Query 044084
Match_columns 343
No_of_seqs 561 out of 1481
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 11:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.7E-59 3.7E-64 427.2 42.7 320 20-342 435-772 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.4E-59 1.8E-63 422.7 43.3 331 2-335 452-800 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.9E-53 4E-58 384.2 35.5 326 3-343 103-481 (697)
4 PLN03081 pentatricopeptide (PP 100.0 6.1E-54 1.3E-58 387.4 31.9 324 2-343 138-513 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 9.5E-53 2.1E-57 388.0 34.5 331 2-343 167-608 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 4.4E-51 9.5E-56 377.0 35.5 328 2-342 136-507 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-24 3.8E-29 203.6 40.0 327 3-343 549-890 (899)
8 PRK11788 tetratricopeptide rep 100.0 1.1E-24 2.5E-29 185.4 31.2 310 2-340 50-363 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 5E-23 1.1E-27 193.8 40.0 325 2-339 446-819 (899)
10 PRK11788 tetratricopeptide rep 99.9 2.6E-21 5.6E-26 164.9 33.3 284 24-336 37-327 (389)
11 TIGR00990 3a0801s09 mitochondr 99.9 3E-19 6.5E-24 160.1 39.1 331 2-343 142-561 (615)
12 PRK15174 Vi polysaccharide exp 99.9 6.1E-19 1.3E-23 157.8 39.3 307 2-319 57-382 (656)
13 PRK15174 Vi polysaccharide exp 99.9 8E-19 1.7E-23 157.1 35.6 307 25-343 45-371 (656)
14 PRK11447 cellulose synthase su 99.9 2.3E-17 5E-22 157.3 39.3 334 2-343 284-730 (1157)
15 KOG4626 O-linked N-acetylgluco 99.8 2.2E-18 4.8E-23 143.3 25.0 184 100-290 223-408 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 3.9E-16 8.4E-21 140.1 37.7 313 2-319 175-572 (615)
17 PRK11447 cellulose synthase su 99.8 4.3E-16 9.3E-21 148.8 39.7 227 27-261 274-555 (1157)
18 KOG4626 O-linked N-acetylgluco 99.8 9E-18 1.9E-22 139.8 22.1 309 21-343 115-441 (966)
19 PRK10049 pgaA outer membrane p 99.8 1.2E-15 2.5E-20 139.7 38.3 331 2-343 30-446 (765)
20 KOG4422 Uncharacterized conser 99.8 2E-15 4.3E-20 120.7 29.7 294 19-319 204-552 (625)
21 PRK14574 hmsH outer membrane p 99.8 1.4E-14 3E-19 130.8 37.1 306 29-343 109-503 (822)
22 COG2956 Predicted N-acetylgluc 99.8 4.9E-15 1.1E-19 114.2 28.2 295 1-318 49-347 (389)
23 PRK10049 pgaA outer membrane p 99.8 4.8E-14 1E-18 129.2 38.1 314 2-326 64-462 (765)
24 PF13429 TPR_15: Tetratricopep 99.8 2.7E-17 5.9E-22 133.2 14.3 256 27-291 13-269 (280)
25 KOG4422 Uncharacterized conser 99.7 3.1E-14 6.6E-19 114.0 29.1 285 3-291 131-454 (625)
26 PF13429 TPR_15: Tetratricopep 99.7 1E-16 2.2E-21 129.9 13.3 253 1-263 22-276 (280)
27 PRK10747 putative protoheme IX 99.7 1.2E-13 2.6E-18 117.1 31.7 254 33-317 129-389 (398)
28 KOG1155 Anaphase-promoting com 99.7 9.5E-14 2.1E-18 112.2 28.8 304 3-318 243-553 (559)
29 TIGR00540 hemY_coli hemY prote 99.7 1.8E-13 3.8E-18 116.7 32.4 278 2-289 99-389 (409)
30 PRK14574 hmsH outer membrane p 99.7 6.9E-13 1.5E-17 120.0 37.4 310 2-319 117-514 (822)
31 PRK10747 putative protoheme IX 99.7 1E-13 2.2E-18 117.5 29.6 274 35-343 97-380 (398)
32 PRK09782 bacteriophage N4 rece 99.7 5.2E-13 1.1E-17 123.3 35.9 220 61-290 478-697 (987)
33 TIGR00540 hemY_coli hemY prote 99.7 1.4E-13 3E-18 117.3 29.8 282 33-343 95-389 (409)
34 KOG1126 DNA-binding cell divis 99.7 1.6E-14 3.5E-19 121.6 21.4 276 3-291 335-612 (638)
35 KOG2076 RNA polymerase III tra 99.7 2.1E-12 4.5E-17 112.6 33.9 334 1-341 153-543 (895)
36 PRK09782 bacteriophage N4 rece 99.7 1.1E-11 2.3E-16 114.7 38.1 305 4-319 359-707 (987)
37 COG2956 Predicted N-acetylgluc 99.6 1.2E-11 2.6E-16 95.9 27.3 230 34-269 47-283 (389)
38 KOG4318 Bicoid mRNA stability 99.6 3.1E-13 6.6E-18 117.3 20.5 259 8-291 11-292 (1088)
39 COG3071 HemY Uncharacterized e 99.6 3.7E-11 7.9E-16 95.8 30.0 273 36-341 98-378 (400)
40 COG3071 HemY Uncharacterized e 99.6 4.1E-11 8.9E-16 95.5 29.9 276 2-290 99-381 (400)
41 KOG2076 RNA polymerase III tra 99.6 3.6E-11 7.7E-16 105.0 31.8 306 29-343 146-502 (895)
42 KOG1155 Anaphase-promoting com 99.6 5E-11 1.1E-15 96.8 30.2 315 17-343 159-526 (559)
43 KOG1126 DNA-binding cell divis 99.6 2.7E-12 5.8E-17 108.5 23.5 271 37-341 334-608 (638)
44 PRK12370 invasion protein regu 99.6 7.2E-12 1.6E-16 110.9 27.5 260 20-292 254-529 (553)
45 TIGR02521 type_IV_pilW type IV 99.6 1.3E-11 2.8E-16 97.5 25.1 200 60-263 31-231 (234)
46 TIGR02521 type_IV_pilW type IV 99.6 1.3E-11 2.9E-16 97.4 25.2 202 21-229 30-232 (234)
47 PRK12370 invasion protein regu 99.5 1.1E-11 2.3E-16 109.8 26.8 233 77-319 278-536 (553)
48 KOG2003 TPR repeat-containing 99.5 6.8E-12 1.5E-16 101.7 22.1 157 178-338 503-708 (840)
49 KOG2002 TPR-containing nuclear 99.5 5.4E-11 1.2E-15 104.7 28.5 334 2-342 322-734 (1018)
50 PF13041 PPR_2: PPR repeat fam 99.5 1.2E-13 2.7E-18 79.6 6.1 50 233-282 1-50 (50)
51 KOG2003 TPR repeat-containing 99.5 6.6E-11 1.4E-15 96.1 23.4 251 31-291 428-681 (840)
52 KOG0495 HAT repeat protein [RN 99.5 2.3E-09 4.9E-14 91.1 33.2 305 24-339 518-866 (913)
53 KOG0495 HAT repeat protein [RN 99.5 4.2E-09 9.2E-14 89.5 34.6 232 102-341 523-770 (913)
54 KOG2002 TPR-containing nuclear 99.5 2.4E-10 5.2E-15 100.8 27.7 266 60-329 452-756 (1018)
55 PF13041 PPR_2: PPR repeat fam 99.4 3.3E-13 7.2E-18 77.8 6.1 47 164-210 2-48 (50)
56 PF12569 NARP1: NMDA receptor- 99.4 1.4E-09 3.1E-14 93.7 30.1 277 2-291 19-326 (517)
57 KOG1129 TPR repeat-containing 99.4 2.3E-11 4.9E-16 94.6 17.1 229 26-264 227-458 (478)
58 PF12569 NARP1: NMDA receptor- 99.4 1.6E-09 3.4E-14 93.4 30.0 278 26-316 8-332 (517)
59 KOG1840 Kinesin light chain [C 99.4 5.1E-10 1.1E-14 95.3 24.7 240 22-262 199-477 (508)
60 KOG1129 TPR repeat-containing 99.4 1.2E-10 2.6E-15 90.7 18.5 231 64-319 227-459 (478)
61 PRK11189 lipoprotein NlpI; Pro 99.4 2E-09 4.4E-14 87.6 26.6 223 34-265 38-266 (296)
62 KOG4318 Bicoid mRNA stability 99.4 7.5E-11 1.6E-15 102.9 18.3 256 43-340 11-287 (1088)
63 KOG1915 Cell cycle control pro 99.3 6.7E-08 1.5E-12 79.4 32.4 305 3-318 89-536 (677)
64 COG3063 PilF Tfp pilus assembl 99.3 3.4E-09 7.4E-14 78.7 22.9 173 103-279 43-216 (250)
65 PRK11189 lipoprotein NlpI; Pro 99.3 1.3E-08 2.9E-13 82.9 29.1 240 72-334 38-281 (296)
66 KOG0547 Translocase of outer m 99.3 1.4E-08 3E-13 83.5 28.1 181 133-317 363-565 (606)
67 KOG1840 Kinesin light chain [C 99.3 2.4E-09 5.2E-14 91.3 23.5 24 292-315 453-476 (508)
68 KOG1173 Anaphase-promoting com 99.3 5.7E-09 1.2E-13 87.2 24.9 267 3-280 260-532 (611)
69 COG3063 PilF Tfp pilus assembl 99.3 8.1E-09 1.8E-13 76.8 22.8 207 61-273 36-243 (250)
70 KOG1173 Anaphase-promoting com 99.3 2.3E-08 5E-13 83.7 26.2 266 61-336 245-534 (611)
71 KOG0547 Translocase of outer m 99.2 5E-09 1.1E-13 86.1 21.2 224 29-263 333-565 (606)
72 KOG1174 Anaphase-promoting com 99.2 1.6E-07 3.5E-12 75.9 27.6 287 21-322 231-521 (564)
73 cd05804 StaR_like StaR_like; a 99.2 1.3E-07 2.7E-12 79.9 28.8 203 22-229 6-215 (355)
74 cd05804 StaR_like StaR_like; a 99.2 7.7E-07 1.7E-11 75.1 33.3 229 29-264 50-293 (355)
75 KOG1915 Cell cycle control pro 99.1 1.8E-06 3.8E-11 71.4 29.6 152 34-194 85-236 (677)
76 KOG1174 Anaphase-promoting com 99.1 9.7E-07 2.1E-11 71.6 27.4 292 18-319 190-501 (564)
77 KOG2376 Signal recognition par 99.1 4.3E-06 9.4E-11 70.9 31.3 321 2-338 27-506 (652)
78 KOG3785 Uncharacterized conser 99.1 7.9E-07 1.7E-11 70.7 24.7 319 2-341 37-445 (557)
79 KOG1156 N-terminal acetyltrans 99.0 2.7E-06 5.9E-11 72.8 29.1 226 4-240 24-257 (700)
80 PLN02789 farnesyltranstransfer 99.0 1E-06 2.2E-11 71.9 26.1 215 24-247 39-267 (320)
81 KOG1156 N-terminal acetyltrans 99.0 6.6E-06 1.4E-10 70.5 31.1 327 3-342 57-457 (700)
82 PF04733 Coatomer_E: Coatomer 99.0 2.8E-08 6.1E-13 79.9 16.7 136 140-286 112-251 (290)
83 KOG1070 rRNA processing protei 99.0 6E-07 1.3E-11 82.9 26.2 224 57-287 1455-1688(1710)
84 KOG4162 Predicted calmodulin-b 99.0 6E-06 1.3E-10 72.2 30.7 323 13-343 314-773 (799)
85 KOG4340 Uncharacterized conser 99.0 3.6E-07 7.9E-12 70.8 20.9 168 22-196 10-209 (459)
86 PF04733 Coatomer_E: Coatomer 99.0 2.9E-08 6.4E-13 79.8 15.4 226 21-264 34-265 (290)
87 KOG0548 Molecular co-chaperone 99.0 2.5E-06 5.4E-11 71.5 26.5 322 2-338 17-470 (539)
88 KOG1125 TPR repeat-containing 98.9 8.1E-07 1.8E-11 74.9 21.4 250 29-288 292-560 (579)
89 PRK04841 transcriptional regul 98.9 1.5E-05 3.3E-10 76.0 33.1 294 26-319 413-761 (903)
90 TIGR03302 OM_YfiO outer membra 98.9 1.1E-06 2.4E-11 69.5 20.9 188 22-229 33-232 (235)
91 PF12854 PPR_1: PPR repeat 98.9 2.5E-09 5.5E-14 55.3 3.8 32 230-261 2-33 (34)
92 PF12854 PPR_1: PPR repeat 98.9 2.4E-09 5.2E-14 55.4 3.7 34 16-49 1-34 (34)
93 KOG1125 TPR repeat-containing 98.9 1.4E-06 3E-11 73.5 21.3 217 68-291 293-519 (579)
94 TIGR03302 OM_YfiO outer membra 98.9 1.2E-06 2.5E-11 69.3 20.1 186 60-264 33-232 (235)
95 KOG1070 rRNA processing protei 98.8 7.4E-06 1.6E-10 76.1 25.9 246 10-260 1447-1696(1710)
96 PLN02789 farnesyltranstransfer 98.8 1.4E-05 3.1E-10 65.3 24.9 258 61-328 38-310 (320)
97 KOG4340 Uncharacterized conser 98.8 2.2E-06 4.8E-11 66.6 18.6 248 63-314 13-335 (459)
98 PRK10370 formate-dependent nit 98.8 2.1E-06 4.6E-11 65.3 18.5 120 108-230 52-174 (198)
99 KOG1128 Uncharacterized conser 98.8 9.2E-07 2E-11 76.6 18.1 216 24-264 400-616 (777)
100 PRK14720 transcript cleavage f 98.8 7.8E-06 1.7E-10 74.7 24.8 239 57-335 28-268 (906)
101 PRK10370 formate-dependent nit 98.8 4.2E-06 9.1E-11 63.7 19.9 119 73-194 52-173 (198)
102 KOG4162 Predicted calmodulin-b 98.8 1.6E-05 3.4E-10 69.7 25.3 82 4-89 461-542 (799)
103 PRK04841 transcriptional regul 98.8 3.4E-05 7.3E-10 73.7 30.4 309 32-343 384-750 (903)
104 COG4783 Putative Zn-dependent 98.8 1.9E-05 4.1E-10 65.7 23.5 139 105-264 316-454 (484)
105 KOG0624 dsRNA-activated protei 98.7 5.5E-05 1.2E-09 60.3 27.0 198 23-228 39-251 (504)
106 COG5010 TadD Flp pilus assembl 98.7 7.1E-06 1.5E-10 62.7 19.3 160 99-262 70-229 (257)
107 KOG0548 Molecular co-chaperone 98.7 1.6E-05 3.4E-10 66.8 22.7 303 30-343 10-411 (539)
108 KOG2047 mRNA splicing factor [ 98.7 0.00012 2.5E-09 63.3 30.8 145 24-176 104-292 (835)
109 KOG2047 mRNA splicing factor [ 98.7 0.00012 2.5E-09 63.3 29.6 284 2-291 362-679 (835)
110 PRK14720 transcript cleavage f 98.7 2.8E-05 6E-10 71.2 26.0 268 21-316 30-304 (906)
111 COG4783 Putative Zn-dependent 98.7 5.9E-05 1.3E-09 62.9 25.2 198 128-335 272-473 (484)
112 KOG0985 Vesicle coat protein c 98.7 0.00015 3.1E-09 66.0 28.8 267 8-312 968-1243(1666)
113 COG5010 TadD Flp pilus assembl 98.7 3.5E-06 7.5E-11 64.4 16.4 161 64-228 70-230 (257)
114 PRK15179 Vi polysaccharide bio 98.7 2.8E-05 6E-10 70.3 24.9 131 60-194 86-217 (694)
115 KOG3616 Selective LIM binding 98.7 1.9E-05 4E-10 69.1 22.4 130 172-314 739-875 (1636)
116 KOG3785 Uncharacterized conser 98.7 2.5E-05 5.4E-10 62.5 21.3 55 206-260 399-453 (557)
117 PRK15359 type III secretion sy 98.7 4.5E-06 9.7E-11 60.1 15.9 88 104-193 33-120 (144)
118 KOG1128 Uncharacterized conser 98.7 3.7E-06 8.1E-11 73.0 17.7 214 63-316 401-614 (777)
119 PRK15359 type III secretion sy 98.7 2.3E-06 5.1E-11 61.6 14.3 94 27-125 29-122 (144)
120 PRK15179 Vi polysaccharide bio 98.7 6.1E-06 1.3E-10 74.4 19.7 137 18-160 82-218 (694)
121 KOG0985 Vesicle coat protein c 98.6 5.7E-05 1.2E-09 68.4 24.6 274 4-316 1001-1306(1666)
122 KOG3081 Vesicle coat complex C 98.6 7.9E-05 1.7E-09 57.3 21.8 241 30-290 16-261 (299)
123 KOG3060 Uncharacterized conser 98.6 9.4E-05 2E-09 56.5 21.9 188 73-264 25-220 (289)
124 KOG0624 dsRNA-activated protei 98.6 0.00017 3.7E-09 57.6 27.3 275 3-291 54-362 (504)
125 KOG3060 Uncharacterized conser 98.6 0.00011 2.4E-09 56.1 21.6 85 73-159 99-183 (289)
126 TIGR02552 LcrH_SycD type III s 98.6 7.7E-06 1.7E-10 58.4 14.7 89 103-193 25-113 (135)
127 KOG3617 WD40 and TPR repeat-co 98.5 0.00011 2.5E-09 65.2 23.4 211 21-262 756-994 (1416)
128 TIGR02552 LcrH_SycD type III s 98.5 6.6E-06 1.4E-10 58.8 13.3 97 131-229 18-114 (135)
129 KOG1127 TPR repeat-containing 98.5 6.7E-05 1.5E-09 67.8 21.4 182 3-193 474-658 (1238)
130 KOG3616 Selective LIM binding 98.5 5.2E-05 1.1E-09 66.5 19.6 188 101-313 738-932 (1636)
131 TIGR00756 PPR pentatricopeptid 98.4 4.1E-07 8.8E-12 47.8 3.8 33 237-269 2-34 (35)
132 KOG3081 Vesicle coat complex C 98.4 6.3E-05 1.4E-09 57.8 16.6 193 61-264 73-271 (299)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 6.3E-05 1.4E-09 63.0 17.9 119 101-226 175-294 (395)
134 KOG2376 Signal recognition par 98.4 0.0011 2.3E-08 57.0 28.8 114 167-283 378-505 (652)
135 KOG3617 WD40 and TPR repeat-co 98.4 0.0001 2.2E-09 65.5 19.3 234 21-291 725-988 (1416)
136 PF13812 PPR_3: Pentatricopept 98.4 6.2E-07 1.3E-11 46.7 3.9 33 236-268 2-34 (34)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3.6E-05 7.9E-10 64.4 15.8 126 131-262 170-295 (395)
138 PF09976 TPR_21: Tetratricopep 98.4 3.9E-05 8.6E-10 55.4 14.2 118 35-155 24-143 (145)
139 TIGR00756 PPR pentatricopeptid 98.4 8.4E-07 1.8E-11 46.5 4.1 32 168-199 3-34 (35)
140 PF08579 RPM2: Mitochondrial r 98.4 8.9E-06 1.9E-10 53.7 9.5 89 238-337 28-117 (120)
141 PF10037 MRP-S27: Mitochondria 98.4 1.1E-05 2.4E-10 67.8 12.5 124 125-248 61-186 (429)
142 PF09976 TPR_21: Tetratricopep 98.3 5.8E-05 1.3E-09 54.5 14.6 13 109-121 62-74 (145)
143 PF13812 PPR_3: Pentatricopept 98.3 9.4E-07 2E-11 46.0 3.9 32 62-93 3-34 (34)
144 PF10037 MRP-S27: Mitochondria 98.3 1.6E-05 3.4E-10 66.9 12.9 119 60-178 66-186 (429)
145 KOG2053 Mitochondrial inherita 98.3 0.0023 4.9E-08 57.7 34.1 220 1-230 23-256 (932)
146 PF08579 RPM2: Mitochondrial r 98.3 2.3E-05 4.9E-10 51.8 10.2 79 63-141 28-115 (120)
147 KOG2053 Mitochondrial inherita 98.2 0.0015 3.3E-08 58.8 23.4 224 33-266 20-257 (932)
148 KOG1127 TPR repeat-containing 98.2 0.0032 6.9E-08 57.6 24.6 181 76-263 474-658 (1238)
149 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00017 3.6E-09 50.1 13.3 22 171-192 45-66 (119)
150 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00018 3.9E-09 49.9 13.4 59 101-159 45-105 (119)
151 PF05843 Suf: Suppressor of fo 98.1 0.00025 5.5E-09 57.3 15.2 143 61-208 2-148 (280)
152 PF05843 Suf: Suppressor of fo 98.1 0.00011 2.4E-09 59.3 13.1 130 97-229 3-136 (280)
153 PF01535 PPR: PPR repeat; Int 98.1 4.5E-06 9.8E-11 42.2 3.4 29 237-265 2-30 (31)
154 cd00189 TPR Tetratricopeptide 98.1 0.00013 2.8E-09 48.0 11.2 89 66-156 6-94 (100)
155 KOG1914 mRNA cleavage and poly 98.1 0.0021 4.5E-08 54.8 19.5 178 112-291 310-493 (656)
156 PRK10866 outer membrane biogen 98.1 0.0019 4E-08 51.0 18.7 177 66-262 38-239 (243)
157 cd00189 TPR Tetratricopeptide 98.0 0.00016 3.4E-09 47.6 10.9 90 101-192 6-95 (100)
158 PF01535 PPR: PPR repeat; Int 98.0 9.6E-06 2.1E-10 41.0 3.7 26 168-193 3-28 (31)
159 KOG1914 mRNA cleavage and poly 98.0 0.0067 1.5E-07 51.8 29.9 121 218-340 349-488 (656)
160 PF12895 Apc3: Anaphase-promot 98.0 1.8E-05 3.9E-10 51.2 5.5 19 102-120 32-50 (84)
161 PF12895 Apc3: Anaphase-promot 98.0 2.8E-05 6E-10 50.2 6.3 80 109-190 3-83 (84)
162 PRK15363 pathogenicity island 98.0 0.00038 8.2E-09 49.8 12.1 90 66-157 41-130 (157)
163 PRK02603 photosystem I assembl 98.0 0.00078 1.7E-08 50.3 14.6 92 58-150 33-126 (172)
164 PRK10866 outer membrane biogen 98.0 0.0049 1.1E-07 48.7 19.4 171 101-291 38-233 (243)
165 PF04840 Vps16_C: Vps16, C-ter 98.0 0.0072 1.6E-07 49.6 24.7 103 202-314 179-287 (319)
166 PRK15363 pathogenicity island 97.9 0.0014 3E-08 46.9 14.4 91 102-194 42-132 (157)
167 CHL00033 ycf3 photosystem I as 97.9 0.00039 8.6E-09 51.7 12.4 62 98-159 38-101 (168)
168 PLN03088 SGT1, suppressor of 97.9 0.00053 1.2E-08 57.6 14.3 95 65-161 7-101 (356)
169 PF06239 ECSIT: Evolutionarily 97.9 0.00027 5.9E-09 53.0 10.6 105 163-286 45-154 (228)
170 CHL00033 ycf3 photosystem I as 97.9 0.00052 1.1E-08 51.0 12.2 62 62-123 37-100 (168)
171 PLN03088 SGT1, suppressor of 97.9 0.00043 9.4E-09 58.1 12.8 92 137-230 9-100 (356)
172 PRK02603 photosystem I assembl 97.9 0.0014 3.1E-08 48.9 14.4 89 95-184 35-125 (172)
173 PF14938 SNAP: Soluble NSF att 97.9 0.0033 7.1E-08 51.1 17.4 130 133-262 117-264 (282)
174 PF06239 ECSIT: Evolutionarily 97.9 0.0004 8.6E-09 52.1 10.8 105 92-215 44-153 (228)
175 PRK10153 DNA-binding transcrip 97.8 0.0042 9.1E-08 54.7 18.0 63 130-194 420-482 (517)
176 PF14938 SNAP: Soluble NSF att 97.8 0.0046 1E-07 50.2 17.2 134 133-282 97-247 (282)
177 PF14559 TPR_19: Tetratricopep 97.8 0.00014 3.1E-09 44.7 6.4 61 212-275 3-63 (68)
178 PF13525 YfiO: Outer membrane 97.8 0.011 2.3E-07 45.5 18.2 62 27-89 10-71 (203)
179 PRK10153 DNA-binding transcrip 97.7 0.0052 1.1E-07 54.2 17.7 63 200-264 420-482 (517)
180 KOG0550 Molecular chaperone (D 97.7 0.021 4.5E-07 47.4 20.1 223 29-262 56-314 (486)
181 PF14559 TPR_19: Tetratricopep 97.7 0.00022 4.8E-09 43.8 6.3 50 108-158 4-53 (68)
182 PF13525 YfiO: Outer membrane 97.7 0.015 3.2E-07 44.7 19.3 45 241-287 147-195 (203)
183 PF13414 TPR_11: TPR repeat; P 97.6 0.00054 1.2E-08 42.2 7.7 56 99-155 7-63 (69)
184 KOG0550 Molecular chaperone (D 97.6 0.027 5.9E-07 46.7 20.2 254 2-264 64-350 (486)
185 KOG0553 TPR repeat-containing 97.6 0.0013 2.9E-08 51.7 10.6 99 106-208 92-190 (304)
186 PF13432 TPR_16: Tetratricopep 97.6 0.00057 1.2E-08 41.5 7.1 57 29-89 4-60 (65)
187 PF13432 TPR_16: Tetratricopep 97.6 0.00061 1.3E-08 41.4 7.2 53 139-192 6-58 (65)
188 PF12688 TPR_5: Tetratrico pep 97.6 0.0085 1.8E-07 41.3 13.3 19 138-156 46-64 (120)
189 PF12688 TPR_5: Tetratrico pep 97.6 0.011 2.3E-07 40.8 13.6 91 29-122 8-102 (120)
190 COG4235 Cytochrome c biogenesi 97.5 0.013 2.8E-07 46.5 15.5 120 119-243 146-268 (287)
191 KOG2280 Vacuolar assembly/sort 97.5 0.059 1.3E-06 48.2 24.7 24 61-84 508-531 (829)
192 KOG0553 TPR repeat-containing 97.5 0.0019 4.1E-08 50.9 10.7 91 68-160 89-179 (304)
193 PF13414 TPR_11: TPR repeat; P 97.5 0.0011 2.4E-08 40.7 7.8 65 129-194 2-67 (69)
194 KOG1538 Uncharacterized conser 97.5 0.018 3.9E-07 50.5 16.8 260 20-318 554-846 (1081)
195 PF03704 BTAD: Bacterial trans 97.4 0.017 3.6E-07 41.8 14.0 70 97-167 64-138 (146)
196 COG4235 Cytochrome c biogenesi 97.4 0.014 3E-07 46.4 14.1 125 149-278 141-268 (287)
197 COG4700 Uncharacterized protei 97.4 0.028 6.1E-07 41.3 18.1 123 128-254 87-212 (251)
198 PF03704 BTAD: Bacterial trans 97.4 0.002 4.4E-08 46.6 8.7 72 131-203 63-139 (146)
199 KOG2796 Uncharacterized conser 97.3 0.049 1.1E-06 42.5 18.2 130 99-229 181-315 (366)
200 KOG1130 Predicted G-alpha GTPa 97.3 0.004 8.6E-08 51.4 10.5 116 30-145 25-150 (639)
201 PRK10803 tol-pal system protei 97.3 0.012 2.5E-07 47.0 13.1 97 133-229 146-246 (263)
202 PRK10803 tol-pal system protei 97.3 0.017 3.7E-07 46.1 13.8 98 97-194 145-246 (263)
203 PF13281 DUF4071: Domain of un 97.2 0.095 2.1E-06 43.8 19.5 161 102-264 148-334 (374)
204 PF13371 TPR_9: Tetratricopept 97.2 0.0028 6E-08 39.5 7.1 56 208-264 3-58 (73)
205 PF12921 ATP13: Mitochondrial 97.1 0.0075 1.6E-07 42.0 9.2 48 231-278 48-96 (126)
206 KOG2041 WD40 repeat protein [G 97.1 0.056 1.2E-06 48.0 15.9 28 60-87 692-719 (1189)
207 PF12921 ATP13: Mitochondrial 97.1 0.0095 2.1E-07 41.5 9.4 98 129-246 1-99 (126)
208 KOG2796 Uncharacterized conser 97.1 0.088 1.9E-06 41.1 20.7 145 131-278 178-327 (366)
209 PF13371 TPR_9: Tetratricopept 97.1 0.0052 1.1E-07 38.2 7.6 55 104-159 4-58 (73)
210 COG4700 Uncharacterized protei 97.1 0.066 1.4E-06 39.5 18.2 134 91-226 85-219 (251)
211 PF04840 Vps16_C: Vps16, C-ter 97.1 0.12 2.7E-06 42.5 24.5 122 167-314 179-300 (319)
212 PF13424 TPR_12: Tetratricopep 97.0 0.0026 5.6E-08 40.2 5.9 66 23-88 6-74 (78)
213 PRK15331 chaperone protein Sic 97.0 0.058 1.3E-06 39.1 13.0 87 105-193 47-133 (165)
214 PF13281 DUF4071: Domain of un 97.0 0.16 3.4E-06 42.6 20.5 80 131-210 142-227 (374)
215 KOG1130 Predicted G-alpha GTPa 96.9 0.037 8E-07 46.0 12.7 40 5-45 35-78 (639)
216 PF13170 DUF4003: Protein of u 96.9 0.074 1.6E-06 43.3 14.5 87 4-92 79-175 (297)
217 PRK15331 chaperone protein Sic 96.9 0.067 1.5E-06 38.8 12.3 90 67-158 44-133 (165)
218 PF08631 SPO22: Meiosis protei 96.8 0.2 4.3E-06 40.7 25.1 166 32-200 3-192 (278)
219 KOG0543 FKBP-type peptidyl-pro 96.7 0.1 2.2E-06 43.4 13.8 96 97-194 259-355 (397)
220 PF13424 TPR_12: Tetratricopep 96.7 0.0059 1.3E-07 38.6 5.6 61 131-191 6-72 (78)
221 KOG2280 Vacuolar assembly/sort 96.6 0.48 1E-05 42.8 21.0 265 21-314 506-795 (829)
222 COG3898 Uncharacterized membra 96.6 0.33 7.1E-06 40.4 24.7 59 203-263 332-391 (531)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.14 3E-06 43.6 13.9 66 57-124 72-141 (453)
224 PF04053 Coatomer_WDAD: Coatom 96.6 0.095 2.1E-06 45.4 13.2 160 29-225 268-427 (443)
225 KOG2041 WD40 repeat protein [G 96.5 0.57 1.2E-05 42.1 22.0 53 129-190 851-903 (1189)
226 PF10300 DUF3808: Protein of u 96.5 0.34 7.4E-06 42.6 16.4 165 62-229 190-376 (468)
227 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.26 5.7E-06 41.7 14.2 145 62-210 399-545 (660)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.16 3.5E-06 43.3 13.2 65 94-159 74-141 (453)
229 smart00299 CLH Clathrin heavy 96.4 0.22 4.7E-06 35.6 13.8 41 101-142 13-53 (140)
230 KOG3941 Intermediate in Toll s 96.4 0.055 1.2E-06 42.6 9.6 88 249-339 86-173 (406)
231 PF08631 SPO22: Meiosis protei 96.4 0.43 9.2E-06 38.8 24.9 161 71-235 4-192 (278)
232 KOG2610 Uncharacterized conser 96.3 0.17 3.6E-06 41.1 12.3 156 141-315 114-273 (491)
233 COG1729 Uncharacterized protei 96.3 0.091 2E-06 41.3 10.5 97 167-264 144-244 (262)
234 smart00299 CLH Clathrin heavy 96.3 0.25 5.5E-06 35.3 13.7 127 168-336 10-137 (140)
235 KOG0543 FKBP-type peptidyl-pro 96.2 0.17 3.6E-06 42.2 11.8 139 67-229 215-355 (397)
236 KOG3941 Intermediate in Toll s 96.1 0.08 1.7E-06 41.8 9.4 105 92-215 64-173 (406)
237 KOG1538 Uncharacterized conser 96.0 0.58 1.3E-05 41.7 14.8 89 130-229 747-846 (1081)
238 COG4649 Uncharacterized protei 96.0 0.4 8.7E-06 35.0 13.0 140 21-163 58-200 (221)
239 COG5107 RNA14 Pre-mRNA 3'-end 95.9 0.92 2E-05 38.6 30.5 79 7-91 29-107 (660)
240 PF04053 Coatomer_WDAD: Coatom 95.9 0.2 4.4E-06 43.4 11.9 132 105-264 271-402 (443)
241 PF13512 TPR_18: Tetratricopep 95.9 0.39 8.5E-06 34.0 12.1 83 26-109 14-96 (142)
242 PF09205 DUF1955: Domain of un 95.8 0.37 7.9E-06 33.5 14.0 62 204-266 90-151 (161)
243 COG3118 Thioredoxin domain-con 95.8 0.75 1.6E-05 36.9 15.9 122 31-159 143-265 (304)
244 COG1729 Uncharacterized protei 95.8 0.27 5.9E-06 38.7 11.0 99 61-160 143-245 (262)
245 COG3629 DnrI DNA-binding trans 95.7 0.19 4.1E-06 40.2 9.9 77 202-279 155-236 (280)
246 PF13428 TPR_14: Tetratricopep 95.6 0.056 1.2E-06 29.6 5.1 27 25-51 4-30 (44)
247 PF13428 TPR_14: Tetratricopep 95.5 0.074 1.6E-06 29.1 5.4 24 65-88 6-29 (44)
248 COG4649 Uncharacterized protei 95.5 0.64 1.4E-05 34.1 13.6 138 61-199 60-201 (221)
249 COG4105 ComL DNA uptake lipopr 95.5 0.91 2E-05 35.6 19.5 53 172-225 174-229 (254)
250 KOG4555 TPR repeat-containing 95.5 0.52 1.1E-05 32.7 11.1 90 31-125 52-145 (175)
251 COG3629 DnrI DNA-binding trans 95.4 0.26 5.7E-06 39.4 10.0 77 167-244 155-236 (280)
252 PF10602 RPN7: 26S proteasome 95.4 0.32 6.9E-06 36.4 10.0 64 131-194 37-102 (177)
253 COG3118 Thioredoxin domain-con 95.3 1.2 2.5E-05 35.8 16.4 51 106-157 145-195 (304)
254 KOG1941 Acetylcholine receptor 95.3 1 2.2E-05 37.2 12.8 223 3-227 22-273 (518)
255 PF10602 RPN7: 26S proteasome 95.2 0.25 5.5E-06 36.9 9.0 61 25-86 39-99 (177)
256 KOG2114 Vacuolar assembly/sort 95.2 0.67 1.5E-05 42.5 12.7 120 27-157 339-458 (933)
257 PF13512 TPR_18: Tetratricopep 95.2 0.72 1.6E-05 32.7 12.3 26 134-159 51-76 (142)
258 KOG2114 Vacuolar assembly/sort 95.2 0.75 1.6E-05 42.2 12.9 152 98-262 337-490 (933)
259 COG0457 NrfG FOG: TPR repeat [ 95.2 1.1 2.4E-05 34.7 25.4 226 35-264 36-265 (291)
260 KOG4555 TPR repeat-containing 95.1 0.72 1.6E-05 32.0 10.0 92 69-161 52-146 (175)
261 KOG2610 Uncharacterized conser 94.9 1.8 3.9E-05 35.5 16.5 152 72-225 115-272 (491)
262 PRK11906 transcriptional regul 94.7 2.5 5.4E-05 36.5 15.0 113 75-190 319-432 (458)
263 PF07035 Mic1: Colon cancer-as 94.4 1.5 3.2E-05 32.3 15.2 134 80-228 14-148 (167)
264 KOG4570 Uncharacterized conser 94.4 0.44 9.4E-06 38.4 8.5 107 17-125 59-165 (418)
265 PF13176 TPR_7: Tetratricopept 94.3 0.13 2.9E-06 26.6 4.1 24 133-156 2-25 (36)
266 PF09205 DUF1955: Domain of un 94.3 1.2 2.7E-05 31.0 12.7 138 34-196 14-151 (161)
267 PRK11906 transcriptional regul 94.2 3.3 7.1E-05 35.8 16.1 114 109-227 318-434 (458)
268 PF00637 Clathrin: Region in C 94.2 0.0016 3.6E-08 46.9 -4.7 122 206-340 13-141 (143)
269 PF13431 TPR_17: Tetratricopep 94.2 0.083 1.8E-06 27.0 3.0 31 119-150 3-33 (34)
270 PF00637 Clathrin: Region in C 94.2 0.0011 2.4E-08 47.8 -5.7 53 102-154 14-66 (143)
271 PF13170 DUF4003: Protein of u 94.2 2.7 5.7E-05 34.5 21.8 22 78-99 80-101 (297)
272 PF11207 DUF2989: Protein of u 94.0 0.7 1.5E-05 34.9 8.7 80 31-115 116-198 (203)
273 PF13176 TPR_7: Tetratricopept 94.0 0.13 2.9E-06 26.6 3.7 23 63-85 2-24 (36)
274 PF10300 DUF3808: Protein of u 93.9 4.3 9.3E-05 35.9 24.2 231 101-334 194-463 (468)
275 COG4105 ComL DNA uptake lipopr 93.8 2.6 5.7E-05 33.2 22.1 54 107-160 46-101 (254)
276 KOG4570 Uncharacterized conser 93.8 1.2 2.7E-05 36.0 10.0 48 146-193 116-163 (418)
277 PF09613 HrpB1_HrpK: Bacterial 93.7 2 4.3E-05 31.2 12.2 51 107-158 22-72 (160)
278 PF04184 ST7: ST7 protein; In 93.6 4.5 9.7E-05 35.2 17.0 64 131-194 260-324 (539)
279 KOG1941 Acetylcholine receptor 93.6 3.7 7.9E-05 34.2 15.9 230 32-262 16-273 (518)
280 KOG1920 IkappaB kinase complex 93.4 8 0.00017 37.5 22.1 20 242-261 972-991 (1265)
281 KOG1585 Protein required for f 93.4 3 6.6E-05 32.6 16.8 26 24-49 33-58 (308)
282 PF09613 HrpB1_HrpK: Bacterial 93.2 2.4 5.1E-05 30.8 12.1 18 176-193 55-72 (160)
283 COG0457 NrfG FOG: TPR repeat [ 93.2 3 6.6E-05 32.1 27.7 214 74-291 37-257 (291)
284 COG3898 Uncharacterized membra 93.2 4.6 0.0001 34.0 30.8 280 25-322 85-396 (531)
285 cd00923 Cyt_c_Oxidase_Va Cytoc 92.8 1.3 2.9E-05 28.8 7.2 49 180-228 22-70 (103)
286 PF04184 ST7: ST7 protein; In 92.4 7.1 0.00015 34.1 16.2 79 166-244 260-340 (539)
287 PF02284 COX5A: Cytochrome c o 92.4 1.3 2.8E-05 29.2 6.9 47 183-229 28-74 (108)
288 KOG1550 Extracellular protein 92.3 8.6 0.00019 34.9 24.7 182 3-195 228-427 (552)
289 KOG1586 Protein required for f 92.1 4.6 0.0001 31.4 12.0 25 299-323 164-188 (288)
290 PF00515 TPR_1: Tetratricopept 91.9 0.74 1.6E-05 23.1 4.6 28 132-159 3-30 (34)
291 cd00923 Cyt_c_Oxidase_Va Cytoc 91.7 2.6 5.6E-05 27.6 8.1 63 215-278 22-84 (103)
292 COG4785 NlpI Lipoprotein NlpI, 91.5 5.3 0.00011 30.8 12.2 29 236-264 238-266 (297)
293 PF07079 DUF1347: Protein of u 91.4 8.6 0.00019 33.2 27.5 49 215-263 274-326 (549)
294 PF13431 TPR_17: Tetratricopep 91.4 0.35 7.7E-06 24.6 3.0 21 234-254 12-32 (34)
295 PF07035 Mic1: Colon cancer-as 91.1 4.8 0.0001 29.6 15.8 132 116-263 15-148 (167)
296 PF07719 TPR_2: Tetratricopept 91.1 0.93 2E-05 22.6 4.5 28 132-159 3-30 (34)
297 PF02284 COX5A: Cytochrome c o 91.0 1.1 2.4E-05 29.5 5.5 61 217-278 27-87 (108)
298 PF13374 TPR_10: Tetratricopep 90.8 0.84 1.8E-05 24.1 4.4 27 131-157 3-29 (42)
299 PF11207 DUF2989: Protein of u 90.5 4.7 0.0001 30.6 9.2 78 106-185 118-198 (203)
300 KOG4234 TPR repeat-containing 90.4 6.4 0.00014 29.9 9.9 88 106-194 106-197 (271)
301 KOG1585 Protein required for f 89.7 8.6 0.00019 30.3 19.6 203 60-289 31-246 (308)
302 PF13374 TPR_10: Tetratricopep 89.6 0.93 2E-05 24.0 4.0 28 61-88 3-30 (42)
303 PF00515 TPR_1: Tetratricopept 89.6 0.99 2.1E-05 22.7 3.8 27 62-88 3-29 (34)
304 KOG1550 Extracellular protein 89.6 16 0.00035 33.2 23.9 182 38-230 228-427 (552)
305 COG4785 NlpI Lipoprotein NlpI, 89.4 8.4 0.00018 29.7 17.2 189 108-320 78-268 (297)
306 PF07719 TPR_2: Tetratricopept 89.3 0.82 1.8E-05 22.9 3.4 27 237-263 3-29 (34)
307 COG2909 MalT ATP-dependent tra 88.8 21 0.00046 33.7 25.2 181 139-319 424-648 (894)
308 cd08819 CARD_MDA5_2 Caspase ac 88.5 3.6 7.7E-05 26.3 6.2 64 42-114 22-85 (88)
309 PF13929 mRNA_stabil: mRNA sta 88.2 12 0.00027 30.2 15.7 61 128-188 200-261 (292)
310 PRK09687 putative lyase; Provi 87.9 13 0.00029 30.2 26.1 234 20-281 35-278 (280)
311 PF13181 TPR_8: Tetratricopept 87.9 2.1 4.5E-05 21.3 4.4 27 132-158 3-29 (34)
312 COG4455 ImpE Protein of avirul 87.7 7 0.00015 30.1 8.3 77 167-244 3-81 (273)
313 TIGR03504 FimV_Cterm FimV C-te 87.6 1.9 4.1E-05 23.5 4.1 23 241-263 5-27 (44)
314 TIGR02561 HrpB1_HrpK type III 87.6 8.5 0.00018 27.6 10.6 20 140-159 54-73 (153)
315 KOG4648 Uncharacterized conser 87.6 1.8 3.9E-05 35.6 5.6 52 208-260 105-156 (536)
316 KOG0276 Vesicle coat complex C 87.4 12 0.00026 33.6 10.7 133 23-191 615-747 (794)
317 COG3947 Response regulator con 87.4 14 0.00031 29.9 15.7 70 202-272 281-355 (361)
318 COG4455 ImpE Protein of avirul 87.3 6.4 0.00014 30.3 8.0 75 63-138 4-80 (273)
319 PF07163 Pex26: Pex26 protein; 87.2 13 0.00028 30.0 9.9 56 102-157 90-145 (309)
320 PF07163 Pex26: Pex26 protein; 87.2 11 0.00023 30.3 9.4 123 31-153 44-181 (309)
321 cd08819 CARD_MDA5_2 Caspase ac 86.9 6.2 0.00013 25.3 6.6 65 184-254 21-85 (88)
322 PF07079 DUF1347: Protein of u 86.9 20 0.00043 31.1 31.7 77 32-108 89-180 (549)
323 PHA02875 ankyrin repeat protei 86.7 20 0.00044 31.1 15.4 203 7-235 15-230 (413)
324 PF07721 TPR_4: Tetratricopept 86.3 1.4 3.1E-05 20.6 2.9 20 240-259 6-25 (26)
325 PF13174 TPR_6: Tetratricopept 86.2 2.2 4.9E-05 20.9 3.9 24 136-159 6-29 (33)
326 TIGR03504 FimV_Cterm FimV C-te 86.0 2.9 6.2E-05 22.8 4.3 27 294-320 4-30 (44)
327 PF04097 Nic96: Nup93/Nic96; 85.9 29 0.00063 32.1 19.7 42 28-73 117-158 (613)
328 KOG1920 IkappaB kinase complex 85.6 39 0.00084 33.3 19.4 31 92-123 788-820 (1265)
329 PF13181 TPR_8: Tetratricopept 85.6 2.7 5.8E-05 20.9 4.0 27 24-50 3-29 (34)
330 PF02259 FAT: FAT domain; Int 85.4 21 0.00045 30.0 21.0 63 201-263 147-212 (352)
331 PF10366 Vps39_1: Vacuolar sor 85.4 5.1 0.00011 27.1 6.2 26 292-317 42-67 (108)
332 KOG0276 Vesicle coat complex C 84.8 19 0.00042 32.4 10.6 101 105-226 647-747 (794)
333 TIGR02561 HrpB1_HrpK type III 84.4 13 0.00028 26.8 13.1 97 212-316 22-120 (153)
334 COG1747 Uncharacterized N-term 84.4 29 0.00062 30.7 24.9 177 61-245 67-249 (711)
335 KOG1464 COP9 signalosome, subu 83.6 21 0.00046 28.6 18.1 183 2-187 42-253 (440)
336 PRK15180 Vi polysaccharide bio 82.8 32 0.0007 30.1 13.4 90 70-161 333-422 (831)
337 KOG4234 TPR repeat-containing 82.4 20 0.00043 27.4 9.8 89 140-229 105-197 (271)
338 KOG1464 COP9 signalosome, subu 82.4 24 0.00052 28.3 21.2 205 16-221 20-252 (440)
339 PF13929 mRNA_stabil: mRNA sta 82.2 25 0.00055 28.5 18.5 131 146-276 144-284 (292)
340 KOG1258 mRNA processing protei 82.2 38 0.00082 30.5 19.3 185 59-249 296-489 (577)
341 PRK15180 Vi polysaccharide bio 82.2 34 0.00075 30.0 13.3 122 70-195 299-421 (831)
342 cd00280 TRFH Telomeric Repeat 81.9 19 0.00042 26.9 12.2 93 216-316 85-184 (200)
343 KOG4648 Uncharacterized conser 81.7 11 0.00024 31.3 7.6 53 138-191 105-157 (536)
344 PF11848 DUF3368: Domain of un 81.7 7.1 0.00015 21.8 4.9 37 297-333 10-46 (48)
345 PRK09687 putative lyase; Provi 81.5 28 0.0006 28.4 25.5 232 60-335 37-278 (280)
346 KOG2063 Vacuolar assembly/sort 81.0 55 0.0012 31.5 12.8 116 132-247 506-638 (877)
347 TIGR02508 type_III_yscG type I 80.6 14 0.0003 24.5 8.0 78 181-265 21-98 (115)
348 PF10345 Cohesin_load: Cohesin 80.5 49 0.0011 30.7 19.1 196 21-227 29-252 (608)
349 PF06552 TOM20_plant: Plant sp 80.5 22 0.00047 26.6 8.4 114 4-126 8-138 (186)
350 COG1747 Uncharacterized N-term 80.0 43 0.00094 29.7 25.3 180 92-279 63-248 (711)
351 COG0735 Fur Fe2+/Zn2+ uptake r 79.7 12 0.00025 27.0 6.6 23 67-89 27-49 (145)
352 PF08424 NRDE-2: NRDE-2, neces 79.2 36 0.00079 28.4 15.4 119 76-196 47-185 (321)
353 COG0735 Fur Fe2+/Zn2+ uptake r 78.8 15 0.00033 26.4 7.0 62 82-144 8-69 (145)
354 KOG4077 Cytochrome c oxidase, 78.7 18 0.0004 25.1 6.7 46 183-228 67-112 (149)
355 KOG4077 Cytochrome c oxidase, 78.6 20 0.00042 25.0 7.0 42 222-263 71-112 (149)
356 PRK10564 maltose regulon perip 78.3 6.2 0.00013 32.1 5.2 30 25-54 260-289 (303)
357 PF10579 Rapsyn_N: Rapsyn N-te 78.2 9.4 0.0002 24.0 4.9 48 34-82 18-65 (80)
358 KOG0686 COP9 signalosome, subu 78.2 43 0.00093 28.7 14.1 62 61-122 151-214 (466)
359 PHA02875 ankyrin repeat protei 77.7 30 0.00065 30.0 9.9 203 42-271 15-231 (413)
360 PF07575 Nucleopor_Nup85: Nup8 76.7 30 0.00066 31.6 9.9 128 198-328 403-534 (566)
361 KOG0686 COP9 signalosome, subu 76.4 49 0.0011 28.4 14.0 66 23-89 151-216 (466)
362 smart00028 TPR Tetratricopepti 76.2 6.4 0.00014 18.4 3.5 25 133-157 4-28 (34)
363 COG2976 Uncharacterized protei 76.1 32 0.0007 26.2 14.4 89 172-265 96-189 (207)
364 KOG1258 mRNA processing protei 75.6 62 0.0014 29.2 31.5 168 165-338 297-489 (577)
365 PF13762 MNE1: Mitochondrial s 75.5 27 0.00059 25.1 9.9 83 61-143 40-128 (145)
366 PF10579 Rapsyn_N: Rapsyn N-te 75.5 17 0.00036 22.9 5.4 12 137-148 50-61 (80)
367 PF11846 DUF3366: Domain of un 75.3 21 0.00046 27.1 7.4 33 197-229 141-173 (193)
368 PRK10564 maltose regulon perip 74.7 8.1 0.00017 31.4 5.0 42 57-98 254-295 (303)
369 KOG2066 Vacuolar assembly/sort 73.8 80 0.0017 29.7 19.0 76 29-110 363-438 (846)
370 PRK13342 recombination factor 73.5 62 0.0013 28.3 19.0 21 109-129 244-264 (413)
371 PF12862 Apc5: Anaphase-promot 73.2 21 0.00045 23.3 6.1 23 66-88 47-69 (94)
372 KOG4507 Uncharacterized conser 72.2 41 0.00089 30.4 8.9 89 72-161 619-707 (886)
373 PF04190 DUF410: Protein of un 72.0 51 0.0011 26.6 18.4 81 234-318 89-170 (260)
374 PF11663 Toxin_YhaV: Toxin wit 71.9 5.8 0.00013 27.8 3.2 29 144-174 109-137 (140)
375 PF02259 FAT: FAT domain; Int 71.9 59 0.0013 27.3 23.1 64 165-228 146-212 (352)
376 KOG2063 Vacuolar assembly/sort 71.8 1E+02 0.0022 29.9 19.2 119 24-142 506-638 (877)
377 PF14689 SPOB_a: Sensor_kinase 71.5 15 0.00033 21.8 4.6 45 217-263 7-51 (62)
378 COG5108 RPO41 Mitochondrial DN 71.4 46 0.001 30.6 9.1 77 27-107 33-115 (1117)
379 PF11846 DUF3366: Domain of un 71.3 34 0.00073 26.0 7.7 31 128-158 142-172 (193)
380 PF07575 Nucleopor_Nup85: Nup8 70.7 27 0.00058 32.0 8.1 64 163-228 403-466 (566)
381 PF12926 MOZART2: Mitotic-spin 70.0 26 0.00057 22.4 6.4 44 43-89 29-72 (88)
382 PF08424 NRDE-2: NRDE-2, neces 69.7 66 0.0014 26.9 17.2 119 111-231 47-185 (321)
383 PF14689 SPOB_a: Sensor_kinase 69.2 19 0.00041 21.4 4.7 24 205-228 28-51 (62)
384 PF11848 DUF3368: Domain of un 69.1 18 0.00038 20.2 4.8 18 113-130 20-37 (48)
385 PHA02537 M terminase endonucle 68.9 55 0.0012 25.8 10.3 109 210-326 93-215 (230)
386 PRK11639 zinc uptake transcrip 68.4 36 0.00079 25.3 7.0 34 111-144 41-74 (169)
387 COG3947 Response regulator con 68.3 65 0.0014 26.4 17.3 58 168-226 282-339 (361)
388 PF14853 Fis1_TPR_C: Fis1 C-te 68.2 20 0.00044 20.5 4.6 36 295-332 7-42 (53)
389 cd00280 TRFH Telomeric Repeat 67.1 52 0.0011 24.8 8.3 55 251-317 85-139 (200)
390 TIGR02508 type_III_yscG type I 65.9 37 0.0008 22.6 8.1 51 139-195 48-98 (115)
391 KOG4521 Nuclear pore complex, 64.4 1.6E+02 0.0035 29.5 14.0 126 60-187 983-1124(1480)
392 KOG0890 Protein kinase of the 63.6 2.3E+02 0.0049 31.0 22.7 50 270-319 1670-1732(2382)
393 COG5159 RPN6 26S proteasome re 63.5 82 0.0018 25.8 16.5 162 65-226 8-191 (421)
394 KOG4507 Uncharacterized conser 63.3 34 0.00074 30.9 6.7 86 178-264 620-705 (886)
395 PRK11619 lytic murein transgly 63.1 1.3E+02 0.0029 28.1 21.9 116 144-262 255-373 (644)
396 PF11663 Toxin_YhaV: Toxin wit 63.0 9.5 0.00021 26.8 2.8 31 73-105 108-138 (140)
397 PF10345 Cohesin_load: Cohesin 63.0 1.3E+02 0.0028 28.0 30.5 188 4-192 38-252 (608)
398 COG5108 RPO41 Mitochondrial DN 62.9 52 0.0011 30.3 7.8 48 170-217 33-82 (1117)
399 KOG4521 Nuclear pore complex, 62.8 1.7E+02 0.0037 29.3 12.4 125 23-153 984-1125(1480)
400 PF13762 MNE1: Mitochondrial s 62.7 55 0.0012 23.6 12.7 81 133-213 42-128 (145)
401 COG2909 MalT ATP-dependent tra 61.9 1.5E+02 0.0034 28.5 22.8 222 70-291 425-680 (894)
402 PRK09462 fur ferric uptake reg 61.3 59 0.0013 23.4 7.1 35 110-144 32-66 (148)
403 PF09477 Type_III_YscG: Bacter 61.2 48 0.001 22.4 9.8 81 178-265 19-99 (116)
404 PF14669 Asp_Glu_race_2: Putat 61.0 72 0.0016 24.3 13.8 72 16-87 2-78 (233)
405 KOG3636 Uncharacterized conser 60.9 1.1E+02 0.0025 26.6 15.1 88 193-281 176-271 (669)
406 KOG0403 Neoplastic transformat 60.3 1.2E+02 0.0026 26.6 17.9 47 292-339 512-558 (645)
407 PF12796 Ank_2: Ankyrin repeat 60.2 33 0.00071 21.8 5.0 14 32-45 4-17 (89)
408 COG2976 Uncharacterized protei 59.7 77 0.0017 24.2 17.1 91 103-195 97-189 (207)
409 PF14853 Fis1_TPR_C: Fis1 C-te 59.2 32 0.00069 19.7 4.2 30 241-272 7-36 (53)
410 KOG4567 GTPase-activating prot 58.9 89 0.0019 25.8 7.8 71 115-190 263-343 (370)
411 PF04097 Nic96: Nup93/Nic96; 58.7 1.6E+02 0.0034 27.5 14.2 45 62-108 114-158 (613)
412 cd08332 CARD_CASP2 Caspase act 58.5 48 0.001 21.5 7.5 32 36-74 48-79 (90)
413 PF09454 Vps23_core: Vps23 cor 58.4 31 0.00068 20.8 4.2 47 94-141 7-53 (65)
414 PRK09462 fur ferric uptake reg 58.1 64 0.0014 23.2 6.7 59 48-110 8-67 (148)
415 smart00804 TAP_C C-terminal do 57.9 10 0.00023 22.6 2.1 20 2-21 40-60 (63)
416 PRK11619 lytic murein transgly 57.9 1.7E+02 0.0036 27.5 28.1 56 170-226 317-372 (644)
417 PF09454 Vps23_core: Vps23 cor 57.3 41 0.00088 20.3 4.8 46 61-107 9-54 (65)
418 PF14669 Asp_Glu_race_2: Putat 56.6 87 0.0019 23.9 15.3 57 204-260 136-206 (233)
419 PF10366 Vps39_1: Vacuolar sor 56.2 61 0.0013 21.9 7.8 26 168-193 42-67 (108)
420 PF00244 14-3-3: 14-3-3 protei 55.8 1E+02 0.0022 24.5 11.8 59 100-158 6-65 (236)
421 cd08790 DED_DEDD Death Effecto 55.7 22 0.00048 23.3 3.4 58 33-95 35-92 (97)
422 cd07153 Fur_like Ferric uptake 55.5 27 0.00058 23.8 4.2 47 295-341 6-52 (116)
423 KOG4567 GTPase-activating prot 55.2 1.2E+02 0.0026 25.1 9.1 81 220-314 263-343 (370)
424 KOG3807 Predicted membrane pro 55.2 1.3E+02 0.0027 25.3 9.3 17 107-123 287-303 (556)
425 PRK11639 zinc uptake transcrip 55.1 85 0.0018 23.3 7.4 45 122-167 18-62 (169)
426 cd08326 CARD_CASP9 Caspase act 54.9 54 0.0012 21.0 7.6 36 34-76 42-77 (84)
427 PF09670 Cas_Cas02710: CRISPR- 54.3 1.4E+02 0.0031 25.7 10.2 54 140-194 141-198 (379)
428 cd07153 Fur_like Ferric uptake 53.5 38 0.00082 23.0 4.7 45 206-250 6-50 (116)
429 KOG2066 Vacuolar assembly/sort 53.1 2.1E+02 0.0045 27.2 23.1 143 3-159 372-534 (846)
430 PF03943 TAP_C: TAP C-terminal 53.0 7.8 0.00017 22.0 1.0 21 2-22 28-49 (51)
431 PRK09857 putative transposase; 52.9 1.3E+02 0.0028 24.8 9.4 66 203-269 209-274 (292)
432 PF00244 14-3-3: 14-3-3 protei 52.8 1.2E+02 0.0025 24.2 12.8 60 64-123 5-65 (236)
433 PF01475 FUR: Ferric uptake re 52.4 24 0.00051 24.3 3.5 48 294-341 12-59 (120)
434 PF02184 HAT: HAT (Half-A-TPR) 52.3 23 0.00051 17.8 2.4 24 304-329 2-25 (32)
435 KOG2396 HAT (Half-A-TPR) repea 52.0 1.8E+02 0.0038 26.1 20.9 87 198-287 457-547 (568)
436 PF06552 TOM20_plant: Plant sp 51.9 1E+02 0.0022 23.3 9.9 42 181-230 96-137 (186)
437 PF10475 DUF2450: Protein of u 51.5 1.4E+02 0.003 24.6 10.9 26 168-193 130-155 (291)
438 COG0790 FOG: TPR repeat, SEL1 51.2 1.3E+02 0.0029 24.5 23.7 190 34-239 53-276 (292)
439 PF12862 Apc5: Anaphase-promot 51.1 67 0.0014 20.9 6.1 22 136-157 47-68 (94)
440 PF11817 Foie-gras_1: Foie gra 50.7 1.1E+02 0.0024 24.4 7.5 57 170-226 183-244 (247)
441 KOG2062 26S proteasome regulat 50.7 2.3E+02 0.0049 26.9 11.7 27 168-194 213-239 (929)
442 PF11817 Foie-gras_1: Foie gra 50.6 1.2E+02 0.0025 24.3 7.6 52 206-257 184-240 (247)
443 PF13934 ELYS: Nuclear pore co 50.1 1.2E+02 0.0027 23.8 14.2 55 136-193 114-168 (226)
444 PF02847 MA3: MA3 domain; Int 49.5 79 0.0017 21.3 7.4 22 135-156 7-28 (113)
445 PF09986 DUF2225: Uncharacteri 49.4 93 0.002 24.2 6.6 54 3-56 141-199 (214)
446 PF01475 FUR: Ferric uptake re 49.3 35 0.00076 23.5 4.0 46 240-285 12-57 (120)
447 PF05944 Phage_term_smal: Phag 48.9 94 0.002 22.0 7.4 30 98-127 51-80 (132)
448 PF12926 MOZART2: Mitotic-spin 47.9 74 0.0016 20.5 7.8 42 151-192 29-70 (88)
449 TIGR01228 hutU urocanate hydra 47.7 2.1E+02 0.0045 25.6 10.2 66 36-117 208-278 (545)
450 PF03745 DUF309: Domain of unk 46.9 61 0.0013 19.3 4.7 14 73-86 12-25 (62)
451 PF09670 Cas_Cas02710: CRISPR- 46.5 1.9E+02 0.0042 24.9 11.6 57 172-229 138-198 (379)
452 PF02847 MA3: MA3 domain; Int 46.1 90 0.002 21.0 7.6 21 66-86 8-28 (113)
453 PRK14700 recombination factor 45.6 1.7E+02 0.0038 24.1 10.4 155 4-158 67-229 (300)
454 PRK12798 chemotaxis protein; R 45.3 2.1E+02 0.0045 25.0 19.6 191 73-268 125-328 (421)
455 PRK10941 hypothetical protein; 45.1 1.7E+02 0.0037 23.8 10.0 78 203-281 184-262 (269)
456 PF12968 DUF3856: Domain of Un 44.9 1E+02 0.0023 21.4 7.3 67 234-315 54-126 (144)
457 PF02607 B12-binding_2: B12 bi 44.2 39 0.00085 21.0 3.3 41 300-340 12-52 (79)
458 smart00386 HAT HAT (Half-A-TPR 44.2 37 0.00081 16.0 4.3 12 112-123 4-15 (33)
459 PHA03100 ankyrin repeat protei 43.9 2.3E+02 0.0051 25.1 12.4 16 7-22 48-63 (480)
460 PF13934 ELYS: Nuclear pore co 43.2 1.6E+02 0.0035 23.1 14.2 105 133-248 79-185 (226)
461 PF15297 CKAP2_C: Cytoskeleton 43.1 2.1E+02 0.0045 24.3 10.5 45 292-336 143-187 (353)
462 KOG0687 26S proteasome regulat 42.9 2E+02 0.0044 24.1 16.5 135 91-229 66-210 (393)
463 PHA02798 ankyrin-like protein; 42.8 2.5E+02 0.0054 25.2 9.3 14 80-93 89-102 (489)
464 KOG0376 Serine-threonine phosp 42.3 82 0.0018 27.7 5.7 105 66-175 10-115 (476)
465 KOG2297 Predicted translation 41.6 2.1E+02 0.0045 23.9 14.4 184 13-220 157-341 (412)
466 KOG1308 Hsp70-interacting prot 41.5 21 0.00045 29.7 2.1 92 142-236 126-218 (377)
467 PF04090 RNA_pol_I_TF: RNA pol 41.1 1.7E+02 0.0036 22.6 6.8 60 24-86 43-102 (199)
468 KOG2582 COP9 signalosome, subu 40.9 2.3E+02 0.005 24.2 12.9 231 20-265 73-346 (422)
469 PF11838 ERAP1_C: ERAP1-like C 40.9 2.1E+02 0.0045 23.7 16.5 82 111-195 146-231 (324)
470 cd08323 CARD_APAF1 Caspase act 40.5 1E+02 0.0022 19.9 8.0 58 7-75 17-74 (86)
471 COG2178 Predicted RNA-binding 40.3 1.7E+02 0.0036 22.4 8.1 120 182-317 20-149 (204)
472 PF04762 IKI3: IKI3 family; I 39.4 2.1E+02 0.0046 28.3 8.6 117 36-156 792-927 (928)
473 PF14561 TPR_20: Tetratricopep 38.7 1.1E+02 0.0024 19.8 8.4 32 129-160 21-52 (90)
474 COG0790 FOG: TPR repeat, SEL1 38.3 2.2E+02 0.0048 23.2 23.8 190 72-274 53-276 (292)
475 COG4259 Uncharacterized protei 38.1 1.2E+02 0.0026 20.2 6.3 21 240-260 77-97 (121)
476 KOG0991 Replication factor C, 38.0 2.1E+02 0.0045 22.9 12.6 136 97-241 132-279 (333)
477 KOG2582 COP9 signalosome, subu 37.9 2.6E+02 0.0056 23.9 16.4 140 60-210 75-225 (422)
478 PRK08691 DNA polymerase III su 37.8 3.7E+02 0.0079 25.6 11.2 90 180-272 179-282 (709)
479 PF10475 DUF2450: Protein of u 37.6 2.3E+02 0.0051 23.3 10.9 116 65-189 103-221 (291)
480 smart00638 LPD_N Lipoprotein N 37.2 3.4E+02 0.0073 25.0 25.4 47 110-160 324-370 (574)
481 PHA02798 ankyrin-like protein; 37.1 3.1E+02 0.0067 24.6 10.1 13 116-128 126-138 (489)
482 KOG4642 Chaperone-dependent E3 37.0 2.2E+02 0.0047 22.8 11.4 80 73-156 23-104 (284)
483 COG2178 Predicted RNA-binding 36.9 1.9E+02 0.0042 22.1 8.8 17 212-228 133-149 (204)
484 KOG1308 Hsp70-interacting prot 36.7 34 0.00073 28.6 2.6 50 73-123 127-176 (377)
485 KOG1839 Uncharacterized protei 36.6 4.8E+02 0.01 26.7 11.6 130 128-257 971-1121(1236)
486 PF10155 DUF2363: Uncharacteri 36.4 1.5E+02 0.0033 20.8 11.4 41 117-157 85-125 (126)
487 cd08329 CARD_BIRC2_BIRC3 Caspa 35.5 1.3E+02 0.0028 19.8 7.3 15 38-52 53-67 (94)
488 TIGR03581 EF_0839 conserved hy 35.4 1.1E+02 0.0023 23.8 4.8 80 76-155 137-233 (236)
489 KOG4642 Chaperone-dependent E3 35.1 2.4E+02 0.0051 22.6 10.8 116 105-224 20-141 (284)
490 KOG2422 Uncharacterized conser 34.4 3.7E+02 0.0081 24.7 15.9 137 22-158 284-447 (665)
491 PF11123 DNA_Packaging_2: DNA 34.0 1.2E+02 0.0026 18.8 4.2 33 3-36 13-45 (82)
492 KOG0376 Serine-threonine phosp 33.4 1.5E+02 0.0032 26.3 5.8 103 138-245 12-115 (476)
493 cd01671 CARD Caspase activatio 33.2 1.2E+02 0.0026 18.7 6.2 30 37-73 42-71 (80)
494 cd08326 CARD_CASP9 Caspase act 33.2 1.3E+02 0.0029 19.2 7.5 33 214-250 44-76 (84)
495 PF04090 RNA_pol_I_TF: RNA pol 33.2 2.3E+02 0.0049 21.9 10.5 27 168-194 44-70 (199)
496 PHA02940 hypothetical protein; 33.1 2.5E+02 0.0055 22.4 9.9 31 145-175 184-214 (315)
497 PHA03100 ankyrin repeat protei 33.1 3.5E+02 0.0076 24.0 13.9 39 8-46 16-56 (480)
498 PF02631 RecX: RecX family; I 32.9 1.6E+02 0.0036 20.2 10.1 29 6-34 11-39 (121)
499 COG5116 RPN2 26S proteasome re 32.9 4E+02 0.0086 24.6 11.0 76 117-194 161-237 (926)
500 KOG3364 Membrane protein invol 32.8 1.9E+02 0.004 20.8 9.5 61 100-160 37-101 (149)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-59 Score=427.21 Aligned_cols=320 Identities=17% Similarity=0.253 Sum_probs=176.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHH
Q 044084 20 LDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYA 99 (343)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (343)
|+..+|+.++.+|++.|+++.|.++|++|.+.|+.|+ ..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD---~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD---CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4445555555555555555555555555555555544 4555555555555555555555555555555555555555
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh--cCCCCchhhHHHHHHHHhc
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKN--AELNISDCISCVIVNGFSK 177 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~ 177 (343)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .++.||..+|+.+|.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555543 3444555555555555555
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHH
Q 044084 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRL 257 (343)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (343)
.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh----------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044084 258 VAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK----------------YTTVISAYNMAREFDMCVKFYNEFRMNGGV 321 (343)
Q Consensus 258 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~----------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 321 (343)
+++|.+.|+.||..+|+.++.+|++.|++++|.+ |+.|+.+|++.|++++|.++|++|...|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 5555555555555555555555555555555544 555555555555555555555555555555
Q ss_pred ccHHHHHHHHHHHhccccccc
Q 044084 322 IDRAMAGIMVGVFSKLSQIEE 342 (343)
Q Consensus 322 p~~~~~~~l~~~~~~~g~~~~ 342 (343)
||..||++++.+|++.|++++
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADV 772 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHH
Confidence 555555555555555555443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.4e-59 Score=422.71 Aligned_cols=331 Identities=18% Similarity=0.293 Sum_probs=323.2
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+ ..+|+.+|.+|++.|++++|.+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd---vvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN---VHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHCcCHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999888 8999999999999999999999
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE--KGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|+.|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987 678999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHH
Q 044084 160 ELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYS 239 (343)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (343)
++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh----------------HHHHHHHHHhcC
Q 044084 240 SMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK----------------YTTVISAYNMAR 303 (343)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~----------------~~~l~~~~~~~g 303 (343)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+ |+.++.+|++.|
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 044084 304 EFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFS 335 (343)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 335 (343)
++++|.+++++|.+.|+.||..+|++++..|.
