCCCCCcchhhcCCCCCcEEecCC-ccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcC
Q 044082 86 YLDLSVN-DFLGNPIPEFIGFFTKLRFLDLSL-ANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163 (243)
Q Consensus 86 ~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 163 (243)
.++.+++ .++. +|. +..+++|++|+|++ |.+.+..+..++.+++|++|++++|++++..|..|..+++|++|+|+
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4677887 7776 777 88899999999996 89886666778899999999999999998888888999999999999
Q ss_pred CccccCCcchHHHhhccccccccccccccCCCC
Q 044082 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSI 196 (243)
Q Consensus 164 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 196 (243)
+|.+...+. ..+..++ |+.|++.+|.+...
T Consensus 89 ~N~l~~~~~--~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSW--KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCS--TTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCH--HHcccCC-ceEEEeeCCCccCC
Confidence 999988854 2444444 89999999888754
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=2.5e-13 Score=119.98 Aligned_cols=85 Identities=19% Similarity=0.222 Sum_probs=45.4
Q ss_pred CCCCCCEEEcCCccccCCcchHHHhh-ccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccch-hHHh
Q 044082 153 HLNKLTQLDLDFVDLSEASDWLQVIT-SLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYH-WLFK 230 (243)
Q Consensus 153 ~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~-~l~~ 230 (243)
.+++|+.|++++ .+++.. +..+. .+++|++|++++|.+++... ..+...+++|+.|++++|.+++..+. .+..
T Consensus 430 ~~~~L~~L~L~~-~l~~~~--~~~l~~~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKV--FEYIGTYAKKMEMLSVAFAGDSDLGM--HHVLSGCDSLRKLEIRDCPFGDKALLANASK 504 (594)
T ss_dssp HCTTCCEEECCS-SCCHHH--HHHHHHHCTTCCEEEEESCCSSHHHH--HHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred hCCCccEEeecC-cccHHH--HHHHHHhchhccEeeccCCCCcHHHH--HHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence 345555555544 333221 11222 25667777777766644322 22212237777888877777654433 3334
Q ss_pred hhccCceeeCCCC
Q 044082 231 ISSNLLALDLNSN 243 (243)
Q Consensus 231 l~~~L~~L~l~~N 243 (243)
+++ |++|++++|
T Consensus 505 l~~-L~~L~l~~~ 516 (594)
T 2p1m_B 505 LET-MRSLWMSSC 516 (594)
T ss_dssp GGG-SSEEEEESS
T ss_pred CCC-CCEEeeeCC
Confidence 666 777777765
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=1.2e-10 Score=96.82 Aligned_cols=138 Identities=18% Similarity=0.143 Sum_probs=58.2
Q ss_pred chhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccC--CCCCCCEEEcCC--cccc-C--Ccc
Q 044082 100 PEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLS--HLNKLTQLDLDF--VDLS-E--ASD 172 (243)
Q Consensus 100 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~l~-~--~~~ 172 (243)
...+..+++|+.|.++++.-. .++. + .+++|++|++..+.+.......+. .+++|+.|+|+. +... + ...
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 344455566666666554211 1222 2 245566666655554432222222 455555555532 1110 1 000
Q ss_pred hHHHh--hccccccccccccccCCCCCCCCcccc--cCCCCCcEEECCCCcccccc----chhHHhhhccCceeeCCCC
Q 044082 173 WLQVI--TSLASLRDLYLASSTLPSINRPSLSSM--NSSTSLALLDLSSCGLSNSA----YHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 173 ~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~~~~L~~L~L~~n~i~~~~----~~~l~~l~~~L~~L~l~~N 243 (243)
+...+ ..+++|++|++.+|.+..... ..+. ..+++|+.|+|+.|.+++.. +..+..+++ |+.|++++|
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~--~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~-L~~L~L~~n 317 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVV--EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH-LKFINMKYN 317 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHH--HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTT-CSEEECCSB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHH--HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCc-ceEEECCCC
Confidence 00111 134556666665555432111 1111 11255666666666555432 223334455 666655544
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=3.4e-09 Score=89.41 Aligned_cols=163 Identities=7% Similarity=0.043 Sum_probs=84.9
Q ss_pred CcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCc------
Q 044082 69 PLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNS------ 142 (243)
Q Consensus 69 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~------ 142 (243)
.+...-...|.++++|+.++++.|.++. ++.......+|+.+.+..+ +.......|..+++|+.+.+..+-
T Consensus 167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~ 243 (401)
T 4fdw_A 167 TLEQLKEDIFYYCYNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQE 243 (401)
T ss_dssp TCCEECSSTTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTT
T ss_pred CccEehHHHhhCcccCCeeecCCCcceE--echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccc
Confidence 3333334567778888888888777665 3333223566666666643 443334455666666666665431
Q ss_pred ---------------cccCCccccCCCCCCCEEEcCCcccc-----CCcchHHHhhccccccccccccccCCCCCCCCcc
Q 044082 143 ---------------LYVSKFGWLSHLNKLTQLDLDFVDLS-----EASDWLQVITSLASLRDLYLASSTLPSINRPSLS 202 (243)
Q Consensus 143 ---------------l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 202 (243)
++......|..+.+|+.+.+.+|.+. .++. ..+..+.+|+.+.+.. .++.+.. ..
