BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044084
(343 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66GP4|PP379_ARATH Pentatricopeptide repeat-containing protein At5g13770,
chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2
SV=1
Length = 609
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/357 (55%), Positives = 257/357 (71%), Gaps = 18/357 (5%)
Query: 5 SKLHYYEKMK-SAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLD-LTPSSTHM 62
S + ++++K S G+ GCYC+IMEA KIG++ KV LF E +S++L L S +
Sbjct: 191 STIQVFDRLKQSVGVEPSPGCYCRIMEAHEKIGENHKVVELFQEFKSQRLSFLAKESGSI 250
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y I+C SL KSGRAFE L+ +MK+KGI E +Y+ LI +FA EV + E+LFKEA
Sbjct: 251 YTIVCSSLAKSGRAFEALEVLEEMKDKGIPESSELYSMLIRAFAEAREVVITEKLFKEAG 310
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
K +L+D E+ LK+VLMY+ EG +E TLEVV +M+ AEL ++DCI C IVNGFSK+R +
Sbjct: 311 GKKLLKDPEMCLKVVLMYVREGNMETTLEVVAAMRKAELKVTDCILCAIVNGFSKQRGFA 370
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
AVKVYE + + C GQVTYA INAYCR+ Y+KAE +F EM +KGFDKCVVAYS+++
Sbjct: 371 EAVKVYEWAMKEECEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVVAYSNIM 430
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK----------- 291
MYGKT R+ DA+RL+AKMK +GC+PN+WIYNSL+DMHGRA +LR+ EK
Sbjct: 431 DMYGKTRRLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVL 490
Query: 292 -----YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343
YT++ISAYN ++E + CV+ Y EFRMN G IDRAMAGIMVGVFSK S+I+EL
Sbjct: 491 PDKVSYTSMISAYNRSKELERCVELYQEFRMNRGKIDRAMAGIMVGVFSKTSRIDEL 547
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 80/177 (45%), Gaps = 5/177 (2%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y + D GK+ R + ++ MK++G + +Y SLI +++ AE+++KE +
Sbjct: 426 YSNIMDMYGKTRRLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMK 485
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
+L D + ++ Y +E+ +E+ + + I ++ ++V FSK
Sbjct: 486 RAKVLPDKVSYTSMISAYNRSKELERCVELYQEFRMNRGKIDRAMAGIMVGVFSKTSRID 545
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYS 239
+++ + + +G Y+S +NA GL S+ I Q+ FD + S
Sbjct: 546 ELMRLLQDMKVEGTRLDARLYSSALNALRDAGLNSQ-----IRWLQESFDAAQTSTS 597
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 155/337 (45%), Gaps = 21/337 (6%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK 72
MK G+V + Y +ME K G LF E R ++ S H+Y L +
Sbjct: 285 MKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIE---SDVHVYTSLISWNCR 341
Query: 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV 132
G F ++ EKG+ Y +LI + E+ AE L E + KG+ V
Sbjct: 342 KGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVV 401
Query: 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISC-VIVNGFSKRRAYWAAVKVYEQL 191
F L+ Y +GMV++ + + M+ +D +C I + F++ + Y A + ++
Sbjct: 402 FNTLIDGYCRKGMVDEASMIYDVMEQKGFQ-ADVFTCNTIASCFNRLKRYDEAKQWLFRM 460
Query: 192 ISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI 251
+ G V+Y ++I+ YC+ G +A+++F+EM KG + Y+ M+ Y K G+I
Sbjct: 461 MEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKI 520
Query: 252 RDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN------------LRQLEK----YTTV 295
++A +L A M+ G +P+ + Y SL+ A N L+ L++ YT +
Sbjct: 521 KEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVM 580
Query: 296 ISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVG 332
IS + A + D Y+E + G ID + ++G
Sbjct: 581 ISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIG 617
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 73/139 (52%)
Query: 150 LEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINA 209
LE+ M ++ + I+ ++V G +R + K+ ++ +G P TY +IINA
Sbjct: 209 LEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINA 268
Query: 210 YCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPN 269
Y + +S E V M++ G V Y+ ++ + K G++ DA +L +M+ +G E +
Sbjct: 269 YVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESD 328
Query: 270 VWIYNSLMDMHGRAKNLRQ 288
V +Y SL+ + R N+++
Sbjct: 329 VHVYTSLISWNCRKGNMKR 347
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 117/282 (41%), Gaps = 18/282 (6%)
Query: 78 EILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLV 137
E L+ F M +KG+ D + + + + E+F+ + G+ + +V
Sbjct: 172 EGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVV 231
Query: 138 LMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCI 197
G VEK+ ++++ + I+N + K+R + V + + G +
Sbjct: 232 EGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVV 291
Query: 198 PGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRL 257
+VTY ++ + G S AEK+F EM+++G + V Y+S+++ + G ++ A L
Sbjct: 292 YNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLL 351
Query: 258 VAKMKPKGCEPNVWIYNSLMD-----------------MHGRAKNLRQLEKYTTVISAYN 300
++ KG P+ + Y +L+D M + N+ Q+ + T+I Y
Sbjct: 352 FDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQV-VFNTLIDGYC 410
Query: 301 MAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
D Y+ G D + F++L + +E
Sbjct: 411 RKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDE 452
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK 72
M++ G+ DS Y ++ + ++ LF E + LD ++ Y ++ L K
Sbjct: 530 MEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLD---QNSVTYTVMISGLSK 586
Query: 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFAS 107
+G++ E + +MK KG D VY +LI S S
Sbjct: 587 AGKSDEAFGLYDEMKRKGYTIDNKVYTALIGSMHS 621
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 150/312 (48%), Gaps = 38/312 (12%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L Y++++ + LD I+ F K GD K AL L ++ L+ + + I+
Sbjct: 254 LRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSK--ALQLLGMAQATGLSAKTATLVSII 311
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
+L SGR E F ++++ GI Y +L+ + +K AE + E E++G+
Sbjct: 312 S-ALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGV 370
Query: 127 --------------------------LRDLE---------VFLKLVLMYIEEGMVEKTLE 151
L+++E VF +L+ + + G +KT +
Sbjct: 371 SPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQ 430
Query: 152 VVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYC 211
V++ MK+ + V+++ F K A+ +++++S+G P +VT+ ++I+ +C
Sbjct: 431 VLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHC 490
Query: 212 RIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVW 271
+ G + AE++F M+++G C Y+ M+ YG R D RL+ KMK +G PNV
Sbjct: 491 KHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVV 550
Query: 272 IYNSLMDMHGRA 283
+ +L+D++G++
Sbjct: 551 THTTLVDVYGKS 562
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 132/289 (45%), Gaps = 9/289 (3%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
++M++ + +S + +++ F G+ +K + E +S + + P Y ++ D+
Sbjct: 398 KEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKS--IGVKPDR-QFYNVVIDTF 454
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
GK + F M +GI D + +LI VAEE+F+ E +G L
Sbjct: 455 GKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCA 514
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
+ ++ Y ++ + ++ MK+ + + +V+ + K + A++ E+
Sbjct: 515 TTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEE 574
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
+ S G P Y ++INAY + GL +A F M G ++A +S++ +G+ R
Sbjct: 575 MKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRR 634
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAY 299
+A ++ MK G +P+V Y +LM K L +++K+ V Y
Sbjct: 635 DAEAFAVLQYMKENGVKPDVVTYTTLM------KALIRVDKFQKVPVVY 677
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 113/266 (42%), Gaps = 3/266 (1%)
Query: 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY 63
Q ++MKS G+ D Y +++ F K + F S ++ P +
Sbjct: 426 QKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIE--PDRV-TW 482
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
L D K GR + F M+ +G L + Y +I S+ + L + +
Sbjct: 483 NTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKS 542
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183
+G+L ++ LV +Y + G +E +E MK+ L S + ++N +++R
Sbjct: 543 QGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQ 602
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243
AV + + S G P + S+INA+ ++A V M++ G VV Y++++
Sbjct: 603 AVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMK 662
Query: 244 MYGKTGRIRDAMRLVAKMKPKGCEPN 269
+ + + + +M GC+P+
Sbjct: 663 ALIRVDKFQKVPVVYEEMIMSGCKPD 688
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 132/295 (44%), Gaps = 23/295 (7%)
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
+Y IL +LG+S + +E + +K L P Y +LI + A +++ A L +
Sbjct: 169 LYSILIHALGRSEKLYEAFL----LSQKQTLT-PLTYNALIGACARNNDIEKALNLIAKM 223
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKT--LEVVESMKNAELNISDCISCVIVNGFSKRR 179
+ G D + ++ ++ L + + ++ +L + + I+ GF+K
Sbjct: 224 RQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSG 283
Query: 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYS 239
A+++ + G T SII+A G +AE +F E++Q G AY+
Sbjct: 284 DPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYN 343
Query: 240 SMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMH---GRAKNLRQLEK----- 291
+++ Y KTG ++DA +V++M+ +G P+ Y+ L+D + GR ++ R + K
Sbjct: 344 ALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAG 403
Query: 292 --------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLS 338
++ +++ + E+ + E + G DR +++ F K +
Sbjct: 404 DVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFN 458
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 141/289 (48%), Gaps = 9/289 (3%)
Query: 9 YYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCD 68
++++M+ G+ D + ++ + G E LF E +R+++ Y L D
Sbjct: 326 FFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIE---QDVFSYNTLLD 382
Query: 69 SLGKSGR---AFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKG 125
++ K G+ AFEIL M K I+ + Y+++I FA A LF E G
Sbjct: 383 AICKGGQMDLAFEILA---QMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLG 439
Query: 126 MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAV 185
+ D + L+ +Y + G E+ L+++ M + + ++ G+ K+ Y
Sbjct: 440 IALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVK 499
Query: 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245
KV+ ++ + +P +TY+++I+ Y + GLY +A ++F E + G VV YS+++
Sbjct: 500 KVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDAL 559
Query: 246 GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTT 294
K G + A+ L+ +M +G PNV YNS++D GR+ + + Y+
Sbjct: 560 CKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSN 608
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 145/341 (42%), Gaps = 27/341 (7%)
Query: 5 SKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYK 64
SK+H+ + + S + A GD E +L L ES+ L S Y
Sbjct: 146 SKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEMFHSLMLSFESK---LCGSDDCTYI 202
Query: 65 ILCDSLGKSGRAFEILKF--FRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
I LG + + F F +E+ E + +++I + +V +A+ +F+ A
Sbjct: 203 I--RELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAF 260
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
G + F L+ Y G+ E+ + V SMK L + +++ K +
Sbjct: 261 AGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEF 320
Query: 183 AAV-KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
V K ++++ G P ++T+ S++ R GL+ A +F EM + ++ V +Y+++
Sbjct: 321 KQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTL 380
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNM 301
+ K G++ A ++A+M K PNV Y+TVI +
Sbjct: 381 LDAICKGGQMDLAFEILAQMPVKRIMPNV-------------------VSYSTVIDGFAK 421
Query: 302 AREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
A FD + + E R G +DR ++ +++K+ + EE
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEE 462
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 127/280 (45%), Gaps = 19/280 (6%)
Query: 58 SSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLI--CSFASIAEVKVAE 115
++ + + L + G+SG E + F MKE G+ + Y ++I C + E K
Sbjct: 266 NTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGM-EFKQVA 324
Query: 116 ELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGF 175
+ F E + G+ D F L+ + G+ E + + M N + +++
Sbjct: 325 KFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAI 384
Query: 176 SKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCV 235
K A ++ Q+ + +P V+Y+++I+ + + G + +A +F EM+ G
Sbjct: 385 CKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444
Query: 236 VAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHG-------------- 281
V+Y++++++Y K GR +A+ ++ +M G + +V YN+L+ +G
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504
Query: 282 --RAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNG 319
R L L Y+T+I Y+ + ++ + EF+ G
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAG 544
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 136/284 (47%), Gaps = 21/284 (7%)
Query: 12 KMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLG 71
+M G + D+ Y +++ + ++ K+ FL E K + + Y I+ DS
Sbjct: 473 EMIGQGFIPDTSTYSKVLNY---LCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFC 529
Query: 72 KSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLE 131
K+G + K+F +M+E G + Y +LI ++ +V A ELF+ +G L ++
Sbjct: 530 KAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIV 589
Query: 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDC-----------------ISCVIVNG 174
+ L+ + + G VEK ++ E M ++ ++ D +++G
Sbjct: 590 TYSALIDGHCKAGQVEKACQIFERMCGSK-DVPDVDMYFKQYDDNSERPNVVTYGALLDG 648
Query: 175 FSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC 234
F K A K+ + + +GC P Q+ Y ++I+ C++G +A++V EM + GF
Sbjct: 649 FCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPAT 708
Query: 235 VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
+ YSS++ Y K R A ++++KM C PNV IY ++D
Sbjct: 709 LYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMID 752
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 135/252 (53%), Gaps = 20/252 (7%)
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
+ LC S GK +AF ++ R+M +G + D S Y+ ++ + +++++A LF+E +
Sbjct: 456 RCLC-SAGKYEKAFSVI---REMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR 511
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183
G++ D+ + +V + + G++E+ + M+ + +++ + K +
Sbjct: 512 GGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSY 571
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVF-----------IEMQQKGFD 232
A +++E ++S+GC+P VTY+++I+ +C+ G KA ++F ++M K +D
Sbjct: 572 ANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYD 631
Query: 233 -----KCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLR 287
VV Y +++ + K+ R+ +A +L+ M +GCEPN +Y++L+D + L
Sbjct: 632 DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLD 691
Query: 288 QLEKYTTVISAY 299
+ ++ T +S +
Sbjct: 692 EAQEVKTEMSEH 703
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 111/282 (39%), Gaps = 48/282 (17%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLE-CESRKL------------DLT 56
+E M S G + + Y +++ K G EK +F C S+ + +
Sbjct: 576 FETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSE 635
Query: 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEE 116
+ Y L D KS R E K M +G + VY +LI + ++ A+E
Sbjct: 636 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 695
Query: 117 LFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFS 176
+ E E G L + L+ Y + +K +L
Sbjct: 696 VKTEMSEHGFPATLYTYSSLIDRYFK-------------VKRQDL--------------- 727
Query: 177 KRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVV 236
A KV +++ C P V Y +I+ C++G +A K+ M++KG VV
Sbjct: 728 -------ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVV 780
Query: 237 AYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
Y++M+ +G G+I + L+ +M KG PN Y L+D
Sbjct: 781 TYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLID 822
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/344 (18%), Positives = 147/344 (42%), Gaps = 35/344 (10%)
Query: 17 GIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRA 76
G +LD C +E K+ D+ + CE ++ +Y L D L K G+
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAMSMEG----CEPNQI--------VYDALIDGLCKVGKL 690
Query: 77 FEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKL 136
E + +M E G Y+SLI + + +A ++ + E ++ ++ ++
Sbjct: 691 DEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEM 750
Query: 137 VLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGC 196
+ + G ++ ++++ M+ + +++GF +++ E++ S+G
Sbjct: 751 IDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGV 810
Query: 197 IPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMR 256
P VTY +I+ C+ G A + EM+Q + Y ++ + K +++
Sbjct: 811 APNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK--EFIESLG 868
Query: 257 LVAKMKPKGCEPNVWIYNSLMDMHGRAKN----LRQLEK--------------YTTVISA 298
L+ ++ P + +Y L+D +A+ LR LE+ Y ++I +
Sbjct: 869 LLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIES 928
Query: 299 YNMAREFDMCVKFYNEFRMNGGVID-RAMAGIMVGVF--SKLSQ 339
+A + + + ++E G + + ++ ++ G+F SK+S+
Sbjct: 929 LCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISE 972
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/314 (19%), Positives = 117/314 (37%), Gaps = 40/314 (12%)
Query: 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFK 119
T Y L L ++ E + F M+ L + Y++L+C + ++ + +
Sbjct: 302 TVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLN 361
Query: 120 EAEEKGMLRDLEVFLKLVLMYIEEG-------MVEKTLEVVESMKNAELNI--------S 164
+G ++F LV Y G +++K ++ NI
Sbjct: 362 MMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDK 421
Query: 165 DCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFI 224
D ++C +++ A K Y ++++ G + ++ +S C G Y KA V
Sbjct: 422 DSLNCDLLD---------LAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIR 472
Query: 225 EMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK 284
EM +GF YS ++ ++ A L +MK G +V+ Y ++D +A
Sbjct: 473 EMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG 532
Query: 285 NLRQLEK----------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAG 328
+ Q K YT +I AY A++ + + G + +
Sbjct: 533 LIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592
Query: 329 IMVGVFSKLSQIEE 342
++ K Q+E+
Sbjct: 593 ALIDGHCKAGQVEK 606
Score = 38.9 bits (89), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E+MK + Y +++E F K E + +L L E + D P + +Y++L D+L
Sbjct: 838 EEMKQTHWPTHTAGYRKVIEGFNK----EFIESLGLLDEIGQDDTAPFLS-VYRLLIDNL 892
Query: 71 GKSGRAFEILKFFRDMK--EKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR 128
K+ R L+ ++ +++ S Y SLI S +V+ A +LF E +KG++
Sbjct: 893 IKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIP 952
Query: 129 DLEVFLKLV 137
+++ F L+
Sbjct: 953 EMQSFCSLI 961
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 172 VNGFSKRRAYWAAVKV---YEQLI---SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIE 225
++GF+ R ++ KV E L ++ +P V Y +I+ C L+ +A
Sbjct: 268 MDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNR 327
Query: 226 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
M+ VV YS+++ ++ R++ M +GC P+ I+NSL+
Sbjct: 328 MRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLV 379
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 84/209 (40%), Gaps = 12/209 (5%)
Query: 74 GRAFEILKFF-RDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV 132
R ++ FF ++ G VY +L+ + KV EE ++ + D EV
Sbjct: 143 ARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDD----DKEV 198
Query: 133 FLK----LVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188
F + LV + G LE + +K+ S ++ F K +A ++
Sbjct: 199 FGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIH 258
Query: 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248
++ T + C++G + +A + ++ + F V Y+ +++ +
Sbjct: 259 REMSLANLRMDGFTLRCFAYSLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEA 315
Query: 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
+AM + +M+ C PNV Y++L+
Sbjct: 316 SLFEEAMDFLNRMRATSCLPNVVTYSTLL 344
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 1/226 (0%)
Query: 58 SSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEEL 117
+ Y +L SL S R E L ++M+E GI + Y LI S S + + A EL
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380
Query: 118 FKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177
+ EKG++ ++ + L+ Y + GM+E ++VVE M++ +L+ + ++ G+ K
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440
Query: 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA 237
+ A+ V +++ + +P VTY S+I+ CR G + A ++ M +G
Sbjct: 441 SNVH-KAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499
Query: 238 YSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRA 283
Y+SM+ K+ R+ +A L ++ KG PNV +Y +L+D + +A
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKA 545
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 1/249 (0%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y + DSL KS R E F +++KG+ + +Y +LI + +V A + ++
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
K L + F L+ +G +++ + E M L + ++++ K +
Sbjct: 560 SKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFD 619
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
A ++Q++S G P TY + I YCR G AE + +M++ G + YSS++
Sbjct: 620 HAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMA 302
YG G+ A ++ +M+ GCEP+ + SL+ K +Q + + NM
Sbjct: 680 KGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMM 739
Query: 303 REFDMCVKF 311
EFD V+
Sbjct: 740 -EFDTVVEL 747
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 124/292 (42%), Gaps = 14/292 (4%)
Query: 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLE-----CESRKLDLT 56
N + Y K+ AG+ D Y ++ + + D + +F E C ++
Sbjct: 233 NVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEV--- 289
Query: 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEE 116
+ TH+ LC + R E + F MK+ Y LI S A
Sbjct: 290 -AYTHLIHGLC----VARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALN 344
Query: 117 LFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFS 176
L KE EE G+ ++ + L+ + EK E++ M L + ++NG+
Sbjct: 345 LVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYC 404
Query: 177 KRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVV 236
KR AV V E + S+ P TY +I YC+ ++ KA V +M ++ VV
Sbjct: 405 KRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVLPDVV 463
Query: 237 AYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ 288
Y+S++ ++G A RL++ M +G P+ W Y S++D ++K + +
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEE 515
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 142/335 (42%), Gaps = 18/335 (5%)
Query: 23 GCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKF 82
GCY ++ + + G +++ +++E K+ P+ + Y + + K G E ++
Sbjct: 184 GCYNTLLNSLARFGLVDEMKQVYMEMLEDKV--CPN-IYTYNKMVNGYCKLGNVEEANQY 240
Query: 83 FRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142
+ E G+ D Y SLI + ++ A ++F E KG R+ + L+
Sbjct: 241 VSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCV 300
Query: 143 EGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVT 202
+++ +++ MK+ E + V++ A+ + +++ G P T
Sbjct: 301 ARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHT 360
Query: 203 YASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262
Y +I++ C + KA ++ +M +KG V+ Y++++ Y K G I DA+ +V M+
Sbjct: 361 YTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELME 420
Query: 263 PKGCEPNVWIYNSLMDMHGRA---------------KNLRQLEKYTTVISAYNMAREFDM 307
+ PN YN L+ + ++ K L + Y ++I + FD
Sbjct: 421 SRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDS 480
Query: 308 CVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
+ + G V D+ M+ K ++EE
Sbjct: 481 AYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEE 515
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 8/217 (3%)
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDP-----SVYASLICSFASIAEVKVAEELFKEA 121
CDS+G A +L R M + E Y +L+ S A V ++++ E
Sbjct: 153 CDSVGD---ALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEM 209
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181
E + ++ + K+V Y + G VE+ + V + A L+ ++ G+ +R+
Sbjct: 210 LEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDL 269
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
+A KV+ ++ +GC +V Y +I+ C +A +F++M+ V Y+ +
Sbjct: 270 DSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVL 329
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
+ + R +A+ LV +M+ G +PN+ Y L+D
Sbjct: 330 IKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLID 366
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 21/261 (8%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
EKM G+ ++ K GD + + F + S T H Y +
Sbjct: 591 EKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG---TKPDAHTYTTFIQTY 647
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
+ GR + M+E G+ D Y+SLI + + + A ++ K + G
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ 707
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
FL L+ +E MK + S+ C + N + V++ E+
Sbjct: 708 HTFLSLIKHLLE-------------MKYGKQKGSEPELCAMSNMME----FDTVVELLEK 750
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ-KGFDKCVVAYSSMVAMYGKTG 249
++ P +Y +I C +G AEKVF MQ+ +G + ++++++ K
Sbjct: 751 MVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLK 810
Query: 250 RIRDAMRLVAKMKPKGCEPNV 270
+ +A ++V M G P +
Sbjct: 811 KHNEAAKVVDDMICVGHLPQL 831
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 3/266 (1%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK 72
M G++ D Y I+ + G ++ + S D Y +L D L K
Sbjct: 257 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS---DGVEPDVVTYSLLMDYLCK 313
Query: 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV 132
+GR E K F M ++G+ + + Y +L+ +A+ + L G+ D V
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192
F L+ Y ++G V++ + V M+ LN + ++ K A+ +EQ+I
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433
Query: 193 SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR 252
+G PG + Y S+I+ C + +AE++ +EM +G + ++S++ + K GR+
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 493
Query: 253 DAMRLVAKMKPKGCEPNVWIYNSLMD 278
++ +L M G +PNV YN+L++
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLIN 519
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 123/275 (44%), Gaps = 5/275 (1%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
LH + G D Y ++ F+K GDS+K + + E R + P Y +
Sbjct: 181 LHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGI--LPDVV-TYNSI 237
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
+L K+ + ++ M + G++ D Y S++ + S + K A K+ G+
Sbjct: 238 IAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGV 297
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186
D+ + L+ + G + ++ +SM L ++ G++ + A
Sbjct: 298 EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 357
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246
+ + ++ G P ++ +I AY + G +A VF +M+Q+G + V Y +++ +
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC 417
Query: 247 KTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHG 281
K+GR+ DAM +M +G P +YNSL +HG
Sbjct: 418 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSL--IHG 450
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 5/273 (1%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK 72
M GI D + ++ A+ K G ++ +F + R+ L P++ Y + L K
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVF--SKMRQQGLNPNAV-TYGAVIGILCK 418
Query: 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV 132
SGR + + +F M ++G+ VY SLI + + + AEEL E ++G+ +
Sbjct: 419 SGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIF 478
Query: 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192
F ++ + +EG V ++ ++ E M + + ++NG+ A+K+ ++
Sbjct: 479 FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538
Query: 193 SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR 252
S G P VTY+++IN YC+I A +F EM+ G ++ Y+ ++ +T R
Sbjct: 539 SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 598
Query: 253 DAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN 285
A L ++ G + + YN + +HG KN
Sbjct: 599 AAKELYVRITESGTQIELSTYNII--LHGLCKN 629
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 125/283 (44%), Gaps = 24/283 (8%)
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
+ K LCD +S A E+L D + G D Y ++I F + A + E
Sbjct: 164 LLKGLCDE-NRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEM 222
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESM-KNAELNISDCIS-CVIVNGFSKRR 179
++G+L D+ + ++ + ++K +EV+ +M KN + DC++ I++G+
Sbjct: 223 LDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVM--PDCMTYNSILHGYCSSG 280
Query: 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYS 239
A+ +++ S G P VTY+ +++ C+ G +A K+F M ++G + Y
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340
Query: 240 SMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAY 299
+++ Y G + + L+ M G P+ ++++ L I AY
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSIL-------------------ICAY 381
Query: 300 NMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
+ D + +++ R G + G ++G+ K ++E+
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVED 424
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 108/270 (40%), Gaps = 3/270 (1%)
Query: 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY 63
+ + Y+E+M G+ + Y ++ E+ L LE R + L +T +
Sbjct: 423 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL---NTIFF 479
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
+ DS K GR E K F M G+ + Y +LI + ++ A +L
Sbjct: 480 NSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVS 539
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183
G+ + + L+ Y + +E L + + M+++ ++ +I+ G + R A
Sbjct: 540 VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAA 599
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243
A ++Y ++ G TY I++ C+ L A ++F + ++ M+
Sbjct: 600 AKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMID 659
Query: 244 MYGKTGRIRDAMRLVAKMKPKGCEPNVWIY 273
K GR +A L G PN W Y
Sbjct: 660 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 178 RRAYWAAVKVYEQLISQGC---IPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC 234
R + AAV Y ++ G P TY +I CR G + +KGF
Sbjct: 62 RDSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVD 121