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999987643
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-53 Score=384.23 Aligned_cols=326 Identities=19% Similarity=0.269 Sum_probs=186.0
Q ss_pred hhhHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 3 SQSKLHYYEKMKSAG-IVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
+++|+++|++|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.|+ ..+|+.|+.+|++.|+++.|.+
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~---~~~~n~Li~~y~k~g~~~~A~~ 179 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD---QYMMNRVLLMHVKCGMLIDARR 179 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc---hHHHHHHHHHHhcCCCHHHHHH
Confidence 455555666555543 445555555555555555555555555555555555544 4455555555555555555555
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC----------------------------------
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGML---------------------------------- 127 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------------- 127 (343)
+|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 180 lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~ 255 (697)
T PLN03081 180 LFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255 (697)
T ss_pred HHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC
Confidence 555553 245555555555555555555555555555555444
Q ss_pred -CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 044084 128 -RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASI 206 (343)
Q Consensus 128 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 206 (343)
||..+|+.|+.+|++.|++++|.++|+.|.. +|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555566666666666655532 34455666666666666666666666666555555666666666
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccCh
Q 044084 207 INAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286 (343)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 286 (343)
+.+|++.|++++|.+++..|.+.|++||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|+.||.+|++.|+.
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCH
Confidence 666666666666666666666555556666666666666666666666666655542 4555566666666666665
Q ss_pred hHHHh----------------HHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCccHHHHHHHHHHHhcccccccC
Q 044084 287 RQLEK----------------YTTVISAYNMAREFDMCVKFYNEFRM-NGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 287 ~~a~~----------------~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
++|.+ |+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 55554 55555666666666666666666543 35556666666666666666655543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.1e-54 Score=387.35 Aligned_cols=324 Identities=19% Similarity=0.231 Sum_probs=297.1
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
+++.|.+++..|.+.|+.||..+|+.++..|++.|++++|.++|++|.+ ++ ..+|+.+|.+|++.|++++|++
T Consensus 138 ~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~---~~t~n~li~~~~~~g~~~~A~~ 210 (697)
T PLN03081 138 SIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RN---LASWGTIIGGLVDAGNYREAFA 210 (697)
T ss_pred CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CC---eeeHHHHHHHHHHCcCHHHHHH
Confidence 4567888999999999889999999999999999999999999988854 33 5779999999999999999999
Q ss_pred HHHHHHhcCCCCCh-----------------------------------HhHHHHHHHHhcccCHHHHHHHHHHHHHcCC
Q 044084 82 FFRDMKEKGILEDP-----------------------------------SVYASLICSFASIAEVKVAEELFKEAEEKGM 126 (343)
Q Consensus 82 ~~~~~~~~~~~~~~-----------------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (343)
+|++|.+.|+.|+. .+|+.|+.+|++.|++++|.++|+.|.+
T Consensus 211 lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 287 (697)
T PLN03081 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--- 287 (697)
T ss_pred HHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 99998776665554 4557778889999999999999998853
Q ss_pred CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 044084 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASI 206 (343)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 206 (343)
+|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.+
T Consensus 288 -~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 288 -KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred -CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccCh
Q 044084 207 INAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286 (343)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 286 (343)
+.+|++.|++++|.++|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~ 442 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH
Confidence 9999999999999999999864 789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHh-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 287 RQLEK-----------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 287 ~~a~~-----------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
++|.+ |+.++.+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.+
T Consensus 443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 99877 999999999999999999999876 6789999999999999999998753
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.5e-53 Score=388.05 Aligned_cols=331 Identities=18% Similarity=0.255 Sum_probs=279.4
Q ss_pred chhhHHHHHHHHHhCCCCCChhh-----------------------------------HHHHHHHHHhcCCHHHHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGC-----------------------------------YCQIMEAFYKIGDSEKVAALFL 46 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~-----------------------------------~~~l~~~~~~~~~~~~a~~~~~ 46 (343)
++++|+++|++|.+.|+.||..| |+.|+.+|++.|++++|.++|+
T Consensus 167 ~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 246 (857)
T PLN03077 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHh
Confidence 45667777777776666665555 4666677778888888888888
Q ss_pred HHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCC
Q 044084 47 ECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126 (343)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (343)
+|... + ..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus 247 ~m~~~----d---~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 247 RMPRR----D---CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred cCCCC----C---cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 87532 2 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 044084 127 LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASI 206 (343)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 206 (343)
.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 99999999999999999999999999999864 67789999999999999999999999999999999999999999
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC----------------------
Q 044084 207 INAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK---------------------- 264 (343)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------------- 264 (343)
+.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999888888888888888888888777777777766542
Q ss_pred --------CCCchHHHHHHHHH-----------------------------------HHhcccChhHHHh----------
Q 044084 265 --------GCEPNVWIYNSLMD-----------------------------------MHGRAKNLRQLEK---------- 291 (343)
Q Consensus 265 --------~~~p~~~~~~~l~~-----------------------------------~~~~~~~~~~a~~---------- 291 (343)
++.||..||+.++. +|++.|++++|..
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~ 555 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV 555 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChh
Confidence 35677776665554 4444455555543
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 292 -YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 292 -~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 8888899999999999999999999999999999999999999998888764
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-51 Score=377.00 Aligned_cols=328 Identities=14% Similarity=0.168 Sum_probs=270.2
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc-----------------------
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPS----------------------- 58 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------- 58 (343)
+++.|+++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|...|+.|+..
T Consensus 136 ~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 136 ELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred ChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 56889999999974 789999999999999999999999999999999887721
Q ss_pred ---------hHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCC
Q 044084 59 ---------STHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129 (343)
Q Consensus 59 ---------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (343)
+..+|+.||.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 12345666666667777777777777764 35667777777777777777777777777777777778
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 044084 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINA 209 (343)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 209 (343)
..+|+.++.++++.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~ 363 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISG 363 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHH
Confidence 778888888887777777788888777777777788888888888888888888888888775 4677788888888
Q ss_pred HHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHH
Q 044084 210 YCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQL 289 (343)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 289 (343)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..+++.|+++|++.|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888999999999999999988
Q ss_pred Hh------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccccccc
Q 044084 290 EK------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEE 342 (343)
Q Consensus 290 ~~------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 342 (343)
.+ |+.++.+|++.|+.++|+.+|++|.. ++.||..||++++.+|++.|.+++
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 87 99999999999999999999999986 588999998888877777666543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.8e-24 Score=203.61 Aligned_cols=327 Identities=13% Similarity=0.098 Sum_probs=239.0
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKF 82 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 82 (343)
.++|...|+++.+.+. .+...+..++..+.+.|++++|..+++.+.+.. |.+..+|..+...+...|++++|+..
T Consensus 549 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 549 EEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA----PDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred HHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455555555554432 344445555556666666666666666655433 12245666667777777777777777
Q ss_pred HHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC
Q 044084 83 FRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN 162 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (343)
|+++.+.. +.+...+..+...+.+.|++++|..+++++.+..+ .+..++..++..+...|++++|.++++.+.+..+
T Consensus 624 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 700 (899)
T TIGR02917 624 FKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP- 700 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 77666543 22445566666666677777777777777666543 2566677777777777777777777777766654
Q ss_pred CchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHH
Q 044084 163 ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242 (343)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (343)
.+...+..+...+...|++++|.+.|+++...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+.
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 455667777778888888888888888887763 555677778888888889999988888888765 56788888999
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHH
Q 044084 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDM 307 (343)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~ 307 (343)
..|...|++++|...|+++.+.. +++..++..+...+...|+ .+|.. +..+...+...|++++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998864 4577888899999999988 66666 5677888999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 308 CVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 308 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
|.++++++.+.+.. ++.++..+..++.+.|+.++|
T Consensus 856 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 856 ALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHH
Confidence 99999999998754 888999999999999998875
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1.1e-24 Score=185.42 Aligned_cols=310 Identities=10% Similarity=0.049 Sum_probs=206.1
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+..|.++.+.++ .+..++..+...+.+.|++++|..+++.+......+.......+..++..+...|++++|..
T Consensus 50 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred ChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677777777777643 34556777777777777777777777777654322211112456677777777777777777
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD----LEVFLKLVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++.
T Consensus 129 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 129 LFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 777776642 23556677777777777777777777777776553322 1234556666777777777777777776
Q ss_pred hcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhh
Q 044084 158 NAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA 237 (343)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (343)
+... .+...+..+...+...|++++|.++++++...+......++..+..+|...|++++|...++.+.+.. |+...
T Consensus 208 ~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~ 284 (389)
T PRK11788 208 AADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADL 284 (389)
T ss_pred hHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchH
Confidence 6543 33445666777777777777777777777765322223456677777777777777777777777653 45555
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 238 YSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRM 317 (343)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 317 (343)
+..++..+.+.|++++|..+++++.+. .|+..++..++..+... ...|+.++++.++++|.+
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~----------------~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAE----------------AEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhc----------------cCCccchhHHHHHHHHHH
Confidence 677777777777777777777777664 56666666555443321 114577889999999999
Q ss_pred CCCCccHHHHHHHHHHHhccccc
Q 044084 318 NGGVIDRAMAGIMVGVFSKLSQI 340 (343)
Q Consensus 318 ~~~~p~~~~~~~l~~~~~~~g~~ 340 (343)
.++.|++.. +|..||-.
T Consensus 347 ~~~~~~p~~------~c~~cg~~ 363 (389)
T PRK11788 347 EQLKRKPRY------RCRNCGFT 363 (389)
T ss_pred HHHhCCCCE------ECCCCCCC
Confidence 888888773 46666644
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=5e-23 Score=193.80 Aligned_cols=325 Identities=12% Similarity=0.103 Sum_probs=174.9
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+.+++.+.... +++..++..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+
T Consensus 446 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP----DFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456666666665542 23455566666666666666666666666554331 112344445555555555555555
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHh----------------------------------cccCHHHHHHHHHHHHHcCCC
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFA----------------------------------SIAEVKVAEELFKEAEEKGML 127 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~----------------------------------~~~~~~~a~~~~~~~~~~~~~ 127 (343)
.++++...+ +.+..++..+...+. ..|++++|..+++.+.+...
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 598 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP- 598 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-
Confidence 555554432 113334444444444 44444444444444443322
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 044084 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASII 207 (343)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 207 (343)
.+..+|..+...+...|++++|...|+++.+..+ .+...+..+..++...|++++|..+++++.+.. +.+..++..+.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 2444555555555555555555555555544332 233344455555555555555555555555432 22344555555
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChh
Q 044084 208 NAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLR 287 (343)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 287 (343)
..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...|+++... .|+..++..+..++.+.|+++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHH
Confidence 55555555555555555555543 334555556666666666666666666666654 334455555666666666666
Q ss_pred HHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccc
Q 044084 288 QLEK---------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQ 339 (343)
Q Consensus 288 ~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 339 (343)
+|.. +..+...|...|++++|.+.|+++.+... ++...++.+..++.+.|+
T Consensus 754 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc
Confidence 6654 55556666667777777777777766542 345556666666666555
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.6e-21 Score=164.86 Aligned_cols=284 Identities=12% Similarity=0.093 Sum_probs=228.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC---hHhHHH
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILED---PSVYAS 100 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 100 (343)
........+...|++++|...|.++.+.+ |.+..++..+...+...|++++|..+++.+...+..++ ...+..
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVD----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 33344556778899999999999998864 33467899999999999999999999999987542222 245778
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCch----hhHHHHHHHHh
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISD----CISCVIVNGFS 176 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 176 (343)
+...+.+.|+++.|..+|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 88999999999999999999988643 46889999999999999999999999999876643321 23556777888
Q ss_pred cCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHH
Q 044084 177 KRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMR 256 (343)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (343)
..|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|..
T Consensus 192 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998864 334567778889999999999999999999986533335678899999999999999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 044084 257 LVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSK 336 (343)
Q Consensus 257 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 336 (343)
.++++.+. .|+...+..+ +..+.+.|++++|..+++++.+. .|+..++..++..+..
T Consensus 271 ~l~~~~~~--~p~~~~~~~l-------------------a~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 271 FLRRALEE--YPGADLLLAL-------------------AQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHh--CCCchHHHHH-------------------HHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 99999876 4665544333 44566678888999999998875 5888888888877664
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=3e-19 Score=160.06 Aligned_cols=331 Identities=10% Similarity=0.008 Sum_probs=256.6
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+.+ |....+|..+..++...|++++|+.
T Consensus 142 ~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 142 DFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD----PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred CHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 678999999999875 4677889999999999999999999999987764 3346789999999999999999987
Q ss_pred HHHHHHhcCC----------------------------CC-ChHhHHHHHH-----------------------------
Q 044084 82 FFRDMKEKGI----------------------------LE-DPSVYASLIC----------------------------- 103 (343)
Q Consensus 82 ~~~~~~~~~~----------------------------~~-~~~~~~~l~~----------------------------- 103 (343)
.|......+. .| +...+..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (615)
T TIGR00990 216 DLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295 (615)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchH
Confidence 6654432110 00 0000100000
Q ss_pred -HH------hcccCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 044084 104 -SF------ASIAEVKVAEELFKEAEEKG-MLR-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG 174 (343)
Q Consensus 104 -~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (343)
.. ...+++++|...|+...+.+ ..| ....+..+...+...|++++|+..|++..+..+ .....|..+...
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~ 374 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHH
Confidence 00 11256888999999988764 223 466788889999999999999999999987654 345578888889
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHH
Q 044084 175 FSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDA 254 (343)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (343)
+...|++++|...|++..+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998774 3456788888999999999999999999999875 44677888899999999999999
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh----------------------HHHHHHHHHhcCCHHHHHHHH
Q 044084 255 MRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK----------------------YTTVISAYNMAREFDMCVKFY 312 (343)
Q Consensus 255 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~----------------------~~~l~~~~~~~g~~~~a~~~~ 312 (343)
...|++..+.. +.+...+..+...+...|++++|.. ++.....+...|++++|.+++
T Consensus 453 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 453 MATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999998752 3356788889999999999999976 111122233469999999999
Q ss_pred HHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 313 NEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 313 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
++...... .+...+..+..++.+.|++++|
T Consensus 532 ~kAl~l~p-~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 532 EKALIIDP-ECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHhcCC-CcHHHHHHHHHHHHHccCHHHH
Confidence 99887642 2344688899999999998875
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=6.1e-19 Score=157.82 Aligned_cols=307 Identities=9% Similarity=0.032 Sum_probs=241.2
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+.+++......+. +...+..++......|++++|...|+++.... |.+...+..+...+...|++++|+.
T Consensus 57 ~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~----P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN----VCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred CcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 467888888888887543 45566666677778999999999999998765 3335788888999999999999999
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL 161 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (343)
.+++..+.. +.+...+..+...+...|++++|...++.+....+. +...+..+ ..+...|++++|...++.+.+...
T Consensus 132 ~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 132 LAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999998763 224667888888999999999999999988776544 33444333 347888999999999999877654
Q ss_pred CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhH----HHHHHHHHHHcCCCcChhh
Q 044084 162 NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSK----AEKVFIEMQQKGFDKCVVA 237 (343)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~ 237 (343)
.++...+..+...+...|++++|...+++..... +.+...+..+...+...|++++ |...|+...+.. +.+...
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a 286 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRI 286 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHH
Confidence 3444455566778889999999999999988774 3456677788888999999885 789999988875 446778
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhc
Q 044084 238 YSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMA 302 (343)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~ 302 (343)
+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.. +..+..++...
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 8899999999999999999999988763 2245567778888999999998876 33345678889
Q ss_pred CCHHHHHHHHHHHHhCC
Q 044084 303 REFDMCVKFYNEFRMNG 319 (343)
Q Consensus 303 g~~~~a~~~~~~m~~~~ 319 (343)
|++++|+..|++..+..
T Consensus 366 G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 366 GKTSEAESVFEHYIQAR 382 (656)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987754
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=8e-19 Score=157.07 Aligned_cols=307 Identities=10% Similarity=0.025 Sum_probs=249.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHH
Q 044084 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICS 104 (343)
Q Consensus 25 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (343)
...++..+.+.|++++|..+++......... ...+..++.+....|++++|+..++++..... .+...+..+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~----~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~ 119 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG----RDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc----hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 4456677889999999999999998876544 35677777888889999999999999998742 256678888899
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (343)
+...|++++|...++++.+..+. +...+..+...+...|++++|...++.+....+.+ ...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHH
Confidence 99999999999999999986543 68889999999999999999999999887665533 3334333 347889999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHH----HHHHHHH
Q 044084 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRD----AMRLVAK 260 (343)
Q Consensus 185 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 260 (343)
...++.+.+....++...+..+..++.+.|++++|...++...+.. +.+...+..+...+...|++++ |...|++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999998876433444555566788899999999999999999875 4567788899999999999986 8999999
Q ss_pred HhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHH
Q 044084 261 MKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRA 325 (343)
Q Consensus 261 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 325 (343)
..+.. +.+...+..+...+...|++++|.. +..+..++.+.|++++|+..++++...+ |+..
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~ 352 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS 352 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence 98763 2356788899999999999999987 6778889999999999999999998864 4443
Q ss_pred H-HHHHHHHHhcccccccC
Q 044084 326 M-AGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 326 ~-~~~l~~~~~~~g~~~~a 343 (343)
. +..+..++...|+.++|
T Consensus 353 ~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HHHHHHHHHHHHCCCHHHH
Confidence 3 44457788899988764
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=2.3e-17 Score=157.34 Aligned_cols=334 Identities=10% Similarity=0.006 Sum_probs=234.3
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHH------------HHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYK------------ILCDS 69 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~li~~ 69 (343)
++++|+..|++..+..+ .+...+..+..++.+.|++++|...|++..+....... ...|. .....
T Consensus 284 ~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~--~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 284 QGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN--RDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc--hhHHHHHHHhhhHHHHHHHHHH
Confidence 57889999999888653 36788889999999999999999999998776543221 11121 22446
Q ss_pred hhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------
Q 044084 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKL------------- 136 (343)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------- 136 (343)
+.+.|++++|+..|++..+... .+...+..+...+...|++++|++.|+++.+.... +...+..+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHH
Confidence 6788999999999999988642 35566777888899999999999999998876432 33333322
Q ss_pred -----------------------------HHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHH
Q 044084 137 -----------------------------VLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKV 187 (343)
Q Consensus 137 -----------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (343)
...+...|++++|++.|++..+..+ -+...+..+...|...|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334567888888888888877664 3555677788888888999999988
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc--------------------------------------
Q 044084 188 YEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK-------------------------------------- 229 (343)
Q Consensus 188 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------------------------------- 229 (343)
++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 88887653 112222222222233334444443333321100
Q ss_pred -CCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------HH
Q 044084 230 -GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YT 293 (343)
Q Consensus 230 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~ 293 (343)
..+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|+.++|.. +.
T Consensus 597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~ 675 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675 (1157)
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence 124455667778888899999999999999998763 3357788889999999999999987 55
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC--c---cHHHHHHHHHHHhcccccccC
Q 044084 294 TVISAYNMAREFDMCVKFYNEFRMNGGV--I---DRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 294 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a 343 (343)
.+..++...|++++|.++++++...... | +...+..+...+.+.|+.++|
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 6677888999999999999998775332 2 224566667788888887654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=2.2e-18 Score=143.31 Aligned_cols=184 Identities=18% Similarity=0.210 Sum_probs=80.0
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR 179 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (343)
.|.-.+-..|+.-.|++.|++..+..+. =...|-.|...|...+.++.|+..|.+.....+ .....+..+...|..+|
T Consensus 223 nLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG 300 (966)
T KOG4626|consen 223 NLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQG 300 (966)
T ss_pred hcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccc
Confidence 3333334444444445544444443211 134444555555555555555555554443322 22233444444444445
Q ss_pred cHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHH
Q 044084 180 AYWAAVKVYEQLISQGCIPG-QVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLV 258 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (343)
..+.|++.|++..+. .|+ ...|+.|..++-..|++.+|.+.+....... +......+.|...|...|.++.|..+|
T Consensus 301 ~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 301 LLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHH
Confidence 555555555544443 222 2344445555444455555555444444432 222334444444444444444444444
Q ss_pred HHHhhCCCCchH-HHHHHHHHHHhcccChhHHH
Q 044084 259 AKMKPKGCEPNV-WIYNSLMDMHGRAKNLRQLE 290 (343)
Q Consensus 259 ~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~ 290 (343)
....+- .|.- ...+.|...|.+.|++++|.
T Consensus 378 ~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 378 LKALEV--FPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HHHHhh--ChhhhhhhhhHHHHHHhcccHHHHH
Confidence 444432 2221 23344444444444444443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=3.9e-16 Score=140.14 Aligned_cols=313 Identities=10% Similarity=-0.024 Sum_probs=235.5
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------------------------
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDL-------------------------- 55 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------- 55 (343)
++++|+..++..++.++ .+...|..+..+|...|++++|..-|......+...
T Consensus 175 ~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~ 253 (615)
T TIGR00990 175 DWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILET 253 (615)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57889999999998753 467789999999999999999987664432211000
Q ss_pred CCchHHHHHHH---------------------------------HHH---hhccCcHHHHHHHHHHHHhcC-CCC-ChHh
Q 044084 56 TPSSTHMYKIL---------------------------------CDS---LGKSGRAFEILKFFRDMKEKG-ILE-DPSV 97 (343)
Q Consensus 56 ~~~~~~~~~~l---------------------------------i~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~ 97 (343)
.|.....+..+ ... ....+++++|.+.|+.....+ ..| ....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a 333 (615)
T TIGR00990 254 KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA 333 (615)
T ss_pred CCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHH
Confidence 00000000000 000 012257889999999998764 233 3456
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (343)
+..+...+...|++++|...+++..+..+. ....|..+...+...|++++|...|++..+.++ .+..+|..+...+..
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 777888888999999999999999986532 577888999999999999999999999987764 456788899999999
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHH
Q 044084 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRL 257 (343)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (343)
.|++++|...|++..+.. +.+...+..+..++.+.|++++|...|+...+.. +.+...++.+...+...|++++|...
T Consensus 412 ~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred cCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999998874 3456677788888999999999999999998864 55678899999999999999999999
Q ss_pred HHHHhhCCCCchH-----H-HHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 258 VAKMKPKGCEPNV-----W-IYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 258 ~~~m~~~~~~p~~-----~-~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
|++..+.....+. . .++.....+...|++++|.. +..+...+.+.|++++|++.|++..
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9998875221111 1 11222223334578887776 7788999999999999999999987
Q ss_pred hCC
Q 044084 317 MNG 319 (343)
Q Consensus 317 ~~~ 319 (343)
+..
T Consensus 570 ~l~ 572 (615)
T TIGR00990 570 ELA 572 (615)
T ss_pred HHh
Confidence 653
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=4.3e-16 Score=148.76 Aligned_cols=227 Identities=11% Similarity=0.038 Sum_probs=157.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCC-ChHhHH------
Q 044084 27 QIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILE-DPSVYA------ 99 (343)
Q Consensus 27 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------ 99 (343)
.....+...|++++|...|++..+.. |.+..++..+...+.+.|++++|+..|++..+..... ....+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~----P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN----PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 34567788999999999999998765 3336789999999999999999999999998764322 111121
Q ss_pred ------HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHH
Q 044084 100 ------SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVN 173 (343)
Q Consensus 100 ------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (343)
.....+.+.|++++|...|+++.+..+. +...+..+...+...|++++|++.|++..+..+ .+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 1234567889999999999999997643 677888899999999999999999999987654 23333333322
Q ss_pred ------------------------------------------HHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 044084 174 ------------------------------------------GFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYC 211 (343)
Q Consensus 174 ------------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 211 (343)
.+...|++++|.+.|++..+.. +-+...+..+...|.
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3345677777777777776653 223445556667777
Q ss_pred ccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHH
Q 044084 212 RIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM 261 (343)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 261 (343)
+.|++++|...++.+.+.. +.+...+..+...+...++.++|...++.+
T Consensus 507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 7777777777777776643 223333433334444555555555555544
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=9e-18 Score=139.77 Aligned_cols=309 Identities=14% Similarity=0.124 Sum_probs=250.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHh-HH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSV-YA 99 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~ 99 (343)
-..+|..+...+-..|++++|+.+++.+.+.. |.....|..+..++...|+.+.|...|.+.++. .|+... .+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~----p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s 188 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK----PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARS 188 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC----chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhc
Confidence 45688889999999999999999999887755 444688999999999999999999999888775 454432 33
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR 179 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (343)
.+....-..|..++|...+.+.++..+. =...|+.|...+...|+...|++.|++....++ .-...|-.|...|...+
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEAR 266 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHh
Confidence 3445555678889999998888876432 356788899999999999999999999887654 22346888888888899
Q ss_pred cHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHH
Q 044084 180 AYWAAVKVYEQLISQGCIPG-QVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLV 258 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (343)
.+++|...|.+.... .|+ ...+..+...|-.+|.++-|+..+++..+.. +.=...|+.|..++-..|+..+|.+.|
T Consensus 267 ~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred cchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHH
Confidence 999999998887776 454 5677788888899999999999999998864 223678999999999999999999999
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 044084 259 AKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVID 323 (343)
Q Consensus 259 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 323 (343)
++..... .--....+.|...|...|.+++|.. ++.|...|-+.|++++|+..|++.++ ++|+
T Consensus 344 nkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 344 NKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 9998762 2245678889999999999999887 88999999999999999999999887 6777
Q ss_pred HH-HHHHHHHHHhcccccccC
Q 044084 324 RA-MAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 324 ~~-~~~~l~~~~~~~g~~~~a 343 (343)
.. .|+.+...|...|+++.|
T Consensus 421 fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHH
Confidence 64 488888888888887653
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.2e-15 Score=139.67 Aligned_cols=331 Identities=12% Similarity=0.075 Sum_probs=239.1
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
+.++|++++.+..... +.+...+..+...+.+.|++++|..+|++..+.. |.+...+..++..+...|++++|+.
T Consensus 30 ~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 30 QDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE----PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 5678899998888633 3455578899999999999999999999987764 3334677788889999999999999
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHH-------
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVE------- 154 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------- 154 (343)
.+++..+.. +.+.. +..+..++...|+.++|...++++.+..+. +...+..+...+...+..++|++.++
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~ 181 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPA 181 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHH
Confidence 999998863 23455 778888889999999999999999987654 56666666666666666555544443
Q ss_pred ---------------------------------------HHHhc-CCCCchh-hHH----HHHHHHhcCCcHHHHHHHHH
Q 044084 155 ---------------------------------------SMKNA-ELNISDC-ISC----VIVNGFSKRRAYWAAVKVYE 189 (343)
Q Consensus 155 ---------------------------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~ 189 (343)
.+.+. ...|+.. .+. ..+..+...|++++|...|+
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33322 1112111 111 11234567789999999999
Q ss_pred HHHHcCCC-CCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc---ChhhHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 044084 190 QLISQGCI-PGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK---CVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 190 ~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 265 (343)
.+.+.+.. |+. ....+..+|...|++++|+.+|+.+.+..... .......+..++...|++++|..+++.+.+..
T Consensus 262 ~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 262 RLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 99887532 322 22335678899999999999999987653111 12456667778889999999999999988652
Q ss_pred C-----------Cch---HHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 266 C-----------EPN---VWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 266 ~-----------~p~---~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
. .|+ ...+..+...+...|+.++|+. +..+...+...|++++|++.+++..
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1 123 2344567778888999999887 7788888899999999999999988
Q ss_pred hCCCCcc-HHHHHHHHHHHhcccccccC
Q 044084 317 MNGGVID-RAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 317 ~~~~~p~-~~~~~~l~~~~~~~g~~~~a 343 (343)
... |+ ...+......+.+.|++++|
T Consensus 421 ~l~--Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 421 VLE--PRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred hhC--CCChHHHHHHHHHHHHhCCHHHH
Confidence 854 54 45566677788888887654
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2e-15 Score=120.73 Aligned_cols=294 Identities=13% Similarity=0.112 Sum_probs=226.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhH
Q 044084 19 VLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVY 98 (343)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (343)
+.+..+|.++|.+.++....++|.+++++......... ..+||.+|.+-.-... .+++.+|.+..+.||..|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~---~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVY---REAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheee---HHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhH
Confidence 45778999999999999999999999999988877777 8899999876543332 7789999999999999999
Q ss_pred HHHHHHHhcccCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhH-HHHHHHHHHh----cCCCC----ch
Q 044084 99 ASLICSFASIAEVKVA----EELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEK-TLEVVESMKN----AELNI----SD 165 (343)
Q Consensus 99 ~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~ 165 (343)
|+++++..+.|+++.+ .+++.+|.+.|+.|+..+|..+|..+++.++..+ |..++.++.. ..++| +.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 9999999999987654 5678889999999999999999999999888754 4555555543 22222 33
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHcC----CCCCH---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhH
Q 044084 166 CISCVIVNGFSKRRAYWAAVKVYEQLISQG----CIPGQ---VTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAY 238 (343)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (343)
..|..-+..|.+..+.+-|.++..-+.... +.|+. .-|..+..+.|.....+.....++.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 446667788888888888888877665431 33432 23556777788888899999999999888777899999
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhccc-Ch--------hHHHh------------------
Q 044084 239 SSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK-NL--------RQLEK------------------ 291 (343)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~--------~~a~~------------------ 291 (343)
..++++....|+++-..++|..++..|...+...-.-++..+++.. .. ..+..
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999988875555554444444444433 11 00000
Q ss_pred --------HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044084 292 --------YTTVISAYNMAREFDMCVKFYNEFRMNG 319 (343)
Q Consensus 292 --------~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 319 (343)
.+...-.+.+.|+.++|.+++..+.+.+
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 6777777889999999999999986554
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.4e-14 Score=130.84 Aligned_cols=306 Identities=11% Similarity=0.049 Sum_probs=183.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (343)
...+...|++++|.++|+++.+... .+...+..++..+...++.++|++.++++... .|+...+..++..+...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP----~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDP----TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 3345555666666666665554432 12344445555555556666666665555543 23333333332333233
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHH----------------------------------
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVE---------------------------------- 154 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------- 154 (343)
++..+|++.++++.+..+. +...+..+...+.+.|-...|.++..
T Consensus 183 ~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 4444466666666655432 44555555555544443333333222
Q ss_pred --------------HHHhc-CCCCch-hhH----HHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 044084 155 --------------SMKNA-ELNISD-CIS----CVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIG 214 (343)
Q Consensus 155 --------------~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 214 (343)
.+... +..|.. ..| --.+-++...|+..++++.|+.+...+.+....+-..+..+|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 11110 000111 111 1234456667788888888888888776555667788888999999
Q ss_pred ChhHHHHHHHHHHHcC-----CCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCC-------------CchHHH-HHH
Q 044084 215 LYSKAEKVFIEMQQKG-----FDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGC-------------EPNVWI-YNS 275 (343)
Q Consensus 215 ~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-------------~p~~~~-~~~ 275 (343)
++++|+.++..+.... .+++......|.-+|...+++++|..+++++.+.-. .||-.. ...
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 9999999999886643 123444457788888999999999999999887311 122222 344
Q ss_pred HHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHhcccc
Q 044084 276 LMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVID-RAMAGIMVGVFSKLSQ 339 (343)
Q Consensus 276 l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 339 (343)
++..+...|++.+|++ ...+...+...|.+.+|.+.++..... .|+ ..+......++.+.|+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhh
Confidence 5667788888888887 777788888899999999999777665 344 4456667777777777
Q ss_pred cccC
Q 044084 340 IEEL 343 (343)
Q Consensus 340 ~~~a 343 (343)
+++|
T Consensus 500 ~~~A 503 (822)
T PRK14574 500 WHQM 503 (822)
T ss_pred HHHH
Confidence 7653
No 22
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=4.9e-15 Score=114.21 Aligned_cols=295 Identities=11% Similarity=0.077 Sum_probs=206.8
Q ss_pred CchhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHH
Q 044084 1 TNSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEIL 80 (343)
Q Consensus 1 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 80 (343)
+++++|.++|-+|.+.+. -+..+.-+|.+.|.+.|..++|+++.+.+.++.--+...-..+...|.+-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 467888898888888543 3556677788888888999999998887765432222111344556777888888899999
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 044084 81 KFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD----LEVFLKLVLMYIEEGMVEKTLEVVESM 156 (343)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (343)
++|..+.+.+. .-......|+..|-...+|++|.++-+++.+.+..+. ...|.-|...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99888877542 2345677788888888889999888888888765543 344666777777778888888888888
Q ss_pred HhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChh
Q 044084 157 KNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVV 236 (343)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (343)
.+.+. -++..--.+.+.....|+++.|.+.++...+.+..--..+...+..+|...|+.++....+..+.+.. +...
T Consensus 207 lqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 87765 34444445667788888999999999888888644445677788888888999988888888888764 3333
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 237 AYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
.-..+.+......-.+.|...+.+-... +|+...+..+++...... ..|...+-+.++++|.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~da----------------eeg~~k~sL~~lr~mv 345 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADA----------------EEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccc----------------cccchhhhHHHHHHHH
Confidence 3344444444444456666666555554 788888888887654322 2345566666777775
Q ss_pred hC
Q 044084 317 MN 318 (343)
Q Consensus 317 ~~ 318 (343)
..
T Consensus 346 ge 347 (389)
T COG2956 346 GE 347 (389)
T ss_pred HH
Confidence 43
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=4.8e-14 Score=129.16 Aligned_cols=314 Identities=9% Similarity=-0.010 Sum_probs=227.4
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|..++++..+..+ .+...+..+...+.+.|++++|...++++.+.. |.+.. +..+..++...|++++|+.
T Consensus 64 ~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~----P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 64 QWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA----PDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 56789999999888643 456677888889999999999999999988764 33345 8888889999999999999
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHH----------------------------------------------HH
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKV----------------------------------------------AE 115 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------------------a~ 115 (343)
.++++.+.... +...+..+..++...+..+. |.
T Consensus 138 ~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 138 AMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 99999886432 34444455555555455443 33
Q ss_pred HHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCcHhHHHHHHHHHHhcCCC-CchhhHHHHHHHHhcCCcHHHHHHHH
Q 044084 116 ELFKEAEEK-GMLRDLE-VF----LKLVLMYIEEGMVEKTLEVVESMKNAELN-ISDCISCVIVNGFSKRRAYWAAVKVY 188 (343)
Q Consensus 116 ~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (343)
..++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. .-..+...|...|++++|...|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHH
Confidence 344444432 1122211 11 11133456779999999999999887642 322 2233577899999999999999
Q ss_pred HHHHHcCCCC---CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-----------CcC---hhhHHHHHHHHHccCCh
Q 044084 189 EQLISQGCIP---GQVTYASIINAYCRIGLYSKAEKVFIEMQQKGF-----------DKC---VVAYSSMVAMYGKTGRI 251 (343)
Q Consensus 189 ~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~ 251 (343)
+++....... .......+..++...|++++|..+++.+.+... .|+ ...+..+...+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 9988653111 123456667788999999999999999987631 122 23456677888999999
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 252 RDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 252 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
++|+++++++.... +.+...+..+...+...|++++|+. +...+..+...|++++|..++++++
T Consensus 376 ~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 376 PQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998762 4467788889999999999999988 4556667889999999999999999
Q ss_pred hCCCCccHHH
Q 044084 317 MNGGVIDRAM 326 (343)
Q Consensus 317 ~~~~~p~~~~ 326 (343)
+. .|+...
T Consensus 455 ~~--~Pd~~~ 462 (765)
T PRK10049 455 AR--EPQDPG 462 (765)
T ss_pred Hh--CCCCHH
Confidence 85 344443
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=2.7e-17 Score=133.22 Aligned_cols=256 Identities=15% Similarity=0.186 Sum_probs=107.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHh
Q 044084 27 QIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFA 106 (343)
Q Consensus 27 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (343)
.+...+.+.|++++|+++++.......+ |.+...|..+.......++++.|.+.++++...+.. ++..+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~--~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAP--PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccc-ccccccccccc-c
Confidence 5577888899999999998654433311 222456777777777888899999999998876533 55567777766 6
Q ss_pred cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC-CCCchhhHHHHHHHHhcCCcHHHHH
Q 044084 107 SIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE-LNISDCISCVIVNGFSKRRAYWAAV 185 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (343)
..+++++|..++....+.. +++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8888999988887766543 466677788888889999999999998876533 3356667888888888999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 044084 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 186 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 265 (343)
+.+++..+.. +-|......++..+...|+.+++..++....+.. +.|+..+..+..+|...|+.++|..+|++.....
T Consensus 167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999988873 2246677788888888899999888888887764 5667778888999999999999999999988752
Q ss_pred CCchHHHHHHHHHHHhcccChhHHHh
Q 044084 266 CEPNVWIYNSLMDMHGRAKNLRQLEK 291 (343)
Q Consensus 266 ~~p~~~~~~~l~~~~~~~~~~~~a~~ 291 (343)
+.|+.+...+.+++...|+.++|..
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------
T ss_pred -ccccccccccccccccccccccccc
Confidence 3377778888889999999988876
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=3.1e-14 Score=114.04 Aligned_cols=285 Identities=13% Similarity=0.128 Sum_probs=215.4
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCCHHHH-HHHHHHHHhCCCCC----------------CCchHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFY--KIGDSEKV-AALFLECESRKLDL----------------TPSSTHMY 63 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~~~~~----------------~~~~~~~~ 63 (343)
.+.+.-+++.|.+.|++.+...-..|+...+ ...++.-| ++.|-.|...+-.. .|.+..++
T Consensus 131 vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~ 210 (625)
T KOG4422|consen 131 VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETV 210 (625)
T ss_pred cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhH
Confidence 4567778999999998888877776665433 32222211 22232332222111 13335889
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044084 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEE 143 (343)
Q Consensus 64 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (343)
.++|.++++....+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|......||..|+|+++.+..+.
T Consensus 211 s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 211 SIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHh
Confidence 99999999999999999999999988888899999999976543333 78899999999999999999999999999
Q ss_pred CcHhH----HHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHH-HHHHHHHHHHc----CCCC----CHhhHHHHHHHH
Q 044084 144 GMVEK----TLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA-AVKVYEQLISQ----GCIP----GQVTYASIINAY 210 (343)
Q Consensus 144 ~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~p----~~~~~~~ll~~~ 210 (343)
|+++. |.+++.+|++.|+.|+..+|..+|..+++.+++.+ +..++.++... .++| |...|...+..|
T Consensus 287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 98765 56778889999999999999999999999887744 55555555543 2332 445677788888
Q ss_pred HccCChhHHHHHHHHHHHc----CCCcC---hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcc
Q 044084 211 CRIGLYSKAEKVFIEMQQK----GFDKC---VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRA 283 (343)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 283 (343)
.+..+.+-|.++..-+... -+.|+ ..-|..+....++....+....+|+.|+-.-+-|+..+...++++....
T Consensus 367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~ 446 (625)
T KOG4422|consen 367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA 446 (625)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence 8999999998887766542 12233 2346677888888889999999999999888899999999999999988
Q ss_pred cChhHHHh
Q 044084 284 KNLRQLEK 291 (343)
Q Consensus 284 ~~~~~a~~ 291 (343)
|.++-..+
T Consensus 447 ~~~e~ipR 454 (625)
T KOG4422|consen 447 NRLEVIPR 454 (625)
T ss_pred CcchhHHH
Confidence 88876655
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=1e-16 Score=129.87 Aligned_cols=253 Identities=16% Similarity=0.165 Sum_probs=115.3
Q ss_pred CchhhHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHH
Q 044084 1 TNSQSKLHYYEKMKSAG-IVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEI 79 (343)
Q Consensus 1 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 79 (343)
.++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+.. +...+..++.. ...+++++|
T Consensus 22 ~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~----~~~~~~~l~~l-~~~~~~~~A 96 (280)
T PF13429_consen 22 GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA----NPQDYERLIQL-LQDGDPEEA 96 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccc-ccccccccc
Confidence 36789999997665544 3345566677777888899999999999999776533 24567777777 789999999
Q ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 044084 80 LKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKG-MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKN 158 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (343)
.+++....+.. +++..+..++..+.+.++++.+..+++.+.... .+.+...|..+...+.+.|+.++|++.+++..+
T Consensus 97 ~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 97 LKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998776653 466677888888999999999999999987543 345788899999999999999999999999998
Q ss_pred cCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhH
Q 044084 159 AELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAY 238 (343)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (343)
..+ .+......++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|...|+...+.. +.|+...
T Consensus 175 ~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~ 251 (280)
T PF13429_consen 175 LDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWL 251 (280)
T ss_dssp H-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHH
T ss_pred cCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccc
Confidence 875 467778889999999999999999999888774 4556677888999999999999999999998875 5688889
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhh
Q 044084 239 SSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
..+..++...|+.++|.++..+...
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999887654
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1.2e-13 Score=117.09 Aligned_cols=254 Identities=7% Similarity=0.006 Sum_probs=118.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHH
Q 044084 33 YKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVK 112 (343)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (343)
.+.|+++.|.+.+.++.+...... ..........+...|+++.|...++++.+.... ++.....+...|.+.|+++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHH
Confidence 455555555555555543321111 011112234445555555555555555544311 3444445555555555555
Q ss_pred HHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHH
Q 044084 113 VAEELFKEAEEKGMLRDL-------EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAV 185 (343)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (343)
.+..++..+.+.+..++. .+|..++.......+.+...++++.+...- +.+......+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHH
Confidence 555555555554433111 112222222222333334444444433221 123334445555555555555555
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 044084 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 186 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 265 (343)
+++++..+. +|+... .++.+....++.+++.+..+...+.. +-|...+..+...+.+.+++++|.+.|+...+.
T Consensus 284 ~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~- 357 (398)
T PRK10747 284 QIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ- 357 (398)
T ss_pred HHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 555555543 233311 11222233455555555555555443 334444555555555555555555555555543
Q ss_pred CCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 266 CEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRM 317 (343)
Q Consensus 266 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 317 (343)
.|+..++.. +...+.+.|+.++|.+++++-..
T Consensus 358 -~P~~~~~~~-------------------La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 -RPDAYDYAW-------------------LADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHH-------------------HHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555444 44555566666777777776543
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=9.5e-14 Score=112.20 Aligned_cols=304 Identities=13% Similarity=0.108 Sum_probs=236.6
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHH-HHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAF-EILK 81 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~ 81 (343)
.+++++-.+.+.+.|.+-+...-+....+.....++++|+.+|+++.+.. +-.-.+..+|+.++-.--.+.+.. -|..
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 45667777777888886666666666677778889999999999998874 333444678887765543322221 2222
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL 161 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (343)
+++ - -+--+.|...+.+-|+-.++.+.|...|++..+.++. ....|+.+..-|....+...|.+.++...+.++
T Consensus 322 v~~----i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 322 VSN----I-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHH----h-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 221 1 1234567888888888889999999999999997754 678899999999999999999999999998877
Q ss_pred CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHH
Q 044084 162 NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241 (343)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (343)
.|-..|-.+.++|.-.+.+.-|+-.|++..... +-|...|.+|..+|.+.++.++|++-|......| ..+...+..|
T Consensus 396 -~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~L 472 (559)
T KOG1155|consen 396 -RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRL 472 (559)
T ss_pred -hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHH
Confidence 688889999999999999999999999998874 5678899999999999999999999999999887 4466889999
Q ss_pred HHHHHccCChHHHHHHHHHHhhC----CC-Cch-HHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044084 242 VAMYGKTGRIRDAMRLVAKMKPK----GC-EPN-VWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEF 315 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m 315 (343)
.+.|-+.++..+|...|.+-++. |. .|. ...-.-|..-+.+.+++++|..|......+ ....++|..++++.
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlRei 550 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLREI 550 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHHH
Confidence 99999999999999988877652 33 331 222233555678899999998877766655 56778899999988
Q ss_pred HhC
Q 044084 316 RMN 318 (343)
Q Consensus 316 ~~~ 318 (343)
++.
T Consensus 551 r~~ 553 (559)
T KOG1155|consen 551 RKI 553 (559)
T ss_pred HHh
Confidence 765
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1.8e-13 Score=116.67 Aligned_cols=278 Identities=9% Similarity=0.005 Sum_probs=182.6
Q ss_pred chhhHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSG-CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEIL 80 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 80 (343)
+++.|.+.+.+..+.. |+.. .+-....+..+.|+++.|.+.+.+..+....+. ....-.....+...|+++.|.
T Consensus 99 ~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~---l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 99 DYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN---ILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc---hHHHHHHHHHHHHCCCHHHHH
Confidence 6778888887776653 4433 344456677888999999999988766543222 123334577778889999999
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH---HHhcCcHhHHHHHHHHH
Q 044084 81 KFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFL-KLVLM---YIEEGMVEKTLEVVESM 156 (343)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~a~~~~~~~ 156 (343)
..++.+.+..+. +...+..+...+...|+++.+.+.+..+.+.+.. +...+. .-... ....+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999998887532 5567778888889999999999999998888654 333332 11111 12223333333444444
Q ss_pred HhcCC---CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhH---HHHHHHHHccCChhHHHHHHHHHHHcC
Q 044084 157 KNAEL---NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTY---ASIINAYCRIGLYSKAEKVFIEMQQKG 230 (343)
Q Consensus 157 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (343)
.+..+ +.+...+..+...+...|++++|.+++++..+. .||.... ....-.....++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 43322 125667788888889999999999999998886 3444321 111122234577788888888777653
Q ss_pred CCcCh--hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHH
Q 044084 231 FDKCV--VAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQL 289 (343)
Q Consensus 231 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 289 (343)
+-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3344 566788888899999999999998544433478887776666665555544433
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=6.9e-13 Score=120.04 Aligned_cols=310 Identities=10% Similarity=0.031 Sum_probs=233.0
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+++|+++.+..+ -+...+..++..+.+.++.++|++.++.+...... ...+..++..+...++..+|++
T Consensus 117 dyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-----~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 117 RWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-----VQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred CHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-----hHHHHHHHHHHHhcchHHHHHH
Confidence 67899999999999865 35677778889999999999999999998765432 2344444455545666767999
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHH------------------------------------------
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFK------------------------------------------ 119 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------------------------------------ 119 (343)
.++++.+.. +-+...+..+..++.+.|-...|.++..
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 999999974 2256666777777777765544443332
Q ss_pred ------HHHHc-CCCCCH-HH----HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHH
Q 044084 120 ------EAEEK-GMLRDL-EV----FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKV 187 (343)
Q Consensus 120 ------~~~~~-~~~~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (343)
.+... +..|.. .. .--.+-++...+++.++++.|+.+...+.+....+-..+.++|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 11110 111221 11 1223456778899999999999999888665666788999999999999999999
Q ss_pred HHHHHHcC-----CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-----------CcCh---hhHHHHHHHHHcc
Q 044084 188 YEQLISQG-----CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGF-----------DKCV---VAYSSMVAMYGKT 248 (343)
Q Consensus 188 ~~~~~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~ 248 (343)
|+.+.... .+++......|.-+|...+++++|..+++.+.+... .||. ..+..++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 99997653 123444457889999999999999999999998421 1221 2345567888999
Q ss_pred CChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHH
Q 044084 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFYN 313 (343)
Q Consensus 249 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~ 313 (343)
|++.+|++.++++.... +-|......+.+.+...|.++.|+. ....+.++...|++++|..+.+
T Consensus 430 gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999998763 4488889999999999999999988 5666777888899999999999
Q ss_pred HHHhCC
Q 044084 314 EFRMNG 319 (343)
Q Consensus 314 ~m~~~~ 319 (343)
...+..
T Consensus 509 ~l~~~~ 514 (822)
T PRK14574 509 DVISRS 514 (822)
T ss_pred HHHhhC
Confidence 887753
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=1e-13 Score=117.47 Aligned_cols=274 Identities=10% Similarity=0.052 Sum_probs=200.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHH--HHHHHHhcccCHH
Q 044084 35 IGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYA--SLICSFASIAEVK 112 (343)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 112 (343)
.|++++|.+.+....+....| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p----~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP----VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 489999998887765543222 234544456668899999999999998775 44543332 3356788889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCch-------hhHHHHHHHHhcCCcHHHHH
Q 044084 113 VAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISD-------CISCVIVNGFSKRRAYWAAV 185 (343)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 185 (343)
.|...++++.+..+. ++.....+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999887754 7888899999999999999999999999887764322 12333344444455667777
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 044084 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 186 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 265 (343)
++++.+.+. .+.+......+..++...|+.++|..++++..+. +++... .++.+....++.+++.+..+...+.
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~- 323 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ- 323 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-
Confidence 777776554 2456777888889999999999999999988874 445432 2334444568899999999888876
Q ss_pred CCchH-HHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 266 CEPNV-WIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 266 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
.|+. .....+ ...+.+.|++++|.+.|+...+. .|+..++..+..++.+.|+.++|
T Consensus 324 -~P~~~~l~l~l-------------------grl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 324 -HGDTPLLWSTL-------------------GQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred -CCCCHHHHHHH-------------------HHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 4444 333333 44566778888999999999884 68999988999999999998764
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=5.2e-13 Score=123.25 Aligned_cols=220 Identities=8% Similarity=-0.020 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (343)
..|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...++++... .|+...+..+...+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 344444444443 4444444444444332 233222222222223445555555555444332 12222333444444
Q ss_pred HhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHH
Q 044084 141 IEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAE 220 (343)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 220 (343)
.+.|+.++|...+++..+.++ .+...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555554444332 11111222222222335555555555554443 233444444444455555555555
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHH
Q 044084 221 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLE 290 (343)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 290 (343)
..++...+.. |.+...++.+...+...|++++|...+++..+.. +-+...+..+..++...|++++|+
T Consensus 630 ~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 630 SDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5555544443 2233444444444445555555555555444431 112333444444444444444443
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=1.4e-13 Score=117.30 Aligned_cols=282 Identities=11% Similarity=-0.001 Sum_probs=188.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHH
Q 044084 33 YKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVK 112 (343)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (343)
...|+++.|.+.+....+....| ...+-....+..+.|+++.|.+.+.+..+....+.....-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~----~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEP----VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 45689999999998876654322 24555566778888999999999999876532222223333567788899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHH-HHHHHH---hcCCcHHHHHHHH
Q 044084 113 VAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISC-VIVNGF---SKRRAYWAAVKVY 188 (343)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~ 188 (343)
.|...++.+.+..+. ++.+...+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..+...+.+
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999998754 7788889999999999999999999999988763 333231 111111 2222333333344
Q ss_pred HHHHHcC---CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhh---HHHHHHHHHccCChHHHHHHHHHHh
Q 044084 189 EQLISQG---CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA---YSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 189 ~~~~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 4444431 11367778888889999999999999999998865 33321 1111222234567788888888777
Q ss_pred hCCCCchHH---HHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccc
Q 044084 263 PKGCEPNVW---IYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQ 339 (343)
Q Consensus 263 ~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 339 (343)
+. .|+.. ...++ ...+.+.|++++|.+.|+........|+...+..+..++.+.|+
T Consensus 327 k~--~p~~~~~~ll~sL-------------------g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~ 385 (409)
T TIGR00540 327 KN--VDDKPKCCINRAL-------------------GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGD 385 (409)
T ss_pred Hh--CCCChhHHHHHHH-------------------HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCC
Confidence 65 44443 32333 34455677778888888854444456788777788888888888
Q ss_pred cccC
Q 044084 340 IEEL 343 (343)
Q Consensus 340 ~~~a 343 (343)
.++|
T Consensus 386 ~~~A 389 (409)
T TIGR00540 386 KAEA 389 (409)
T ss_pred HHHH
Confidence 7654
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.6e-14 Score=121.57 Aligned_cols=276 Identities=13% Similarity=0.092 Sum_probs=205.4
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKF 82 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 82 (343)
.++|+..|..+.++ +.-+......+..+|...+++++|.++|+.+.+...-- -...++|.+.+..+-+.- ++..
