Query 044084
Match_columns 343
No_of_seqs 561 out of 1481
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 19:39:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.7E-36 1.3E-40 259.7 25.1 209 39-249 7-224 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.7E-35 9.1E-40 254.4 25.1 208 4-214 7-224 (501)
3 2xpi_A Anaphase-promoting comp 100.0 8.6E-33 3E-37 247.3 32.3 231 107-343 284-535 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.2E-31 4E-36 240.0 34.2 245 93-343 303-569 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-27 5.5E-32 202.0 38.3 330 2-343 14-358 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 7.8E-27 2.7E-31 197.7 38.0 326 2-339 48-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3.3E-24 1.1E-28 185.1 33.5 316 5-333 10-372 (450)
8 2gw1_A Mitochondrial precursor 99.9 1E-23 3.6E-28 185.0 31.0 330 2-343 21-468 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.2E-22 4.1E-27 175.3 36.5 329 2-342 41-443 (450)
10 3ieg_A DNAJ homolog subfamily 99.9 9.1E-21 3.1E-25 158.4 35.6 307 2-339 18-355 (359)
11 3fp2_A TPR repeat-containing p 99.9 1.7E-21 5.8E-26 171.9 32.0 330 2-343 40-481 (537)
12 2gw1_A Mitochondrial precursor 99.9 3.9E-21 1.3E-25 168.6 29.6 312 22-343 6-434 (514)
13 3hym_B Cell division cycle pro 99.9 6E-20 2E-24 151.7 32.1 295 18-341 18-322 (330)
14 3hym_B Cell division cycle pro 99.9 1.1E-19 3.9E-24 150.0 32.2 275 2-286 37-321 (330)
15 3ieg_A DNAJ homolog subfamily 99.9 2.2E-19 7.5E-24 149.9 33.4 261 22-291 3-293 (359)
16 1fch_A Peroxisomal targeting s 99.9 2.6E-20 9E-25 156.3 25.1 280 3-290 41-350 (368)
17 4eqf_A PEX5-related protein; a 99.9 3.1E-20 1.1E-24 155.8 23.6 237 21-264 64-310 (365)
18 1fch_A Peroxisomal targeting s 99.9 5.3E-20 1.8E-24 154.5 25.0 288 32-343 35-349 (368)
19 3fp2_A TPR repeat-containing p 99.9 3.6E-18 1.2E-22 150.6 34.2 312 2-321 74-494 (537)
20 3cv0_A Peroxisome targeting si 99.9 3.5E-19 1.2E-23 146.8 25.7 235 21-264 20-269 (327)
21 3cv0_A Peroxisome targeting si 99.8 1.2E-18 4E-23 143.7 25.7 253 2-263 36-314 (327)
22 4eqf_A PEX5-related protein; a 99.8 6E-19 2.1E-23 148.0 24.1 252 2-260 80-352 (365)
23 3mkr_A Coatomer subunit epsilo 99.8 3.5E-18 1.2E-22 138.2 26.0 246 2-264 14-264 (291)
24 3spa_A Mtrpol, DNA-directed RN 99.8 8E-21 2.7E-25 169.9 9.7 151 130-285 127-287 (1134)
25 3mkr_A Coatomer subunit epsilo 99.8 2.5E-18 8.4E-23 139.1 23.3 253 29-318 6-264 (291)
26 3spa_A Mtrpol, DNA-directed RN 99.8 9.8E-21 3.4E-25 169.3 9.8 150 95-249 127-286 (1134)
27 2xm6_A Protein corresponding t 99.8 7.8E-16 2.7E-20 134.2 40.0 311 2-342 58-421 (490)