Query: 235 VVAYSSMVAMYGKTGRIRDAMRLVA-KMKPKGCEPNVWIYNSLM 277
+A++ ++ R DAM +V +M GC PNV+ YN L+
Sbjct: 122 AIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILL 165
Score = 38.5 bits (88), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/176 (18%), Positives = 72/176 (40%), Gaps = 1/176 (0%)
Query: 55 LTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVA 114
L P+ T Y L + K R + L F++M+ G+ D Y ++ A
Sbjct: 542 LKPN-TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 600
Query: 115 EELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG 174
+EL+ E G +L + ++ + + + L++ +++ +L + ++++
Sbjct: 601 KELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDA 660
Query: 175 FSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230
K A ++ S G +P TY + GL + +++F+ M+ G
Sbjct: 661 LLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 716
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 102/216 (47%)
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
MY + DSL K+G L F M+ GI D +Y SL+ + + A+ L +
Sbjct: 179 MYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGM 238
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181
++ + D+ F L+ +++EG E+ M + + ++NGF
Sbjct: 239 TKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCV 298
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
A +++ + ++GC P V Y S+IN +C+ A K+F EM QKG + Y+++
Sbjct: 299 DEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
+ +G+ G+ A + + M +G PN+ YN L+
Sbjct: 359 IQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLL 394
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 112/260 (43%), Gaps = 10/260 (3%)
Query: 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFF 83
C+CQ + + +A+ FL + KL P + L + R E +
Sbjct: 116 CFCQSSQPY--------LASSFLG-KMMKLGFEPDIV-TFTSLINGFCLGNRMEEAMSMV 165
Query: 84 RDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEE 143
M E GI D +Y ++I S V A LF + E G+ D+ ++ LV
Sbjct: 166 NQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNS 225
Query: 144 GMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTY 203
G ++ M ++ +++ F K + A ++Y ++I P TY
Sbjct: 226 GRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTY 285
Query: 204 ASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263
S+IN +C G +A ++F M+ KG VVAY+S++ + K ++ DAM++ +M
Sbjct: 286 TSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQ 345
Query: 264 KGCEPNVWIYNSLMDMHGRA 283
KG N Y +L+ G+
Sbjct: 346 KGLTGNTITYTTLIQGFGQV 365
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 32/215 (14%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y L + K + + +K F +M +KG+ + Y +LI F + + VA+E+F
Sbjct: 320 YTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMV 379
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
+G+ ++ + L+ G V+K L + E M+ E++
Sbjct: 380 SRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMD-------------------- 419
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
G P TY +++ C G KA VF +M+++ D ++ Y+ ++
Sbjct: 420 ------------GVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIII 467
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
K G++++A+ L + KG +PNV Y +++
Sbjct: 468 QGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMI 502
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 109/285 (38%), Gaps = 38/285 (13%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L +++M++ GI D Y ++ G +L RK+ + L
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIK---PDVITFNAL 253
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
D+ K G+ + + + +M I + Y SLI F V A ++F E KG
Sbjct: 254 IDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGC 313
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186
D+ + L+ + + V+ +++ M L + ++ GF + A +
Sbjct: 314 FPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQE 373
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246
V+ ++S+G P TY +++ C G KA +F +MQ++ D
Sbjct: 374 VFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMD-------------- 419
Query: 247 KTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK 291
G PN+W YN L +HG N +LEK
Sbjct: 420 ------------------GVAPNIWTYNVL--LHGLCYN-GKLEK 443
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 98/215 (45%)
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
+L + +S + + F M + G D + SLI F ++ A + + E
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183
G+ D+ ++ ++ + G V L + + M+N + + +VNG +
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRD 230
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243
A + + + P +T+ ++I+A+ + G + AE+++ EM + + Y+S++
Sbjct: 231 ADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLIN 290
Query: 244 MYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
+ G + +A ++ M+ KGC P+V Y SL++
Sbjct: 291 GFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLIN 325
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 6/221 (2%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK 72
M++ G D Y ++ F K + +F E + L +T Y L G+
Sbjct: 308 METKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLT---GNTITYTTLIQGFGQ 364
Query: 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEK---GMLRD 129
G+ + F M +G+ + Y L+ +VK A +F++ +++ G+ +
Sbjct: 365 VGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPN 424
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+ + L+ G +EK L V E M+ E++I +I+ G K AV ++
Sbjct: 425 IWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFC 484
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230
L S+G P VTY ++I+ R GL +A +F +M++ G
Sbjct: 485 SLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 128/281 (45%), Gaps = 3/281 (1%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
EKMKS GI D+ Y ++ + ++ A +F E ++ + Y L D
Sbjct: 268 EKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVT---YNALLDVY 324
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
GKS R E +K +M G Y SLI ++A + A EL + EKG D+
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDV 384
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
+ L+ + G VE + + E M+NA + C + + R + +K++++
Sbjct: 385 FTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDE 444
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
+ G P VT+ +++ + + G+ S+ VF EM++ GF ++++++ Y + G
Sbjct: 445 INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGS 504
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK 291
AM + +M G P++ YN+++ R Q EK
Sbjct: 505 FEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEK 545
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 161/355 (45%), Gaps = 19/355 (5%)
Query: 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY 63
+S + +E+M++AG + + ++ + G ++ +F E L+P +
Sbjct: 401 ESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINV--CGLSPDIV-TW 457
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
L G++G E+ F++MK G + + + +LI +++ + A +++ +
Sbjct: 458 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLD 517
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183
G+ DL + ++ GM E++ +V+ M++ ++ C +++ ++ +
Sbjct: 518 AGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGL 577
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243
+ E++ S P V +++ + L +AE+ F E++++GF + +SMV+
Sbjct: 578 MHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVS 637
Query: 244 MYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK------------ 291
+YG+ + A ++ MK +G P++ YNSLM MH R+ + + E+
Sbjct: 638 IYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKP 697
Query: 292 ----YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
Y TVI AY + ++E R +G V D +G ++ S EE
Sbjct: 698 DIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEE 752
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 38/301 (12%)
Query: 65 ILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEK 124
I+ LGK GR F ++E G D Y SLI +FA+ + A +FK+ EE
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237
Query: 125 GMLRDLEVFLKLVLMYIEEG--------MVEK--------------TL------------ 150
G L + ++ ++ + G +VEK TL
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 151 --EVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIIN 208
+V E MK A + +++ + K A+KV +++ G P VTY S+I+
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357
Query: 209 AYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEP 268
AY R G+ +A ++ +M +KG V Y+++++ + + G++ AM + +M+ GC+P
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKP 417
Query: 269 NVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAG 328
N+ +N+ + M+G ++ K I+ ++ + F NG +D ++G
Sbjct: 418 NICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNG--MDSEVSG 475
Query: 329 I 329
+
Sbjct: 476 V 476
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 17/276 (6%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIG---DSEKVAALFLECESRKLDLTPSST-HMYKI 65
Y +M AG+ D Y ++ A + G SEKV A + + +LT S H Y
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYA- 570
Query: 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS---LICSFASIAEVKVAEELFKEAE 122
+G+ ++ + G++E +V L+CS + + AE F E +
Sbjct: 571 -------NGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDL--LPEAERAFSELK 621
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
E+G D+ +V +Y MV K V++ MK S ++ S+ +
Sbjct: 622 ERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFG 681
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
+ ++ +++++G P ++Y ++I AYCR A ++F EM+ G V+ Y++ +
Sbjct: 682 KSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFI 741
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
Y +A+ +V M GC PN YNS++D
Sbjct: 742 GSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVD 777
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 86 MKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM 145
MKE+G + Y SL+ + A+ +EE+ +E KG+ D+ + ++ Y
Sbjct: 655 MKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTR 714
Query: 146 VEKTLEVVESMKNAELNISDCIS-CVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYA 204
+ + M+N+ + + D I+ + ++ + A+ V +I GC P Q TY
Sbjct: 715 MRDASRIFSEMRNSGI-VPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYN 773
Query: 205 SIINAYCRIGLYSKAEKVFIE 225
SI++ YC++ +A K+F+E
Sbjct: 774 SIVDGYCKLNRKDEA-KLFVE 793
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 107/243 (44%), Gaps = 20/243 (8%)
Query: 97 VYASLI-CSFASIAEVKVAEELFKEAEEK--GMLRDLEVFLKLVLMYIEEGMVEKTLEVV 153
V SLI +F S V ELF+ ++K +L FLK + + + + + +
Sbjct: 102 VLRSLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWF 161
Query: 154 ESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI 213
K+ + + + + +I++ K +A ++ L G +Y S+I+A+
Sbjct: 162 MKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANS 221
Query: 214 GLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAM-RLVAKMKPKGCEPNVWI 272
G Y +A VF +M++ G ++ Y+ ++ ++GK G + + LV KMK G P+ +
Sbjct: 222 GRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYT 281
Query: 273 YNSLM------DMHGRAKNLRQLEK----------YTTVISAYNMAREFDMCVKFYNEFR 316
YN+L+ +H A + + K Y ++ Y + +K NE
Sbjct: 282 YNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMV 341
Query: 317 MNG 319
+NG
Sbjct: 342 LNG 344
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 88/206 (42%), Gaps = 14/206 (6%)
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
CD L ++ RAF ++KE+G D + S++ + V A + +E+G
Sbjct: 607 CDLLPEAERAFS------ELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGF 660
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCIS-CVIVNGFSKRRAYWAAV 185
+ + L+ M+ K+ E++ + + D IS ++ + + A
Sbjct: 661 TPSMATYNSLMYMHSRSADFGKSEEILREILAKGIK-PDIISYNTVIYAYCRNTRMRDAS 719
Query: 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245
+++ ++ + G +P +TY + I +Y ++ +A V M + G Y+S+V Y
Sbjct: 720 RIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
Query: 246 GKTGRIRDAMRLVAKMK------PKG 265
K R +A V ++ PKG
Sbjct: 780 CKLNRKDEAKLFVEDLRNLDPHAPKG 805
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 131/285 (45%), Gaps = 6/285 (2%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
++M + G D Y ++ K GD++ L + E KL+ +Y + D L
Sbjct: 210 DRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE---PGVLIYNTIIDGL 266
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
K + L F++M+ KGI + Y+SLI + A L + E+ + D+
Sbjct: 267 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
F L+ +++EG + + ++ + M ++ S ++NGF A +++E
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
++S+ C P VTY ++I +C+ + +VF EM Q+G V Y+ ++ + G
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTV 295
A + +M G PN+ YN+L+D G KN +LEK V
Sbjct: 447 CDMAQEIFKEMVSDGVPPNIMTYNTLLD--GLCKN-GKLEKAMVV 488
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 128/273 (46%), Gaps = 7/273 (2%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L+ +++M++ GI + Y ++ G + L + RK++ + L
Sbjct: 276 LNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN---PDVFTFSAL 332
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSV--YASLICSFASIAEVKVAEELFKEAEEK 124
D+ K G+ E K + +M ++ I DPS+ Y+SLI F + A+++F+ K
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMVKRSI--DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390
Query: 125 GMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184
D+ + L+ + + VE+ +EV M L + +++ G + A
Sbjct: 391 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 450
Query: 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 244
+++++++S G P +TY ++++ C+ G KA VF +Q+ + + Y+ M+
Sbjct: 451 QEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG 510
Query: 245 YGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
K G++ D L + KG +P+V YN+++
Sbjct: 511 MCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMI 543
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 131/285 (45%), Gaps = 6/285 (2%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E+M++ GI + Y ++ F + S+ AL + + KL P+ + +L +
Sbjct: 105 EQMQNLGIPHNHYTYSILINCFCR--RSQLPLALAVLGKMMKLGYEPNIVTLSSLL-NGY 161
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
S R E + M G + + +LI + A L KG DL
Sbjct: 162 CHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDL 221
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
+ +V + G + ++ M+ +L I I++G K + A+ ++++
Sbjct: 222 VTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 281
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
+ ++G P VTY+S+I+ C G +S A ++ +M ++ + V +S+++ + K G+
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMD---MHGRAKNLRQLEKY 292
+ +A +L +M + +P++ Y+SL++ MH R +Q+ ++
Sbjct: 342 LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 95/203 (46%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y L K R E ++ FR+M ++G++ + Y LI + +A+E+FKE
Sbjct: 399 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 458
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
G+ ++ + L+ + G +EK + V E ++ +++ + +++ G K
Sbjct: 459 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
++ L +G P V Y ++I+ +CR G +A+ +F EM++ G Y++++
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
Query: 243 AMYGKTGRIRDAMRLVAKMKPKG 265
+ G + L+ +M+ G
Sbjct: 579 RARLRDGDREASAELIKEMRSCG 601
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
Query: 108 IAEVKV--AEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISD 165
++E+K+ A LF E + + F KL+ + + + + E M+N + +
Sbjct: 57 LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 116
Query: 166 CISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIE 225
+++N F +R A+ V +++ G P VT +S++N YC S+A + +
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176
Query: 226 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
M G+ V +++++ + +AM L+ +M KGC+P++ Y +++
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN 229
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+++M S G+ + Y +++ K G EK +F + K++ T + Y I+ +
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT---IYTYNIMIEG 510
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
+ K+G+ + F ++ KG+ D Y ++I F + A+ LFKE +E G L +
Sbjct: 511 MCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKN 158
+ L+ + +G E + E+++ M++
Sbjct: 571 SGCYNTLIRARLRDGDREASAELIKEMRS 599
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/105 (18%), Positives = 52/105 (49%)
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243
AV ++ +++ P + ++ +++A ++ + + +MQ G YS ++
Sbjct: 65 AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 124
Query: 244 MYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ 288
+ + ++ A+ ++ KM G EPN+ +SL++ + +K + +
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 169
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 129/275 (46%), Gaps = 5/275 (1%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
++M G D Y ++ K GD++ L + E+ K++ ++ +Y + DSL
Sbjct: 207 DRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIE---ANVVIYSTVIDSL 263
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
K + L F +M+ KG+ + Y+SLI + A L + E+ + +L
Sbjct: 264 CKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNL 323
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
F L+ ++++G + K ++ E M ++ + ++NGF A ++ E
Sbjct: 324 VTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLEL 383
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
+I + C+P VTY ++IN +C+ K ++F EM Q+G V Y++++ + +
Sbjct: 384 MIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 443
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN 285
+A + +M G PN+ YN L+D G KN
Sbjct: 444 CDNAQMVFKQMVSVGVHPNILTYNILLD--GLCKN 476
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 127/286 (44%), Gaps = 17/286 (5%)
Query: 52 KLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEV 111
KL P + +L + R + + M E G D + +LI +
Sbjct: 141 KLGYEPDIVTLNSLL-NGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKA 199
Query: 112 KVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVI 171
A L ++G DL + +V + G + L ++ M+ A++ + I +
Sbjct: 200 SEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTV 259
Query: 172 VNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGF 231
++ K R A+ ++ ++ ++G P +TY+S+I+ C G +S A ++ +M ++
Sbjct: 260 IDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKI 319
Query: 232 DKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSL------MDMHGRAKN 285
+ +V +S+++ + K G++ A +L +M + +PN++ Y+SL +D G AK
Sbjct: 320 NPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQ 379
Query: 286 LRQLE----------KYTTVISAYNMAREFDMCVKFYNEFRMNGGV 321
+ +L Y T+I+ + A+ D ++ + E G V
Sbjct: 380 MLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLV 425
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 115/246 (46%), Gaps = 7/246 (2%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L+ + +M++ G+ + Y ++ G + L + RK++ + + L
Sbjct: 273 LNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKIN---PNLVTFSAL 329
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSV--YASLICSFASIAEVKVAEELFKEAEEK 124
D+ K G+ + K + +M ++ I DP++ Y+SLI F + + A+++ + K
Sbjct: 330 IDAFVKKGKLVKAEKLYEEMIKRSI--DPNIFTYSSLINGFCMLDRLGEAKQMLELMIRK 387
Query: 125 GMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184
L ++ + L+ + + V+K +E+ M L + +++GF + R A
Sbjct: 388 DCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA 447
Query: 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 244
V++Q++S G P +TY +++ C+ G +KA VF +Q+ + + Y+ M+
Sbjct: 448 QMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEG 507
Query: 245 YGKTGR 250
K G+
Sbjct: 508 MCKAGK 513
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 1/221 (0%)
Query: 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEE 116
PS K+L ++ K + ++ F M+ GI + Y LI F + + +A
Sbjct: 76 PSIIEFSKLL-SAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALA 134
Query: 117 LFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFS 176
L + + G D+ L+ + + + +V+ M +++G
Sbjct: 135 LLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLF 194
Query: 177 KRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVV 236
AV + ++++ +GC P VTY +++N C+ G A + +M+ + VV
Sbjct: 195 LHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVV 254
Query: 237 AYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
YS+++ K DA+ L +M+ KG PNV Y+SL+
Sbjct: 255 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLI 295
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 121/255 (47%)
Query: 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKE 120
H Y + +LG++ + EI K +M G + Y LI S+ +K A +F +
Sbjct: 360 HTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQ 419
Query: 121 AEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180
+E G D + L+ ++ + G ++ +++ + M+ A L+ VI+N K
Sbjct: 420 MQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGH 479
Query: 181 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSS 240
AA +++ +++ QGC P VT+ +I + + Y A K++ +MQ GF V YS
Sbjct: 480 LPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSI 539
Query: 241 MVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYN 300
++ + G G + +A + A+M+ K P+ +Y L+D+ G+A N+ + ++ +
Sbjct: 540 VMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAG 599
Query: 301 MAREFDMCVKFYNEF 315
+ C + F
Sbjct: 600 LRPNVPTCNSLLSTF 614
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 9/202 (4%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
Y++M+ AG+ D+ Y I+ K G LF CE TP+ + I+ +
Sbjct: 452 YQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLF--CEMVGQGCTPNLV-TFNIMI-A 507
Query: 70 LGKSGRAFEI-LKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR 128
L R +E LK +RDM+ G D Y+ ++ ++ AE +F E + K +
Sbjct: 508 LHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVP 567
Query: 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL--NISDCISCVIVNGFSKRRAYWAAVK 186
D V+ LV ++ + G V+K + ++M A L N+ C S +++ F + A
Sbjct: 568 DEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNS--LLSTFLRVHRMSEAYN 625
Query: 187 VYEQLISQGCIPGQVTYASIIN 208
+ + +++ G P TY +++
Sbjct: 626 LLQSMLALGLHPSLQTYTLLLS 647
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTH 61
N ++ L Y M++AG D Y +ME G E+ +F E + + + P
Sbjct: 514 NYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRK--NWVPDEP- 570
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
+Y +L D GK+G + ++++ M + G+ + SL+ +F + + A L +
Sbjct: 571 VYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSM 630
Query: 122 EEKGMLRDLEVFLKLV 137
G+ L+ + L+
Sbjct: 631 LALGLHPSLQTYTLLL 646
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 127/282 (45%), Gaps = 4/282 (1%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+ KMK + + ++ F K+G ++ V F + + Y I+ D
Sbjct: 215 FSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAG---ARPTVFTYNIMIDC 271
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
+ K G F +MK +G++ D Y S+I F + + F+E ++ D
Sbjct: 272 MCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPD 331
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+ + L+ + + G + LE MK L + +V+ F K A+K Y
Sbjct: 332 VITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYV 391
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
+ G +P + TY S+I+A C+IG S A ++ EM Q G + VV Y++++
Sbjct: 392 DMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAE 451
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL-RQLE 290
R+++A L KM G PN+ YN+L+ +AKN+ R LE
Sbjct: 452 RMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALE 493
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%)
Query: 78 EILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLV 137
E ++ F MK + L+ FA + + + FK+ G + + ++
Sbjct: 210 EAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMI 269
Query: 138 LMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCI 197
+EG VE + E MK L +++GF K V +E++ C
Sbjct: 270 DCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCE 329
Query: 198 PGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRL 257
P +TY ++IN +C+ G + + EM+ G VV+YS++V + K G ++ A++
Sbjct: 330 PDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 389
Query: 258 VAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286
M+ G PN + Y SL+D + + NL
Sbjct: 390 YVDMRRVGLVPNEYTYTSLIDANCKIGNL 418
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 133/291 (45%), Gaps = 7/291 (2%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L +Y +MK G+ + Y +++AF K G ++ +++ R++ L P+ + Y L
Sbjct: 352 LEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVD--MRRVGLVPNE-YTYTSL 408
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
D+ K G + + +M + G+ + Y +LI +K AEELF + + G+
Sbjct: 409 IDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGV 468
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186
+ +L + L+ +++ +++ LE++ +K + + + G AA
Sbjct: 469 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKV 528
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246
V ++ G + Y ++++AY + G ++ + EM++ + VV + ++
Sbjct: 529 VMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC 588
Query: 247 KTGRIRDAMRLVAKMKPK-GCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVI 296
K + A+ ++ G + N I+ +++D G K+ Q+E TT+
Sbjct: 589 KNKLVSKAVDYFNRISNDFGLQANAAIFTAMID--GLCKD-NQVEAATTLF 636
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 117/284 (41%), Gaps = 4/284 (1%)
Query: 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY 63
Q + +Y M+ G+V + Y +++A KIG+ L E ++ + Y
Sbjct: 384 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVT---Y 440
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
L D L + R E + F M G++ + + Y +LI F + A EL E +
Sbjct: 441 TALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKG 500
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183
+G+ DL ++ + +E V+ MK + + I +++ + K
Sbjct: 501 RGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTE 560
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK-GFDKCVVAYSSMV 242
+ + +++ VT+ +I+ C+ L SKA F + G +++M+
Sbjct: 561 GLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMI 620
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286
K ++ A L +M KG P+ Y SLMD + + N+
Sbjct: 621 DGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNV 664
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 125/274 (45%), Gaps = 8/274 (2%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESR--KLDLTPSSTHMYKILC 67
+ KM +AG++ + Y ++ F K + ++ L E + R K DL T ++ LC
Sbjct: 460 FGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWG-LC 518
Query: 68 DSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGML 127
SL K A ++ +MKE GI + +Y +L+ ++ L E +E +
Sbjct: 519 -SLEKIEAAKVVMN---EMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIE 574
Query: 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNA-ELNISDCISCVIVNGFSKRRAYWAAVK 186
+ F L+ + +V K ++ + N L + I +++G K AA
Sbjct: 575 VTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATT 634
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246
++EQ++ +G +P + Y S+++ + G +A + +M + G ++AY+S+V
Sbjct: 635 LFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLS 694
Query: 247 KTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMH 280
+++ A + +M +G P+ + S++ H
Sbjct: 695 HCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKH 728
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 103/219 (47%), Gaps = 8/219 (3%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
+MK GI +S Y +M+A++K G+ + L L E ++LD+ + + +L D L
Sbjct: 531 NEMKECGIKANSLIYTTLMDAYFKSGNPTE--GLHLLDEMKELDIEVTVV-TFCVLIDGL 587
Query: 71 GKSGRAFEILKFF-RDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
K+ + + +F R + G+ + +++ ++I +V+ A LF++ +KG++ D
Sbjct: 588 CKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 647
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+ L+ ++G V + L + + M + + +V G S A E
Sbjct: 648 RTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLE 707
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228
++I +G P +V S++ + +G +A +E+Q
Sbjct: 708 EMIGEGIHPDEVLCISVLKKHYELGCIDEA----VELQS 742
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 7 LHYYEKMKSA-GIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKI 65
+ Y+ ++ + G+ ++ + +++ K E LF + + L P T Y
Sbjct: 597 VDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL--VPDRT-AYTS 653
Query: 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKG 125
L D K G E L M E G+ D Y SL+ + +++ A +E +G
Sbjct: 654 LMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEG 713
Query: 126 MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISD 165
+ D + + ++ + E G +++ +E+ + +L SD
Sbjct: 714 IHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLLTSD 753
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 145/308 (47%), Gaps = 27/308 (8%)
Query: 6 KLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKI 65
KL Y + + G +L C +IGD+ + L + K P+ +Y
Sbjct: 134 KLGYEPSIVTFGSLLHGFCLVN------RIGDAFSLVILMV-----KSGYEPNVV-VYNT 181
Query: 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKG 125
L D L K+G L+ +M++KG+ D Y +L+ A + ++ ++
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS 241
Query: 126 MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAV 185
+ D+ F L+ +++++G +++ E+ + M + ++ ++ I+NG + A
Sbjct: 242 INPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAK 301
Query: 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245
K ++ + S+GC P VTY ++I+ +C+ + + K+F M +GF+ + Y++++ Y
Sbjct: 302 KTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGY 361
Query: 246 GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN------------LRQLEKYT 293
+ G++R A+ + M + P++ + L +HG N +R+ EKY
Sbjct: 362 CQVGKLRVALDIFCWMVSRRVTPDIITHCIL--LHGLCVNGEIESALVKFDDMRESEKYI 419
Query: 294 TVISAYNM 301
++ AYN+
Sbjct: 420 GIV-AYNI 426
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 2/230 (0%)
Query: 50 SRKLDLTPSSTHMYK--ILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFAS 107
S+K++L S +Y IL + R L M + G + SL+ F
Sbjct: 94 SQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCL 153
Query: 108 IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCI 167
+ + A L + G ++ V+ L+ + G + LE++ M+ L
Sbjct: 154 VNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVT 213