T Consensus 244 aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~--~aF~~c~~L~~l~l~~-~i~~I~~--~a 318 (401)
T 4fdw_A 244 AFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP--YCLEGCPKLARFEIPE-SIRILGQ--GL 318 (401)
T ss_dssp TTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT--TTTTTCTTCCEECCCT-TCCEECT--TT
T ss_pred ccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH--HHhhCCccCCeEEeCC-ceEEEhh--hh
Confidence 22222334555555555555554443 1211 2455555566655552 2443333 34
Q ss_pred cccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 203 SMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 203 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+..+ .+|+.+.+..+ ++......|.++ . |+++++.+|
T Consensus 319 F~~c-~~L~~l~lp~~-l~~I~~~aF~~~-~-L~~l~l~~n 355 (401)
T 4fdw_A 319 LGGN-RKVTQLTIPAN-VTQINFSAFNNT-G-IKEVKVEGT 355 (401)
T ss_dssp TTTC-CSCCEEEECTT-CCEECTTSSSSS-C-CCEEEECCS
T ss_pred hcCC-CCccEEEECcc-ccEEcHHhCCCC-C-CCEEEEcCC
Confidence 4444 66666666443 442333455555 5 666666543
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=8.1e-10 Score=91.88 Aligned_cols=183 Identities=14% Similarity=0.087 Sum_probs=116.1
Q ss_pred CceEEEecCCCCCCCCCCCCc----ccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCc
Q 044082 50 GHVIMLNLKYKVDPVCPNRPL----RGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY 125 (243)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 125 (243)
++++.|.+.+... ....+ .+.+...+..+++|+.|+++++.-.. ++. + .+++|+.|++..|.+......
T Consensus 139 ~~L~~L~l~~~~~---e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 139 AHFEGLFWGDIDF---EEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp TTCSEEEECCCCT---TTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred chhhheeecCcch---hhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 5788888876311 00112 12455667888999999999884222 343 3 388999999998887644333
Q ss_pred CCC--CCCCCcEEEccC--CccccC-----Ccccc--CCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccC
Q 044082 126 QLG--NLTNLQSLNLGY--NSLYVS-----KFGWL--SHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTL 193 (243)
Q Consensus 126 ~l~--~l~~L~~L~l~~--n~l~~~-----~~~~l--~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~ 193 (243)
.+. .+|+|++|+++. +...+. +...+ ..+++|++|++.+|.+.+. .........+++|++|+|+.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 333 689999999853 221111 11122 2478999999999998764 11111123578999999999988
Q ss_pred CCCCC--CCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCC
Q 044082 194 PSINR--PSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNS 242 (243)
Q Consensus 194 ~~~~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~ 242 (243)
..... ....+..+ ++|+.|+++.|.|++.....+...- ..+++++.
T Consensus 292 ~d~G~~~L~~~L~~l-~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 292 TDEGARLLLDHVDKI-KHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp BHHHHHHHHTTHHHH-TTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred ChHHHHHHHhhcccC-CcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence 75321 00122344 8999999999999876666565521 24466654
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=7.3e-10 Score=83.52 Aligned_cols=92 Identities=15% Similarity=0.038 Sum_probs=46.5
Q ss_pred CCCCcEEEccCCccccCC----ccccCCCCCCCEEEcCCccccCC--cchHHHhhcccccccccc--ccccCCCCCC--C
Q 044082 130 LTNLQSLNLGYNSLYVSK----FGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYL--ASSTLPSINR--P 199 (243)
Q Consensus 130 l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l--~~n~~~~~~~--~ 199 (243)
.++|++|++++|.+.... ...+...++|++|++++|.+.+. ..+...+...++|++|++ ++|.+..... .