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r-v~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR-VKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhHHHHHHHHHHhhH----HHHH
Confidence 57899999995554 44455777889999999999999999999997764322 223577887776543321 2222
Q ss_pred H-HHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC
Q 044084 83 F-RDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL 161 (343)
Q Consensus 83 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (343)
+ +.+.... +-.+.+|.++.++|.-.++.+.|++.|++..+.... ...+|+.+..-+.....+|.|...|+.....++
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 2233322 335778999999999999999999999998885532 678888888888888999999999988876543
Q ss_pred CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHH
Q 044084 162 NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241 (343)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (343)
-.-.+|--+.-.|.+.++++.|.-.|++..+-+ +-+.+....+...+.+.|+.|+|++++++....+ +.|+..--..
T Consensus 487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred -hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 233344456677889999999999999888765 3345556667777888899999999999888776 4456666666
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCch-HHHHHHHHHHHhcccChhHHHh
Q 044084 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPN-VWIYNSLMDMHGRAKNLRQLEK 291 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 291 (343)
+..+...+++++|+..++++++. .|+ ...+..+...|.+.|+.+.|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHH
Confidence 77778889999999999998875 454 4567777788999999888876
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=2.1e-12 Score=112.57 Aligned_cols=334 Identities=12% Similarity=0.101 Sum_probs=241.0
Q ss_pred CchhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHH
Q 044084 1 TNSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEIL 80 (343)
Q Consensus 1 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 80 (343)
++.++|..++.+.++..+ .....|..|...|-+.|+.+++...+-.+...+ |.+...|..+.....+.|.+++|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~----p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN----PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHhcccHHHHH
Confidence 367889999999998764 477789999999999999999988776554433 223478999999999999999999
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCcHhHHHHHHHHH
Q 044084 81 KFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVF----LKLVLMYIEEGMVEKTLEVVESM 156 (343)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~ 156 (343)
-.|.+..+.. +++...+---...|-+.|+...|...|.++....++.|..-+ ...++.+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999998874 334444445567788899999999999999887653333322 23455667777778888888877
Q ss_pred Hhc-CCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC---------------------------CCCCHhhHHHHHH
Q 044084 157 KNA-ELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG---------------------------CIPGQVTYASIIN 208 (343)
Q Consensus 157 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~p~~~~~~~ll~ 208 (343)
... +-..+...++.++..+.+...++.+......+.... ..++...+ .++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 652 122455568888888899889998888887776611 11222221 1222
Q ss_pred HHHccCChhHHHHHHHHHHHcC--CCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccCh
Q 044084 209 AYCRIGLYSKAEKVFIEMQQKG--FDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286 (343)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 286 (343)
++.+....+....+...+.+.. +.-+...|.-+..+|...|++.+|+.+|..+...-..-+...|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3344455555555555566655 33356788889999999999999999999998774445677899999999999999
Q ss_pred hHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHH--------hCCCCccHHHHHHHHHHHhcccccc
Q 044084 287 RQLEK---------------YTTVISAYNMAREFDMCVKFYNEFR--------MNGGVIDRAMAGIMVGVFSKLSQIE 341 (343)
Q Consensus 287 ~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~g~~~ 341 (343)
++|.+ -..|...+-+.|+.++|.+.+..+. ..+..|+........+.|...|+.+
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 99987 4566677888999999999998853 3345556666566667777777655
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.65 E-value=1.1e-11 Score=114.73 Aligned_cols=305 Identities=11% Similarity=0.006 Sum_probs=218.7
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCc---HHHHH
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGR---AFEIL 80 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~ 80 (343)
.+|...+..|.+... -+....-.+.....+.|+.++|.++|............ +...-..|+..+.+.+. ..++.
T Consensus 359 ~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 359 AEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL-SQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc-CHHHHHHHHHHHHhCCcccchHHHH
Confidence 455566666666522 35666666777788999999999999988663211111 13345567777777665 33332
Q ss_pred HH----------------------HHHHHhc-CC-CC--ChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044084 81 KF----------------------FRDMKEK-GI-LE--DPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFL 134 (343)
Q Consensus 81 ~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (343)
.+ ++..... +. ++ +...|..+..++.. ++.++|...+.+..... |+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 22 2222111 11 23 45667777777766 78888999888877654 5554444
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 044084 135 KLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIG 214 (343)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 214 (343)
.+...+...|++++|...|+++.... |+...+..+...+...|++++|...+++..+.. +++...+..+.......|
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCC
Confidence 55556678999999999999986543 334456677788889999999999999998874 223333333344455669
Q ss_pred ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---
Q 044084 215 LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK--- 291 (343)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~--- 291 (343)
++++|...++...+.. |+...+..+..++.+.|++++|...+++..... +.+...+..+..++...|+.++|..
T Consensus 591 r~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 591 QPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999865 578889999999999999999999999999863 2255677778788999999998876
Q ss_pred ------------HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044084 292 ------------YTTVISAYNMAREFDMCVKFYNEFRMNG 319 (343)
Q Consensus 292 ------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 319 (343)
+..+..++...|++++|+..+++..+..
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 7888899999999999999999998753
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.2e-11 Score=95.90 Aligned_cols=230 Identities=13% Similarity=0.133 Sum_probs=182.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHhcccC
Q 044084 34 KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILED---PSVYASLICSFASIAE 110 (343)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 110 (343)
-..+.++|.++|-+|.+.. |.+..+--+|.+.|-+.|..+.|+.+.+.+.++.-.+. ......|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 4567899999999997743 55568888999999999999999999999987521111 1223456677889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCch----hhHHHHHHHHhcCCcHHHHHH
Q 044084 111 VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISD----CISCVIVNGFSKRRAYWAAVK 186 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 186 (343)
+|.|+.+|..+.+.+. .-......|+..|-...+|++|+++-+++...+..+.. ..|.-+...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999988553 35678889999999999999999999998877655432 246677777777899999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCC
Q 044084 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGC 266 (343)
Q Consensus 187 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 266 (343)
++.+..+.+ +-.+..--.+.+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+.++.+...
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 999998874 2233333455678889999999999999999987555567888999999999999999999999988643
Q ss_pred Cch
Q 044084 267 EPN 269 (343)
Q Consensus 267 ~p~ 269 (343)
.++
T Consensus 281 g~~ 283 (389)
T COG2956 281 GAD 283 (389)
T ss_pred Ccc
Confidence 333
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=3.1e-13 Score=117.34 Aligned_cols=259 Identities=15% Similarity=0.189 Sum_probs=186.1
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 044084 8 HYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMK 87 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 87 (343)
.++-.+...|+.|+..||..+|.-|+..|+++.|- +|.-|.-+..+.. ...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~---e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR---EGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccccc---chhHHHHHhcccccccccCCC-------
Confidence 46677888999999999999999999999999998 9998887777655 678999999999999887765
Q ss_pred hcCCCCChHhHHHHHHHHhcccCHHH---HHHHHHHHH----HcCCCCCHHHH---------------HHHHHHHHhcCc
Q 044084 88 EKGILEDPSVYASLICSFASIAEVKV---AEELFKEAE----EKGMLRDLEVF---------------LKLVLMYIEEGM 145 (343)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~---------------~~l~~~~~~~~~ 145 (343)
.|-..||..|..+|...||... +.+.+..+. ..|.. ....+ ...+......|-
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~egl 154 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGL 154 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHH
Confidence 6788899999999999999655 333222222 22321 11111 122333344455
Q ss_pred HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC-cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHH
Q 044084 146 VEKTLEVVESMKNAELNISDCISCVIVNGFSKRR-AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFI 224 (343)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 224 (343)
++.+++++..+....-.. .+..+++-+.... .+++...+-+...+ .|+..+|..++.+-...|+.+.|..++.
T Consensus 155 waqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 566666555543221100 1112344444332 23333333333332 5899999999999999999999999999
Q ss_pred HHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh
Q 044084 225 EMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK 291 (343)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 291 (343)
+|.+.|++.+.+-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...|....+..
T Consensus 229 emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 229 EMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred HHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc
Confidence 99999999999888888766 78888899999999999999999999988888877665444443
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=3.7e-11 Score=95.83 Aligned_cols=273 Identities=10% Similarity=0.042 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHH
Q 044084 36 GDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAE 115 (343)
Q Consensus 36 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 115 (343)
|+|.+|+++..+-.+.+..| ...|..-..+.-+.|+.+.+-.++.+.-+....++...+-+........|+.+.|.
T Consensus 98 G~~~qAEkl~~rnae~~e~p----~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP----VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch----HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 66666666666655544433 24455555555666666666666666655433334444555555556666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCch-------hhHHHHHHHHhcCCcHHHHHHHH
Q 044084 116 ELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISD-------CISCVIVNGFSKRRAYWAAVKVY 188 (343)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 188 (343)
.-++++.+.++. ++.+.....++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...|
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 666666665543 4555666666666666666666666666665542222 13444555444444455544555
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC-CCC
Q 044084 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK-GCE 267 (343)
Q Consensus 189 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~ 267 (343)
++..+. .+-++..-..++.-+.+.|+.++|.++..+..+++..|+. .. .-.+.+-++.+.-.+..++-.+. +..
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 554433 2233444444555555666666666666665555544431 11 11223344444444444333322 222
Q ss_pred chHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccc
Q 044084 268 PNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIE 341 (343)
Q Consensus 268 p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 341 (343)
+-.+ ..+...|.+.+.|.+|...|+...+ ..|+..+|+.+..++.+.|+..
T Consensus 328 --p~L~-------------------~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 328 --PLLL-------------------STLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred --hhHH-------------------HHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChH
Confidence 2333 3334444444555555555554443 2455555555555555555443
No 40
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=4.1e-11 Score=95.55 Aligned_cols=276 Identities=12% Similarity=0.023 Sum_probs=215.5
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++.+|.++..+-.+++-.| ...|..-..+.-+.|+.+.+-..+.+..+...++. ....-+..+.....|+++.|..
T Consensus 99 ~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~---l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 99 DFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT---LAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch---HHHHHHHHHHHHhCCCchhHHH
Confidence 6788999998888877543 44566677788899999999999999877644443 5677788889999999999999
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCcHhHHHHHHH
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL-------EVFLKLVLMYIEEGMVEKTLEVVE 154 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 154 (343)
-+.++.+.+.. ++........+|.+.|++..+..++..+.+.|.-.+. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999887644 6677888999999999999999999999998876543 457777776666666666666777
Q ss_pred HHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcC
Q 044084 155 SMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC 234 (343)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (343)
.....- +.+...-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+ -.+.+-++.+.-++..+.-.+.. +-+
T Consensus 254 ~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 765432 23444667788889999999999999999999876666 2222 23566788888777777766553 455
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHH
Q 044084 235 VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLE 290 (343)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 290 (343)
+..+.+|...|.+.+.+.+|...|+...+. .|+..+|+-+.+++.+.|+..+|.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHH
Confidence 688999999999999999999999987765 889999888877777666555443
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=3.6e-11 Score=105.05 Aligned_cols=306 Identities=12% Similarity=0.139 Sum_probs=231.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (343)
.....-.|++++|.+++.++.++... ....|.+|...|-+.|+.+++...+-..-... +-|...|..+.....+.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~----~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR----NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc----chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhc
Confidence 33344459999999999999887643 35899999999999999999988775554443 33667899999999999
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHH----HHHHHHhcCCcHHHH
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISC----VIVNGFSKRRAYWAA 184 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a 184 (343)
|.++.|.-+|.+.++..+. +...+-.-+..|-+.|+...|.+.|.++.+..++.+..-+. .++..+...++.+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999998753 66666677888999999999999999999877633333222 345667777888999
Q ss_pred HHHHHHHHHc-CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc---------------------------CCCcChh
Q 044084 185 VKVYEQLISQ-GCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK---------------------------GFDKCVV 236 (343)
Q Consensus 185 ~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~ 236 (343)
.+.+...... +-..+...++.++..|.+...++.+.......... +++++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 9999887763 23455667888888899989999988887777662 1223333
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhcccChhHHHh----------------HHHHHHH
Q 044084 237 AYSSMVAMYGKTGRIRDAMRLVAKMKPKG--CEPNVWIYNSLMDMHGRAKNLRQLEK----------------YTTVISA 298 (343)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~----------------~~~l~~~ 298 (343)
++ .++-++...+..+....+.....+.. +.-+...|.-+.++|...|++.+|.. |..+..+
T Consensus 380 v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 31 23334455555555555555566655 33456778889999999999999988 8899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCccH-HHHHHHHHHHhcccccccC
Q 044084 299 YNMAREFDMCVKFYNEFRMNGGVIDR-AMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 299 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a 343 (343)
|...|.+++|++.|+..+... |+. ..-.+|...+.+.|+.|+|
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHH
Confidence 999999999999999998853 443 3345677888888887764
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5e-11 Score=96.78 Aligned_cols=315 Identities=12% Similarity=0.138 Sum_probs=199.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHH----------------------------
Q 044084 17 GIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCD---------------------------- 68 (343)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~---------------------------- 68 (343)
+...|...+-.....+-+.|....|.+.|......-+-. -.+|..|..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~----W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWF----WSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcc----hHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHH
Confidence 444566666666667778888898988887765533211 122322222
Q ss_pred -HhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCc
Q 044084 69 -SLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGML--RDLEVFLKLVLMYIEEGM 145 (343)
Q Consensus 69 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 145 (343)
++-...+.++++.-.+.+...|.+-+...-+....+.-...|++.|+.+|+++.+..+- -|..+|..++-.-....+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 22222344445554555555554433333333334445566777777777777776321 145566555432221111
Q ss_pred Hh-HHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHH
Q 044084 146 VE-KTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFI 224 (343)
Q Consensus 146 ~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 224 (343)
+. -|..++. + .. --..|..++...|+-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++
T Consensus 315 Ls~LA~~v~~-i--dK--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSN-I--DK--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH-h--cc--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 1111111 1 11 122356667777777888888888888888775 3445678888888888888888888888
Q ss_pred HHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh-------------
Q 044084 225 EMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK------------- 291 (343)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~------------- 291 (343)
..++.. |.|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|.++|.+.++.++|++
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 888876 6678888888888888888888888888888752 3367888888888888888888887
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCcc-H-HHHHHHHHHHhcccccccC
Q 044084 292 --YTTVISAYNMAREFDMCVKFYNEFRM----NGGVID-R-AMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 292 --~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~-~~~~~l~~~~~~~g~~~~a 343 (343)
+..+...|-+.++.++|.+.|.+.++ .|..-+ . ...--|..-+.+.+++++|
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 77888888888999999888887655 233222 1 1222255566777777654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.7e-12 Score=108.46 Aligned_cols=271 Identities=9% Similarity=0.060 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcC--CCCChHhHHHHHHHHhcccCHHHH
Q 044084 37 DSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKG--ILEDPSVYASLICSFASIAEVKVA 114 (343)
Q Consensus 37 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 114 (343)
+..+|...|..+.++.... ......+.++|...+++++|.++|+.+.+.. ..-+..+|++.+--+- + +-+
T Consensus 334 ~~~~A~~~~~klp~h~~nt----~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNT----GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVA 405 (638)
T ss_pred HHHHHHHHHHhhHHhcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHH
Confidence 4578888888866554322 3666778899999999999999999998753 1125667777664332 2 222
Q ss_pred HHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 115 EELF-KEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 115 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
+..+ +.+.+... -.+.+|.++..+|.-.++.+.|++.|++..+.++ -...+|+.+..-+.....+|.|...|+....
T Consensus 406 Ls~Laq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 3333 34444432 3789999999999999999999999999988775 3667888888888888999999999998775
Q ss_pred cCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHH
Q 044084 194 QGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIY 273 (343)
Q Consensus 194 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 273 (343)
.. +-+-..|--+.-.|.+.++++.|+-.|+...+.+ |.+.+....+...+-+.|+.++|++++++......+ |+-.-
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 41 1122344456677899999999999999998876 556777778888889999999999999999876332 32222
Q ss_pred HHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHH-HHHHHHHHHhcccccc
Q 044084 274 NSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRA-MAGIMVGVFSKLSQIE 341 (343)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~ 341 (343)
-.-+. .+...+++++|+..++++++. .|+.. .|..+...|.+.|+.+
T Consensus 561 ~~~~~-------------------il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 561 YHRAS-------------------ILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHH-------------------HHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccch
Confidence 22222 233455666666666666653 34443 3555666666666544
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=7.2e-12 Score=110.89 Aligned_cols=260 Identities=13% Similarity=0.043 Sum_probs=178.5
Q ss_pred CChhhHHHHHHHHH-----hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhh---------ccCcHHHHHHHHHH
Q 044084 20 LDSGCYCQIMEAFY-----KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLG---------KSGRAFEILKFFRD 85 (343)
Q Consensus 20 ~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~ 85 (343)
.+...|...+.+-. ..+++++|..+|++..+.. |.....|..+..++. ..+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld----P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS----PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 45555555555432 2256899999999987654 333566766665443 33458899999999
Q ss_pred HHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCch
Q 044084 86 MKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISD 165 (343)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (343)
..+.+.. +...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.++. +.
T Consensus 330 Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 8887532 5677777888888899999999999999987643 6778888899999999999999999999887653 22
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 044084 166 CISCVIVNGFSKRRAYWAAVKVYEQLISQGCIP-GQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 244 (343)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (343)
..+..++..+...|++++|...++++.... .| +...+..+..++...|+.++|...+..+.... +.+....+.+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHH
Confidence 233344445666889999999999987664 24 34456667778888999999999998876653 2334455666667
Q ss_pred HHccCChHHHHHHHHHHhhC-CCCchHHHHHHHHHHHhcccChhHHHhH
Q 044084 245 YGKTGRIRDAMRLVAKMKPK-GCEPNVWIYNSLMDMHGRAKNLRQLEKY 292 (343)
Q Consensus 245 ~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 292 (343)
|...| ++|...++.+.+. ...|....+..++ +.-.|+.+.+..|
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~ 529 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW 529 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH
Confidence 77777 4777777776653 2233333333333 3334454444433
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=1.3e-11 Score=97.45 Aligned_cols=200 Identities=15% Similarity=0.101 Sum_probs=143.5
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4567777788888888888888888877653 224556677777788888888888888887776543 56677777788
Q ss_pred HHhcCcHhHHHHHHHHHHhcCC-CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhH
Q 044084 140 YIEEGMVEKTLEVVESMKNAEL-NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSK 218 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 218 (343)
+...|++++|.+.+++...... +.....+..+..++...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888765422 1223356666777778888888888888877653 2345566777777888888888
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 219 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888887776 244556666777777778888888877776654
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=1.3e-11 Score=97.37 Aligned_cols=202 Identities=13% Similarity=0.051 Sum_probs=167.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
....+..+...+...|++++|.+.+++..+.. |.+...+..+...+...|++++|.+.+++..+... .+...+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~ 104 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD----PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 35678888999999999999999999987654 33357888899999999999999999999988643 35567778
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGML-RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR 179 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (343)
+...+...|++++|...+++..+.... .....+..+...+...|++++|...+++...... .+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcC
Confidence 888999999999999999999875322 2456777888999999999999999999987654 34567888899999999
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998887 3445667777788888999999999988877653
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=1.1e-11 Score=109.78 Aligned_cols=233 Identities=12% Similarity=0.000 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHhcCCCCChHhHHHHHHHHh---------cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHh
Q 044084 77 FEILKFFRDMKEKGILEDPSVYASLICSFA---------SIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVE 147 (343)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (343)
++|+..|++..+.... +...|..+..++. ..+++++|...+++..+..+. +...+..+...+...|+++
T Consensus 278 ~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 278 QQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHH
Confidence 7899999998886422 3445555544433 234589999999999987754 7888989999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHccCChhHHHHHHHHH
Q 044084 148 KTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQ-VTYASIINAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 226 (343)
+|...|++..+.++ .+...+..+...+...|++++|...+++..+.. |+. ..+..++..+...|++++|...++++
T Consensus 356 ~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 356 VGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999988875 456678888899999999999999999998874 432 23334444566689999999999998
Q ss_pred HHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHH-HHHHHHHHhcccChhHHHh--------------
Q 044084 227 QQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWI-YNSLMDMHGRAKNLRQLEK-------------- 291 (343)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~-------------- 291 (343)
.+...+-++..+..+..++...|+.++|...+.++... .|+..+ .+.+...|...|+ .+..
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDN 508 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhc
Confidence 87642334556777888899999999999999987665 444433 4445556676664 3322
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044084 292 -YTTVISAYNMAREFDMCVKFYNEFRMNG 319 (343)
Q Consensus 292 -~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 319 (343)
....-..|.-.|+.+.+..+ +++.+.|
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22244445556776666665 7776654
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=6.8e-12 Score=101.71 Aligned_cols=157 Identities=11% Similarity=0.154 Sum_probs=104.2
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHH
Q 044084 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRL 257 (343)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (343)
.|++++|.+.|++.......-....|++-+ .+-..|++++|+..|-.+... +..+..+...+...|-...+...|.++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 467778888888777654333333444333 345678888888877766543 123566677777888888888888888
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh----------------------------------------------
Q 044084 258 VAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------------------------------------- 291 (343)
Q Consensus 258 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------------------------------------- 291 (343)
+-+.... ++.|+.....|.+.|-+.|+-..|.+
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 8777654 55577888888889999998888876
Q ss_pred --HHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccc
Q 044084 292 --YTTVISAY-NMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLS 338 (343)
Q Consensus 292 --~~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 338 (343)
|..|+..| .+.|++++|.++|++.... ++.|.....-|++.+...|
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 55554333 4556677777766666554 3445556666666655544
No 49
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.53 E-value=5.4e-11 Score=104.74 Aligned_cols=334 Identities=13% Similarity=0.140 Sum_probs=173.3
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccC----cHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSG----RAF 77 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~ 77 (343)
|+++|...|-+..+....--...+--|.+.+.+.|+++.+...|+.+.... |.+..+...|...|...+ ..+
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~----p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL----PNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC----cchHHHHHHHHhHHHhhhhhhHHHH
Confidence 566777777555554321112334456677777777777777777776654 333456666666665553 345
Q ss_pred HHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHH
Q 044084 78 EILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA----EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVV 153 (343)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (343)
.|..++.+..+.. +.|...|-.+...+-...-+ .++..+..+ ...+-.+-+...|.+...+...|++++|...|
T Consensus 398 ~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 398 KASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 5555555554442 22455555555444433322 224444332 23344455666666666666666666666666
Q ss_pred HHHHhc---CCCCch------hhHHHHHHHHhcCCcHHHHHHHHHHHHHcC-----------------------------
Q 044084 154 ESMKNA---ELNISD------CISCVIVNGFSKRRAYWAAVKVYEQLISQG----------------------------- 195 (343)
Q Consensus 154 ~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------------- 195 (343)
...... ...++. .+--.+...+-..++.+.|.++|..+.+..
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 655433 111111 111122233333334444444444433321
Q ss_pred ----CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCcChhhHHHHHHHHHc------------cCChHHHHHHH
Q 044084 196 ----CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK-GFDKCVVAYSSMVAMYGK------------TGRIRDAMRLV 258 (343)
Q Consensus 196 ----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~ 258 (343)
...++..++.+...+.+...+..|.+-|+.+.+. ...+|+.+.-+|...|.+ .+..++|+++|
T Consensus 556 ~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 556 ALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred HHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 0112222222333344444444444444333322 112344444444443332 13346677777
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCc
Q 044084 259 AKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFRMN-GGVI 322 (343)
Q Consensus 259 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p 322 (343)
.+..+.. +-|.+.-+.+.-.++..|++.+|.. |..+..+|...|+|..|+++|+.-.+. +..-
T Consensus 636 ~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 636 GKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred HHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 7766652 2355666666667777777777766 667777777888888888887765443 3344
Q ss_pred cHHHHHHHHHHHhccccccc
Q 044084 323 DRAMAGIMVGVFSKLSQIEE 342 (343)
Q Consensus 323 ~~~~~~~l~~~~~~~g~~~~ 342 (343)
+......|.+++.++|++.+
T Consensus 715 ~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 715 RSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred CHHHHHHHHHHHHHhhhHHH
Confidence 55567777777777777654
No 50
>PF13041 PPR_2: PPR repeat family
Probab=99.48 E-value=1.2e-13 Score=79.56 Aligned_cols=50 Identities=30% Similarity=0.637 Sum_probs=33.9
Q ss_pred cChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhc
Q 044084 233 KCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGR 282 (343)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 282 (343)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=6.6e-11 Score=96.11 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=162.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhc--cCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc
Q 044084 31 AFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK--SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108 (343)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (343)
.+.++|+++.|.+++.-+.+++.... ..+-+.|-..+.- -.++..|.+.-+..+..+ .-+......-.+.....
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~---saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTA---SAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhh---HHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 47788999999999888877654433 2233333322222 335666766666554432 11222222222334456
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHH
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (343)
|+++.|...+++.......-....| .+.-.+-..|++++|++.|-++...-. .+......+...|-...++.+|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 8888888888888765432222222 234456677888888888877654322 34455666777777778888888888
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCc
Q 044084 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEP 268 (343)
Q Consensus 189 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 268 (343)
.+.... ++.|+.....+...|-+.|+-..|.+.+-+--+. ++-+..+..-|...|....-++++...|++..- +.|
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 776554 4556777788888888888888877765443332 566777777788888888788888888887654 478
Q ss_pred hHHHHHHHHHHH-hcccChhHHHh
Q 044084 269 NVWIYNSLMDMH-GRAKNLRQLEK 291 (343)
Q Consensus 269 ~~~~~~~l~~~~-~~~~~~~~a~~ 291 (343)
+..-|..++..| .+.|++..|..
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHH
Confidence 888888777654 45788887766
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.48 E-value=2.3e-09 Score=91.09 Aligned_cols=305 Identities=10% Similarity=0.080 Sum_probs=152.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHH
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLIC 103 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (343)
+|..-.+.|.+.+.++-|..+|....+-- |.....|......--..|..++...+|++....- +-....|-....
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf----p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ak 592 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF----PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAK 592 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHH
Confidence 44444555555555555555555443322 2223445444444444455555555555554431 112233333344
Q ss_pred HHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHH
Q 044084 104 SFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183 (343)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (343)
.+...|+...|..++.+..+..+. +...|-.-+..-.....++.|..+|.+..... |+...|.--+....-.+..++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHH
Confidence 444445555555555555544332 44445555555555555555555555444322 233333333333333344444
Q ss_pred HHHHHHHHHHc---------------------------------CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 044084 184 AVKVYEQLISQ---------------------------------GCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230 (343)
Q Consensus 184 a~~~~~~~~~~---------------------------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (343)
|.+++++..+. .++-....|..+.+.=-+.|.+-.|..+++...-.+
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 44444443332 012222334444444444555666666666655544
Q ss_pred CCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh-----------HHHHHHHH
Q 044084 231 FDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK-----------YTTVISAY 299 (343)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-----------~~~l~~~~ 299 (343)
+.+...|-..|++-.+.|+.+.|..+..+..+. ++.+...|..-|....+.++-..+.. ...+...|
T Consensus 750 -Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 750 -PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred -CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 445566666666666666666666666555554 23334444444444443333222211 55566677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccc
Q 044084 300 NMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQ 339 (343)
Q Consensus 300 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 339 (343)
....+++.|.+.|.+.+..+.. +..+|.-+..-+.+.|.
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCC
Confidence 7788899999999998876432 33556666666666663
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=4.2e-09 Score=89.51 Aligned_cols=232 Identities=8% Similarity=0.054 Sum_probs=128.4
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcH
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (343)
...|.+.+.++-+..+|....+--+ .+...|......=-..|..+....+|++....-+ -....|......+-..|+.
T Consensus 523 a~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv 600 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDV 600 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCc
Confidence 3334444444444444444444321 1334444444443444455555555555544332 2233444444555556666
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHH
Q 044084 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM 261 (343)
Q Consensus 182 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 261 (343)
..|..++.+..+.. +.+...|-.-++.-.....++.|..+|...... .|+...|..-+....-.++.++|.+++++.
T Consensus 601 ~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~ 677 (913)
T KOG0495|consen 601 PAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEA 677 (913)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHH
Confidence 66666666666653 224455555566666666666676666666553 355666666666556666677777777666
Q ss_pred hhCCCCchH-HHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHH
Q 044084 262 KPKGCEPNV-WIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRA 325 (343)
Q Consensus 262 ~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 325 (343)
.+. .|+- ..|..+.+.+-+.++.+.|.. |..+...--+.|.+-+|..++++.+-.+.+ +..
T Consensus 678 lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~ 754 (913)
T KOG0495|consen 678 LKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NAL 754 (913)
T ss_pred HHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cch
Confidence 654 3333 455666666666666666665 555555555666666777777766665533 445
Q ss_pred HHHHHHHHHhcccccc
Q 044084 326 MAGIMVGVFSKLSQIE 341 (343)
Q Consensus 326 ~~~~l~~~~~~~g~~~ 341 (343)
.|-..++.=.|.|..+
T Consensus 755 lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKE 770 (913)
T ss_pred hHHHHHHHHHHcCCHH
Confidence 5666666655555544
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.47 E-value=2.4e-10 Score=100.81 Aligned_cols=266 Identities=13% Similarity=0.119 Sum_probs=174.2
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhc---CCCCCh------HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEK---GILEDP------SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL 130 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (343)
.+..|.+...+...|.+..|...|.+.+.. ...++. .+--.+....-..++.+.|.+.|..+.+..+. -+
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YI 530 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YI 530 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hH
Confidence 356666666666667777666666665543 112222 11112334444555666666666666664321 23
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC-CCCCHhhHHHHHHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG-CIPGQVTYASIINA 209 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~ 209 (343)
..|-.++.+....+...+|...+....+.+- .+...++.+...+.....+..|.+-|....+.- ..+|.++...|.+.
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 3444444344445666777777777665443 344456666667777777877877666665542 23566666666665
Q ss_pred HHc------------cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHH
Q 044084 210 YCR------------IGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277 (343)
Q Consensus 210 ~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 277 (343)
|.+ .+..++|+++|..+.+.. |.|...-|-+.-+++..|++..|..+|.+.++... -+..+|..+.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNla 687 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLA 687 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHH
Confidence 542 234677888888888875 56778888888888999999999999999888632 2456778888
Q ss_pred HHHhcccChhHHHh-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 044084 278 DMHGRAKNLRQLEK-----------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGI 329 (343)
Q Consensus 278 ~~~~~~~~~~~a~~-----------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 329 (343)
.+|...|++..|.+ ...|..++.+.|.+.+|.+.+...+...+.-...-||.
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 88888898888887 67788888889999999998888877654433334543
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=3.3e-13 Score=77.76 Aligned_cols=47 Identities=21% Similarity=0.447 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 044084 164 SDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAY 210 (343)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 210 (343)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444433
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=1.4e-09 Score=93.66 Aligned_cols=277 Identities=17% Similarity=0.185 Sum_probs=190.9
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhcc-----CcH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKS-----GRA 76 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~ 76 (343)
++++|++.++.-.+. +.............+.+.|+.++|..+|..+.+++ |.+...|..+..+.... .+.
T Consensus 19 ~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN----Pdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 19 DYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN----PDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred CHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHhhhcccccccH
Confidence 567888888765443 43445567778889999999999999999998887 44456677777666322 256
Q ss_pred HHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHH
Q 044084 77 FEILKFFRDMKEKGILEDPSVYASLICSFASIAEV-KVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVES 155 (343)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (343)
+...++|+++...- |.......+.-.+.....+ ..+...+..+...|++ .+++.|-..|....+.+-..+++..
T Consensus 94 ~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 94 EKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred HHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHH
Confidence 77788888887653 4333333332223322223 3445556666777753 4666777777766666666666666
Q ss_pred HHhc----C----------CCCch--hhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCChhH
Q 044084 156 MKNA----E----------LNISD--CISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPG-QVTYASIINAYCRIGLYSK 218 (343)
Q Consensus 156 ~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~ 218 (343)
.... + -+|+. +++..+...|-..|++++|++++++.++. .|+ +..|..-.+.+-+.|++.+
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 5432 1 12343 34456677888899999999999999987 465 5677777888999999999
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHH--------HHHHHHHHhcccChhHHH
Q 044084 219 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWI--------YNSLMDMHGRAKNLRQLE 290 (343)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--------~~~l~~~~~~~~~~~~a~ 290 (343)
|.+.++.....+ .-|...-+..+..+.++|++++|.+++......+..|-... ......+|.+.|++..|.
T Consensus 247 Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999886 45777778888899999999999999999887765432211 133445677777777766
Q ss_pred h
Q 044084 291 K 291 (343)
Q Consensus 291 ~ 291 (343)
+
T Consensus 326 k 326 (517)
T PF12569_consen 326 K 326 (517)
T ss_pred H
Confidence 5
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=2.3e-11 Score=94.58 Aligned_cols=229 Identities=13% Similarity=0.128 Sum_probs=173.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhH-HHHHHH
Q 044084 26 CQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVY-ASLICS 104 (343)
Q Consensus 26 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 104 (343)
+.+.++|.+.|.+.+|.+.|+...++..-+ .+|..|-++|.+-.++..|+.++.+-++. .|-.+|| .-..+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-----dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-----DTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch-----hHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 567788888888888888888776654433 47888888888888888888888887765 4444444 345566
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (343)
+-..++.+++.++++...+.... ++.....+...|.-.++++.|+..|+++.+.|+ -+...|+.+.-+|.-.++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhh
Confidence 77778888888888888876542 666666777777788888888888888888887 5667788888888888888888
Q ss_pred HHHHHHHHHcCCCCCH--hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHh
Q 044084 185 VKVYEQLISQGCIPGQ--VTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 185 ~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
+.-|.+....--.|+. .+|-.+-......|++..|.+-|+-....+ ..+...++.|.-.-.+.|++++|..+++...
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 8888887765333433 456666666677888888888888877765 3456778888877788888888888888777
Q ss_pred hC
Q 044084 263 PK 264 (343)
Q Consensus 263 ~~ 264 (343)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 54
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=1.6e-09 Score=93.38 Aligned_cols=278 Identities=17% Similarity=0.175 Sum_probs=198.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhH-HHHHHH
Q 044084 26 CQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVY-ASLICS 104 (343)
Q Consensus 26 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 104 (343)
-.....+...|++++|++.++.-...- ... ..........+.+.|+.++|..+|..+...+ |+...| ..+..+
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I-~Dk---~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQI-LDK---LAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhC-CCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 334566789999999999997754433 222 5677788899999999999999999999985 455544 444444
Q ss_pred Hhc-----ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC
Q 044084 105 FAS-----IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMV-EKTLEVVESMKNAELNISDCISCVIVNGFSKR 178 (343)
Q Consensus 105 ~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (343)
..- ..+.+....+++++...- |.......+.-.+..-..+ ..+...+..+...|+ |+ +|+.+-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-Ps--lF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-PS--LFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-ch--HHHHHHHHHcCh
Confidence 422 235778888899887754 3333332232222222223 345556677788888 44 677777777766
Q ss_pred CcHHHHHHHHHHHHHc----C----------CCCCHh--hHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHH
Q 044084 179 RAYWAAVKVYEQLISQ----G----------CIPGQV--TYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242 (343)
Q Consensus 179 ~~~~~a~~~~~~~~~~----~----------~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (343)
....-..+++...... + -+|+.. ++.-+...|-..|++++|.++++...++. |..+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 6666666666665432 1 123332 34555677889999999999999999985 33477888999
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh------------------------HHHHHHH
Q 044084 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK------------------------YTTVISA 298 (343)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~------------------------~~~l~~~ 298 (343)
+.+-+.|++.+|.+.++..+..... |...-+-.+..+.+.|+.++|+. ......+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987543 67777778888999999999988 4566788
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 044084 299 YNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 299 ~~~~g~~~~a~~~~~~m~ 316 (343)
|.+.|++..|++-|....
T Consensus 315 ~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 999999999887666553
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=5.1e-10 Score=95.33 Aligned_cols=240 Identities=18% Similarity=0.163 Sum_probs=155.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc-----CC
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFLECESR-----KLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK-----GI 91 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~ 91 (343)
..+...+...|...|+++.|..++.+..+. |.. .+.-....+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 346666888888888888888888776544 111 1222344455677788888888888888887652 21
Q ss_pred C-C-ChHhHHHHHHHHhcccCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHhc---
Q 044084 92 L-E-DPSVYASLICSFASIAEVKVAEELFKEAEEK-----GML-RD-LEVFLKLVLMYIEEGMVEKTLEVVESMKNA--- 159 (343)
Q Consensus 92 ~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 159 (343)
. | -..+++.|..+|.+.|++++|...+++..+. |.. |. ...++.+...++..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1 1 2345666777788888888888777766541 111 11 233556667777788888888887765321
Q ss_pred CCCC----chhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC-------CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 160 ELNI----SDCISCVIVNGFSKRRAYWAAVKVYEQLISQG-------CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 160 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
-+.+ -..+++.|...|...|++++|.+++++..... ..-....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1111 12367788888888888888888888776531 111234567777778888888888887776443
Q ss_pred c----CC--CcChhhHHHHHHHHHccCChHHHHHHHHHHh
Q 044084 229 K----GF--DKCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 229 ~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
. |. +-...+|..|...|.+.|+++.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 21 1224577788888888888888888776665
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.2e-10 Score=90.66 Aligned_cols=231 Identities=10% Similarity=0.011 Sum_probs=181.5
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044084 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEE 143 (343)
Q Consensus 64 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (343)
+.+.++|.+.|-+.+|.+.|+.-+.. .|-+.||-.|-+.|.+..++..|+.++.+-.+.-+ -++.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHH
Confidence 46788999999999999999988776 56677888899999999999999999988887543 3666667788888899
Q ss_pred CcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHH
Q 044084 144 GMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVF 223 (343)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 223 (343)
++.++|.++|+...+... .++....++...|.-.++++.|+.+|+++.+.|+ -+...|+.+.-+|.-.+++|-+..-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999887765 5666777777888888999999999999999985 46677888887888888999999888
Q ss_pred HHHHHcCCCcC--hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHh
Q 044084 224 IEMQQKGFDKC--VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNM 301 (343)
Q Consensus 224 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~ 301 (343)
.+....--.|+ ..+|..+-......|++..|.+.|+-....+.. +... ++.|.-.-.+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ea-------------------lnNLavL~~r 441 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEA-------------------LNNLAVLAAR 441 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHH-------------------HHhHHHHHhh
Confidence 88776543343 456778888888889999999988887765211 2333 4444445567
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 044084 302 AREFDMCVKFYNEFRMNG 319 (343)
Q Consensus 302 ~g~~~~a~~~~~~m~~~~ 319 (343)
.|++++|..+++......
T Consensus 442 ~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 442 SGDILGARSLLNAAKSVM 459 (478)
T ss_pred cCchHHHHHHHHHhhhhC
Confidence 888888888888877643
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=2e-09 Score=87.62 Aligned_cols=223 Identities=11% Similarity=-0.001 Sum_probs=157.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHH
Q 044084 34 KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKV 113 (343)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (343)
..+..+.+..-+.++.......++.....|..+...+...|++++|...|++..+... .+...|+.+...+...|+++.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHH
Confidence 3456677788887777543222222246688888899999999999999999988643 357789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 114 AEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 114 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
|...|++..+..+. +..++..+...+...|++++|.+.|+...+..+ +..........+...+++++|...|.+...
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999986643 577888899999999999999999999887664 222122222234457789999999977654
Q ss_pred cCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc---CC---CcChhhHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 044084 194 QGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK---GF---DKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 194 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 265 (343)
.. .|+... ..+.. ...|+...+ ..+..+.+. .. +.....|..+...+.+.|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 333222 22222 334555544 344444432 10 1124578899999999999999999999999764
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=7.5e-11 Score=102.92 Aligned_cols=256 Identities=11% Similarity=0.042 Sum_probs=178.3
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHH
Q 044084 43 ALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAE 122 (343)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 122 (343)
.++-.+...|+.|+ ..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~Pn---RvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPN---RVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHHHhcCCCc---hhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 45677888899888 789999999999999999998 9999988877778889999999988888877766
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCcHhH---HHHHHHHHH----hcCCCCchhhHH--------------HHHHHHhcCCcH
Q 044084 123 EKGMLRDLEVFLKLVLMYIEEGMVEK---TLEVVESMK----NAELNISDCISC--------------VIVNGFSKRRAY 181 (343)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~~--------------~l~~~~~~~~~~ 181 (343)
.|.+.+|..|..+|...||... +.+.++.+. ..|+-.....+- ..+.-....|.+
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 5889999999999999999654 333222222 122211111111 122222333444
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHH
Q 044084 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM 261 (343)
Q Consensus 182 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 261 (343)
+.+.+++..+....- +. ++..+++-+.. ...-.+++........-.|++.+|..++.+-..+|+.+.|..++.+|
T Consensus 156 aqllkll~~~Pvsa~--~~-p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAW--NA-PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHHhhCCcccc--cc-hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 455554444332210 00 11112443332 23334444444443322589999999999999999999999999999
Q ss_pred hhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccccc
Q 044084 262 KPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQI 340 (343)
Q Consensus 262 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 340 (343)
.+.|+..+..-|..|+-+ .+...-+..+++.|.+.|+.|+..|+...+..+..+|..
T Consensus 231 ke~gfpir~HyFwpLl~g----------------------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG----------------------INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHcCCCcccccchhhhhc----------------------CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 999998888766655432 556677889999999999999999998888887776654
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=6.7e-08 Score=79.42 Aligned_cols=305 Identities=11% Similarity=0.048 Sum_probs=155.7
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKF 82 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 82 (343)
.+.|.++|++.+..+. .+...|-..+.+=.++..+..|..+++.....-+.. ...|-..+..=-..|+...|.++
T Consensus 89 ~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV----dqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 89 IQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV----DQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH----HHHHHHHHHHHHHhcccHHHHHH
Confidence 4567777777776543 345556666666666666666666666654433222 23444444444444555555555
Q ss_pred HHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHH-------
Q 044084 83 FRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVES------- 155 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------- 155 (343)
|++-.+- .|+...|.+.++.=.+-+.++.|..++++.+--. |++..|-...+.=.+.|....|..+|+.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 5544432 4555555555555555555555555555444321 3333333333333333333222222222
Q ss_pred ------------------------------HHhc-------------------------------------------CCC
Q 044084 156 ------------------------------MKNA-------------------------------------------ELN 162 (343)
Q Consensus 156 ------------------------------~~~~-------------------------------------------~~~ 162 (343)
..+. .-+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 1110 001
Q ss_pred CchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHh--hHHHHH----H-HH---HccCChhHHHHHHHHHHHc---
Q 044084 163 ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQV--TYASII----N-AY---CRIGLYSKAEKVFIEMQQK--- 229 (343)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll----~-~~---~~~~~~~~a~~~~~~~~~~--- 229 (343)
-|-.+|--.++.-...|+.+...++|++.... ++|-.. .|...| + ++ ....+++.+.+++....+.
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc
Confidence 23344555556566667778888888777755 333211 111111 1 11 1345566666666554442
Q ss_pred ---------------------------------CCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHH
Q 044084 230 ---------------------------------GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSL 276 (343)
Q Consensus 230 ---------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 276 (343)
|.-|-..+|...|..-.+.++++....++++.++.+ +-|..+|...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 222444555555555555566666666666666543 2245556555
Q ss_pred HHHHhcccChhHHHh-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044084 277 MDMHGRAKNLRQLEK-----------------YTTVISAYNMAREFDMCVKFYNEFRMN 318 (343)
Q Consensus 277 ~~~~~~~~~~~~a~~-----------------~~~l~~~~~~~g~~~~a~~~~~~m~~~ 318 (343)
...=...|+.+.|.. |...|+--...|.++.|..+++++++.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 555555566665554 555666666777788888888877665
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=3.4e-09 Score=78.74 Aligned_cols=173 Identities=10% Similarity=0.006 Sum_probs=75.4
Q ss_pred HHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHH
Q 044084 103 CSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182 (343)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (343)
-.|...|+...|..-+++.+++.+. +..+|..+...|.+.|..+.|.+.|++..+..+ -+..+.|.....+|..|+++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCChH
Confidence 3444444444444444444444322 344444444444444444444444444444333 23333444444444444455
Q ss_pred HHHHHHHHHHHcC-CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHH
Q 044084 183 AAVKVYEQLISQG-CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM 261 (343)
Q Consensus 183 ~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 261 (343)
+|...|++....- ..-...+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++..|...++..
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 5544444444331 11112334444444444455555555554444432 222333444444444455555555444444
Q ss_pred hhCCCCchHHHHHHHHHH
Q 044084 262 KPKGCEPNVWIYNSLMDM 279 (343)
Q Consensus 262 ~~~~~~p~~~~~~~l~~~ 279 (343)
...+. ++..+.-..|+.
T Consensus 200 ~~~~~-~~A~sL~L~iri 216 (250)
T COG3063 200 QQRGG-AQAESLLLGIRI 216 (250)
T ss_pred Hhccc-ccHHHHHHHHHH
Confidence 44332 344443333333
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=1.3e-08 Score=82.88 Aligned_cols=240 Identities=12% Similarity=0.040 Sum_probs=162.9
Q ss_pred ccCcHHHHHHHHHHHHhcC-CCCC--hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhH
Q 044084 72 KSGRAFEILKFFRDMKEKG-ILED--PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEK 148 (343)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (343)
..+..+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|++..+..+. +...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 3456778888888887642 2222 345777778889999999999999999987653 78999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 149 TLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
|.+.|++..+..+ -+..+|..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.....
T Consensus 117 A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999999988765 345678888888999999999999999998863 4433222222334556789999999977654
Q ss_pred cCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHH
Q 044084 229 KGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMC 308 (343)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a 308 (343)
.. +|+...+ .+ .....|+...+ +.+..+.+. +.-+...-..+ +..|..+...+.+.|++++|
T Consensus 194 ~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~-~~~~~~l~~~~------------~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 194 KL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAG-ATDNTELAERL------------CETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred hC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhc-CCCcHHHHHHH------------HHHHHHHHHHHHHCCCHHHH
Confidence 32 3333222 22 23345665544 345555432 11111111111 11255667778889999999
Q ss_pred HHHHHHHHhCCCCccHHHH-HHHHHHH
Q 044084 309 VKFYNEFRMNGGVIDRAMA-GIMVGVF 334 (343)
Q Consensus 309 ~~~~~~m~~~~~~p~~~~~-~~l~~~~ 334 (343)
+..|++..+.++ ||..-+ ..++...
T Consensus 256 ~~~~~~Al~~~~-~~~~e~~~~~~e~~ 281 (296)
T PRK11189 256 AALFKLALANNV-YNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHhCC-chHHHHHHHHHHHH
Confidence 999999998764 344433 3344433
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.4e-08 Score=83.52 Aligned_cols=181 Identities=15% Similarity=0.175 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 212 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 212 (343)
|-.+..+|...++.++-...|.+....++ -+..+|..-.....-.+++++|..=|++.+... +-+...|..+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence 44444555555556666666666555554 234445555555555556666666666655542 2233445555555556
Q ss_pred cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCC-----CCchHHH--HHHHHHHHhcccC
Q 044084 213 IGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG-----CEPNVWI--YNSLMDMHGRAKN 285 (343)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~--~~~l~~~~~~~~~ 285 (343)
.++++++...|++..+. +|..+..|+.....+...+++++|.+.|+..++.. +..+..+ --.++..- -.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 77777788888777765 56667778888888888888888888887776541 1111111 11111111 2255
Q ss_pred hhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 286 LRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFRM 317 (343)
Q Consensus 286 ~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~~ 317 (343)
+..|.. |..|...-.+.|+.++|+++|++...
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555544 77788888888888888888887543
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=2.4e-09 Score=91.30 Aligned_cols=24 Identities=8% Similarity=0.326 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 044084 292 YTTVISAYNMAREFDMCVKFYNEF 315 (343)
Q Consensus 292 ~~~l~~~~~~~g~~~~a~~~~~~m 315 (343)
|..|...|.+.|+++.|+++.+..
T Consensus 453 ~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 453 YLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHH
Confidence 555666666677777777766655
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.7e-09 Score=87.18 Aligned_cols=267 Identities=15% Similarity=0.090 Sum_probs=176.8
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKF 82 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 82 (343)
+++.+.+++.+.+..+ +....+..-|.++...|+..+-..+=.++.+.. |....+|-++..-|...|+..+|.+.
T Consensus 260 f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y----P~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 260 FKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY----PSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred HHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC----CCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 4556667777766543 566666666777777777777666666665544 33346777777777777888888888
Q ss_pred HHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC
Q 044084 83 FRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN 162 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (343)
|.+....+.. -...|-.....|+-.+..++|...+...-+.-.... .-+--+.--|.+.++.+.|.+.|.+.....+
T Consensus 335 ~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P- 411 (611)
T KOG1173|consen 335 FSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLAEKFFKQALAIAP- 411 (611)
T ss_pred HHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHHHHHHHHHHhcCC-
Confidence 8776554211 234677777777777888888877776665322111 1112234456777778888888877766544
Q ss_pred CchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc----C--CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChh
Q 044084 163 ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ----G--CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVV 236 (343)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (343)
.|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|+..++...... +.+..
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~ 490 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDAS 490 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchh
Confidence 45555666655556677788888888776521 0 01123456777788888888888888888877764 56777
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 044084 237 AYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMH 280 (343)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 280 (343)
++.++.-.|...|+++.|.+.|.+... +.||..+...++..+
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 888888888888888888888887775 477776666665543
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=8.1e-09 Score=76.77 Aligned_cols=207 Identities=13% Similarity=0.010 Sum_probs=162.0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (343)
.+...|.-.|...|++..|..-+++.++.+.. +..+|..+...|.+.|+.+.|.+-|++..+..+. +..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 45667778889999999999999998887532 5667888888899999999999999998887654 788888999999
Q ss_pred HhcCcHhHHHHHHHHHHhcCC-CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHH
Q 044084 141 IEEGMVEKTLEVVESMKNAEL-NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKA 219 (343)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 219 (343)
|..|++++|...|++...... .....+|..+.-+..+.|+++.|...|++..+.. +-...+.-.+.+...+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 999999999999998775432 1223478888888888999999999999988774 22345666777888888999999
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHH
Q 044084 220 EKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIY 273 (343)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 273 (343)
...++.....+. ++..+.-..|+.--..|+-+.+-+.=..+... .|...-+
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 999988888764 77777777788888888888887766666654 4544433
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.3e-08 Score=83.66 Aligned_cols=266 Identities=12% Similarity=0.039 Sum_probs=205.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (343)
........-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+...+=.++++.-+. .+.+|-++.-.|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHH
Confidence 344445556777889999999999998874 445666666677888888888888887888886543 688899999999
Q ss_pred HhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc--CC-CCCHhhHHHHHHHHHccCChh
Q 044084 141 IEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ--GC-IPGQVTYASIINAYCRIGLYS 217 (343)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~p~~~~~~~ll~~~~~~~~~~ 217 (343)
.-.|+.++|++.|.+....+.. -...|-.+...|+-.|..++|+..+...-+. |. .| +--+.--|.+.++.+
T Consensus 323 l~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRTNNLK 397 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHhccHH
Confidence 9999999999999988765542 2347889999999999999999998887664 21 12 122333477889999
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC--CC----CchHHHHHHHHHHHhcccChhHHHh
Q 044084 218 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK--GC----EPNVWIYNSLMDMHGRAKNLRQLEK 291 (343)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~----~p~~~~~~~l~~~~~~~~~~~~a~~ 291 (343)
.|.+.|....... |.|+...+-+.-.....+.+.+|..+|+..... .+ ..-..+++.|..+|.+.+.+++|..
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999888864 667888888888888888999999999887621 11 1244567888889999999999887
Q ss_pred ---------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 044084 292 ---------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSK 336 (343)
Q Consensus 292 ---------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 336 (343)
+.++.-.|...|+++.|++.|.+.+- +.||..+...++..+..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 88888889999999999999998876 67888777667665443
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=5e-09 Score=86.06 Aligned_cols=224 Identities=15% Similarity=0.154 Sum_probs=169.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (343)
...+.-.|+.-.|...|+........+. ..|.-+...|...++.++....|+.....+.. |+.+|..-.....-.
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~----~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFN----SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLL 407 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccc----hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHH
Confidence 3445556888888888888877654433 44777888888999999999999988876543 667788777777888
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHH
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (343)
+++++|..-|++.++..+. +...|-.+.-+..+.++++++...|++....-+ .....|+.....+..+++++.|.+.|
T Consensus 408 ~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 8999999999998886643 667777777777788899999999999887644 55668898999999999999999999
Q ss_pred HHHHHcCCCCC---------HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHH
Q 044084 189 EQLISQGCIPG---------QVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVA 259 (343)
Q Consensus 189 ~~~~~~~~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (343)
+..++. .|+ +.+...++-.-. .+++..|..+++...+.+ +.....|..|...-.+.|+.++|+++|+
T Consensus 486 D~ai~L--E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 486 DKAIEL--EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHhh--ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 988765 222 111122222212 378889999999888876 3356688889999999999999999998
Q ss_pred HHhh
Q 044084 260 KMKP 263 (343)
Q Consensus 260 ~m~~ 263 (343)
+...
T Consensus 562 ksa~ 565 (606)
T KOG0547|consen 562 KSAQ 565 (606)
T ss_pred HHHH
Confidence 8654
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.6e-07 Score=75.91 Aligned_cols=287 Identities=10% Similarity=0.031 Sum_probs=146.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
++.....+.+.+...|+.++|...|++....++ .+........-.+.+.|+.+....+...+.... +.+...|-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp----y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP----DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh----hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 444455555555555555555555555543321 111222222223334455555555444444331 112222333
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (343)
-.......+++..|+.+-++.++.... +...+-.-...+...+++++|.-.|+......+ -+...|.-++.+|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhch
Confidence 333334445556666655555554322 344444444556666666666666666554432 344566666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHH-HHHH-ccCChhHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHccCChHHHHHH
Q 044084 181 YWAAVKVYEQLISQGCIPGQVTYASII-NAYC-RIGLYSKAEKVFIEMQQKGFDKC-VVAYSSMVAMYGKTGRIRDAMRL 257 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 257 (343)
+.+|.-+-++..+. ++-+..+.+.+. ..+. ....-++|.++++.-.+.. |+ ....+.+...+...|+.+.+..+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHH
Confidence 66666655554433 122333433331 1111 1223355666666555432 32 34555666677777777777777
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 044084 258 VAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK-YTTVISAYNMAREFDMCVKFYNEFRMNGGVI 322 (343)
Q Consensus 258 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 322 (343)
+++.... .||....+.|.+.+...+.+++|.. |.. ++...-+-+.+.+=++.|.+..-.|
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~---ALr~dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYK---ALRQDPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHH---HHhcCccchHHHHHHHHHHhccCCC
Confidence 7776654 6777777777777776666666655 222 2223334445555555555443333
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=1.3e-07 Score=79.88 Aligned_cols=203 Identities=8% Similarity=-0.078 Sum_probs=136.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH-
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS- 100 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 100 (343)
...|..+...+...|+.+.+.+.+....+..... .+...........+...|++++|.+.+++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR-ATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 3456777777778888888888887776654422 1222333344556677899999999999988763 223334432
Q ss_pred --HHHHHhcccCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc
Q 044084 101 --LICSFASIAEVKVAEELFKEAEEKGMLR-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177 (343)
Q Consensus 101 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (343)
........+..+.+.+.+... ....| .......+...+...|++++|.+.+++..+..+ .+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence 111222344555555555541 11223 344555677788899999999999999988765 455677888888999
Q ss_pred CCcHHHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 178 RRAYWAAVKVYEQLISQGC-IPGQ--VTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
.|++++|...+++...... .|+. ..|..+...+...|++++|..+++.....
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999999999998876532 1232 23456777888999999999999998644
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=7.7e-07 Score=75.13 Aligned_cols=229 Identities=14% Similarity=0.041 Sum_probs=145.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHH---HHHHhhccCcHHHHHHHHHHHHhcCCCCCh-HhHHHHHHH
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKI---LCDSLGKSGRAFEILKFFRDMKEKGILEDP-SVYASLICS 104 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 104 (343)
...+...|++++|.+.+++..+..+ .+...+.. ........+....+.+.+.. .....|+. .....+...
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P----~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYP----RDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC----CcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHH
Confidence 4456788999999999999877642 22344442 22222234555555555554 11223332 334455567
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC-Cch--hhHHHHHHHHhcCCcH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN-ISD--CISCVIVNGFSKRRAY 181 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~ 181 (343)
+...|++++|...+++..+..+. +...+..+...+...|++++|...+++....... ++. ..|..+...+...|++
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 88999999999999999997643 6788889999999999999999999998765432 222 2355688889999999
Q ss_pred HHHHHHHHHHHHcCC-CCCHhhH-H--HHHHHHHccCChhHHHHH--HHHHHHcCCCcCh--hhHHHHHHHHHccCChHH
Q 044084 182 WAAVKVYEQLISQGC-IPGQVTY-A--SIINAYCRIGLYSKAEKV--FIEMQQKGFDKCV--VAYSSMVAMYGKTGRIRD 253 (343)
Q Consensus 182 ~~a~~~~~~~~~~~~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~--~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 253 (343)
++|..++++...... .+..... + .++.-+...|..+.+.+. +........+... ........++...|+.+.
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence 999999999864422 1222111 1 223333444544433333 2111111111111 222356677888999999
Q ss_pred HHHHHHHHhhC
Q 044084 254 AMRLVAKMKPK 264 (343)
Q Consensus 254 a~~~~~~m~~~ 264 (343)
|..+++.+...
T Consensus 283 a~~~L~~l~~~ 293 (355)
T cd05804 283 LDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 75
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=1.8e-06 Score=71.37 Aligned_cols=152 Identities=11% Similarity=0.046 Sum_probs=119.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHH
Q 044084 34 KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKV 113 (343)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (343)
..+++..|..+|+....... .+...|...+.+=.++.....|..++++....=+..| ..|-..+..=-..|++..
T Consensus 85 sq~e~~RARSv~ERALdvd~----r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY----RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHH
Confidence 34556788889988866542 2357888889999999999999999999887522222 234445555567799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 114 AEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 114 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
|.++|++-.+ ..|+...|++.++.=.+-+.++.|..+|++..-.. |++.+|--....-.++|....+..+|....+
T Consensus 160 aRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 160 ARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999887 46999999999999999999999999999987654 7777887777777788888888888877665
Q ss_pred c
Q 044084 194 Q 194 (343)
Q Consensus 194 ~ 194 (343)
.
T Consensus 236 ~ 236 (677)
T KOG1915|consen 236 F 236 (677)
T ss_pred H
Confidence 4
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=9.7e-07 Score=71.57 Aligned_cols=292 Identities=11% Similarity=0.037 Sum_probs=198.9
Q ss_pred CCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCCh
Q 044084 18 IVLDSGCYCQIMEAFYKI--GDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDP 95 (343)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (343)
++|...+....+.+++.. ++-..+..++-.+.....- +.+......+...+...|+.++|+..|++....+ |+.