Query: 168 SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQ 227
++ G + A ++ ++ + P VT+ ++I+ + + G +A++++ EM
Sbjct: 214 YNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMI 273
Query: 228 QKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
Q D V Y+S++ GR+ DA + M KGC PNV YN+L+
Sbjct: 274 QSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLI 323
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 5/259 (1%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK 72
M I D + +++ F K G+ ++ L+ E +D P++ Y + + L
Sbjct: 237 MMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD--PNNV-TYNSIINGLCM 293
Query: 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV 132
GR ++ K F M KG + Y +LI F V +LF+ +G D+
Sbjct: 294 HGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFT 353
Query: 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192
+ L+ Y + G + L++ M + + C++++G +A+ ++ +
Sbjct: 354 YNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMR 413
Query: 193 SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR 252
G V Y +I+ C+ KA ++F + +G Y+ M+ K G R
Sbjct: 414 ESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRR 473
Query: 253 DAMRLVAKMKPKG--CEPN 269
+A L+ +MK +G C+ N
Sbjct: 474 EADELIRRMKEEGIICQMN 492
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 202 TYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM 261
++ +I+ +CR S A V +M + G++ +V + S++ + RI DA LV M
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167
Query: 262 KPKGCEPNVWIYNSLMDMHGRAKN 285
G EPNV +YN+L+D G KN
Sbjct: 168 VKSGYEPNVVVYNTLID--GLCKN 189
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/288 (18%), Positives = 111/288 (38%), Gaps = 38/288 (13%)
Query: 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFR 84
Y +++ K G+ L E E + L + Y L L SGR + + R
Sbjct: 179 YNTLIDGLCKNGELNIALELLNEMEKKGLG---ADVVTYNTLLTGLCYSGRWSDAARMLR 235
Query: 85 DMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA----------------------- 121
DM ++ I D + +LI F + A+EL+KE
Sbjct: 236 DMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHG 295
Query: 122 ------------EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISC 169
KG ++ + L+ + + MV++ +++ + M N
Sbjct: 296 RLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYN 355
Query: 170 VIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229
+++G+ + A+ ++ ++S+ P +T+ +++ C G A F +M++
Sbjct: 356 TLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRES 415
Query: 230 GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
+VAY+ M+ K ++ A L ++ +G +P+ Y ++
Sbjct: 416 EKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMI 463
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 147/294 (50%), Gaps = 12/294 (4%)
Query: 12 KMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL---CD 68
KMK GI + Y I+ F K G +E AA + E++++ T +++ KI+ C
Sbjct: 369 KMKEEGIEMSLVTYSVIVGGFSKAGHAE--AADYWFDEAKRIHKTLNASIYGKIIYAHCQ 426
Query: 69 SLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR 128
+ RA ++ R+M+E+GI ++Y +++ + +A+ K +FK +E G
Sbjct: 427 TCNME-RAEALV---REMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTP 482
Query: 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188
+ + L+ +Y + G + K LEV MK + + +++NGF K + + A V+
Sbjct: 483 TVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVF 542
Query: 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248
E ++ +G P + Y +II+A+C +G +A + EMQ+ + ++ Y K+
Sbjct: 543 EDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKS 602
Query: 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMA 302
G +R ++ + M+ GC P V +N L++ G + RQ+EK ++ +A
Sbjct: 603 GDMRRSLEVFDMMRRCGCVPTVHTFNGLIN--GLVEK-RQMEKAVEILDEMTLA 653
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 116/254 (45%), Gaps = 3/254 (1%)
Query: 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFF 83
+ I+ + K GD + +F R+ P+ H + L + L + + + ++
Sbjct: 591 TFMPIIHGYAKSGDMRRSLEVFDMM--RRCGCVPT-VHTFNGLINGLVEKRQMEKAVEIL 647
Query: 84 RDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEE 143
+M G+ + Y ++ +AS+ + A E F + +G+ D+ + L+ +
Sbjct: 648 DEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKS 707
Query: 144 GMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTY 203
G ++ L V + M + + + ++++G+++R W A + +Q+ +G P TY
Sbjct: 708 GRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTY 767
Query: 204 ASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263
S I+A + G ++A + EM+ G + Y++++ + + A+ +MK
Sbjct: 768 TSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKA 827
Query: 264 KGCEPNVWIYNSLM 277
G +P+ +Y+ L+
Sbjct: 828 MGIKPDKAVYHCLL 841
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/332 (20%), Positives = 147/332 (44%), Gaps = 23/332 (6%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLEC--ESRKLDLTPSSTHMYKILCDSL 70
MK G+ + Y ++ F K+ D A+F + E K D+ + ++ C +
Sbjct: 510 MKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYN-NIISAFC-GM 567
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
G RA + +K + ++ + + +I +A +++ + E+F G + +
Sbjct: 568 GNMDRAIQTVKEMQKLRHRPTTR---TFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTV 624
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
F L+ +E+ +EK +E+++ M A ++ ++ I+ G++ A + + +
Sbjct: 625 HTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTR 684
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
L ++G TY +++ A C+ G A V EM + + Y+ ++ + + G
Sbjct: 685 LQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGD 744
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLM-------DMHGRAKNLRQLE---------KYTT 294
+ +A L+ +MK +G +P++ Y S + DM+ + + ++E YTT
Sbjct: 745 VWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTT 804
Query: 295 VISAYNMAREFDMCVKFYNEFRMNGGVIDRAM 326
+I + A + + Y E + G D+A+
Sbjct: 805 LIKGWARASLPEKALSCYEEMKAMGIKPDKAV 836
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 117/251 (46%), Gaps = 4/251 (1%)
Query: 28 IMEAFY-KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDM 86
+M FY + GD + F +R +TP+S +Y L + E L R M
Sbjct: 314 LMVKFYGRRGDMHRARETFERMRAR--GITPTS-RIYTSLIHAYAVGRDMDEALSCVRKM 370
Query: 87 KEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMV 146
KE+GI Y+ ++ F+ + A+ F EA+ + ++ K++ + + +
Sbjct: 371 KEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNM 430
Query: 147 EKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASI 206
E+ +V M+ ++ I +++G++ + V+++L G P VTY +
Sbjct: 431 ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCL 490
Query: 207 INAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGC 266
IN Y ++G SKA +V M+++G + YS M+ + K +A + M +G
Sbjct: 491 INLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGM 550
Query: 267 EPNVWIYNSLM 277
+P+V +YN+++
Sbjct: 551 KPDVILYNNII 561
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 102/231 (44%), Gaps = 17/231 (7%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
++M AG+ + Y +IM+ + +GD+ K F ++ LD+ Y+ L +
Sbjct: 648 DEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDV---DIFTYEALLKAC 704
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
KSGR L ++M + I + VY LI +A +V A +L ++ +++G+ D+
Sbjct: 705 CKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDI 764
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
+ + + G + + + +E M+ + + ++ G+++ A+ YE+
Sbjct: 765 HTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEE 824
Query: 191 LISQGCIPGQVTY----------ASIINAYCRIGLYSKAEKVFIEMQQKGF 231
+ + G P + Y ASI AY +YS + EM + G
Sbjct: 825 MKAMGIKPDKAVYHCLLTSLLSRASIAEAY----IYSGVMTICKEMVEAGL 871
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
W AV + IS+ P + + ++ Y R G +A + F M+ +G Y+S+
Sbjct: 294 WQAVISAFEKISK---PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSL 350
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
+ Y + +A+ V KMK +G E ++ Y+ ++
Sbjct: 351 IHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIV 386
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 19/101 (18%)
Query: 241 MVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYN 300
MV YG+ G + A +M+ +G P IY SL I AY
Sbjct: 315 MVKFYGRRGDMHRARETFERMRARGITPTSRIYTSL-------------------IHAYA 355
Query: 301 MAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIE 341
+ R+ D + + + G + ++VG FSK E
Sbjct: 356 VGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAE 396
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 138/313 (44%), Gaps = 19/313 (6%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+ + G+ + Y ++ ++G ++ L L E + TP Y + +
Sbjct: 234 FREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELK--GYTPDVIS-YSTVVNG 290
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
+ G ++ K MK KG+ + +Y S+I I ++ AEE F E +G+L D
Sbjct: 291 YCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPD 350
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
V+ L+ + + G + + M + ++ I++GF + A K++
Sbjct: 351 TVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFH 410
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
++ +G P VT+ +IN YC+ G A +V M Q G VV Y++++ K G
Sbjct: 411 EMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 470
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK----------------YT 293
+ A L+ +M G +PN++ YNS+++ ++ N+ + K YT
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT 530
Query: 294 TVISAYNMAREFD 306
T++ AY + E D
Sbjct: 531 TLMDAYCKSGEMD 543
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 116/258 (44%), Gaps = 3/258 (1%)
Query: 58 SSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEEL 117
T +Y L D K G KFF +M + I D Y ++I F I ++ A +L
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408
Query: 118 FKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177
F E KG+ D F +L+ Y + G ++ V M A + + +++G K
Sbjct: 409 FHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 468
Query: 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA 237
+A ++ ++ G P TY SI+N C+ G +A K+ E + G + V
Sbjct: 469 EGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVT 528
Query: 238 YSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD---MHGRAKNLRQLEKYTT 294
Y++++ Y K+G + A ++ +M KG +P + +N LM+ +HG ++ +L +
Sbjct: 529 YTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML 588
Query: 295 VISAYNMAREFDMCVKFY 312
A F+ VK Y
Sbjct: 589 AKGIAPNATTFNSLVKQY 606
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 125/280 (44%), Gaps = 3/280 (1%)
Query: 9 YYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCD 68
++ +M S I D Y I+ F +IGD + LF E + L+ P S + L +
Sbjct: 373 FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLE--PDSV-TFTELIN 429
Query: 69 SLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR 128
K+G + + M + G + Y +LI ++ A EL E + G+
Sbjct: 430 GYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQP 489
Query: 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188
++ + +V + G +E+ +++V + A LN +++ + K A ++
Sbjct: 490 NIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 549
Query: 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248
++++ +G P VT+ ++N +C G+ EK+ M KG ++S+V Y
Sbjct: 550 KEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIR 609
Query: 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ 288
++ A + M +G P+ Y +L+ H +A+N+++
Sbjct: 610 NNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKE 649
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 122/275 (44%), Gaps = 3/275 (1%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+ M AG + Y +++ K GD + L E K+ L P+ Y + +
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM--WKIGLQPN-IFTYNSIVNG 500
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
L KSG E +K + + G+ D Y +L+ ++ E+ A+E+ KE KG+
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 560
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+ F L+ + GM+E +++ M + + +V + R AA +Y+
Sbjct: 561 IVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYK 620
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
+ S+G P TY +++ +C+ +A +F EM+ KGF V YS ++ + K
Sbjct: 621 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 680
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK 284
+ +A + +M+ +G + I++ D + K
Sbjct: 681 KFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGK 715
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 22/244 (9%)
Query: 93 EDPSVYASLICSFASIAEVKVAEELFKEAE-----EKGMLRDLEVFLKLVLMYIEEGMVE 147
+D V SLI SF ++ V + + + K D VF + ++ G++
Sbjct: 133 KDLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLR 192
Query: 148 KTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA-AVKVYEQLISQGCIPGQVTYASI 206
+ V E M N L +S V + SK A A+ V+ + G +Y +
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 252
Query: 207 INAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGC 266
I+ C++G +A + + M+ KG+ V++YS++V Y + G + +L+ MK KG
Sbjct: 253 IHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGL 312
Query: 267 EPNVWIYNSLMDMHGRAKNLRQLEK----------------YTTVISAYNMAREFDMCVK 310
+PN +IY S++ + R L + E+ YTT+I + + K
Sbjct: 313 KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 372
Query: 311 FYNE 314
F+ E
Sbjct: 373 FFYE 376
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 222 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHG 281
VF E + G V +Y+ ++ + GRI++A L+ M+ KG P+V
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVI---------- 282
Query: 282 RAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIE 341
Y+TV++ Y E D K + G + + G ++G+ ++ ++
Sbjct: 283 ---------SYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLA 333
Query: 342 E 342
E
Sbjct: 334 E 334
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 127/267 (47%), Gaps = 3/267 (1%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
+KM+ +G Y ++ + K G + L +S+ +D + Y +L L
Sbjct: 217 QKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVD---ADVCTYNMLIHDL 273
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
+S R + RDM+++ I + Y +LI F++ +V +A +L E G+ +
Sbjct: 274 CRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 333
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
F L+ +I EG ++ L++ M+ L S+ V+++G K + A Y +
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMR 393
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
+ G G++TY +I+ C+ G +A + EM + G D +V YS+++ + K GR
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGR 453
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLM 277
+ A +V ++ G PN IY++L+
Sbjct: 454 FKTAKEIVCRIYRVGLSPNGIIYSTLI 480
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 125/288 (43%), Gaps = 20/288 (6%)
Query: 55 LTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYA--SLICSFASIAEVK 112
L S+ +Y IL + G + L+ FR M G +PSVY +++ S E
Sbjct: 118 LCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGF--NPSVYTCNAILGSVVKSGEDV 175
Query: 113 VAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIV 172
KE ++ + D+ F L+ + EG EK+ +++ M+ + + ++
Sbjct: 176 SVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVL 235
Query: 173 NGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFD 232
+ + K+ + AA+++ + + S+G TY +I+ CR +K + +M+++
Sbjct: 236 HWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIH 295
Query: 233 KCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK- 291
V Y++++ + G++ A +L+ +M G PN +N+L+D H N ++ K
Sbjct: 296 PNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKM 355
Query: 292 ---------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDR 324
Y ++ EFD+ FY + NG + R
Sbjct: 356 FYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGR 403
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 125/289 (43%), Gaps = 5/289 (1%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
+M S G+ + + +++ G+ ++ +F E++ LTPS Y +L D L
Sbjct: 322 NEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAK--GLTPSEVS-YGVLLDGL 378
Query: 71 GKSGRAFEILK-FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
K+ F++ + F+ MK G+ Y +I + A L E + G+ D
Sbjct: 379 CKNAE-FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPD 437
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+ + L+ + + G + E+V + L+ + I ++ + A+++YE
Sbjct: 438 IVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYE 497
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
+I +G T+ ++ + C+ G ++AE+ M G V++ ++ YG +G
Sbjct: 498 AMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSG 557
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISA 298
A + +M G P + Y SL+ + +LR+ EK+ + A
Sbjct: 558 EGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHA 606
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 2/225 (0%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y + D L K+G E + +M + GI D Y++LI F + K A+E+
Sbjct: 406 YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIY 465
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCIS-CVIVNGFSKRRAY 181
G+ + ++ L+ G +++ + + E+M E + D + V+V K
Sbjct: 466 RVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMI-LEGHTRDHFTFNVLVTSLCKAGKV 524
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
A + + S G +P V++ +IN Y G KA VF EM + G Y S+
Sbjct: 525 AEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSL 584
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286
+ K G +R+A + + + + +YN+L+ ++ NL
Sbjct: 585 LKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNL 629
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 103/258 (39%), Gaps = 38/258 (14%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
+ +L SL K+G+ E +F R M GIL + + LI + + E A +F E
Sbjct: 511 FNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMT 570
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
+ G + L+ + G + + + ++S+ + + ++ K
Sbjct: 571 KVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLA 630
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIG------LYSKAEKV-------------F 223
AV ++ +++ + +P TY S+I+ CR G L++K + F
Sbjct: 631 KAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCF 690
Query: 224 I-----------------EMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGC 266
+ +M G +V ++M+ Y + G+I L+ +M +
Sbjct: 691 VDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNG 750
Query: 267 EPNVWIYNSLMDMHGRAK 284
PN+ YN L +HG +K
Sbjct: 751 GPNLTTYNIL--LHGYSK 766
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 116/286 (40%), Gaps = 38/286 (13%)
Query: 28 IMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMK 87
I+ + K G+ V + E RK+ + IL + L G + + M+
Sbjct: 164 ILGSVVKSGEDVSVWSFLKEMLKRKI---CPDVATFNILINVLCAEGSFEKSSYLMQKME 220
Query: 88 EKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVE 147
+ G Y +++ + K A EL + KG+ D+ + L+ +
Sbjct: 221 KSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIA 280
Query: 148 KTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASII 207
K ++ M+ ++ ++ ++NGFS A ++ +++S G P VT+ ++I
Sbjct: 281 KGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALI 340
Query: 208 NAYCRIGLYSKAEKVFIEMQQKG--------------------FD-------------KC 234
+ + G + +A K+F M+ KG FD C
Sbjct: 341 DGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVC 400
Query: 235 V--VAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
V + Y+ M+ K G + +A+ L+ +M G +P++ Y++L++
Sbjct: 401 VGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALIN 446
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 120/294 (40%), Gaps = 3/294 (1%)
Query: 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY 63
++ +++ E+M + G D +++ + ++G EK L E ++ + P+ T Y
Sbjct: 701 KAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQ--NGGPNLT-TY 757
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
IL K +R + GIL D SL+ +++ ++ K
Sbjct: 758 NILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFIC 817
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183
+G+ D F L+ G + ++V+ M + +++ +V+ ++ +
Sbjct: 818 RGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQE 877
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243
+ V ++ QG P Y +IN CR+G A V EM VA S+MV
Sbjct: 878 SRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVR 937
Query: 244 MYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVIS 297
K G+ +A L+ M P + + +LM + + N+ + + V+S
Sbjct: 938 ALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMS 991
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 97/253 (38%), Gaps = 38/253 (15%)
Query: 51 RKLDLTPSS--THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108
+ L P++ T MY L ++ KSG + + F +M ++ IL D Y SLI
Sbjct: 602 KSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRK 661
Query: 109 AEVKVAEELFKEAEEKGML------------------------------------RDLEV 132
+ +A KEAE +G + D+
Sbjct: 662 GKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVT 721
Query: 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192
++ Y G +EKT +++ M N + ++++G+SKR+ + +Y +I
Sbjct: 722 TNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSII 781
Query: 193 SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR 252
G +P ++T S++ C + K+ +G + ++ +++ G I
Sbjct: 782 LNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEIN 841
Query: 253 DAMRLVAKMKPKG 265
A LV M G
Sbjct: 842 WAFDLVKVMTSLG 854
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 85/217 (39%), Gaps = 40/217 (18%)
Query: 55 LTPSSTHMYKILCDS----LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE 110
+T + K CD+ L ++ R E +M ++GI + Y LI + +
Sbjct: 850 MTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGD 909
Query: 111 VKVA----EELFKE---------------------AEEKGMLRDLEVFLKLV-------- 137
+K A EE+ A+E +L + +KLV
Sbjct: 910 IKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTT 969
Query: 138 LMYI--EEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG 195
LM++ + G V + LE+ M N L + V++ G + A ++YE++ G
Sbjct: 970 LMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDG 1029
Query: 196 CIPGQVTYASIINA-YCRIGLYSKAEKVFIEMQQKGF 231
+ TY ++I R +S A+ + ++ +GF
Sbjct: 1030 FLANATTYKALIRGLLARETAFSGADIILKDLLARGF 1066
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 130/278 (46%), Gaps = 3/278 (1%)
Query: 9 YYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCD 68
+ +++ G+ D Y ++ A+ G E+ L + + Y + +
Sbjct: 257 FLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFS---PGVYTYNTVIN 313
Query: 69 SLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR 128
L K G+ + F +M G+ D + Y SL+ +V E++F + + ++
Sbjct: 314 GLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVP 373
Query: 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188
DL F ++ ++ G ++K L S+K A L + I +++ G+ ++ A+ +
Sbjct: 374 DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLR 433
Query: 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248
+++ QGC VTY +I++ C+ + +A+K+F EM ++ + ++ + K
Sbjct: 434 NEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKL 493
Query: 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286
G +++AM L KMK K +V YN+L+D G+ ++
Sbjct: 494 GNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDI 531
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 130/279 (46%), Gaps = 3/279 (1%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+ M+S +V D C+ +M F + G+ +K AL ++ L P + +Y IL
Sbjct: 363 FSDMRSRDVVPDLVCFSSMMSLFTRSGNLDK--ALMYFNSVKEAGLIPDNV-IYTILIQG 419
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
+ G + +M ++G D Y +++ + A++LF E E+ + D
Sbjct: 420 YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPD 479
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
L+ + + G ++ +E+ + MK + + +++GF K A +++
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
++S+ +P ++Y+ ++NA C G ++A +V+ EM K V+ +SM+ Y ++G
Sbjct: 540 DMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSG 599
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ 288
D + KM +G P+ YN+L+ R +N+ +
Sbjct: 600 NASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSK 638
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 132/291 (45%), Gaps = 5/291 (1%)
Query: 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTH 61
N L Y+ +K AG++ D+ Y +++ + + G L E + + +
Sbjct: 390 NLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVT-- 447
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
Y + L K E K F +M E+ + D LI + ++ A ELF++
Sbjct: 448 -YNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKM 506
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181
+EK + D+ + L+ + + G ++ E+ M + E+ + ++VN +
Sbjct: 507 KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
A +V++++IS+ P + S+I YCR G S E +M +GF ++Y+++
Sbjct: 567 AEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTL 626
Query: 242 VAMYGKTGRIRDAMRLVAKMKPK--GCEPNVWIYNSLMDMHGRAKNLRQLE 290
+ + + + A LV KM+ + G P+V+ YNS++ R +++ E
Sbjct: 627 IYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAE 677
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 108/232 (46%), Gaps = 5/232 (2%)
Query: 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTH 61
N Q+ + ++KMK I LD Y +++ F K+GD + ++ + S+++ TP S
Sbjct: 495 NLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPIS-- 552
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
Y IL ++L G E + + +M K I + S+I + E ++
Sbjct: 553 -YSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKM 611
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN-ISDCIS-CVIVNGFSKRR 179
+G + D + L+ ++ E + K +V+ M+ + + D + I++GF ++
Sbjct: 612 ISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQN 671
Query: 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGF 231
A V ++I +G P + TY +IN + ++A ++ EM Q+GF
Sbjct: 672 QMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGF 723
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 107/229 (46%)
Query: 58 SSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEEL 117
S+ ++ +L + ++ + E + F ++ KG +LI S I V++A +
Sbjct: 163 SNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGV 222
Query: 118 FKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177
++E G+ ++ +V ++G +EK + ++ + +++ +S
Sbjct: 223 YQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSS 282
Query: 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA 237
+ A ++ + +G PG TY ++IN C+ G Y +A++VF EM + G
Sbjct: 283 KGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTT 342
Query: 238 YSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286
Y S++ K G + + ++ + M+ + P++ ++S+M + R+ NL
Sbjct: 343 YRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNL 391
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 138/310 (44%), Gaps = 27/310 (8%)
Query: 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFR 84
Y ++EA + DS A+ L E R TP Y +L + + K GR E +KF
Sbjct: 242 YTILIEATCR--DSGVGHAMKLLDEMRDRGCTPDVV-TYNVLVNGICKEGRLDEAIKFLN 298
Query: 85 DMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144
DM G + + ++ S S AE+L + KG + F L+ +G
Sbjct: 299 DMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG 358
Query: 145 MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYA 204
++ + ++++E M + +++GF K + A++ E+++S+GC P VTY
Sbjct: 359 LLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYN 418
Query: 205 SIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264
+++ A C+ G A ++ ++ KG ++ Y++++ K G+ A++L+ +M+ K
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478
Query: 265 GCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEF-----RMNG 319
+P+ Y+SL + + + D +KF++EF R N
Sbjct: 479 DLKPDTITYSSL-------------------VGGLSREGKVDEAIKFFHEFERMGIRPNA 519
Query: 320 GVIDRAMAGI 329
+ M G+
Sbjct: 520 VTFNSIMLGL 529
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 118/278 (42%), Gaps = 12/278 (4%)
Query: 9 YYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALF--LECESRKLDLTPSSTHMYKIL 66
+ E M G V D ++ F ++G + K A + LE D+ Y ++
Sbjct: 124 FLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI-----TYNVM 178
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
K+G L M + D Y +++ S ++K A E+ ++
Sbjct: 179 ISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDC 235
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186
D+ + L+ + V +++++ M++ V+VNG K A+K
Sbjct: 236 YPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIK 295
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246
+ S GC P +T+ I+ + C G + AEK+ +M +KGF VV ++ ++
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355
Query: 247 KTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK 284
+ G + A+ ++ KM GC+PN YN L +HG K
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPL--LHGFCK 391
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 154/348 (44%), Gaps = 22/348 (6%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E ++ +G V D Y ++ + K G+ ++ L+ S D+ +T + + LCDS
Sbjct: 161 EILEGSGAVPDVITYNVMISGYCKAGEINNALSV-LDRMSVSPDVVTYNT-ILRSLCDS- 217
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
GK +A E+L M ++ D Y LI + + V A +L E ++G D+
Sbjct: 218 GKLKQAMEVLD---RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDV 274
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
+ LV +EG +++ ++ + M ++ + +I+ + A K+
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLAD 334
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
++ +G P VT+ +IN CR GL +A + +M Q G ++Y+ ++ + K +
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMDM---HGRAKN----LRQLEK---------YTT 294
+ A+ + +M +GC P++ YN+++ G+ ++ L QL Y T
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454
Query: 295 VISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
VI A + +K +E R D +VG S+ +++E
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 19/173 (10%)
Query: 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245
K E ++ G +P + ++I +CR+G KA K+ ++ G V+ Y+ M++ Y
Sbjct: 123 KFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGY 182
Query: 246 GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ----LEK---------- 291
K G I +A+ ++ +M P+V YN+++ + L+Q L++
Sbjct: 183 CKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDV 239
Query: 292 --YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
YT +I A +K +E R G D ++V K +++E
Sbjct: 240 ITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDE 292