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 344455555555444321 12233335566666666666544 223344555556666666 5565543211 0
Q ss_pred CcccccCCCCCcEEECCCCcccc
Q 044082 200 SLSSMNSSTSLALLDLSSCGLSN 222 (243)
Q Consensus 200 ~~~~~~~~~~L~~L~L~~n~i~~ 222 (243)
...+... ++|++|++++|.+..
T Consensus 144 ~~~L~~n-~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 144 ANMLEKN-TTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHC-SSCCEEECCCSSHHH
T ss_pred HHHHHhC-CCcCEEeccCCCCCh
Confidence 0122333 678888888887753
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=3.1e-08 Score=83.51 Aligned_cols=154 Identities=8% Similarity=0.086 Sum_probs=102.9
Q ss_pred hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccc-----cCCcccc
Q 044082 77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLY-----VSKFGWL 151 (243)
Q Consensus 77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l 151 (243)
.|.++++|+.+++..+ ++.. -...|.. .+|+.+.+. +.+.......|..+++|+.+.+.++.+. ......|
T Consensus 221 aF~~~~~L~~l~l~~~-l~~I-~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN-VSTI-GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTTCTTCCCEECCTT-CCEE-CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred HhhCCCCCCEEecCCC-ccCc-ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 4555556666666543 2221 2233333 566666663 3344344567889999999999888764 3456778
Q ss_pred CCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhh
Q 044082 152 SHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI 231 (243)
Q Consensus 152 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l 231 (243)
..+.+|+.+.+. +.+..++. ..+..+.+|+.+.+..+ ++.+.. ..+..+ +|+.+++.+|.+.......+..+
T Consensus 297 ~~c~~L~~l~l~-~~i~~I~~--~aF~~c~~L~~l~lp~~-l~~I~~--~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 297 EGCPKLARFEIP-ESIRILGQ--GLLGGNRKVTQLTIPAN-VTQINF--SAFNNT--GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TTCTTCCEECCC-TTCCEECT--TTTTTCCSCCEEEECTT-CCEECT--TSSSSS--CCCEEEECCSSCCBCCCSSCCCS
T ss_pred hCCccCCeEEeC-CceEEEhh--hhhcCCCCccEEEECcc-ccEEcH--HhCCCC--CCCEEEEcCCCCcccccccccCC
Confidence 999999999998 45777643 37889999999999655 555544 344443 89999999998875445556666
Q ss_pred hccCceeeCCC
Q 044082 232 SSNLLALDLNS 242 (243)
Q Consensus 232 ~~~L~~L~l~~ 242 (243)
+..++.+.+..
T Consensus 369 ~~~l~~l~vp~ 379 (401)
T 4fdw_A 369 PDDITVIRVPA 379 (401)
T ss_dssp CTTCCEEEECG
T ss_pred CCCccEEEeCH
Confidence 53377776643
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=3.9e-09 Score=79.50 Aligned_cols=117 Identities=17% Similarity=0.111 Sum_probs=84.7
Q ss_pred cCCCCCCCCcEEEccCC-ccccC----CccccCCCCCCCEEEcCCccccCC--cchHHHhhccccccccccccccCCCCC
Q 044082 125 YQLGNLTNLQSLNLGYN-SLYVS----KFGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASSTLPSIN 197 (243)
Q Consensus 125 ~~l~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~ 197 (243)
..+...+.|++|++++| .+... +...+...++|++|++++|.+.+. ..+...+...++|++|+|++|.+....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34456677888888877 76543 234456678999999999999875 335556777789999999999987532
Q ss_pred C--CCcccccCCCCCcEEEC--CCCccccccc----hhHHhhhccCceeeCCCC
Q 044082 198 R--PSLSSMNSSTSLALLDL--SSCGLSNSAY----HWLFKISSNLLALDLNSN 243 (243)
Q Consensus 198 ~--~~~~~~~~~~~L~~L~L--~~n~i~~~~~----~~l~~l~~~L~~L~l~~N 243 (243)
. ....+... ++|++|+| ++|.|++... +.+...++ |++|++++|
T Consensus 110 ~~~l~~~L~~n-~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~-L~~L~L~~n 161 (185)
T 1io0_A 110 ILALVEALQSN-TSLIELRIDNQSQPLGNNVEMEIANMLEKNTT-LLKFGYHFT 161 (185)
T ss_dssp HHHHHHGGGGC-SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSS-CCEEECCCS
T ss_pred HHHHHHHHHhC-CCceEEEecCCCCCCCHHHHHHHHHHHHhCCC-cCEEeccCC
Confidence 1 00234445 78999999 8899987543 44555577 999999987
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.51 E-value=3.7e-08 Score=78.20 Aligned_cols=83 Identities=25% Similarity=0.219 Sum_probs=62.4