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~l--r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~ 265 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTL--RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDN 265 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccC--CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhh
Confidence 344444444555555544 4444555555444444333 3346788899999999999999999999987653 332
Q ss_pred -HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 044084 96 -SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG 174 (343)
Q Consensus 96 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (343)
.......-.+.+.|+.+....+...+....- -+...|..-+.......+++.|+.+-++..+.+. -+...|-.-...
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~l 343 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRL 343 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHH
Confidence 2233333445677888888888777765421 2344455555566677889999999999887664 344455555567
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHH-HHHHc-cCChH
Q 044084 175 FSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV-AMYGK-TGRIR 252 (343)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~ 252 (343)
+...+++++|.-.|+...... +-+...|.-++.+|...|++.+|..+-+...+. ++.+..+.+.+. ..+.. ...-+
T Consensus 344 L~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 788899999999999988763 356789999999999999999998877776654 234555555552 33322 23347
Q ss_pred HHHHHHHHHhhCCCCchH-HHHHHHHHHHhcccChhHHHh--------------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 253 DAMRLVAKMKPKGCEPNV-WIYNSLMDMHGRAKNLRQLEK--------------YTTVISAYNMAREFDMCVKFYNEFRM 317 (343)
Q Consensus 253 ~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~--------------~~~l~~~~~~~g~~~~a~~~~~~m~~ 317 (343)
+|..++++-... .|+- ...+.+...|...|....+.. .+.+.+.+...+.+++|++.|...+.
T Consensus 422 KAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 422 KAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888888887764 5553 344556667777777776665 67778888888888899988888877
Q ss_pred CC
Q 044084 318 NG 319 (343)
Q Consensus 318 ~~ 319 (343)
.+
T Consensus 500 ~d 501 (564)
T KOG1174|consen 500 QD 501 (564)
T ss_pred cC
Confidence 54
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=4.3e-06 Score=70.87 Aligned_cols=321 Identities=10% Similarity=0.069 Sum_probs=174.0
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHH-HHHHHHhhccCcHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMY-KILCDSLGKSGRAFEIL 80 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~ 80 (343)
++++|++...++...+ +.+...+.+=+-+..+.+.+++|+.+.+.-... ... ..| ---..+..+.+..++|+
T Consensus 27 e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~----~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVI----NSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhc----chhhHHHHHHHHHcccHHHHH
Confidence 4678888888888765 345566777777888888888888665432210 000 011 11122334566677776
Q ss_pred HHHHHHHhcCCCCC-hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC---------------------------CCHHH
Q 044084 81 KFFRDMKEKGILED-PSVYASLICSFASIAEVKVAEELFKEAEEKGML---------------------------RDLEV 132 (343)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~ 132 (343)
..++ |..++ ..+...-...+.+.+++++|..+|+.+.+++.+ ....+
T Consensus 100 k~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 100 KTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 6666 22222 224444455566777777777777766543321 00112
Q ss_pred HHH---HHHHHHhcCcHhHHHHHHHHHHhc--------CCC-----Cchh-hHHHHHHHHhcCCcHHHHHHHHHHHHHcC
Q 044084 133 FLK---LVLMYIEEGMVEKTLEVVESMKNA--------ELN-----ISDC-ISCVIVNGFSKRRAYWAAVKVYEQLISQG 195 (343)
Q Consensus 133 ~~~---l~~~~~~~~~~~~a~~~~~~~~~~--------~~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (343)
|.. ....+...|++.+|+++++...+. +.. .... .-.-+...+-..|+.++|..++....+.+
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 222 223345567777777777766211 100 0000 01123334445677777777777666553
Q ss_pred CCCCHhh-------------------------------------------------------------------------
Q 044084 196 CIPGQVT------------------------------------------------------------------------- 202 (343)
Q Consensus 196 ~~p~~~~------------------------------------------------------------------------- 202 (343)
.+|...
T Consensus 255 -~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 255 -PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred -CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 222211
Q ss_pred --------HHHHHHHHHc--cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHH--------HHhhC
Q 044084 203 --------YASIINAYCR--IGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVA--------KMKPK 264 (343)
Q Consensus 203 --------~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~m~~~ 264 (343)
+.+++..+.+ .....++..++...-+....-...+.-.++......|+++.|.+++. .+.+.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 1111111100 01122233333332222211113345566677788999999999998 55555
Q ss_pred CCCchHHHHHHHHHHHhcccChhHHHh----------------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 044084 265 GCEPNVWIYNSLMDMHGRAKNLRQLEK----------------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVI 322 (343)
Q Consensus 265 ~~~p~~~~~~~l~~~~~~~~~~~~a~~----------------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 322 (343)
+..|-.+ ..+...+.+.++.+.|.. +..+...-.+.|.-++|..+++++.+.+ ++
T Consensus 414 ~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~ 490 (652)
T KOG2376|consen 414 KHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PN 490 (652)
T ss_pred ccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-Cc
Confidence 5555443 444445555555443333 4445555567899999999999999864 57
Q ss_pred cHHHHHHHHHHHhccc
Q 044084 323 DRAMAGIMVGVFSKLS 338 (343)
Q Consensus 323 ~~~~~~~l~~~~~~~g 338 (343)
|..+...++.+|++..
T Consensus 491 d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARLD 506 (652)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 8888889999988753
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=7.9e-07 Score=70.69 Aligned_cols=319 Identities=11% Similarity=0.109 Sum_probs=183.2
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
|+.-|..+++.-...+-.-...+-..+..++.+.|++++|...+.-+....-.| ...+..|..++.-.|.+.+|..
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~----~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAP----AELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCC----cccchhHHHHHHHHHHHHHHHH
Confidence 456677777766654433222334445667788999999999998877654333 3677778877778888888877
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL 161 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (343)
+-....+ ++-.-..++....+.++-++.....+.+.+. ..---+|.....-...+.+|++++.++...+
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 7654322 3334455666667778877777766666542 1222334444333445789999999988655
Q ss_pred CCchhhHHH-HHHHHhcCCcHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHc--cCChhHHH--H----------HHHH
Q 044084 162 NISDCISCV-IVNGFSKRRAYWAAVKVYEQLISQGCIPGQ-VTYASIINAYCR--IGLYSKAE--K----------VFIE 225 (343)
Q Consensus 162 ~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~--~~~~~~a~--~----------~~~~ 225 (343)
|.-...|. +.-+|.+..-++-+.++++--.+. .||. ...|....-..+ .|+..+.+ . ..+.
T Consensus 182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 33334443 345677788888888888877765 3443 222222222111 12211111 0 1111
Q ss_pred HHHcCC------------CcC-----hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHH-Hhc----c
Q 044084 226 MQQKGF------------DKC-----VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDM-HGR----A 283 (343)
Q Consensus 226 ~~~~~~------------~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~----~ 283 (343)
+.++++ -|. +..--.|+-.|.+.++..+|..+.+++... .|-......+..+ +.+ .
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcH
Confidence 222110 010 223334566788999999999888776532 3333333222221 111 1
Q ss_pred cChhHHHh---------------------------------------------------HHHHHHHHHhcCCHHHHHHHH
Q 044084 284 KNLRQLEK---------------------------------------------------YTTVISAYNMAREFDMCVKFY 312 (343)
Q Consensus 284 ~~~~~a~~---------------------------------------------------~~~l~~~~~~~g~~~~a~~~~ 312 (343)
....-|.+ --.+..+++..|.+.+|.++|
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 11111211 234667788889999999998
Q ss_pred HHHHhCCCCccHHHH-HHHHHHHhcccccc
Q 044084 313 NEFRMNGGVIDRAMA-GIMVGVFSKLSQIE 341 (343)
Q Consensus 313 ~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~ 341 (343)
-+.....++ |..+| ..|.++|.++++.+
T Consensus 417 ~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 417 IRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred hhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 877655554 44555 55666888887765
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=2.7e-06 Score=72.82 Aligned_cols=226 Identities=11% Similarity=0.052 Sum_probs=148.1
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHH
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFF 83 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 83 (343)
...+.+.+.+.+ +.+-...+.....-.+...|+.++|......-.+.+ +.+...|+.+.-.+....++++|++.|
T Consensus 24 kkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d----~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 24 KKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND----LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC----cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 344555555555 333455666666666777888888888776654433 444588888888888888899999999
Q ss_pred HHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC-CC
Q 044084 84 RDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE-LN 162 (343)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 162 (343)
+.....+. -|...+.-+.-.-++.++++.......++.+..+. ....|..+..++.-.|+...|..+++...+.. ..
T Consensus 99 ~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 98887643 35666766666667778888887777777765432 56678888888888888889988888877654 23
Q ss_pred CchhhHHHHH------HHHhcCCcHHHHHHHHHHHHHcCCCCCHhhH-HHHHHHHHccCChhHHHHHHHHHHHcCCCcCh
Q 044084 163 ISDCISCVIV------NGFSKRRAYWAAVKVYEQLISQGCIPGQVTY-ASIINAYCRIGLYSKAEKVFIEMQQKGFDKCV 235 (343)
Q Consensus 163 ~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (343)
|+...+.... ......|.++.|.+.+..-... ..|...+ ..-...+.+.+++++|..++..+.... ||.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 5554444322 2344566677776666554433 1222222 233455667788888888888877764 554
Q ss_pred hhHHH
Q 044084 236 VAYSS 240 (343)
Q Consensus 236 ~~~~~ 240 (343)
..|+.
T Consensus 253 ~~Yy~ 257 (700)
T KOG1156|consen 253 LDYYE 257 (700)
T ss_pred HHHHH
Confidence 44443
No 80
>PLN02789 farnesyltranstransferase
Probab=99.04 E-value=1e-06 Score=71.94 Aligned_cols=215 Identities=10% Similarity=0.037 Sum_probs=155.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccC-cHHHHHHHHHHHHhcCCCCChHhHHHHH
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSG-RAFEILKFFRDMKEKGILEDPSVYASLI 102 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (343)
++..+-..+...+..++|+.+.+++.+.+ |.+..+|+.....+...| ++++++..++++.+.+.+ +..+|+...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln----P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN----PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHH
Confidence 34455556677789999999999998765 344577887777777777 579999999999887544 555676655
Q ss_pred HHHhcccC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC--
Q 044084 103 CSFASIAE--VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR-- 178 (343)
Q Consensus 103 ~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 178 (343)
..+.+.|+ .+.+...++.+.+...+ +..+|+.....+...|+++++++.++++.+.++ -+..+|+.....+.+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccc
Confidence 55555565 36778888888887764 899999999999999999999999999998887 4666777665555443
Q ss_pred -Cc----HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc----CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHc
Q 044084 179 -RA----YWAAVKVYEQLISQGCIPGQVTYASIINAYCRI----GLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 247 (343)
Q Consensus 179 -~~----~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (343)
|. .++..+...++.... +-+...|+-+...+... +...+|...+.+..+.+ +.+......|++.|+.
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 246677776666653 44567787777777663 34466888888776654 4456778888888875
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=6.6e-06 Score=70.55 Aligned_cols=327 Identities=14% Similarity=0.146 Sum_probs=194.2
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKF 82 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 82 (343)
.++|......-.+.++ .+...|+.+.-.+....++++|.+.|......+ +.+...|.-+.-.-++.++++.....
T Consensus 57 ~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~----~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE----KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred hHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4567777766666554 477788888888888889999999998886644 44467777776667778888888777
Q ss_pred HHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCC-CCCHHHHHHHH------HHHHhcCcHhHHHHHHHH
Q 044084 83 FRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM-LRDLEVFLKLV------LMYIEEGMVEKTLEVVES 155 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~ 155 (343)
..++.+.. +.....|..+..++.-.|+...|..+++...+... .|+...+.... ....+.|..++|.+.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 77777652 22345677777777778888888888888776542 35555544332 234556777777777665
Q ss_pred HHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHH-HHHccCChhHHH-HHHHH--------
Q 044084 156 MKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIIN-AYCRIGLYSKAE-KVFIE-------- 225 (343)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~-~~~~~-------- 225 (343)
....-+ .....-..-...+.+.+++++|..++..+... .||...|...+. ++.+..+.-++. .+|..
T Consensus 211 ~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 211 NEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 543221 11112233445667778888888888888877 466665554433 332222222222 33333
Q ss_pred --------------------------HHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHh----hCCC---------
Q 044084 226 --------------------------MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMK----PKGC--------- 266 (343)
Q Consensus 226 --------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~--------- 266 (343)
+.+.|+++ ++..+...|-.-...+-..++...+. ..|.
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 33333322 22233332222111111111111111 1111
Q ss_pred -CchH--HHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHH
Q 044084 267 -EPNV--WIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAG 328 (343)
Q Consensus 267 -~p~~--~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 328 (343)
+|.. .|+..+++.+-+.|+++.|.. |..-.+.+...|++++|..++++.++.+. ||...-+
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INs 443 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINS 443 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHH
Confidence 3444 344567778888999988887 55556778889999999999999887653 4555433
Q ss_pred HHHHHHhccccccc
Q 044084 329 IMVGVFSKLSQIEE 342 (343)
Q Consensus 329 ~l~~~~~~~g~~~~ 342 (343)
--..-..+..+.++
T Consensus 444 KcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 444 KCAKYMLRANEIEE 457 (700)
T ss_pred HHHHHHHHccccHH
Confidence 33444444444443
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=2.8e-08 Score=79.94 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=57.5
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCC
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR----IGL 215 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~ 215 (343)
+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.. +..+...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchh
Confidence 33445555555544322 122233344445555555555555555554431 12222223333221 223
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccCh
Q 044084 216 YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286 (343)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 286 (343)
+.+|..+|+++.+. +++++.+.+.+..++...|++++|.+++.+..+.+. -++.+...++-+....|+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCC
Confidence 55555555554433 234445555555555555555555555555444321 1334444444444444444
No 83
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.03 E-value=6e-07 Score=82.94 Aligned_cols=224 Identities=11% Similarity=0.082 Sum_probs=178.4
Q ss_pred CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCC-----ChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHH
Q 044084 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILE-----DPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLE 131 (343)
Q Consensus 57 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (343)
|.+...|...|..+.+.++.+.|.++.++.+.. +.+ -...|.++++.-..-|.-+...++|+++.+.. -...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 444678999999999999999999999998764 222 23457778877777788899999999999864 2366
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCC---HhhHHHHHH
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPG---QVTYASIIN 208 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~ 208 (343)
+|..|...|.+.+.+++|.++++.|.+.-- .....|...+..+.++.+-+.|..++.+..+. -|. .....-.+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 789999999999999999999999987543 45568999999999999999999999998876 344 223344445
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchH--HHHHHHHHHHhcccCh
Q 044084 209 AYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNV--WIYNSLMDMHGRAKNL 286 (343)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~ 286 (343)
.-.+.|+.+.+..+|+...... |.-...|+.+|+.-.++|+.+.++.+|++....++.|-. ..|...+..=.+.|+-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 5567899999999999998875 556789999999999999999999999999999887754 3455555544444443
Q ss_pred h
Q 044084 287 R 287 (343)
Q Consensus 287 ~ 287 (343)
.
T Consensus 1688 ~ 1688 (1710)
T KOG1070|consen 1688 K 1688 (1710)
T ss_pred h
Confidence 3
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=6e-06 Score=72.15 Aligned_cols=323 Identities=11% Similarity=0.044 Sum_probs=181.8
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCC
Q 044084 13 MKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGIL 92 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 92 (343)
+....+.-|...|..|.-+....|+++.+-+.|++...--... .+.|..+...+.-.|.-..|..+++.-......
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~----~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGE----HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----HHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 3333455688889999999999999999999998875543322 477888888888888888888888776554323
Q ss_pred CCh-HhHHHHHHHHh-cccCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhc-----------CcHhHHHHHHHH
Q 044084 93 EDP-SVYASLICSFA-SIAEVKVAEELFKEAEEK--GM--LRDLEVFLKLVLMYIEE-----------GMVEKTLEVVES 155 (343)
Q Consensus 93 ~~~-~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~ 155 (343)
|+. ..+-..-..|. +.+..++++..-.++... +. ...+..|..+.-+|... ....++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 433 33332233333 335555555555554441 10 11233444444444321 113455555565
Q ss_pred HHhcCC-CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc-CC--
Q 044084 156 MKNAEL-NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK-GF-- 231 (343)
Q Consensus 156 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-- 231 (343)
..+.+. .|+...| +.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |.
T Consensus 470 av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred HHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 555443 1222222 22223445566666666666665544455555555555555555555555554443321 10
Q ss_pred --------------------------------------------------------------------------------
Q 044084 232 -------------------------------------------------------------------------------- 231 (343)
Q Consensus 232 -------------------------------------------------------------------------------- 231 (343)
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence
Q ss_pred -----------C--cC------hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh-
Q 044084 232 -----------D--KC------VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK- 291 (343)
Q Consensus 232 -----------~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~- 291 (343)
. |+ ...|......+.+.+..++|...+.+.... ..-....|......+...|.+.+|.+
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 0 00 112223333444444444444444444332 12233344444445555666666655
Q ss_pred --------------HHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 292 --------------YTTVISAYNMAREFDMCVK--FYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 292 --------------~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
...+...+.+.|+..-|.. ++.++.+.+. -++..|..+..++.+.|+.++|
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHH
Confidence 6777888888888777777 8888888664 3667788888899888887754
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=3.6e-07 Score=70.84 Aligned_cols=168 Identities=11% Similarity=0.048 Sum_probs=85.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHH
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASL 101 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (343)
..-+++.+..+.+-.+++.|.+++..-.++. |.+....+.|..+|....++..|-+.++++-.. .|...-|...
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~----p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY 83 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS----PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY 83 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 3345666666667777777777766655544 223456666677777777777777777766553 3333333221
Q ss_pred -HHHHhcccCHHHHHHHHHHHHHcC------------------------------C-CCCHHHHHHHHHHHHhcCcHhHH
Q 044084 102 -ICSFASIAEVKVAEELFKEAEEKG------------------------------M-LRDLEVFLKLVLMYIEEGMVEKT 149 (343)
Q Consensus 102 -~~~~~~~~~~~~a~~~~~~~~~~~------------------------------~-~~~~~~~~~l~~~~~~~~~~~~a 149 (343)
...+.+.+.+..|+.+...|.+.. + +-+..+.+...-...+.|+++.|
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 123334444555555544443210 0 01222333333334455666666
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCC
Q 044084 150 LEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGC 196 (343)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 196 (343)
.+-|+...+.+--.+...|+.-+. ..+.|+++.|++...++.+.|+
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 666665544332223334543332 3345566666666666665553
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=2.9e-08 Score=79.83 Aligned_cols=226 Identities=13% Similarity=0.161 Sum_probs=151.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCC-ChHhHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILE-DPSVYA 99 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 99 (343)
+......+.+++...|+++.++. ++.... .|. ......+...+...++-+.++.-+++.......+ +.....
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~---l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~ 106 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPE---LQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQL 106 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCC---CHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHH---HhccCC-Chh---HHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHH
Confidence 34456677788899998776543 333322 222 4555555555544455666666665554443332 333333
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHh---
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFS--- 176 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 176 (343)
.....+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHH
Confidence 3335677889999999988642 367788888999999999999999999998764 23 33444444433
Q ss_pred -cCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCCh-HHH
Q 044084 177 -KRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI-RDA 254 (343)
Q Consensus 177 -~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a 254 (343)
..+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|+.++.+..+.+ +-++.+...++.+....|+. +.+
T Consensus 178 ~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred hCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHH
Confidence 345789999999998765 56788889999999999999999999999987665 44667777788888888887 667
Q ss_pred HHHHHHHhhC
Q 044084 255 MRLVAKMKPK 264 (343)
Q Consensus 255 ~~~~~~m~~~ 264 (343)
.+.+.++...
T Consensus 256 ~~~l~qL~~~ 265 (290)
T PF04733_consen 256 ERYLSQLKQS 265 (290)
T ss_dssp HHHHHHCHHH
T ss_pred HHHHHHHHHh
Confidence 7888888864
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.5e-06 Score=71.47 Aligned_cols=322 Identities=13% Similarity=0.078 Sum_probs=209.3
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
|++.|+..|.+.+...+ ++...|..-..+|+..|++++|++=-.+..+.++.. ...|+....++.-.|++++|+.
T Consensus 17 d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w----~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW----AKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred cHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch----hhHHHHhHHHHHhcccHHHHHH
Confidence 67899999999998765 488889999999999999999998776666655444 3689999999999999999999
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcc---c---------------------------------------------CHHH
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASI---A---------------------------------------------EVKV 113 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---~---------------------------------------------~~~~ 113 (343)
.|.+-++... .+...++-+..++... + +.+.
T Consensus 92 ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 9988776531 2333444444433111 0 0000
Q ss_pred HHHHHHHHHH--------cC-------CCC------------C----------HHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 044084 114 AEELFKEAEE--------KG-------MLR------------D----------LEVFLKLVLMYIEEGMVEKTLEVVESM 156 (343)
Q Consensus 114 a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (343)
..+..-.+.. .+ ..| | ..-...+.+...+..+++.|++.+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 0000000000 00 001 0 011334556666666777777777777
Q ss_pred HhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhH-------HHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 157 KNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTY-------ASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-------~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
.... -+..-++....+|...|.+..+...-....+.|. -...-| ..+..+|.+.++++.+...|.+....
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 6655 3444456666777777777766666555555442 111122 22344666678888888888876654
Q ss_pred CCCcChhhH-------------------------HHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhccc
Q 044084 230 GFDKCVVAY-------------------------SSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK 284 (343)
Q Consensus 230 ~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 284 (343)
...|+...- ..=...+.+.|++..|...|.+++... +-|...|..-.-+|.+.|
T Consensus 328 ~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 328 HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG 406 (539)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh
Confidence 433332111 111345678899999999999999885 447788999999999999
Q ss_pred ChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccc
Q 044084 285 NLRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLS 338 (343)
Q Consensus 285 ~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 338 (343)
.+..|.. |..-..++....+++.|.+.|++.++.+ |+..- +++.|.+|.
T Consensus 407 ~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e---~~~~~~rc~ 470 (539)
T KOG0548|consen 407 EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAE---AIDGYRRCV 470 (539)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHH---HHHHHHHHH
Confidence 9998877 5555666666778899999999888754 55554 445555544
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=8.1e-07 Score=74.90 Aligned_cols=250 Identities=10% Similarity=0.031 Sum_probs=161.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (343)
...+.+.|++.+|.-.|+...+++ |....+|..|.......++-..|+..+++..+.... |....-.|.-.|...
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd----P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD----PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC----hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhh
Confidence 345667788888888888776665 445688888888888888888888888888776422 566666777777777
Q ss_pred cCHHHHHHHHHHHHHcCCCC--------CHHHHHHHHHHHHhcCcHhHHHHHHHHHH-hcCCCCchhhHHHHHHHHhcCC
Q 044084 109 AEVKVAEELFKEAEEKGMLR--------DLEVFLKLVLMYIEEGMVEKTLEVVESMK-NAELNISDCISCVIVNGFSKRR 179 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 179 (343)
|.-..|...++.-+...++- +...-.. ..+.....+....++|-.+. +.+..+|......|--.|...|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 87777877777765533210 0000000 12222233444455555543 3443466667777777777888
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHccCChHHHHHHH
Q 044084 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC-VVAYSSMVAMYGKTGRIRDAMRLV 258 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 258 (343)
++++|.+-|+...... +-|...||.|...++...+.++|...|.+.++.. |+ +.+...|.-+|...|.+++|...|
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 8888888888877763 3456678888888888888888888888887753 43 456666777778888888887777
Q ss_pred HHHhhC---------CCCchHHHHHHHHHHHhcccChhH
Q 044084 259 AKMKPK---------GCEPNVWIYNSLMDMHGRAKNLRQ 288 (343)
Q Consensus 259 ~~m~~~---------~~~p~~~~~~~l~~~~~~~~~~~~ 288 (343)
-..+.. +..++...|..|=.++.-.++.+.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 655421 122344556555555555555553
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=1.5e-05 Score=76.02 Aligned_cols=294 Identities=10% Similarity=-0.018 Sum_probs=170.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CCc-hHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCCh----H
Q 044084 26 CQIMEAFYKIGDSEKVAALFLECESRKLDL----TPS-STHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDP----S 96 (343)
Q Consensus 26 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 96 (343)
......+...|+++++...+......-... ++. .......+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 344455567788888888887765431110 100 1122223344556788899998888887653111121 2
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc----CCC--C-c
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKGML---R--DLEVFLKLVLMYIEEGMVEKTLEVVESMKNA----ELN--I-S 164 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 164 (343)
..+.+...+...|+++.|...+.+....... + ...+...+...+...|+++.|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3344555667788898888888777642111 1 1234556667778889999988888775432 211 1 1
Q ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHc--CCCC--CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc-ChhhH-
Q 044084 165 DCISCVIVNGFSKRRAYWAAVKVYEQLISQ--GCIP--GQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK-CVVAY- 238 (343)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~- 238 (343)
...+..+...+...|++++|...+++.... ...+ ....+..+...+...|++++|...+.......-.. ....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 223444555666778999988888876543 1112 12334445566777888888888887775431000 01111
Q ss_pred ----HHHHHHHHccCChHHHHHHHHHHhhCCCCch---HHHHHHHHHHHhcccChhHHHh--------------------
Q 044084 239 ----SSMVAMYGKTGRIRDAMRLVAKMKPKGCEPN---VWIYNSLMDMHGRAKNLRQLEK-------------------- 291 (343)
Q Consensus 239 ----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~-------------------- 291 (343)
...+..+...|+.+.|..++........... ...+..+..++...|+.++|..
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1122344557788888888766554211111 1113445556777777777655
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044084 292 -YTTVISAYNMAREFDMCVKFYNEFRMNG 319 (343)
Q Consensus 292 -~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 319 (343)
...+..++.+.|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3444566778888888888888876643
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=1.1e-06 Score=69.46 Aligned_cols=188 Identities=17% Similarity=0.061 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCCh--HhHH
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDP--SVYA 99 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 99 (343)
...+..+...+.+.|++++|...|+++....... +....++..+..++...|++++|+..++++.+....... .++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFS-PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3455666667777777777777777776544221 112245666777777777777777777777665321111 1233
Q ss_pred HHHHHHhcc--------cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHH
Q 044084 100 SLICSFASI--------AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVI 171 (343)
Q Consensus 100 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (343)
.+..++... |+.+.|.+.++.+.+..+. +...+..+..... ... ... .....+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHHHH
Confidence 333344333 5667777777777665432 2222221111100 000 000 011245
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 172 VNGFSKRRAYWAAVKVYEQLISQGC--IPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
...+...|++.+|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667888999999999998887621 123467778888899999999999988887765
No 91
>PF12854 PPR_1: PPR repeat
Probab=98.90 E-value=2.5e-09 Score=55.29 Aligned_cols=32 Identities=34% Similarity=0.672 Sum_probs=16.2
Q ss_pred CCCcChhhHHHHHHHHHccCChHHHHHHHHHH
Q 044084 230 GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM 261 (343)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 261 (343)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555444
No 92
>PF12854 PPR_1: PPR repeat
Probab=98.89 E-value=2.4e-09 Score=55.39 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=29.0
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 16 AGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECE 49 (343)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 49 (343)
+|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4778888899999999999999999988888873
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.4e-06 Score=73.52 Aligned_cols=217 Identities=13% Similarity=0.101 Sum_probs=146.7
Q ss_pred HHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHh
Q 044084 68 DSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVE 147 (343)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (343)
.-+.+.|++.+|.-.|+.....++. +...|..|.......++-..|+..+.+..+..+. +..+.-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 3455777788888888877776433 5677888877777888888888888888876543 6777778888888888888
Q ss_pred HHHHHHHHHHhcCCC--------CchhhHHHHHHHHhcCCcHHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHHccCChhH
Q 044084 148 KTLEVVESMKNAELN--------ISDCISCVIVNGFSKRRAYWAAVKVYEQLIS-QGCIPGQVTYASIINAYCRIGLYSK 218 (343)
Q Consensus 148 ~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~ 218 (343)
.|...++......++ ++...-.. ..+.....+....++|-++.. .+..+|......|--.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888776443210 01110000 222333344455555555443 3434666666666666777788888
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchH-HHHHHHHHHHhcccChhHHHh
Q 044084 219 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNV-WIYNSLMDMHGRAKNLRQLEK 291 (343)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~ 291 (343)
|..-|+..+... |-|..+||.|...++...+.++|+..|++.++. +|+- .+...|.-+|...|.+++|..
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 888888888765 456778888888888888888888888888875 5553 345556667788888888776
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=1.2e-06 Score=69.34 Aligned_cols=186 Identities=13% Similarity=0.016 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCC-CC-hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCH--HHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGIL-ED-PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL--EVFLK 135 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 135 (343)
...+..+...+...|+++.|...|+++...... |. ..++..+..++...|++++|...++++.+..+.... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 567777888888888898888888888775321 11 135566777888888888888888888876543111 24555
Q ss_pred HHHHHHhc--------CcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 044084 136 LVLMYIEE--------GMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASII 207 (343)
Q Consensus 136 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 207 (343)
+..++... |++++|.+.|+.+....+. +...+..+..... .. .... .....+.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~--------~~~~~~a 173 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA--------GKELYVA 173 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH--------HHHHHHH
Confidence 55666554 6677788888877765532 2222222211100 00 0000 0112455
Q ss_pred HHHHccCChhHHHHHHHHHHHcCC--CcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 208 NAYCRIGLYSKAEKVFIEMQQKGF--DKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
..+.+.|++++|...++...+... +.....+..+..++...|++++|...++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 668888999999999999887631 223567888899999999999999988887754
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=7.4e-06 Score=76.13 Aligned_cols=246 Identities=11% Similarity=0.053 Sum_probs=187.6
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 044084 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESR-KLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKE 88 (343)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 88 (343)
|+++.... |-+...|...|....+.++.++|.++++++... ++.-...-...|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444432 235567999999999999999999999998654 2222222246788888888888888899999999987
Q ss_pred cCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC-chhh
Q 044084 89 KGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNI-SDCI 167 (343)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 167 (343)
.. . ....|..|...|.+..++++|.++++.|.+.-- -...+|...+..+.+.++-+.|..++.+..+.-++- ....
T Consensus 1526 yc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 53 1 234588899999999999999999999998533 478899999999999999999999999987653321 1223
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHH
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC--VVAYSSMVAMY 245 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 245 (343)
..-.+..-.+.|+.+++..+|+.....- +--...|+..+..=.+.|+.+.++.+|+++...++.|- -..|...+..-
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 4455666678999999999999998773 33557899999999999999999999999999887664 34566666666
Q ss_pred HccCChHHHHHHHHH
Q 044084 246 GKTGRIRDAMRLVAK 260 (343)
Q Consensus 246 ~~~~~~~~a~~~~~~ 260 (343)
-..|+-..+..+=.+
T Consensus 1682 k~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HhcCchhhHHHHHHH
Confidence 666765555444333
No 96
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=1.4e-05 Score=65.33 Aligned_cols=258 Identities=8% Similarity=0.058 Sum_probs=174.3
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhccc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIA-EVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
.++..+-..+...++.++|+.+.+++++.... +..+|+..-.++...| ++++++..++++.+..++ +..+|+.....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 44555555566677899999999999886322 3445666656666666 579999999999987765 67788877766
Q ss_pred HHhcCcH--hHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc---C
Q 044084 140 YIEEGMV--EKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI---G 214 (343)
Q Consensus 140 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~ 214 (343)
+.+.|+. ++++.+++++.+.+. -+..+|+.....+...|+++++++.++++.+.+ +-+...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccc
Confidence 7777763 678999999988876 577889988888889999999999999999886 34556666655555443 2
Q ss_pred Ch----hHHHHHHHHHHHcCCCcChhhHHHHHHHHHcc----CChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccCh
Q 044084 215 LY----SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT----GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286 (343)
Q Consensus 215 ~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 286 (343)
.. ++............ +-|...|+-+...+... ++..+|...+.+..+.+ ..+......|++.|+.....
T Consensus 194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQP 271 (320)
T ss_pred cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhcc
Confidence 22 45666666666654 55778888888888773 34566888888877653 23566777888887753211
Q ss_pred hHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCccHHHHH
Q 044084 287 RQLEKYTTVISAY-NMAREFDMCVKFYNEFRMNGGVIDRAMAG 328 (343)
Q Consensus 287 ~~a~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 328 (343)
. ......+.+. ......++|.++++.+. ...|=..-|.
T Consensus 272 ~--~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 272 T--AEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred c--hhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 0 0011111111 11224577888888883 3455444443
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=2.2e-06 Score=66.64 Aligned_cols=248 Identities=16% Similarity=0.161 Sum_probs=148.4
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHH
Q 044084 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFL-KLVLMYI 141 (343)
Q Consensus 63 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 141 (343)
+.+.+..+.+..++..|++++..-.+...+ +....+.|..+|....++..|-..++++.... |...-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 666777778889999999999988776422 67778889999999999999999999998765 3333332 2245666
Q ss_pred hcCcHhHHHHHHHHHHhcC-------------------C---------CC---chhhHHHHHHHHhcCCcHHHHHHHHHH
Q 044084 142 EEGMVEKTLEVVESMKNAE-------------------L---------NI---SDCISCVIVNGFSKRRAYWAAVKVYEQ 190 (343)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~-------------------~---------~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (343)
+.+.+.+|+++...|.... + .| +..+.+.......+.|+++.|.+-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 7788888888877765420 0 01 111111222223456777777777777
Q ss_pred HHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC-------------cCh---------------hhHHHHH
Q 044084 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFD-------------KCV---------------VAYSSMV 242 (343)
Q Consensus 191 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~---------------~~~~~l~ 242 (343)
..+-+---....|+..+..| +.|+.+.|.+...++.++|++ ||+ ..+|.-.
T Consensus 170 AlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 66653333345566555443 456777777777777776543 111 1222223
Q ss_pred HHHHccCChHHHHHHHHHHhhC-CCCchHHHHHHHHHHHhcccChhHHHh--------------HHHHHHHHHhcCCHHH
Q 044084 243 AMYGKTGRIRDAMRLVAKMKPK-GCEPNVWIYNSLMDMHGRAKNLRQLEK--------------YTTVISAYNMAREFDM 307 (343)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~--------------~~~l~~~~~~~g~~~~ 307 (343)
..+.+.|+++.|.+.+..|... ....|++|...+.-.-....-.+...+ |..++-.||+..-++.
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 3445667777777777776533 234456665544322111111111111 6666666777766666
Q ss_pred HHHHHHH
Q 044084 308 CVKFYNE 314 (343)
Q Consensus 308 a~~~~~~ 314 (343)
|-.++-+
T Consensus 329 AADvLAE 335 (459)
T KOG4340|consen 329 AADVLAE 335 (459)
T ss_pred HHHHHhh
Confidence 6666654
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=2.1e-06 Score=65.34 Aligned_cols=120 Identities=5% Similarity=-0.020 Sum_probs=68.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHH-hcCCc--HHHH
Q 044084 108 IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGF-SKRRA--YWAA 184 (343)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 184 (343)
.++.+++...++...+..+. +...|..+...|...|++++|...|++..+..+ .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44555555555555555432 566666666666666666666666666665554 3444555555542 44444 3666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 044084 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230 (343)
Q Consensus 185 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (343)
.+++++..+.. +-+...+..+...+.+.|++++|...|+.+.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666666553 2244455555555666666666666666666553
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=9.2e-07 Score=76.63 Aligned_cols=216 Identities=14% Similarity=0.097 Sum_probs=158.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHH
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLIC 103 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (343)
.-..+...+...|-...|..+|++. ..|..+|.+|...|+..+|..+..+..+. +||+..|..+.+
T Consensus 400 ~q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 3455677788889999999998774 56888889999999999999888887773 678888888877
Q ss_pred HHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHH
Q 044084 104 SFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183 (343)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (343)
.....--++.|.++.+..... .-..+.....+.++++++.+.|+.-...++ ....+|-.+-.+..+.+++..
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHH
Confidence 766665667777776654322 222233333446788888888887665554 445567777777778888888
Q ss_pred HHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHh
Q 044084 184 AVKVYEQLISQGCIPG-QVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 184 a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
|.+.|..-... .|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.
T Consensus 538 av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 538 AVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 88888887765 454 4678888888888888888888888888776 4456677777777788888888888888776
Q ss_pred hC
Q 044084 263 PK 264 (343)
Q Consensus 263 ~~ 264 (343)
+.
T Consensus 615 ~~ 616 (777)
T KOG1128|consen 615 DL 616 (777)
T ss_pred Hh
Confidence 53
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.80 E-value=7.8e-06 Score=74.69 Aligned_cols=239 Identities=8% Similarity=0.020 Sum_probs=142.3
Q ss_pred CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChH-hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044084 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPS-VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLK 135 (343)
Q Consensus 57 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (343)
|.+...|..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 344677788888888888888888888766654 34433 233333344444443333222 3
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 044084 136 LVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGL 215 (343)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 215 (343)
++.......++..+..+...+...+ -+...+-.+..+|-+.|+.+++..+|+++.+.. +-|..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 3334444444433344444444432 233356667777777788888888888877775 45566777777777777 7
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh-HHH
Q 044084 216 YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK-YTT 294 (343)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-~~~ 294 (343)
+++|.+++...... +...+++..+.++|.++..... -|...+..+.+.....-....+.. +..
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHREFTRLVGLLED 228 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhhccchhHHHHHH
Confidence 77777777666553 4555677777777777776521 133333444443333211222222 666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 044084 295 VISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFS 335 (343)
Q Consensus 295 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 335 (343)
+...|...+++++++.+++...+...+ |.....-++.+|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 667777888888899999888876543 4444555666665
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=4.2e-06 Score=63.71 Aligned_cols=119 Identities=12% Similarity=0.136 Sum_probs=71.3
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCc--HhHH
Q 044084 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM-YIEEGM--VEKT 149 (343)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a 149 (343)
.++.+++...++...+.+ +.|...|..+...|...|+++.|...+++..+..+. +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555665565555543 235556666666666666666666666666665543 55566666554 345555 3666
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 150 LEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
.+++++..+.++ -+..++..+...+...|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666554 34455666666666666666666666666655
No 102
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=1.6e-05 Score=69.69 Aligned_cols=82 Identities=12% Similarity=0.035 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHH
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFF 83 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 83 (343)
.++++.+++..+.+. -|....-.+.--|+..++++.|.+...+..+.+...+ ...|..|.-.+...+++.+|+.+.
T Consensus 461 ~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~---~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS---AKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHhhhhhhHHHHHHH
Confidence 578899999988764 2444444455568889999999999999988765555 688999999999999999999999
Q ss_pred HHHHhc
Q 044084 84 RDMKEK 89 (343)
Q Consensus 84 ~~~~~~ 89 (343)
+.....
T Consensus 537 d~al~E 542 (799)
T KOG4162|consen 537 DAALEE 542 (799)
T ss_pred HHHHHH
Confidence 887654
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=3.4e-05 Score=73.69 Aligned_cols=309 Identities=10% Similarity=-0.004 Sum_probs=187.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCC------CCCh--HhHHHHHH
Q 044084 32 FYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGI------LEDP--SVYASLIC 103 (343)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~ 103 (343)
....|+++.+...++.+.......++ .........+...|+++++..++......-- .+.. .....+..
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~---~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENP---RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCc---chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 33445555555555544221111111 1223344555677899999998887754310 1111 11222334
Q ss_pred HHhcccCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhc----CCC-CchhhHHHHHHH
Q 044084 104 SFASIAEVKVAEELFKEAEEKGMLRD----LEVFLKLVLMYIEEGMVEKTLEVVESMKNA----ELN-ISDCISCVIVNG 174 (343)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~ 174 (343)
.+...|+++.|...+++..+.-...+ ....+.+...+...|++++|...+++.... +.. ....++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 45678999999999998876322222 234556677788899999999999887642 110 112244556677
Q ss_pred HhcCCcHHHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcC--CCc--ChhhHHHHHH
Q 044084 175 FSKRRAYWAAVKVYEQLISQ----GCI--P-GQVTYASIINAYCRIGLYSKAEKVFIEMQQKG--FDK--CVVAYSSMVA 243 (343)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~----~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 243 (343)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+....... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999998886653 211 1 12234445566777899999999988875531 112 2344555667
Q ss_pred HHHccCChHHHHHHHHHHhhC----CCCchHHHH--HHHHHHHhcccChhHHHh-------------------HHHHHHH
Q 044084 244 MYGKTGRIRDAMRLVAKMKPK----GCEPNVWIY--NSLMDMHGRAKNLRQLEK-------------------YTTVISA 298 (343)
Q Consensus 244 ~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~--~~l~~~~~~~~~~~~a~~-------------------~~~l~~~ 298 (343)
.+...|+.+.|.+.+.+.... +..+..... ...+..+...|+.+.|.. +..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 888899999999998887542 111111010 111233344666666554 2356677
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCCccH-HHHHHHHHHHhcccccccC
Q 044084 299 YNMAREFDMCVKFYNEFRMN----GGVIDR-AMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 299 ~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a 343 (343)
+...|++++|...+++.... |..++. .+...+..++.+.|+.++|
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999987553 333332 3566777888888887653
No 104
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=1.9e-05 Score=65.74 Aligned_cols=139 Identities=11% Similarity=0.088 Sum_probs=89.7
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (343)
+...|+.+.|+..++.+...-+. |+..+......+.+.++.++|.+.++++....+ -.....-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P-~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDP-NSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CccHHHHHHHHHHHhcCChHHH
Confidence 33556777777777776665432 566666667777777777777777777766553 1244455666777777777777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 185 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
+.+++...... +-|...|..|..+|...|+..++..-. ...|...|+++.|...+....+.
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 77777766553 456667777777777777766655432 33445566777777766666654
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=5.5e-05 Score=60.29 Aligned_cols=198 Identities=11% Similarity=0.028 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhH-HHH
Q 044084 23 GCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVY-ASL 101 (343)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 101 (343)
.-.--+...+...|++..|+.-|....+-+ |.+-.++-.-...|...|+...|+.-+.+.++. +||-..- ..-
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC----chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 334445555555666666666665553322 222222223334555555555555555555553 4443211 111
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcCCCCC--HH------------HHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhh
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKGMLRD--LE------------VFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCI 167 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 167 (343)
...+.+.|.++.|..-|+.+.++..... .. .....+..+...|+...|++....+.+..+ .+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHH
Confidence 2334555666666666666555432110 00 111223344445566666666666555443 44445
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
|..-..+|...|++..|+.=++...+.. .-+..++--+-..+...|+.+.++...++..+
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555556666666665555444444332 12223333333444444555555544444444
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.74 E-value=7.1e-06 Score=62.71 Aligned_cols=160 Identities=11% Similarity=0.055 Sum_probs=116.4
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC
Q 044084 99 ASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR 178 (343)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (343)
..+-..+...|+-+....+......... .|......++....+.|++..|+..|.+.....+ +|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 4455566666777777776666544332 3666677788888888888888888888877665 6777888888888888
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHH
Q 044084 179 RAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLV 258 (343)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (343)
|+++.|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+ +-|..+-..+.......|+++.|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888888877762 2344566777777777888888888888877764 336667777777778888888888776
Q ss_pred HHHh
Q 044084 259 AKMK 262 (343)
Q Consensus 259 ~~m~ 262 (343)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5544
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.6e-05 Score=66.85 Aligned_cols=303 Identities=16% Similarity=0.144 Sum_probs=187.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC-hHhHHHHHHHHhcc
Q 044084 30 EAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILED-PSVYASLICSFASI 108 (343)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 108 (343)
.+....|+++.|...|.+..... |++...|+.-..+|...|++++|++--.+-.+ +.|+ ...|+....++.-.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~----p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS----PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC----CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhc
Confidence 45668899999999998875433 44578899999999999999999886666555 4565 45788899999999
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc-------------------------------------------
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM------------------------------------------- 145 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------------------- 145 (343)
|++++|...|.+-.+.... +...++.+..++.....
T Consensus 84 g~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999988776532 56666666666521100
Q ss_pred --------HhHHHHHHHHHH-----hc-------CCCC---------c-------------hhhHHHHHHHHhcCCcHHH
Q 044084 146 --------VEKTLEVVESMK-----NA-------ELNI---------S-------------DCISCVIVNGFSKRRAYWA 183 (343)
Q Consensus 146 --------~~~a~~~~~~~~-----~~-------~~~~---------~-------------~~~~~~l~~~~~~~~~~~~ 183 (343)
+..|.-.+.... .. +..| . ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 000000000000 00 0000 0 0012234444555556666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHH-------HHHHHHccCChHHHHH
Q 044084 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSS-------MVAMYGKTGRIRDAMR 256 (343)
Q Consensus 184 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~ 256 (343)
+.+-+....... -+..-++....+|...|.+..+...-+...+.|.. ...-|+. +..+|.+.++++.+..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 666666666553 34444555566677777777777666665555421 1222222 3335666677888888
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhcc------cChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHH
Q 044084 257 LVAKMKPKGCEPNVWIYNSLMDMHGRA------KNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIM 330 (343)
Q Consensus 257 ~~~~m~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 330 (343)
.|.+.......|+..+=..-..--.+. -+.+.|.+...-...+.+.|++..|+..|.+++... +-|...|..-
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNR 398 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNR 398 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHH
Confidence 888877654555543322111100000 011222224444778889999999999999999986 3466779999
Q ss_pred HHHHhcccccccC
Q 044084 331 VGVFSKLSQIEEL 343 (343)
Q Consensus 331 ~~~~~~~g~~~~a 343 (343)
.-+|.++|.+.+|
T Consensus 399 Aac~~kL~~~~~a 411 (539)
T KOG0548|consen 399 AACYLKLGEYPEA 411 (539)
T ss_pred HHHHHHHhhHHHH
Confidence 9999999887653
No 108
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.73 E-value=0.00012 Score=63.29 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHH
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLIC 103 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (343)
.|-..+....++|++......|+.....- +.+.+ ..+|...+......+-++-++.++++.++. ++..-+-.+.
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraL-pvtqH-~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRAL-PVTQH-DRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC-chHhh-ccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 34445555666666666666666654432 11111 245666666666666666677777666553 2223444455
Q ss_pred HHhcccCHHHHHHHHHHHHH----------------------------------------cCCC--CC--HHHHHHHHHH
Q 044084 104 SFASIAEVKVAEELFKEAEE----------------------------------------KGML--RD--LEVFLKLVLM 139 (343)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~----------------------------------------~~~~--~~--~~~~~~l~~~ 139 (343)
.+++.+++++|.+.+..... .|+. +| ...|++|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 55566666666555544331 1111 22 3457777777
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHh
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFS 176 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (343)
|.+.|.+++|..+|++..+.-. +..-|+.+.++|+
T Consensus 258 YIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYA 292 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHH
Confidence 8888888888888877665432 3333444444443
No 109
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.73 E-value=0.00012 Score=63.25 Aligned_cols=284 Identities=10% Similarity=0.130 Sum_probs=171.1
Q ss_pred chhhHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCc
Q 044084 2 NSQSKLHYYEKMKSAGIVLD------SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGR 75 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 75 (343)
++.+-...+.+..+. +.|. ...|..+.+.|-..|+++.|..+|++..+.+...-..-..+|..-...=.++.+
T Consensus 362 ~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred ChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 345555666666553 2221 235777888888889999999999888766554333334566666667777788
Q ss_pred HHHHHHHHHHHHhcCCC----------C-------ChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044084 76 AFEILKFFRDMKEKGIL----------E-------DPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVL 138 (343)
Q Consensus 76 ~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (343)
++.|+++.+........ | +...|+..+..--..|-++....+++++.+..+. ++...-....
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAm 519 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAM 519 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 88888888776432111 1 2233445555555667788888888888887654 5544444444
Q ss_pred HHHhcCcHhHHHHHHHHHHhcCCCCch-hhHHHHHHHHhc---CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--Hc
Q 044084 139 MYIEEGMVEKTLEVVESMKNAELNISD-CISCVIVNGFSK---RRAYWAAVKVYEQLISQGCIPGQVTYASIINAY--CR 212 (343)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~--~~ 212 (343)
.+-...-++++.++|++-...-..|+. ..|+..+.-+.+ ...++.|..+|++..+ |++|...-+--|+-+- -+
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH
Confidence 455556678888888876554444443 245555544433 4568899999999888 6666543333333221 23
Q ss_pred cCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHH---HHHHHhcccChh
Q 044084 213 IGLYSKAEKVFIEMQQKGFDKC--VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNS---LMDMHGRAKNLR 287 (343)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---l~~~~~~~~~~~ 287 (343)
.|-...|..++++.... +++. ...||..|.--...=-+.....+|++.++. -||...-.. ..+.=++.|..+
T Consensus 599 ~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 599 HGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred hhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHH
Confidence 46777788888875543 2332 345666665444433445566777777765 455443322 233445667777
Q ss_pred HHHh
Q 044084 288 QLEK 291 (343)
Q Consensus 288 ~a~~ 291 (343)
.|..
T Consensus 676 RARa 679 (835)
T KOG2047|consen 676 RARA 679 (835)
T ss_pred HHHH
Confidence 7765
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.72 E-value=2.8e-05 Score=71.21 Aligned_cols=268 Identities=12% Similarity=0.068 Sum_probs=156.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
+...+..|+..+...+++++|.++.+...+... .....|-.+...+.+.++...+..+ .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P----~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHK----KSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----cceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 566889999999999999999999997665542 2234555555566677765554443 2
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (343)
++.......++..+..+...+.+.+ -+...+..+..+|-+.|+.++|..+|+++.+.++ -+..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-h
Confidence 3333334444444444455555533 2445666777777777777777777777777664 5666677777777777 7
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHH-----HccCChhHHHHHHHHHHHc-CCCcChhhHHHHHHHHHccCChHHH
Q 044084 181 YWAAVKVYEQLISQGCIPGQVTYASIINAY-----CRIGLYSKAEKVFIEMQQK-GFDKCVVAYSSMVAMYGKTGRIRDA 254 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 254 (343)
.++|.+++.+....- .+..-|+.+...+ ....+++.-.++.+.+... |..--+.++-.+-..|...++++++
T Consensus 165 L~KA~~m~~KAV~~~--i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRF--IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHH--HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 777777777665541 1111122222111 1122333333444444433 3333455666777888888899999
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHhcc-cChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 255 MRLVAKMKPKGCEPNVWIYNSLMDMHGRA-KNLRQLEKYTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 255 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
..+++.+.+.... |.....-++.+|... ++....++|-.+...--....+..|+.-|+...
T Consensus 243 i~iLK~iL~~~~~-n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 243 IYILKKILEHDNK-NNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred HHHHHHHHhcCCc-chhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHe
Confidence 9999999876322 556666777766521 222222222222222222245566777776653
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=5.9e-05 Score=62.90 Aligned_cols=198 Identities=11% Similarity=0.029 Sum_probs=135.2
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhh-HHHH
Q 044084 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVT-YASI 206 (343)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l 206 (343)
|+...+...+........-..+-.++.+..+.+ -...-|. ..-.+...|+++.|++.++.+... .|+..- ....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~ 346 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYG-RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELA 346 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHH-HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHH
Confidence 455555555555444433333333333333311 1111233 333445678899999999998877 455544 4455
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccC
Q 044084 207 INAYCRIGLYSKAEKVFIEMQQKGFDKC-VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN 285 (343)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 285 (343)
...+.+.++.++|.+.++.+.... |+ ....-.+..+|.+.|++.+|..++++.... .+-|+..|..|.++|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCc
Confidence 677888999999999999988864 44 566777888999999999999999888776 35578889999999999998
Q ss_pred hhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCccHHHHHHHHHHHh
Q 044084 286 LRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNG--GVIDRAMAGIMVGVFS 335 (343)
Q Consensus 286 ~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~ 335 (343)
..++. ......|...|+++.|+..+....+.. ..|+..-+...+....
T Consensus 424 ~~~a~--~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 424 RAEAL--LARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQLR 473 (484)
T ss_pred hHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 87774 445667788999999999999887753 2345444555555443
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.00015 Score=65.96 Aligned_cols=267 Identities=13% Similarity=0.174 Sum_probs=128.6
Q ss_pred HHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHH
Q 044084 8 HYYEKMKSAGIV--LDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRD 85 (343)
Q Consensus 8 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 85 (343)
++.+...+.+++ .|+......+.++...+-+.+-.++++++.-.+...+ .+...-|.|+-...+ -+..+..+..++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fs-e~~nLQnLLiLtAik-ad~trVm~YI~r 1045 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS-ENRNLQNLLILTAIK-ADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccc-cchhhhhhHHHHHhh-cChHHHHHHHHH
Confidence 444555554432 2444555666666666666677777666543322221 112233333333333 234445555555
Q ss_pred HHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCch
Q 044084 86 MKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISD 165 (343)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (343)
+...+. |+ +...+...+-+++|..+|+... .+....+.|+. ..+..+.|.+.-++.. ..
T Consensus 1046 LdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p 1104 (1666)
T KOG0985|consen 1046 LDNYDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EP 1104 (1666)
T ss_pred hccCCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------Ch
Confidence 543321 11 2223334444555555555432 12333333332 1233344443333332 12
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 044084 166 CISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245 (343)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (343)
..|+.+..+-.+.|...+|.+-|-+ .-|+..|..+++...+.|.+++-.+.+...++..-.|.+. +.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 2455555555555655555554433 1244556666666666666666666665555544333332 3555666
Q ss_pred HccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh-------HHHHHHHHHhcCCHHHHHHHH
Q 044084 246 GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK-------YTTVISAYNMAREFDMCVKFY 312 (343)
Q Consensus 246 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-------~~~l~~~~~~~g~~~~a~~~~ 312 (343)
++.+++.+..+++ .-||......+.+-|...|.++.|.- |..+...+...|+++.|...-
T Consensus 1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 6666655544433 23455555555555555555555543 555555555566665555443
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=3.5e-06 Score=64.36 Aligned_cols=161 Identities=12% Similarity=-0.003 Sum_probs=129.6
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044084 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEE 143 (343)
Q Consensus 64 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (343)
..+-..+...|+-+....+....... ..-|.......+....+.|++..|...+.+.....+ +|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 55667777788888887777765443 233555666688899999999999999999988664 5899999999999999
Q ss_pred CcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHH
Q 044084 144 GMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVF 223 (343)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 223 (343)
|+++.|..-|.+..+... -+....+.+.-.+.-.|+.+.|..++......+ .-|...-..+..+....|++++|+.+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999999999887655 355578888888899999999999999988774 336667777888889999999999887
Q ss_pred HHHHH
Q 044084 224 IEMQQ 228 (343)
Q Consensus 224 ~~~~~ 228 (343)
..-..
T Consensus 226 ~~e~~ 230 (257)
T COG5010 226 VQELL 230 (257)
T ss_pred ccccc
Confidence 65433
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.69 E-value=2.8e-05 Score=70.27 Aligned_cols=131 Identities=13% Similarity=0.140 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC-hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILED-PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVL 138 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (343)
...+-.|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|....++.....+. +......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 445555556666666666666666666554 333 334444555566666666666666666655533 4555555566
Q ss_pred HHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 139 MYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
++.+.|++++|..+|+++...++ -+..++..+..++...|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666655332 23445555666666666666666666665554
No 115
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=1.9e-05 Score=69.15 Aligned_cols=130 Identities=18% Similarity=0.324 Sum_probs=85.9
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCCh
Q 044084 172 VNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI 251 (343)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (343)
+.+.....+|.+|+.+++.+...+ .-..-|..+...|+..|+++.|+++|.+. ..++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 445556677788888888777663 23344666777788888888888877542 2355667778888888
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh-------HHHHHHHHHhcCCHHHHHHHHHH
Q 044084 252 RDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK-------YTTVISAYNMAREFDMCVKFYNE 314 (343)
Q Consensus 252 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-------~~~l~~~~~~~g~~~~a~~~~~~ 314 (343)
+.|.++-.+... .......|..-..-+-..|++.+|++ -...|..|-+.|..++.+++..+
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHH
Confidence 888777665542 23445556555666777777777777 34456666666666666666554
No 116
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=2.5e-05 Score=62.46 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=24.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHH
Q 044084 206 IINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAK 260 (343)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (343)
+..+++..|.+.+|+++|-.+....++.+..-...|.++|.+++++..|++++-+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 4444555555555555554444333222222223334455555555555444433
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=4.5e-06 Score=60.11 Aligned_cols=88 Identities=6% Similarity=-0.156 Sum_probs=34.4
Q ss_pred HHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHH
Q 044084 104 SFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA 183 (343)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (343)
.+...|++++|...|+......+. +...|..+...+...|++++|...|+.....++ .+...+..+..++...|++++
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHH
Confidence 333344444444444444333221 333344444444444444444444444433332 233333333334444444444
Q ss_pred HHHHHHHHHH
Q 044084 184 AVKVYEQLIS 193 (343)
Q Consensus 184 a~~~~~~~~~ 193 (343)
|...|+...+
T Consensus 111 Ai~~~~~Al~ 120 (144)
T PRK15359 111 AREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=3.7e-06 Score=73.01 Aligned_cols=214 Identities=15% Similarity=0.142 Sum_probs=158.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044084 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142 (343)
Q Consensus 63 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (343)
-..+...+...|-...|..+|+++.. |.-++.+|+..|+.++|..+..+..+ -+||+..|..+++....
T Consensus 401 q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 34566777888889999999987644 66688889999999999999888777 35789999999888877
Q ss_pred cCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHH
Q 044084 143 EGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKV 222 (343)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 222 (343)
..-+++|.++++..... .-..+.....+.+++.++.+.|+.-.+.+ +.-..+|-..-.+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77789999998876433 11112222344789999999999877764 34566788888888899999999999
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhc
Q 044084 223 FIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMA 302 (343)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~ 302 (343)
|....... +-+...||.+-.+|.+.++-.+|...+++..+.+.. +...|...+ ....+.
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENym-------------------lvsvdv 600 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYM-------------------LVSVDV 600 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechh-------------------hhhhhc
Confidence 99888764 345678999999999999999999999999887532 333333333 333455
Q ss_pred CCHHHHHHHHHHHH
Q 044084 303 REFDMCVKFYNEFR 316 (343)
Q Consensus 303 g~~~~a~~~~~~m~ 316 (343)
|.+++|++.++++.
T Consensus 601 ge~eda~~A~~rll 614 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLL 614 (777)
T ss_pred ccHHHHHHHHHHHH
Confidence 66666666666553
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.66 E-value=2.3e-06 Score=61.57 Aligned_cols=94 Identities=15% Similarity=0.048 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHh
Q 044084 27 QIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFA 106 (343)
Q Consensus 27 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (343)
.+...+...|++++|...|+...... |.+...|..+..++...|++++|+..|++....+ +.+...+..+..++.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ----PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34445555555555555555554332 2223455555555555555555555555555432 124444444555555
Q ss_pred cccCHHHHHHHHHHHHHcC
Q 044084 107 SIAEVKVAEELFKEAEEKG 125 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~ 125 (343)
..|+.++|...|+...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 5555555555555555443
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=6.1e-06 Score=74.39 Aligned_cols=137 Identities=10% Similarity=0.017 Sum_probs=118.7
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHh
Q 044084 18 IVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSV 97 (343)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (343)
.+.++..+..|..+..+.|.+++|..+++.+.+.. |.+...+..+...+.+.+++++|+..+++....... +...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHH
Confidence 44568889999999999999999999999997765 445688999999999999999999999999987533 5667
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
...+..++.+.|++++|..+|+++...+.. +..++..+...+.+.|+.++|...|++..+..
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 777888899999999999999999985532 58999999999999999999999999987643
No 121
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=5.7e-05 Score=68.42 Aligned_cols=274 Identities=14% Similarity=0.126 Sum_probs=149.4
Q ss_pred hhHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 4 QSKLHYYEKMKSAGI--VLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
.+-.++++++.-..- .-+...-|.|+-...+ -+..+..+..+++...+. |+ +...+..++-+++|..