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 38/227 (16%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
+ Y E+M S G D Y ++ A K G E + + S+ +P Y +
Sbjct: 399 IEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSK--GCSPVLI-TYNTV 455
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
D L K+G+ + +K +M+ K + D Y+SL+ + +V A + F E E G+
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGI 515
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186
+ F ++L G K R A+
Sbjct: 516 RPNAVTFNSIML-----------------------------------GLCKSRQTDRAID 540
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK 233
+I++GC P + +Y +I G+ +A ++ E+ KG K
Sbjct: 541 FLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMK 587
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/203 (18%), Positives = 83/203 (40%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y L K + +++ M +G D Y +++ + +V+ A E+ +
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLS 441
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
KG L + ++ + G K +++++ M+ +L +V G S+
Sbjct: 442 SKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVD 501
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
A+K + + G P VT+ SI+ C+ +A + M +G +Y+ ++
Sbjct: 502 EAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILI 561
Query: 243 AMYGKTGRIRDAMRLVAKMKPKG 265
G ++A+ L+ ++ KG
Sbjct: 562 EGLAYEGMAKEALELLNELCNKG 584
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 38/304 (12%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+EKMK+ D Y +++ F D + V + E E D + IL D+
Sbjct: 316 FEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEK---DGHVPDVVTFTILVDA 372
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
L K+G E M+++GIL + Y +LIC + + A ELF E G+
Sbjct: 373 LCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPT 432
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL--NISDCISCV----------------- 170
++ + Y + G LE E MK + NI C + +
Sbjct: 433 AYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFY 492
Query: 171 ----------------IVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIG 214
++ +SK A+K+ +++ GC P + S+IN +
Sbjct: 493 GLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKAD 552
Query: 215 LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYN 274
+A K+F+ M++ VV Y++++A GK G+I++A+ L M KGC PN +N
Sbjct: 553 RVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFN 612
Query: 275 SLMD 278
+L D
Sbjct: 613 TLFD 616
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 3/250 (1%)
Query: 28 IMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMK 87
++ K G+ + L+ + S + D +P++ Y L D L KSGR +E + F M
Sbjct: 861 VISGLVKAGNVDDALDLYYDLMSDR-DFSPTAC-TYGPLIDGLSKSGRLYEAKQLFEGML 918
Query: 88 EKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVE 147
+ G + ++Y LI F E A LFK ++G+ DL+ + LV G V+
Sbjct: 919 DYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVD 978
Query: 148 KTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQL-ISQGCIPGQVTYASI 206
+ L + +K + LN +I+NG K A+ ++ ++ S+G P TY S+
Sbjct: 979 EGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSL 1038
Query: 207 INAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGC 266
I G+ +A K++ E+Q+ G + V +++++ Y +G+ A + M G
Sbjct: 1039 ILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGF 1098
Query: 267 EPNVWIYNSL 276
PN Y L
Sbjct: 1099 SPNTGTYEQL 1108
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 121/258 (46%), Gaps = 7/258 (2%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKL--DLTPSSTHMYK 64
L + M+S G+ + Y ++ + K GDS F + +++ + ++ + +Y
Sbjct: 418 LELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLY- 476
Query: 65 ILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEK 124
SL K+GR E + F +K+ G++ D Y ++ ++ + E+ A +L E E
Sbjct: 477 ----SLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMEN 532
Query: 125 GMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184
G D+ V L+ + V++ ++ MK +L + ++ G K A
Sbjct: 533 GCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEA 592
Query: 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 244
++++E ++ +GC P +T+ ++ + C+ + A K+ +M G V Y++++
Sbjct: 593 IELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFG 652
Query: 245 YGKTGRIRDAMRLVAKMK 262
K G++++AM +MK
Sbjct: 653 LVKNGQVKEAMCFFHQMK 670
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 127/304 (41%), Gaps = 22/304 (7%)
Query: 58 SSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLIC--SFASIAEVKVAE 115
S Y L LGK ++ ++M+ G+ P+VY IC ++ A
Sbjct: 221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGL--KPNVYTFTICIRVLGRAGKINEAY 278
Query: 116 ELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGF 175
E+ K +++G D+ + L+ ++ EV E MK +++ F
Sbjct: 279 EILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRF 338
Query: 176 SKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCV 235
S R + + + ++ G +P VT+ +++A C+ G + +A M+ +G +
Sbjct: 339 SDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNL 398
Query: 236 VAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN----LRQLEK 291
Y++++ + R+ DA+ L M+ G +P + Y +D +G++ + L EK
Sbjct: 399 HTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK 458
Query: 292 YTTVISAYNM-------------AREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLS 338
T A N+ R+ + FY + G V D +M+ +SK+
Sbjct: 459 MKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYG-LKDIGLVPDSVTYNMMMKCYSKVG 517
Query: 339 QIEE 342
+I+E
Sbjct: 518 EIDE 521
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 108/240 (45%), Gaps = 4/240 (1%)
Query: 83 FRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142
F +K G + D + Y L+ ++ ++ EL+KE + ++ ++
Sbjct: 808 FLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVK 867
Query: 143 EGMVEKTLEVV-ESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQV 201
G V+ L++ + M + + + + C +++G SK + A +++E ++ GC P
Sbjct: 868 AGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCA 927
Query: 202 TYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM 261
Y +IN + + G A +F M ++G + YS +V GR+ + + ++
Sbjct: 928 IYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKEL 987
Query: 262 KPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGV 321
K G P+V YN +++ G++ +LE+ + + +R + YN +N G+
Sbjct: 988 KESGLNPDVVCYNLIINGLGKS---HRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGI 1044
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/305 (19%), Positives = 124/305 (40%), Gaps = 75/305 (24%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+ ++KS G + D Y +++A+ K G +++ L+ E + + + ++T + I+
Sbjct: 808 FLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECE---ANTITHNIVISG 864
Query: 70 LGKSGRAFEILKFFRD-MKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR 128
L K+G + L + D M ++ Y LI + + A++LF
Sbjct: 865 LVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLF---------- 914
Query: 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188
EGM++ ++ N +++NGF K AA ++
Sbjct: 915 --------------EGMLDYGCRPNCAIYN-----------ILINGFGKAGEADAACALF 949
Query: 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248
++++ +G P TY+ +++ C +G + F E+++ G + VV Y+ ++ GK+
Sbjct: 950 KRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKS 1009
Query: 249 GRIRDAMRLVAKMKPK------------------------------------GCEPNVWI 272
R+ +A+ L +MK G EPNV+
Sbjct: 1010 HRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFT 1069
Query: 273 YNSLM 277
+N+L+
Sbjct: 1070 FNALI 1074
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/371 (20%), Positives = 141/371 (38%), Gaps = 57/371 (15%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
+ Y +M G Y +M K D + V L E E+ L L P+ + + I
Sbjct: 208 MEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMET--LGLKPN-VYTFTIC 264
Query: 67 CDSLGKSGR---AFEILK--------------------------------FFRDMKEKGI 91
LG++G+ A+EILK F MK
Sbjct: 265 IRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH 324
Query: 92 LEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLE 151
D Y +L+ F+ ++ ++ + E E+ G + D+ F LV + G + +
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 152 VVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYC 211
++ M++ + + ++ G + A++++ + S G P TY I+ Y
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYG 444
Query: 212 RIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVW 271
+ G A + F +M+ KG +VA ++ + K GR R+A ++ +K G P+
Sbjct: 445 KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSV 504
Query: 272 IYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMV 331
YN +M Y+ E D +K +E NG D + ++
Sbjct: 505 TYNMMM-------------------KCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLI 545
Query: 332 GVFSKLSQIEE 342
K +++E
Sbjct: 546 NTLYKADRVDE 556
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 19 VLDSGC------YCQIMEAFYKIGDSEKVAALF--LECESRKLDLTPSSTHMYKILCDSL 70
+LD GC Y ++ F K G+++ ALF + E + DL Y +L D L
Sbjct: 917 MLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL-----KTYSVLVDCL 971
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE-EKGMLRD 129
GR E L +F+++KE G+ D Y +I ++ A LF E + +G+ D
Sbjct: 972 CMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPD 1031
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
L + L+L GMVE+ ++ ++ A L + ++ G+S A VY+
Sbjct: 1032 LYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQ 1091
Query: 190 QLISQGCIPGQVTYASIIN 208
+++ G P TY + N
Sbjct: 1092 TMVTGGFSPNTGTYEQLPN 1110
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/349 (20%), Positives = 134/349 (38%), Gaps = 75/349 (21%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLE-----CES----------------- 50
+K G+V DS Y +M+ + K+G+ ++ L E CE
Sbjct: 494 LKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADR 553
Query: 51 -----------RKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYA 99
+++ L P+ Y L LGK+G+ E ++ F M +KG + +
Sbjct: 554 VDEAWKMFMRMKEMKLKPTVV-TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFN 612
Query: 100 SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNA 159
+L EV +A ++ + + G + D+ + ++ ++ G V++ + MK
Sbjct: 613 TLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK-- 670
Query: 160 ELNISDCIS-CVIVNGFSKR----------------------RAYW-------------- 182
+L D ++ C ++ G K +W
Sbjct: 671 KLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGID 730
Query: 183 AAVKVYEQLISQG-CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK-GFDKCVVAYSS 240
AV E+L++ G C G II C+ S A +F + + G + Y+
Sbjct: 731 NAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNL 790
Query: 241 MVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQL 289
++ + I A + ++K GC P+V YN L+D +G++ + +L
Sbjct: 791 LIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDEL 839
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 52/225 (23%)
Query: 170 VIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIE---- 225
+++ G + A V+ Q+ S GCIP TY +++AY + G + +++ E
Sbjct: 790 LLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTH 849
Query: 226 --------------------------------MQQKGFDKCVVAYSSMVAMYGKTGRIRD 253
M + F Y ++ K+GR+ +
Sbjct: 850 ECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYE 909
Query: 254 AMRLVAKMKPKGCEPNVWIYNSLMDMHGRA---------------KNLR-QLEKYTTVIS 297
A +L M GC PN IYN L++ G+A + +R L+ Y+ ++
Sbjct: 910 AKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVD 969
Query: 298 AYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
M D + ++ E + +G D +++ K ++EE
Sbjct: 970 CLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEE 1014
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 105/280 (37%), Gaps = 40/280 (14%)
Query: 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEE 116
P +T + L D L K+ LK M + G + D Y ++I +VK A
Sbjct: 605 PPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMC 664
Query: 117 LFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESM------KNAELNISDCISCV 170
F + + K + D L+ ++ ++E +++ + + A L D I +
Sbjct: 665 FFHQMK-KLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSI 723
Query: 171 ----------------IVNGFS---------------KRRAYWAAVKVYEQLISQ-GCIP 198
+ NG K A ++E+ G P
Sbjct: 724 LAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQP 783
Query: 199 GQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLV 258
TY +I + A+ VF++++ G V Y+ ++ YGK+G+I + L
Sbjct: 784 KLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELY 843
Query: 259 AKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ-LEKYTTVIS 297
+M CE N +N ++ +A N+ L+ Y ++S
Sbjct: 844 KEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMS 883
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 39/151 (25%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
LHY++++K +G+ D CY ++
Sbjct: 981 LHYFKELKESGLNPDVVCY--------------------------------------NLI 1002
Query: 67 CDSLGKSGRAFEILKFFRDMK-EKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKG 125
+ LGKS R E L F +MK +GI D Y SLI + V+ A +++ E + G
Sbjct: 1003 INGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAG 1062
Query: 126 MLRDLEVFLKLVLMYIEEGMVEKTLEVVESM 156
+ ++ F L+ Y G E V ++M
Sbjct: 1063 LEPNVFTFNALIRGYSLSGKPEHAYAVYQTM 1093
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 132/279 (47%), Gaps = 10/279 (3%)
Query: 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHM 62
+ S + +++MK + Y ++ ++K+G EK LF E ++ +P+ +
Sbjct: 249 NDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM--KRAGCSPT-VYT 305
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y L LGK+GR E F++DM G+ D +L+ + V EEL
Sbjct: 306 YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV---EELTNVFS 362
Query: 123 EKGMLRDLEVFLK----LVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR 178
E GM R + + ++ + V + + MK ++ S+ ++++G+ K
Sbjct: 363 EMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKT 422
Query: 179 RAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAY 238
A+ + E++ +G P Y S+INA + Y A ++F E+++ + Y
Sbjct: 423 NRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVY 482
Query: 239 SSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
+ M+ +GK G++ +A+ L +MK +G P+V+ YN+LM
Sbjct: 483 AVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALM 521
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 126/260 (48%), Gaps = 17/260 (6%)
Query: 4 QSKLH------YYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTP 57
+SK H +++KMK+ + Y +++ + K EK L E + + P
Sbjct: 385 ESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCP 444
Query: 58 SSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEEL 117
++ Y L ++LGK+ R + F+++KE VYA +I F ++ A +L
Sbjct: 445 AA---YCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDL 501
Query: 118 FKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMK----NAELNISDCISCVIVN 173
F E + +G D+ + L+ ++ GM+ + ++ M+ A++N + +I+N
Sbjct: 502 FNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHN----IILN 557
Query: 174 GFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK 233
GF++ A++++E + G P VTY +++ + G++ +A ++ EM+ KGF+
Sbjct: 558 GFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEY 617
Query: 234 CVVAYSSMVAMYGKTGRIRD 253
+ YSS++ G +D
Sbjct: 618 DAITYSSILDAVGNVDHEKD 637
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 103/230 (44%)
Query: 52 KLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEV 111
K D S Y IL D K+ R + L +M EKG P+ Y SLI +
Sbjct: 401 KADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRY 460
Query: 112 KVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVI 171
+ A ELFKE +E V+ ++ + + G + + +++ MKN +
Sbjct: 461 EAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL 520
Query: 172 VNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGF 231
++G K A + ++ GC ++ I+N + R G+ +A ++F ++ G
Sbjct: 521 MSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGI 580
Query: 232 DKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHG 281
V Y++++ + G +A R++ +MK KG E + Y+S++D G
Sbjct: 581 KPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVG 630
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 157/350 (44%), Gaps = 21/350 (6%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E +++ + + ++++A + K ++F + + RK T SST+ IL L
Sbjct: 151 EVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPT-SSTYNSVILM--L 207
Query: 71 GKSGRAFEILKFFRDMKEKG-ILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
+ G+ ++ + + +M +G D Y++LI S+ + A LF E ++ M
Sbjct: 208 MQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPT 267
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+++ L+ +Y + G VEK L++ E MK A + + ++ G K A Y+
Sbjct: 268 EKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYK 327
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV-AMYGKT 248
++ G P V +++N ++G + VF EM VV+Y++++ A++
Sbjct: 328 DMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESK 387
Query: 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRA----KNLRQLEK------------Y 292
+ + KMK P+ + Y+ L+D + + K L LE+ Y
Sbjct: 388 AHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAY 447
Query: 293 TTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
++I+A A+ ++ + + E + N G + + +M+ F K ++ E
Sbjct: 448 CSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSE 497
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 119/272 (43%), Gaps = 32/272 (11%)
Query: 80 LKFFR-DMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL------EV 132
++FF+ K + D S Y +LI + E ++ E+++ +E ++R+ V
Sbjct: 110 IQFFKWAGKRRNFQHDCSTYMTLI---RCLEEARLYGEMYRTIQE--VVRNTYVSVSPAV 164
Query: 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192
+LV MV K L V K + + ++ + + +VY ++
Sbjct: 165 LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMC 224
Query: 193 SQG-CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI 251
++G C P +TY+++I++Y ++G A ++F EM+ Y++++ +Y K G++
Sbjct: 225 NEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284
Query: 252 RDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKF 311
A+ L +MK GC P V+ Y L+ G+A + D F
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV-------------------DEAYGF 325
Query: 312 YNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343
Y + +G D ++ + K+ ++EEL
Sbjct: 326 YKDMLRDGLTPDVVFLNNLMNILGKVGRVEEL 357
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 122/259 (47%), Gaps = 1/259 (0%)
Query: 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKE 120
H Y + +LG++ + I K +M G + Y LI S+ + A +F +
Sbjct: 365 HTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQ 424
Query: 121 AEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180
+E G D + L+ ++ + G ++ +++ + M+ L+ VI+N K
Sbjct: 425 MQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGH 484
Query: 181 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSS 240
AA K++ +++ QGC P VTY +++ + + Y A K++ +MQ GF+ V YS
Sbjct: 485 LPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSI 544
Query: 241 MVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYN 300
++ + G G + +A + +M+ K P+ +Y L+D+ G+A N+ + ++ +
Sbjct: 545 VMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAG 604
Query: 301 MAREFDMCVKFYNEF-RMN 318
+ C + F R+N
Sbjct: 605 LRPNVPTCNSLLSTFLRVN 623
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243
A+ V+ Q+ GC P +VTY ++I+ + + G A ++ MQ G YS ++
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477
Query: 244 MYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK------------ 291
GK G + A +L +M +GC PN+ YN +MD+H +A+N + K
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537
Query: 292 ----YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
Y+ V+ + + E + + D + G++V ++ K +E+
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEK 592
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 101/239 (42%), Gaps = 42/239 (17%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
++ + +M+ AG D YC +++ K G + ++ ++ L T Y ++
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS---PDTFTYSVI 475
Query: 67 CDSLGKSG----------------------------------RAFE-ILKFFRDMKEKGI 91
+ LGK+G R ++ LK +RDM+ G
Sbjct: 476 INCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGF 535
Query: 92 LEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLE 151
D Y+ ++ ++ AE +F E ++K + D V+ LV ++ + G VEK +
Sbjct: 536 EPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQ 595
Query: 152 VVESMKNAEL--NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIIN 208
++M +A L N+ C S +++ F + A ++ + +++ G P TY +++
Sbjct: 596 WYQAMLHAGLRPNVPTCNS--LLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLS 652
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTH 61
N Q+ L Y M++AG D Y +ME G E+ A+F E + + + P
Sbjct: 519 NYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK--NWIPDEP- 575
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
+Y +L D GK+G + ++++ M G+ + SL+ +F + ++ A EL +
Sbjct: 576 VYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635
Query: 122 EEKGMLRDLEVFLKLV 137
G+ L+ + L+
Sbjct: 636 LALGLRPSLQTYTLLL 651
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 133/322 (41%), Gaps = 3/322 (0%)
Query: 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTH 61
N L E M G+V Y +++ KI E +L +E +S + L H
Sbjct: 257 NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSL---DNH 313
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
Y +L D L K A +M GI P +Y IC + ++ A+ LF
Sbjct: 314 TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM 373
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181
G++ + + L+ Y E V + E++ MK + IS +V G
Sbjct: 374 IASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDL 433
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
A + +++I+ GC P V Y ++I + + + A +V EM+++G + Y+S+
Sbjct: 434 DGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSL 493
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNM 301
+ K R+ +A + +M G +PN + Y + + + A +KY + +
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV 553
Query: 302 AREFDMCVKFYNEFRMNGGVID 323
+C NE+ G VI+
Sbjct: 554 LPNKVLCTGLINEYCKKGKVIE 575
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 127/296 (42%), Gaps = 16/296 (5%)
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
+Y L + ++ R + ++ ++MKE+GI D Y SLI + + A E
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181
E G+ + + + YIE + V+ M+ + + + ++N + K+
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKV 573
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
A Y ++ QG + TY ++N + AE++F EM+ KG V +Y +
Sbjct: 574 IEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVL 633
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------- 291
+ + K G ++ A + +M +G PNV IYN L+ R+ + + ++
Sbjct: 634 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGL 693
Query: 292 ------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIE 341
Y T+I Y + + + ++E ++ G V D + +V +L+ +E
Sbjct: 694 HPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVE 749
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 139/295 (47%), Gaps = 23/295 (7%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y +L + L K+ + + + FR+M+ KGI D Y LI F+ + ++ A +F E
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
E+G+ ++ ++ L+ + G +EK E+++ M L+ + C I++G+ K
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLA 714
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
A ++++++ +G +P Y ++++ CR+ +A +F +KG +++++
Sbjct: 715 EAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASSTAPFNALI 773
Query: 243 AM---YGKTGRIRDAM-RLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL-------RQLEK 291
+GKT + + RL+ + +PN YN ++D + NL Q++
Sbjct: 774 NWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833
Query: 292 ---------YTTVISAYN-MAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSK 336
YT++++ Y+ M R +M ++E G D M +++ F K
Sbjct: 834 ANLMPTVITYTSLLNGYDKMGRRAEM-FPVFDEAIAAGIEPDHIMYSVIINAFLK 887
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 13/299 (4%)
Query: 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTH 61
N Q +++M G+ + Y ++ F + G+ EK L E + L P++
Sbjct: 642 NMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH--PNAV- 698
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
Y + D KSG E + F +MK KG++ D VY +L+ + +V+ A +F
Sbjct: 699 TYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG-T 757
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN----ISDCISCVIVNGFSK 177
+KG F L+ + G E EV+ + + + +D ++++ K
Sbjct: 758 NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817
Query: 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA 237
AA +++ Q+ + +P +TY S++N Y ++G ++ VF E G + +
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 238 YSSMVAMYGKTGRIRDAMRLVAKMKPK-----GCEPNVWIYNSLMDMHGRAKNLRQLEK 291
YS ++ + K G A+ LV +M K GC+ ++ +L+ + + EK
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEK 936
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/411 (21%), Positives = 158/411 (38%), Gaps = 116/411 (28%)
Query: 43 ALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLI 102
A+F+ S L+L P + K+L D+L + R ++ M E+ ++ D Y LI
Sbjct: 170 AVFVFSSSMGLELVPRLSRC-KVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLI 228
Query: 103 CSFASIAEVKVAEE-LFK-EAEEKGMLRDLEVFLKLVLMYIEEGMVE------------- 147
+ V++ ++ LFK E E + +++ LKL I +G+V
Sbjct: 229 IAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLC 288
Query: 148 --KTLEVVESM--------------------------KNAE-------------LNIS-- 164
K LE +S+ +NA+ +NI
Sbjct: 289 KIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPY 348
Query: 165 --DCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKV 222
DC CV+ SK A +++ +I+ G IP YAS+I YCR + ++
Sbjct: 349 MYDCCICVM----SKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYEL 404
Query: 223 FIEMQQK-----------------------------------GFDKCVVAYSSMVAMYGK 247
+EM+++ G VV Y++++ + +
Sbjct: 405 LVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ 464
Query: 248 TGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------- 291
R DAMR++ +MK +G P+++ YNSL+ +AK + +
Sbjct: 465 NSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFT 524
Query: 292 YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
Y IS Y A EF K+ E R G + ++ + ++ + K ++ E
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 44/244 (18%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALF------------------------ 45
+++MK G+V DS Y +++ ++ D E+ +F
Sbjct: 720 FDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKF 779
Query: 46 ------LECESRKLD-----LTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILED 94
E +R +D + Y I+ D L K G + F M+ ++
Sbjct: 780 GKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPT 839
Query: 95 PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVE 154
Y SL+ + + +F EA G+ D ++ ++ +++EGM K L +V+
Sbjct: 840 VITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVD 899
Query: 155 SM--KNA-----ELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASII 207
M KNA +L+IS C + +++GF+K A KV E ++ IP T +I
Sbjct: 900 QMFAKNAVDDGCKLSISTCRA--LLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELI 957
Query: 208 NAYC 211
N C
Sbjct: 958 NESC 961
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 159/359 (44%), Gaps = 23/359 (6%)
Query: 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTH 61
N L ++KM++ G + + Y +++ + K+ K+ F S L +
Sbjct: 220 NIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL---RKIDDGFKLLRSMALKGLEPNLI 276
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
Y ++ + L + GR E+ +M +G D Y +LI + A + E
Sbjct: 277 SYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181
G+ + + L+ + G + + +E ++ M+ L ++ +V+GFS++
Sbjct: 337 LRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYM 396
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
A +V ++ G P VTY ++IN +C G A V +M++KG VV+YS++
Sbjct: 397 NEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTV 456
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLE----------- 290
++ + ++ + +A+R+ +M KG +P+ Y+SL + G + R E
Sbjct: 457 LSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSL--IQGFCEQRRTKEACDLYEEMLRV 514
Query: 291 -------KYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
YT +I+AY M + + ++ +NE G + D +++ +K S+ E
Sbjct: 515 GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 132/303 (43%), Gaps = 40/303 (13%)
Query: 12 KMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLG 71
+M G LD Y +++ + K G+ + AL + E + LTPS Y L S+
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQ--ALVMHAEMLRHGLTPSVI-TYTSLIHSMC 356
Query: 72 KSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLE 131
K+G ++F M+ +G+ + Y +L+ F+ + A + +E + G +
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416
Query: 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCIS----------------------- 168
+ L+ + G +E + V+E MK L+ D +S
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLS-PDVVSYSTVLSGFCRSYDVDEALRVKRE 475
Query: 169 -------------CVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGL 215
++ GF ++R A +YE+++ G P + TY ++INAYC G
Sbjct: 476 MVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGD 535
Query: 216 YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNS 275
KA ++ EM +KG VV YS ++ K R R+A RL+ K+ + P+ Y++
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHT 595
Query: 276 LMD 278
L++
Sbjct: 596 LIE 598
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 105/218 (48%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y IL +G L F M+ KG L + Y +LI + + ++ +L +
Sbjct: 208 YNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMA 267
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
KG+ +L + ++ EG +++ V+ M ++ + ++ G+ K +
Sbjct: 268 LKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFH 327
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
A+ ++ +++ G P +TY S+I++ C+ G ++A + +M+ +G Y+++V
Sbjct: 328 QALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLV 387
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMH 280
+ + G + +A R++ +M G P+V YN+L++ H
Sbjct: 388 DGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH 425
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 89/189 (47%), Gaps = 16/189 (8%)