28 1b89_A Protein (clathrin heavy 99.8 4.8E-19 1.6E-23 147.0 15.7 266 2-312 18-305 (449)
29 2xm6_A Protein corresponding t 99.8 1.4E-14 4.8E-19 126.3 39.1 293 2-321 94-435 (490)
30 3uq3_A Heat shock protein STI1 99.8 2E-16 6.8E-21 125.7 24.6 226 22-264 5-236 (258)
31 4g1t_A Interferon-induced prot 99.8 1.6E-15 5.6E-20 131.5 31.9 319 20-343 49-449 (472)
32 2pl2_A Hypothetical conserved 99.8 1.1E-16 3.8E-21 123.9 21.8 209 20-261 3-211 (217)
33 2pl2_A Hypothetical conserved 99.8 1.4E-16 4.8E-21 123.3 22.0 182 2-192 20-212 (217)
34 1b89_A Protein (clathrin heavy 99.8 2.4E-18 8.1E-23 142.9 12.5 187 34-259 15-201 (449)
35 1xnf_A Lipoprotein NLPI; TPR, 99.8 6E-17 2E-21 130.1 18.9 226 33-264 16-244 (275)
36 3uq3_A Heat shock protein STI1 99.8 7.2E-16 2.5E-20 122.4 24.4 226 60-318 5-236 (258)
37 4g1t_A Interferon-induced prot 99.7 7.1E-15 2.4E-19 127.5 30.0 320 2-326 66-468 (472)
38 3u4t_A TPR repeat-containing p 99.7 2.2E-15 7.5E-20 120.8 24.7 236 22-264 3-250 (272)
39 2ho1_A Type 4 fimbrial biogene 99.7 2.4E-15 8.2E-20 119.2 24.1 201 60-264 37-238 (252)
40 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.5E-15 1.9E-19 118.6 26.1 248 70-343 15-265 (275)
41 2vq2_A PILW, putative fimbrial 99.7 5.5E-15 1.9E-19 114.8 24.9 201 60-263 8-210 (225)
42 1ouv_A Conserved hypothetical 99.7 3.1E-14 1E-18 114.3 29.5 224 21-265 5-252 (273)
43 2ooe_A Cleavage stimulation fa 99.7 5E-14 1.7E-18 124.0 32.8 330 2-341 27-480 (530)
44 2h6f_A Protein farnesyltransfe 99.7 6.7E-15 2.3E-19 123.1 25.2 247 22-280 97-363 (382)
45 2q7f_A YRRB protein; TPR, prot 99.7 1.5E-15 5E-20 119.6 20.0 198 62-264 25-222 (243)
46 2ooe_A Cleavage stimulation fa 99.7 1E-13 3.5E-18 122.1 33.6 322 10-343 2-444 (530)
47 2vq2_A PILW, putative fimbrial 99.7 1.6E-14 5.6E-19 112.1 25.0 211 20-238 6-218 (225)
48 2ho1_A Type 4 fimbrial biogene 99.7 1E-14 3.5E-19 115.5 24.1 202 22-230 37-239 (252)
49 2q7f_A YRRB protein; TPR, prot 99.7 2.8E-15 9.4E-20 118.0 20.6 213 20-241 21-233 (243)
50 3u4t_A TPR repeat-containing p 99.7 2E-14 6.8E-19 115.2 25.7 256 62-335 5-266 (272)
51 2h6f_A Protein farnesyltransfe 99.7 2E-14 6.9E-19 120.2 25.7 259 57-335 94-364 (382)
52 1xi4_A Clathrin heavy chain; a 99.7 1.8E-13 6E-18 127.1 32.3 260 30-337 1057-1327(1630)
53 1ouv_A Conserved hypothetical 99.7 2.8E-13 9.5E-18 108.6 29.0 228 59-319 5-252 (273)
54 3sf4_A G-protein-signaling mod 99.7 8.6E-15 2.9E-19 124.2 20.7 307 19-340 6-363 (406)
55 4a1s_A PINS, partner of inscut 99.7 2.6E-15 9E-20 127.8 17.3 242 23-264 49-332 (411)