Q ss_pred cCCCCCcEEecCCccccc--cCCcCCCCCCCCcEEEccCCccccC-CccccCCCCCCCEEEcCCccccCC-cc----hHH
Q 044082 104 GFFTKLRFLDLSLANFSG--RIPYQLGNLTNLQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVDLSEA-SD----WLQ 175 (243)
Q Consensus 104 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~-~~----~~~ 175 (243)
..+++|++|++++|.+.+ .++..+..+++|+.|++++|.+++. ....+..+ +|+.|++.+|.+.+. +. ...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 468899999999999986 3445566899999999999999864 12233444 899999999999763 21 123
Q ss_pred Hhhccccccccc
Q 044082 176 VITSLASLRDLY 187 (243)
Q Consensus 176 ~~~~l~~L~~L~ 187 (243)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 567888998876
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.49 E-value=2.1e-07 Score=73.79 Aligned_cols=81 Identities=22% Similarity=0.209 Sum_probs=49.6
Q ss_pred CCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC--CCcEEECCCCccccccc-----
Q 044082 153 HLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST--SLALLDLSSCGLSNSAY----- 225 (243)
Q Consensus 153 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~----- 225 (243)
++++|+.|+|++|.+.+.+.++..+..+++|+.|+|++|.+.+.. .+..+ . +|++|+|++|.+++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~----~l~~l-~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER----ELDKI-KGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG----GGGGG-TTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch----hhhhc-ccCCcceEEccCCcCccccCcchhH
Confidence 455666777777776665433445566677777777777776542 22222 3 67777777777765443
Q ss_pred --hhHHhhhccCceee
Q 044082 226 --HWLFKISSNLLALD 239 (243)
Q Consensus 226 --~~l~~l~~~L~~L~ 239 (243)
..+..+++ |+.||
T Consensus 243 ~~~il~~~P~-L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPK-LLRLD 257 (267)
T ss_dssp HHHHHHHCTT-CCEES
T ss_pred HHHHHHHCcc-cCeEC
Confidence 23566676 77766
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.34 E-value=6.8e-08 Score=71.62 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=17.0
Q ss_pred CCcEEEccCCc-cccCCccccCCCCCCCEEEcCCc
Q 044082 132 NLQSLNLGYNS-LYVSKFGWLSHLNKLTQLDLDFV 165 (243)
Q Consensus 132 ~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n 165 (243)
+|++|++++|. ++......+..+++|++|+++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 45555555542 44433344445555555555555
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=1.8e-07 Score=69.38 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=44.2
Q ss_pred CCcEEEccCCccccCCccccCCCCCCCEEEcCCcc-ccCCcchHHHhhcc----cccccccccccc-CCCCCCCCccccc
Q 044082 132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD-LSEASDWLQVITSL----ASLRDLYLASST-LPSINRPSLSSMN 205 (243)
Q Consensus 132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~~ 205 (243)
.|++|+++++.++......+..+++|+.|++++|. +++.. ...+..+ ++|++|++++|. ++.... ..+..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g--L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC--LERLSQLENLQKSMLEMEIISCGNVTDKGI--IALHH 137 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH--HHHHHTCHHHHHHCCEEEEESCTTCCHHHH--HHGGG
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH--HHHHHhcccccCCCCEEEcCCCCcCCHHHH--HHHhc
Confidence 45555665555555444455556666666666653 44431 1233332 356666666653 443222 23444
Q ss_pred CCCCCcEEECCCCc-cc
Q 044082 206 SSTSLALLDLSSCG-LS 221 (243)
Q Consensus 206 ~~~~L~~L~L~~n~-i~ 221 (243)
+ ++|+.|+++++. |+
T Consensus 138 ~-~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 138 F-RNLKYLFLSDLPGVK 153 (176)
T ss_dssp C-TTCCEEEEESCTTCC
T ss_pred C-CCCCEEECCCCCCCC
Confidence 4 666666666653 44
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.93 E-value=3.2e-06 Score=63.72 Aligned_cols=119 Identities=12% Similarity=0.082 Sum_probs=75.0
Q ss_pred hhcCCCCCcEEecCCc-ccccc----CCcCCCCCCCCcEEEccCCccccCCccc----cCCCCCCCEEEcCCccccCC--