T Consensus 1001 ~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~---------ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen 1001 NELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD---------IAEIAIENQLYEEAFA 1069 (1666)
T ss_pred HHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh---------HHHHHhhhhHHHHHHH
Confidence 445566666654321 1122233344433333 344555566655533221 11 2333445566777777
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL 161 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (343)
+|+... .+....+.|+.- .+..+.|.+.-++. ..+.+|..+..+-.+.|.+.+|++-|-+.
T Consensus 1070 ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1070 IFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 776542 233334444432 23444444333221 13456666666666666666666555433
Q ss_pred CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHH-----HHHcC------
Q 044084 162 NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIE-----MQQKG------ 230 (343)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~------ 230 (343)
.|...|..+++...+.|.+++..+++....+..-.|.. -+.++-+|++.++..+.++++.. +...|
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhh
Confidence 23335666666666666666666666555555433332 23455556665555554443210 00000
Q ss_pred --------CCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh-----------
Q 044084 231 --------FDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK----------- 291 (343)
Q Consensus 231 --------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~----------- 291 (343)
+-.++..|..|...+...|++..|..--++.- +..||..+-.+|...+.+.-|.-
T Consensus 1208 ~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhade 1281 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQICGLNIIVHADE 1281 (1666)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHHhcCceEEEehHh
Confidence 00124456666666667777766665544432 67789999899998888887765
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 292 YTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 292 ~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
...++.-|-..|-+++-+.+++..+
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 8889999999999999988887653
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=7.9e-05 Score=57.27 Aligned_cols=241 Identities=12% Similarity=0.114 Sum_probs=144.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhccc
Q 044084 30 EAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIA 109 (343)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (343)
+.+.-.|.+..++..-....... .+ ...-.-+-++|...|.+...+. +.+... .|.......+......-+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~---~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TD---VELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--ch---hHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcc
Confidence 44555677777766555443332 11 2233335566666666544332 222221 233333333333332233
Q ss_pred CHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHH
Q 044084 110 EVK-VAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188 (343)
Q Consensus 110 ~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (343)
+.+ ...++.+.+.......+......-...|+..|++++|++...... +......=...+.+..+.+-|.+.+
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 333445555555444444444455567888889999988877632 2222323344556777888888888
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 189 EQLISQGCIPGQVTYASIINAYCR----IGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 189 ~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
++|.+. -+..|.+-|..++.+ .+.+.+|.-+|++|.+. .+|+..+.+-...++...|++++|..++++...+
T Consensus 161 k~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 161 KKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888875 355677766666653 45688888899888875 4788888888888888899999999999888876
Q ss_pred CCCchHHHHHHHHHHHhcccChhHHH
Q 044084 265 GCEPNVWIYNSLMDMHGRAKNLRQLE 290 (343)
Q Consensus 265 ~~~p~~~~~~~l~~~~~~~~~~~~a~ 290 (343)
... ++.|...++-.-...|...++.
T Consensus 237 d~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 237 DAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 433 5666666665555555554443
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=9.4e-05 Score=56.45 Aligned_cols=188 Identities=11% Similarity=0.115 Sum_probs=131.2
Q ss_pred cCcHHHHHHHHHHHHhc---C-CCCChH-hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHh
Q 044084 73 SGRAFEILKFFRDMKEK---G-ILEDPS-VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVE 147 (343)
Q Consensus 73 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (343)
..++++..+++.++... | ..++.. .|..++-+....|+.+.|..+++++...-+ -+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchh
Confidence 34567777777777543 3 445544 355666677788888888888888877642 23333333333355668889
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044084 148 KTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQ 227 (343)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 227 (343)
+|.++++.+.+.++ .|..++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.--++++.
T Consensus 104 ~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999888774 56666666566666677777888777777765 56788889999999999999999998888888
Q ss_pred HcCCCcChhhHHHHHHHHHccC---ChHHHHHHHHHHhhC
Q 044084 228 QKGFDKCVVAYSSMVAMYGKTG---RIRDAMRLVAKMKPK 264 (343)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~ 264 (343)
-.. |.++..+..+.+.+.-.| +...+.+.|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 764 445555666666554444 456788888888775
No 124
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.59 E-value=0.00017 Score=57.61 Aligned_cols=275 Identities=11% Similarity=0.036 Sum_probs=184.7
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQ---IMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEI 79 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 79 (343)
+..|+.-|...++. |+..|.+ -...|...|+...|+.-+....+.. |+ -..+...-...+.++|.+++|
T Consensus 54 ~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pD--F~~ARiQRg~vllK~Gele~A 125 (504)
T KOG0624|consen 54 LSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PD--FMAARIQRGVVLLKQGELEQA 125 (504)
T ss_pred HHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--cc--HHHHHHHhchhhhhcccHHHH
Confidence 34566666665553 3334443 3457888888888888888887654 22 223444445677899999999
Q ss_pred HHHHHHHHhcCCCCC--hHhH------------HHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 044084 80 LKFFRDMKEKGILED--PSVY------------ASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM 145 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (343)
..-|+.++.....-+ ...+ ...+..+...|+...|+.....+.+..+- |...+..-..+|...|+
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCc
Confidence 999999988642111 1111 22344556778999999999999886543 88888888999999999
Q ss_pred HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhh----HHH---H------HHHHHc
Q 044084 146 VEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVT----YAS---I------INAYCR 212 (343)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~~~---l------l~~~~~ 212 (343)
+..|+.=++...+... .++.++--+-..+...|+.+.++...++-.+. .||... |.. + +.....
T Consensus 205 ~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred HHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888777765544 34445555667777888888888888887765 455432 111 1 122345
Q ss_pred cCChhHHHHHHHHHHHcCCCcC---hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCch-HHHHHHHHHHHhcccChhH
Q 044084 213 IGLYSKAEKVFIEMQQKGFDKC---VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPN-VWIYNSLMDMHGRAKNLRQ 288 (343)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 288 (343)
.+++.++.+..+...+...... ...+..+-.++...+++.+|++.-.+..+. .|| ..++.--..+|.-...++.
T Consensus 282 ~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred hhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHH
Confidence 6777788877777777642212 234455667778888999999988888864 454 6676666667776666666
Q ss_pred HHh
Q 044084 289 LEK 291 (343)
Q Consensus 289 a~~ 291 (343)
|..
T Consensus 360 AI~ 362 (504)
T KOG0624|consen 360 AIH 362 (504)
T ss_pred HHH
Confidence 655
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=0.00011 Score=56.06 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=38.9
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHH
Q 044084 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEV 152 (343)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (343)
.|.+++|+++++.+++.+ +.|..++-.=+...-..|+.-+|++-+....+.-+ .|...|.-+...|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344555555555555443 22333443333333333444444444444444322 2555555555555555555555555
Q ss_pred HHHHHhc
Q 044084 153 VESMKNA 159 (343)
Q Consensus 153 ~~~~~~~ 159 (343)
++++.-.
T Consensus 177 lEE~ll~ 183 (289)
T KOG3060|consen 177 LEELLLI 183 (289)
T ss_pred HHHHHHc
Confidence 5554433
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=7.7e-06 Score=58.43 Aligned_cols=89 Identities=10% Similarity=-0.034 Sum_probs=36.6
Q ss_pred HHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHH
Q 044084 103 CSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182 (343)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (343)
..+...|++++|...++.+...+.. +...+..+...+...|++++|..+++.....++ .+...+..+..++...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCCHH
Confidence 3334444444444444444433321 334444444444444444444444444433332 22233333344444444444
Q ss_pred HHHHHHHHHHH
Q 044084 183 AAVKVYEQLIS 193 (343)
Q Consensus 183 ~a~~~~~~~~~ 193 (343)
+|...|+...+
T Consensus 103 ~A~~~~~~al~ 113 (135)
T TIGR02552 103 SALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 127
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=0.00011 Score=65.19 Aligned_cols=211 Identities=14% Similarity=0.118 Sum_probs=111.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCC
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESR---------KLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGI 91 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 91 (343)
+...|..+...|.+..+++-|.-.+-.|... ...++ ...+- ..-.....|-.++|..+|++-++
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eak--vAvLAieLgMlEeA~~lYr~ckR--- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAK--VAVLAIELGMLEEALILYRQCKR--- 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhH--HHHHHHHHhhHHHHHHHHHHHHH---
Confidence 3345666666666666665555444433211 01110 01111 12222345666666666666554
Q ss_pred CCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh----------cCC
Q 044084 92 LEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKN----------AEL 161 (343)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~ 161 (343)
|..|=..|-..|.+++|.++-+.--+..+ ..||......+-..++.+.|++.|++... ..+
T Consensus 829 ------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 829 ------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred ------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 33344455556667766666443222221 23444444555555666666666654311 111
Q ss_pred ---------CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 044084 162 ---------NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFD 232 (343)
Q Consensus 162 ---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (343)
..+...|......+-..|+.+.|+.+|....+ |-.+++..|-.|+.++|-++-++ .
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---s--- 964 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---S--- 964 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---c---
Confidence 11222344444444455666666666655443 33455555666777777665443 2
Q ss_pred cChhhHHHHHHHHHccCChHHHHHHHHHHh
Q 044084 233 KCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
-|......+.+.|-..|++.+|..+|.+..
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 356667788889999999999998887765
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.52 E-value=6.6e-06 Score=58.78 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAY 210 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 210 (343)
.....+...+...|++++|.+.|+.+...++ .+...+..+..++...|++++|...+++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3444455555555555555555555554433 234445555555555555555555555554442 22334444444455
Q ss_pred HccCChhHHHHHHHHHHHc
Q 044084 211 CRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~ 229 (343)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 129
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=6.7e-05 Score=67.81 Aligned_cols=182 Identities=12% Similarity=0.038 Sum_probs=128.7
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKF 82 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 82 (343)
.+.|+..|-+..+..+ -=...|..|...|....+..+|.+.|+...+.+ +.+...+......|++..+++.|..+
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD----atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD----ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chhhhhHHHHHHHhhccccHHHHHHH
Confidence 4556666666665432 124579999999999889999999999886544 44568888999999999999999988
Q ss_pred HHHHHhcCCC-CChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC
Q 044084 83 FRDMKEKGIL-EDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL 161 (343)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (343)
.-..-+.... .-...|....-.+...++...+..-|+...+..+. |...|..++.+|.+.|++..|.++|.+....++
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 4333322110 01122333444567888899999999998887764 899999999999999999999999998876543
Q ss_pred CCchhhHHHHH--HHHhcCCcHHHHHHHHHHHHH
Q 044084 162 NISDCISCVIV--NGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 162 ~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~ 193 (343)
+. +|.... ..-+..|.+.++...+.....
T Consensus 628 --~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 --LS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 21 333222 223457788888777776654
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.48 E-value=5.2e-05 Score=66.52 Aligned_cols=188 Identities=16% Similarity=0.195 Sum_probs=117.2
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (343)
.+.+....+.|.+|..+++.+..... -...|..+...|...|+++.|.++|.+.- .++--|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34455566777888888777776542 34456677778888888888888775542 24556777888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHH
Q 044084 181 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAK 260 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (343)
|+.|.++-.+.. |.......|..-..-.-..|++.+|++++-.+.. |+ ..|.+|-+.|..+..+++..+
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 888877765543 2233344454444555667777777776643322 22 345667777777777666655
Q ss_pred HhhCCCCchHHHHHHHHHHHhcccChhHHHh-------HHHHHHHHHhcCCHHHHHHHHH
Q 044084 261 MKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK-------YTTVISAYNMAREFDMCVKFYN 313 (343)
Q Consensus 261 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-------~~~l~~~~~~~g~~~~a~~~~~ 313 (343)
-.... -..|...+..-|...|++..|+. |...+..|...+.+++|.++-+
T Consensus 876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHh
Confidence 43211 12344556666677777777765 6777777777777777665544
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.42 E-value=4.1e-07 Score=47.75 Aligned_cols=33 Identities=30% Similarity=0.667 Sum_probs=23.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCch
Q 044084 237 AYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPN 269 (343)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 269 (343)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777777776665
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=6.3e-05 Score=57.80 Aligned_cols=193 Identities=13% Similarity=0.133 Sum_probs=129.5
Q ss_pred HHHHHHHHHhhccCcHHHHH-HHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEIL-KFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
.....+......-++.+.-+ ++.+.+.......+......-...|+..+++++|++...... +......=...
T Consensus 73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI 146 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQI 146 (299)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHH
Confidence 33333333333344444333 444555444444343444444567889999999999887621 33344444566
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc----CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK----RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGL 215 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 215 (343)
+.+..+.+-|.+.+++|.+. .+..|.+-|..++.+ .+....|.-+|++|-++ .+|+..+.+-...++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 77888899999999999875 344566656666554 56788999999999875 47899999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChH-HHHHHHHHHhhC
Q 044084 216 YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR-DAMRLVAKMKPK 264 (343)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~ 264 (343)
+++|+.+++...... ..++.+...++.+-...|... ...+.+.+++..
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999999998875 345666666666555566543 345566666654
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=6.3e-05 Score=63.02 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=57.0
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (343)
++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..+..+ .+......-...+...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 3334444455555555555555443 22 222344444445555555555555543332 233334444444555555
Q ss_pred HHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHccCChhHHHHHHHHH
Q 044084 181 YWAAVKVYEQLISQGCIPGQ-VTYASIINAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 226 (343)
++.|.++.+++.+. .|+. .+|..|..+|.+.|+++.|...++.+
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555544 2332 35555555555555555555555443
No 134
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0011 Score=56.97 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=67.7
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHH--------HHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc------CCC
Q 044084 167 ISCVIVNGFSKRRAYWAAVKVYE--------QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK------GFD 232 (343)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~ 232 (343)
+...++......|+++.|.+++. .+.+.+..| .+...+...+.+.++-+.|..++...... +-.
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 33445555666777777777777 444444333 34445555566666666666666655432 101
Q ss_pred cChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcc
Q 044084 233 KCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRA 283 (343)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 283 (343)
.-..++..+...-.+.|+-++|..+++++.+.+ .+|..+...++.+|++.
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence 112234444445556788888888888888752 55777777777777764
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=0.0001 Score=65.53 Aligned_cols=234 Identities=16% Similarity=0.147 Sum_probs=155.2
Q ss_pred ChhhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc-C-------
Q 044084 21 DSGCYCQIME--AFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK-G------- 90 (343)
Q Consensus 21 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~------- 90 (343)
|..|-..+++ .|...|+.+.|.+-.+-+++ ...|..+.+.|.+.++++-|.-.+..|... |
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS---------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS---------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh---------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 4445555554 46778999999888776644 367999999999999988887666666432 1
Q ss_pred -CCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHH
Q 044084 91 -ILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISC 169 (343)
Q Consensus 91 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (343)
-.|+ .+=..+.......|.+++|+.+|.+-.+.. .|=..|...|.|++|.++-+.--+..+. .||.
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy 862 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYY 862 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehh---hhHH
Confidence 1122 222223334557788999999998877632 3446677889999999987765443332 2566
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHH----------HcC---------CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 044084 170 VIVNGFSKRRAYWAAVKVYEQLI----------SQG---------CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230 (343)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~----------~~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (343)
.....+...++.+.|++.|++.. ... -..|...|......+-..|+.+.|+.++.....
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 66677777888888888877532 111 012334445555555567777777777765443
Q ss_pred CCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh
Q 044084 231 FDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK 291 (343)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 291 (343)
|-++++..+-.|+.++|-++-++-- |......|.+.|-..|++.+|..
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHH
Confidence 5567777788888888887765532 55556667777888888777766
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.38 E-value=6.2e-07 Score=46.68 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCc
Q 044084 236 VAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEP 268 (343)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 268 (343)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355566666666666666666666666555554
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.37 E-value=3.6e-05 Score=64.40 Aligned_cols=126 Identities=7% Similarity=0.085 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAY 210 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 210 (343)
.....|+..+...++++.|+++|+++.+.. |+ ....+++.+...++..+|.+++++..+.. +-+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345566777778899999999999999876 33 45567888888899999999999998763 34556666667778
Q ss_pred HccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHh
Q 044084 211 CRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
.+.++++.|..+.+++.+.. |-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 89999999999999999975 4456799999999999999999999988875
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.36 E-value=3.9e-05 Score=55.42 Aligned_cols=118 Identities=10% Similarity=-0.018 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCCh--HhHHHHHHHHhcccCHH
Q 044084 35 IGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDP--SVYASLICSFASIAEVK 112 (343)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 112 (343)
.++...+...++.+.+...... ......-.+...+...|++++|...|+........|+. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4555555555555544432211 11122223344555555555555555555554311111 12222344445555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHH
Q 044084 113 VAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVES 155 (343)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (343)
+|+..++...... .....+......|.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555554422211 2233444455555555555555555543
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.36 E-value=8.4e-07 Score=46.51 Aligned_cols=32 Identities=16% Similarity=0.436 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCC
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPG 199 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 199 (343)
|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 140
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.36 E-value=8.9e-06 Score=53.73 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=69.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCC-CchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 238 YSSMVAMYGKTGRIRDAMRLVAKMKPKGC-EPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
....|..+...+++.....+|+.++..|+ .|+..+|+.++++..+..--..+ -.++.-..+.+|++|.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~-----------ie~kl~~LLtvYqDiL 96 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED-----------IENKLTNLLTVYQDIL 96 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh-----------HHHHHHHHHHHHHHHH
Confidence 34556666677899999999999999998 89999999999887764322111 1234556789999999
Q ss_pred hCCCCccHHHHHHHHHHHhcc
Q 044084 317 MNGGVIDRAMAGIMVGVFSKL 337 (343)
Q Consensus 317 ~~~~~p~~~~~~~l~~~~~~~ 337 (343)
..+++|+..||+.++..+.+.
T Consensus 97 ~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 97 SNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred HhccCCcHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 141
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.35 E-value=1.1e-05 Score=67.77 Aligned_cols=124 Identities=11% Similarity=0.053 Sum_probs=90.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC--CCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhh
Q 044084 125 GMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE--LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVT 202 (343)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 202 (343)
+.+.+......++.......+++.+..++.+..... ...-..|..++++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 333466677777777777777888888887776542 212233556888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHcc
Q 044084 203 YASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248 (343)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (343)
++.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877766556666666555555544
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=5.8e-05 Score=54.53 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=4.7
Q ss_pred cCHHHHHHHHHHH
Q 044084 109 AEVKVAEELFKEA 121 (343)
Q Consensus 109 ~~~~~a~~~~~~~ 121 (343)
|++++|...|+.+
T Consensus 62 g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 62 GDYDEAKAALEKA 74 (145)
T ss_pred CCHHHHHHHHHHH
Confidence 3333333333333
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.33 E-value=9.4e-07 Score=45.98 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=15.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcCCCC
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILE 93 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 93 (343)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444443
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.33 E-value=1.6e-05 Score=66.87 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhc--CCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEK--GILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLV 137 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (343)
......+++.+....+.+.+..++.+.... ....-+.|..++++.|.+.|..+.+..++..=...|+-||..++|.||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 455666777777777788888887777665 222334455678888888888888888888878888888888888888
Q ss_pred HHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC
Q 044084 138 LMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR 178 (343)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (343)
+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888887776655545555555555544443
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.32 E-value=0.0023 Score=57.72 Aligned_cols=220 Identities=10% Similarity=0.114 Sum_probs=130.8
Q ss_pred CchhhHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHH
Q 044084 1 TNSQSKLHYYEKMKSAGIVLDSGCYCQIMEA--FYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFE 78 (343)
Q Consensus 1 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 78 (343)
+++++|++..+.+.+.. |+.. |...+.+ ..+.|+.++|..+++.....+.. +..+...+-.+|...++.++
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~----D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT----DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC----chHHHHHHHHHHHHHhhhhH
Confidence 36778888888888763 4443 3444444 46889999999888877655443 36888889999999999999
Q ss_pred HHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc----------HhH
Q 044084 79 ILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM----------VEK 148 (343)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~ 148 (343)
|..+|++.... .|+......+..+|.+.+++.+-.++--++.+.-+ ..+..+=++++.+.+.-. ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999988775 56677777788888888877665555444444322 244444444444443211 123
Q ss_pred HHHHHHHHHhcC-CCCchhhHHHHHHHHhcCCcHHHHHHHHH-HHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHH
Q 044084 149 TLEVVESMKNAE-LNISDCISCVIVNGFSKRRAYWAAVKVYE-QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 149 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 226 (343)
|...++.+.+.+ ..-+..-.......+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444455544433 21121112222333445677777777773 3333222222333334455555556666655555555
Q ss_pred HHcC
Q 044084 227 QQKG 230 (343)
Q Consensus 227 ~~~~ 230 (343)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 5544
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.29 E-value=2.3e-05 Score=51.85 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=47.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhcCC-CCChHhHHHHHHHHhccc--------CHHHHHHHHHHHHHcCCCCCHHHH
Q 044084 63 YKILCDSLGKSGRAFEILKFFRDMKEKGI-LEDPSVYASLICSFASIA--------EVKVAEELFKEAEEKGMLRDLEVF 133 (343)
Q Consensus 63 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 133 (343)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 33445555556777777777777777777 677777777776655432 233445555566666666666666
Q ss_pred HHHHHHHH
Q 044084 134 LKLVLMYI 141 (343)
Q Consensus 134 ~~l~~~~~ 141 (343)
+.++..+.
T Consensus 108 nivl~~Ll 115 (120)
T PF08579_consen 108 NIVLGSLL 115 (120)
T ss_pred HHHHHHHH
Confidence 66555544
No 147
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.24 E-value=0.0015 Score=58.78 Aligned_cols=224 Identities=13% Similarity=0.113 Sum_probs=150.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHh--hccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC
Q 044084 33 YKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL--GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE 110 (343)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (343)
...+++.+|......+.++.+.. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|-..++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~------~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA------LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 46688999999999988776432 355555554 5789999999999888776544 88899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC-C---------c
Q 044084 111 VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR-R---------A 180 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---------~ 180 (343)
.+++..+|++..... |+......+..+|.+.+.+.+-.++--++-+.-+ -+...+=++++..... . -
T Consensus 93 ~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 93 LDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccccchh
Confidence 999999999998764 6677888888889988877654444333333211 2222333333333321 1 1
Q ss_pred HHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCChhHHHHHHHH-HHHcCCCcChhhHHHHHHHHHccCChHHHHHHH
Q 044084 181 YWAAVKVYEQLISQGCIP-GQVTYASIINAYCRIGLYSKAEKVFIE-MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLV 258 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (343)
..-|.++++.+.+.+-+. +..-...-...+...|++++|..++.. ..+.-.+.+...-+.-+..+...+++.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 234666777776654111 111222223445678899999999944 444433445555566778888899999999988
Q ss_pred HHHhhCCC
Q 044084 259 AKMKPKGC 266 (343)
Q Consensus 259 ~~m~~~~~ 266 (343)
.++...|.
T Consensus 250 ~~Ll~k~~ 257 (932)
T KOG2053|consen 250 SRLLEKGN 257 (932)
T ss_pred HHHHHhCC
Confidence 88888753
No 148
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.20 E-value=0.0032 Score=57.62 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHH
Q 044084 76 AFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVES 155 (343)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (343)
...++..|-+..+.... -...|..|...|....+...|.+.|+...+.... +...+......|.+..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 56666666555554322 2457888888888888899999999998886543 678888899999999999999998444
Q ss_pred HHhcCCCCchhh--HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc
Q 044084 156 MKNAELNISDCI--SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK 233 (343)
Q Consensus 156 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (343)
..+... .-... |...--.|...++...+..-|+...+.. +-|...|..+..+|.++|++..|.++|.+..... |
T Consensus 552 ~~qka~-a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 552 AAQKAP-AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred Hhhhch-HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 433322 11112 2233345667788888888888877764 4567888999999999999999999998887754 4
Q ss_pred ChhhHHHH--HHHHHccCChHHHHHHHHHHhh
Q 044084 234 CVVAYSSM--VAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 234 ~~~~~~~l--~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
+ ..|... ....+..|.+.+|...+.....
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 233322 2334567888888888877764
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.15 E-value=0.00017 Score=50.07 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=8.9
Q ss_pred HHHHHhcCCcHHHHHHHHHHHH
Q 044084 171 IVNGFSKRRAYWAAVKVYEQLI 192 (343)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~ 192 (343)
+..++...|+++.|.+.|+.+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3333444444444444444433
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.15 E-value=0.00018 Score=49.90 Aligned_cols=59 Identities=19% Similarity=0.111 Sum_probs=23.9
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLR--DLEVFLKLVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
+..++.+.|+++.|...++.+....+.. ....+..+..++.+.|+.++|...++++.+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3444444444444444444444322110 1233334444444444444444444444433
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.11 E-value=0.00025 Score=57.32 Aligned_cols=143 Identities=13% Similarity=0.089 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHH-HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICS-FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
.+|..+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.- ..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 467778888888888888888888887542 2234444444444 233466677888888877753 3477788888888
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCCc---hhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNIS---DCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIIN 208 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 208 (343)
+...++.+.|..+|++.... +.+. ...|...+..-.+.|+.+.+.++.+++.+. .|+...+..+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 88888888888888887755 3222 236778888778888888888888887775 344344444443
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.10 E-value=0.00011 Score=59.35 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=68.3
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM-YIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGF 175 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (343)
+|..+++..-+.+..+.|..+|.+..+.+. .+..+|...... |...++.+.|..+|+...+.-. .+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-SDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 455666666666666666666666654322 233444433333 2223445556666666554422 4445566666666
Q ss_pred hcCCcHHHHHHHHHHHHHcCCCCCH---hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 176 SKRRAYWAAVKVYEQLISQGCIPGQ---VTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++..++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666554 22211 25555555555566666666666665554
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.10 E-value=4.5e-06 Score=42.25 Aligned_cols=29 Identities=28% Similarity=0.688 Sum_probs=16.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 044084 237 AYSSMVAMYGKTGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 265 (343)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.08 E-value=0.00013 Score=48.01 Aligned_cols=89 Identities=22% Similarity=0.283 Sum_probs=36.5
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 044084 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM 145 (343)
Q Consensus 66 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (343)
+...+...|++++|...+++..+... .+...+..+...+...++++.|.+.++...+.... +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 33334444444444444444433311 11233333344444444444444444444443221 22344444444444444
Q ss_pred HhHHHHHHHHH
Q 044084 146 VEKTLEVVESM 156 (343)
Q Consensus 146 ~~~a~~~~~~~ 156 (343)
+++|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 155
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.06 E-value=0.0021 Score=54.79 Aligned_cols=178 Identities=13% Similarity=0.138 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHH
Q 044084 112 KVAEELFKEAEEKGMLRDLEVFLKLVLMYIEE---GMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188 (343)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (343)
+++.++++.....-...+..+|..+...--.. +..+...++++++......--..+|..++....+..-+..|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 45555666555433333444444433321111 135667777777765443333447888999999999999999999
Q ss_pred HHHHHcCCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCC
Q 044084 189 EQLISQGCIP-GQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCE 267 (343)
Q Consensus 189 ~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 267 (343)
.+..+.+..+ ++...++++..|| .++.+-|.++|+.=.+. +.-++.--...++.+...|+-..+..+|++....++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9999988777 7778888888776 47899999999975544 1234445567888888999999999999999988666
Q ss_pred chH--HHHHHHHHHHhcccChhHHHh
Q 044084 268 PNV--WIYNSLMDMHGRAKNLRQLEK 291 (343)
Q Consensus 268 p~~--~~~~~l~~~~~~~~~~~~a~~ 291 (343)
||. ..|..+++-=..-|++..+.+
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 554 678888777676676665544
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.06 E-value=0.0019 Score=51.04 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=95.9
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhcCCCCChHhH---HHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044084 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSVY---ASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142 (343)
Q Consensus 66 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (343)
....+...|++++|.+.|+++......+ .... -.+..++.+.++++.|...+++..+..+.....-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 4445566788888888888887753322 2221 33556777888888888888888776543222223333333221
Q ss_pred --cC---------------c---HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhh
Q 044084 143 --EG---------------M---VEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVT 202 (343)
Q Consensus 143 --~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 202 (343)
.+ + ..+|++.|+.+.+.- -...-..+|...+..+... .-..-
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---------------P~S~ya~~A~~rl~~l~~~---la~~e 178 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---------------PNSQYTTDATKRLVFLKDR---LAKYE 178 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---------------cCChhHHHHHHHHHHHHHH---HHHHH
Confidence 11 1 233445555554432 2222234444433333322 00111
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc--CCCcChhhHHHHHHHHHccCChHHHHHHHHHHh
Q 044084 203 YASIINAYCRIGLYSKAEKVFIEMQQK--GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
-.+.+-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 179 -~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 -LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 13455677777777777777777765 222334455666777777777777776665543
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.03 E-value=0.00016 Score=47.55 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=43.6
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (343)
+...+...|++++|...+++..+.... +...+..+...+...+++++|.+.++....... .+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHh
Confidence 344444555555555555555543321 334444455555555555555555555544332 222344444445555555
Q ss_pred HHHHHHHHHHHH
Q 044084 181 YWAAVKVYEQLI 192 (343)
Q Consensus 181 ~~~a~~~~~~~~ 192 (343)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.03 E-value=9.6e-06 Score=41.00 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 159
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.02 E-value=0.0067 Score=51.83 Aligned_cols=121 Identities=9% Similarity=0.160 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHc-CCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcccChhHHHh----
Q 044084 218 KAEKVFIEMQQK-GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEP-NVWIYNSLMDMHGRAKNLRQLEK---- 291 (343)
Q Consensus 218 ~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~---- 291 (343)
....+++++... ...| ..+|-.++..-.+..-+..|..+|.+..+.+..+ +..+.++++.-|+.. +..-|.+
T Consensus 349 ~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIFeL 426 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIFEL 426 (656)
T ss_pred hhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHHHH
Confidence 333444444432 2223 3456677777777777888888998888887766 677777888776643 4444433
Q ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccH--HHHHHHHHHHhccccc
Q 044084 292 -----------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDR--AMAGIMVGVFSKLSQI 340 (343)
Q Consensus 292 -----------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~ 340 (343)
-...+.-+...++-..|..+|++....++.||. ..|..+++-=..-|++
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 344455556677777888888888887666665 3477777655555543
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.01 E-value=1.8e-05 Score=51.15 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=7.7
Q ss_pred HHHHhcccCHHHHHHHHHH
Q 044084 102 ICSFASIAEVKVAEELFKE 120 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~ 120 (343)
..++.+.|++++|..+++.
T Consensus 32 a~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3334444444444444433
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=2.8e-05 Score=50.23 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=36.0
Q ss_pred cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHH
Q 044084 109 AEVKVAEELFKEAEEKGML-RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKV 187 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (343)
|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+. .+....-.+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555554331 1233344455555555555555555555 22211 1112222334555555555555555
Q ss_pred HHH
Q 044084 188 YEQ 190 (343)
Q Consensus 188 ~~~ 190 (343)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.98 E-value=0.00038 Score=49.76 Aligned_cols=90 Identities=8% Similarity=-0.054 Sum_probs=45.2
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 044084 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM 145 (343)
Q Consensus 66 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (343)
+...+...|++++|.++|+-+...+.. +..-|-.|..++-..|++++|...|.......+. |+..+..+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence 344444555555555555555443221 3333444444444555555555555555554432 45555555555555555
Q ss_pred HhHHHHHHHHHH
Q 044084 146 VEKTLEVVESMK 157 (343)
Q Consensus 146 ~~~a~~~~~~~~ 157 (343)
.+.|++.|+...
T Consensus 119 ~~~A~~aF~~Ai 130 (157)
T PRK15363 119 VCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.97 E-value=0.00078 Score=50.29 Aligned_cols=92 Identities=15% Similarity=0.111 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC--hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044084 58 SSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILED--PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLK 135 (343)
Q Consensus 58 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (343)
.....+..+...+...|++++|...|++.......+. ...+..+...+.+.|+++.|...+.+..+.... +...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 3345667777777777888888888887766433222 345666777777778888888888777775432 4566666
Q ss_pred HHHHHHhcCcHhHHH
Q 044084 136 LVLMYIEEGMVEKTL 150 (343)
Q Consensus 136 l~~~~~~~~~~~~a~ 150 (343)
+...+...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 666776666644433
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.96 E-value=0.0049 Score=48.70 Aligned_cols=171 Identities=12% Similarity=0.083 Sum_probs=99.5
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEV---FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (343)
....+...|+++.|...|+.+...-+.+ ... .-.++.+|.+.+++++|...+++..+..+.-...-|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 4445567889999999999988865432 222 245667788899999999999988876553333344444444331
Q ss_pred --C---------------CcH---HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhh
Q 044084 178 --R---------------RAY---WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA 237 (343)
Q Consensus 178 --~---------------~~~---~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (343)
. .+. ..|.+.|+++. +-|-...-.++|...+..+...= ...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~l----a~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDRL----AKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHHH----HHH
Confidence 1 011 22333333333 33333344455555444443320 111
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhC--CCCchHHHHHHHHHHHhcccChhHHHh
Q 044084 238 YSSMVAMYGKTGRIRDAMRLVAKMKPK--GCEPNVWIYNSLMDMHGRAKNLRQLEK 291 (343)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 291 (343)
--.+.+.|.+.|.+..|..-++.+++. +..........++.+|...|..++|..
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 125667788899999999989888875 223333444555556665555555443
No 165
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.95 E-value=0.0072 Score=49.65 Aligned_cols=103 Identities=11% Similarity=0.076 Sum_probs=60.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHh
Q 044084 202 TYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHG 281 (343)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 281 (343)
+.+..+.-+...|+...|.++-.+. . .|+-.-|...+.+++..++|++...+... . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 4444455555666666655554333 2 25666666777777777777666554332 1 12345566666666
Q ss_pred cccChhHHHh------HHHHHHHHHhcCCHHHHHHHHHH
Q 044084 282 RAKNLRQLEK------YTTVISAYNMAREFDMCVKFYNE 314 (343)
Q Consensus 282 ~~~~~~~a~~------~~~l~~~~~~~g~~~~a~~~~~~ 314 (343)
+.|+..+|.. +..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCChHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666665 45556666667777666655433
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.94 E-value=0.0014 Score=46.94 Aligned_cols=91 Identities=8% Similarity=0.048 Sum_probs=51.0
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcH
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (343)
...+...|++++|..+|+.+....+. +...|-.|.-++-..|++++|+..|......++ -+...+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 33444556666666666665554432 455555555566666666666666666555543 3444555555556666666
Q ss_pred HHHHHHHHHHHHc
Q 044084 182 WAAVKVYEQLISQ 194 (343)
Q Consensus 182 ~~a~~~~~~~~~~ 194 (343)
+.|.+-|+.....
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=0.00039 Score=51.66 Aligned_cols=62 Identities=19% Similarity=0.039 Sum_probs=30.9
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKGMLR--DLEVFLKLVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
|..+...+...|++++|...+++.......+ ...++..+...+...|++++|+..+++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444445555555555555554432221 1234555555555555555555555555443
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=0.00053 Score=57.56 Aligned_cols=95 Identities=7% Similarity=-0.065 Sum_probs=76.1
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044084 65 ILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144 (343)
Q Consensus 65 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (343)
.-...+...|+++.|++.|++.++.... +...|..+..++.+.|++++|...++++.+.... +...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 3455667788999999999998886432 5667777888888889999999999988887643 6778888888899999
Q ss_pred cHhHHHHHHHHHHhcCC
Q 044084 145 MVEKTLEVVESMKNAEL 161 (343)
Q Consensus 145 ~~~~a~~~~~~~~~~~~ 161 (343)
++++|+..|++..+.++
T Consensus 85 ~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 85 EYQTAKAALEKGASLAP 101 (356)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 99999999998887653
No 169
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.90 E-value=0.00027 Score=52.99 Aligned_cols=105 Identities=14% Similarity=0.209 Sum_probs=61.4
Q ss_pred CchhhHHHHHHHHhc-----CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhh
Q 044084 163 ISDCISCVIVNGFSK-----RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA 237 (343)
Q Consensus 163 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (343)
.+..+|..+++.|.+ .|+.+=....++.|.+-|+.-|..+|+.|++.+-+ |.+- |. ..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-NF 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-cH
Confidence 344455555555543 34555555555555555655566666666555543 2211 10 01
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccCh
Q 044084 238 YSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286 (343)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 286 (343)
+.++...| -.+-+-|++++++|...|+-||..|+..+++.+.+.+..
T Consensus 108 fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 108 FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 11111111 123466889999999999999999999999998876643
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.88 E-value=0.00052 Score=51.00 Aligned_cols=62 Identities=19% Similarity=0.045 Sum_probs=26.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcCCCC--ChHhHHHHHHHHhcccCHHHHHHHHHHHHH
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILE--DPSVYASLICSFASIAEVKVAEELFKEAEE 123 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (343)
.|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+++..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444555554444444332111 112344444444444555555555444444
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.87 E-value=0.00043 Score=58.08 Aligned_cols=92 Identities=9% Similarity=-0.033 Sum_probs=67.0
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCh
Q 044084 137 VLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLY 216 (343)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 216 (343)
...+...|++++|++.|++..+.+. .+...|..+..+|...|++++|+..++++.... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4556677888888888888777665 355567777777788888888888888877763 23455677777777788888
Q ss_pred hHHHHHHHHHHHcC
Q 044084 217 SKAEKVFIEMQQKG 230 (343)
Q Consensus 217 ~~a~~~~~~~~~~~ 230 (343)
++|...|+...+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888777754
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.0014 Score=48.85 Aligned_cols=89 Identities=18% Similarity=0.064 Sum_probs=63.8
Q ss_pred hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHH
Q 044084 95 PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD--LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIV 172 (343)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (343)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+..+ -+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 34566677778888999999999998887543332 46788888888899999999999888877654 2444566666
Q ss_pred HHHhcCCcHHHH
Q 044084 173 NGFSKRRAYWAA 184 (343)
Q Consensus 173 ~~~~~~~~~~~a 184 (343)
..+...|+...+
T Consensus 114 ~~~~~~g~~~~a 125 (172)
T PRK02603 114 VIYHKRGEKAEE 125 (172)
T ss_pred HHHHHcCChHhH
Confidence 667666664433
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.0033 Score=51.11 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=54.2
Q ss_pred HHHHHHHHHhc-CcHhHHHHHHHHHHh----cCCC-CchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCC-----CCHh
Q 044084 133 FLKLVLMYIEE-GMVEKTLEVVESMKN----AELN-ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCI-----PGQV 201 (343)
Q Consensus 133 ~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~ 201 (343)
+..+...|-.. |++++|++.|++..+ .+.+ .-..++..+...+.+.|++++|.++|++....... .+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33344444444 555555555555432 1210 01123444555566666666666666665543211 1111
Q ss_pred -hHHHHHHHHHccCChhHHHHHHHHHHHcC--CCcC--hhhHHHHHHHHHcc--CChHHHHHHHHHHh
Q 044084 202 -TYASIINAYCRIGLYSKAEKVFIEMQQKG--FDKC--VVAYSSMVAMYGKT--GRIRDAMRLVAKMK 262 (343)
Q Consensus 202 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~--~~~~~a~~~~~~m~ 262 (343)
.+...+-++...||+-.|...++...... +..+ ......|+.++-.. ..+..+..-|+.+.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 11122223344566666666666655432 1111 23344455554321 23444444444444
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.85 E-value=0.0004 Score=52.13 Aligned_cols=105 Identities=20% Similarity=0.273 Sum_probs=74.4
Q ss_pred CCChHhHHHHHHHHhcc-----cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchh
Q 044084 92 LEDPSVYASLICSFASI-----AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDC 166 (343)
Q Consensus 92 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (343)
..+-.+|..++..+.+. |..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 44777888888877643 6677777788888888888888888888877654 3221 111
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 044084 167 ISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGL 215 (343)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 215 (343)
.+.++..- .-.+-+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 123567789999999999999999999999999987765
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.0042 Score=54.74 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
+..|..+.-.+...|++++|...+++....+ |+...|..+...+...|++++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444555555555555555444 24445555555555555555555555555444
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.79 E-value=0.0046 Score=50.24 Aligned_cols=134 Identities=14% Similarity=0.269 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC-CcHHHHHHHHHHHHHc----CCCCC--HhhHHH
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR-RAYWAAVKVYEQLISQ----GCIPG--QVTYAS 205 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~p~--~~~~~~ 205 (343)
|...+..|...|++..|-+++.. +...|... |+++.|.+.|++..+. + .+. ...+..
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~ 160 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLK 160 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHH
Confidence 33444555666666665554444 44556666 8999999999887653 2 222 345667
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCC-----cChh-hHHHHHHHHHccCChHHHHHHHHHHhhC--CCCc--hHHHHHH
Q 044084 206 IINAYCRIGLYSKAEKVFIEMQQKGFD-----KCVV-AYSSMVAMYGKTGRIRDAMRLVAKMKPK--GCEP--NVWIYNS 275 (343)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p--~~~~~~~ 275 (343)
+...+.+.|++++|.++|+++...... .+.. .+-..+-++...|+...|.+.+++.... ++.. .......
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 788899999999999999998875322 2222 2334455677789999999999998865 2222 2345555
Q ss_pred HHHHHhc
Q 044084 276 LMDMHGR 282 (343)
Q Consensus 276 l~~~~~~ 282 (343)
|+.++-.
T Consensus 241 l~~A~~~ 247 (282)
T PF14938_consen 241 LLEAYEE 247 (282)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666554
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=0.00014 Score=44.65 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=39.3
Q ss_pred ccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHH
Q 044084 212 RIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNS 275 (343)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 275 (343)
..|++++|..+|+.+.... |-+...+..+..+|.+.|++++|.++++++... .|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHH
Confidence 4577777777777777664 335666667777777777777777777777765 445444333
No 178
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.75 E-value=0.011 Score=45.50 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc
Q 044084 27 QIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK 89 (343)
Q Consensus 27 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 89 (343)
.....+.+.|++.+|.+.|+.+....+.. +-...+.-.++.++.+.|+++.|...++++.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s-~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNS-PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445667777777777777776654332 333455666677777777777777777777665
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0052 Score=54.17 Aligned_cols=63 Identities=13% Similarity=0.007 Sum_probs=36.6
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 200 QVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 200 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444333444566666666666666654 45556666666666666666666666666544
No 180
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.021 Score=47.35 Aligned_cols=223 Identities=15% Similarity=0.055 Sum_probs=102.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC-hHhHHHHHHHHhc
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILED-PSVYASLICSFAS 107 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 107 (343)
...+.+..++..|+..+....+..+. +...|..-...+...+++++++--.+.-.+. +|. .....-.-+++..
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd----~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD----NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLA 129 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc----chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhh
Confidence 33455666777777777777665532 2455666666666666676666555443332 111 1122222223333
Q ss_pred ccCHHHHHHHHH------------H---HHHcCC-CCCHHHHHHH-HHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHH
Q 044084 108 IAEVKVAEELFK------------E---AEEKGM-LRDLEVFLKL-VLMYIEEGMVEKTLEVVESMKNAELNISDCISCV 170 (343)
Q Consensus 108 ~~~~~~a~~~~~------------~---~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (343)
.++..+|...++ . ...... +|.-..+..+ ..++.-.|++++|..+--.+.+.+. .+ .+..
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n--~~al 206 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TN--AEAL 206 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-ch--hHHH
Confidence 333333332222 1 111111 1111222222 2334455666666666665555443 12 2223
Q ss_pred HHH--HHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHH---H----------HHHHccCChhHHHHHHHHHHHc---CCC
Q 044084 171 IVN--GFSKRRAYWAAVKVYEQLISQGCIPGQVTYASI---I----------NAYCRIGLYSKAEKVFIEMQQK---GFD 232 (343)
Q Consensus 171 l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l---l----------~~~~~~~~~~~a~~~~~~~~~~---~~~ 232 (343)
.++ ++.-.++.+.+...|++....+ |+...-..+ . +-..+.|++..|.+.+.+.+.. +..
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 333 2333566666776666666542 443322111 1 1123455566666666555543 223
Q ss_pred cChhhHHHHHHHHHccCChHHHHHHHHHHh
Q 044084 233 KCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
|+...|.....+..+.|+..+|+.--+...
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 344445555555555566665555554444
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=0.00022 Score=43.80 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=21.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 044084 108 IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKN 158 (343)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (343)
.|++++|.++|+.+....+. +..++..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444443322 344444444444444444444444444443
No 182
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.67 E-value=0.015 Score=44.71 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=24.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCchH----HHHHHHHHHHhcccChh
Q 044084 241 MVAMYGKTGRIRDAMRLVAKMKPKGCEPNV----WIYNSLMDMHGRAKNLR 287 (343)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~ 287 (343)
+...|.+.|.+..|..-++.+++. -|+. .....++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 455667777777777777777664 2222 23344555555555444
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=0.00054 Score=42.21 Aligned_cols=56 Identities=25% Similarity=0.261 Sum_probs=21.2
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-cHhHHHHHHHH
Q 044084 99 ASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG-MVEKTLEVVES 155 (343)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~ 155 (343)
..+...+...|++++|+..|++..+.... +...|..+..+|...| ++++|++.+++
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33333333334444444444433333221 2333333333344433 33444443333
No 184
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.027 Score=46.68 Aligned_cols=254 Identities=10% Similarity=-0.038 Sum_probs=145.6
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++..|+..+...++..+ .+...|..-...+...|++++|.--.+.-.+.. +.........-+++...++..+|.+
T Consensus 64 ~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k----d~~~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLK----DGFSKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred hHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecC----CCccccccchhhhhhhhHHHHHHHH
Confidence 35677888888887754 345566666667777777777765554432221 1111223333333333344444433
Q ss_pred HHH---------------HHHhcCC-CCChHhHHHHH-HHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044084 82 FFR---------------DMKEKGI-LEDPSVYASLI-CSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144 (343)
Q Consensus 82 ~~~---------------~~~~~~~-~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (343)
.++ ....... +|.-.++..+- .++.-.++.++|.++--...+.... +......-..++.-.+
T Consensus 139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~ 217 (486)
T KOG0550|consen 139 KLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYND 217 (486)
T ss_pred HhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccccccc
Confidence 332 1111111 12223343332 3455678888888877666664322 3322222233444567
Q ss_pred cHhHHHHHHHHHHhcCCCCchhh-------------HHHHHHHHhcCCcHHHHHHHHHHHHHc---CCCCCHhhHHHHHH
Q 044084 145 MVEKTLEVVESMKNAELNISDCI-------------SCVIVNGFSKRRAYWAAVKVYEQLISQ---GCIPGQVTYASIIN 208 (343)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~ll~ 208 (343)
+.+.|...|++....++ +... +..-..-..+.|.+..|.+.|.+.+.. +..|+...|.....
T Consensus 218 ~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 218 NADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred chHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 78888888888776553 2111 111123345678899999999988764 34555666777777
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 209 AYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
+..+.|+.++|+.--++..+.+ +.-...+..-..++...++|++|.+-|++..+.
T Consensus 296 v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7788899999988887777653 111223333345566677888888888877654
No 185
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.0013 Score=51.71 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=53.9
Q ss_pred hcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHH
Q 044084 106 ASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAV 185 (343)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (343)
.+.+++.+|+..|.+.++..+. |.+.|..-..+|++.|.++.|++--+.....+. -...+|..|-.+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHHHH
Confidence 3455566666666665554432 555555555566666666666555555554443 23345555556666666666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHH
Q 044084 186 KVYEQLISQGCIPGQVTYASIIN 208 (343)
Q Consensus 186 ~~~~~~~~~~~~p~~~~~~~ll~ 208 (343)
+.|++..+. .|+..+|..=++
T Consensus 170 ~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHhhhcc--CCCcHHHHHHHH
Confidence 665555543 455555544443
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.58 E-value=0.00057 Score=41.52 Aligned_cols=57 Identities=25% Similarity=0.388 Sum_probs=34.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK 89 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 89 (343)
...+.+.|++++|.+.|+++.+.. |.+...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD----PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566666666666666665554 333566666666666666666666666666553
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.58 E-value=0.00061 Score=41.38 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=21.7
Q ss_pred HHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044084 139 MYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192 (343)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (343)
.+.+.|++++|.+.|+.+.+..+ -+...+..+..++...|++++|...|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444332 233334444444444444444444444443
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.57 E-value=0.0085 Score=41.28 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=7.7
Q ss_pred HHHHhcCcHhHHHHHHHHH
Q 044084 138 LMYIEEGMVEKTLEVVESM 156 (343)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~ 156 (343)
..+...|++++|..++++.
T Consensus 46 stlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 46 STLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3333444444444444433
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.011 Score=40.83 Aligned_cols=91 Identities=21% Similarity=0.177 Sum_probs=45.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC----hHhHHHHHHH
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILED----PSVYASLICS 104 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 104 (343)
..++-..|+.++|..+|++....|.... .-...+..+.+.+...|++++|+.++++..... |+ ......+..+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 3445555666666666666666554432 112445555566666666666666666655431 22 1111122234
Q ss_pred HhcccCHHHHHHHHHHHH
Q 044084 105 FASIAEVKVAEELFKEAE 122 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~ 122 (343)
+...|+.++|.+.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 445566666655554433
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.013 Score=46.49 Aligned_cols=120 Identities=12% Similarity=-0.008 Sum_probs=83.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC---CcHHHHHHHHHHHHHcC
Q 044084 119 KEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR---RAYWAAVKVYEQLISQG 195 (343)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 195 (343)
+.-....+. |...|-.|...|...|+.+.|..-|....+... ++...+..+..++... ....++..+|+++....
T Consensus 146 e~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 146 ETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 333344433 788899999999999999999999988877654 4555666666555443 34567888888888764
Q ss_pred CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHH
Q 044084 196 CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVA 243 (343)
Q Consensus 196 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (343)
+-+..+...+...+...|++.+|...|+.|.+.. +| ...+..+|.
T Consensus 224 -~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~-~~~rr~~ie 268 (287)
T COG4235 224 -PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PA-DDPRRSLIE 268 (287)
T ss_pred -CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CC-CCchHHHHH
Confidence 3455566666777888899999999999988875 33 333444444
No 191
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.059 Score=48.20 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFR 84 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~ 84 (343)
..|..+.+-....|+++-|..+++
T Consensus 508 iSy~~iA~~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 508 ISYAAIARRAYQEGRFELARKLLE 531 (829)
T ss_pred eeHHHHHHHHHhcCcHHHHHHHHh
Confidence 345555555555666666655554
No 192
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0019 Score=50.91 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=67.5
Q ss_pred HHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHh
Q 044084 68 DSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVE 147 (343)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (343)
+-+.+.+++.+|+..|.+.++... -|.+.|..-..+|++.|.++.|.+-.+..+..... ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 345567788888888888877642 36667777778888888888888877777765432 4677888888888888888
Q ss_pred HHHHHHHHHHhcC
Q 044084 148 KTLEVVESMKNAE 160 (343)
Q Consensus 148 ~a~~~~~~~~~~~ 160 (343)
+|++.|++..+.+
T Consensus 167 ~A~~aykKaLeld 179 (304)
T KOG0553|consen 167 EAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHhhhccC
Confidence 8888888877655
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.51 E-value=0.0011 Score=40.75 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC-cHHHHHHHHHHHHHc
Q 044084 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR-AYWAAVKVYEQLISQ 194 (343)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 194 (343)
+..+|..+...+...|++++|+..|++..+.++ .+...|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 455677777777777777777777777776654 35556677777777777 677777777766553
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.48 E-value=0.018 Score=50.52 Aligned_cols=260 Identities=14% Similarity=0.130 Sum_probs=146.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc--------hHHHHHHHHHHhhccCc--HHHHHHHHHHHHhc
Q 044084 20 LDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPS--------STHMYKILCDSLGKSGR--AFEILKFFRDMKEK 89 (343)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~ 89 (343)
|....+.+-+..|...|.+++|.++-- .|+..+.. ..--++..=.+|.+..+ +-+.+.-+++++++
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iac----lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIAC----LGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccc----cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 344445555667778888887765321 11111000 01123333345555443 33444556677777
Q ss_pred CCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHH------------HHHH
Q 044084 90 GILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVV------------ESMK 157 (343)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------~~~~ 157 (343)
|-.|+... +...|+-.|++.+|.++|.+ .|.+ +..+.+|.....+|.|.+++ ++-.
T Consensus 630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 630 GETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred CCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 87787643 34556677888888888764 3433 22334444444444444443 2211
Q ss_pred h--cCCCCchhhHHHHHHHHhcCCcHHHHHHHHHH------HHHcCC---CCCHhhHHHHHHHHHccCChhHHHHHHHHH
Q 044084 158 N--AELNISDCISCVIVNGFSKRRAYWAAVKVYEQ------LISQGC---IPGQVTYASIINAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 158 ~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 226 (343)
+ .+++.. .+-...+...|+.++|..+.-+ +.+-+- ..+..+...+...+.+...+.-|.++|..|
T Consensus 698 ~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 698 DWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 1 111111 1233444556666666554321 111111 223445555555556677788888888877
Q ss_pred HHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHH
Q 044084 227 QQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFD 306 (343)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~ 306 (343)
-.. .++++.+...+++++|..+-++..+. .||. |....+-++...++++|. .+|.+.|+-.
T Consensus 774 gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqwLAE~DrFeEAq------kAfhkAGr~~ 834 (1081)
T KOG1538|consen 774 GDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQWLAENDRFEEAQ------KAFHKAGRQR 834 (1081)
T ss_pred ccH---------HHHhhheeecccchHhHhhhhhCccc--cccc--cchHHHHhhhhhhHHHHH------HHHHHhcchH
Confidence 553 36778888999999999998887764 4444 333344455566666654 6888999999
Q ss_pred HHHHHHHHHHhC
Q 044084 307 MCVKFYNEFRMN 318 (343)
Q Consensus 307 ~a~~~~~~m~~~ 318 (343)
+|.++++++...
T Consensus 835 EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 835 EAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHHhhhh
Confidence 999999998554
No 195
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.40 E-value=0.017 Score=41.77 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=48.3
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH-----hcCCCCchhh
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMK-----NAELNISDCI 167 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 167 (343)
+...++..+...|+++.|..+.+.+....+- +...|..+|.+|...|+...|.++|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3555667777888888888888888887643 78888888888888888888888888764 3577777654
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.014 Score=46.39 Aligned_cols=125 Identities=10% Similarity=-0.028 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc---CChhHHHHHHHH
Q 044084 149 TLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI---GLYSKAEKVFIE 225 (343)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~ 225 (343)
...-++.-.+.++ -|...|-.|...|...|+...|..-|.+..+.. .++...+..+..++... ..-.++..+|++
T Consensus 141 l~a~Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 141 LIARLETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 3333444444554 577889999999999999999999999998863 34555555555554432 346788999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 044084 226 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278 (343)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 278 (343)
+.+.+ +-|+.+...|...+...|++.+|...|+.|.+. -|....+..+++
T Consensus 219 al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 219 ALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 99986 557888888999999999999999999999986 333344444444
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.028 Score=41.31 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC---CCCCHhhHH
Q 044084 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG---CIPGQVTYA 204 (343)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~ 204 (343)
|+......|.....+.|+..+|...|++...--..-|......+.++....+++..|...++++.+.+ -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 45555555556666666666666666655543333444445555555555666666666666555542 1222 233
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHH
Q 044084 205 SIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDA 254 (343)
Q Consensus 205 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (343)
.+.+.+...|++..|+.-|+.....- |+...-......+.++|+.+++
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHH
Confidence 34455555666666666666555542 3332222223334455544443
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.002 Score=46.58 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHH-----cCCCCCHhhH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLIS-----QGCIPGQVTY 203 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~ 203 (343)
.+...++..+...|++++|..+.+.+...++ .+...|..+|.+|...|+...|.++|+++.+ .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455667777788888888888888887776 5777888888888888888888888887653 3777776553
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.049 Score=42.45 Aligned_cols=130 Identities=8% Similarity=0.086 Sum_probs=65.9
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHH-----HH
Q 044084 99 ASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVI-----VN 173 (343)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~ 173 (343)
+.++..+.-.|.+.-...++.+.++...+.++.....|++.-.+.|+.+.|...|++..+..-..+..+.+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3344555555555555666666666554555666666666666666666666666655443322333333322 22
Q ss_pred HHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 174 GFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
.|.-.+++..|...+++..... ..|....|.=.-+..-.|+...|.+.++.+.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444556666666666555442 112222222111222235666666666666664
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.31 E-value=0.004 Score=51.40 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=65.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHH--Hhc--CCC-CChHhHHHHHHH
Q 044084 30 EAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDM--KEK--GIL-EDPSVYASLICS 104 (343)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--~~~--~~~-~~~~~~~~l~~~ 104 (343)
.-+++.|+......+|+...+.|-..-..-..+|..|.++|.-.+++++|+++...= +.. |-+ -...+...|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 457888888888899988888775443333466777778888888888887764321 111 100 112223334444
Q ss_pred HhcccCHHHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHhcCc
Q 044084 105 FASIAEVKVAEELFKE----AEEKGML-RDLEVFLKLVLMYIEEGM 145 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~ 145 (343)
+--.|.+++|.-...+ ..+.|-. .....+..|...|...|+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 5555667766654332 2222211 124445556666765553
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.31 E-value=0.012 Score=47.04 Aligned_cols=97 Identities=6% Similarity=-0.004 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc--hhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC--CCCCHhhHHHHHH
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNIS--DCISCVIVNGFSKRRAYWAAVKVYEQLISQG--CIPGQVTYASIIN 208 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~ 208 (343)
|......+.+.|++++|...|+.+.+..+... ...+-.+..+|...|++++|...|+.+.+.- -+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444445566666666666555432111 1234455555566666666666666665431 0111223333444
Q ss_pred HHHccCChhHHHHHHHHHHHc
Q 044084 209 AYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~ 229 (343)
.+...|+.++|..+|+.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 455566666666666666554
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.28 E-value=0.017 Score=46.09 Aligned_cols=98 Identities=13% Similarity=-0.004 Sum_probs=56.6
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC--CchhhHHHHH
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKGMLRD--LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN--ISDCISCVIV 172 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 172 (343)
.|...+....+.|++++|...|+.+.+.-+... +..+..+...|...|++++|...|+.+....+. .....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555667777777776666543211 345556666777777777777777776643321 1122333445
Q ss_pred HHHhcCCcHHHHHHHHHHHHHc
Q 044084 173 NGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
.++...|+.+.|..+|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5566667777777777776665
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.23 E-value=0.095 Score=43.79 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=75.7
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKG---MLRDLEVFLKLVLMYIE---EGMVEKTLEVVESMKNAELNISDCISCVIVNGF 175 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (343)
+-+|-...+++...++.+.+.... +.-+..+-....-++.+ .|+.++|++++..+......++..+|..+.+.|
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 334555555555555555554431 11122222233333444 555555555555543333334444555444433
Q ss_pred hc---------CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC-h---hHHHHHH---H-HHHHcC---CCcCh
Q 044084 176 SK---------RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGL-Y---SKAEKVF---I-EMQQKG---FDKCV 235 (343)
Q Consensus 176 ~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~---~~a~~~~---~-~~~~~~---~~~~~ 235 (343)
-. ....++|...|.+.-+. .|+.++=-.++..+...|. . .+..++- . .+.+.| -..+-
T Consensus 228 KD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 228 KDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 21 12356666666665544 2443332222222222222 1 1222222 1 111222 12344
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 236 VAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
..+.+++.+..-.|+.++|.+..++|...
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 55667777888888888888888888765
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.21 E-value=0.0028 Score=39.47 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=37.3
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 208 NAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
..|.+.+++++|.++++.+...+ |.++..+.....++.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566677777777777776664 445666666666777777777777777776654
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.14 E-value=0.0075 Score=41.98 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=37.7
Q ss_pred CCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC-CCCchHHHHHHHHH
Q 044084 231 FDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK-GCEPNVWIYNSLMD 278 (343)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~ 278 (343)
..|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4577888888888888888888888888887754 66667778887776
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.11 E-value=0.056 Score=48.05 Aligned_cols=28 Identities=7% Similarity=-0.043 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMK 87 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~ 87 (343)
...|..|.......-.++.|...|-+..