Query: 170 VIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229
+++ GF A+ +++++ ++GC+P VTY ++I+ YC++ K+ M K
Sbjct: 210 ILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALK 269
Query: 230 GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ- 288
G + +++Y+ ++ + GR+++ ++ +M +G + YN+L+ + + N Q
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329
Query: 289 ---------------LEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGV 333
+ YT++I + A + ++F ++ R+ G + +V
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG 389
Query: 334 FSKLSQIEE 342
FS+ + E
Sbjct: 390 FSQKGYMNE 398
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 116/276 (42%), Gaps = 27/276 (9%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E MK G+ D Y ++ F + D ++ AL ++ E + + P T Y L
Sbjct: 439 EDMKEKGLSPDVVSYSTVLSGFCRSYDVDE--ALRVKREMVEKGIKPD-TITYSSLIQGF 495
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
+ R E + +M G+ D Y +LI ++ +++ A +L E EKG+L D+
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 131 EVF------------------LKLVLMYIEEGMVEKTLE-VVESMKNAELNISDCISCVI 171
+ L L L Y E + T ++E+ N E +S +
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEF--KSVVS--L 611
Query: 172 VNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGF 231
+ GF + A +V+E ++ + P Y +I+ +CR G KA ++ EM + GF
Sbjct: 612 IKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGF 671
Query: 232 DKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCE 267
V ++V K G++ + ++ + + CE
Sbjct: 672 LLHTVTVIALVKALHKEGKVNELNSVIVHVL-RSCE 706
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 176 SKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCV 235
SKR +A V+++++ P TY +I +C G A +F +M+ KG V
Sbjct: 182 SKRNISFAE-NVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNV 240
Query: 236 VAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
V Y++++ Y K +I D +L+ M KG EPN+ YN +++
Sbjct: 241 VTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 3/270 (1%)
Query: 9 YYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCD 68
+Y ++ AG L+ + +M F K G+ +F E R L T S + L +
Sbjct: 227 FYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVS---FNTLIN 283
Query: 69 SLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR 128
K G E + M++ D Y++LI + ++ A LF E ++G++
Sbjct: 284 GYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIP 343
Query: 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188
+ +F L+ + G ++ E + M + L + +VNGF K AA +
Sbjct: 344 NDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIV 403
Query: 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248
+ +I +G P ++TY ++I+ +CR G A ++ EM Q G + V +S++V K
Sbjct: 404 DGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKE 463
Query: 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
GR+ DA R + +M G +P+ Y +MD
Sbjct: 464 GRVIDAERALREMLRAGIKPDDVTYTMMMD 493
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 118/278 (42%), Gaps = 6/278 (2%)
Query: 8 HYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILC 67
H EK ++ V Y ++ A K + LF E R L P+ ++ L
Sbjct: 299 HQMEKSRTRPDVF---TYSALINALCKENKMDGAHGLFDEMCKRGL--IPNDV-IFTTLI 352
Query: 68 DSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGML 127
++G + + ++ M KG+ D +Y +L+ F ++ A + +G+
Sbjct: 353 HGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLR 412
Query: 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKV 187
D + L+ + G VE LE+ + M + + +V G K A +
Sbjct: 413 PDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERA 472
Query: 188 YEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 247
+++ G P VTY +++A+C+ G K+ EMQ G VV Y+ ++ K
Sbjct: 473 LREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCK 532
Query: 248 TGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN 285
G++++A L+ M G P+ YN+L++ H R N
Sbjct: 533 LGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHAN 570
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 95/213 (44%)
Query: 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKG 125
L D + K I F+ ++ + G + V+ L+ F + A+++F E ++
Sbjct: 211 LLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRS 270
Query: 126 MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAV 185
+ + F L+ Y + G +++ + M+ + ++N K A
Sbjct: 271 LQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAH 330
Query: 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245
+++++ +G IP V + ++I+ + R G ++ + +M KG +V Y+++V +
Sbjct: 331 GLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGF 390
Query: 246 GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
K G + A +V M +G P+ Y +L+D
Sbjct: 391 CKNGDLVAARNIVDGMIRRGLRPDKITYTTLID 423
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 104/233 (44%), Gaps = 6/233 (2%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
Y+KM S G+ D Y ++ F K GD VAA + + L P Y L D
Sbjct: 368 YQKMLSKGLQPDIVLYNTLVNGFCKNGD--LVAARNIVDGMIRRGLRPDKI-TYTTLIDG 424
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
+ G L+ ++M + GI D +++L+C V AE +E G+ D
Sbjct: 425 FCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPD 484
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+ ++ + ++G + ++++ M++ S V++NG K A + +
Sbjct: 485 DVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLD 544
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
+++ G +P +TY +++ + R ++ + K +I+ + G + +Y S+V
Sbjct: 545 AMLNIGVVPDDITYNTLLEGHHR---HANSSKRYIQKPEIGIVADLASYKSIV 594
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 170 VIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229
+++N F K A KV++++ + P V++ ++IN YC++G + ++ +M++
Sbjct: 245 ILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKS 304
Query: 230 GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN 285
V YS+++ K ++ A L +M +G PN I+ +L +HG ++N
Sbjct: 305 RTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTL--IHGHSRN 358
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 188 YEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 247
Y +++ G + ++N +C+ G S A+KVF E+ ++ VV++++++ Y K
Sbjct: 228 YMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCK 287
Query: 248 TGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD-------MHGRAKNLRQLEK--------- 291
G + + RL +M+ P+V+ Y++L++ M G ++ K
Sbjct: 288 VGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVI 347
Query: 292 YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSK 336
+TT+I ++ E D+ + Y + G D + +V F K
Sbjct: 348 FTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCK 392
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 107/282 (37%), Gaps = 50/282 (17%)
Query: 35 IGDSEKVAAL----FLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKG 90
I DS K L F +C S + L S H L + S I FF K
Sbjct: 53 IRDSYKDPPLEFSSFTDCPSIRKVLPSLSVHHVVDLINHNPLSLPQRSIFAFF-----KF 107
Query: 91 ILEDPSVYASLICSFASIAEVKVAEELFKEAE--------EKGMLRDLEVFLKLVLMYIE 142
I P ++ F +A E+F EA+ KG VF+ LV M +
Sbjct: 108 ISSQPGFRFTVETYFV-LARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVT 166
Query: 143 E--GMVEKTLEVVESMKNAELN-ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPG 199
G + L + + +L I D I C F R + V + +GC
Sbjct: 167 PMCGFLVDALMITYT----DLGFIPDAIQC-----FRLSRKHRFDVPI------RGC--- 208
Query: 200 QVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVA 259
++++ ++ ++E+ GF V ++ ++ + K G I DA ++
Sbjct: 209 ----GNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFD 264
Query: 260 KMKPKGCEPNVWIYNSLMDMHGRAKNL-------RQLEKYTT 294
++ + +P V +N+L++ + + NL Q+EK T
Sbjct: 265 EITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRT 306
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 148/334 (44%), Gaps = 34/334 (10%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKL--DLTPSST--HMYKI 65
+++M+ + D Y ++ +F K G + + + E ++ DL S + +
Sbjct: 178 FDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRR 237
Query: 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKG 125
LCD +A I F +K GI D Y S+I + + A L KE E G
Sbjct: 238 LCDY----SKAISI---FSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAG 290
Query: 126 MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMK--NAELNISDCISCVIVNGFSKRRAYWA 183
+L + + L+ +Y+E + L V MK N L+++ C ++++ + +
Sbjct: 291 VLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTC--NIMIDVYGQLDMVKE 348
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243
A +++ L P V+Y +I+ Y L+ +A +F MQ+K ++ VV Y++M+
Sbjct: 349 ADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIK 408
Query: 244 MYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAR 303
+YGKT A LV +M+ +G EPN Y+T+IS + A
Sbjct: 409 IYGKTMEHEKATNLVQEMQSRGIEPNAIT-------------------YSTIISIWGKAG 449
Query: 304 EFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKL 337
+ D + + R +G ID+ + M+ + ++
Sbjct: 450 KLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERV 483
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/292 (19%), Positives = 128/292 (43%), Gaps = 36/292 (12%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
+H + M+ I + Y +++ + K + EK L E +SR ++ P++ Y +
Sbjct: 385 IHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIE--PNAI-TYSTI 441
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIA----------EVKVAEE 116
GK+G+ F+ ++ G+ D +Y ++I ++ + E+K+ +
Sbjct: 442 ISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDN 501
Query: 117 L---------------------FKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVES 155
+ F++A E G ++D+ VF ++ +Y +EV E
Sbjct: 502 IPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEK 561
Query: 156 MKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCI-PGQVTYASIINAYCRIG 214
M+ A + +++N + K+R + A VY ++ +GC+ P +V + +++ Y
Sbjct: 562 MRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHF-QMLSLYSSKK 620
Query: 215 LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGC 266
+ E +F ++ + + A+Y + ++ DA R++ +M+ +G
Sbjct: 621 DFEMVESLFQRLESDPNVNSKELHLVVAALYERADKLNDASRVMNRMRERGI 672
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 91/189 (48%), Gaps = 16/189 (8%)
Query: 170 VIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229
V++ + + + A +++++ + P + TY+++I ++ + G++ A +M+Q
Sbjct: 160 VVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQD 219
Query: 230 GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQL 289
+V YS+++ + + A+ + +++K G P++ YNS+++++G+AK R+
Sbjct: 220 RVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREA 279
Query: 290 E----------------KYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGV 333
Y+T++S Y +F + + E + +D IM+ V
Sbjct: 280 RLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDV 339
Query: 334 FSKLSQIEE 342
+ +L ++E
Sbjct: 340 YGQLDMVKE 348
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/354 (17%), Positives = 151/354 (42%), Gaps = 33/354 (9%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLEC-----ESRKLDLTPSSTHMYK 64
+ ++K +GI D Y ++ + K A LF E E + + P++ Y
Sbjct: 248 FSRLKRSGITPDLVAYNSMINVYGK-------AKLFREARLLIKEMNEAGVLPNTVS-YS 299
Query: 65 ILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEK 124
L ++ + E L F +MKE D + +I + + VK A+ LF +
Sbjct: 300 TLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKM 359
Query: 125 GMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184
+ ++ + ++ +Y E + + + + M+ ++ + ++ + K + A
Sbjct: 360 DIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKA 419
Query: 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 244
+ +++ S+G P +TY++II+ + + G +A +F +++ G + V Y +M+
Sbjct: 420 TNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 479
Query: 245 YGKTGRIRDAMRLVAKMK-----PK-----------GCEPNVWIYNSLMDMHGRAKNLRQ 288
Y + G + A RL+ ++K P+ E W++ + + ++
Sbjct: 480 YERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFE----SGEVKD 535
Query: 289 LEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
+ + +I+ Y+ + + ++ + + R G D + +++ + K + E+
Sbjct: 536 ISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEK 589
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 128/271 (47%), Gaps = 6/271 (2%)
Query: 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFR 84
Y ++ K GD + L + E+ K++ ++ +Y + DSL K + L F
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIE---ANVVIYSTVIDSLCKYRHEDDALNLFT 284
Query: 85 DMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144
+M+ KG+ + Y+SLI + A L + E+ + ++ F L+ +++EG
Sbjct: 285 EMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEG 344
Query: 145 MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYA 204
+ + ++ + M ++ ++NGF A ++E +IS+ C P VTY
Sbjct: 345 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN 404
Query: 205 SIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264
++IN +C+ + ++F EM Q+G V Y++++ + + +A + +M
Sbjct: 405 TLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSD 464
Query: 265 GCEPNVWIYNSLMDMHGRAKNLRQLEKYTTV 295
G PN+ YN+L+D G KN +LEK V
Sbjct: 465 GVHPNIMTYNTLLD--GLCKN-GKLEKAMVV 492
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 125/271 (46%), Gaps = 3/271 (1%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L+ + +M++ G+ + Y ++ + L + RK++ + + L
Sbjct: 280 LNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKIN---PNVVTFNAL 336
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
D+ K G+ E K + +M ++ I D Y+SLI F + A+ +F+ K
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186
++ + L+ + + +++ +E+ M L + +++GF + R A
Sbjct: 397 FPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 456
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246
V++Q++S G P +TY ++++ C+ G KA VF +Q+ + + Y+ M+
Sbjct: 457 VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 516
Query: 247 KTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
K G++ D L + KG +P+V IYN+++
Sbjct: 517 KAGKVEDGWDLFCSLSLKGVKPDVIIYNTMI 547
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 149/327 (45%), Gaps = 19/327 (5%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
EKM+ GI + Y ++ F + S+ AL L + KL PS + +L +
Sbjct: 109 EKMQRLGISHNLYTYNILINCFCR--RSQISLALALLGKMMKLGYEPSIVTLSSLL-NGY 165
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
R + + M E G D + +LI + A L ++G +L
Sbjct: 166 CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 225
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
+ +V + G ++ ++ M+ A++ + I +++ K R A+ ++ +
Sbjct: 226 VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTE 285
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
+ ++G P +TY+S+I+ C +S A ++ +M ++ + VV +++++ + K G+
Sbjct: 286 MENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGK 345
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMD---MHGR---AKNLRQLE----------KYTT 294
+ +A +L +M + +P+++ Y+SL++ MH R AK++ +L Y T
Sbjct: 346 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 405
Query: 295 VISAYNMAREFDMCVKFYNEFRMNGGV 321
+I+ + A+ D V+ + E G V
Sbjct: 406 LINGFCKAKRIDEGVELFREMSQRGLV 432
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 84/168 (50%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y L + K+ R E ++ FR+M ++G++ + Y +LI F + A+ +FK+
Sbjct: 403 YNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 462
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
G+ ++ + L+ + G +EK + V E ++ +++ + +++ G K
Sbjct: 463 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 522
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230
++ L +G P + Y ++I+ +CR GL +A+ +F +M++ G
Sbjct: 523 DGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 2/186 (1%)
Query: 95 PSVY--ASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEV 152
PS++ L+ + A + + + L ++ + G+ +L + L+ + + L +
Sbjct: 83 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142
Query: 153 VESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 212
+ M S ++NG+ + AV + +Q++ G P +T+ ++I+
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 213 IGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWI 272
S+A + M Q+G +V Y +V K G I A L+ KM+ E NV I
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262
Query: 273 YNSLMD 278
Y++++D
Sbjct: 263 YSTVID 268
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 134/284 (47%), Gaps = 5/284 (1%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+E++K+ V D+ Y ++ K G + + LF + + L T Y I+ D
Sbjct: 540 FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVL---DTRAYNIVIDG 596
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
K G+ + + +MK KG Y S+I A I + A LF+EA+ K + +
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELN 656
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+ ++ L+ + + G +++ ++E + L + +++ K A+ ++
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQ 716
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
+ C P QVTY +IN C++ ++KA + EMQ++G ++Y++M++ K G
Sbjct: 717 SMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAG 776
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYT 293
I +A L + K G P+ YN++++ G + R ++ ++
Sbjct: 777 NIAEAGALFDRFKANGGVPDSACYNAMIE--GLSNGNRAMDAFS 818
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 158/352 (44%), Gaps = 25/352 (7%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIG---DSEKVAALFLECESRKLDLTPSSTHMYKIL 66
+E+M D +C +++ K+G D+ KV L+ + R +++ +Y L
Sbjct: 435 FEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCR------TNSIVYTSL 488
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
+ GR + K ++DM + D + + + E + +F+E + +
Sbjct: 489 IKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRF 548
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186
+ D + L+ I+ G +T E+ SMK + ++++GF K A +
Sbjct: 549 VPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQ 608
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246
+ E++ ++G P VTY S+I+ +I +A +F E + K + VV YSS++ +G
Sbjct: 609 LLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668
Query: 247 KTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRA----------KNLRQLE------ 290
K GRI +A ++ ++ KG PN++ +NSL+D +A +++++L+
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQV 728
Query: 291 KYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
Y +I+ R+F+ F+ E + G M+ +K I E
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAE 780
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 106/211 (50%), Gaps = 3/211 (1%)
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
C K +++++ R K + S Y +LI +F+++ + LF++ +E G
Sbjct: 143 CVKANKLREGYDVVQMMRKFKFRPAF---SAYTTLIGAFSAVNHSDMMLTLFQQMQELGY 199
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186
+ +F L+ + +EG V+ L +++ MK++ L+ + V ++ F K A K
Sbjct: 200 EPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWK 259
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246
+ ++ + G P +VTY S+I C+ +A ++F +++ C AY++M+ YG
Sbjct: 260 FFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYG 319
Query: 247 KTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
G+ +A L+ + + KG P+V YN ++
Sbjct: 320 SAGKFDEAYSLLERQRAKGSIPSVIAYNCIL 350
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 114/253 (45%), Gaps = 3/253 (1%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK 72
MK G VLD+ Y +++ F K G K L E +++ + T + Y + D L K
Sbjct: 578 MKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVT---YGSVIDGLAK 634
Query: 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV 132
R E F + K K I + +Y+SLI F + + A + +E +KG+ +L
Sbjct: 635 IDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYT 694
Query: 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192
+ L+ ++ + + L +SMK + + +++NG K R + A ++++
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ 754
Query: 193 SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR 252
QG P ++Y ++I+ + G ++A +F + G Y++M+ R
Sbjct: 755 KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAM 814
Query: 253 DAMRLVAKMKPKG 265
DA L + + +G
Sbjct: 815 DAFSLFEETRRRG 827
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 6/283 (2%)
Query: 1 TNSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSST 60
+S L +++M+ G + ++ F K G + +L E +S LD +
Sbjct: 182 NHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLD---ADI 238
Query: 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKE 120
+Y + DS GK G+ KFF +++ G+ D Y S+I + A E+F+
Sbjct: 239 VLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEH 298
Query: 121 AEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCIS-CVIVNGFSKRR 179
E+ + + +++ Y G ++ ++E + A+ +I I+ I+ K
Sbjct: 299 LEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQR-AKGSIPSVIAYNCILTCLRKMG 357
Query: 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYS 239
A+KV+E++ + P TY +I+ CR G A ++ MQ+ G V +
Sbjct: 358 KVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVN 416
Query: 240 SMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGR 282
MV K+ ++ +A + +M K C P+ + SL+D G+
Sbjct: 417 IMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 134/320 (41%), Gaps = 47/320 (14%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E+ ++ G + Y I+ K+G ++ +F E K D P+ + Y IL D L
Sbjct: 332 ERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVF---EEMKKDAAPNLS-TYNILIDML 387
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
++G+ + M++ G+ + ++ ++ A +F+E + K D
Sbjct: 388 CRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDE 447
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
F L+ + G V+ +V E M +++ + + ++ F K+Y+
Sbjct: 448 ITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKD 507
Query: 191 LISQGC-----------------------------------IPGQVTYASIINAYCRIGL 215
+I+Q C +P +Y+ +I+ + G
Sbjct: 508 MINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGF 567
Query: 216 YSKAEKVFIEMQQKGFDKCVV---AYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWI 272
++ ++F M+++G CV+ AY+ ++ + K G++ A +L+ +MK KG EP V
Sbjct: 568 ANETYELFYSMKEQG---CVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVT 624
Query: 273 YNSLMDMHGRAKNLRQLEKY 292
Y S++D G AK R E Y
Sbjct: 625 YGSVID--GLAKIDRLDEAY 642
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/284 (18%), Positives = 113/284 (39%), Gaps = 18/284 (6%)
Query: 75 RAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFL 134
RA E +++ E + P Y SL+ A +++ E G + +
Sbjct: 80 RAIEYFRWYERRTE--LPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCI 137
Query: 135 KLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194
++VL ++ + + +VV+ M+ + + ++ FS + +++Q+
Sbjct: 138 EMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQEL 197
Query: 195 GCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDA 254
G P + ++I + + G A + EM+ D +V Y+ + +GK G++ A
Sbjct: 198 GYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMA 257
Query: 255 MRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL-------RQLEK---------YTTVISA 298
+ +++ G +P+ Y S++ + +A L LEK Y T+I
Sbjct: 258 WKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMG 317
Query: 299 YNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
Y A +FD R G + ++ K+ +++E
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDE 361
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 130/285 (45%), Gaps = 6/285 (2%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E+M G D Y ++ K G+ + L + E K++ + +Y + DSL
Sbjct: 194 ERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE---ADVVIYSTVIDSL 250
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
K + L F +M KGI D Y+SLI + A L + E+ + ++
Sbjct: 251 CKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNV 310
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
F L+ + +EG + + ++ + M ++ + ++NGF A +++
Sbjct: 311 VTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTL 370
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
++S+ C+P VTY ++IN +C+ ++F +M ++G V Y++++ + +
Sbjct: 371 MVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASD 430
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTV 295
+A + +M G PN+ YN+L+D G KN +LEK V
Sbjct: 431 CDNAQMVFKQMVSDGVHPNIMTYNTLLD--GLCKN-GKLEKAMVV 472
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 9/292 (3%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L+ + +M + GI D Y ++ G + L + RK++ + + L
Sbjct: 260 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKIN---PNVVTFNSL 316
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSV--YASLICSFASIAEVKVAEELFKEAEEK 124
D+ K G+ E K F +M ++ I DP++ Y SLI F + A+++F K
Sbjct: 317 IDAFAKEGKLIEAEKLFDEMIQRSI--DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 374
Query: 125 GMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184
L D+ + L+ + + V +E+ M L + +++GF + A
Sbjct: 375 DCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNA 434
Query: 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 244
V++Q++S G P +TY ++++ C+ G KA VF +Q+ + + Y+ M
Sbjct: 435 QMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEG 494
Query: 245 YGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVI 296
K G++ D L + KG +P+V YN+++ G K + E YT I
Sbjct: 495 MCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMIS--GFCKKGLKEEAYTLFI 544
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 115/249 (46%), Gaps = 6/249 (2%)
Query: 52 KLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEV 111
KL PS + +L + R E + M E G D + +L+ +
Sbjct: 128 KLGYGPSIVTLNSLL-NGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKA 186
Query: 112 KVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVI 171
A L + KG DL + ++ + G + L ++ M+ ++ I +
Sbjct: 187 SEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTV 246
Query: 172 VNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGF 231
++ K R A+ ++ ++ ++G P TY+S+I+ C G +S A ++ +M ++
Sbjct: 247 IDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI 306
Query: 232 DKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD---MHGRAKNLRQ 288
+ VV ++S++ + K G++ +A +L +M + +PN+ YNSL++ MH R +Q
Sbjct: 307 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 366
Query: 289 LEKYTTVIS 297
+ +T ++S
Sbjct: 367 I--FTLMVS 373
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 69/149 (46%), Gaps = 3/149 (2%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+++M S G+ + Y +++ K G EK +F + K++ + Y I+ +
Sbjct: 438 FKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME---PDIYTYNIMSEG 494
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
+ K+G+ + F + KG+ D Y ++I F + A LF + +E G L D
Sbjct: 495 MCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPD 554
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKN 158
+ L+ ++ +G + E+++ M++
Sbjct: 555 SGTYNTLIRAHLRDGDKAASAELIKEMRS 583
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 2/224 (0%)
Query: 55 LTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVA 114
++P + +Y +L L K+GR F +M ++ IL D VYA+LI F + A
Sbjct: 446 VSPDAA-IYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEA 504
Query: 115 EELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG 174
++F + EKG+ D+ ++ + GM+++ L + M L I++G
Sbjct: 505 RKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDG 564
Query: 175 FSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC 234
+ K++ A+K++ + C P VTY S+IN +C G + AE+ F EMQ +
Sbjct: 565 YVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPN 624
Query: 235 VVAYSSMVAMYGK-TGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
VV Y++++ K + + A+ M C PN +N L+
Sbjct: 625 VVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLL 668
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 134/271 (49%), Gaps = 16/271 (5%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y IL + L K G+ + F + +KG++ + YA LI ++ E +A +L +
Sbjct: 348 YNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMA 407
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
E+G D+ + L+ + G ++ + + + + ++ I ++++G K +
Sbjct: 408 ERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFL 467
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
A ++ +++ + +P YA++I+ + R G + +A KVF +KG VV +++M+
Sbjct: 468 PAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMI 527
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL-------RQLEK---- 291
+ ++G + +A+ + +M + P+ + Y++++D + + +++ R +EK
Sbjct: 528 KGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCK 587
Query: 292 -----YTTVISAYNMAREFDMCVKFYNEFRM 317
YT++I+ + +F M + + E ++
Sbjct: 588 PNVVTYTSLINGFCCQGDFKMAEETFKEMQL 618
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 113/278 (40%), Gaps = 20/278 (7%)
Query: 83 FRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142
F+++K KG + + ++I F + ++ L E +E+G+ + ++
Sbjct: 263 FKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYR 322
Query: 143 EGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVT 202
G E + + + +++N K AV ++ +G IP ++
Sbjct: 323 HGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLS 382
Query: 203 YASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262
YA +I AYC+ Y A K+ ++M ++G +V Y ++ +G + DA+ + K+
Sbjct: 383 YAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLI 442
Query: 263 PKGCEPNVWIYNSLMDMHGRAKNLRQLEK------------------YTTVISAYNMARE 304
+G P+ IYN LM G K R L Y T+I + + +
Sbjct: 443 DRGVSPDAAIYNMLMS--GLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGD 500
Query: 305 FDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
FD K ++ G +D M+ F + ++E
Sbjct: 501 FDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDE 538
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%)
Query: 168 SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQ 227
+C++V G K+ E +GCIP V Y +II YC++G A VF E++
Sbjct: 208 TCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELK 267
Query: 228 QKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGR 282
KGF + + +M+ + K G + RL++++K +G +VW N+++D R
Sbjct: 268 LKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYR 322
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 130/302 (43%), Gaps = 27/302 (8%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGD---SEKVAALFLECESRKLDLTPSSTHMYKIL 66
+ +M I+ D+ Y +++ F + GD + KV +L +E + K+D+ + M K
Sbjct: 473 FSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVE-KGVKVDVVHHNA-MIKGF 530
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