56 3sf4_A G-protein-signaling mod 99.7 2.5E-14 8.4E-19 121.4 21.6 269 60-343 9-326 (406)
57 4a1s_A PINS, partner of inscut 99.6 1.4E-14 4.9E-19 123.3 19.7 258 60-318 48-372 (411)
58 3ro2_A PINS homolog, G-protein 99.6 1.9E-14 6.6E-19 118.6 18.5 282 23-318 6-332 (338)
59 2ond_A Cleavage stimulation fa 99.6 4.8E-13 1.6E-17 109.2 26.2 218 39-264 33-270 (308)
60 3vtx_A MAMA; tetratricopeptide 99.6 2.5E-13 8.5E-18 102.1 22.5 166 95-264 5-170 (184)
61 3vtx_A MAMA; tetratricopeptide 99.6 1.8E-13 6.3E-18 102.8 21.4 167 21-194 4-170 (184)
62 3ulq_A Response regulator aspa 99.6 3.1E-13 1.1E-17 114.0 24.2 286 32-317 22-367 (383)
63 2ond_A Cleavage stimulation fa 99.6 1E-12 3.5E-17 107.3 25.5 218 4-230 33-271 (308)
64 4abn_A Tetratricopeptide repea 99.6 1E-13 3.6E-18 119.9 20.2 217 36-262 82-319 (474)
65 3ro2_A PINS homolog, G-protein 99.6 4.4E-14 1.5E-18 116.4 17.0 263 1-264 19-332 (338)
66 4abn_A Tetratricopeptide repea 99.6 1.5E-13 5E-18 119.0 20.8 211 74-291 82-313 (474)
67 1xi4_A Clathrin heavy chain; a 99.6 6E-12 2.1E-16 117.1 31.3 249 22-309 1105-1375(1630)
68 3nf1_A KLC 1, kinesin light ch 99.6 1.4E-13 4.8E-18 112.3 17.7 242 21-263 26-306 (311)
69 3e4b_A ALGK; tetratricopeptide 99.6 4.1E-12 1.4E-16 109.3 26.6 293 2-320 18-389 (452)
70 3e4b_A ALGK; tetratricopeptide 99.6 1.8E-12 6.2E-17 111.5 24.3 272 27-320 8-353 (452)
71 3nf1_A KLC 1, kinesin light ch 99.5 6.2E-13 2.1E-17 108.5 19.3 173 56-228 23-223 (311)
72 3ulq_A Response regulator aspa 99.5 3.4E-12 1.2E-16 107.5 21.5 233 28-263 109-367 (383)
73 4gyw_A UDP-N-acetylglucosamine 99.5 2.5E-12 8.6E-17 115.9 21.4 168 57-228 6-173 (723)
74 3q15_A PSP28, response regulat 99.5 1.1E-11 3.7E-16 104.3 23.4 298 19-317 7-364 (378)
75 1hz4_A MALT regulatory protein 99.5 2.3E-11 8E-16 102.0 24.3 296 24-319 16-350 (373)
76 3as5_A MAMA; tetratricopeptide 99.5 8.8E-12 3E-16 93.3 19.5 160 25-191 11-170 (186)
77 3as5_A MAMA; tetratricopeptide 99.5 5.4E-12 1.9E-16 94.5 18.2 166 60-229 8-173 (186)
78 1hz4_A MALT regulatory protein 99.5 1.4E-10 4.9E-15 97.2 28.7 256 62-317 16-321 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.5 3.4E-12 1.2E-16 115.1 19.0 166 21-193 8-173 (723)
80 4i17_A Hypothetical protein; T 99.5 7.7E-11 2.6E-15 91.6 24.4 196 94-319 6-210 (228)
81 3q15_A PSP28, response regulat 99.5 1.2E-11 4.1E-16 104.0 20.9 233 27-263 106-364 (378)
82 4i17_A Hypothetical protein; T 99.4 3.1E-11 1.1E-15 93.8 20.8 150 21-176 6-164 (228)
83 3edt_B KLC 2, kinesin light ch 99.4 1.4E-12 4.8E-17 104.7 13.2 227 2-229 16-281 (283)