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 3677777776666666666666665543
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.11 E-value=0.0095 Score=41.47 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 044084 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIIN 208 (343)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 208 (343)
|..++..++.++++.|+.+....+++..= |+.++.. ...+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34556666667777777666666665432 1111100 00000 1112245688888888888
Q ss_pred HHHccCChhHHHHHHHHHHHc-CCCcChhhHHHHHHHHH
Q 044084 209 AYCRIGLYSKAEKVFIEMQQK-GFDKCVVAYSSMVAMYG 246 (343)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 246 (343)
+|+..|++..|.++.+.+.+. +++.+..+|..|+.=..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888887754 56666777877776433
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.088 Score=41.12 Aligned_cols=145 Identities=10% Similarity=0.071 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHH---
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASII--- 207 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll--- 207 (343)
.+.+.++..+.-.+.+.-....+.+..+.+.+.++.....+.+.-.+.|+.+.|...|++..+..-..+..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556777777788899999999999988877788888889999999999999999999887654345555554443
Q ss_pred --HHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 044084 208 --NAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278 (343)
Q Consensus 208 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 278 (343)
..|.-.+++..|...+.++...+ +.|+...|.-.-+..-.|+..+|.+.++.|.+. .|...+-++++-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLF 327 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHH
Confidence 34566788999999998888876 456666666555666688999999999999986 566666555544
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.10 E-value=0.0052 Score=38.20 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=25.4
Q ss_pred HHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 104 SFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
.+.+.++++.|.++++.+...++. ++..+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444444444444444332 3444444444444444444444444444433
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.09 E-value=0.066 Score=39.46 Aligned_cols=134 Identities=14% Similarity=0.123 Sum_probs=93.7
Q ss_pred CCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC-CchhhHH
Q 044084 91 ILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN-ISDCISC 169 (343)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 169 (343)
..|+...--.|..+....|+..+|...|++....-+.-|....-.+.++....+++..|...++++.+.++. -+..+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 456666666778888888888888888888877555557888888888888888888888888887765421 1222455
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHH
Q 044084 170 VIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 226 (343)
.+.+.+...|.+.+|..-|+..... -|+...-......+.+.|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 6778888888888888888888876 455444333344456667666655444433
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.12 Score=42.55 Aligned_cols=122 Identities=13% Similarity=0.149 Sum_probs=85.2
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 044084 167 ISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246 (343)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (343)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++-.. +-.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45556777777888888887766653 47888888889999999998887765432 223578888899999
Q ss_pred ccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 044084 247 KTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNE 314 (343)
Q Consensus 247 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~ 314 (343)
+.|+..+|..++.++. +..-+..|.+.|++.+|. ....+.++.+.-..+.+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~------~~A~~~kd~~~L~~i~~~ 300 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAA------QEAFKEKDIDLLKQILKR 300 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHH------HHHHHcCCHHHHHHHHHH
Confidence 9999888888877622 134567778888877764 445556665544444443
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.05 E-value=0.0026 Score=40.23 Aligned_cols=66 Identities=12% Similarity=0.282 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC-CchHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 044084 23 GCYCQIMEAFYKIGDSEKVAALFLECESRK--LDLT-PSSTHMYKILCDSLGKSGRAFEILKFFRDMKE 88 (343)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 88 (343)
.+|+.+...|.+.|++++|+..|++..+.. ..++ +....+++.+...+...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467788888888888888888888765431 1111 22356777788888888888888888877643
No 213
>PRK15331 chaperone protein SicA; Provisional
Probab=97.04 E-value=0.058 Score=39.07 Aligned_cols=87 Identities=10% Similarity=-0.040 Sum_probs=55.9
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (343)
+...|++++|..+|..+.-.++. +...|..|..++-..+++++|+..|......+. -|...+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 34567777777777777665543 566667777777777777777777766544332 2223334456667777777777
Q ss_pred HHHHHHHHH
Q 044084 185 VKVYEQLIS 193 (343)
Q Consensus 185 ~~~~~~~~~ 193 (343)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777776665
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.02 E-value=0.16 Score=42.56 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcC---CCCchhhHHHHHHHHhc---CCcHHHHHHHHHHHHHcCCCCCHhhHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAE---LNISDCISCVIVNGFSK---RRAYWAAVKVYEQLISQGCIPGQVTYA 204 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~ 204 (343)
.+...++-+|-...+++..+++++.+.... +.-....--...-++.+ .|+.++|.+++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 333445555666666666666666665442 11111112223334444 566666666666644444455566666
Q ss_pred HHHHHH
Q 044084 205 SIINAY 210 (343)
Q Consensus 205 ~ll~~~ 210 (343)
.+.+.|
T Consensus 222 L~GRIy 227 (374)
T PF13281_consen 222 LLGRIY 227 (374)
T ss_pred HHHHHH
Confidence 555554
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.95 E-value=0.037 Score=45.99 Aligned_cols=40 Identities=23% Similarity=0.435 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 044084 5 SKLHYYEKMKSAGIVLD----SGCYCQIMEAFYKIGDSEKVAALF 45 (343)
Q Consensus 5 ~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 45 (343)
..+.+|+..++.|.. | ..+|..|..+|.-.+++++|++..
T Consensus 35 aGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 35 AGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred hhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 345566666665532 2 223455555555555666665543
No 216
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.94 E-value=0.074 Score=43.32 Aligned_cols=87 Identities=17% Similarity=0.225 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCc--
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYK--IG----DSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGR-- 75 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-- 75 (343)
++.+.+++.|.+.|..-+..+|-+....... .. ...+|..+|+.|++...-.+.+....+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666665555444432222222 11 134555666666555544443333444444333 2222
Q ss_pred --HHHHHHHHHHHHhcCCC
Q 044084 76 --AFEILKFFRDMKEKGIL 92 (343)
Q Consensus 76 --~~~a~~~~~~~~~~~~~ 92 (343)
.+.+..+|+.+...|..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~ 175 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFK 175 (297)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 23344455555554443
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.89 E-value=0.067 Score=38.75 Aligned_cols=90 Identities=16% Similarity=0.048 Sum_probs=55.7
Q ss_pred HHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 044084 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMV 146 (343)
Q Consensus 67 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (343)
..-+...|++++|..+|+-+...+.. +..-|..|..++-..++++.|...|......+.. |+..+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCH
Confidence 34445667777777777766654422 4444455555555667777777777666554432 444455566777777777
Q ss_pred hHHHHHHHHHHh
Q 044084 147 EKTLEVVESMKN 158 (343)
Q Consensus 147 ~~a~~~~~~~~~ 158 (343)
+.|+..|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777777776665
No 218
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.83 E-value=0.2 Score=40.72 Aligned_cols=166 Identities=16% Similarity=0.119 Sum_probs=91.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHhhccC-cHHHHHHHHHHHHhc--------CCCCCh--
Q 044084 32 FYKIGDSEKVAALFLECESRKLDLTPSS-----THMYKILCDSLGKSG-RAFEILKFFRDMKEK--------GILEDP-- 95 (343)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~-- 95 (343)
..+.|+++.|..++.+........+|.. ...|+. .......+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 3467899999999988866543333332 122333 33334455 788887777765432 112222
Q ss_pred ---HhHHHHHHHHhcccCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHH
Q 044084 96 ---SVYASLICSFASIAEVK---VAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISC 169 (343)
Q Consensus 96 ---~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (343)
.++..++.++...+..+ +|..+++.+.+.... .+.++..-+..+.+.++.+.+.+++.+|...-. .....+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHH
Confidence 34555667777666544 445555555443322 345555556666667888888888888876532 1223454
Q ss_pred HHHHHHhc--CCcHHHHHHHHHHHHHcCCCCCH
Q 044084 170 VIVNGFSK--RRAYWAAVKVYEQLISQGCIPGQ 200 (343)
Q Consensus 170 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~p~~ 200 (343)
.++..+.. ......+...++.+....+.|..
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44444421 23344556666665555444444
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.1 Score=43.39 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=56.3
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHh
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFS 176 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (343)
++..+.-++.+.+++..|+....+.+..+. +|....-.-..++...|+++.|+..|+++.+..+ .|..+-+.++.+-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 345555666677777777777777666654 3566666666777777777777777777766554 23333344444333
Q ss_pred cCCcH-HHHHHHHHHHHHc
Q 044084 177 KRRAY-WAAVKVYEQLISQ 194 (343)
Q Consensus 177 ~~~~~-~~a~~~~~~~~~~ 194 (343)
+.... +...++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 33332 3345666666543
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.74 E-value=0.0059 Score=38.56 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhc----CC-CCc-hhhHHHHHHHHhcCCcHHHHHHHHHHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNA----EL-NIS-DCISCVIVNGFSKRRAYWAAVKVYEQL 191 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (343)
.+++.+...|...|++++|+..|++..+. |. .|. ..++..+..++...|++++|.+++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555555555555555554321 10 011 223444455555555555555555543
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.48 Score=42.76 Aligned_cols=265 Identities=13% Similarity=0.085 Sum_probs=141.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLT-PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYA 99 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (343)
+..+|..+.......|+++-|..+++.=...+.... --+..-+...+.-+.+.|+.+-...++-.+... .+...|.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHH
Confidence 445688888888899999999988764322221110 000122334445555566666665555555442 1111111
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHH--HHH----hcCCCCchhhHHHHHH
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVE--SMK----NAELNISDCISCVIVN 173 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~----~~~~~~~~~~~~~l~~ 173 (343)
. ...+...|..+|.+..+..-. . .+-..|-. ++-.++...|. ... ..+..|+ ......
T Consensus 583 ~------~l~~~p~a~~lY~~~~r~~~~---~---~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~ 646 (829)
T KOG2280|consen 583 M------TLRNQPLALSLYRQFMRHQDR---A---TLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA---LKTAAN 646 (829)
T ss_pred H------HHHhchhhhHHHHHHHHhhch---h---hhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---HHHHHH
Confidence 1 122345556666655543211 1 11122222 22222222211 100 1122222 222333
Q ss_pred HHhcCCc----------HHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHH
Q 044084 174 GFSKRRA----------YWAAVKVYEQLISQ-GCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242 (343)
Q Consensus 174 ~~~~~~~----------~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (343)
.+.+... ..+-+++.+.+... |......+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKL 722 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHH
Confidence 3333322 11222223333322 333444555656666777788888887765543 36777888888
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh-------HHHHHHHHHhcCCHHHHHHHHHH
Q 044084 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK-------YTTVISAYNMAREFDMCVKFYNE 314 (343)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-------~~~l~~~~~~~g~~~~a~~~~~~ 314 (343)
.+++..+++++.+++-+.++. +.-|.-++.+|.+.|+.++|.+ +...+.+|.+.|++.+|.++--+
T Consensus 723 ~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHHH
Confidence 888888888887777666552 3334557788888888888888 44577888888888888776444
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.61 E-value=0.33 Score=40.38 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=27.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHcc-CChHHHHHHHHHHhh
Q 044084 203 YASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT-GRIRDAMRLVAKMKP 263 (343)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~ 263 (343)
...+..+....|++..|..--+..... .|....|..|.+.-... |+-.++...+.+...
T Consensus 332 ~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 332 SLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 333444444455555544443333332 34455555555443333 555555555555544
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.59 E-value=0.14 Score=43.62 Aligned_cols=66 Identities=24% Similarity=0.197 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCCh----HhHHHHHHHHhcccCHHHHHHHHHHHHHc
Q 044084 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDP----SVYASLICSFASIAEVKVAEELFKEAEEK 124 (343)
Q Consensus 57 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (343)
|.....|+.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344667777777777777777777777777665 3442 24666777777777777777777777664
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.56 E-value=0.095 Score=45.36 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=102.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (343)
.+...-.++++++.++...- .+.|.-+ ....+.+++.+-+.|.++.|+++.+.-. .-.....+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~---~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~l 331 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS---NLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQL 331 (443)
T ss_dssp HHHHHHTT-HHH-----HHH---HTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHC
T ss_pred HHHHHHcCChhhhhhhhhhh---hhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhc
Confidence 34455678888877666411 1111111 3467888888888999999988764321 123455678
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHH
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (343)
|+++.|.++.++. .+...|..|.....+.|+++-|.+.|.+..+ |..++-.|...|+.+...++.
T Consensus 332 g~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 332 GNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp T-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHH
T ss_pred CCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHH
Confidence 8888887765432 3788999999999999999999999988753 556777778888888888888
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHH
Q 044084 189 EQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIE 225 (343)
Q Consensus 189 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 225 (343)
+.....| -++....++.-.|+.+++.+++.+
T Consensus 397 ~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 397 KIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777665 255556666667888888877754
No 225
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.52 E-value=0.57 Score=42.10 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHH
Q 044084 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190 (343)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (343)
+....-.+..++...|.-++|.+.|-+... |. +-+..|...++|.+|.++-++
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 455556667777777777777766644321 21 234556666667666666554
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.48 E-value=0.34 Score=42.58 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=109.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhc-CCCCCh-----HhHHHHHHHHhc----ccCHHHHHHHHHHHHHcCCCCCHH
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEK-GILEDP-----SVYASLICSFAS----IAEVKVAEELFKEAEEKGMLRDLE 131 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 131 (343)
....++...+-.|+-+.+++.+.+..+. ++.-.. -.|...+..++. ..+.+.+.++++.+.+.- |+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcH
Confidence 3778888888889999998888887664 333222 235555554443 456788999999888864 4544
Q ss_pred HHH-HHHHHHHhcCcHhHHHHHHHHHHhcC---CCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 044084 132 VFL-KLVLMYIEEGMVEKTLEVVESMKNAE---LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASII 207 (343)
Q Consensus 132 ~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 207 (343)
.|. .-.+.+...|++++|++.|++..... .+.....+--+..++....+|++|.+.|..+.+.+ .-+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 443 34566777899999999998754311 12223344456677788899999999999998864 33444555443
Q ss_pred HH-HHccCCh-------hHHHHHHHHHHHc
Q 044084 208 NA-YCRIGLY-------SKAEKVFIEMQQK 229 (343)
Q Consensus 208 ~~-~~~~~~~-------~~a~~~~~~~~~~ 229 (343)
.+ +...|+. ++|.++|.++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 33 3456666 8888888877643
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.42 E-value=0.26 Score=41.71 Aligned_cols=145 Identities=13% Similarity=0.084 Sum_probs=72.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcC-CCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKG-ILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (343)
+|...++...+..-.+.|..+|-+..+.+ +.+++..+++++.-++ .|+...|..+|+.-...-. -++..-+..+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~-d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFP-DSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence 44445555555555666666666666655 4455555666555443 3455566666654333221 1233334445555
Q ss_pred HhcCcHhHHHHHHHHHHhcCCC-CchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 044084 141 IEEGMVEKTLEVVESMKNAELN-ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAY 210 (343)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 210 (343)
...++-+.|..+|+.....--. .-...|..+|+.-..-|+...+..+=++|... .|-..+.....+-|
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 5666666666666633221000 01224666666666666666665555555543 34444444333333
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.41 E-value=0.16 Score=43.25 Aligned_cols=65 Identities=15% Similarity=-0.017 Sum_probs=47.0
Q ss_pred ChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 94 DPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL---EVFLKLVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
+...++.+..+|.+.|++++|...|++.++..+. +. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456777777778888888888888887775533 22 35777788888888888888888877764
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.38 E-value=0.22 Score=35.62 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=19.2
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (343)
++..+...+........++.+...+. .+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444445555555555444432 344445555555544
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.37 E-value=0.055 Score=42.63 Aligned_cols=88 Identities=18% Similarity=0.343 Sum_probs=57.4
Q ss_pred CChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHH
Q 044084 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAG 328 (343)
Q Consensus 249 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 328 (343)
+.++=....++.|.+.|+.-|..+|..|+..+-+..-...-. +....-.|- .+-+-+++++++|...|+.||..+-.
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv-fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~ 162 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV-FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIED 162 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH-HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHH
Confidence 344444555666777777777777777777665543322111 112222222 23345899999999999999999999
Q ss_pred HHHHHHhcccc
Q 044084 329 IMVGVFSKLSQ 339 (343)
Q Consensus 329 ~l~~~~~~~g~ 339 (343)
.|+.++.+.|-
T Consensus 163 ~lvn~FGr~~~ 173 (406)
T KOG3941|consen 163 ILVNAFGRWNF 173 (406)
T ss_pred HHHHHhccccc
Confidence 99999988763
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.36 E-value=0.43 Score=38.80 Aligned_cols=161 Identities=14% Similarity=0.039 Sum_probs=97.6
Q ss_pred hccCcHHHHHHHHHHHHhcC--CCCChH------hHHHHHHHHhccc-CHHHHHHHHHHHHHc--------CCCCC----
Q 044084 71 GKSGRAFEILKFFRDMKEKG--ILEDPS------VYASLICSFASIA-EVKVAEELFKEAEEK--------GMLRD---- 129 (343)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---- 129 (343)
.+.|+.+.|...+.+..... ..|+.. .|+.-... ...+ +++.|...+++..+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999887643 223221 23333333 3445 888888777765543 12223
Q ss_pred -HHHHHHHHHHHHhcCcH---hHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHH
Q 044084 130 -LEVFLKLVLMYIEEGMV---EKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYAS 205 (343)
Q Consensus 130 -~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 205 (343)
..+...++.+|...+.. ++|.++++.+..... -....+..-+..+.+.++.+.+.+.+.+|...- .-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 34566778888887764 456666666654433 223455566777777899999999999999872 223445555
Q ss_pred HHHHH---HccCChhHHHHHHHHHHHcCCCcCh
Q 044084 206 IINAY---CRIGLYSKAEKVFIEMQQKGFDKCV 235 (343)
Q Consensus 206 ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (343)
++..+ .. ...+.+...++.+....+.|..
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 55554 33 3345566666666554444444
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.17 Score=41.13 Aligned_cols=156 Identities=11% Similarity=0.046 Sum_probs=98.3
Q ss_pred HhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCH--hhHHHHH--HHHHccCCh
Q 044084 141 IEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQ--VTYASII--NAYCRIGLY 216 (343)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ll--~~~~~~~~~ 216 (343)
...|+..+|-..++++.+.-+ .|...+...=.+|.-.|+.+.-...++++... ..||. .+|..-+ -++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 356777888888888876544 56666777777888888888888888887755 12333 2333323 334467888
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHH
Q 044084 217 SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVI 296 (343)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~ 296 (343)
++|++.-++..+.+ +.|...-.+....+--.|++.++.++..+-... .+ . ..++.+ . .|-...
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr---~--s~mlas---H-------NyWH~A 254 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WR---Q--SWMLAS---H-------NYWHTA 254 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hh---h--hhHHHh---h-------hhHHHH
Confidence 88888888877765 556667777777777788888887766554322 11 0 001100 0 133334
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 044084 297 SAYNMAREFDMCVKFYNEF 315 (343)
Q Consensus 297 ~~~~~~g~~~~a~~~~~~m 315 (343)
-.+...+.++.|+++|++-
T Consensus 255 l~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HhhhcccchhHHHHHHHHH
Confidence 4455667888888888753
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.091 Score=41.34 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=70.0
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC--CcChhhHHHHH
Q 044084 167 ISCVIVNGFSKRRAYWAAVKVYEQLISQG--CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGF--DKCVVAYSSMV 242 (343)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 242 (343)
.|+.-+..+ +.|++..|...|....+.. -.-....+-.|..++...|++++|..+|..+.+.-. +.-+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655544 5677888888888888762 112234566788888888999988888888877521 11245677777
Q ss_pred HHHHccCChHHHHHHHHHHhhC
Q 044084 243 AMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888899999998888876
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.27 E-value=0.25 Score=35.28 Aligned_cols=127 Identities=11% Similarity=0.130 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHc
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 247 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (343)
...++..+...+.+.....+++.+...+ ..+...++.++..|++.+ .++....+.. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 3456666666667777777777766665 245556666676666543 2222233221 1 123333445555555
Q ss_pred cCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCccHHH
Q 044084 248 TGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMA-REFDMCVKFYNEFRMNGGVIDRAM 326 (343)
Q Consensus 248 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~ 326 (343)
.+.++++..++.++.. +...+..+... ++++.|++.+++ .-++..
T Consensus 82 ~~l~~~~~~l~~k~~~----------------------------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~l 127 (140)
T smart00299 82 AKLYEEAVELYKKDGN----------------------------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPEL 127 (140)
T ss_pred cCcHHHHHHHHHhhcC----------------------------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHH
Confidence 5555555555554432 22223333333 667777777765 125567
Q ss_pred HHHHHHHHhc
Q 044084 327 AGIMVGVFSK 336 (343)
Q Consensus 327 ~~~l~~~~~~ 336 (343)
|..++..+..
T Consensus 128 w~~~~~~~l~ 137 (140)
T smart00299 128 WAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHc
Confidence 7777766543
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.17 Score=42.15 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=88.8
Q ss_pred HHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 044084 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMV 146 (343)
Q Consensus 67 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (343)
.+.+.+.|++..|..-|++.... + -+.+.-+.++...... .-..+++.|.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~-l------------~~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF-L------------EYRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH-h------------hccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence 44667788888888877776542 0 0111111122111111 2245667788888999999
Q ss_pred hHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-ccCC-hhHHHHHHH
Q 044084 147 EKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYC-RIGL-YSKAEKVFI 224 (343)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~-~~~a~~~~~ 224 (343)
..|++.-.+....+. .|.-..---..++...|+++.|+..|+++.+. .|+....+.=+..|. +..+ .+...++|.
T Consensus 274 ~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888776 56555556678888899999999999998886 566665555444443 3333 334467777
Q ss_pred HHHHc
Q 044084 225 EMQQK 229 (343)
Q Consensus 225 ~~~~~ 229 (343)
.|-..
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 77653
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.14 E-value=0.08 Score=41.76 Aligned_cols=105 Identities=20% Similarity=0.312 Sum_probs=66.7
Q ss_pred CCChHhHHHHHHHHhcc-----cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchh
Q 044084 92 LEDPSVYASLICSFASI-----AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDC 166 (343)
Q Consensus 92 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (343)
+.|-.+|-..+..+... +.++-.-..++.|.+.|+..|..+|+.|+..+-+-. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 44667777777666533 556777777888889999999999988888764321 11211
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 044084 167 ISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGL 215 (343)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 215 (343)
.+....-.|- .+-+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1222222221 2234567777777777777777777777777776654
No 237
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.02 E-value=0.58 Score=41.66 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHh--------
Q 044084 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQV-------- 201 (343)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-------- 201 (343)
..+...+..-+.+...+.-|-++|.+|-.. ..+++.....++|++|..+-+...+. .||++
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 344444455555666677778888777432 24566677788888888877776553 34432
Q ss_pred ---hHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 202 ---TYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 202 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
-|...-++|.+.|+-.+|.++++.+...
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1233445677777777777777776554
No 238
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.4 Score=35.05 Aligned_cols=140 Identities=11% Similarity=0.061 Sum_probs=100.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHh-HH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSV-YA 99 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~ 99 (343)
+...|..-++ +++.+..++|+.-|..+.+.|...-|. -..........+.|+...|...|++.-.....|-..- ..
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Ypv--LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPV--LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchH--HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 4445655554 456677899999999999888766543 4455566777889999999999999877654444331 11
Q ss_pred HH--HHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC
Q 044084 100 SL--ICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNI 163 (343)
Q Consensus 100 ~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (343)
.| .-.+...|.++.+....+.+-..+-+.-...-..|.-+-.+.|++.+|...|..+....-.|
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 11 12456788999998888887766655456667788888889999999999999987644333
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.92 E-value=0.92 Score=38.64 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 044084 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDM 86 (343)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 86 (343)
+++-+++++. +-|..+|-.|+.-+...+..++..+++++|...- |--..+|..-|++-...+++.....+|.+.
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf----p~~~~aw~ly~s~ELA~~df~svE~lf~rC 102 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF----PIMEHAWRLYMSGELARKDFRSVESLFGRC 102 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC----ccccHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 3455555543 4578899999999999999999999999995432 333478888888888888899999999888
Q ss_pred HhcCC
Q 044084 87 KEKGI 91 (343)
Q Consensus 87 ~~~~~ 91 (343)
+....
T Consensus 103 L~k~l 107 (660)
T COG5107 103 LKKSL 107 (660)
T ss_pred Hhhhc
Confidence 77543
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.91 E-value=0.2 Score=43.37 Aligned_cols=132 Identities=11% Similarity=0.091 Sum_probs=61.7
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (343)
..-.++++.+.++.+.-.-. +.......+.++..+.+.|..+.|+++...-. .-.....+.|+.+.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 33445566555554311100 00124445666666666666666666543321 122334456666666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 185 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
.++.++ .++...|..|.....+.|+++-|++.|.+... +..|+-.|.-.|+.+...++.+.....
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 655433 23455666666666666666666666654322 345555556666666555555554443
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.88 E-value=0.39 Score=34.03 Aligned_cols=83 Identities=12% Similarity=-0.005 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHH
Q 044084 26 CQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSF 105 (343)
Q Consensus 26 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (343)
-.-.....+.|++++|.+.|+.+..+-... +-...+-..|+.++.+.+++++|...+++..+........-|...+.++
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 333445567888888888888887764332 3345677778888888888888888888888865443344566666665
Q ss_pred hccc
Q 044084 106 ASIA 109 (343)
Q Consensus 106 ~~~~ 109 (343)
+...
T Consensus 93 ~~~~ 96 (142)
T PF13512_consen 93 SYYE 96 (142)
T ss_pred HHHH
Confidence 5443
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.85 E-value=0.37 Score=33.48 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=31.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCC
Q 044084 204 ASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGC 266 (343)
Q Consensus 204 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 266 (343)
...+.+....|+-+.-.++...+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334455555566666666665555432 44555555666666666666666666666655554
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.75 Score=36.87 Aligned_cols=122 Identities=14% Similarity=0.086 Sum_probs=69.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC
Q 044084 31 AFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE 110 (343)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (343)
.....|++.+|..+|+......... ...--.++.+|...|+.+.|..++..+....-.........-|..+.+...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 4556677777777777776654332 255666777777777777777777776544211112222222333444444
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 111 VKVAEELFKEAEEKGMLR-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
..+...+-.+.-.. | |...-..+...+...|+.+.|.+.+-.+...
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333333333332 3 5666666777777777777777766655543
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.79 E-value=0.27 Score=38.75 Aligned_cols=99 Identities=18% Similarity=0.130 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCC--CChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC-C-CHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGIL--EDPSVYASLICSFASIAEVKVAEELFKEAEEKGML-R-DLEVFLKL 136 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l 136 (343)
..|+.-+..+ +.|++..|...|....+.... -....+-.|..++...|+++.|..+|..+.+.-++ | -+..+-.|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3455544443 445566666666666654211 12233444666666666666666666666654322 1 24556666
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 137 VLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
..+..+.|+.++|..+|+++.+.-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHC
Confidence 666666666777777776666543
No 245
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.65 E-value=0.19 Score=40.22 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=55.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh-----CCCCchHHHHHHH
Q 044084 202 TYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP-----KGCEPNVWIYNSL 276 (343)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 276 (343)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566677777777777777777777765 55677777788888888887777777777654 4777777776666
Q ss_pred HHH
Q 044084 277 MDM 279 (343)
Q Consensus 277 ~~~ 279 (343)
.++
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 655
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.63 E-value=0.056 Score=29.57 Aligned_cols=27 Identities=11% Similarity=0.349 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044084 25 YCQIMEAFYKIGDSEKVAALFLECESR 51 (343)
Q Consensus 25 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 51 (343)
+..+...|.+.|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444445555555555555555555443
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.55 E-value=0.074 Score=29.08 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=9.3
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHh
Q 044084 65 ILCDSLGKSGRAFEILKFFRDMKE 88 (343)
Q Consensus 65 ~li~~~~~~~~~~~a~~~~~~~~~ 88 (343)
.+...|...|++++|.++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 248
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.64 Score=34.06 Aligned_cols=138 Identities=12% Similarity=0.146 Sum_probs=97.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChH-hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHH-HH--HH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPS-VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV-FL--KL 136 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~--~l 136 (343)
..|..-++. .+.+..++|+.-|..+...|...-+. .--.........|+...|...|+++-.....|-..- .. .-
T Consensus 60 d~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 566665554 46677999999999999887553322 222334556788999999999999988665554331 11 12
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCC
Q 044084 137 VLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPG 199 (343)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 199 (343)
.-.+...|.++....-.+-+...+-+.-...-.+|.-+-.+.|++..|.+.|..+......|-
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 234567899999998888887665544444566777788899999999999999987644454
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.51 E-value=0.91 Score=35.65 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=23.9
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHccCChhHHHHHHHH
Q 044084 172 VNGFSKRRAYWAAVKVYEQLISQGCIPG---QVTYASIINAYCRIGLYSKAEKVFIE 225 (343)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~ 225 (343)
.+.|.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|...|-.++|...-.-
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 34445555555555555555544 1111 12233344455555555555444333
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.47 E-value=0.52 Score=32.66 Aligned_cols=90 Identities=19% Similarity=0.200 Sum_probs=48.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc-CCCCChH---hHHHHHHHHh
Q 044084 31 AFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK-GILEDPS---VYASLICSFA 106 (343)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~---~~~~l~~~~~ 106 (343)
+++..|+++.|++.|.+....- |.....||.-..++.-+|+.++|++-+++..+. |.+ +.. .|..-...|-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~----P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA----PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc----ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHH
Confidence 4556666666666666654432 112356666666666666666666666666554 222 111 1222233444
Q ss_pred cccCHHHHHHHHHHHHHcC
Q 044084 107 SIAEVKVAEELFKEAEEKG 125 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~ 125 (343)
..|+-+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 5566666666665555544
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.42 E-value=0.26 Score=39.44 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=39.2
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCcChhhHHHH
Q 044084 167 ISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ-----KGFDKCVVAYSSM 241 (343)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 241 (343)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..++.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555555555555555555555442 33445555555555555555555555554443 2555555544444
Q ss_pred HHH
Q 044084 242 VAM 244 (343)
Q Consensus 242 ~~~ 244 (343)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 252
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.42 E-value=0.32 Score=36.36 Aligned_cols=64 Identities=13% Similarity=0.013 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCch--hhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISD--CISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
..+..+...|.+.|+.+.|++.|.++.+....+.. ..+-.+|+.....+++..+...+.+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45667778888888888888888887766543332 23556677777778888877777766543
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=1.2 Score=35.84 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=25.9
Q ss_pred hcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 044084 106 ASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
...|++..|..+|......... +...--.+..+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445555555555555544332 23444445555555555555555555543
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.27 E-value=1 Score=37.24 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=127.9
Q ss_pred hhhHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHHhCCCCCCCchHHHHHHHHHHhhccCcH
Q 044084 3 SQSKLHYYEKMKSA--GIVLDSGCYCQIMEAFYKIGDSEKVAALF----LECESRKLDLTPSSTHMYKILCDSLGKSGRA 76 (343)
Q Consensus 3 ~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 76 (343)
.++|+..+..-..+ +...-..+|..+.++.++.|.+++++..- +...+.. ....-.++|..+.+++-+.-++
T Consensus 22 ~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~--ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 22 TEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE--DSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555544432 11112345667778888888888766532 1111111 0011135566666666666666
Q ss_pred HHHHHHHHHHHhc-CCCCC---hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCcHh
Q 044084 77 FEILKFFRDMKEK-GILED---PSVYASLICSFASIAEVKVAEELFKEAEEKGM-----LRDLEVFLKLVLMYIEEGMVE 147 (343)
Q Consensus 77 ~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~ 147 (343)
.+++.+-..-... |..|- -...-++..++...+.++.+++.|+...+... .....++..|...|.+..|++
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYE 179 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhh
Confidence 6666665554432 22221 11233455677777888999988888765321 123567889999999999999
Q ss_pred HHHHHHHHHHh----cCCCCchhhHHH-----HHHHHhcCCcHHHHHHHHHHHHH----cCCCC-CHhhHHHHHHHHHcc
Q 044084 148 KTLEVVESMKN----AELNISDCISCV-----IVNGFSKRRAYWAAVKVYEQLIS----QGCIP-GQVTYASIINAYCRI 213 (343)
Q Consensus 148 ~a~~~~~~~~~----~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~----~~~~p-~~~~~~~ll~~~~~~ 213 (343)
+|.-+..+..+ .++..-..-|.. |.-++...|....|.+.-++..+ .|-.| -......+.+.|-..
T Consensus 180 Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~ 259 (518)
T KOG1941|consen 180 KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSR 259 (518)
T ss_pred HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Confidence 98877655432 233211122332 34456667777777777666543 33222 123344566778888
Q ss_pred CChhHHHHHHHHHH
Q 044084 214 GLYSKAEKVFIEMQ 227 (343)
Q Consensus 214 ~~~~~a~~~~~~~~ 227 (343)
|+.+.|+.-++...
T Consensus 260 gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 260 GDLERAFRRYEQAM 273 (518)
T ss_pred ccHhHHHHHHHHHH
Confidence 99888887776644
No 255
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.23 E-value=0.25 Score=36.88 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 044084 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDM 86 (343)
Q Consensus 25 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 86 (343)
+..+...|.+.|+.+.|.+.|.++.+....+. .....+-.+|+.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~-~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPG-HKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444445555555555555544444332222 11233444444444444444444444443
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.67 Score=42.48 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHh
Q 044084 27 QIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFA 106 (343)
Q Consensus 27 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (343)
.-+..+.+...++-|..+-+ ..+.+++ ..........+-+.+.|++++|...|-+-... +.|. .++.-|.
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk---~~~~d~d-~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAK---SQHLDED-TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHH---hcCCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 34444555555555555432 2232222 00122223334455667777777666554432 2221 2445555
Q ss_pred cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 044084 107 SIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
........-..++.+.+.|+. +...-..|+.+|.+.++.++-.+..+...
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 666666666667777777764 55566667777777776666555554443
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.22 E-value=0.72 Score=32.72 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 134 LKLVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
-.|+.+|.+.+++++|...+++..+.
T Consensus 51 L~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 51 LDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33444444444444444444444433
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=0.75 Score=42.19 Aligned_cols=152 Identities=15% Similarity=0.116 Sum_probs=91.3
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKGMLRD--LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGF 175 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (343)
...-+..+.+...++.|..+-+ ..+..++ ..........+.+.|++++|...|-+....- .| ..+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHh
Confidence 4455666666666776666543 3333222 2223333445567888888888776654321 12 2456666
Q ss_pred hcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHH
Q 044084 176 SKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAM 255 (343)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (343)
........-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777777778888888888753 44445678888888888888766655443 2211 112345566666777777776
Q ss_pred HHHHHHh
Q 044084 256 RLVAKMK 262 (343)
Q Consensus 256 ~~~~~m~ 262 (343)
.+-.+..
T Consensus 484 ~LA~k~~ 490 (933)
T KOG2114|consen 484 LLATKFK 490 (933)
T ss_pred HHHHHhc
Confidence 6655543
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.19 E-value=1.1 Score=34.66 Aligned_cols=226 Identities=17% Similarity=0.098 Sum_probs=143.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc-CCCCChHhHHHHHHHHhcccCHHH
Q 044084 35 IGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK-GILEDPSVYASLICSFASIAEVKV 113 (343)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 113 (343)
.+....+...+.......... .....+......+...+.+..+...+...... ........+......+...++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 36 LGELAEALELLEEALELLPNS--DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc--cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHH
Confidence 456666666666665544331 01345666777777788888887777776642 223345556666667777777888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCcHhHHHHHHHHHHhcCC--CCchhhHHHHHHHHhcCCcHHHHHHHHHH
Q 044084 114 AEELFKEAEEKGMLRDLEVFLKLVL-MYIEEGMVEKTLEVVESMKNAEL--NISDCISCVIVNGFSKRRAYWAAVKVYEQ 190 (343)
Q Consensus 114 a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (343)
+...+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+..
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 114 ALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 888888777654433 222222333 67788888888888888755221 11223334444446677888888888888
Q ss_pred HHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 191 LISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 191 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
............+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+.+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 877631113566777777778888888888888887775411 2344444444455666788888888887765
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.09 E-value=0.72 Score=32.02 Aligned_cols=92 Identities=16% Similarity=0.093 Sum_probs=57.0
Q ss_pred HhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCc
Q 044084 69 SLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLE---VFLKLVLMYIEEGM 145 (343)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 145 (343)
+....|+.+.|++.|.+.+..- +-....||.-..++--.|+.++|+.-+++..+..-..+.. .|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566777777777777776652 2356667777777777777777777777666532222322 23333445666677
Q ss_pred HhHHHHHHHHHHhcCC
Q 044084 146 VEKTLEVVESMKNAEL 161 (343)
Q Consensus 146 ~~~a~~~~~~~~~~~~ 161 (343)
-+.|..=|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 7777777776665554
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=1.8 Score=35.47 Aligned_cols=152 Identities=8% Similarity=-0.072 Sum_probs=91.1
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCcHhH
Q 044084 72 KSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEK---GMLRDLEVFLKLVLMYIEEGMVEK 148 (343)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 148 (343)
-.|++.+|-..++++++. .+.|...+...=.+|.-.|+.+.-...++++... +++....+-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 356666666677777665 3446666666667777777777777777776643 222123333344455567788888
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHccCChhHHHHHHHH
Q 044084 149 TLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ---GCIPGQVTYASIINAYCRIGLYSKAEKVFIE 225 (343)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 225 (343)
|.+.-++..+.+. .|...-.+....+-..|++.++.++..+-... +-..-..-|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 8888877777665 45555666667777778888877776553321 1000111122222234455788888888875
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=94.74 E-value=2.5 Score=36.47 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHH
Q 044084 75 RAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVE 154 (343)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (343)
...+|.++-++..+.+. -|......+..+..-.++++.+...|++....++. ...+|........-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556666666666543 25666666666666667777788888777775532 45555555556666777888888777
Q ss_pred HHHhcCC-CCchhhHHHHHHHHhcCCcHHHHHHHHHH
Q 044084 155 SMKNAEL-NISDCISCVIVNGFSKRRAYWAAVKVYEQ 190 (343)
Q Consensus 155 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (343)
+..+..+ ..-.......++.|+.. ..+.+.++|-+
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 7554432 11122233334455543 45555555543
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.38 E-value=1.5 Score=32.29 Aligned_cols=134 Identities=12% Similarity=0.066 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 80 LKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
.+.++.+.+.+++|+...+..+++.+.+.|++... .++...++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34555555666777777777777777777765433 333344444444333333322221 222333333333221
Q ss_pred -CCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 160 -ELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 160 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
+. .+..+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 L~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGT-----AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 2445666666677777777666654222 111224455555555555554445444444
No 264
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=0.44 Score=38.44 Aligned_cols=107 Identities=11% Similarity=0.057 Sum_probs=62.8
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChH
Q 044084 17 GIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPS 96 (343)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (343)
|.+.+..+...++.......+++.+...+-++....-..-.+ ..+-...++.+. .-++++++.++..=.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~-~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLR-NWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhc-cccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444555566666666666667777777666654332110000 011122233332 234667777777767777778888
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcC
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKG 125 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (343)
+++.+|..+.+.+++..|.++...|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888777777766665543
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.35 E-value=0.13 Score=26.58 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHH
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESM 156 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~ 156 (343)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666666666666666666663
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.28 E-value=1.2 Score=31.01 Aligned_cols=138 Identities=12% Similarity=0.110 Sum_probs=59.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHH
Q 044084 34 KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKV 113 (343)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (343)
-.|..++..++..+...... ..-+|-+|.-....-+-+-..+.++..-+. .|.. ..|+...
T Consensus 14 ldG~V~qGveii~k~v~Ssn------i~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKr 74 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSSN------IKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKR 74 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-------HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THH
T ss_pred HhchHHHHHHHHHHHcCcCC------ccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHH
Confidence 34677777777776654321 334555555444444444444444443221 1111 1222222
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 114 AEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 114 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
....+..+ + .+.......+......|+-+.-.+++..+.+.+- +++...-.+..+|.+.|+..++.+++.+.-+
T Consensus 75 Vi~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~-~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 75 VIECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEE-INPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 22222211 1 1333444455555556665655555555543222 4444555555666666666666666666655
Q ss_pred cCC
Q 044084 194 QGC 196 (343)
Q Consensus 194 ~~~ 196 (343)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 553
No 267
>PRK11906 transcriptional regulator; Provisional
Probab=94.23 E-value=3.3 Score=35.76 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=81.8
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHH
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (343)
.+..+|.++-++..+.+.. |+.....+..+..-.++++.|..+|++....++ ....+|......+...|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456777777888887754 888888888888888999999999999987764 34445555556666789999999999
Q ss_pred HHHHHcCCCCCH---hhHHHHHHHHHccCChhHHHHHHHHHH
Q 044084 189 EQLISQGCIPGQ---VTYASIINAYCRIGLYSKAEKVFIEMQ 227 (343)
Q Consensus 189 ~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~ 227 (343)
++..+. .|.. ......+..|+. ...+.+..++-+-.
T Consensus 396 ~~alrL--sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 434 (458)
T PRK11906 396 DKSLQL--EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKET 434 (458)
T ss_pred HHHhcc--CchhhHHHHHHHHHHHHcC-CchhhhHHHHhhcc
Confidence 997765 3433 233344556665 45677777665433
No 268
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.23 E-value=0.0016 Score=46.86 Aligned_cols=122 Identities=7% Similarity=0.079 Sum_probs=67.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccC
Q 044084 206 IINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN 285 (343)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 285 (343)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.... .-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 4555566666777777777776655445566677777777777666666666552111 222334455555554
Q ss_pred hhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCccHHHHHHHHHHHhccccc
Q 044084 286 LRQLEKYTTVISAYNMAREFDMCVKFYNEFRMN-------GGVIDRAMAGIMVGVFSKLSQI 340 (343)
Q Consensus 286 ~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~g~~ 340 (343)
++++ +..|.+.|++++|++++..+..- .-.+++..|..+++.+...++.
T Consensus 86 ~~~a------~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEA------VYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHH------HHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred HHHH------HHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 4433 33556666666666543222111 1134677788888877766653
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.21 E-value=0.083 Score=27.00 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=18.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHH
Q 044084 119 KEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTL 150 (343)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (343)
++.++..+. +...|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 344444432 5666777777777777766664
No 270
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.19 E-value=0.0011 Score=47.79 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=22.0
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHH
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVE 154 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (343)
+..+.+.+.++.....++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444444444443333334444444444444444444444433
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.18 E-value=2.7 Score=34.50 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCCCCChHhHH
Q 044084 78 EILKFFRDMKEKGILEDPSVYA 99 (343)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~ 99 (343)
+.+.+++.|.+.|.+-+..+|-
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~l 101 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYL 101 (297)
T ss_pred HHHHHHHHHHHhccCccChHHH
Confidence 3444555555555554444433
No 272
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.05 E-value=0.7 Score=34.87 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=59.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc---CCCCChHhHHHHHHHHhc
Q 044084 31 AFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK---GILEDPSVYASLICSFAS 107 (343)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 107 (343)
...+.|+ +.|.+.|-.+...+...+ ......|...|. ..+.++++.++.+..+. +-.+|+..+..|.+.+.+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t---~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELET---AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCC---HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4566666 678888888877766544 455555555555 67799999999888764 336788999999999999
Q ss_pred ccCHHHHH
Q 044084 108 IAEVKVAE 115 (343)
Q Consensus 108 ~~~~~~a~ 115 (343)
.|+.+.|-
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99988774
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.01 E-value=0.13 Score=26.59 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=12.4
Q ss_pred HHHHHHHhhccCcHHHHHHHHHH
Q 044084 63 YKILCDSLGKSGRAFEILKFFRD 85 (343)
Q Consensus 63 ~~~li~~~~~~~~~~~a~~~~~~ 85 (343)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 274
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.90 E-value=4.3 Score=35.89 Aligned_cols=231 Identities=12% Similarity=0.059 Sum_probs=130.3
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCcHhHHHHHHHHHHhcCCCCchhhHHH
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDL------EVFLKLVLMYIE----EGMVEKTLEVVESMKNAELNISDCISCV 170 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (343)
++....-.||-+.+++.+.+..+.+--..+ -.|+..+..++. ....+.|.++++.+.+.- |+...|..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 444555668888888888877664322122 223444443333 346788999999988764 55545543
Q ss_pred H-HHHHhcCCcHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHH-HHHH
Q 044084 171 I-VNGFSKRRAYWAAVKVYEQLISQG---CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM-VAMY 245 (343)
Q Consensus 171 l-~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~ 245 (343)
. .+.+...|++++|.+.|++..... .+.....+--+.-.+.-..++++|...|..+.+.. .-...+|.-+ ..++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 3 355667899999999999765421 11222334445556777899999999999998864 2233333333 2344
Q ss_pred HccCCh-------HHHHHHHHHHhhC------CCCchHHHHHHHHHHHhcccC--hhH------HHhHHHHHHHHHhcCC
Q 044084 246 GKTGRI-------RDAMRLVAKMKPK------GCEPNVWIYNSLMDMHGRAKN--LRQ------LEKYTTVISAYNMARE 304 (343)
Q Consensus 246 ~~~~~~-------~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~~~--~~~------a~~~~~l~~~~~~~g~ 304 (343)
...|+. ++|.++|.+.... .-.|-......-++-|...+. +-+ +.+...+-+++.+.++
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~~~~~~~d~~~~~p~~El~y~WNg~~~~~~ 430 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQAKVDLVDAILVLPALELMYFWNGFPRMPK 430 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhcCCCcchhhhhcCHHHHHHHHHhccccCCh
Confidence 556777 8888888776532 122322323333344444322 111 1123444455555555
Q ss_pred HHHHHHHHHHHHhC---CCCccHHHHHHHHHHH
Q 044084 305 FDMCVKFYNEFRMN---GGVIDRAMAGIMVGVF 334 (343)
Q Consensus 305 ~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~ 334 (343)
-..-...+...... ...+|......++.+.
T Consensus 431 ~~l~~~~~~~l~~~~~~~~~~De~~l~~lL~g~ 463 (468)
T PF10300_consen 431 EELEIKSLLELEESKNSEEDPDERALRHLLKGA 463 (468)
T ss_pred HHHHHHHHHHHHhcccccCCccHHHHHHHHHHH
Confidence 44433444444332 2456777665566543
No 275
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.84 E-value=2.6 Score=33.19 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=28.9
Q ss_pred cccCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 107 SIAEVKVAEELFKEAEEKGML--RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
+.|++++|.+.|+.+....+- -...+.-.++-++.+.+++++|+..+++.....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 456666666666666543221 123444445555566666666666666655443
No 276
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.77 E-value=1.2 Score=35.99 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 146 VEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
+++++.++..=.+.|+-||..+++.+|+.+.+.+++.+|..+...|..
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555554444443
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.66 E-value=2 Score=31.23 Aligned_cols=51 Identities=16% Similarity=0.076 Sum_probs=21.7
Q ss_pred cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 044084 107 SIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKN 158 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (343)
+.++.+.+..++..+.-..+. ....-..-...+...|+|.+|+.+|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555544443221 111112222334455555555555555443
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.64 E-value=4.5 Score=35.25 Aligned_cols=64 Identities=9% Similarity=0.085 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC-chhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNI-SDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
.+-..+..+.-+.|+.++|++.++++.+..... .......|+.++...+.+.++..++.+-.+.
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 333455666667788888888888776544322 2335566777888888888888887776543
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.63 E-value=3.7 Score=34.19 Aligned_cols=230 Identities=16% Similarity=0.135 Sum_probs=113.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc--CCCC---ChHhHHHHHHHHh
Q 044084 32 FYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK--GILE---DPSVYASLICSFA 106 (343)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~ 106 (343)
+....+.++|+..|.+...+-...- .-..++..+..+.++.|.+++++..--..... ...- --..|..+.+++-
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~-~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLM-GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHH-HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777766554421111 11345556666777777777665432111110 0000 1122333334444
Q ss_pred cccCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC-----CCCchhhHHHHHHHHhc
Q 044084 107 SIAEVKVAEELFKEAEEK-GMLR---DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE-----LNISDCISCVIVNGFSK 177 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 177 (343)
+.-++.+++.+-..-... |..| -.....++..++...+.++++++.|+...+.- ......++..+-+.|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 444444444443332221 1111 12333445566666677777777777654321 11223356667777777
Q ss_pred CCcHHHHHHHHHHHHHc--CCC-CCH-hhHHH-----HHHHHHccCChhHHHHHHHHHHHc----CCCc-ChhhHHHHHH
Q 044084 178 RRAYWAAVKVYEQLISQ--GCI-PGQ-VTYAS-----IINAYCRIGLYSKAEKVFIEMQQK----GFDK-CVVAYSSMVA 243 (343)
Q Consensus 178 ~~~~~~a~~~~~~~~~~--~~~-p~~-~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 243 (343)
..++++|.-+..+..+. .+. -|. ..|.. |.-++-..|+...|.+.-++..+. |-.+ .....-.+.+
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 77777777666655432 111 111 11222 223345566666666666654432 3111 1233445666
Q ss_pred HHHccCChHHHHHHHHHHh
Q 044084 244 MYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 244 ~~~~~~~~~~a~~~~~~m~ 262 (343)
.|...|+.+.|+.-|+...
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 7777777777776665543
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.43 E-value=8 Score=37.52 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=8.8
Q ss_pred HHHHHccCChHHHHHHHHHH
Q 044084 242 VAMYGKTGRIRDAMRLVAKM 261 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~m 261 (343)
+.+|..+|+|.+|+.+..++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhh
Confidence 33444444444444444443
No 281
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=3 Score=32.61 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECE 49 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 49 (343)
.|..-..+|....++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444555666666666666555543
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.23 E-value=2.4 Score=30.84 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=8.6
Q ss_pred hcCCcHHHHHHHHHHHHH
Q 044084 176 SKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~ 193 (343)
...|++.+|..+|+++..
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344455555555555443
No 283
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.23 E-value=3 Score=32.08 Aligned_cols=214 Identities=16% Similarity=0.145 Sum_probs=105.0
Q ss_pred CcHHHHHHHHHHHHhcCCC-CChHhHHHHHHHHhcccCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCcHhHHHH
Q 044084 74 GRAFEILKFFRDMKEKGIL-EDPSVYASLICSFASIAEVKVAEELFKEAEEK-GMLRDLEVFLKLVLMYIEEGMVEKTLE 151 (343)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (343)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444554444443221 12344555555556666666666665555442 122344555555556666666666666
Q ss_pred HHHHHHhcCCCCchhhHHHHHH-HHhcCCcHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 152 VVESMKNAELNISDCISCVIVN-GFSKRRAYWAAVKVYEQLISQGC--IPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665543322 111222222 45566666666666666644210 01222233333334555666666666666665
Q ss_pred cCCCc-ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCch-HHHHHHHHHHHhcccChhHHHh
Q 044084 229 KGFDK-CVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPN-VWIYNSLMDMHGRAKNLRQLEK 291 (343)
Q Consensus 229 ~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 291 (343)
.. +. ....+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+..
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHH
Confidence 43 22 2455555666666666666666666666554 222 2333333333334444444443
No 284
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.18 E-value=4.6 Score=34.01 Aligned_cols=280 Identities=13% Similarity=0.050 Sum_probs=171.6
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHH--HhhccCcHHHHHHHHHHHHhcCCCCChHhHH-
Q 044084 25 YCQIMEAF--YKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCD--SLGKSGRAFEILKFFRDMKEKGILEDPSVYA- 99 (343)
Q Consensus 25 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 99 (343)
|..|-..+ .-.|+-..|.++-.+..+. +..+ ......|+. +-.-.|+++.|.+-|+.|.. |+.|-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssD---qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRll 155 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSD---QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLL 155 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhcc---chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHH
Confidence 44444444 3457777887776665422 2222 233444443 44567999999999999986 333332
Q ss_pred ---HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC-CCchh--hHHHHHH
Q 044084 100 ---SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL-NISDC--ISCVIVN 173 (343)
Q Consensus 100 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~l~~ 173 (343)
-|.-..-+.|+.+.|.+.-+..-..... =...+...+...+..|+|+.|+++++.-....+ .++.. .-..|+.
T Consensus 156 GLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 156 GLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 2333345778888888888877765433 467889999999999999999999988665432 22221 1222332
Q ss_pred HHh---cCCcHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccC
Q 044084 174 GFS---KRRAYWAAVKVYEQLISQGCIPGQVT-YASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249 (343)
Q Consensus 174 ~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (343)
+-. -.-++..|.+.-.+..+. .||..- -..-.+++.+.|+..++-.+++.+-+.. |.+..+...+ +.+.|
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~g 308 (531)
T COG3898 235 AKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSG 308 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCC
Confidence 221 134566666665555443 565432 2334578899999999999999999875 4444443333 34555
Q ss_pred ChHHHHHHHHHHhhC-CCCc-hHHHHHHHHHHHhcccChhHHHh--------------HHHHHHHHH-hcCCHHHHHHHH
Q 044084 250 RIRDAMRLVAKMKPK-GCEP-NVWIYNSLMDMHGRAKNLRQLEK--------------YTTVISAYN-MAREFDMCVKFY 312 (343)
Q Consensus 250 ~~~~a~~~~~~m~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~--------------~~~l~~~~~-~~g~~~~a~~~~ 312 (343)
+ .+..-+++.... .++| +......+.++-...|++..|.. |..|.+.-. ..|+-.++..++
T Consensus 309 d--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 309 D--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred C--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 4 333333333321 2344 44566667777777888776655 554544433 448888888888
Q ss_pred HHHHhCCCCc
Q 044084 313 NEFRMNGGVI 322 (343)
Q Consensus 313 ~~m~~~~~~p 322 (343)
-+.+..--.|
T Consensus 387 Aqav~APrdP 396 (531)
T COG3898 387 AQAVKAPRDP 396 (531)
T ss_pred HHHhcCCCCC
Confidence 8877654334
No 285
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.77 E-value=1.3 Score=28.85 Aligned_cols=49 Identities=12% Similarity=0.268 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++|+.++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445666666666666677777777777777777777777777776663
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.38 E-value=7.1 Score=34.12 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=57.5
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc-ChhhHHHHHH
Q 044084 166 CISCVIVNGFSKRRAYWAAVKVYEQLISQGCI-PGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK-CVVAYSSMVA 243 (343)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 243 (343)
.+-..+..++.+.|+.++|.+++++|.+.... -.......|+.++...+.+.++..++.+..+...+. -...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 33445777788899999999999999876321 233466789999999999999999999986544332 2445666553
Q ss_pred H
Q 044084 244 M 244 (343)
Q Consensus 244 ~ 244 (343)
-
T Consensus 340 k 340 (539)
T PF04184_consen 340 K 340 (539)
T ss_pred H
Confidence 3
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.36 E-value=1.3 Score=29.18 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 183 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
+..+-++.+....+.|++....+.+++|-+.+++..|.++|+.++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555555556666666666666666666666666666666544
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.28 E-value=8.6 Score=34.91 Aligned_cols=182 Identities=15% Similarity=0.086 Sum_probs=99.7
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHH--HHH-HHhcCCHHHHHHHHHHHHh-------CCCCCCCchHHHHHHHHHHhhc
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQI--MEA-FYKIGDSEKVAALFLECES-------RKLDLTPSSTHMYKILCDSLGK 72 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~li~~~~~ 72 (343)
...|.+.++...+.|.. .......+ ... +...++.+.|...|..+.+ ++..+ ....+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~------a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP------AQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc------cccHHHHHHhc
Confidence 35677777777776631 22222222 222 4466788888888887766 44222 34556666655
Q ss_pred cC-----cHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhc-ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcC
Q 044084 73 SG-----RAFEILKFFRDMKEKGILEDPSVYASLICSFAS-IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYI--EEG 144 (343)
Q Consensus 73 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~ 144 (343)
.. +.+.|..++...-+.|. |+...+-..+..... ..+...|.++|....+.|.. ....+..++-... ...
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCC
Confidence 32 56678888887777653 344333222222222 24567888888888887743 2222222221111 234
Q ss_pred cHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC
Q 044084 145 MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG 195 (343)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (343)
+...|..++.+..+.+. |...--...+..+.. +.++.+.-.+..+...|
T Consensus 379 ~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 67788888888877774 332222222333333 66666666666666555
No 289
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=4.6 Score=31.42 Aligned_cols=25 Identities=4% Similarity=0.113 Sum_probs=17.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcc
Q 044084 299 YNMAREFDMCVKFYNEFRMNGGVID 323 (343)
Q Consensus 299 ~~~~g~~~~a~~~~~~m~~~~~~p~ 323 (343)
-...+++.+|+++|++.-...+..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch
Confidence 3456788889999888766544433
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.93 E-value=0.74 Score=23.15 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
+|..+...|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4445555555555555555555555443
No 291
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.67 E-value=2.6 Score=27.56 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 044084 215 LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278 (343)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 278 (343)
+.-++.+-++.+...++.|++....+.+++|.+.+++..|.++|+-.+.+ +..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 45566777777777888899999999999999999999999999887754 2223445555543
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.46 E-value=5.3 Score=30.75 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 236 VAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
.||--+...+...|+.++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34555555555555555555555555443
No 293
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.45 E-value=8.6 Score=33.18 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHcCCCc----ChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 215 LYSKAEKVFIEMQQKGFDK----CVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
+.+++..+-+.+....+.+ =..++..++....+.++...|.+.+.-+.-
T Consensus 274 ~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 274 DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 5556665555554432211 145677788888888888888887766654
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.39 E-value=0.35 Score=24.62 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=10.7
Q ss_pred ChhhHHHHHHHHHccCChHHH
Q 044084 234 CVVAYSSMVAMYGKTGRIRDA 254 (343)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a 254 (343)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555544
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.10 E-value=4.8 Score=29.65 Aligned_cols=132 Identities=11% Similarity=0.112 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC--cHHHHHHHHHHHHH
Q 044084 116 ELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR--AYWAAVKVYEQLIS 193 (343)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 193 (343)
+.++.+.+.++.|+...+..+++.+.+.|++.... .+.+.++-+|.......+-.+.... -..-+.+++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 44555667788888888888888888888765544 3444444455444333332222211 13344555555442
Q ss_pred cCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 194 QGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 194 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
.+..++..+...|++-+|.++.+...... ......++.+-.+.++...-..+++-..+
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556677788888888888776653321 22234566666666666555555555444
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.07 E-value=0.93 Score=22.63 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
.+..+...+...|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455555666666666666666665543
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.00 E-value=1.1 Score=29.48 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 044084 217 SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278 (343)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 278 (343)
-+..+-++.+...++.|++....+.+++|.+.+++..|.++|+-++.+ +.+....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 356666677777788899999999999999999999999999888765 2222225555544
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.84 E-value=0.84 Score=24.14 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666665543
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.55 E-value=4.7 Score=30.59 Aligned_cols=78 Identities=19% Similarity=0.182 Sum_probs=58.5
Q ss_pred hcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh---cCCCCchhhHHHHHHHHhcCCcHH
Q 044084 106 ASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKN---AELNISDCISCVIVNGFSKRRAYW 182 (343)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~ 182 (343)
.+.|+ +.|...|-.+...+.--++.....|...|. ..+.++++.++....+ .+-.+|+..+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 677888888877766556776666666665 6778999999888764 233577888999999999999998
Q ss_pred HHH
Q 044084 183 AAV 185 (343)
Q Consensus 183 ~a~ 185 (343)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 885
No 300
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.39 E-value=6.4 Score=29.88 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=39.0
Q ss_pred hcccCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcH
Q 044084 106 ASIAEVKVAEELFKEAEEKGMLRD----LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181 (343)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (343)
.+.|++++|..-|...+...+... ...|..-..++.+.+.++.|++--.+..+.++ ........-..+|.+..++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhhhH
Confidence 345555555555555554432211 12233333444555555555554444444433 1111111223345555555
Q ss_pred HHHHHHHHHHHHc
Q 044084 182 WAAVKVYEQLISQ 194 (343)
Q Consensus 182 ~~a~~~~~~~~~~ 194 (343)
+.|+.=|..+...
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555544
No 301
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=8.6 Score=30.25 Aligned_cols=203 Identities=11% Similarity=0.130 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
...|..-..+|...+++++|-..+.+..+. ..-+...|. ..+.++.|.-+.+++.+.. --+..|+.-...