C +SG E L M E+ ++ D Y+++I + ++ A ++F+ E+
Sbjct: 531 C----RSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKC 586
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW-AAV 185
++ + L+ + +G + E + M+ +L + ++ +K + AV
Sbjct: 587 KPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAV 646
Query: 186 KVYEQLISQGCIPGQVTYASIINAYCR--------------IGLYSKAEKVFIEMQQKGF 231
+E +++ C+P +VT+ ++ + + G S + F M+ G+
Sbjct: 647 YYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDGW 706
Query: 232 DKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD---MHGRAKNLRQ 288
AY+S + G ++ A KM KG P+ + +++ + G +K R
Sbjct: 707 SDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAILHGFCVVGNSKQWRN 766
Query: 289 LE 290
++
Sbjct: 767 MD 768
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 118/222 (53%), Gaps = 1/222 (0%)
Query: 65 ILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEK 124
+L +SL K + K F+ M + G++ + VY L+ + + + + AE+L E EEK
Sbjct: 173 VLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEK 232
Query: 125 GMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184
G+ D+ + L+ +Y ++ M + L V + M+ + + + ++GFS+ A
Sbjct: 233 GVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREA 292
Query: 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 244
+++ + I VTY ++I+ YCR+ +A ++ M+ +GF VV Y+S++
Sbjct: 293 TRLFRE-IKDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRK 351
Query: 245 YGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286
+ GRIR+A RL+ +M K EP+ N+L++ + + +++
Sbjct: 352 LCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDM 393
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 92/196 (46%), Gaps = 15/196 (7%)
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
VF L++ Y + GM+ ++ V E +++ L V++N K+R K++++
Sbjct: 134 HVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKK 193
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
++ G + Y +++A + G KAEK+ EM++KG + Y++++++Y K
Sbjct: 194 MVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSM 253
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTV 295
+A+ + +M+ G PN+ YNS + R +R+ + YTT+
Sbjct: 254 HFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTTL 313
Query: 296 ISAYNMAREFDMCVKF 311
I Y + D ++
Sbjct: 314 IDGYCRMNDIDEALRL 329
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 126/301 (41%), Gaps = 35/301 (11%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKL--DLTPSSTHM----- 62
++KM G+V + Y ++ A K GD EK L E E + + D+ +T +
Sbjct: 191 FKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCK 250
Query: 63 -------------------------YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSV 97
Y + GR E + FR++K+ + +
Sbjct: 251 KSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDD-VTANHVT 309
Query: 98 YASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMK 157
Y +LI + + ++ A L + E +G + + ++ E+G + + ++ M
Sbjct: 310 YTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMS 369
Query: 158 NAELNISDCISC-VIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLY 216
++ D I+C ++N + K +AVKV +++I G +Y ++I+ +C++
Sbjct: 370 GKKIE-PDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLEL 428
Query: 217 SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSL 276
A++ M +KGF YS +V + + + +L+ + + +G +V +Y L
Sbjct: 429 ENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGL 488
Query: 277 M 277
+
Sbjct: 489 I 489
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 108/228 (47%), Gaps = 9/228 (3%)
Query: 90 GILEDP----SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM 145
G+ EDP V++ L+ +A + + +F++ G+ L+ L+ +++ +
Sbjct: 124 GVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRL 183
Query: 146 VEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYAS 205
+ ++ + M + + + V+V+ SK A K+ ++ +G P TY +
Sbjct: 184 TDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNT 243
Query: 206 IINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG 265
+I+ YC+ ++ +A V M++ G +V Y+S + + + GR+R+A RL ++K
Sbjct: 244 LISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDV 303
Query: 266 CEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYN 313
+V Y +L+D + R ++ + + V+ +R F V YN
Sbjct: 304 TANHV-TYTTLIDGYCRMNDIDEALRLREVME----SRGFSPGVVTYN 346
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 108/252 (42%), Gaps = 3/252 (1%)
Query: 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFR 84
Y +++ + ++ D ++ L ESR +P Y + L + GR E +
Sbjct: 310 YTTLIDGYCRMNDIDEALRLREVMESR--GFSPGVV-TYNSILRKLCEDGRIREANRLLT 366
Query: 85 DMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144
+M K I D +LI ++ I ++ A ++ K+ E G+ D+ + L+ + +
Sbjct: 367 EMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVL 426
Query: 145 MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYA 204
+E E + SM + +V+GF + K+ E+ +G Y
Sbjct: 427 ELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYR 486
Query: 205 SIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264
+I C++ A+ +F M++KG V +++M Y +TG++ +A L M +
Sbjct: 487 GLIRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNR 546
Query: 265 GCEPNVWIYNSL 276
N+ +Y S+
Sbjct: 547 RLMVNLKLYKSI 558
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 9/180 (5%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAA-LFLECESRKLDLTPSSTHMYKILCDS 69
+KM +G+ LD Y ++ F K+ + E LF E +P Y L D
Sbjct: 401 KKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEK---GFSPGYA-TYSWLVDG 456
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
+ EI K + +++G+ D ++Y LI + +V A+ LF+ E+KG++ D
Sbjct: 457 FYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGD 516
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS----DCISCVIVNGFSKRRAYWAAV 185
+F + Y G V + + + M N L ++ IS R +W+ V
Sbjct: 517 SVIFTTMAYAYWRTGKVTEASALFDVMYNRRLMVNLKLYKSISASYAGDNDVLRFFWSHV 576
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 124/275 (45%), Gaps = 5/275 (1%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
++M G D Y ++ K GD + +L + E K++ + +Y + D L
Sbjct: 212 DQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE---ADVVIYNTIIDGL 268
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
K + L F +M KGI D Y+SLI + A L + E+ + ++
Sbjct: 269 CKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNV 328
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
F L+ +++EG + + ++ + M ++ ++NGF A ++E
Sbjct: 329 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 388
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
+IS+ C P VTY+++I +C+ + ++F EM Q+G V Y++++ + +
Sbjct: 389 MISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 448
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN 285
+A + +M G PN+ YN L+D G KN
Sbjct: 449 CDNAQMVFKQMVSVGVHPNILTYNILLD--GLCKN 481
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 123/271 (45%), Gaps = 3/271 (1%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L+ + +M + GI D Y ++ G + L + RK++ + + L
Sbjct: 278 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKIN---PNVVTFSAL 334
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
D+ K G+ E K + +M ++ I D Y+SLI F + A+ +F+ K
Sbjct: 335 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 394
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186
++ + L+ + + VE+ +E+ M L + +++GF + R A
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 454
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246
V++Q++S G P +TY +++ C+ G +KA VF +Q+ + + Y+ M+
Sbjct: 455 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMC 514
Query: 247 KTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
K G++ D L + KG PNV YN+++
Sbjct: 515 KAGKVEDGWELFCNLSLKGVSPNVIAYNTMI 545
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 151/327 (46%), Gaps = 19/327 (5%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E+M++ GI D Y + F + S+ AL + + KL P + +L +
Sbjct: 107 EQMQTLGISHDLYTYSIFINCFCR--RSQLSLALAVLAKMMKLGYEPDIVTLSSLL-NGY 163
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
S R + + M E G D + +LI + A L + ++G DL
Sbjct: 164 CHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDL 223
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
+ +V + G ++ L +++ M+ ++ I I++G K + A+ ++ +
Sbjct: 224 VTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE 283
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
+ ++G P TY+S+I+ C G +S A ++ +M ++ + VV +S+++ + K G+
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMD---MHGR---AKNLRQLE----------KYTT 294
+ +A +L +M + +P+++ Y+SL++ MH R AK++ +L Y+T
Sbjct: 344 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYST 403
Query: 295 VISAYNMAREFDMCVKFYNEFRMNGGV 321
+I + A+ + ++ + E G V
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLV 430
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 3/253 (1%)
Query: 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFR 84
+ +++AF K G + L+ E R +D Y L + R E F
Sbjct: 331 FSALIDAFVKEGKLVEAEKLYDEMIKRSID---PDIFTYSSLINGFCMHDRLDEAKHMFE 387
Query: 85 DMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144
M K + Y++LI F V+ ELF+E ++G++ + + L+ + +
Sbjct: 388 LMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 447
Query: 145 MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYA 204
+ V + M + ++ + ++++G K A+ V+E L P TY
Sbjct: 448 DCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYN 507
Query: 205 SIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264
+I C+ G ++F + KG V+AY++M++ + + G +A L+ KMK
Sbjct: 508 IMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKED 567
Query: 265 GCEPNVWIYNSLM 277
G PN YN+L+
Sbjct: 568 GPLPNSGTYNTLI 580
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 171 IVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230
+++ +K + + + EQ+ + G TY+ IN +CR S A V +M + G
Sbjct: 89 LLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLG 148
Query: 231 FDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHG 281
++ +V SS++ Y + RI DA+ LV +M G +P+ + + +L +HG
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTL--IHG 197
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/149 (19%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+++M S G+ + Y +++ K G K +F + ++ + Y I+ +
Sbjct: 456 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME---PDIYTYNIMIEG 512
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
+ K+G+ + + F ++ KG+ + Y ++I F + A+ L K+ +E G L +
Sbjct: 513 MCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPN 572
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKN 158
+ L+ + +G E + E+++ M++
Sbjct: 573 SGTYNTLIRARLRDGDREASAELIKEMRS 601
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 50/103 (48%)
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243
AV ++ ++ P V + +++A ++ + + +MQ G + YS +
Sbjct: 67 AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126
Query: 244 MYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286
+ + ++ A+ ++AKM G EP++ +SL++ + +K +
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRI 169
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 116/251 (46%), Gaps = 18/251 (7%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y + DSL K+ R + FF++++ KGI + Y +L+ + + A L +
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
+K + ++ + L+ +++ G V + E+ E M ++ ++NG
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
A ++++ ++S+GC+ V+Y ++IN +C+ K+F EM Q+G V Y++++
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM-----------------DMHGRAKN 285
+ + G + A ++M G P++W YN L+ DM R +
Sbjct: 373 QGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMD 432
Query: 286 LRQLEKYTTVI 296
L + YTTVI
Sbjct: 433 L-DIVTYTTVI 442
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 1/223 (0%)
Query: 55 LTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVA 114
+TP+ Y L D+ K+G+ E + F +M I D Y+SLI + A
Sbjct: 256 ITPNVIT-YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEA 314
Query: 115 EELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG 174
++F KG L D+ + L+ + + VE +++ M L + ++ G
Sbjct: 315 NQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQG 374
Query: 175 FSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC 234
F + A + + Q+ G P TY ++ C G KA +F +MQ++ D
Sbjct: 375 FFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 434
Query: 235 VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
+V Y++++ KTG++ +A L + KG +P++ Y ++M
Sbjct: 435 IVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMM 477
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 8/208 (3%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y L + K+ R + +K FR+M ++G++ + Y +LI F +V A+E F + +
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
G+ D+ + L+ + G +EK L + E M+ E+++ ++ G K
Sbjct: 393 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVE 452
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
A ++ L +G P VTY ++++ C GL + E ++ +M+Q+G K S
Sbjct: 453 EAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSD-- 510
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNV 270
G I + L+ KM G P++
Sbjct: 511 ------GDITLSAELIKKMLSCGYAPSL 532
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 118/293 (40%), Gaps = 51/293 (17%)
Query: 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKG 125
L + + R + + M E G D Y ++I S V A + FKE E KG
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220
Query: 126 MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAV 185
+ ++ + LV NG + A
Sbjct: 221 IRPNVVTYTALV-----------------------------------NGLCNSSRWSDAA 245
Query: 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245
++ +I + P +TY+++++A+ + G +A+++F EM + D +V YSS++
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL 305
Query: 246 GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL-------RQLEK------- 291
RI +A ++ M KGC +V YN+L++ +AK + R++ +
Sbjct: 306 CLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNT 365
Query: 292 --YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
Y T+I + A + D +F+++ G D I++G ++E+
Sbjct: 366 VTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEK 418
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%)
Query: 170 VIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229
+++N F A+ + +++ G P +VT S++N +CR S A + +M +
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 230 GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
G+ +VAY++++ KT R+ DA +++ KG PNV Y +L++
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVN 233
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 73/163 (44%), Gaps = 3/163 (1%)
Query: 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY 63
+ + + +M G+V ++ Y +++ F++ GD +K F + + ++P Y
Sbjct: 347 EDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF--FGISP-DIWTY 403
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
IL L +G + L F DM+++ + D Y ++I +V+ A LF
Sbjct: 404 NILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSL 463
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDC 166
KG+ D+ + ++ +G++ + + MK L +DC
Sbjct: 464 KGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDC 506
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 202 TYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM 261
T+ +IN +C S A + +M + G++ V S+V + + R+ DA+ LV KM
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181
Query: 262 KPKGCEPNVWIYNSLMDMHGRAKNLRQ 288
G +P++ YN+++D + K +
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVND 208
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 151/348 (43%), Gaps = 23/348 (6%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E MK + V+ Y M+ F K D EK LF E R + ++T I C
Sbjct: 167 ETMKPSREVI---LYNVTMKVFRKSKDLEKSEKLFDEMLERGIK-PDNATFTTIISCAR- 221
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
++G +++F M G D A++I ++ V +A L+ A + D
Sbjct: 222 -QNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDA 280
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
F L+ +Y G + L + E MK + + I +++ + + W A +Y+
Sbjct: 281 VTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKD 340
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
LI+ G P TYA+++ AY R A ++ EM++KG V+ Y+++++M
Sbjct: 341 LITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRY 400
Query: 251 IRDAMRLVAKMKP-KGCEPNVWIYNSLMDMHGRAKNLRQLEK----------------YT 293
+ +A + MK + C+P+ W ++SL+ ++ + + + E T
Sbjct: 401 VDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLT 460
Query: 294 TVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIE 341
+VI Y A++ D V+ +++ G D G ++ V ++ E
Sbjct: 461 SVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEE 508
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 121/273 (44%), Gaps = 4/273 (1%)
Query: 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEIL 80
D Y +M + K+G + + LF + R D+ PS Y L D L +SG
Sbjct: 373 DVVSYNTLMHGYIKMGKFVEASLLFDDL--RAGDIHPSIV-TYNTLIDGLCESGNLEGAQ 429
Query: 81 KFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140
+ +M + I D Y +L+ F + +A E++ E KG+ D + +
Sbjct: 430 RLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGE 489
Query: 141 IEEGMVEKTLEVVESMKNAELNISD-CISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPG 199
+ G +K + E M + + D I V ++G K A++ ++ G +P
Sbjct: 490 LRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPD 549
Query: 200 QVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVA 259
VTY ++I Y G + A ++ EM +K V+ Y ++ + K GR+ A +
Sbjct: 550 HVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYST 609
Query: 260 KMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKY 292
+MK +G PNV +N+L+ +A N+ + +Y
Sbjct: 610 EMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRY 642
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 61/358 (17%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
YE M GI+ + ++++ +K GD E+V ++LE + R ++ + + Y IL +
Sbjct: 226 YETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVT---YNILING 282
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDP---------------------------------- 95
K+G+ E +F DM+ G P
Sbjct: 283 FSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPT 342
Query: 96 -SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG-MVEKTLEVV 153
S Y IC+ + A EL D+ + L+ YI+ G VE +L +
Sbjct: 343 TSTYNIYICALCDFGRIDDARELLSSMAAP----DVVSYNTLMHGYIKMGKFVEASL-LF 397
Query: 154 ESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI 213
+ ++ +++ S +++G + A ++ E++ +Q P +TY +++ + +
Sbjct: 398 DDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKN 457
Query: 214 GLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCE-PNVWI 272
G S A +V+ EM +KG AY++ + G A RL +M P++ I
Sbjct: 458 GNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTI 517
Query: 273 YNSLMDMHGRAKNL-------RQLEK---------YTTVISAYNMAREFDMCVKFYNE 314
YN +D + NL R++ + YTTVI Y +F M Y+E
Sbjct: 518 YNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDE 575
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 6/171 (3%)
Query: 114 AEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVN 173
A +++ E G++ + F ++ + G +E+ ++ MK + S+ +++N
Sbjct: 222 ASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILIN 281
Query: 174 GFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK 233
GFSK A + + + G ++ +I YC+ GL+ A V EM G
Sbjct: 282 GFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYP 341
Query: 234 CVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK 284
Y+ + GRI DA L++ M P+V YN+L MHG K
Sbjct: 342 TTSTYNIYICALCDFGRIDDARELLSSM----AAPDVVSYNTL--MHGYIK 386
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 139 MYIEEGMVEKTLEVVESM--KNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGC 196
+Y ++ M EK L E M K ++ +C +++ R A VYE +I G
Sbjct: 177 VYTKKSMAEKFLLSFEKMIRKGFLPSVRNC--NIVLKVLRDSRMMNKASAVYETMIEHGI 234
Query: 197 IPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMR 256
+P +T+ +++++ + G + +K+++EM+++ + V Y+ ++ + K G++ +A R
Sbjct: 235 MPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARR 294
Query: 257 LVAKMKPKGCEPNVWIYNSLMD 278
M+ G + +N L++
Sbjct: 295 FHGDMRRSGFAVTPYSFNPLIE 316
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/281 (18%), Positives = 110/281 (39%), Gaps = 37/281 (13%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
Y++M GI D Y ++GDS+K A L E D +Y + D
Sbjct: 467 YDEMLRKGIKPDGYAYTTRAVGELRLGDSDK--AFRLHEEMVATDHHAPDLTIYNVRIDG 524
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
L K G + ++F R + G++ D Y ++I + + K+A L+ E K +
Sbjct: 525 LCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPS 584
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+ + L+ + + G +E+ + MK
Sbjct: 585 VITYFVLIYGHAKAGRLEQAFQYSTEMK-------------------------------- 612
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
+G P +T+ +++ C+ G +A + +M+++G +Y+ +++
Sbjct: 613 ---KRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFE 669
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLE 290
+ + ++L +M K EP+ + + +L + R++E
Sbjct: 670 KWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEKDHESREVE 710
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 139/289 (48%), Gaps = 17/289 (5%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPS-----STH 61
L + KMK GI Y +M V+A+F++ R ++ S
Sbjct: 207 LWVWRKMKENGIEPTLYTYNFLMNGL--------VSAMFVDSAERVFEVMESGRIKPDIV 258
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
Y + K+G+ + ++ RDM+ +G D Y ++I + + ++ L++E
Sbjct: 259 TYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEM 318
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESM--KNAELNISDCISCVIVNGFSKRR 179
+EKG+ F ++ +EG + + V E+M K ++ N++ I V+++G++K
Sbjct: 319 DEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVA--IYTVLIDGYAKSG 376
Query: 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYS 239
+ A+++ ++I +G P VTY+ ++N C+ G +A F + G + YS
Sbjct: 377 SVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYS 436
Query: 240 SMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ 288
S++ GK GR+ +A RL +M KGC + + YN+L+D + + + +
Sbjct: 437 SLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDE 485
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 131/340 (38%), Gaps = 54/340 (15%)
Query: 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFF 83
CY +++ D +++ F+ E +K + P + L S GK G E+L +
Sbjct: 154 CYVSLVDVLALAKDVDRIR--FVSSEIKKFEF-PMTVSAANALIKSFGKLGMVEELLWVW 210
Query: 84 RDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEE 143
R MKE GI Y L+ S V AE +F+ E + D+ + ++ Y +
Sbjct: 211 RKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKA 270
Query: 144 GMVEKTLEVVESMKN------------------AELNISDCIS----------------- 168
G +K +E + M+ A+ + C++
Sbjct: 271 GQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAF 330
Query: 169 CVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228
+++ G K V+E +I +G P Y +I+ Y + G A ++ M
Sbjct: 331 SLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMID 390
Query: 229 KGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ 288
+GF VV YS +V K GR+ +A+ + G N Y+SL+D G+A + +
Sbjct: 391 EGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDE 450
Query: 289 LEK----------------YTTVISAYNMAREFDMCVKFY 312
E+ Y +I A+ R+ D + +
Sbjct: 451 AERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALF 490
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 115/263 (43%), Gaps = 13/263 (4%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLEC--ESRKLDLTPSSTHMYKILC 67
+E M G + Y +++ + K G E L E K D+ Y ++
Sbjct: 350 FENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVV-----TYSVVV 404
Query: 68 DSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGML 127
+ L K+GR E L +F + G+ + Y+SLI V AE LF+E EKG
Sbjct: 405 NGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCT 464
Query: 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE-LNISDCISCVIVNGFSKRRAYWAAVK 186
RD + L+ + + V++ + + + M+ E + + ++++G K A+K
Sbjct: 465 RDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALK 524
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG--FDKCVVAYSSMVAM 244
+++ +I +G P + ++ C G ++A K+ E+ G D A M+
Sbjct: 525 LWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILD---AACEDMINT 581
Query: 245 YGKTGRIRDAMRLVAKMKPKGCE 267
K GRI++A +L + +G E
Sbjct: 582 LCKAGRIKEACKLADGITERGRE 604
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/299 (18%), Positives = 117/299 (39%), Gaps = 39/299 (13%)
Query: 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHM 62
+Q + M++ G D Y +++A Y D AL+ E + + + + P H
Sbjct: 273 TQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPP---HA 329
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
+ ++ L K G+ E F +M KG + ++Y LI +A V+ A L
Sbjct: 330 FSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 389
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG-------- 174
++G D+ + +V + G VE+ L+ + + L I+ +++G
Sbjct: 390 DEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVD 449
Query: 175 ---------------------------FSKRRAYWAAVKVYEQLISQ-GCIPGQVTYASI 206
F+K R A+ +++++ + GC TY +
Sbjct: 450 EAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTIL 509
Query: 207 INAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG 265
++ + +A K++ M KG + ++ +G++ A +++ ++ P G
Sbjct: 510 LSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMG 568
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 3/168 (1%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+E+M G DS CY +++AF K ++ ALF E + + + Y IL
Sbjct: 455 FEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEE--EGCDQTVYTYTILLSG 512
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
+ K R E LK + M +KGI + + +L +V A ++ E G++ D
Sbjct: 513 MFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILD 572
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177
++ + G +++ ++ + + + I V++N K
Sbjct: 573 AAC-EDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRK 619
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 134/277 (48%), Gaps = 5/277 (1%)
Query: 49 ESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108
E K L P +++ L D+L K+G E K F DM+EK + + SL+ +
Sbjct: 192 EMPKYGLEPDE-YVFGCLLDALCKNGSVKEASKVFEDMREK-FPPNLRYFTSLLYGWCRE 249
Query: 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNA--ELNISDC 166
++ A+E+ + +E G+ D+ VF L+ Y G + +++ M+ E N+ +C
Sbjct: 250 GKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNV-NC 308
Query: 167 ISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEM 226
+ +I + A++V+ ++ GC VTY ++I+ +C+ G+ K V +M
Sbjct: 309 YTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDM 368
Query: 227 QQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286
++KG V Y ++ + K + + + L+ KMK +GC P++ IYN ++ + + +
Sbjct: 369 RKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEV 428
Query: 287 RQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVID 323
++ + + A ++ D V N F G +I+
Sbjct: 429 KEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIE 465
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 102/230 (44%), Gaps = 6/230 (2%)
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE-VKVAEELFKEAEEKGMLRD 129
GK A++++ DM+++G + + Y LI + + + A +F E E G D
Sbjct: 285 GKMADAYDLMN---DMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEAD 341
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+ + L+ + + GM++K V++ M+ + S I+ K+ + +++ E
Sbjct: 342 IVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIE 401
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
++ +GC P + Y +I C++G +A +++ EM+ G V + M+ + G
Sbjct: 402 KMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQG 461
Query: 250 RIRDAMRLVAKMKPKG--CEPNVWIYNSLMDMHGRAKNLRQLEKYTTVIS 297
+ +A +M +G P SL++ R L + + IS
Sbjct: 462 FLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCIS 511
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 4/220 (1%)
Query: 12 KMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLG 71
+MK AG+ D + ++ + G + A L + RK P+ + Y +L +L
Sbjct: 261 QMKEAGLEPDIVVFTNLLSGYAHAG--KMADAYDLMNDMRKRGFEPN-VNCYTVLIQALC 317
Query: 72 KS-GRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
++ R E ++ F +M+ G D Y +LI F + + + +KG++
Sbjct: 318 RTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQ 377
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
++++++ + ++ E+ LE++E MK + I V++ K AV+++ +
Sbjct: 378 VTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNE 437
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230
+ + G PG T+ +IN + G +A F EM +G
Sbjct: 438 MEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRG 477
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 152 VVESMK--NAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINA 209
++E M+ N EL I + V++ F+ AV+V +++ G P + + +++A
Sbjct: 153 LIEEMRKTNPEL-IEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDA 211
Query: 210 YCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPN 269
C+ G +A KVF +M++K F + ++S++ + + G++ +A ++ +MK G EP+
Sbjct: 212 LCKNGSVKEASKVFEDMREK-FPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPD 270
Query: 270 VWIYNSLMDMHGRA 283
+ ++ +L+ + A
Sbjct: 271 IVVFTNLLSGYAHA 284
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 119/266 (44%), Gaps = 41/266 (15%)
Query: 19 VLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHM-YKILCDSLGKSGRAF 77
+LD Y I+ A+ + G EK LF R ++ PS T + Y ++ D GK GR++
Sbjct: 207 LLDVRAYTTILHAYSRTGKYEKAIDLF----ERMKEMGPSPTLVTYNVILDVFGKMGRSW 262
Query: 78 -EILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKL 136
+IL +M+ KG+ D ++++ + A ++ A+E F E + G
Sbjct: 263 RKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCG----------- 311
Query: 137 VLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGC 196
E G V NA L + F K Y A+ V +++ C
Sbjct: 312 ----YEPGTV---------TYNALLQV-----------FGKAGVYTEALSVLKEMEENSC 347
Query: 197 IPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMR 256
VTY ++ AY R G +A V M +KG + Y++++ YGK G+ +A++
Sbjct: 348 PADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALK 407
Query: 257 LVAKMKPKGCEPNVWIYNSLMDMHGR 282
L MK GC PN YN+++ + G+
Sbjct: 408 LFYSMKEAGCVPNTCTYNAVLSLLGK 433
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 134/320 (41%), Gaps = 38/320 (11%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L ++M+S G+ D ++ A + G + F E +S + T Y L