Q 044082 102 FIGFFTKLRFLDLSLA-NFSGR----IPYQLGNLTNLQSLNLGYNSLYVSKFGW----LSHLNKLTQLDLDFVDLSEA-- 170 (243)
Q Consensus 102 ~~~~l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~-- 170 (243)
.+..-+.|++|+++++ .+.+. +...+..-..|+.|++++|.+....... +..-.+|+.|+|++|.|.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445678888999875 66532 2344556677888888888887543333 33456788888888888766
Q ss_pred cchHHHhhccccccccccccccCCCCCC-----CCcccccCCCCCcEEECCCCccc
Q 044082 171 SDWLQVITSLASLRDLYLASSTLPSINR-----PSLSSMNSSTSLALLDLSSCGLS 221 (243)
Q Consensus 171 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~i~ 221 (243)
..+.+.+..-..|++|+|+++....+.. ....+..- ++|+.|+++.|.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCCcc
Confidence 3445566666778888887653211110 00123334 67888888777654
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.71 E-value=0.00016 Score=60.54 Aligned_cols=144 Identities=12% Similarity=0.059 Sum_probs=76.6
Q ss_pred hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082 78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157 (243)
Q Consensus 78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 157 (243)
+..+..++.+.+..+...- ....+..+..++.+......+. ...+..+.+|+.+.+..+ ++.....+|..+.+|
T Consensus 249 f~~~~~l~~~~~~~~~~~i--~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRI--GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTCSSCCEEEECCTTCEE--CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ccccccceeEEcCCCccee--eccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCC
Confidence 3444445555444432211 2233444555555544443222 123556667777777654 444445567777777
Q ss_pred CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237 (243)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~ 237 (243)
+.+++..+ ++.++. .++..+.+|+.+.+..+ ++.+.. ..+..+ .+|+.+++..+ ++ .+...+.++.+ |+.
T Consensus 323 ~~i~lp~~-v~~I~~--~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~C-~~L~~i~lp~~-~~-~~~~~F~~c~~-L~~ 392 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGK--RSFRGCTSLSNINFPLS-LRKIGA--NAFQGC-INLKKVELPKR-LE-QYRYDFEDTTK-FKW 392 (394)
T ss_dssp CEECCCTT-CCEECT--TTTTTCTTCCEECCCTT-CCEECT--TTBTTC-TTCCEEEEEGG-GG-GGGGGBCTTCE-EEE
T ss_pred CEEEeCCc-ccEEhH--HhccCCCCCCEEEECcc-ccEehH--HHhhCC-CCCCEEEECCC-CE-EhhheecCCCC-CcE
Confidence 77777543 544432 26677777777777655 444444 455555 77777777543 22 22334555555 544
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.56 E-value=2e-05 Score=59.33 Aligned_cols=117 Identities=14% Similarity=0.035 Sum_probs=70.7
Q ss_pred hhhccCCCCcEEEccCC-CCCCC---CcchhhcCCCCCcEEecCCccccccCCcCCC----CCCCCcEEEccCCccccCC
Q 044082 76 SSLLELQHLNYLDLSVN-DFLGN---PIPEFIGFFTKLRFLDLSLANFSGRIPYQLG----NLTNLQSLNLGYNSLYVSK 147 (243)
Q Consensus 76 ~~~~~l~~L~~L~l~~n-~l~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~n~l~~~~ 147 (243)
..+.+-+.|+.|+++++ .+... .+...+...+.|+.|+|++|.+.+.....++ .-..|++|++++|.++...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33445567777888775 55422 1234455667788888888877754433333 4467888888888876543
Q ss_pred c----cccCCCCCCCEEEcCCc---cccCC--cchHHHhhcccccccccccccc
Q 044082 148 F----GWLSHLNKLTQLDLDFV---DLSEA--SDWLQVITSLASLRDLYLASST 192 (243)
Q Consensus 148 ~----~~l~~l~~L~~L~l~~n---~l~~~--~~~~~~~~~l~~L~~L~l~~n~ 192 (243)
. +.+..-..|+.|++++| .+.+. ..+.+.+..-++|+.|+++.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2 33445566888888754 33332 2344556666778877776554
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.55 E-value=0.0003 Score=58.78 Aligned_cols=109 Identities=15% Similarity=0.093 Sum_probs=53.3
Q ss_pred hhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccc
Q 044082 102 FIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA 181 (243)
Q Consensus 102 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 181 (243)
.|..+..|+.+.+..+... .....+..+..|+.+.+.. .++......|..+.+|+.+.+..+ ++.+.+ .++..+.