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHH
Confidence 455666667777778888877766665431 121222222 1233455555555554421 124455666667
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc---C--CCCCHhhHHHHHHHHHccC
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ---G--CIPGQVTYASIINAYCRIG 214 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~p~~~~~~~ll~~~~~~~ 214 (343)
|..+|.++.|-..+++.-+. ..+.+++.|+++|++...- + ..--...+...-+.+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 77777777666666654321 2234455555555554321 0 0001122333445556666
Q ss_pred ChhHHHHHHHHHHHc----CCCcCh-hhHHHHHHHHHccCChHHHHHHHHHHhhCC---CCchHHHHHHHHHHHhcccCh
Q 044084 215 LYSKAEKVFIEMQQK----GFDKCV-VAYSSMVAMYGKTGRIRDAMRLVAKMKPKG---CEPNVWIYNSLMDMHGRAKNL 286 (343)
Q Consensus 215 ~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~ 286 (343)
++++|-..|.+-... .--++. ..|-..|-.|.-..++..|...++.--+.+ -.-+..+...|+.+|- .|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCH
Confidence 666665544432211 101111 235555666667778888888887744331 1235566777777665 3444
Q ss_pred hHH
Q 044084 287 RQL 289 (343)
Q Consensus 287 ~~a 289 (343)
+++
T Consensus 244 E~~ 246 (308)
T KOG1585|consen 244 EEI 246 (308)
T ss_pred HHH
Confidence 443
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.65 E-value=0.93 Score=23.96 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKE 88 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 88 (343)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4556666666666666666666666543
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.62 E-value=0.99 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=13.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHh
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKE 88 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 88 (343)
+|..+...+...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555544
No 304
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.60 E-value=16 Score=33.25 Aligned_cols=182 Identities=15% Similarity=0.164 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHH--HH-hhccCcHHHHHHHHHHHHh-------cCCCCChHhHHHHHHHHhc
Q 044084 38 SEKVAALFLECESRKLDLTPSSTHMYKILC--DS-LGKSGRAFEILKFFRDMKE-------KGILEDPSVYASLICSFAS 107 (343)
Q Consensus 38 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 107 (343)
...|.+.++...+.+.... .....++ .+ +....+++.|+.+|+...+ .| ......-+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g~~~a----~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEA----QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhcchHH----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4678888888877775322 1122222 22 4566789999999999877 44 33345556666665
Q ss_pred cc-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHh--cCC
Q 044084 108 IA-----EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE-EGMVEKTLEVVESMKNAELNISDCISCVIVNGFS--KRR 179 (343)
Q Consensus 108 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~ 179 (343)
.. +.+.|..++.+..+.|. |+....-..+..... ..+...|.++|....+.|.. ....+.+++.... ...
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCC
Confidence 42 67889999999999885 465554444433333 34678999999999998873 3332322222222 345
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 044084 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (343)
+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 7899999999999988 4443333334444555 77777777777776665
No 305
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.37 E-value=8.4 Score=29.72 Aligned_cols=189 Identities=13% Similarity=0.072 Sum_probs=100.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHH
Q 044084 108 IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKV 187 (343)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (343)
.|-+..|.--|.+.....+. -+.+||.|.--+...|+++.|.+.|+...+.++.-+-...|.=| ++.-.|++.-|.+=
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 34444454455555543322 47889999999999999999999999998877533222222212 23346888888877
Q ss_pred HHHHHHcCCCCCHhhHHHH-HHHHHccCChhHHHHHHHH-HHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 044084 188 YEQLISQGCIPGQVTYASI-INAYCRIGLYSKAEKVFIE-MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 188 ~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 265 (343)
+-..-+.. +.|+ |.++ +-.--+.-++.+|..-+.+ ..+ .|..-|...|-.|. .|++. ...+++++...
T Consensus 156 ~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~- 225 (297)
T COG4785 156 LLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS-EETLMERLKAD- 225 (297)
T ss_pred HHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhh-
Confidence 77666553 1122 2211 1111233456666543332 222 23334433333222 12221 12333444332
Q ss_pred CCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044084 266 CEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGG 320 (343)
Q Consensus 266 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 320 (343)
-..+...-..|-.. |--+..-+...|+.++|..+|+-....++
T Consensus 226 a~~n~~~Ae~LTEt------------yFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTET------------YFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHH------------HHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 12122222223233 44456667788899999999988776544
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.30 E-value=0.82 Score=22.86 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=14.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 237 AYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
.|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555566666666666655554
No 307
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.80 E-value=21 Score=33.68 Aligned_cols=181 Identities=10% Similarity=0.015 Sum_probs=104.2
Q ss_pred HHHhcCcHhHHHHHHHHHHhcCCCCchh-------hHHHHHH-HHhcCCcHHHHHHHHHHHHHc----CCCCCHhhHHHH
Q 044084 139 MYIEEGMVEKTLEVVESMKNAELNISDC-------ISCVIVN-GFSKRRAYWAAVKVYEQLISQ----GCIPGQVTYASI 206 (343)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l 206 (343)
......++++|..+..+....-..|+.. .++.+-. .....|+++.+.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445678999999988876543322221 2333322 234478899999888877654 223445556667
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCcChhh---HHHHH--HHHHccCChH--HHHHHHHHHhhC-----C-CCchHHHH
Q 044084 207 INAYCRIGLYSKAEKVFIEMQQKGFDKCVVA---YSSMV--AMYGKTGRIR--DAMRLVAKMKPK-----G-CEPNVWIY 273 (343)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~~~~~--~a~~~~~~m~~~-----~-~~p~~~~~ 273 (343)
..+..-.|++++|..+.....+..-..++.. |..+. ..+...|+.. +....|...... . ..+-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7777888999999988887665422233333 33332 2345566332 223333333221 1 01233445
Q ss_pred HHHHHHHhcc-cChhHHHh------------------HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044084 274 NSLMDMHGRA-KNLRQLEK------------------YTTVISAYNMAREFDMCVKFYNEFRMNG 319 (343)
Q Consensus 274 ~~l~~~~~~~-~~~~~a~~------------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 319 (343)
..+..++.+. +...++.. +..|+......|++++|...++++....
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 5566666551 11111111 3467788889999999999999886543
No 308
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=88.52 E-value=3.6 Score=26.34 Aligned_cols=64 Identities=8% Similarity=0.122 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHH
Q 044084 42 AALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVA 114 (343)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 114 (343)
.++++.+.++++-.. .....+-.+-...|+.+.|.+++..+. .| |+ .|...+.++-..|.-+-|
T Consensus 22 ~~v~d~ll~~~ilT~----~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLLTE----EDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCCCH----HHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 345555555553322 222322222234455555566655555 43 22 244455555555444333
No 309
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.16 E-value=12 Score=30.20 Aligned_cols=61 Identities=8% Similarity=-0.057 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc-CCCCchhhHHHHHHHHhcCCcHHHHHHHH
Q 044084 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNA-ELNISDCISCVIVNGFSKRRAYWAAVKVY 188 (343)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (343)
++..+...++..+++.+++.+-.++++..... ++..|...|..+|......|+..-..++.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444445555555555555555555444332 33334444555555555555544444433
No 310
>PRK09687 putative lyase; Provisional
Probab=87.89 E-value=13 Score=30.24 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=121.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcH----HHHHHHHHHHHhcCCCCCh
Q 044084 20 LDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRA----FEILKFFRDMKEKGILEDP 95 (343)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~ 95 (343)
+|.......+..+...|..+ +...+..+.... + ...-...+.++++.|+. .++...+..+... .|+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~~---d---~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSSK---N---PIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhCC---C---HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 44555555566666666533 333333332211 1 23444556666666653 4566666666433 3455
Q ss_pred HhHHHHHHHHhcccCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHH
Q 044084 96 SVYASLICSFASIAEV-----KVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCV 170 (343)
Q Consensus 96 ~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (343)
..-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ++++..+-.+.+. ++...-..
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~ 178 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNW 178 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHH
Confidence 5454555555544321 122233322222 2466666677777777776 4566666665543 23233334
Q ss_pred HHHHHhcCC-cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccC
Q 044084 171 IVNGFSKRR-AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249 (343)
Q Consensus 171 l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (343)
-+.++...+ +...+...+..+.. .++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence 444444432 23355555555553 35666666777777777774 4444444444433 2 2345667777777
Q ss_pred ChHHHHHHHHHHhhCCCCchHHHHHHHHHHHh
Q 044084 250 RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHG 281 (343)
Q Consensus 250 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 281 (343)
.. +|...+..+.+. .||..+-...+.+|.
T Consensus 250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 250 DK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 74 577777777754 446666555555543
No 311
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.89 E-value=2.1 Score=21.35 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKN 158 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (343)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666667777777776666554
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.68 E-value=7 Score=30.15 Aligned_cols=77 Identities=8% Similarity=0.009 Sum_probs=52.3
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcC--CCcChhhHHHHHHH
Q 044084 167 ISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG--FDKCVVAYSSMVAM 244 (343)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 244 (343)
|.+..++.+.+.+...+++.+.++-.+.+ +.|..+-..+++.+|-.|++++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677778888888888887776663 3455556677888888888888887776665542 22335566666654
No 313
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.62 E-value=1.9 Score=23.54 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=11.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhh
Q 044084 241 MVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.59 E-value=8.5 Score=27.64 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=9.2
Q ss_pred HHhcCcHhHHHHHHHHHHhc
Q 044084 140 YIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~ 159 (343)
+...|+|++|.++|+.+.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 34444444444444444433
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.55 E-value=1.8 Score=35.55 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=30.4
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHH
Q 044084 208 NAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAK 260 (343)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (343)
+-|.++|.+++|+..+..-.... +.|.+++..-..+|.+..++..|..--..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 34666667777766666655542 22666666666666666666655543333
No 316
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.43 E-value=12 Score=33.64 Aligned_cols=133 Identities=16% Similarity=0.112 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHH
Q 044084 23 GCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLI 102 (343)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (343)
..-+.+.+.+.+.|-.++|+++- .+|+ .-|. ...+.|+++.|.++..+.. +..-|..|.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s-------~D~d----~rFe----lal~lgrl~iA~~la~e~~------s~~Kw~~Lg 673 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS-------TDPD----QRFE----LALKLGRLDIAFDLAVEAN------SEVKWRQLG 673 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC-------CChh----hhhh----hhhhcCcHHHHHHHHHhhc------chHHHHHHH
Confidence 35667778888888888877642 2222 2232 3346788888887766542 455688888
Q ss_pred HHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHH
Q 044084 103 CSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182 (343)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (343)
.+....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|. .|. . .-+|...|+++
T Consensus 674 ~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~-A----F~~~~l~g~~~ 738 (794)
T KOG0276|consen 674 DAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL-A----FLAYFLSGDYE 738 (794)
T ss_pred HHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cch-H----HHHHHHcCCHH
Confidence 888899999988888876553 34566677777776666666666666654 332 2 23455678888
Q ss_pred HHHHHHHHH
Q 044084 183 AAVKVYEQL 191 (343)
Q Consensus 183 ~a~~~~~~~ 191 (343)
++.+++..-
T Consensus 739 ~C~~lLi~t 747 (794)
T KOG0276|consen 739 ECLELLIST 747 (794)
T ss_pred HHHHHHHhc
Confidence 888777653
No 317
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.39 E-value=14 Score=29.94 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=48.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh-----CCCCchHHH
Q 044084 202 TYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP-----KGCEPNVWI 272 (343)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 272 (343)
+++...+.|..+|.+.+|.++.+.....+ +.+...+-.++..+...|+--.+..-++++.+ .|+..|...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 34555677888888888888888877765 56677777888888888887677666666542 355555443
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.33 E-value=6.4 Score=30.34 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=43.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 044084 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGML--RDLEVFLKLVL 138 (343)
Q Consensus 63 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 138 (343)
.+..++.+.+.+...+++...++-.+.. +.|..+-..++..++-.|++++|..-++........ +-..+|..+++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445566666777777777766655542 224555666777777777777777666655543221 22444555554
No 319
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.24 E-value=13 Score=29.95 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=22.3
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
|.+++..++|.++....-+.-+.--+.-+.+...-|-.|.+.+.+..+.++-....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444444444444433332221111123333333444445555444444444433
No 320
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.22 E-value=11 Score=30.35 Aligned_cols=123 Identities=13% Similarity=0.073 Sum_probs=77.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC-----C-CCCCch----HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 31 AFYKIGDSEKVAALFLECESRK-----L-DLTPSS----THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
.+.-..||..|++.-++-.+.- . .+.... ......=|.+++..+++.+++.+.-+--+.--+..+.....
T Consensus 44 ~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL 123 (309)
T PF07163_consen 44 LLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 3444567777776665543321 0 011000 12233347899999999999887766655422333445666
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcCcHhHHHHHH
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYI-----EEGMVEKTLEVV 153 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 153 (343)
.|-.|.+.+.+..+.++-..-.+..-.-+..-|..+...|. -.|.+++|+++.
T Consensus 124 CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 67788999999999888877766432234445777766665 469999999887
No 321
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=86.90 E-value=6.2 Score=25.29 Aligned_cols=65 Identities=17% Similarity=0.084 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHH
Q 044084 184 AVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDA 254 (343)
Q Consensus 184 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (343)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .| +..|..++.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3445555555553 222222322222234456666666666666 44 34555666666655554433
No 322
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.88 E-value=20 Score=31.13 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=48.7
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CCCCCC---------chHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCC----CCChH
Q 044084 32 FYKIGDSEKVAALFLECESR--KLDLTP---------SSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGI----LEDPS 96 (343)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~--~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ 96 (343)
+.+.+.+.+|.+.+..-..+ +..+.- ++...=+..+.++...|++.++..+++++...=. .-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 45778888998888776554 222110 0111223456677889999999999888876532 25777
Q ss_pred hHHHHHHHHhcc
Q 044084 97 VYASLICSFASI 108 (343)
Q Consensus 97 ~~~~l~~~~~~~ 108 (343)
+|+.++-.++++
T Consensus 169 ~yd~~vlmlsrS 180 (549)
T PF07079_consen 169 MYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHhHH
Confidence 888765555443
No 323
>PHA02875 ankyrin repeat protein; Provisional
Probab=86.73 E-value=20 Score=31.09 Aligned_cols=203 Identities=10% Similarity=0.059 Sum_probs=98.1
Q ss_pred HHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHH
Q 044084 7 LHYYEKMKSAGIVLDSGC--YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFR 84 (343)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 84 (343)
.++++.+.+.|..|+... ..+.+...++.|+.+-+.-+ .+.|..++.......+ .+...+..|+.+.+..+++
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~L----l~~ga~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLL----MKHGAIPDVKYPDIES-ELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCccccCCCccc-HHHHHHHCCCHHHHHHHHH
Confidence 356677778887766543 34456666778887654443 3445444321111222 3444456777766555543
Q ss_pred HHHhcCCCCChH---hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 85 DMKEKGILEDPS---VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV--FLKLVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 85 ~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
.|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..+++ .
T Consensus 90 ----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~ 157 (413)
T PHA02875 90 ----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID----H 157 (413)
T ss_pred ----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----c
Confidence 33211110 0112333445566654 4455556666554221 1234455566777665544443 3
Q ss_pred CCCC---chhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhh---HHHHHHHHHccCChhHHHHHHHHHHHcCCCc
Q 044084 160 ELNI---SDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVT---YASIINAYCRIGLYSKAEKVFIEMQQKGFDK 233 (343)
Q Consensus 160 ~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (343)
|..+ +..-.+.+..+ +..|+.+ +.+.+.+.|..|+... ....+...+..|+.+ +.+.+.+.|..+
T Consensus 158 g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~ 228 (413)
T PHA02875 158 KACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADC 228 (413)
T ss_pred CCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCc
Confidence 3322 22223333333 3455554 4455566665555432 123444345556654 444455566555
Q ss_pred Ch
Q 044084 234 CV 235 (343)
Q Consensus 234 ~~ 235 (343)
+.
T Consensus 229 n~ 230 (413)
T PHA02875 229 NI 230 (413)
T ss_pred ch
Confidence 53
No 324
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.30 E-value=1.4 Score=20.64 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=10.2
Q ss_pred HHHHHHHccCChHHHHHHHH
Q 044084 240 SMVAMYGKTGRIRDAMRLVA 259 (343)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~ 259 (343)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.22 E-value=2.2 Score=20.92 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=12.8
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhc
Q 044084 136 LVLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
+..++.+.|++++|.+.|+++...
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444455555555555555555443
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.98 E-value=2.9 Score=22.84 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044084 294 TVISAYNMAREFDMCVKFYNEFRMNGG 320 (343)
Q Consensus 294 ~l~~~~~~~g~~~~a~~~~~~m~~~~~ 320 (343)
.+..+|...|+.+.|.+++++....|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 367889999999999999999987654
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.94 E-value=29 Score=32.11 Aligned_cols=42 Identities=10% Similarity=0.151 Sum_probs=22.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhcc
Q 044084 28 IMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKS 73 (343)
Q Consensus 28 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 73 (343)
+|-.|.|+|++++|.++.......--.. ...+...+..+...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~----~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKI----ERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TT----TTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcch----hHHHHHHHHHHHhC
Confidence 4556667777777777764443322111 13455566666554
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.60 E-value=39 Score=33.28 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=17.1
Q ss_pred CCChHhHHHHHHHHhccc--CHHHHHHHHHHHHH
Q 044084 92 LEDPSVYASLICSFASIA--EVKVAEELFKEAEE 123 (343)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 123 (343)
.|+ .....+|.++.+.+ .++.++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 33445666777665 55556555555553
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.58 E-value=2.7 Score=20.93 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECES 50 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 50 (343)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555566666666666555443
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.44 E-value=21 Score=30.04 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc---ChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 201 VTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK---CVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 201 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
.++..+.+.+.+.|.++.|...+..+...+... ++...-.-+..+-..|+..+|...++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555566666666666666666655532111 223333344455555666666665555554
No 331
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=85.38 E-value=5.1 Score=27.08 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 292 YTTVISAYNMAREFDMCVKFYNEFRM 317 (343)
Q Consensus 292 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 317 (343)
|..++..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 78899999999999999999999877
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.80 E-value=19 Score=32.42 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=62.2
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (343)
..+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+..
T Consensus 647 al~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 34566666666654432 2566677777877788888887777776643 44455556666666665
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHH
Q 044084 185 VKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 185 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 226 (343)
..+-....+.|. .|...-+|...|+++++.+++..-
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 555555555542 223334556667777777776543
No 333
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.44 E-value=13 Score=26.77 Aligned_cols=97 Identities=8% Similarity=-0.009 Sum_probs=47.2
Q ss_pred ccCChhHHHHHHHHHHHcCC-CcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHH-HHhcccChhHH
Q 044084 212 RIGLYSKAEKVFIEMQQKGF-DKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD-MHGRAKNLRQL 289 (343)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a 289 (343)
..+++++++.+++.|.-... .+...++...+ +...|++++|.++|+++.+.+.. ...-..|+. ++.-.|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~--~p~~kAL~A~CL~al~Dp~-- 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGA--PPYGKALLALCLNAKGDAE-- 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCC--chHHHHHHHHHHHhcCChH--
Confidence 35666666666666655321 11222333332 44666777777777766655321 111111221 222233333
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 290 EKYTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 290 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
|..........|...+++.+.+.+.
T Consensus 96 --Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 96 --WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred --HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 5555555555566666666666665
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.38 E-value=29 Score=30.75 Aligned_cols=177 Identities=12% Similarity=0.078 Sum_probs=121.8
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (343)
....+++..++.+.+..-...+..+|...| -+-..|..++.+|... ..+....+|+++.+..+. |+..-..|...|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 456778888888888999999999998875 3566788888888887 667888999999987764 555555555555
Q ss_pred HhcCcHhHHHHHHHHHHhcCCCC--c---hhhHHHHHHHHhcCCcHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHccC
Q 044084 141 IEEGMVEKTLEVVESMKNAELNI--S---DCISCVIVNGFSKRRAYWAAVKVYEQLISQ-GCIPGQVTYASIINAYCRIG 214 (343)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~ 214 (343)
-+ ++...+...|.++...-++- + ...|.-+...- ..+.+....+..++... |...-...+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 55 88888888888887654421 1 12344444321 35666777777666654 33333445555567788889
Q ss_pred ChhHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 044084 215 LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245 (343)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (343)
++++|.+++..+.+++ ..|..+-..++..+
T Consensus 220 N~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 220 NWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred CHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 9999999999888875 44555555555443
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.60 E-value=21 Score=28.61 Aligned_cols=183 Identities=11% Similarity=0.098 Sum_probs=107.4
Q ss_pred chhhHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCCchHHHHHHHHHHhhccCc
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSG---CYCQIMEAFYKIGDSEKVAALFLECESR---KLDLTPSSTHMYKILCDSLGKSGR 75 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~~~ 75 (343)
.|++|+.-|.+..+........ ....++....+.+++++....|.++... .+.. +-+....|.++.-.+.+.+
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr-NySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR-NYSEKSINSILDYISTSKN 120 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHhhhhh
Confidence 5788999998888764333333 3455678888999999888888776421 1111 1124556777766666665
Q ss_pred HHHHHHHHHHHHhc--CCCCCh----HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHH
Q 044084 76 AFEILKFFRDMKEK--GILEDP----SVYASLICSFASIAEVKVAEELFKEAEEKGMLR-----------DLEVFLKLVL 138 (343)
Q Consensus 76 ~~~a~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~ 138 (343)
.+...++|+.-+.. ..+ +. .|-..|...|...+++....+++.++..+...- =..+|..-|.
T Consensus 121 m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55555444433221 001 11 123456677778888888888888876532111 1345667778
Q ss_pred HHHhcCcHhHHHHHHHHHHhcC-CCCchhhHHHHHHHH-----hcCCcHHHHHHH
Q 044084 139 MYIEEGMVEKTLEVVESMKNAE-LNISDCISCVIVNGF-----SKRRAYWAAVKV 187 (343)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~~ 187 (343)
+|....+-.+...+|++..... ..|.+... -+|+-| .+.|++++|..=
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhH
Confidence 8888887777778888765322 11333333 233333 446777776543
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.79 E-value=32 Score=30.15 Aligned_cols=90 Identities=12% Similarity=-0.011 Sum_probs=52.3
Q ss_pred hhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHH
Q 044084 70 LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKT 149 (343)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (343)
+...|+++.+...+...... +.....+...+++...+.|+++.|..+-+-|....++ ++.+........-..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 34556677666666554332 2234455666666666777777777776666665554 444444444444455566666
Q ss_pred HHHHHHHHhcCC
Q 044084 150 LEVVESMKNAEL 161 (343)
Q Consensus 150 ~~~~~~~~~~~~ 161 (343)
...|+++...+.
T Consensus 411 ~~~wk~~~~~~~ 422 (831)
T PRK15180 411 YHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHhccCC
Confidence 666666655443
No 337
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.44 E-value=20 Score=27.42 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=47.4
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCCc----hhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNIS----DCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGL 215 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 215 (343)
+.+.|++++|..-|......-+..+ ...|..-..++.+.+.++.|++--.+.++.+ +........-..+|.+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 4556666666666666555433221 1234444455666666666666666555543 1112222233445666666
Q ss_pred hhHHHHHHHHHHHc
Q 044084 216 YSKAEKVFIEMQQK 229 (343)
Q Consensus 216 ~~~a~~~~~~~~~~ 229 (343)
++.|+.-+..+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666664
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.38 E-value=24 Score=28.33 Aligned_cols=205 Identities=12% Similarity=0.123 Sum_probs=126.7
Q ss_pred CCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc---CC
Q 044084 16 AGIVLDSGCYCQIMEAF-YKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK---GI 91 (343)
Q Consensus 16 ~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~ 91 (343)
.+-.||+..=|..-..- .+...+++|+.-|++..+...........+.-.++....+.+++++..+.|.+++.. .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34567776555433322 244578999999999876543333222445566788999999999999999988642 11
Q ss_pred --CCChHhHHHHHHHHhcccCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC--
Q 044084 92 --LEDPSVYASLICSFASIAEVKVAEELFKEAEE----KGM-LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN-- 162 (343)
Q Consensus 92 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 162 (343)
..+..+.|.++.....+.+.+.....++.-.+ ..- ..--.+-..|...|...+.+.+...++.++.+.--.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 22455677777777777776666555543322 110 001123356778888888888888888887643110
Q ss_pred ---------CchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHH-----HccCChhHHHH
Q 044084 163 ---------ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG-CIPGQVTYASIINAY-----CRIGLYSKAEK 221 (343)
Q Consensus 163 ---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~-----~~~~~~~~a~~ 221 (343)
.-...|..=|..|....+-.....+|++...-. -.|.+.. ..+|+-| .+.|++++|..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHh
Confidence 112357777888888888888888888766542 2344333 3344444 35677777653
No 339
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.24 E-value=25 Score=28.53 Aligned_cols=131 Identities=9% Similarity=0.100 Sum_probs=84.5
Q ss_pred HhHHHHHHHHHHh-cCCCCchhhHHHHHHHHhc--CCcHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHccCChhHHHH
Q 044084 146 VEKTLEVVESMKN-AELNISDCISCVIVNGFSK--RRAYWAAVKVYEQLISQ-GCIPGQVTYASIINAYCRIGLYSKAEK 221 (343)
Q Consensus 146 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~ 221 (343)
+-+|+.+|+.... ..+.-|..+...+++.... ......-.++.+-+... +-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4566666663322 2233556666667766655 22333344444444433 346778888889999999999999999
Q ss_pred HHHHHHHc-CCCcChhhHHHHHHHHHccCChHHHHHHHHHH-----hhCCCCchHHHHHHH
Q 044084 222 VFIEMQQK-GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM-----KPKGCEPNVWIYNSL 276 (343)
Q Consensus 222 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m-----~~~~~~p~~~~~~~l 276 (343)
+++..... +...|...|..+|+.....|+..-...+.++= +..++..+...-.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 98887765 55678889999999999999977666665542 233444444443333
No 340
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.20 E-value=38 Score=30.51 Aligned_cols=185 Identities=10% Similarity=0.032 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044084 59 STHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVL 138 (343)
Q Consensus 59 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (343)
....|+.-+..-...|+++.+.-+|++..-.- ..-...|-..+......|+.+.+..++....+...+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 36778888888888899999888888875431 11233455555566666888888888877776554433332222222
Q ss_pred HHHhcCcHhHHHHHHHHHHhcCCCCchh-hHHHHHHHHhcCCcHHHHHH---HHHHHHHcCCCCCHhhHHHHHHH-----
Q 044084 139 MYIEEGMVEKTLEVVESMKNAELNISDC-ISCVIVNGFSKRRAYWAAVK---VYEQLISQGCIPGQVTYASIINA----- 209 (343)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~p~~~~~~~ll~~----- 209 (343)
..-..|+++.|..+++.+.+.- |+.. .-..-+....+.|..+.+.. ++...... .-+......+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHH
Confidence 3334578999999999887654 3321 11222344456677776663 22222221 1122222222211
Q ss_pred HHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccC
Q 044084 210 YCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249 (343)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (343)
+.-.++.+.|..++..+.+.- +++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 233578888888888888863 667777777777665554
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.16 E-value=34 Score=30.00 Aligned_cols=122 Identities=8% Similarity=0.025 Sum_probs=81.4
Q ss_pred hhccCcHHHHHH-HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhH
Q 044084 70 LGKSGRAFEILK-FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEK 148 (343)
Q Consensus 70 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (343)
....|+.-.|-+ ++..+....-.|+.... ....+...|+++.+.+.+...... +.....+...+++...+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 345566665544 44444444334444333 334566789999999888766553 23456788889999999999999
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC
Q 044084 149 TLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG 195 (343)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (343)
|...-+.|....+. +......-.-.....|-++++...|+++...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999877663 33333333333345677899999999987764
No 342
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=81.89 E-value=19 Score=26.94 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHcCCCcC--hhh-----HHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhH
Q 044084 216 YSKAEKVFIEMQQKGFDKC--VVA-----YSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQ 288 (343)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~--~~~-----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 288 (343)
.+.|..+|+.+.+..-.|. ... --..+..|.+.|.+++|.+++++... .|+......-+....+.++.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~-- 159 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP-- 159 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc--
Confidence 4566677776665432221 111 12345578899999999999999886 45555556666666665554
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 289 LEKYTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 289 a~~~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
|..++.-+.-..-.+...++++...
T Consensus 160 ---~h~~lqnFSy~~~~~ki~~~ve~~~ 184 (200)
T cd00280 160 ---AHPVLQNFSYSHFMQKMKSYVELVL 184 (200)
T ss_pred ---ccHHHHhccHHHHHHHHHHHHHHHh
Confidence 4444444433222333444444433
No 343
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.71 E-value=11 Score=31.26 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=34.4
Q ss_pred HHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHH
Q 044084 138 LMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQL 191 (343)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (343)
.-|.+.|.+++|+..|.......+ -+.+++..-..+|.+...+..|..=-...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 457777888888888877655442 25666777777777777776555444333
No 344
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=81.68 E-value=7.1 Score=21.77 Aligned_cols=37 Identities=5% Similarity=-0.037 Sum_probs=30.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 044084 297 SAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGV 333 (343)
Q Consensus 297 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 333 (343)
....+.|-..++..++++|.+.|+..++..|..++..
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3345678888999999999999999999988877653
No 345
>PRK09687 putative lyase; Provisional
Probab=81.47 E-value=28 Score=28.45 Aligned_cols=232 Identities=11% Similarity=0.006 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCH----HHHHHHHHHHHHcCCCCCHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEV----KVAEELFKEAEEKGMLRDLEVFLK 135 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~ 135 (343)
.......+.++...|. +.+...+..+... +|...-...+.+++..|+. +++...+..+... .++..+...
T Consensus 37 ~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 37 SLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred HHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3455555666666654 3333444444332 3445555556666666653 3455556555332 256666666
Q ss_pred HHHHHHhcCcH-----hHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 044084 136 LVLMYIEEGMV-----EKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAY 210 (343)
Q Consensus 136 l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 210 (343)
.+.++...+.. ..+.+.+...... ++..+-...+.++.+.++. .+...+-.+.+. ++..+-...+.++
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aL 183 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 66665554421 2233333332222 2333444556666666653 455555555543 3444444555555
Q ss_pred HccC-ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHH
Q 044084 211 CRIG-LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQL 289 (343)
Q Consensus 211 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 289 (343)
.+.+ +.+.+...+..+.. .++..+-...+.++.+.|+. .+...+-+..+.+ +.
T Consensus 184 g~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~~------------------- 237 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---TV------------------- 237 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---ch-------------------
Confidence 5542 23345555555553 34566666677777777763 4444444444432 11
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 044084 290 EKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFS 335 (343)
Q Consensus 290 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 335 (343)
....+.++...|.. +|+..+..+.... ||..+-...+.++.
T Consensus 238 --~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 238 --GDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred --HHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 11244556666764 6888888887743 47766555565554
No 346
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.97 E-value=55 Score=31.53 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc---hhhHHHHHHHHhcCCcH--HHHHHHHHHHHHcCCCCCHhhHHH-
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS---DCISCVIVNGFSKRRAY--WAAVKVYEQLISQGCIPGQVTYAS- 205 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~p~~~~~~~- 205 (343)
-|..|+..|...|+.++|+++|.+........+ ...+.-+++.+...+.. +-++++-+...+....-....++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 477899999999999999999998876431001 11233345544444443 555555555444321111111111
Q ss_pred -----------HHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHc
Q 044084 206 -----------IINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 247 (343)
Q Consensus 206 -----------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (343)
-+-.|......+-+..+++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122355666777888888888776545677777888777764
No 347
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.57 E-value=14 Score=24.49 Aligned_cols=78 Identities=10% Similarity=0.037 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHH
Q 044084 181 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAK 260 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (343)
.++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.+ ..||...|-+|.. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45566565555554311 1222222234566677777777665544 3566666665544 356666666666666
Q ss_pred HhhCC
Q 044084 261 MKPKG 265 (343)
Q Consensus 261 m~~~~ 265 (343)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66554
No 348
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.52 E-value=49 Score=30.67 Aligned_cols=196 Identities=11% Similarity=0.067 Sum_probs=110.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCCchHHHHHHHHHHhh-ccCcHHHHHHHHHHHHhcCCCCChH--
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECES-RKLDLTPSSTHMYKILCDSLG-KSGRAFEILKFFRDMKEKGILEDPS-- 96 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-- 96 (343)
+...|..||. .|++.++.+.+ ..++|. ....++-.+...+. ...+++.|...+++.....-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~-~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPR-QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 4455666654 34555665553 233322 11345556666666 5678999999999775543222221
Q ss_pred ---hHHHHHHHHhcccCHHHHHHHHHHHHHcC----CCCCHHHHHHH-HHHHHhcCcHhHHHHHHHHHHhcC---CCCch
Q 044084 97 ---VYASLICSFASIAEVKVAEELFKEAEEKG----MLRDLEVFLKL-VLMYIEEGMVEKTLEVVESMKNAE---LNISD 165 (343)
Q Consensus 97 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 165 (343)
.-..++..+.+.+... |...+++.++.- ..+-...+.-+ +..+...+++..|.+.++.+.... ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 1234556666665555 888888766532 11222333333 333334479999999998876432 22334
Q ss_pred hhHHHHHHHHh--cCCcHHHHHHHHHHHHHcC---------CCCCHhhHHHHHHHHH--ccCChhHHHHHHHHHH
Q 044084 166 CISCVIVNGFS--KRRAYWAAVKVYEQLISQG---------CIPGQVTYASIINAYC--RIGLYSKAEKVFIEMQ 227 (343)
Q Consensus 166 ~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 227 (343)
.++..++.+.. ..+.++++.+.++++.... ..|-..+|..+++.++ ..|+++.+...++.+.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444554443 3566677777777664321 1345566777776654 5677777766665554
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.49 E-value=22 Score=26.63 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHH---hcCCHHHHHHHHHHHHhC---CCCCCCchHHHHHHHHHHhhccCc--
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFY---KIGDSEKVAALFLECESR---KLDLTPSSTHMYKILCDSLGKSGR-- 75 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~~~-- 75 (343)
+.|.+..+.-...++ .|...++....++. +..+..++.+++++..++ -+..+|....++..+..++...+.
T Consensus 8 E~ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 455566655444443 45555554444443 334434455555444221 111112234566667766655432
Q ss_pred ---------HHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCC
Q 044084 76 ---------AFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM 126 (343)
Q Consensus 76 ---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (343)
+++|.+.|++.... .|+...|+.-+.... .|-+++.++.+.+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 44455555555443 677777877766653 34555556655543
No 350
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.97 E-value=43 Score=29.74 Aligned_cols=180 Identities=16% Similarity=0.195 Sum_probs=127.1
Q ss_pred CCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHH
Q 044084 92 LEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVI 171 (343)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (343)
..|.....+++..+.....+.-++.+..+|...| .+...+..++.+|... ..+.-..+|+++.+..+ .++..-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 3466778889999999999999999999999977 4788899999999998 55788899999888776 344444445
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCC-----CCHhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCcChhhHHHHHHHH
Q 044084 172 VNGFSKRRAYWAAVKVYEQLISQGCI-----PGQVTYASIINAYCRIGLYSKAEKVFIEMQQK-GFDKCVVAYSSMVAMY 245 (343)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 245 (343)
...|-+ ++...+..+|.++...=++ .-...|..+...- ..+.+....+...+... |...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555544 7888888888887654221 1122444444421 35677777777666643 4444456677777889
Q ss_pred HccCChHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 044084 246 GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDM 279 (343)
Q Consensus 246 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 279 (343)
....++.+|++++..+.+.. ..|...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 99999999999999888764 2355554455543
No 351
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=79.65 E-value=12 Score=27.03 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=9.1
Q ss_pred HHHhhccCcHHHHHHHHHHHHhc
Q 044084 67 CDSLGKSGRAFEILKFFRDMKEK 89 (343)
Q Consensus 67 i~~~~~~~~~~~a~~~~~~~~~~ 89 (343)
+..+.+.++.-.|.++++++.+.
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~ 49 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREE 49 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh
Confidence 33333333334444444444443
No 352
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.17 E-value=36 Score=28.43 Aligned_cols=119 Identities=10% Similarity=-0.019 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCcHhHHHHH
Q 044084 76 AFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE---EGMVEKTLEV 152 (343)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~ 152 (343)
.+.-+.++++.++.+. -+......++..+.+..+.+...+.++.+...... +...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3455677777776632 35556667777777778888888888888876543 67777777766554 2245666666
Q ss_pred HHHHHhc------CC----CCchhh-------HHHHHHHHhcCCcHHHHHHHHHHHHHcCC
Q 044084 153 VESMKNA------EL----NISDCI-------SCVIVNGFSKRRAYWAAVKVYEQLISQGC 196 (343)
Q Consensus 153 ~~~~~~~------~~----~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 196 (343)
|.+..+. +. .+...+ +.-+...+...|..+.|..+++-+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6554321 11 011111 22233344568888999999988888764
No 353
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=78.81 E-value=15 Score=26.45 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (343)
+.+.+.+.|++++.. -..++..+...++.-.|..+++.+.+.++..+..|...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344555666665543 33455666666666777777777777766655555444445554444
No 354
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.71 E-value=18 Score=25.12 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 183 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
+..+.++.+....+.|++.....-+++|-+.+++..|.++|+.++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444455555555556655555566666666666666666655544
No 355
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.58 E-value=20 Score=24.99 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 222 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
-++.+...++.|++.....-++++.+.+++..|.++|+-++.
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333333444445555555555555555555555555544443
No 356
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=78.34 E-value=6.2 Score=32.06 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044084 25 YCQIMEAFYKIGDSEKVAALFLECESRKLD 54 (343)
Q Consensus 25 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 54 (343)
|+.-|....+.||+++|+.++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445555555666666666666665555543
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.21 E-value=9.4 Score=23.96 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHH
Q 044084 34 KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKF 82 (343)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 82 (343)
...+-++|+..|....++...+. .-..++..|+.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544433321 1234444455555555555554443
No 358
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.21 E-value=43 Score=28.72 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcC--CCCChHhHHHHHHHHhcccCHHHHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKG--ILEDPSVYASLICSFASIAEVKVAEELFKEAE 122 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 122 (343)
..+.-+...|..+|+++.|++.|.+.+..- .+.....|-.+|..-.-.|+|..+.....+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 344455555555666666666665543321 11112223333333344455555444444443
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.68 E-value=30 Score=30.05 Aligned_cols=203 Identities=10% Similarity=-0.023 Sum_probs=102.5
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChH--hHHHHHHHHhcccCHHHHHHHHH
Q 044084 42 AALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPS--VYASLICSFASIAEVKVAEELFK 119 (343)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 119 (343)
.++++.+.+.|..++.....-+ +.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~-tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGI-SPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCC-CHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 6778888888887764332223 3344445666665 445555666555432 12234455667788776555543
Q ss_pred HHHHcCCCCCHH---HHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchh---hHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 120 EAEEKGMLRDLE---VFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDC---ISCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 120 ~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
.|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+.. -.+.+ ...+..|+.+-+.- +.+
T Consensus 90 ----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpL-h~A~~~~~~~~v~~----Ll~ 156 (413)
T PHA02875 90 ----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPL-HLAVMMGDIKGIEL----LID 156 (413)
T ss_pred ----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHH----HHh
Confidence 33221110 1123344455666654 444444555444322 22333 34445677654443 444
Q ss_pred cCCCCC---HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhh---HHHHHHHHHccCChHHHHHHHHHHhhCCCC
Q 044084 194 QGCIPG---QVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA---YSSMVAMYGKTGRIRDAMRLVAKMKPKGCE 267 (343)
Q Consensus 194 ~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 267 (343)
.|..++ ..-.+.+.. .+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+ +.+.+.+.|..
T Consensus 157 ~g~~~~~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad 227 (413)
T PHA02875 157 HKACLDIEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGAD 227 (413)
T ss_pred cCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcC
Confidence 554333 223333433 34556654 4455566676665432 123444344566654 45555667877
Q ss_pred chHH
Q 044084 268 PNVW 271 (343)
Q Consensus 268 p~~~ 271 (343)
++..
T Consensus 228 ~n~~ 231 (413)
T PHA02875 228 CNIM 231 (413)
T ss_pred cchH
Confidence 7764
No 360
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=76.66 E-value=30 Score=31.63 Aligned_cols=128 Identities=12% Similarity=0.106 Sum_probs=30.9
Q ss_pred CCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHH
Q 044084 198 PGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277 (343)
Q Consensus 198 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 277 (343)
.+......++..|.+.|-.+.+..+.+.+-..-. ...-|..-+.-+.++|+......+...+.+.....+......++
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll 480 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLL 480 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 4555667778888888888888888877665432 23456666777788888877777666666443332222222233
Q ss_pred HHHhcccChhHHHh----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHH
Q 044084 278 DMHGRAKNLRQLEK----YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAG 328 (343)
Q Consensus 278 ~~~~~~~~~~~a~~----~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 328 (343)
+......-...... |...-.. .+.|++.+|.+.+-.+...+..|...-..
T Consensus 481 ~~i~~~~~~~~~L~fla~yreF~~~-~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~ 534 (566)
T PF07575_consen 481 DNIGSPMLLSQRLSFLAKYREFYEL-YDEGDFREAASLLVSLLKSPIAPKSFWPL 534 (566)
T ss_dssp -------------------------------------------------------
T ss_pred HHhcchhhhhhhhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 22222111111111 2222221 23477788877777777766666554433
No 361
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.37 E-value=49 Score=28.40 Aligned_cols=66 Identities=8% Similarity=0.032 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc
Q 044084 23 GCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK 89 (343)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 89 (343)
..+.-+...|..+|+++.|++.|.+....- .........|..+|..-.-.|+|........+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYC-TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 357788999999999999999999865432 222333677888888888889998888887777654
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.17 E-value=6.4 Score=18.35 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHH
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
+..+...+...+++++|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444455555555544443
No 363
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.09 E-value=32 Score=26.16 Aligned_cols=89 Identities=9% Similarity=0.009 Sum_probs=54.1
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHH-----HHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 044084 172 VNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYAS-----IINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 246 (343)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (343)
...+...+++++|..-++..... |....+.. |.+.....|.+|+|..+++.....++. ......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 44566677777777777766643 22233332 334456677777777777766655422 222333445677
Q ss_pred ccCChHHHHHHHHHHhhCC
Q 044084 247 KTGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 247 ~~~~~~~a~~~~~~m~~~~ 265 (343)
..|+-++|+.-|.+..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777877777777664
No 364
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=75.55 E-value=62 Score=29.23 Aligned_cols=168 Identities=10% Similarity=0.004 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcC--hhhHHHHH
Q 044084 165 DCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC--VVAYSSMV 242 (343)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 242 (343)
..+|...+.--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+-|..++....+...+.. ...+.+.+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345666666667777777777777665421 011112233333333444777777777666555433322 22333322
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCchHHH-HHHHHHHHhcccChhHHHh-----------------HHHHH-----HHH
Q 044084 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWI-YNSLMDMHGRAKNLRQLEK-----------------YTTVI-----SAY 299 (343)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~-----------------~~~l~-----~~~ 299 (343)
.-..|+++.|..+++.+.+.- |+..- -..-+....+.|+.+.+.. ...+. ..+
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 234679999999999988762 44322 1222233444555544441 11111 123
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccc
Q 044084 300 NMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLS 338 (343)
Q Consensus 300 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 338 (343)
.-.++.+.|..++.++.+. +.++...|..+++...-.+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 3467888999999999885 4455666777777555443
No 365
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.53 E-value=27 Score=25.08 Aligned_cols=83 Identities=8% Similarity=0.047 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcC-----CCCChHhHHHHHHHHhcccC-HHHHHHHHHHHHHcCCCCCHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKG-----ILEDPSVYASLICSFASIAE-VKVAEELFKEAEEKGMLRDLEVFL 134 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 134 (343)
...|.++.-....+.+...+.+++.+.... -..+...|..++.+.++... --.+..+|..+.+.+.++++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 344555555555555665555555552210 01234456666666655444 334445555555555556666666
Q ss_pred HHHHHHHhc
Q 044084 135 KLVLMYIEE 143 (343)
Q Consensus 135 ~l~~~~~~~ 143 (343)
.++.++.+-
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 666655443
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.48 E-value=17 Score=22.90 Aligned_cols=12 Identities=17% Similarity=0.172 Sum_probs=4.7
Q ss_pred HHHHHhcCcHhH
Q 044084 137 VLMYIEEGMVEK 148 (343)
Q Consensus 137 ~~~~~~~~~~~~ 148 (343)
+.+|+..|++.+
T Consensus 50 ~qA~~e~Gkyr~ 61 (80)
T PF10579_consen 50 IQAHMEWGKYRE 61 (80)
T ss_pred HHHHHHHHHHHH
Confidence 333344443333
No 367
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.27 E-value=21 Score=27.11 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=18.6
Q ss_pred CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 197 IPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 197 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
.|+..+|..++.++...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555555555555555555555555555543
No 368
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.69 E-value=8.1 Score=31.42 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=27.0
Q ss_pred CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhH
Q 044084 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVY 98 (343)
Q Consensus 57 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (343)
+.+...|+..|....+.||+++|+.++++..+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 334455667777777777777777777777777655433343
No 369
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.83 E-value=80 Score=29.70 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=43.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (343)
++-+.+.+.+++|+++.+..... .+.......+...|..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44456677778887776554322 221112356677777777788888877777666543 334444444444444
Q ss_pred cC
Q 044084 109 AE 110 (343)
Q Consensus 109 ~~ 110 (343)
++
T Consensus 437 ~~ 438 (846)
T KOG2066|consen 437 DQ 438 (846)
T ss_pred cc
Confidence 43
No 370
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.54 E-value=62 Score=28.25 Aligned_cols=21 Identities=14% Similarity=-0.046 Sum_probs=11.5
Q ss_pred cCHHHHHHHHHHHHHcCCCCC
Q 044084 109 AEVKVAEELFKEAEEKGMLRD 129 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~ 129 (343)
.+.+.+...+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554444
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.22 E-value=21 Score=23.31 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=13.5
Q ss_pred HHHHhhccCcHHHHHHHHHHHHh
Q 044084 66 LCDSLGKSGRAFEILKFFRDMKE 88 (343)
Q Consensus 66 li~~~~~~~~~~~a~~~~~~~~~ 88 (343)
+.......|++++|.+.+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455556666666666666544
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.21 E-value=41 Score=30.42 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=54.2
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHH
Q 044084 72 KSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLE 151 (343)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (343)
-.|+...|...+.........-..+....|.+...+.|-...|..++.+..... ...+-++..+.++|....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356677777766665543222222334445555666666666666666655544 2355666677777777777777777
Q ss_pred HHHHHHhcCC
Q 044084 152 VVESMKNAEL 161 (343)
Q Consensus 152 ~~~~~~~~~~ 161 (343)
.|++..+...
T Consensus 698 ~~~~a~~~~~ 707 (886)
T KOG4507|consen 698 AFRQALKLTT 707 (886)
T ss_pred HHHHHHhcCC
Confidence 7777766554
No 373
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.98 E-value=51 Score=26.59 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=53.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh-HHHHHHHHHhcCCHHHHHHHH
Q 044084 234 CVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK-YTTVISAYNMAREFDMCVKFY 312 (343)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-~~~l~~~~~~~g~~~~a~~~~ 312 (343)
|+.....+...|.+.|++.+|...|-.- -.|+...+..++......|...+..- ....+-.|...|+...|...+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~ 164 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELF 164 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6778888899999999999998776432 23444444445555555555555433 566677788889999999988
Q ss_pred HHHHhC
Q 044084 313 NEFRMN 318 (343)
Q Consensus 313 ~~m~~~ 318 (343)
+...+.
T Consensus 165 ~~f~~~ 170 (260)
T PF04190_consen 165 DTFTSK 170 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887655
No 374
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.93 E-value=5.8 Score=27.82 Aligned_cols=29 Identities=10% Similarity=-0.013 Sum_probs=15.2
Q ss_pred CcHhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 044084 144 GMVEKTLEVVESMKNAELNISDCISCVIVNG 174 (343)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (343)
|.-.+|-.+|++|.+.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 334455556666666655555 35555443
No 375
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=71.86 E-value=59 Score=27.31 Aligned_cols=64 Identities=9% Similarity=-0.027 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 165 DCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIP---GQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
..+|..++..+.+.|.++.|...+..+...+..+ ++.....-.+.....|+..+|...++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467777777788888888888887777643111 233344445556667777777777776665
No 376
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.76 E-value=1e+02 Score=29.89 Aligned_cols=119 Identities=16% Similarity=0.167 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcH--HHHHHHHHHHHhcCCCCChHhHH--
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRA--FEILKFFRDMKEKGILEDPSVYA-- 99 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 99 (343)
-|..|+..|...|+.++|+++|.+..+..-..++.....+..+++-+.+.+.. +-.+++-+...+....-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47788888888888888888888876533112222223344445544444443 44444444444332111001111
Q ss_pred ----------HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044084 100 ----------SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142 (343)
Q Consensus 100 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (343)
..+-.+......+.+...++.+....-.++....+.++..|.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1122344555566666666666655444566666666666654
No 377
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.51 E-value=15 Score=21.81 Aligned_cols=45 Identities=7% Similarity=0.139 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 217 SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
+...++++.+... .-|-.-.-.+|.+|...|++++|.++++++.+
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444332 12333344556666666676666666666553
No 378
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=71.42 E-value=46 Score=30.62 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHH------HHHHHHHHHHhcCCCCChHhHHH
Q 044084 27 QIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAF------EILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 27 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
+|+.+|...|++.++.++++.....+-. +..-...+|..|+...+.|.++ .+.+.+++.. +.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~-~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG-DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC-CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 7999999999999999999988765421 1222567899999999999754 3333444333 4457778887
Q ss_pred HHHHHhc
Q 044084 101 LICSFAS 107 (343)
Q Consensus 101 l~~~~~~ 107 (343)
++.+...
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 7766544
No 379
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.31 E-value=34 Score=25.99 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 044084 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESMKN 158 (343)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (343)
|++.+|..++..+...|+.++|.++..++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556666666666666666666655555544
No 380
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.73 E-value=27 Score=31.98 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=27.7
Q ss_pred CchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 163 ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
.+...-.-++..|.+.|-.+.+.++.+.+-..- -...-|..-+.-+.+.|+...+..+-+.+.+
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445566777777777777777777665542 1233455666666777777666555555443
No 381
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=69.96 E-value=26 Score=22.44 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc
Q 044084 43 ALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK 89 (343)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 89 (343)
++|+-....|+..+ ...|-.++....-.=-++...++++.|-..
T Consensus 29 EL~ELa~~AGv~~d---p~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMD---PEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcC---hHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 67777777777777 456777777766666777777777777543
No 382
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.69 E-value=66 Score=26.94 Aligned_cols=119 Identities=11% Similarity=-0.007 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc---CCcHHHHHHH
Q 044084 111 VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK---RRAYWAAVKV 187 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~ 187 (343)
.+.-+.+++++.+..+ -+......+|..+.+..+.++..+-++++....+ -+...|...+..... .-.++...++
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3556778888888754 4788888899999999999999999999988754 355667777665544 3456677777
Q ss_pred HHHHHHc------CC----CCCHh-------hHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 044084 188 YEQLISQ------GC----IPGQV-------TYASIINAYCRIGLYSKAEKVFIEMQQKGF 231 (343)
Q Consensus 188 ~~~~~~~------~~----~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 231 (343)
|.+..+. +. .+... .+..+.......|..+.|..+++.+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6665432 11 01111 222233334578999999999999888754
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.22 E-value=19 Score=21.38 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=12.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 044084 205 SIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 205 ~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
.+|.++...|++++|.+++..+.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 384
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.08 E-value=18 Score=20.16 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 044084 113 VAEELFKEAEEKGMLRDL 130 (343)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~ 130 (343)
++..++++|.+.|+..+.
T Consensus 20 ~~~~~l~~l~~~g~~is~ 37 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFRISP 37 (48)
T ss_pred hHHHHHHHHHHcCcccCH
Confidence 333333333333333333
No 385
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=68.88 E-value=55 Score=25.76 Aligned_cols=109 Identities=9% Similarity=0.079 Sum_probs=52.9
Q ss_pred HHccCChhHHHHHHHHHHHcCCCc-Chh--hHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccCh
Q 044084 210 YCRIGLYSKAEKVFIEMQQKGFDK-CVV--AYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNL 286 (343)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 286 (343)
+...|+++.|.++.+..+++|.+. +.. ++-+++ .++.........+.|-..++.....+...-....-.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--------aeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmp 164 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--------AEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMP 164 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCC
Confidence 456677777777777777776432 110 111111 122222222333334333343333333332222223
Q ss_pred hHHHh--HHHHHHHH---------HhcCCHHHHHHHHHHHHhCCCCccHHH
Q 044084 287 RQLEK--YTTVISAY---------NMAREFDMCVKFYNEFRMNGGVIDRAM 326 (343)
Q Consensus 287 ~~a~~--~~~l~~~~---------~~~g~~~~a~~~~~~m~~~~~~p~~~~ 326 (343)
++... |..+...+ ...++...|+.++++..+.+.+....+
T Consensus 165 d~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~ 215 (230)
T PHA02537 165 DEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKK 215 (230)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHH
Confidence 33322 44444545 245678899999999987654444444
No 386
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=68.36 E-value=36 Score=25.26 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044084 111 VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (343)
.-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3344444444444443333333333333344333
No 387
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.30 E-value=65 Score=26.38 Aligned_cols=58 Identities=7% Similarity=0.062 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHH
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 226 (343)
++...+.|..+|.+.+|.++-++..... +.+...+..++..+...|+--.+.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344455555555555555555555443 334445555555555555544444444443
No 388
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.22 E-value=20 Score=20.50 Aligned_cols=36 Identities=8% Similarity=0.042 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 044084 295 VISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVG 332 (343)
Q Consensus 295 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 332 (343)
+.-++.+.|++++|.+..+.+++. .|+..-...|-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHH
Confidence 456778899999999999999884 566655444443
No 389
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.11 E-value=52 Score=24.80 Aligned_cols=55 Identities=5% Similarity=-0.011 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 251 IRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRM 317 (343)
Q Consensus 251 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 317 (343)
++.|+.+|+.+.+.-- ...+..-.++-+. -...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~--~~~~lhe~i~~li----------k~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFS--LPETLHEEIRKLI----------KEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcC--CcHHHHHHHHHHH----------HHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4677788877776522 2222222222222 12356678899999999999999876
No 390
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.88 E-value=37 Score=22.63 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=21.8
Q ss_pred HHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC
Q 044084 139 MYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG 195 (343)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (343)
.+...|++++|..+.+.. ..||...|.++.. .+.|..+.+..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344455555555544433 1244444433322 23344444444444444443
No 391
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.37 E-value=1.6e+02 Score=29.46 Aligned_cols=126 Identities=14% Similarity=0.126 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhc-C-CCCC-hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEK-G-ILED-PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKL 136 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (343)
...|...++.+-+.+..+.+.++-....+. + -.|. ..+++.+.+-....|.+-+|...+-.-... ..-......+
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRql 1060 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHH
Confidence 456777888888888888888877666654 1 1122 335666777777777776665543321110 0113345566
Q ss_pred HHHHHhcCcHh------------HHHH-HHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHH
Q 044084 137 VLMYIEEGMVE------------KTLE-VVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKV 187 (343)
Q Consensus 137 ~~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (343)
+..++.+|.++ +... +++...+..+......|+.|-..+...+++.+|-.+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 67777777653 3333 333333333322333566666666777777766543
No 392
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.56 E-value=2.3e+02 Score=30.95 Aligned_cols=50 Identities=6% Similarity=-0.094 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcccChhHHHh-------------HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044084 270 VWIYNSLMDMHGRAKNLRQLEK-------------YTTVISAYNMAREFDMCVKFYNEFRMNG 319 (343)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~-------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 319 (343)
..+|-...+.....|.++.|.. +-....-..+.|+...|+.++++-.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 3566667777777777777755 4555566678899999999999887653
No 393
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.45 E-value=82 Score=25.76 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=85.1
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHH-------HHHHHHhcccCHHHHHHHHHHHHH----cCCCCCHHHH
Q 044084 65 ILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYA-------SLICSFASIAEVKVAEELFKEAEE----KGMLRDLEVF 133 (343)
Q Consensus 65 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 133 (343)
.+.+-..+.+++++|+..+.++...|+..+..+.+ -+...|.+.|+....-+......+ ..-+......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 34556677888889999998888888777765543 455667777776555544433222 1111234444
Q ss_pred HHHHHHHHhc-CcHhHHHHHHHHHHhcCCCCch-----hhHHHHHHHHhcCCcHHHHHHHHHH----HHHcCCCCCHhhH
Q 044084 134 LKLVLMYIEE-GMVEKTLEVVESMKNAELNISD-----CISCVIVNGFSKRRAYWAAVKVYEQ----LISQGCIPGQVTY 203 (343)
Q Consensus 134 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~p~~~~~ 203 (343)
.+|+..+... ..++..+.+.....+....-.. ..-.-++..+.+.|.+.+|+.+... +++..-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 5555554433 2355555555554433221111 1122356666677777776665443 3333334544443
Q ss_pred HHH-HHHHHccCChhHHHHHHHHH
Q 044084 204 ASI-INAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 204 ~~l-l~~~~~~~~~~~a~~~~~~~ 226 (343)
..+ -.+|....++.++..-+...
T Consensus 168 hllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHH
Confidence 322 23455555555555444433
No 394
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.29 E-value=34 Score=30.90 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=41.2
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHH
Q 044084 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRL 257 (343)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (343)
.|+...|.+.+.........-..+....+.+...+.|..-.|-.++....... ...+.++..+.+++....++++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555544433211112223334444444455555555555444433 23344555555555555566666666
Q ss_pred HHHHhhC
Q 044084 258 VAKMKPK 264 (343)
Q Consensus 258 ~~~m~~~ 264 (343)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 6555543
No 395
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.09 E-value=1.3e+02 Score=28.12 Aligned_cols=116 Identities=9% Similarity=0.028 Sum_probs=58.6
Q ss_pred CcHhHHHHHHHHHHhcC-CCCc--hhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHH
Q 044084 144 GMVEKTLEVVESMKNAE-LNIS--DCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAE 220 (343)
Q Consensus 144 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 220 (343)
.+.+.|...+....... ..+. ..++..+.......+...++...++...... .+......-+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34566777776653332 1111 1122333333333322344444544433221 23333444445555677777777
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHh
Q 044084 221 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
..+..|.... .-...-..-+.+++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777764432 2233344456666666788888888777764
No 396
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.04 E-value=9.5 Score=26.79 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=21.4
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHH
Q 044084 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSF 105 (343)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (343)
.|.-..|-.+|++|+..|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34455677788888888877775 67676553
No 397
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.03 E-value=1.3e+02 Score=27.96 Aligned_cols=188 Identities=9% Similarity=-0.030 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHh-CCCCCC--hhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHhhccCcHH
Q 044084 4 QSKLHYYEKMKS-AGIVLD--SGCYCQIMEAFY-KIGDSEKVAALFLECESRKLDLTPSS--THMYKILCDSLGKSGRAF 77 (343)
Q Consensus 4 ~~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~ 77 (343)
..|++.++.+.+ ..++|. ..++-.+...+. ...+++.|+..+++.....-.++-.+ ...-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 346777777774 344443 345666777666 67899999999997754433322111 122335567777776655
Q ss_pred HHHHHHHHHHhcC----CCCChHhHHHH-HHHHhcccCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCcHh
Q 044084 78 EILKFFRDMKEKG----ILEDPSVYASL-ICSFASIAEVKVAEELFKEAEEKG---MLRDLEVFLKLVLMYI--EEGMVE 147 (343)
Q Consensus 78 ~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~ 147 (343)
|...+++..+.- ..+-...|..+ +..+...++...|.+.++.+.... ..|...++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 998888876641 11222233333 233333479999999998877643 2234455555555444 445567
Q ss_pred HHHHHHHHHHhcC---------CCCchhhHHHHHHHH--hcCCcHHHHHHHHHHHH
Q 044084 148 KTLEVVESMKNAE---------LNISDCISCVIVNGF--SKRRAYWAAVKVYEQLI 192 (343)
Q Consensus 148 ~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 192 (343)
++.+.++.+.... ..|...+|..+++.+ ...|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777663211 123455666666654 45778777766666554
No 398
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=62.94 E-value=52 Score=30.31 Aligned_cols=48 Identities=8% Similarity=0.085 Sum_probs=30.2
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHccCChh
Q 044084 170 VIVNGFSKRRAYWAAVKVYEQLISQ--GCIPGQVTYASIINAYCRIGLYS 217 (343)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~ 217 (343)
+++.+|..+|++..+.++++.+... |-+.-...+|..|+.+.+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 6777777777777777777776654 22222345666666666666544
No 399
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.79 E-value=1.7e+02 Score=29.28 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHh----H
Q 044084 23 GCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSV----Y 98 (343)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~ 98 (343)
..|...++.+-+.+-.+.+.++-....+.-.+.+|....+++++.+.....|.+.+|.+.+-+ .||..+ .