Sbjct: 266 LGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYE---PGTVTYNAL 322
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
GK+G E L ++M+E D Y L+ ++ K A + + +KG+
Sbjct: 323 LQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGV 382
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIV-------------- 172
+ + + ++ Y + G ++ L++ SMK A + C ++
Sbjct: 383 MPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIK 442
Query: 173 -------NGFSKRRAYWAAV--------------KVYEQLISQGCIPGQVTYASIINAYC 211
NG S RA W + +V+ ++ S G P + T+ ++I+AY
Sbjct: 443 MLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYG 502
Query: 212 RIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVW 271
R G A K++ EM + GF+ CV Y++++ + G R +++ MK KG +P
Sbjct: 503 RCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTET 562
Query: 272 IYNSLMDMHGRAKNLRQLEK 291
Y+ ++ + + N +E+
Sbjct: 563 SYSLMLQCYAKGGNYLGIER 582
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/299 (20%), Positives = 127/299 (42%), Gaps = 9/299 (3%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
Y +M AG Y ++ A + GD + + +S+ T +S Y ++
Sbjct: 514 YGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETS---YSLMLQC 570
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
K G I + +KE I + +L+ + + +E F ++ G D
Sbjct: 571 YAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPD 630
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+ +F ++ ++ M ++ ++ES++ L+ +++ + +R W A ++ +
Sbjct: 631 MVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILK 690
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
L P V+Y ++I +CR GL +A ++ EM ++G C+ Y++ V+ Y G
Sbjct: 691 TLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMG 750
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMC 308
+ ++ M C PN + ++D + RA KY+ + + + FD C
Sbjct: 751 MFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG------KYSEAMDFVSKIKTFDPC 803
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 118/252 (46%), Gaps = 17/252 (6%)
Query: 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCIS 168
++ VA +L + + L D+ + ++ Y G EK +++ E MK + +
Sbjct: 189 SQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTY 248
Query: 169 CVIVNGFSKRRAYWAAV-KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQ 227
VI++ F K W + V +++ S+G + T +++++A R GL +A++ F E++
Sbjct: 249 NVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELK 308
Query: 228 QKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLR 287
G++ V Y++++ ++GK G +A+ ++ +M+ C + YN L+ + RA +
Sbjct: 309 SCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSK 368
Query: 288 QLE----------------KYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMV 331
+ YTTVI AY A + D +K + + G V + ++
Sbjct: 369 EAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVL 428
Query: 332 GVFSKLSQIEEL 343
+ K S+ E+
Sbjct: 429 SLLGKKSRSNEM 440
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/340 (20%), Positives = 137/340 (40%), Gaps = 54/340 (15%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E M G++ ++ Y +++A+ K G ++ LF ++ P+ T Y + L
Sbjct: 375 EMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSM--KEAGCVPN-TCTYNAVLSLL 431
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
GK R+ E++K DMK G + + + +++ + K +F+E + G D
Sbjct: 432 GKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDR 491
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
+ F L+ Y G ++ M A N ++N +++ + + V
Sbjct: 492 DTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISD 551
Query: 191 LISQGCIPGQVTYASIINAYCRIGLY---------------------------------- 216
+ S+G P + +Y+ ++ Y + G Y
Sbjct: 552 MKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRA 611
Query: 217 -SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNS 275
+ +E+ F ++ G+ +V ++SM++++ + A ++ ++ G P++ YNS
Sbjct: 612 LAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNS 671
Query: 276 LMDMHGRAKN-------LRQLEK---------YTTVISAY 299
LMDM+ R L+ LEK Y TVI +
Sbjct: 672 LMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGF 711
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 36/168 (21%)
Query: 152 VVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYC 211
+V S + L + + + V + Y A K+ +++ Q + Y +I++AY
Sbjct: 162 LVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYS 221
Query: 212 RIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR--------------------- 250
R G Y KA +F M++ G +V Y+ ++ ++GK GR
Sbjct: 222 RTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDE 281
Query: 251 ---------------IRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRA 283
+R+A A++K G EP YN+L+ + G+A
Sbjct: 282 FTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKA 329
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 118/254 (46%), Gaps = 3/254 (1%)
Query: 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFR 84
Y ++ K GD++ L + E+ K++ + ++ + DSL K + L F+
Sbjct: 228 YGVVVNGLCKRGDTDLALNLLNKMEAAKIE---ADVVIFNTIIDSLCKYRHVDDALNLFK 284
Query: 85 DMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144
+M+ KGI + Y+SLI S A +L + EK + +L F L+ +++EG
Sbjct: 285 EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 344
Query: 145 MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYA 204
+ ++ + M ++ +VNGF A +++E ++S+ C P VTY
Sbjct: 345 KFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYN 404
Query: 205 SIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264
++I +C+ ++F EM +G V Y++++ G +A ++ +M
Sbjct: 405 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 464
Query: 265 GCEPNVWIYNSLMD 278
G P++ Y+ L+D
Sbjct: 465 GVPPDIMTYSILLD 478
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 5/272 (1%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L+ +++M++ GI + Y ++ G + L + +K++ + + L
Sbjct: 280 LNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN---PNLVTFNAL 336
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
D+ K G+ E K + DM ++ I D Y SL+ F + A+++F+ K
Sbjct: 337 IDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 396
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCIS-CVIVNGFSKRRAYWAAV 185
D+ + L+ + + VE E+ M + L + D ++ ++ G A
Sbjct: 397 FPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL-VGDTVTYTTLIQGLFHDGDCDNAQ 455
Query: 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245
KV++Q++S G P +TY+ +++ C G KA +VF MQ+ + Y++M+
Sbjct: 456 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGM 515
Query: 246 GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
K G++ D L + KG +PNV YN+++
Sbjct: 516 CKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 547
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 148/341 (43%), Gaps = 20/341 (5%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
EKM+ IV Y ++ F + S+ AL L + KL PS + +L +
Sbjct: 109 EKMQRLEIVHGLYTYNILINCFCR--RSQISLALALLGKMMKLGYEPSIVTLSSLL-NGY 165
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
R + + M E G D + +LI + A L ++G +L
Sbjct: 166 CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 225
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
+ +V + G + L ++ M+ A++ I I++ K R A+ ++++
Sbjct: 226 VTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 285
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
+ ++G P VTY+S+I+ C G +S A ++ +M +K + +V +++++ + K G+
Sbjct: 286 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 345
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMD---MHGRAKNLRQL-------------EKYTT 294
+A +L M + +P+++ YNSL++ MH R +Q+ Y T
Sbjct: 346 FVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNT 405
Query: 295 VISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMV-GVF 334
+I + ++ + + + E G V D ++ G+F
Sbjct: 406 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 35/220 (15%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y L KS R + + FR+M +G++ D Y +LI + A+++FK+
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
G+ D+ + L+ G +EK LEV + M+ +E+ +
Sbjct: 463 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD------------------ 504
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
+Y Y ++I C+ G +F + KG VV Y++M+
Sbjct: 505 ----IY-------------IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 547
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGR 282
+ +++A L+ KMK G PN YN+L+ H R
Sbjct: 548 SGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLR 587
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 104/244 (42%), Gaps = 7/244 (2%)
Query: 49 ESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108
+SR L PS K+L ++ K + ++ M+ I+ Y LI F
Sbjct: 78 KSRPL---PSIVEFNKLL-SAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRR 133
Query: 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCIS 168
+++ +A L + + G + L+ Y + + +V+ M
Sbjct: 134 SQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITF 193
Query: 169 CVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228
+++G AV + ++++ +GC P VTY ++N C+ G A + +M+
Sbjct: 194 TTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEA 253
Query: 229 KGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD---MHGRAKN 285
+ VV +++++ K + DA+ L +M+ KG PNV Y+SL+ +GR +
Sbjct: 254 AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD 313
Query: 286 LRQL 289
QL
Sbjct: 314 ASQL 317
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALF--LECESRKLDLTPSSTHMYKILC 67
+++M S G+ D Y +++ G EK +F ++ KLD+ ++Y +
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI-----YIYTTMI 512
Query: 68 DSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGML 127
+ + K+G+ + F + KG+ + Y ++I S ++ A L K+ +E G L
Sbjct: 513 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 572
Query: 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESMKN 158
+ + L+ ++ +G + E++ M++
Sbjct: 573 PNSGTYNTLIRAHLRDGDKAASAELIREMRS 603
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 135/281 (48%), Gaps = 19/281 (6%)
Query: 25 YCQIMEAFYKIGDSEKVAALFLE-CESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFF 83
Y I++ F K+GD++ + E E+ K +P+ + L + KS R L+
Sbjct: 593 YNSIIDGFVKVGDTDSAVETYREMSENGK---SPNVV-TFTSLINGFCKSNRMDLALEMT 648
Query: 84 RDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEE 143
+MK + D Y +LI F ++K A LF E E G++ ++ V+ L+ +
Sbjct: 649 HEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNL 708
Query: 144 GMVEKTLEVVESMKNAELNISDCISC------VIVNGFSKRRAYWAAVKVYEQLISQGCI 197
G ++ +++ + M ++D ISC +++G K A +Y +L+ G +
Sbjct: 709 GKMDAAIDLYKKM------VNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIV 762
Query: 198 PGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRL 257
P ++ + ++N + G + KA K+ EM++K V+ YS+++A + + G + +A RL
Sbjct: 763 PDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRL 822
Query: 258 VAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISA 298
+M KG + ++N L+ GR + K +++ S
Sbjct: 823 HDEMLEKGIVHDDTVFNLLVS--GRVEKPPAASKISSLASP 861
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/341 (19%), Positives = 152/341 (44%), Gaps = 24/341 (7%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+ +M G+ ++ Y +++ F+K D + + + + + ++ +Y + +
Sbjct: 507 FSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFE---ANEVIYNTIING 563
Query: 70 L---GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
L G++ +A E+L+ +KEK + Y S+I F + + A E ++E E G
Sbjct: 564 LCKVGQTSKAKEMLQNL--IKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGK 621
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186
++ F L+ + + ++ LE+ MK+ EL + +++GF K+ A
Sbjct: 622 SPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYT 681
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246
++ +L G +P Y S+I+ + +G A ++ +M G + Y++M+
Sbjct: 682 LFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLL 741
Query: 247 KTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGR-------AKNLRQLEK-------- 291
K G I A L +++ G P+ ++ L++ + +K L +++K
Sbjct: 742 KDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVL 801
Query: 292 -YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMV 331
Y+TVI+ ++ + + ++E G V D + ++V
Sbjct: 802 LYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLV 842
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/388 (19%), Positives = 150/388 (38%), Gaps = 56/388 (14%)
Query: 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY 63
+ + +Y +MKS I S +++ K E +F + + ++
Sbjct: 397 EKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNKIF 456
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
+ C K G+ F + M++KGI + Y +++ + + + +A +F E E
Sbjct: 457 LLFC----KQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLE 512
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCI---------------- 167
KG+ + + L+ + + + +V+ M + ++ I
Sbjct: 513 KGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSK 572
Query: 168 ----------------SCV----IVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASII 207
SC I++GF K +AV+ Y ++ G P VT+ S+I
Sbjct: 573 AKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLI 632
Query: 208 NAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCE 267
N +C+ A ++ EM+ + AY +++ + K ++ A L +++ G
Sbjct: 633 NGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLM 692
Query: 268 PNVWIYNSLM-------------DMHGRAKNLR---QLEKYTTVISAYNMAREFDMCVKF 311
PNV +YNSL+ D++ + N L YTT+I ++
Sbjct: 693 PNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDL 752
Query: 312 YNEFRMNGGVIDRAMAGIMVGVFSKLSQ 339
Y+E G V D + ++V SK Q
Sbjct: 753 YSELLDLGIVPDEILHMVLVNGLSKKGQ 780
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 108/244 (44%), Gaps = 35/244 (14%)
Query: 78 EILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEK-GMLRDLEVFLKL 136
E +K FR + +G D +++ + + ++ +A +L +E K G+ E + +
Sbjct: 257 EAVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSV 316
Query: 137 VLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGC 196
++ +++EG +E+ + V++ M + +S + +VNG+ K A+ ++ ++ +G
Sbjct: 317 IVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGL 376
Query: 197 IPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA------------- 243
P +V ++ ++ +C+ KA + ++ M+ V +M+
Sbjct: 377 APDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALE 436
Query: 244 ---------------------MYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGR 282
++ K G++ A + M+ KG EPNV YN++M H R
Sbjct: 437 IFNDSFESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCR 496
Query: 283 AKNL 286
KN+
Sbjct: 497 MKNM 500
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 121/273 (44%), Gaps = 11/273 (4%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+ ++ S G D + ++A K D V AL L E R P+S Y + +
Sbjct: 262 FRRVMSRGAEPDGLLFSLAVQAACKTPD--LVMALDLLREMRGKLGVPASQETYTSVIVA 319
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
K G E ++ +M GI SL+ + E+ A +LF EE+G+ D
Sbjct: 320 FVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPD 379
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKV-- 187
+F +V + + +EK +E MK+ + S + ++ G K + AA+++
Sbjct: 380 KVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFN 439
Query: 188 --YEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245
+E I+ G + + I +C+ G A M+QKG + VV Y++M+ +
Sbjct: 440 DSFESWIAHGFMCNK-----IFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAH 494
Query: 246 GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
+ + A + ++M KG EPN + Y+ L+D
Sbjct: 495 CRMKNMDLARSIFSEMLEKGLEPNNFTYSILID 527
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 116/259 (44%), Gaps = 38/259 (14%)
Query: 20 LDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEI 79
+ G Y ++ K+G + LF + S + S Y + +SL +G+ E
Sbjct: 370 MTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDS---YMSMLESLCGAGKTIEA 426
Query: 80 LKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139
++ + EKG++ D +Y ++ + + ++ +LF++ ++ G D+ + L+
Sbjct: 427 IEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIAS 486
Query: 140 YIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPG 199
+ G V++ A+ ++E+L C P
Sbjct: 487 FGRVGEVDE-----------------------------------AINIFEELERSDCKPD 511
Query: 200 QVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVA 259
++Y S+IN + G +A F EMQ+KG + VV YS+++ +GKT R+ A L
Sbjct: 512 IISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFE 571
Query: 260 KMKPKGCEPNVWIYNSLMD 278
+M KGC+PN+ YN L+D
Sbjct: 572 EMLVKGCQPNIVTYNILLD 590
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 5/199 (2%)
Query: 58 SSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEEL 117
+ T MY + +LGK + I F MK+ G D Y LI SF + EV A +
Sbjct: 440 TDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINI 499
Query: 118 FKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177
F+E E D+ + L+ + G V++ + M+ LN ++ F K
Sbjct: 500 FEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGK 559
Query: 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA 237
A ++E+++ +GC P VTY +++ + G ++A ++ +M+Q+G +
Sbjct: 560 TERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSIT 619
Query: 238 YSSMVAM----YGKTGRIR 252
Y+ + + +GK+ RIR
Sbjct: 620 YTVLERLQSVSHGKS-RIR 637
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 35/223 (15%)
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
+Y L +L K G E + F DM + + Y S++ S + A E+ +
Sbjct: 374 IYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKI 433
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181
EKG++ D +MY + + K +
Sbjct: 434 HEKGVVTD-------TMMY----------------------------NTVFSALGKLKQI 458
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
++E++ G P TY +I ++ R+G +A +F E+++ +++Y+S+
Sbjct: 459 SHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSL 518
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK 284
+ GK G + +A +M+ KG P+V Y++LM+ G+ +
Sbjct: 519 INCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTE 561
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/350 (20%), Positives = 142/350 (40%), Gaps = 68/350 (19%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESR----KLDLTPSSTHMYKILCD 68
+K + ++S Y +++A+ + D K ++ CE R KLD+ Y +L D
Sbjct: 194 VKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVY--CEIRRGGHKLDI-----FAYNMLLD 246
Query: 69 SLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR 128
+L K +A ++ F DMK++ D Y +I + I + A LF E +G+
Sbjct: 247 ALAKDEKACQV---FEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTL 303
Query: 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188
++ + L+ + + MV+K A++V+
Sbjct: 304 NVVGYNTLMQVLAKGKMVDK-----------------------------------AIQVF 328
Query: 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248
+++ GC P + TY+ ++N G + + V +E+ ++ + + YS +V K
Sbjct: 329 SRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGV-VEISKRYMTQGI--YSYLVRTLSKL 385
Query: 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMD-MHGRAKNLRQLE---------------KY 292
G + +A RL M + Y S+++ + G K + +E Y
Sbjct: 386 GHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMY 445
Query: 293 TTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
TV SA ++ + + + +G D I++ F ++ +++E
Sbjct: 446 NTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDE 495
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 39/201 (19%)
Query: 5 SKLH-YYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY 63
S +H +EKMK G D Y ++ +F ++G+ ++ +F E E + D P Y
Sbjct: 459 SHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELE--RSDCKPDIIS-Y 515
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
L + LGK+G E F++M+EKG+ D Y++L+ F V++A LF+E
Sbjct: 516 NSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLV 575
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183
KG ++ + NI + C+ NG +
Sbjct: 576 KGCQPNIVTY----------------------------NI--LLDCLEKNGRTAE----- 600
Query: 184 AVKVYEQLISQGCIPGQVTYA 204
AV +Y ++ QG P +TY
Sbjct: 601 AVDLYSKMKQQGLTPDSITYT 621
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 135/270 (50%), Gaps = 7/270 (2%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E MKS+ + + + ++E++ + +++ ++ ++ + L P TH Y + + L
Sbjct: 107 EDMKSSRCEMGTSTFLILIESYAQFELQDEILSV-VDWMIDEFGLKPD-THFYNRMLNLL 164
Query: 71 --GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR 128
G S + EI M GI D S + LI + +++ A + ++ G++
Sbjct: 165 VDGNSLKLVEISH--AKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVP 222
Query: 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188
D + F ++ YIEEG ++ L + E M + S+ VIV+GF K A+
Sbjct: 223 DEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFI 282
Query: 189 EQLISQ-GCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 247
+++ +Q G P Q T+ +++N C+ G A ++ M Q+G+D V Y+S+++ K
Sbjct: 283 QEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCK 342
Query: 248 TGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
G +++A+ ++ +M + C PN YN+L+
Sbjct: 343 LGEVKEAVEVLDQMITRDCSPNTVTYNTLI 372
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK 72
M G D Y ++ K+G+ ++ + + +R D +P+ T Y L +L K
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITR--DCSPN-TVTYNTLISTLCK 377
Query: 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV 132
+ E + R + KGIL D + SLI +VA ELF+E KG D
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFT 437
Query: 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192
+ L+ +G +++ L +++ M EL+
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQM---ELS------------------------------ 464
Query: 193 SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR 252
GC +TY ++I+ +C+ +AE++F EM+ G + V Y++++ K+ R+
Sbjct: 465 --GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVE 522
Query: 253 DAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ----------------LEKYTTVI 296
DA +L+ +M +G +P+ + YNSL+ R ++++ + Y T+I
Sbjct: 523 DAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582
Query: 297 SAYNMAREFDMCVKFYNEFRMNG-GVIDRAMAGIMVGVFSKLSQIEEL 343
S A ++ K +M G + A ++ G+F K E +
Sbjct: 583 SGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAI 630
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 136/294 (46%), Gaps = 4/294 (1%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
E M S G+V D + +M+ + + GD + AL + + + + S+ + ++
Sbjct: 213 EDMPSYGLVPDEKTFTTVMQGYIEEGDLD--GALRIREQMVEFGCSWSNVSV-NVIVHGF 269
Query: 71 GKSGRAFEILKFFRDM-KEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
K GR + L F ++M + G D + +L+ VK A E+ ++G D
Sbjct: 270 CKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
+ + ++ + G V++ +EV++ M + + + +++ K A ++
Sbjct: 330 VYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELAR 389
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
L S+G +P T+ S+I C + A ++F EM+ KG + Y+ ++ G
Sbjct: 390 VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKG 449
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAR 303
++ +A+ ++ +M+ GC +V YN+L+D +A R+ E+ + + ++R
Sbjct: 450 KLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSR 503
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 3/256 (1%)
Query: 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK 72
+ S GI+ D + +++ + LF E S+ + Y +L DSL
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCE---PDEFTYNMLIDSLCS 447
Query: 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV 132
G+ E L + M+ G Y +LI F + + AEE+F E E G+ R+
Sbjct: 448 KGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 507
Query: 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192
+ L+ + VE ++++ M ++ F + A + + +
Sbjct: 508 YNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMT 567
Query: 193 SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR 252
S GC P VTY ++I+ C+ G A K+ +Q KG + AY+ ++ + +
Sbjct: 568 SNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTT 627
Query: 253 DAMRLVAKMKPKGCEP 268
+A+ L +M + P
Sbjct: 628 EAINLFREMLEQNEAP 643
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 4/272 (1%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L+ KM+ I D Y I++ K + LF + E++ + Y L
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGI---KPDVFTYNPL 291
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKE-AEEKG 125
L GR + + DM EK I D + +LI +F ++ AE+L+ E + K
Sbjct: 292 ISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKH 351
Query: 126 MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAV 185
D+ + L+ + + VE+ +EV M L + +++GF + R A
Sbjct: 352 CFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 411
Query: 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245
V++Q++S G P +TY +++ C G A VF MQ++ +V Y++M+
Sbjct: 412 MVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEAL 471
Query: 246 GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
K G++ D L + KG +PNV Y ++M
Sbjct: 472 CKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 503
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 1/217 (0%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y + + L K G L M++ I D +Y ++I + A +LF + E
Sbjct: 218 YGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME 277
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
KG+ D+ + L+ G ++ M +N +++ F K
Sbjct: 278 TKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLV 337
Query: 183 AAVKVYEQLI-SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
A K+Y++++ S+ C P V Y ++I +C+ + +VF EM Q+G V Y+++
Sbjct: 338 EAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTL 397
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278
+ + + +A + +M G P++ YN L+D
Sbjct: 398 IHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLD 434
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 93/203 (45%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y L K R E ++ FR+M ++G++ + Y +LI F + A+ +FK+
Sbjct: 359 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 418
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
G+ D+ + L+ G VE L V E M+ ++ + ++ K
Sbjct: 419 SDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVE 478
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
++ L +G P VTY ++++ +CR GL +A+ +F+EM++ G Y++++
Sbjct: 479 DGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLI 538
Query: 243 AMYGKTGRIRDAMRLVAKMKPKG 265
+ G + L+ +M+ G
Sbjct: 539 RARLRDGDEAASAELIKEMRSCG 561
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 1/221 (0%)
Query: 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEE 116
PS K+L ++ K + ++ M+ GI + Y+ I F +++ +A
Sbjct: 73 PSIVEFSKLL-SAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALA 131
Query: 117 LFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFS 176
+ + + G + L+ + + + + +V+ M +V+G
Sbjct: 132 ILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLF 191
Query: 177 KRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVV 236
+ AV + E+++ +GC P VTY ++IN C+ G A + +M++ + VV
Sbjct: 192 QHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVV 251
Query: 237 AYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
Y++++ K + DA L KM+ KG +P+V+ YN L+
Sbjct: 252 IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI 292
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 83/186 (44%), Gaps = 2/186 (1%)
Query: 95 PSV--YASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEV 152
PS+ ++ L+ + A + + + L ++ + G+ +L + + + + L +
Sbjct: 73 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132
Query: 153 VESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 212
+ M S ++NGF AV + +Q++ G P VT+ ++++ +
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192
Query: 213 IGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWI 272
S+A + M KG +V Y +++ K G A+ L+ KM+ E +V I
Sbjct: 193 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 252
Query: 273 YNSLMD 278
YN+++D
Sbjct: 253 YNTIID 258
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 113/231 (48%), Gaps = 3/231 (1%)
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
G+ RAF++ F+ M+++GI D Y++LI + + + +LF +A KG+ D+
Sbjct: 300 GEMDRAFDL---FKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDV 356
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
VF + +Y++ G + V + M ++ + +++ G + + A +Y Q
Sbjct: 357 VVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQ 416
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
++ +G P VTY+S+I+ +C+ G ++ +M + G+ VV Y +V K G
Sbjct: 417 ILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGL 476
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNM 301
+ AMR KM + NV ++NSL+D R + K ++ Y +
Sbjct: 477 MLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGI 527
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 107/234 (45%), Gaps = 1/234 (0%)
Query: 55 LTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVA 114
+ PS + + D+L G + L F R + E+G V + + S+ +++VA
Sbjct: 212 IEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERG-FRVGIVSCNKVLKGLSVDQIEVA 270
Query: 115 EELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG 174
L + G ++ F L+ + + G +++ ++ + M+ + +++G
Sbjct: 271 SRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDG 330
Query: 175 FSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC 234
+ K K++ Q + +G V ++S I+ Y + G + A V+ M +G
Sbjct: 331 YFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPN 390
Query: 235 VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ 288
VV Y+ ++ + GRI +A + ++ +G EP++ Y+SL+D + NLR
Sbjct: 391 VVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRS 444
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 118/273 (43%), Gaps = 3/273 (1%)
Query: 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY 63
+ L + +M G+ D+ YC +++AF K LF + K+ + +
Sbjct: 548 EEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKIS---ADIAVC 604
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
++ L K R + KFF ++ E + D Y ++IC + S+ + AE +F+ +
Sbjct: 605 NVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKV 664
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183
+ L+ + + ++ + + M + +++ FSK
Sbjct: 665 TPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEG 724
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243
+ K++E++ +G P V+Y+ II+ C+ G +A +F + VVAY+ ++
Sbjct: 725 SFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIR 784