84 3edt_B KLC 2, kinesin light ch 99.4 5.5E-12 1.9E-16 101.2 15.0 230 33-263 12-280 (283)
85 1qqe_A Vesicular transport pro 99.3 1.4E-10 4.7E-15 93.8 17.1 239 4-270 2-273 (292)
86 3qky_A Outer membrane assembly 99.3 4.2E-10 1.4E-14 89.4 18.5 105 21-126 14-128 (261)
87 1qqe_A Vesicular transport pro 99.3 4.5E-10 1.6E-14 90.8 18.9 200 75-291 32-261 (292)
88 3qky_A Outer membrane assembly 99.3 6.9E-10 2.4E-14 88.1 19.6 188 57-264 12-224 (261)
89 3mv2_B Coatomer subunit epsilo 99.3 9.1E-10 3.1E-14 87.8 19.8 144 79-227 85-238 (310)
90 2fo7_A Synthetic consensus TPR 99.3 6.8E-10 2.3E-14 78.1 17.5 124 65-191 6-129 (136)
91 2fo7_A Synthetic consensus TPR 99.3 8.6E-10 3E-14 77.6 18.0 128 98-228 4-131 (136)
92 3dra_A Protein farnesyltransfe 99.3 2.8E-08 9.4E-13 80.0 27.3 223 34-264 45-287 (306)
93 3urz_A Uncharacterized protein 99.2 9.7E-10 3.3E-14 84.1 18.0 178 25-229 7-186 (208)
94 3urz_A Uncharacterized protein 99.2 7.3E-10 2.5E-14 84.8 17.3 139 133-277 57-197 (208)
95 3rjv_A Putative SEL1 repeat pr 99.2 5.6E-09 1.9E-13 80.0 21.8 177 4-195 3-198 (212)
96 3mv2_B Coatomer subunit epsilo 99.2 3.6E-09 1.2E-13 84.4 21.1 210 29-263 20-239 (310)
97 2pzi_A Probable serine/threoni 99.2 4.4E-10 1.5E-14 101.6 17.8 186 71-262 402-603 (681)
98 4ga2_A E3 SUMO-protein ligase 99.2 3.1E-10 1.1E-14 81.9 12.1 141 31-178 6-147 (150)
99 4e6h_A MRNA 3'-END-processing 99.2 1.7E-07 5.9E-12 83.8 31.8 150 4-158 49-222 (679)
100 4e6h_A MRNA 3'-END-processing 99.2 1.6E-07 5.3E-12 84.1 31.4 84 3-88 119-222 (679)
101 2pzi_A Probable serine/threoni 99.2 8.4E-10 2.9E-14 99.8 17.2 177 33-215 402-583 (681)
102 2yhc_A BAMD, UPF0169 lipoprote 99.2 7.8E-09 2.7E-13 80.1 19.7 188 21-230 3-214 (225)
103 3qou_A Protein YBBN; thioredox 99.2 1.1E-09 3.8E-14 88.2 15.2 165 60-228 117-283 (287)
104 2r5s_A Uncharacterized protein 99.2 4.9E-10 1.7E-14 83.3 12.1 162 24-192 8-171 (176)
105 3rjv_A Putative SEL1 repeat pr 99.2 9.1E-09 3.1E-13 78.8 19.6 175 79-265 5-198 (212)
106 3qou_A Protein YBBN; thioredox 99.2 1.9E-09 6.5E-14 86.8 16.3 162 96-261 118-281 (287)
107 4ga2_A E3 SUMO-protein ligase 99.1 4.7E-10 1.6E-14 80.9 11.2 57 136-193 37-93 (150)
108 3dra_A Protein farnesyltransfe 99.1 4E-08 1.4E-12 79.0 23.0 231 3-242 49-300 (306)
109 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.1E-08 7.3E-13 77.6 20.8 186 60-264 4-213 (225)
110 2vsy_A XCC0866; transferase, g 99.1 3.3E-09 1.1E-13 94.1 17.8 153 2-161 4-159 (568)
111 2vsy_A XCC0866; transferase, g 99.1 3.5E-09 1.2E-13 93.9 17.7 154 35-195 2-158 (568)