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcL 1057 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHH
Confidence 347788889999999999999887777665555566567888888888899988888766533 244433 4
Q ss_pred HHHHHHHhcccCHH------------HHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHH
Q 044084 99 ASLICSFASIAEVK------------VAEE-LFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVV 153 (343)
Q Consensus 99 ~~l~~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (343)
..++..++.+|.++ +... +++...+....-....|+.|-..+...+++.+|-.+.
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 44555566666543 3344 4444444433334667888888888889988876654
No 400
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.69 E-value=55 Score=23.57 Aligned_cols=81 Identities=10% Similarity=0.092 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhcCC-----CCchhhHHHHHHHHhcCCc-HHHHHHHHHHHHHcCCCCCHhhHHHH
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNAEL-----NISDCISCVIVNGFSKRRA-YWAAVKVYEQLISQGCIPGQVTYASI 206 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l 206 (343)
.+.++......+++.-.+.+++.+..... ..+...|.+++.+.....- --.+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44455544555555555555554421110 1233456666666655444 33455666666666666666666666
Q ss_pred HHHHHcc
Q 044084 207 INAYCRI 213 (343)
Q Consensus 207 l~~~~~~ 213 (343)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665543
No 401
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=61.92 E-value=1.5e+02 Score=28.46 Aligned_cols=222 Identities=10% Similarity=-0.025 Sum_probs=115.0
Q ss_pred hhccCcHHHHHHHHHHHHhcCCCCChH-------hHHHHHH-HHhcccCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 044084 70 LGKSGRAFEILKFFRDMKEKGILEDPS-------VYASLIC-SFASIAEVKVAEELFKEAEEK----GMLRDLEVFLKLV 137 (343)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 137 (343)
.....++.+|..++.++...-..|+.. .++.+-. .....|+++.+.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888876542222221 2333322 223457888888887766653 2234566777888
Q ss_pred HHHHhcCcHhHHHHHHHHHHhcCCCCchhh---HHHHH--HHHhcCCcHH--HHHHHHHHHHHc-----CC-CCCHhhHH
Q 044084 138 LMYIEEGMVEKTLEVVESMKNAELNISDCI---SCVIV--NGFSKRRAYW--AAVKVYEQLISQ-----GC-IPGQVTYA 204 (343)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~~~~~--~a~~~~~~~~~~-----~~-~p~~~~~~ 204 (343)
.+..-.|++++|..+.....+....-+... |..+. ..+..+|+.. .....|...... .. .+-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999998877665422222222 33332 2344566332 233333333222 10 12223444
Q ss_pred HHHHHHHcc-CChhHHHHHHHHHHHcCCCcChh--hHHHHHHHHHccCChHHHHHHHHHHhhCC----CCchHHHHHHHH
Q 044084 205 SIINAYCRI-GLYSKAEKVFIEMQQKGFDKCVV--AYSSMVAMYGKTGRIRDAMRLVAKMKPKG----CEPNVWIYNSLM 277 (343)
Q Consensus 205 ~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~ 277 (343)
.++.++.+. +...++..-++--......|-.. .+..|+......|+.++|...++++.... ..++...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555541 11122222222111211111111 12367788889999999999888887542 233333333344
Q ss_pred HH--HhcccChhHHHh
Q 044084 278 DM--HGRAKNLRQLEK 291 (343)
Q Consensus 278 ~~--~~~~~~~~~a~~ 291 (343)
.. ....|+...+..
T Consensus 665 ~~~lwl~qg~~~~a~~ 680 (894)
T COG2909 665 KLILWLAQGDKELAAE 680 (894)
T ss_pred hHHHhcccCCHHHHHH
Confidence 43 234566555544
No 402
>PRK09462 fur ferric uptake regulator; Provisional
Probab=61.28 E-value=59 Score=23.43 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044084 110 EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144 (343)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (343)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44555666666665554445444444444444444
No 403
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.25 E-value=48 Score=22.39 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=43.2
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHH
Q 044084 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRL 257 (343)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (343)
....++|..+.+.+...+. -...+--+-+..+.+.|++++|. ..- .....||...|-+|.. .+.|-.+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~-~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLP-QCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHH-TTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhc-ccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 3456777777777777643 12222223344567778887771 111 1223466666655544 467777777777
Q ss_pred HHHHhhCC
Q 044084 258 VAKMKPKG 265 (343)
Q Consensus 258 ~~~m~~~~ 265 (343)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77776654
No 404
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=61.02 E-value=72 Score=24.31 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=39.1
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCC-chHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 044084 16 AGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECES----RKLDLTP-SSTHMYKILCDSLGKSGRAFEILKFFRDMK 87 (343)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 87 (343)
.|..++...++.++..+.+..-...-...+-.++. +++..+- .+......=+..|-+.||+.+.-.+|-...
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~ 78 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK 78 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH
Confidence 46678888888888887766544444444444433 3333220 012222233456666777776666655543
No 405
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=60.92 E-value=1.1e+02 Score=26.61 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=52.3
Q ss_pred HcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHH--------HHccCChHHHHHHHHHHhhC
Q 044084 193 SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAM--------YGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 193 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~m~~~ 264 (343)
...+.||.++.+.+...++..-..+-...+|+-..+.+ .|=...+-.+|-. -.+...-+++.++++.|...
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 34578888888888887777777888888888877765 3333333332211 11233456777888777654
Q ss_pred CCCchHHHHHHHHHHHh
Q 044084 265 GCEPNVWIYNSLMDMHG 281 (343)
Q Consensus 265 ~~~p~~~~~~~l~~~~~ 281 (343)
--.-|..-+-+|.+-|+
T Consensus 255 L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYS 271 (669)
T ss_pred cccccchhHHHHHHHHh
Confidence 21224444555555443
No 406
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=60.33 E-value=1.2e+02 Score=26.64 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccc
Q 044084 292 YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQ 339 (343)
Q Consensus 292 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 339 (343)
...|+.-|...|+..+|.+.++++-.-- ---...+.+++.+..+.|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d 558 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGD 558 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCc
Confidence 7788888999999999988887763211 1133456666666666554
No 407
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=60.21 E-value=33 Score=21.75 Aligned_cols=14 Identities=21% Similarity=0.180 Sum_probs=6.1
Q ss_pred HHhcCCHHHHHHHH
Q 044084 32 FYKIGDSEKVAALF 45 (343)
Q Consensus 32 ~~~~~~~~~a~~~~ 45 (343)
.++.|+++-...++
T Consensus 4 A~~~~~~~~~~~ll 17 (89)
T PF12796_consen 4 AAQNGNLEILKFLL 17 (89)
T ss_dssp HHHTTTHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 34445544444333
No 408
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.74 E-value=77 Score=24.24 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=48.1
Q ss_pred HHHhcccCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc
Q 044084 103 CSFASIAEVKVAEELFKEAEEKGMLR--DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (343)
..+...++++.|+..++......-.. ...+--.|.+.....|.+|+|+..++.....+.. ......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 44556667777776666655431110 1122223445556666677777766666544321 1112233455666666
Q ss_pred HHHHHHHHHHHHHcC
Q 044084 181 YWAAVKVYEQLISQG 195 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~ 195 (343)
-++|..-|.+....+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 667766666666553
No 409
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.16 E-value=32 Score=19.69 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=15.0
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCchHHH
Q 044084 241 MVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWI 272 (343)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 272 (343)
+.-++.+.|++++|.+..+.+.+. .|+...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 334455666666666666665553 444443
No 410
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.91 E-value=89 Score=25.83 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc----------CCcHHHH
Q 044084 115 EELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK----------RRAYWAA 184 (343)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 184 (343)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+.+++.+|+.+..... -|..++..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-----rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-----RFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-----hhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46788888888889888888888888888888999999998875322 25555555543 6888888
Q ss_pred HHHHHH
Q 044084 185 VKVYEQ 190 (343)
Q Consensus 185 ~~~~~~ 190 (343)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 887765
No 411
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=58.68 E-value=1.6e+02 Score=27.50 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=27.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (343)
.|- +|--|.++|++++|.++..+.... .......+...+..+...
T Consensus 114 ~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 453 466677888888888888554433 344455666777777665
No 412
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=58.49 E-value=48 Score=21.52 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccC
Q 044084 36 GDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSG 74 (343)
Q Consensus 36 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 74 (343)
-+.+++.++++.++.+| ..+|..+..++...+
T Consensus 48 t~~~k~~~Lld~L~~RG-------~~AF~~F~~aL~~~~ 79 (90)
T cd08332 48 TSFSQNVALLNLLPKRG-------PRAFSAFCEALRETS 79 (90)
T ss_pred CcHHHHHHHHHHHHHhC-------hhHHHHHHHHHHhcC
Confidence 44555666666666555 235555555554433
No 413
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=58.36 E-value=31 Score=20.78 Aligned_cols=47 Identities=21% Similarity=0.199 Sum_probs=21.5
Q ss_pred ChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044084 94 DPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYI 141 (343)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (343)
+...++.++..+++..-.+.+...+.+..+.|. .+..+|..-++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 334444555555554445555555555555443 24444444444433
No 414
>PRK09462 fur ferric uptake regulator; Provisional
Probab=58.07 E-value=64 Score=23.25 Aligned_cols=59 Identities=8% Similarity=0.082 Sum_probs=34.0
Q ss_pred HHhCCCCCCCchHHHHHHHHHHhhcc-CcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC
Q 044084 48 CESRKLDLTPSSTHMYKILCDSLGKS-GRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE 110 (343)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (343)
+.+.|+..+ ..-..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 8 l~~~glr~T----~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVT----LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCC----HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 445566554 3344555555543 3566777788887777655555554444555555443
No 415
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=57.91 E-value=10 Score=22.62 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=11.6
Q ss_pred chhhHHHHHHHHHhCC-CCCC
Q 044084 2 NSQSKLHYYEKMKSAG-IVLD 21 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~-~~~~ 21 (343)
|++.|+..|..+...| ++|+
T Consensus 40 d~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChh
Confidence 4566667776666644 4433
No 416
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.85 E-value=1.7e+02 Score=27.53 Aligned_cols=56 Identities=9% Similarity=-0.101 Sum_probs=26.9
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHH
Q 044084 170 VIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 226 (343)
.-+......++++.+...+..|.... .-...-.-.+.+++...|+.++|...|..+
T Consensus 317 ~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 317 RRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334445556665555555554321 112222333445544556666666655554
No 417
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=57.28 E-value=41 Score=20.29 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhc
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFAS 107 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (343)
..++.++...++-.-.+.++..+.+....|. .+..+|.--++.+++
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4455555555555555566666666555553 244444444444433
No 418
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=56.63 E-value=87 Score=23.89 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=42.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCC--------------cChhhHHHHHHHHHccCChHHHHHHHHH
Q 044084 204 ASIINAYCRIGLYSKAEKVFIEMQQKGFD--------------KCVVAYSSMVAMYGKTGRIRDAMRLVAK 260 (343)
Q Consensus 204 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (343)
.+++-.|.+.-++.+..++++.|.+..+. +--..-|.....+.+.|.++.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34566677888888888888888765321 2234567778889999999999998874
No 419
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.16 E-value=61 Score=21.95 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
|..++..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666555
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.82 E-value=1e+02 Score=24.45 Aligned_cols=59 Identities=15% Similarity=0.024 Sum_probs=33.2
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCcHhHHHHHHHHHHh
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE-EGMVEKTLEVVESMKN 158 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 158 (343)
.+++.+-+.++++++...+.++...+...+..-.+.|..+|-. .|....+++++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3455566667777777777777776666666666666666532 2444455555555443
No 421
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=55.74 E-value=22 Score=23.28 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=31.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCCh
Q 044084 33 YKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDP 95 (343)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (343)
.+..+++.+..+|..+.++|.-.. ..+..+...+..-++.+-- ..+..=++..+.|++
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gll~e----~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGRCDE----TNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCCCcc----chHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 344566677777777777775443 1233444544455555544 555544444455544
No 422
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.52 E-value=27 Score=23.80 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=34.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccc
Q 044084 295 VISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIE 341 (343)
Q Consensus 295 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 341 (343)
++..+...+..-.|.++++.+.+.+..++..|....++.+.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44455555666678899999999888888888666777777777553
No 423
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.24 E-value=1.2e+02 Score=25.12 Aligned_cols=81 Identities=11% Similarity=0.227 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHH
Q 044084 220 EKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAY 299 (343)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~ 299 (343)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+.. |..-|..|+..|+. ...+++--
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs---------mlil~Re~ 328 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS---------MLILVRER 328 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH---------HHHHHHHH
Confidence 47888888889999988888888888888889999999999886 33347778777765 22333444
Q ss_pred HhcCCHHHHHHHHHH
Q 044084 300 NMAREFDMCVKFYNE 314 (343)
Q Consensus 300 ~~~g~~~~a~~~~~~ 314 (343)
.-.|++...+++++.
T Consensus 329 il~~DF~~nmkLLQ~ 343 (370)
T KOG4567|consen 329 ILEGDFTVNMKLLQN 343 (370)
T ss_pred HHhcchHHHHHHHhc
Confidence 456888888887765
No 424
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=55.15 E-value=1.3e+02 Score=25.29 Aligned_cols=17 Identities=6% Similarity=0.313 Sum_probs=8.3
Q ss_pred cccCHHHHHHHHHHHHH
Q 044084 107 SIAEVKVAEELFKEAEE 123 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~ 123 (343)
+.|+..+|.+.++.+.+
T Consensus 287 klGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhHHHHHHHHHHHhh
Confidence 34555555555544443
No 425
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=55.14 E-value=85 Score=23.32 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=20.6
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhh
Q 044084 122 EEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCI 167 (343)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 167 (343)
.+.|+..+.. -..++..+...++.-.|.++++.+.+.+..++..|
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcch
Confidence 3445543322 22334444444445555666666655554444333
No 426
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=54.93 E-value=54 Score=20.99 Aligned_cols=36 Identities=14% Similarity=0.353 Sum_probs=20.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcH
Q 044084 34 KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRA 76 (343)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 76 (343)
...+.+++.++++.++.+| ..+|..+..++...|..
T Consensus 42 ~~tr~~q~~~LLd~L~~RG-------~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 42 AGSRRDQARQLLIDLETRG-------KQAFPAFLSALRETGQT 77 (84)
T ss_pred CCCHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHhcCch
Confidence 3345566666666666665 24566656555555543
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.31 E-value=1.4e+02 Score=25.71 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=26.7
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCCchh--hHHHHHHHHhc--CCcHHHHHHHHHHHHHc
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNISDC--ISCVIVNGFSK--RRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 194 (343)
+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33556666666666666554 333322 23333333322 44555666666655443
No 428
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=53.47 E-value=38 Score=23.05 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=21.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCC
Q 044084 206 IINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250 (343)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (343)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 334444444455555566555555444444444444444444443
No 429
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.12 E-value=2.1e+02 Score=27.22 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVL---DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEI 79 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 79 (343)
+++|+.+-+... |..| -......++..+.-.|++++|-...-.|.... ..-|..-+..+...++....
T Consensus 372 yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~-------~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 372 YEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNN-------AAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcch-------HHHHHHHHHHhccccccchh
Confidence 455555554433 2333 34467778888889999999988887775543 45666666666666655433
Q ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHH---H--------------HcCCCCCHHHHHHHHHHHHh
Q 044084 80 LKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA---E--------------EKGMLRDLEVFLKLVLMYIE 142 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~--------------~~~~~~~~~~~~~l~~~~~~ 142 (343)
..+ +.......+...|..++..+.. .+...-.++.... . +..-. +...-..|+..|..
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVLAHLYLY 517 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHHHHHHHH
Confidence 222 2222122345567777766665 2222222111110 0 01111 23344558888999
Q ss_pred cCcHhHHHHHHHHHHhc
Q 044084 143 EGMVEKTLEVVESMKNA 159 (343)
Q Consensus 143 ~~~~~~a~~~~~~~~~~ 159 (343)
.+++..|++++-..++.
T Consensus 518 d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQDK 534 (846)
T ss_pred ccChHHHHHHHHhccCh
Confidence 99999999988777653
No 430
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=52.98 E-value=7.8 Score=21.98 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=13.6
Q ss_pred chhhHHHHHHHHHhCC-CCCCh
Q 044084 2 NSQSKLHYYEKMKSAG-IVLDS 22 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~-~~~~~ 22 (343)
|++.|+..|..+...| +||+.
T Consensus 28 d~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 28 DYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp -CCHHHHHHHHCCCTT-S-CCC
T ss_pred CHHHHHHHHHHHHHcCCCChHh
Confidence 5677888888887766 55543
No 431
>PRK09857 putative transposase; Provisional
Probab=52.92 E-value=1.3e+02 Score=24.82 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=44.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCch
Q 044084 203 YASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPN 269 (343)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 269 (343)
+..++....+.++.++..++++.+.+. .+......-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 455666556667777777777777665 233334444666667677777778888888888887755
No 432
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=52.84 E-value=1.2e+02 Score=24.17 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=41.2
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhc-ccCHHHHHHHHHHHHH
Q 044084 64 KILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFAS-IAEVKVAEELFKEAEE 123 (343)
Q Consensus 64 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 123 (343)
..+++..-+.++++++.+.+.++...+...+..--+.+-.+|-. .|....+++++..+..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 44677778889999999999999988777777777777666632 3555566666665554
No 433
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=52.39 E-value=24 Score=24.31 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccc
Q 044084 294 TVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIE 341 (343)
Q Consensus 294 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 341 (343)
.++......+..-.|.++++.+.+.+...+..|...-++.+.+.|-+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 345555566667789999999999998889988666777777777543
No 434
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=52.35 E-value=23 Score=17.76 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHH
Q 044084 304 EFDMCVKFYNEFRMNGGVIDRAMAGI 329 (343)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~p~~~~~~~ 329 (343)
.++.|..+|++.+.. .|++.+|-.
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 578899999999884 688887654
No 435
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.02 E-value=1.8e+02 Score=26.08 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=38.8
Q ss_pred CCHhhH-HHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHc--cCChHHHHHHHHHHhhC-CCCchHHHH
Q 044084 198 PGQVTY-ASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK--TGRIRDAMRLVAKMKPK-GCEPNVWIY 273 (343)
Q Consensus 198 p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~-~~~p~~~~~ 273 (343)
|+..|+ +.++..+.+.|-..+|..++..+.... +|....|..+|..-.. .-+..-+..+|+.|... | .|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 444333 234455555555555555555555542 4445555555442211 11244455555555433 3 344444
Q ss_pred HHHHHHHhcccChh
Q 044084 274 NSLMDMHGRAKNLR 287 (343)
Q Consensus 274 ~~l~~~~~~~~~~~ 287 (343)
.-.+.-=...|..+
T Consensus 534 ~~y~~~e~~~g~~e 547 (568)
T KOG2396|consen 534 MDYMKEELPLGRPE 547 (568)
T ss_pred HHHHHhhccCCCcc
Confidence 44333333444433
No 436
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.85 E-value=1e+02 Score=23.25 Aligned_cols=42 Identities=17% Similarity=0.408 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 044084 181 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (343)
+++|...|++.... .|+..+|+.-+.... +|-++..++.+++
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 34444555554444 566666666665432 3445555555543
No 437
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.50 E-value=1.4e+02 Score=24.64 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
-...+..+...|++..|++++.+..+
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555666666666666665544
No 438
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=51.21 E-value=1.3e+02 Score=24.46 Aligned_cols=190 Identities=15% Similarity=0.115 Sum_probs=104.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHH----hhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhc--
Q 044084 34 KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDS----LGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFAS-- 107 (343)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 107 (343)
..+++..+...+......+.. .....+... .....+...|.++|+..-+.|.. .....|...+..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~------~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~ 123 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA------AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGR 123 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh------HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCC
Confidence 445666666666666553322 122222222 23334577778877766666532 223334444433
Q ss_pred --ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------cHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc-
Q 044084 108 --IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG-------MVEKTLEVVESMKNAELNISDCISCVIVNGFSK- 177 (343)
Q Consensus 108 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 177 (343)
..+..+|...+....+.|..+.......+...|..-. +...|...|.+....+. ++ ....+...|..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~-~~--a~~~lg~~y~~G 200 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGN-PD--AQLLLGRMYEKG 200 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcC-HH--HHHHHHHHHHcC
Confidence 3477888888888888775432233444444444321 23368888888777663 22 33333333322
Q ss_pred ---CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC---------------ChhHHHHHHHHHHHcCCCcChhhHH
Q 044084 178 ---RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIG---------------LYSKAEKVFIEMQQKGFDKCVVAYS 239 (343)
Q Consensus 178 ---~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (343)
..++.+|...|....+.|. ......+- .+...| +...|...+......+.+.......
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 4477888888888887764 22222222 333333 7778888888887777555444444
No 439
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.11 E-value=67 Score=20.91 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=13.8
Q ss_pred HHHHHHhcCcHhHHHHHHHHHH
Q 044084 136 LVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
+.......|++++|...+++..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3445556677777777766654
No 440
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.73 E-value=1.1e+02 Score=24.41 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=34.0
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHc----C-CCCCHhhHHHHHHHHHccCChhHHHHHHHHH
Q 044084 170 VIVNGFSKRRAYWAAVKVYEQLISQ----G-CIPGQVTYASIINAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 226 (343)
.+..-|...|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666677777777777666421 2 2344455566666666777777666555444
No 441
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.71 E-value=2.3e+02 Score=26.91 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
|..+..+|....+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 566778888888888888888888774
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.61 E-value=1.2e+02 Score=24.31 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=23.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHc----C-CCcChhhHHHHHHHHHccCChHHHHHH
Q 044084 206 IINAYCRIGLYSKAEKVFIEMQQK----G-FDKCVVAYSSMVAMYGKTGRIRDAMRL 257 (343)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (343)
+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344455556666666555555321 1 112223334444444555555544443
No 443
>PF13934 ELYS: Nuclear pore complex assembly
Probab=50.15 E-value=1.2e+02 Score=23.78 Aligned_cols=55 Identities=7% Similarity=-0.033 Sum_probs=24.5
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 136 LVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
++..+...|+.+.|+.+++...-... +......++.. ..++.+.+|..+-+...+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHHhCch
Confidence 45555555666666665555432111 11112222222 344556666555544443
No 444
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=49.55 E-value=79 Score=21.29 Aligned_cols=22 Identities=18% Similarity=0.570 Sum_probs=11.8
Q ss_pred HHHHHHHhcCcHhHHHHHHHHH
Q 044084 135 KLVLMYIEEGMVEKTLEVVESM 156 (343)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~ 156 (343)
.++..|...++.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666666554
No 445
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.43 E-value=93 Score=24.25 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044084 3 SQSKLHYYEKMKSAGIVLDS-----GCYCQIMEAFYKIGDSEKVAALFLECESRKLDLT 56 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 56 (343)
.+.|++.|++..+..-.|.. ...-.+.....+.|+.++|.+.|..+...+-.+.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
No 446
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.27 E-value=35 Score=23.45 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=24.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccC
Q 044084 240 SMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN 285 (343)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 285 (343)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3444455555556666666666666555555555555555555543
No 447
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=48.90 E-value=94 Score=22.01 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=19.8
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcCCC
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKGML 127 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 127 (343)
+..++-.+...|+++.|+.+.+.++++|..
T Consensus 51 l~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 51 LMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 444555666777777777777777776653
No 448
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=47.87 E-value=74 Score=20.49 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044084 151 EVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192 (343)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (343)
++|+-....|+..|...|..+++....+-.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444443
No 449
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=47.70 E-value=2.1e+02 Score=25.60 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHh----HHHHHHHHhccc-C
Q 044084 36 GDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSV----YASLICSFASIA-E 110 (343)
Q Consensus 36 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~-~ 110 (343)
.++++|+++.++..+.+...+ -|-.-.|.++|.++.+.|+.||..| ....+..|+-.| .
T Consensus 208 ~~ldeal~~~~~a~~~~~~~S----------------Ig~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t 271 (545)
T TIGR01228 208 DSLDEALARAEEAKAEGKPIS----------------IGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYT 271 (545)
T ss_pred CCHHHHHHHHHHHHHcCCceE----------------EEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCC
Confidence 456677777766666554332 2233456777888888888877654 223344465555 4
Q ss_pred HHHHHHH
Q 044084 111 VKVAEEL 117 (343)
Q Consensus 111 ~~~a~~~ 117 (343)
++++.++
T Consensus 272 ~ee~~~l 278 (545)
T TIGR01228 272 VEDADKL 278 (545)
T ss_pred HHHHHHH
Confidence 5555444
No 450
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=46.95 E-value=61 Score=19.27 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=6.5
Q ss_pred cCcHHHHHHHHHHH
Q 044084 73 SGRAFEILKFFRDM 86 (343)
Q Consensus 73 ~~~~~~a~~~~~~~ 86 (343)
.|++-+|.++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 44455555555544
No 451
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.47 E-value=1.9e+02 Score=24.93 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=40.2
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHH--ccCChhHHHHHHHHHHHc
Q 044084 172 VNGFSKRRAYWAAVKVYEQLISQGCIPGQV--TYASIINAYC--RIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 229 (343)
+..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455789999999999999887 555554 3444555554 456788899988887765
No 452
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.09 E-value=90 Score=20.99 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=10.9
Q ss_pred HHHHhhccCcHHHHHHHHHHH
Q 044084 66 LCDSLGKSGRAFEILKFFRDM 86 (343)
Q Consensus 66 li~~~~~~~~~~~a~~~~~~~ 86 (343)
++..|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555556666666555554
No 453
>PRK14700 recombination factor protein RarA; Provisional
Probab=45.57 E-value=1.7e+02 Score=24.15 Aligned_cols=155 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhcc---CcHHHHH
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKS---GRAFEIL 80 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~ 80 (343)
++|++.+-.+..-+.+--..+....+......+...--.+.+++...+....-..+-..+-.+|+++.++ .+++.|+
T Consensus 67 ~~al~~ia~~a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAl 146 (300)
T PRK14700 67 DGLYNAMHNYNEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAI 146 (300)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHH
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHhccc-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHH
Q 044084 81 KFFRDMKEKGILEDPSVYASLICSFASIA-----EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVES 155 (343)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (343)
-++.+|++.|-.|....-..++.+.-..| -...|...++....-|.+--........-.++..-+-..+...+..
T Consensus 147 YyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y~A~~~ 226 (300)
T PRK14700 147 FWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQ 226 (300)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q ss_pred HHh
Q 044084 156 MKN 158 (343)
Q Consensus 156 ~~~ 158 (343)
..+
T Consensus 227 A~~ 229 (300)
T PRK14700 227 AQQ 229 (300)
T ss_pred HHH
No 454
>PRK12798 chemotaxis protein; Reviewed
Probab=45.33 E-value=2.1e+02 Score=24.97 Aligned_cols=191 Identities=11% Similarity=0.026 Sum_probs=92.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHH-hcccCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCcHhHH
Q 044084 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSF-ASIAEVKVAEELFKEAEEKGML--RDLEVFLKLVLMYIEEGMVEKT 149 (343)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 149 (343)
.|+..++.+.+..+.....++....|-.|+.+- ....+...|++.|++..-.-+. ........-+......|+.++.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 566777777777776665666666666666543 3445677777777766543211 1223334444555667777666
Q ss_pred HHHHHHHHhcCC-CCchh-hHHHHHHHHhcCC---cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHH
Q 044084 150 LEVVESMKNAEL-NISDC-ISCVIVNGFSKRR---AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFI 224 (343)
Q Consensus 150 ~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 224 (343)
..+-.....+-. .|-.. .+..+...+.+.+ ..+....++..|... --...|..+.+.-.-.|+.+-|.-.-.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~---~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPE---RQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCch---hHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 555444333211 11111 1122222333322 223333333332211 113456666666666777776666666
Q ss_pred HHHHcCCCcC-----hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCc
Q 044084 225 EMQQKGFDKC-----VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEP 268 (343)
Q Consensus 225 ~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 268 (343)
+.....-..+ ...|..+.. .-..+++++.+.+..+-...+.|
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~--v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAAL--VASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHc--cCcccHHHHHHHHhcCChhhCCh
Confidence 5554421111 112222211 12344666666666665544444
No 455
>PRK10941 hypothetical protein; Provisional
Probab=45.12 E-value=1.7e+02 Score=23.85 Aligned_cols=78 Identities=8% Similarity=-0.060 Sum_probs=52.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCC-CCchHHHHHHHHHHHh
Q 044084 203 YASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG-CEPNVWIYNSLMDMHG 281 (343)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~ 281 (343)
.+.+-.+|.+.++++.|.++.+.+.... |.++.-+.--.-.|.+.|.+..|..=++..++.- -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3445566788888888888888888764 4455556666667888888888888777776542 2445555555554443
No 456
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=44.95 E-value=1e+02 Score=21.41 Aligned_cols=67 Identities=7% Similarity=0.056 Sum_probs=35.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhh----CC-C-CchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHH
Q 044084 234 CVVAYSSMVAMYGKTGRIRDAMRLVAKMKP----KG-C-EPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDM 307 (343)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~ 307 (343)
|...+..|-.++...|++++++.--+.... .| + +.....|...+- +-..++-..|+.++
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVf---------------sra~Al~~~Gr~~e 118 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVF---------------SRAVALEGLGRKEE 118 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHH---------------HHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHH---------------HHHHHHHhcCChHH
Confidence 345667778888899999876654433321 11 1 112233322221 11234556788888
Q ss_pred HHHHHHHH
Q 044084 308 CVKFYNEF 315 (343)
Q Consensus 308 a~~~~~~m 315 (343)
|+.-|+..
T Consensus 119 A~~~fr~a 126 (144)
T PF12968_consen 119 ALKEFRMA 126 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877753
No 457
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=44.25 E-value=39 Score=20.98 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=31.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccccc
Q 044084 300 NMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQI 340 (343)
Q Consensus 300 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 340 (343)
...|+.+.+.+++++....|..|.......+..+..+-|+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGEL 52 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34678888999999999888888877777777777766653
No 458
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=44.20 E-value=37 Score=16.03 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 044084 112 KVAEELFKEAEE 123 (343)
Q Consensus 112 ~~a~~~~~~~~~ 123 (343)
+.+..+|+++..
T Consensus 4 ~~~r~i~e~~l~ 15 (33)
T smart00386 4 ERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 459
>PHA03100 ankyrin repeat protein; Provisional
Probab=43.90 E-value=2.3e+02 Score=25.14 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=9.7
Q ss_pred HHHHHHHHhCCCCCCh
Q 044084 7 LHYYEKMKSAGIVLDS 22 (343)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (343)
.++++.+.+.|..|+.
T Consensus 48 ~~ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 48 IDVVKILLDNGADINS 63 (480)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 3566666677765544
No 460
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.17 E-value=1.6e+02 Score=23.13 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=57.0
Q ss_pred HHHHHHHHH--hcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 044084 133 FLKLVLMYI--EEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAY 210 (343)
Q Consensus 133 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 210 (343)
+..+++++. ..+++++|.+.+-. ..+.|+ .-..++.++...|+.+.|..+++...... .+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH---PSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC---CCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-
Confidence 344455543 34566677666622 122222 23357777777888888888888754332 122223333333
Q ss_pred HccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHcc
Q 044084 211 CRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248 (343)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (343)
..++.+.+|..+-+...+.. ....+..++..+...
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEE 185 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHH
Confidence 55678888877666544421 134566666665543
No 461
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=43.14 E-value=2.1e+02 Score=24.28 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 044084 292 YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSK 336 (343)
Q Consensus 292 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 336 (343)
|..++......|.++..+.+|++.+..|..|=...-..+++.+..
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 777778888888888999999999999988877777777776653
No 462
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.86 E-value=2e+02 Score=24.13 Aligned_cols=135 Identities=18% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH----hcCCCCch
Q 044084 91 ILEDPSVYASLICSFASIAEVKVAEELFKEAEEK-GMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMK----NAELNISD 165 (343)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 165 (343)
++.|...++.+..+ ....+++..+..+...+. |-.--...+......||+.|+-+.|++.+.+.. ..|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44455555544432 222344444445554443 211124556667778999999998888877654 34556665
Q ss_pred hhHHHHHHHH-hcCCcHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 166 CISCVIVNGF-SKRRAYWAAVKVYEQLISQGCIPG----QVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 166 ~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
..+..-+..+ ....-..+-++..+.+.+.|..-+ ..+|-.+- +....++.+|-.+|-+....
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 5444333322 222233444555555555554322 22333332 23456888888888776653
No 463
>PHA02798 ankyrin-like protein; Provisional
Probab=42.84 E-value=2.5e+02 Score=25.19 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=6.6
Q ss_pred HHHHHHHHhcCCCC
Q 044084 80 LKFFRDMKEKGILE 93 (343)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (343)
.++.+.+.+.|..+
T Consensus 89 ~~iv~~Ll~~Gadi 102 (489)
T PHA02798 89 LDIVKILIENGADI 102 (489)
T ss_pred HHHHHHHHHCCCCC
Confidence 44444555555443
No 464
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.35 E-value=82 Score=27.70 Aligned_cols=105 Identities=11% Similarity=0.009 Sum_probs=66.2
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhcCCCCChHh-HHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044084 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDPSV-YASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144 (343)
Q Consensus 66 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (343)
-++.+...++++.|..++.+..+. .||-.. |..-..++.+.+++..|+.=...+++..+. -...|..-..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 355667788899999999988875 565444 333346788888988888877777775522 2333333344555556
Q ss_pred cHhHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 044084 145 MVEKTLEVVESMKNAELNISDCISCVIVNGF 175 (343)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (343)
.+.+|+..|+..... .|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 667777777666543 35554454444433
No 465
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.56 E-value=2.1e+02 Score=23.85 Aligned_cols=184 Identities=16% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCC
Q 044084 13 MKSAGIVLDSGCYCQIMEAFYKIG-DSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGI 91 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 91 (343)
+...|.+|....-..+=..+.+.| -..-|.++|......+- .+.++..+.+.+--+.-.++|
T Consensus 157 ~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~---------i~~lis~Lrkg~md~rLmeff-------- 219 (412)
T KOG2297|consen 157 LLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKD---------INDLISSLRKGKMDDRLMEFF-------- 219 (412)
T ss_pred HHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhcc---------HHHHHHHHHhcChHhHHHHhc--------
Q ss_pred CCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHH
Q 044084 92 LEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVI 171 (343)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (343)
+|+..+-......+...|--+...-.-.++... .-...-..|..-..+...+++......+-.+..--|+......+
T Consensus 220 Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~~---a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~iv 296 (412)
T KOG2297|consen 220 PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEG---ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIV 296 (412)
T ss_pred CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeee
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHH
Q 044084 172 VNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAE 220 (343)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 220 (343)
-++.....+|.+-.++..+-.-. ...+|..++.+++..|+.+-..
T Consensus 297 Ws~iMsaveWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 297 WSGIMSAVEWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhhHHHhhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHHH
No 466
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.49 E-value=21 Score=29.73 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=48.8
Q ss_pred hcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHccCChhHHH
Q 044084 142 EEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQ-VTYASIINAYCRIGLYSKAE 220 (343)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~ 220 (343)
..|.+++|++.|......++ +....|..-.+.+.+.+++..|++=++..... .||. .-|-.--.+-...|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 34556666666666665554 44444554555566666666666655555443 2332 11222222233446666666
Q ss_pred HHHHHHHHcCCCcChh
Q 044084 221 KVFIEMQQKGFDKCVV 236 (343)
Q Consensus 221 ~~~~~~~~~~~~~~~~ 236 (343)
..|....+.++.+...
T Consensus 203 ~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 203 HDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHhccccHHHH
Confidence 6666666665544433
No 467
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=41.09 E-value=1.7e+02 Score=22.59 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDM 86 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 86 (343)
..+.+++.|.-.|+++.|-+.|.-+.+.. ..+. ...|..=+..+.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDi--R~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDI--RSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCCh--HhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 34567777778888888888887776543 2221 234555455555544443333334333
No 468
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.90 E-value=2.3e+02 Score=24.22 Aligned_cols=231 Identities=10% Similarity=0.109 Sum_probs=104.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc----CCCCCh
Q 044084 20 LDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK----GILEDP 95 (343)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 95 (343)
|++.+.-.++.-|....+-+....+-... ....+.+-.++.+.+.+...+.+..+.... ....+
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f-----------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT- 140 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIF-----------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLT- 140 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHH-----------HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchh-
Confidence 56677777777777665543332221111 234555666666555555444433333322 11111
Q ss_pred HhHHHHHHHHhcccCHHHHHHHHHHHH----HcCCCCCHHH-HHHH---HHHHHhcCcHhHHHHHHHHHHhcCCCCchhh
Q 044084 96 SVYASLICSFASIAEVKVAEELFKEAE----EKGMLRDLEV-FLKL---VLMYIEEGMVEKTLEVVESMKNAELNISDCI 167 (343)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~-~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 167 (343)
.....++..|.+.+++..+...++.-. ......++.. ...+ .-.|...++++.|+.+|+...-. |....
T Consensus 141 ~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~v 217 (422)
T KOG2582|consen 141 SIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAV 217 (422)
T ss_pred hhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHH
Confidence 122334555556666555544433211 1111111111 1111 11244567788888887776532 22222
Q ss_pred HHH--------HHHHHhcCCcH--------HHHHHHHHHHH-------HcCCCCCHhhHHHHHHH----HHccCChhHHH
Q 044084 168 SCV--------IVNGFSKRRAY--------WAAVKVYEQLI-------SQGCIPGQVTYASIINA----YCRIGLYSKAE 220 (343)
Q Consensus 168 ~~~--------l~~~~~~~~~~--------~~a~~~~~~~~-------~~~~~p~~~~~~~ll~~----~~~~~~~~~a~ 220 (343)
-.. ++-...-.|+. ..|...++.|. +.-..-......+++.. +.+.++..-+.
T Consensus 218 s~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k 297 (422)
T KOG2582|consen 218 SHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAK 297 (422)
T ss_pred HHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHH
Confidence 122 22222334443 22333333222 11001111123444433 33456666666
Q ss_pred HHHHHHHHcCCCcChhhHHHHH----HHHHccCChHHHHHHHHHHhhCC
Q 044084 221 KVFIEMQQKGFDKCVVAYSSMV----AMYGKTGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~m~~~~ 265 (343)
.....+.++.+..=..+|.++= ....+.+..+++.+..-+|.+.|
T Consensus 298 ~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 298 QAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 7777666665444455555542 23335566677777777777654
No 469
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.86 E-value=2.1e+02 Score=23.72 Aligned_cols=82 Identities=17% Similarity=0.041 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHH
Q 044084 111 VKVAEELFKEAEEKGM----LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (343)
.+.+.+.|+.....+. ..++.....++....+.|+.+.-..+++..... .+......++.+++...+++...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4555666666665311 235555556666666666655544444444433 234455667777777777777777
Q ss_pred HHHHHHHcC
Q 044084 187 VYEQLISQG 195 (343)
Q Consensus 187 ~~~~~~~~~ 195 (343)
+++.+...+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 777777643
No 470
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=40.50 E-value=1e+02 Score=19.91 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCc
Q 044084 7 LHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGR 75 (343)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 75 (343)
..+++.|.+.|+ .+..-+..+ -++....++|..+++.+..+| ..+|....+++-..|.
T Consensus 17 ~~ild~L~~~gv-lt~~~~e~I---~~~~t~~~qa~~Lld~L~trG-------~~Af~~F~~aL~~~~~ 74 (86)
T cd08323 17 SYIMDHMISDGV-LTLDEEEKV---KSKATQKEKAVMLINMILTKD-------NHAYVSFYNALLHEGY 74 (86)
T ss_pred HHHHHHHHhcCC-CCHHHHHHH---HcCCChHHHHHHHHHHHHhcC-------HHHHHHHHHHHHhcCC
Confidence 346666666664 233323222 224455677777777777666 3456666666554443
No 471
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.31 E-value=1.7e+02 Score=22.44 Aligned_cols=120 Identities=11% Similarity=0.066 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc--CCCcChhhHHHHHH-HHHccCC--hHHHHH
Q 044084 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK--GFDKCVVAYSSMVA-MYGKTGR--IRDAMR 256 (343)
Q Consensus 182 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~~~--~~~a~~ 256 (343)
++++++-+++.. ++...-.....|++++|..-++.+.+. .++.-...|..+.. +++..+. +-+|.-
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 445555555443 344444456778999999888877653 11112334555555 5555543 556666
Q ss_pred HHHHHhhCCCCchHHH----HHHHHHHHh-cccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 257 LVAKMKPKGCEPNVWI----YNSLMDMHG-RAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRM 317 (343)
Q Consensus 257 ~~~~m~~~~~~p~~~~----~~~l~~~~~-~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 317 (343)
++.-+... ..|++.- +...+.+.+ -.|. ....+--..+.|+++.|.+.++-|..
T Consensus 91 l~~~l~~~-~~ps~~EL~V~~~~YilGl~D~vGE------LrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDG-RLPSPEELGVPPIAYILGLADAVGE------LRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcC-CCCCHHHcCCCHHHHHHHHHHHHHH------HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66655544 3333321 111111111 1111 22233445577888888888877744
No 472
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=39.39 E-value=2.1e+02 Score=28.28 Aligned_cols=117 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccC--cHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHH
Q 044084 36 GDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSG--RAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKV 113 (343)
Q Consensus 36 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (343)
++....-+.+........... .....++.+|.+.+ ++++|+..+.++++.+...-......++-..--..-++.
T Consensus 792 ~KVn~ICdair~~l~~~~~~~----~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLvDvn~Ly~~ 867 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKPKDKD----KYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLVDVNKLYDV 867 (928)
T ss_pred cHHHHHHHHHHHHhcccccch----hhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeeccHHHHHHH
Q ss_pred HHHHHH----HHHHcCCCCCHHHHHHHHHHHHh-------------cCcHhHHHHHHHHH
Q 044084 114 AEELFK----EAEEKGMLRDLEVFLKLVLMYIE-------------EGMVEKTLEVVESM 156 (343)
Q Consensus 114 a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~ 156 (343)
|+.+|+ .|....-..|+.=|--.++-+-+ .+++++|++-+.++
T Consensus 868 ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 868 ALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 473
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=38.66 E-value=1.1e+02 Score=19.84 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
|......+...+...|++++|++.+-.+.+.+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 55666666666777777777777666666554
No 474
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.32 E-value=2.2e+02 Score=23.21 Aligned_cols=190 Identities=15% Similarity=0.097 Sum_probs=111.1
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHh----cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 044084 72 KSGRAFEILKFFRDMKEKGILEDPSVYASLICSFA----SIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE----E 143 (343)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 143 (343)
..+++..+...+......+. ......+...+. ...+...|...+....+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 45667778888877766432 233333333333 33467889999987777663 3344446666655 4
Q ss_pred CcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC-------CcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----
Q 044084 144 GMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR-------RAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR---- 212 (343)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~---- 212 (343)
.+..+|..+|++..+.|..+...+...+...|... -+...|...|.+....+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 48899999999998888744222233344444332 13347888888888776 33333334444432
Q ss_pred cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccC---------------ChHHHHHHHHHHhhCCCCchHHHHH
Q 044084 213 IGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG---------------RIRDAMRLVAKMKPKGCEPNVWIYN 274 (343)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~m~~~~~~p~~~~~~ 274 (343)
..+.++|...|...-+.|. ......+- .+...| +...|...+......+.........
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3477888888888888873 22222222 344444 5556666666666655544444433
No 475
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.11 E-value=1.2e+02 Score=20.20 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=9.7
Q ss_pred HHHHHHHccCChHHHHHHHHH
Q 044084 240 SMVAMYGKTGRIRDAMRLVAK 260 (343)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~ 260 (343)
.|--.|++.|+.+.+.+-|+.
T Consensus 77 hLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHH
Confidence 334444445555554444443
No 476
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.99 E-value=2.1e+02 Score=22.87 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHh
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFS 176 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (343)
....-+..|.+.-++..|-...+++.+ -.....++++ |.+..+..--.++.+-....+++-+.....+++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Q ss_pred cCCcHHHHHHHHHHHHHc-CC-----------CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHH
Q 044084 177 KRRAYWAAVKVYEQLISQ-GC-----------IPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241 (343)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~-~~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (343)
..|+..+|+.-++.-... |. .|.+.....++..|.+ +++++|.+++.++-+.|+.|....-+.+
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 477
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.85 E-value=2.6e+02 Score=23.93 Aligned_cols=140 Identities=9% Similarity=0.015 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC-C--CHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGML-R--DLEVFLKL 136 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~--~~~~~~~l 136 (343)
..+.-.++.-+....+-+...-+-... ..+.+.+-.++.+.++......+..+....-.. + =......+
T Consensus 75 ~~~li~~~~~FV~~~n~eqlr~as~~f--------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l 146 (422)
T KOG2582|consen 75 PETLIELLNDFVDENNGEQLRLASEIF--------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADL 146 (422)
T ss_pred HHHHHHHHHHHHHhcChHHHhhHHHHH--------HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHH
Confidence 456666777777666533322211111 123445555666666655544444443332111 1 12233445
Q ss_pred HHHHHhcCcHhHHHHHHHHH-H----hc-CCCCchhhHHHHH--HHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 044084 137 VLMYIEEGMVEKTLEVVESM-K----NA-ELNISDCISCVIV--NGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIIN 208 (343)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~-~----~~-~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 208 (343)
+..+.+.+++.-+...++.- . .. ..+|.....-.+- -.|...++++.|.-+|...... |....-...+.
T Consensus 147 ~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlE 223 (422)
T KOG2582|consen 147 LQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHIHLE 223 (422)
T ss_pred HHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHHHHH
Confidence 66667777766655554431 1 11 1222211100010 1234578999999999988753 54443334444
Q ss_pred HH
Q 044084 209 AY 210 (343)
Q Consensus 209 ~~ 210 (343)
+|
T Consensus 224 aY 225 (422)
T KOG2582|consen 224 AY 225 (422)
T ss_pred HH
Confidence 44
No 478
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=37.79 E-value=3.7e+02 Score=25.63 Aligned_cols=90 Identities=7% Similarity=-0.097 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc-------------ChhhHHHHHHHH
Q 044084 180 AYWAAVKVYEQLISQ-GCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK-------------CVVAYSSMVAMY 245 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~l~~~~ 245 (343)
..++..+.+....+. |+..+......+++.. .|+...+..+++.+...|-.. +......++.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Q ss_pred HccCChHHHHHHHHHHhhCCCCchHHH
Q 044084 246 GKTGRIRDAMRLVAKMKPKGCEPNVWI 272 (343)
Q Consensus 246 ~~~~~~~~a~~~~~~m~~~~~~p~~~~ 272 (343)
.. ++...++.+++++...|+.+....
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCHHHHH
No 479
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=37.61 E-value=2.3e+02 Score=23.32 Aligned_cols=116 Identities=9% Similarity=0.024 Sum_probs=53.5
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhc
Q 044084 65 ILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGML-RDLEVFLKLVLMYIEE 143 (343)
Q Consensus 65 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 143 (343)
.++....+.++.....+.+..+.. ...-...+..+...|++..|.+++.+..+.--. ........|-.-....
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~ 176 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQET 176 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHH
Confidence 344555555555555555555532 222334555566777777777776665542100 0111122211111000
Q ss_pred -CcH-hHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHH
Q 044084 144 -GMV-EKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189 (343)
Q Consensus 144 -~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (343)
... +.....|..+.. .-|...|..++.+|...|+...+.+-+.
T Consensus 177 ~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 177 LELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 000 111122222322 2455578888888877776665554333
No 480
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=37.18 E-value=3.4e+02 Score=25.04 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 110 EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
+.+...++++++.. . + ...+..++++....|......-+.+.+....
T Consensus 324 ~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 324 SEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred CHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 34444455554433 1 1 3455555555555555444444444444333
No 481
>PHA02798 ankyrin-like protein; Provisional
Probab=37.11 E-value=3.1e+02 Score=24.61 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=6.0
Q ss_pred HHHHHHHHcCCCC
Q 044084 116 ELFKEAEEKGMLR 128 (343)
Q Consensus 116 ~~~~~~~~~~~~~ 128 (343)
++.+.+.+.|..+
T Consensus 126 ~iv~~Ll~~Gadv 138 (489)
T PHA02798 126 EILLFMIENGADT 138 (489)
T ss_pred HHHHHHHHcCCCc
Confidence 3444444555443
No 482
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.00 E-value=2.2e+02 Score=22.81 Aligned_cols=80 Identities=10% Similarity=0.069 Sum_probs=35.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChH-hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHhHHH
Q 044084 73 SGRAFEILKFFRDMKEKGILEDPS-VYASLICSFASIAEVKVAEELFKEAEEKGMLRD-LEVFLKLVLMYIEEGMVEKTL 150 (343)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 150 (343)
..+++.|+..|.+... +.|+.. -|..-+-.+.+..+++.+..--.+..+. .|+ +.....+.........+++|+
T Consensus 23 ~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHH
Confidence 3445555554444333 234442 2333344444555555554444444332 222 222233344444555555555
Q ss_pred HHHHHH
Q 044084 151 EVVESM 156 (343)
Q Consensus 151 ~~~~~~ 156 (343)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 555554
No 483
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=36.94 E-value=1.9e+02 Score=22.14 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=10.3
Q ss_pred ccCChhHHHHHHHHHHH
Q 044084 212 RIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 212 ~~~~~~~a~~~~~~~~~ 228 (343)
+.|+++.|++.++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44666666666666554
No 484
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.74 E-value=34 Score=28.57 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=20.3
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHH
Q 044084 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123 (343)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (343)
.|.++.|++.|...+..+ ++....|..-.+.+.+.+++..+++=++...+
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e 176 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE 176 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc
Confidence 344444444444444332 12222333333444444444444444444433
No 485
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=36.64 E-value=4.8e+02 Score=26.68 Aligned_cols=130 Identities=9% Similarity=0.064 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHH-------HhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc-----C
Q 044084 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESM-------KNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ-----G 195 (343)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 195 (343)
.....|..|...+-+.++.++|+..=.+. ...+.+-+...|..+.-.+...++...|...+.+.... |
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 35667788888888899998888765443 22222223334555555555555666777666665442 1
Q ss_pred --CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc-----CC--CcChhhHHHHHHHHHccCChHHHHHH
Q 044084 196 --CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK-----GF--DKCVVAYSSMVAMYGKTGRIRDAMRL 257 (343)
Q Consensus 196 --~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (343)
-+|...+++.+-..+...++.+.|.+.++..... |. -.+..++..+.+.+...+++..|...
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 1233334444433444557888888888777653 11 12345666666666666666655543
No 486
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=36.44 E-value=1.5e+02 Score=20.80 Aligned_cols=41 Identities=7% Similarity=0.238 Sum_probs=21.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 044084 117 LFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
.++.+.+.++.-....+.-+=..|.+-.+..+|..+|+.++
T Consensus 85 fl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 85 FLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 34445555544334444444445555566666666666543
No 487
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=35.49 E-value=1.3e+02 Score=19.76 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhCC
Q 044084 38 SEKVAALFLECESRK 52 (343)
Q Consensus 38 ~~~a~~~~~~~~~~~ 52 (343)
.++|.++++.+..+|
T Consensus 53 ~~qAr~Lld~l~~KG 67 (94)
T cd08329 53 PLQARELIDTVLVKG 67 (94)
T ss_pred HHHHHHHHHHHHhhh
Confidence 355555555555444
No 488
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=35.36 E-value=1.1e+02 Score=23.81 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCC-------CChHhHHHHHHHHhccc---------CHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 044084 76 AFEILKFFRDMKEKGIL-------EDPSVYASLICSFASIA---------EVKVAEELFKEAEEKGMLR-DLEVFLKLVL 138 (343)
Q Consensus 76 ~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 138 (343)
.+.|+.++..|--..++ -...-|..+..+|.+.| +.+....+++...+.|++. =++.|.++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 56677777666433221 13344666666666665 2334444444444444331 1344444444
Q ss_pred HHHhcCcHhHHHHHHHH
Q 044084 139 MYIEEGMVEKTLEVVES 155 (343)
Q Consensus 139 ~~~~~~~~~~a~~~~~~ 155 (343)
--.-.-++++..+++..
T Consensus 217 k~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAI 233 (236)
T ss_pred cccCCCCHHHHHHHHHH
Confidence 33333344444444443
No 489
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.05 E-value=2.4e+02 Score=22.64 Aligned_cols=116 Identities=11% Similarity=-0.026 Sum_probs=69.8
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhH-HHHHHHHhcCCcHH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDL-EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCIS-CVIVNGFSKRRAYW 182 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~ 182 (343)
|.....++.|...|.+.+.. .|+. ..|+.-+..+.+..+++.+.+-=.+..+.. |+..-- -.+-.+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhcccc
Confidence 33445677777777666654 3555 566777778888888888776555555433 444332 23445566677888
Q ss_pred HHHHHHHHHHHc----CCCCCHhhHHHHHHHHHccCChhHHHHHHH
Q 044084 183 AAVKVYEQLISQ----GCIPGQVTYASIINAYCRIGLYSKAEKVFI 224 (343)
Q Consensus 183 ~a~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 224 (343)
.|+..+.+..+. .++|-......|..+--..-...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 888888887432 344444555666555443334444444443
No 490
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.40 E-value=3.7e+02 Score=24.72 Aligned_cols=137 Identities=21% Similarity=0.210 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHH-------HHHhCCCCCC----------CchHHHHHHH---HHHhhccCcHHHHHH
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFL-------ECESRKLDLT----------PSSTHMYKIL---CDSLGKSGRAFEILK 81 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~----------~~~~~~~~~l---i~~~~~~~~~~~a~~ 81 (343)
+.+.-.+..++...|+.+-+..+++ ........|. |.+...|-+| |..+.+.|.+..|++
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 3444455667888888776655544 4433333332 3334444444 456678899999999
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHh-cccCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCc---HhHHHHHHH
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFA-SIAEVKVAEELFKEAEEK---GMLRDLEVFLKLVLMYIEEGM---VEKTLEVVE 154 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 154 (343)
+..-+.+....-|+.....+|..|+ +..++.-.+++++..... ..-|+-..-.+|...|..... ...|...+.
T Consensus 364 ~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~ 443 (665)
T KOG2422|consen 364 WCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALL 443 (665)
T ss_pred HHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHH
Confidence 9888888765556777777777764 666777777777766442 234565555566666666555 345555555
Q ss_pred HHHh
Q 044084 155 SMKN 158 (343)
Q Consensus 155 ~~~~ 158 (343)
+...
T Consensus 444 qAl~ 447 (665)
T KOG2422|consen 444 QALK 447 (665)
T ss_pred HHHH
Confidence 5443
No 491
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=34.00 E-value=1.2e+02 Score=18.84 Aligned_cols=33 Identities=6% Similarity=0.059 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIG 36 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 36 (343)
.+-|..++..+.... +.++..||++...+.+++
T Consensus 13 tEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 13 TEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHhcchh-hcChHHHHHHHHHHHHcc
Confidence 344555665555443 346677777777665543
No 492
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=33.40 E-value=1.5e+02 Score=26.27 Aligned_cols=103 Identities=9% Similarity=0.003 Sum_probs=50.7
Q ss_pred HHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHccCCh
Q 044084 138 LMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQ-VTYASIINAYCRIGLY 216 (343)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 216 (343)
..+.+.+.++.|..++.+..+.+. .....|..-..++.+.+++..|+.=+..+.+.. |+. ..|..=..++.+.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldp-nca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDP-NCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCC-cceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 344555666667776666665542 223333333456666666666665555555442 321 1222222333444455
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 044084 217 SKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245 (343)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (343)
.+|...|+..... .|+-.-...++.-|
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 5555555554443 45554444444433
No 493
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=33.24 E-value=1.2e+02 Score=18.75 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhcc
Q 044084 37 DSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKS 73 (343)
Q Consensus 37 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 73 (343)
..+++.++++.+..+| ..+|..++.++...
T Consensus 42 ~~~k~~~Lld~l~~kg-------~~af~~F~~~L~~~ 71 (80)
T cd01671 42 RQDKARKLLDILPRKG-------PKAFQSFLQALQET 71 (80)
T ss_pred hHHHHHHHHHHHHhcC-------hHHHHHHHHHHHhc
Confidence 4555555555555554 23444445444433
No 494
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=33.22 E-value=1.3e+02 Score=19.21 Aligned_cols=33 Identities=18% Similarity=0.480 Sum_probs=17.8
Q ss_pred CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCC
Q 044084 214 GLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250 (343)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (343)
.+.+++.++++.+...| ..+|..+..++...|.
T Consensus 44 tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRG----KQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCc
Confidence 44555555665555555 4455555555554443
No 495
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=33.21 E-value=2.3e+02 Score=21.87 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
.+.++..+...|+++.|.+.|.-+.+.
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 455666677777777777777777665
No 496
>PHA02940 hypothetical protein; Provisional
Probab=33.11 E-value=2.5e+02 Score=22.36 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=17.4
Q ss_pred cHhHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 044084 145 MVEKTLEVVESMKNAELNISDCISCVIVNGF 175 (343)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (343)
+++.++.-++.+.+..-.....+|+.|..+.
T Consensus 184 dle~d~keie~~lE~~~dl~rGtY~vL~~al 214 (315)
T PHA02940 184 DLESDFKEIEEELEEKDDLSRGTYKVLKRAL 214 (315)
T ss_pred chhhhHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 3555555555555555445555666665554
No 497
>PHA03100 ankyrin repeat protein; Provisional
Probab=33.10 E-value=3.5e+02 Score=24.03 Aligned_cols=39 Identities=8% Similarity=-0.144 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHH
Q 044084 8 HYYEKMKSAGIVLDS--GCYCQIMEAFYKIGDSEKVAALFL 46 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~ 46 (343)
.+++.+.+.+-..+. ..-...+...++.|+.+-+..+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~ 56 (480)
T PHA03100 16 KNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLD 56 (480)
T ss_pred HHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHH
Confidence 445555554422222 233445666677777665555543
No 498
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=32.93 E-value=1.6e+02 Score=20.17 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 044084 6 KLHYYEKMKSAGIVLDSGCYCQIMEAFYK 34 (343)
Q Consensus 6 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 34 (343)
+..+++.+.+.|..-|.......+....+
T Consensus 11 I~~vi~~l~~~gyidD~~ya~~~v~~~~~ 39 (121)
T PF02631_consen 11 IEEVIDRLKELGYIDDERYAESYVRSRLR 39 (121)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcc
Confidence 34455555555544333333444444433
No 499
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.85 E-value=4e+02 Score=24.57 Aligned_cols=76 Identities=12% Similarity=0.022 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHH-HHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 117 LFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKT-LEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
+++...+.|...+ ..+.++......+.-++- .+++....+.++.-...-|-.++.++...++.+.|.+++.++.+.
T Consensus 161 iie~~l~~~~d~d--i~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~e 237 (926)
T COG5116 161 IIEKYLSDGNDCD--IINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKE 237 (926)
T ss_pred HHHHHHhCCCccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhh
Confidence 4444555554333 334444444433322222 223333333332111122445566666677777777777777654
No 500
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=32.85 E-value=1.9e+02 Score=20.78 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=31.9
Q ss_pred HHHHHHhcccC---HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 100 SLICSFASIAE---VKVAEELFKEAEEK-GMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 100 ~l~~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
.+..++.++.+ ..+...+++.+.+. ...........|.-++.+.++++++++..+.+.+..
T Consensus 37 ~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 37 NLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred HHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 34444444433 44555666666652 222223334445556666677777777666666544
Done!