Query: 244 MYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSL 276
Y K GR+ +A L M G +P+ + +L
Sbjct: 785 GYCKVGRLVEAALLYEHMLRNGVKPDDLLQRAL 817
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 122/318 (38%), Gaps = 44/318 (13%)
Query: 10 YEKMKSAGIVLDSG------CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY 63
YE G +L G Y +++ F K G+ AL+ + P +Y
Sbjct: 408 YEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGY---PPDVVIY 464
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
+L D L K G ++F M + I + V+ SLI + + A ++F+
Sbjct: 465 GVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGI 524
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK------ 177
G+ D+ F ++ + I EG +E+ L + M L C +++ F K
Sbjct: 525 YGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTI 584
Query: 178 ---------RRAYWA--------------------AVKVYEQLISQGCIPGQVTYASIIN 208
R A A K + LI P VTY ++I
Sbjct: 585 GLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMIC 644
Query: 209 AYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEP 268
YC + +AE++F ++ F V + ++ + K + A+R+ + M KG +P
Sbjct: 645 GYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKP 704
Query: 269 NVWIYNSLMDMHGRAKNL 286
N Y LMD ++ ++
Sbjct: 705 NAVTYGCLMDWFSKSVDI 722
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 112/264 (42%), Gaps = 42/264 (15%)
Query: 17 GIVLDSGCYCQIMEAFYKIGDSEKVAALF--LECESRKLDLTPSSTHMYKILCDSLGKSG 74
G+ LD + ++ + K GD + ++ + C+ ++P+ Y IL L + G
Sbjct: 351 GVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQG----ISPNVV-TYTILIKGLCQDG 405
Query: 75 RAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFL 134
R +E + + ++G+ Y+SLI F ++ L+++ + G D+ ++
Sbjct: 406 RIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIY- 464
Query: 135 KLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194
V+V+G SK+ A++ +++ Q
Sbjct: 465 ----------------------------------GVLVDGLSKQGLMLHAMRFSVKMLGQ 490
Query: 195 GCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDA 254
V + S+I+ +CR+ + +A KVF M G V +++++ + GR+ +A
Sbjct: 491 SIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEA 550
Query: 255 MRLVAKMKPKGCEPNVWIYNSLMD 278
+ L +M G EP+ Y +L+D
Sbjct: 551 LFLFFRMFKMGLEPDALAYCTLID 574
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 112/271 (41%), Gaps = 3/271 (1%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L + M GI D + +M G E+ ALFL K+ L P + Y L
Sbjct: 516 LKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEE--ALFLFFRMFKMGLEPDAL-AYCTL 572
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
D+ K + L+ F M+ I D +V +I ++ A + F E M
Sbjct: 573 IDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKM 632
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186
D+ + ++ Y +++ + E +K + ++++ K A++
Sbjct: 633 EPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIR 692
Query: 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246
++ + +G P VTY +++ + + + K+F EMQ+KG +V+YS ++
Sbjct: 693 MFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLC 752
Query: 247 KTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
K GR+ +A + + P+V Y L+
Sbjct: 753 KRGRVDEATNIFHQAIDAKLLPDVVAYAILI 783
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 88/205 (42%)
Query: 74 GRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVF 133
GR E L F M + G+ D Y +LI +F + + +LF + + D+ V
Sbjct: 545 GRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVC 604
Query: 134 LKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLIS 193
++ + + +E + ++ ++ ++ G+ R A +++E L
Sbjct: 605 NVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKV 664
Query: 194 QGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRD 253
P VT +I+ C+ A ++F M +KG V Y ++ + K+ I
Sbjct: 665 TPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEG 724
Query: 254 AMRLVAKMKPKGCEPNVWIYNSLMD 278
+ +L +M+ KG P++ Y+ ++D
Sbjct: 725 SFKLFEEMQEKGISPSIVSYSIIID 749
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 151/330 (45%), Gaps = 21/330 (6%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+EKM G+ + ++++F G E+ + E E + + S+T +Y L D+
Sbjct: 332 FEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIR---SNTIVYNTLMDA 388
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
KS E+ F +M++KG+ + Y L+ ++A + + E L +E E+ G+ +
Sbjct: 389 YNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPN 448
Query: 130 LEVFLKLVLMY-IEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188
++ + L+ Y + M + + MK L S +++ +S + A +
Sbjct: 449 VKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASF 508
Query: 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248
E++ +G P TY S+++A+ R G K +++ M ++ + Y++++ + K
Sbjct: 509 EEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQ 568
Query: 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRA---KNLRQLEK-------------Y 292
G +A +V++ G +P+V YN LM+ + R L QL K Y
Sbjct: 569 GLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITY 628
Query: 293 TTVISAYNMAREFDMCVKFYNEFRMNGGVI 322
+T+I A+ R+F FY++ + G +
Sbjct: 629 STMIYAFVRVRDFKRAF-FYHKMMVKSGQV 657
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 142/317 (44%), Gaps = 37/317 (11%)
Query: 18 IVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAF 77
I +SG +I+E + +++ + + E R D T + L +G+SG
Sbjct: 166 IPFESGVAREILELAKNLKENQTLGEMLSGFERRVSD-----TECVEALV-MMGESGFVK 219
Query: 78 EILKFFRDMKEKGILEDPSVYASLICS--FASIAEVKVAEE---LFKEAEEKGMLRDLEV 132
L F+ M L++PS+ + CS F + ++A+ L +K RD+ +
Sbjct: 220 SCLYFYEWMS----LQEPSLASPRACSVLFTLLGRERMADYILLLLSNLPDKEEFRDVRL 275
Query: 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNI-SDCISCVIVNGFSKR--RAYWAAVKVYE 189
+ + + EV E+M ++N+ D ++C I+ ++ R+ +++E
Sbjct: 276 YNAAISGLSASQRYDDAWEVYEAMD--KINVYPDNVTCAILITTLRKAGRSAKEVWEIFE 333
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
++ +G Q + ++ ++C GL +A + EM++KG + Y++++ Y K+
Sbjct: 334 KMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSN 393
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN-------LRQLE---------KYT 293
I + L +M+ KG +P+ YN LMD + R LR++E YT
Sbjct: 394 HIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYT 453
Query: 294 TVISAYNMAREF-DMCV 309
+ISAY ++ DM
Sbjct: 454 CLISAYGRTKKMSDMAA 470
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 120/274 (43%), Gaps = 6/274 (2%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTP-SSTHMYKI 65
L++YE M L S C ++ F +G E++A L S D +Y
Sbjct: 222 LYFYEWMSLQEPSLASPRACSVL--FTLLG-RERMADYILLLLSNLPDKEEFRDVRLYNA 278
Query: 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE-VKVAEELFKEAEEK 124
L S R + + + M + + D A LI + K E+F++ EK
Sbjct: 279 AISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEK 338
Query: 125 GMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184
G+ +VF LV + +EG+ E+ L + M+ + + + +++ ++K
Sbjct: 339 GVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEV 398
Query: 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 244
++ ++ +G P TY +++AY R E + EM+ G + V +Y+ +++
Sbjct: 399 EGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISA 458
Query: 245 YGKTGRIRD-AMRLVAKMKPKGCEPNVWIYNSLM 277
YG+T ++ D A +MK G +P+ Y +L+
Sbjct: 459 YGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALI 492
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 125/288 (43%), Gaps = 20/288 (6%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
+ +M+ G+ + Y +M+A+ + + V L E E L L P+ Y L +
Sbjct: 402 FTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMED--LGLEPN-VKSYTCLISA 458
Query: 70 LGKSGRAFEIL-KFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR 128
G++ + ++ F MK+ G+ Y +LI +++ + A F+E ++G+
Sbjct: 459 YGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKP 518
Query: 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188
+E + ++ + G K +E+ + M ++ + +++GF+K+ Y A V
Sbjct: 519 SVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVV 578
Query: 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248
+ G P +TY ++NAY R G +K ++ EM + YS+M+ +
Sbjct: 579 SEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAF--- 635
Query: 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVI 296
R+RD R + Y+ +M G+ + R EK ++
Sbjct: 636 VRVRDFKR-------------AFFYHKMMVKSGQVPDPRSYEKLRAIL 670
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 104/256 (40%), Gaps = 18/256 (7%)
Query: 65 ILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEK 124
+L LG+ A IL ++ +K D +Y + I ++ A E+++ ++
Sbjct: 243 VLFTLLGRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDKI 302
Query: 125 GMLRDLEVFLKLVLMYIEEGMVEKTL-EVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183
+ D L+ + G K + E+ E M + S + +V F
Sbjct: 303 NVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEE 362
Query: 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243
A+ + ++ +G + Y ++++AY + + E +F EM+ KG Y+ ++
Sbjct: 363 ALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMD 422
Query: 244 MYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQL-------------- 289
Y + + L+ +M+ G EPNV Y L+ +GR K + +
Sbjct: 423 AYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLK 482
Query: 290 ---EKYTTVISAYNMA 302
YT +I AY+++
Sbjct: 483 PSSHSYTALIHAYSVS 498
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 20/171 (11%)
Query: 172 VNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSK-AEKVFIEMQQKG 230
++G S + Y A +VYE + P VT A +I + G +K ++F +M +KG
Sbjct: 280 ISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKG 339
Query: 231 FDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLE 290
+ +V + G +A+ + +M+ KG N +YN+LMD
Sbjct: 340 VKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMD------------ 387
Query: 291 KYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIE 341
AYN + + + E R G A I++ +++ Q +
Sbjct: 388 -------AYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPD 431
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 131/287 (45%), Gaps = 10/287 (3%)
Query: 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK-SGRAFEILKFF 83
Y +++A+ G E+ + +E ++ + +Y + L K G E + F
Sbjct: 193 YALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVF 252
Query: 84 RDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEE 143
+ MK Y +I + ++ ++ +L+ E ++ + LV + E
Sbjct: 253 QRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFARE 312
Query: 144 GMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTY 203
G+ EK E+ E ++ L + ++ +S+ + A +++ + GC P + +Y
Sbjct: 313 GLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASY 372
Query: 204 ASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263
+++AY R GL+S AE VF EM++ G + ++ +++ Y K + +V +M
Sbjct: 373 NIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSE 432
Query: 264 KGCEPNVWIYNSLMDMHGRAKNLRQLEKY---------TTVISAYNM 301
G EP+ ++ NS+++++GR ++EK T IS YN+
Sbjct: 433 NGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNI 479
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 130/298 (43%), Gaps = 55/298 (18%)
Query: 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160
LI ++ + K AE L+ + E + + + L+ Y G++E+ V+ M+N
Sbjct: 161 LIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHH 220
Query: 161 L----------------------NISDCISC-----------------VIVNGFSKRRAY 181
+ N + I +++N + K
Sbjct: 221 VSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKS 280
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
+ + K+Y ++ S C P TY +++NA+ R GL KAE++F ++Q+ G + V Y+++
Sbjct: 281 YMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNAL 340
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRA----------KNLRQL-- 289
+ Y + G A + + M+ GCEP+ YN ++D +GRA + +++L
Sbjct: 341 MESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGI 400
Query: 290 ----EKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343
+ + ++SAY+ AR+ C E NG D + M+ ++ +L Q ++
Sbjct: 401 APTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKM 458
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/342 (20%), Positives = 142/342 (41%), Gaps = 22/342 (6%)
Query: 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTH 61
N++ + +++MK + Y ++ + K S L+ CE R P+
Sbjct: 244 NTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLY--CEMRSHQCKPNIC- 300
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
Y L ++ + G + + F ++E G+ D VY +L+ S++ A E+F
Sbjct: 301 TYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM 360
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181
+ G D + +V Y G+ V E MK + + ++++ +SK R
Sbjct: 361 QHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDV 420
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
+ +++ G P S++N Y R+G ++K EK+ EM+ + Y+ +
Sbjct: 421 TKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNIL 480
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNM 301
+ +YGK G + L ++K K P+V +T+ I AY+
Sbjct: 481 INIYGKAGFLERIEELFVELKEKNFRPDVVT-------------------WTSRIGAYSR 521
Query: 302 AREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343
+ + C++ + E +G D A +++ S Q+E++
Sbjct: 522 KKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQV 563
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 170 VIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229
++++ + ++ Y A +Y QL+ +P + TYA +I AYC GL +AE V +EMQ
Sbjct: 160 LLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNH 219
Query: 230 GFDK---CVVAYSSMV-AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRA 283
V Y++ + + + G +A+ + +MK C+P YN +++++G+A
Sbjct: 220 HVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKA 277
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 9/249 (3%)
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
+Y + DSL + G+ L + MK+ GI D Y SLI V+ + +
Sbjct: 186 IYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDM 245
Query: 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181
G+ D+ F L+ +Y +EG + + + M +N + ++NG
Sbjct: 246 MRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLL 305
Query: 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241
A KV L+S+G P VTY ++IN YC+ K+ M + G D Y+++
Sbjct: 306 DEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTL 365
Query: 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDM---HGRAK----NLRQLEKYTT 294
Y + G+ A +++ +M G P+++ +N L+D HG+ L L+K T
Sbjct: 366 YQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKT 425
Query: 295 VIS--AYNM 301
V+ YN+
Sbjct: 426 VVGIITYNI 434
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 3/251 (1%)
Query: 43 ALFLECESR--KLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100
+L L C + KL PS + L + R +E + + G + +Y +
Sbjct: 131 SLALSCLGKMMKLGFEPSIV-TFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNT 189
Query: 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160
+I S +V A ++ K ++ G+ D+ + L+ G + ++ M
Sbjct: 190 IIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMG 249
Query: 161 LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAE 220
++ +++ + K A K Y ++I + P VTY S+IN C GL +A+
Sbjct: 250 ISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAK 309
Query: 221 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMH 280
KV + KGF V Y++++ Y K R+ D M+++ M G + + + YN+L +
Sbjct: 310 KVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGY 369
Query: 281 GRAKNLRQLEK 291
+A EK
Sbjct: 370 CQAGKFSAAEK 380
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 120/280 (42%), Gaps = 17/280 (6%)
Query: 43 ALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLI 102
AL L C+ + PS ++L ++ K + ++ FR ++ GI D + +LI
Sbjct: 63 ALTLFCDMAESHPLPSIVDFSRLLI-AIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLI 121
Query: 103 CSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN 162
F A + +A + + G + F LV + + + +V+ +
Sbjct: 122 DCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYE 181
Query: 163 ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKV 222
+ I I++ ++ A+ V + + G P VTY S+I G + + ++
Sbjct: 182 PNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARI 241
Query: 223 FIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD---M 279
+M + G V+ +S+++ +YGK G++ +A + +M + PN+ YNSL++ +
Sbjct: 242 LSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCI 301
Query: 280 HGRAKNLRQLEK-------------YTTVISAYNMAREFD 306
HG +++ Y T+I+ Y A+ D
Sbjct: 302 HGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVD 341
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 111/301 (36%), Gaps = 39/301 (12%)
Query: 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY 63
+ L + MK GI D Y ++ + G + V+A L + ++ ++P +
Sbjct: 201 NTALDVLKHMKKMGIRPDVVTYNSLITRLFHSG-TWGVSARILS-DMMRMGISPDVI-TF 257
Query: 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123
L D GK G+ E K + +M ++ + + Y SLI + A+++
Sbjct: 258 SALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVS 317
Query: 124 KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183
KG + + L+ Y + V+ ++++ M ++ + G+ + + A
Sbjct: 318 KGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSA 377
Query: 184 AVKVYEQLISQGCIP-----------------------------------GQVTYASIIN 208
A KV +++S G P G +TY II
Sbjct: 378 AEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIK 437
Query: 209 AYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM-KPKGCE 267
C+ A +F + KG V+ Y +M+ + R+A L KM K G
Sbjct: 438 GLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKEDGLM 497
Query: 268 P 268
P
Sbjct: 498 P 498
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 60/298 (20%)
Query: 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKG 125
+C G+ R F+ L+ F MK+ Y +++ ++ +A + +K E G
Sbjct: 92 ICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIG 151
Query: 126 M---LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
+ + L V +K + +G V+
Sbjct: 152 LPPTVASLNVLIKALCR--NDGTVD----------------------------------- 174
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
A +K++ ++ +GC P TY ++I+ CR G +A+K+F EM +K VV Y+S++
Sbjct: 175 AGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLI 234
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLE------------ 290
+ + +AMR + +MK KG EPNV+ Y+SLMD G K+ R L+
Sbjct: 235 NGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMD--GLCKDGRSLQAMELFEMMMARG 292
Query: 291 ------KYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
YTT+I+ ++ V+ + + G D + G ++ F +S+ E
Sbjct: 293 CRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFRE 350
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 10/238 (4%)
Query: 51 RKLDLTPSSTHM---YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFAS 107
R++ L P+ + K LC + G LK F +M ++G D Y +LI
Sbjct: 148 REIGLPPTVASLNVLIKALCRNDGTVDAG---LKIFLEMPKRGCDPDSYTYGTLISGLCR 204
Query: 108 IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCI 167
+ A++LF E EK + + L+ V++ + +E MK+ + +
Sbjct: 205 FGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFT 264
Query: 168 SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQ 227
+++G K A++++E ++++GC P VTY ++I C+ +A ++ M
Sbjct: 265 YSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMN 324
Query: 228 QKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN 285
+G Y +++ + + R+A + +M G PN +N +H + N
Sbjct: 325 LQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWN----IHVKTSN 378
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 9/212 (4%)
Query: 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTH 61
N + Y E+MKS GI + Y +M+ K G S + LF +R P+
Sbjct: 242 NVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMAR--GCRPNMV- 298
Query: 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121
Y L L K + E ++ M +G+ D +Y +I F +I++ + A E
Sbjct: 299 TYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEM 358
Query: 122 EEKGMLRD---LEVFLKL---VLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGF 175
G+ + + +K V+ + + + SM++ +++ +V
Sbjct: 359 ILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCL 418
Query: 176 SKRRAYWAAVKVYEQLISQGCIPGQVTYASII 207
K+ + AV++ +++++ GCIP + T+ +I
Sbjct: 419 CKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLI 450
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 23/170 (13%)
Query: 193 SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAM---YGKTG 249
+ G + Q ++ ++ + AE + + M+ + CVV+ ++++ YG+
Sbjct: 44 ANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRMK---IENCVVSEDILLSICRGYGRVH 100
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIY----------NSLMDMHGRAKNLRQLEKYTTVISAY 299
R D++R+ KMK C+P+ Y N L KN+R++ TV S
Sbjct: 101 RPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLN 160
Query: 300 NMAREF-------DMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342
+ + D +K + E G D G ++ + +I+E
Sbjct: 161 VLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDE 210
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 129/266 (48%), Gaps = 3/266 (1%)
Query: 12 KMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLG 71
+M G+V + Y ++ +K G ++ ++ E + D + + Y + + L
Sbjct: 223 EMGKLGLVANERTYTVLINGLFKNGVKKQGFEMY---EKMQEDGVFPNLYTYNCVMNQLC 279
Query: 72 KSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLE 131
K GR + + F +M+E+G+ + Y +LI ++ A ++ + + G+ +L
Sbjct: 280 KDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLI 339
Query: 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQL 191
+ L+ + G + K L + +K+ L+ S ++V+GF ++ A K+ +++
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM 399
Query: 192 ISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI 251
+G P +VTY +I+ + R KA ++ + M++ G V YS ++ + G++
Sbjct: 400 EERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQM 459
Query: 252 RDAMRLVAKMKPKGCEPNVWIYNSLM 277
+A RL M K CEPN IYN+++
Sbjct: 460 NEASRLFKSMVEKNCEPNEVIYNTMI 485
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 4/223 (1%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y L D G+ + L RD+K +G+ Y L+ F + A ++ KE E
Sbjct: 341 YNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEME 400
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
E+G+ + L+ + +EK +++ SM+ L V+++GF +
Sbjct: 401 ERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMN 460
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
A ++++ ++ + C P +V Y ++I YC+ G +A K+ EM++K V +Y M+
Sbjct: 461 EASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMI 520
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN 285
+ K + ++A RLV KM G +P+ S++ + RAKN
Sbjct: 521 EVLCKERKSKEAERLVEKMIDSGIDPST----SILSLISRAKN 559
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 133/280 (47%), Gaps = 4/280 (1%)
Query: 9 YYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCD 68
++ + KS +VLD + +++ + G+ EK L +E + +P+ +Y L D
Sbjct: 151 FFNENKSK-VVLDVYSFGILIKGCCEAGEIEKSFDLLIEL--TEFGFSPNVV-IYTTLID 206
Query: 69 SLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR 128
K G + F +M + G++ + Y LI K E++++ +E G+
Sbjct: 207 GCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFP 266
Query: 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188
+L + ++ ++G + +V + M+ ++ + ++ G + A KV
Sbjct: 267 NLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVV 326
Query: 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248
+Q+ S G P +TY ++I+ +C +G KA + +++ +G +V Y+ +V+ + +
Sbjct: 327 DQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRK 386
Query: 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ 288
G A ++V +M+ +G +P+ Y L+D R+ N+ +
Sbjct: 387 GDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEK 426
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 130/282 (46%), Gaps = 3/282 (1%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS 69
YEKM+ G+ + Y +M K G ++ +F E R + + Y L
Sbjct: 256 YEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVT---YNTLIGG 312
Query: 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129
L + + E K MK GI + Y +LI F + ++ A L ++ + +G+
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372
Query: 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189
L + LV + +G ++V+ M+ + S ++++ F++ A+++
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRL 432
Query: 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249
+ G +P TY+ +I+ +C G ++A ++F M +K + V Y++M+ Y K G
Sbjct: 433 SMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEG 492
Query: 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK 291
A++L+ +M+ K PNV Y ++++ + + ++ E+
Sbjct: 493 SSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAER 534
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 116/259 (44%), Gaps = 6/259 (2%)
Query: 38 SEKVAALFLECESRKLDLTPSST-----HMYKILCDSLGKSGRAFEILKFFRDMKEKGIL 92
S K+ + F S LT S T +Y+++ +S +S + +F +M + G +
Sbjct: 67 SGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFV 126
Query: 93 EDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEV 152
+ + L+ + F E + K +L D+ F L+ E G +EK+ ++
Sbjct: 127 PGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVL-DVYSFGILIKGCCEAGEIEKSFDL 185
Query: 153 VESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 212
+ + + + I +++G K+ A ++ ++ G + + TY +IN +
Sbjct: 186 LIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFK 245
Query: 213 IGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWI 272
G+ + +++ +MQ+ G + Y+ ++ K GR +DA ++ +M+ +G N+
Sbjct: 246 NGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVT 305
Query: 273 YNSLMDMHGRAKNLRQLEK 291
YN+L+ R L + K
Sbjct: 306 YNTLIGGLCREMKLNEANK 324
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 125/272 (45%), Gaps = 5/272 (1%)
Query: 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKIL 66
L+ +++M++ GI + Y ++ G + L + +K++ + + L
Sbjct: 205 LNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN---PNLVTFNAL 261
Query: 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126
D+ K G+ E K DM ++ I D Y SLI F + A+++F+ K
Sbjct: 262 IDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDC 321
Query: 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCIS-CVIVNGFSKRRAYWAAV 185
DL+ + L+ + + VE E+ M + L + D ++ ++ G A
Sbjct: 322 FPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL-VGDTVTYTTLIQGLFHDGDCDNAQ 380
Query: 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245
KV++Q++S G P +TY+ +++ C G KA +VF MQ+ + Y++M+
Sbjct: 381 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGM 440
Query: 246 GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277
K G++ D L + KG +PNV YN+++
Sbjct: 441 CKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 472
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 116/254 (45%), Gaps = 3/254 (1%)
Query: 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFR 84
Y ++ K GD + L + E+ K++ + ++ + DSL K + L F+
Sbjct: 153 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIE---ADVVIFNTIIDSLCKYRHVDDALNLFK 209
Query: 85 DMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144
+M+ KGI + Y+SLI S A +L + EK + +L F L+ +++EG
Sbjct: 210 EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 269
Query: 145 MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYA 204
+ ++ + M ++ ++NGF A +++E ++S+ C P TY
Sbjct: 270 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYN 329
Query: 205 SIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264
++I +C+ ++F EM +G V Y++++ G +A ++ +M
Sbjct: 330 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 389
Query: 265 GCEPNVWIYNSLMD 278
G P++ Y+ L+D
Sbjct: 390 GVPPDIMTYSILLD 403
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 150/341 (43%), Gaps = 20/341 (5%)
Query: 11 EKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL 70
EKM+ GI + Y ++ F + S+ AL L + KL PS + +L +
Sbjct: 34 EKMQRLGISHNLYTYNILINCFCR--RSQISLALALLGKMMKLGYEPSIVTLSSLL-NGY 90
Query: 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130
R + + M E G D + +LI + A L ++G +L
Sbjct: 91 CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 150
Query: 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190
+ +V + G ++ ++ M+ A++ I I++ K R A+ ++++
Sbjct: 151 VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 210
Query: 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250
+ ++G P VTY+S+I+ C G +S A ++ +M +K + +V +++++ + K G+
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 270
Query: 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMD---MHGRAKNLRQ-------------LEKYTT 294
+A +L M + +P+++ YNSL++ MH R +Q L+ Y T
Sbjct: 271 FVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNT 330
Query: 295 VISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMV-GVF 334
+I + ++ + + + E G V D ++ G+F
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 371
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 35/220 (15%)
Query: 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122
Y L KS R + + FR+M +G++ D Y +LI + A+++FK+
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387
Query: 123 EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182
G+ D+ + L+ G +EK LEV + M+ +E+ +
Sbjct: 388 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD------------------ 429
Query: 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242
+Y Y ++I C+ G +F + KG VV Y++M+
Sbjct: 430 ----IY-------------IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 472
Query: 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGR 282
+ +++A L+ KMK G P+ YN+L+ H R
Sbjct: 473 SGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLR 512
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALF--LECESRKLDLTPSSTHMYKILC 67
+++M S G+ D Y +++ G EK +F ++ KLD+ ++Y +
Sbjct: 383 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI-----YIYTTMI 437
Query: 68 DSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGML 127
+ + K+G+ + F + KG+ + Y ++I S ++ A L K+ +E G L
Sbjct: 438 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 497
Query: 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESMKN 158
D + L+ ++ +G + E++ M++
Sbjct: 498 PDSGTYNTLIRAHLRDGDKAASAELIREMRS 528
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,609,427
Number of Sequences: 539616
Number of extensions: 4477832
Number of successful extensions: 17122
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 12108
Number of HSP's gapped (non-prelim): 2468
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)