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~--~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD--DAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCT
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH--hHhhCCC
Confidence 3455555666555443322 3334455555666665542 233333344555566666665432 333322 2455556
Q ss_pred cccccccccccCCCCCCCCcccccCCCCCcEEECCCCc
Q 044082 182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCG 219 (243)
Q Consensus 182 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 219 (243)
+|+.+.+..+ ++.+.. ..+..+ .+|+.+++.++.
T Consensus 335 ~L~~i~ip~s-v~~I~~--~aF~~C-~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPE--SAFSNC-TALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTT-CCBCCG--GGGTTC-TTCCEEEESSCH
T ss_pred CCCEEEECcc-cCEEhH--hHhhCC-CCCCEEEECCce
Confidence 6666655433 333333 344444 566666665553
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.53 E-value=0.00062 Score=56.44 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=36.1
Q ss_pred CCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccC
Q 044082 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNS 206 (243)
Q Consensus 127 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 206 (243)
+..+..|+.+.+..+ +.......+..+.+|+.+.+..+.+..+++ ..+..+.+|+.+.+..+ ++.+.. .++..+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~--~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~C 332 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEP--RVFMDCVKLSSVTLPTA-LKTIQV--YAFKNC 332 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECT--TTTTTCTTCCEEECCTT-CCEECT--TTTTTC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehh--hhhcCCCCCCEEEcCcc-ccEEHH--HHhhCC
Confidence 444444544444332 222223334455555555555544444422 24455555555555332 232222 233333
Q ss_pred CCCCcEEECC
Q 044082 207 STSLALLDLS 216 (243)
Q Consensus 207 ~~~L~~L~L~ 216 (243)
.+|+.+.+.
T Consensus 333 -~~L~~i~ip 341 (379)
T 4h09_A 333 -KALSTISYP 341 (379)
T ss_dssp -TTCCCCCCC
T ss_pred -CCCCEEEEC
Confidence 455555443
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.49 E-value=0.00024 Score=59.43 Aligned_cols=111 Identities=11% Similarity=0.155 Sum_probs=67.6
Q ss_pred CCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcc
Q 044082 123 IPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLS 202 (243)
Q Consensus 123 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 202 (243)
....+..+..|+.+.+..+... .....+..+..|+.+.+. +.+...++ ..+..+.+|+.+.+..+ ++.+.. ..
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~--~aF~~c~~L~~i~lp~~-v~~I~~--~a 329 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPE--SVFAGCISLKSIDIPEG-ITQILD--DA 329 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECT--TTTTTCTTCCEEECCTT-CCEECT--TT
T ss_pred ccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCc--eeecCCCCcCEEEeCCc-ccEehH--hH
Confidence 3445667777777777655332 334556677777777775 34444433 26677777777777653 444433 45
Q ss_pred cccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082 203 SMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243 (243)
Q Consensus 203 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N 243 (243)
+..+ .+|+.+.+..+ ++.....+|.++.+ |+.+++.+|
T Consensus 330 F~~C-~~L~~i~ip~s-v~~I~~~aF~~C~~-L~~i~~~~~ 367 (394)
T 4gt6_A 330 FAGC-EQLERIAIPSS-VTKIPESAFSNCTA-LNNIEYSGS 367 (394)
T ss_dssp TTTC-TTCCEEEECTT-CCBCCGGGGTTCTT-CCEEEESSC
T ss_pred hhCC-CCCCEEEECcc-cCEEhHhHhhCCCC-CCEEEECCc
Confidence 5555 77888777544 54333456667777 777776653
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.43 E-value=0.00052 Score=57.33 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=56.0
Q ss_pred ccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHH
Q 044082 150 WLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLF 229 (243)
Q Consensus 150 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~ 229 (243)
.+..+.+|+.+.+..+ +..+++ ..+..+.+|+.+.+..+ ++.+.. ..+..+ .+|+.+.+..+ ++.....+|.
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~--~aF~~c~~L~~i~lp~~-v~~I~~--~aF~~c-~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGE--EAFESCTSLVSIDLPYL-VEEIGK--RSFRGC-TSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECT--TTTTTCTTCCEECCCTT-CCEECT--TTTTTC-TTCCEECCCTT-CCEECTTTBT
T ss_pred cccccccccccccccc-cceech--hhhcCCCCCCEEEeCCc-ccEEhH--HhccCC-CCCCEEEECcc-ccEehHHHhh
Confidence 3555667777777543 444432 36778888888888643 554544 456666 88999998766 5534455777
Q ss_pred hhhccCceeeCCC
Q 044082 230 KISSNLLALDLNS 242 (243)
Q Consensus 230 ~l~~~L~~L~l~~ 242 (243)
++.+ |+++++..
T Consensus 364 ~C~~-L~~i~lp~ 375 (394)
T 4fs7_A 364 GCIN-LKKVELPK 375 (394)
T ss_dssp TCTT-CCEEEEEG
T ss_pred CCCC-CCEEEECC
Confidence 8888 88887754
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.38 E-value=0.001 Score=55.18 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=81.0
Q ss_pred hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082 76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN 155 (243)
Q Consensus 76 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 155 (243)
..+.++..|+.+.+..+ ++.. -...+..+.+|+.+.+..+ +.......+..+.+|+.+.+.++.++......|.++.
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccccCCccceEEEcCCC-ccEe-Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 45667777888877665 3332 3456677888888888654 4424445678899999999998888777778899999
Q ss_pred CCCEEEcCCccccCCcchHHHhhccccccccccccc
Q 044082 156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASS 191 (243)
Q Consensus 156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 191 (243)
+|+.+.+..+ ++.+.. .++..+.+|+.+.+..+
T Consensus 311 ~L~~i~lp~~-l~~I~~--~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQV--YAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCCEEECCTT-CCEECT--TTTTTCTTCCCCCCCTT
T ss_pred CCCEEEcCcc-ccEEHH--HHhhCCCCCCEEEECCc
Confidence 9999999754 555543 37889999999988654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.62 E-value=0.006 Score=42.60 Aligned_cols=38 Identities=24% Similarity=0.112 Sum_probs=24.6
Q ss_pred CCcEEEccCCccccCCccccCCCCCCCEEEcCCccccC
Q 044082 132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSE 169 (243)
Q Consensus 132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 169 (243)
+|++|+|++|+++...+..|..+++|++|+|.+|.+.=
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 46666666666665555556666677777777776653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.45 E-value=0.0063 Score=42.49 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=21.4
Q ss_pred CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccc
Q 044082 83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANF 119 (243)
Q Consensus 83 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~ 119 (243)
++++|+|++|.++.. .+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCe
Confidence 466666666666654 444555566666666666544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.76 E-value=27 Score=22.50 Aligned_cols=13 Identities=15% Similarity=0.064 Sum_probs=5.6
Q ss_pred hcCCCCCcEEecC
Q 044082 103 IGFFTKLRFLDLS 115 (243)
Q Consensus 103 ~~~l~~L~~L~l~ 115 (243)
|.++.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP 28 (100)
T 2lz0_A 16 FAGNTVIREITVQ 28 (100)
T ss_dssp TTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcC
Confidence 3444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.95 E-value=81 Score=20.12 Aligned_cols=40 Identities=15% Similarity=-0.107 Sum_probs=19.1
Q ss_pred chhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCC
Q 044082 75 NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSL 116 (243)
Q Consensus 75 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 116 (243)
...|.++..|+.+.+..+- +.. -...|..+.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~v-~~I-g~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPNI-GLL-YDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTTS-SCC-CTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCch-heE-cHHHHhccCCccEEEEcC
Confidence 3455555666665555432 111 233455555555555543
Done!