112 2r5s_A Uncharacterized protein 99.1 1.1E-09 3.7E-14 81.4 11.6 156 102-261 13-170 (176)
113 2ifu_A Gamma-SNAP; membrane fu 99.1 1.8E-08 6E-13 82.0 18.9 200 34-262 3-222 (307)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 2E-08 6.8E-13 81.7 18.2 190 2-192 6-222 (307)
115 2uy1_A Cleavage stimulation fa 99.0 1.9E-06 6.5E-11 74.6 30.1 299 2-317 29-412 (493)
116 4gco_A Protein STI-1; structur 99.0 1.9E-08 6.4E-13 70.0 14.3 103 57-161 10-112 (126)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.0 8.6E-08 3E-12 73.3 18.6 127 63-194 9-150 (213)
118 3u3w_A Transcriptional activat 99.0 2.2E-07 7.4E-12 75.0 21.5 91 67-157 82-182 (293)
119 3u3w_A Transcriptional activat 99.0 9.1E-08 3.1E-12 77.2 19.2 165 28-193 81-265 (293)
120 3q7a_A Farnesyltransferase alp 99.0 7.6E-07 2.6E-11 72.5 24.2 226 31-264 63-331 (349)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1E-07 3.5E-12 72.9 18.2 126 98-229 9-150 (213)
122 3gyz_A Chaperone protein IPGC; 99.0 2.7E-08 9.4E-13 71.4 13.5 102 57-160 33-134 (151)
123 2c2l_A CHIP, carboxy terminus 98.9 2.4E-08 8.2E-13 80.1 13.2 195 60-264 4-199 (281)
124 1a17_A Serine/threonine protei 98.9 1.3E-07 4.3E-12 69.0 16.2 127 62-191 15-143 (166)
125 1a17_A Serine/threonine protei 98.9 1.1E-07 3.6E-12 69.5 15.5 126 133-261 16-143 (166)
126 3q7a_A Farnesyltransferase alp 98.9 9.2E-07 3.2E-11 72.0 21.7 219 3-229 70-331 (349)
127 2lni_A Stress-induced-phosphop 98.9 1.4E-07 4.7E-12 66.0 15.0 100 59-160 15-114 (133)
128 4gco_A Protein STI-1; structur 98.9 1.2E-07 4.2E-12 65.8 14.4 94 133-228 16-109 (126)
129 2qfc_A PLCR protein; TPR, HTH, 98.9 2.3E-06 8E-11 68.9 24.0 159 131-289 76-255 (293)
130 1na0_A Designed protein CTPR3; 98.9 1.6E-07 5.6E-12 64.6 15.1 95 132-228 11-105 (125)
131 2qfc_A PLCR protein; TPR, HTH, 98.9 2.2E-07 7.4E-12 75.0 17.4 166 97-262 77-264 (293)
132 2lni_A Stress-induced-phosphop 98.9 1.6E-07 5.5E-12 65.6 14.7 116 129-247 15-130 (133)
133 3gw4_A Uncharacterized protein 98.8 6.2E-08 2.1E-12 73.4 12.9 133 130-262 26-174 (203)
134 2e2e_A Formate-dependent nitri 98.8 5.8E-08 2E-12 71.9 12.3 120 72-194 22-144 (177)
135 2vyi_A SGTA protein; chaperone 98.8 1.7E-07 5.8E-12 65.2 14.1 96 132-229 14-109 (131)
136 3gw4_A Uncharacterized protein 98.8 2.3E-07 7.9E-12 70.2 15.9 164 141-305 3-183 (203)
137 1na0_A Designed protein CTPR3; 98.8 2.6E-07 9E-12 63.6 14.8 98 61-160 10-107 (125)
138 2e2e_A Formate-dependent nitri 98.8 5.2E-08 1.8E-12 72.2 11.7 121 106-229 21-144 (177)
139 3gyz_A Chaperone protein IPGC; 98.8 2.7E-07 9.2E-12 66.2 14.9 97 96-194 37-133 (151)
140 1p5q_A FKBP52, FK506-binding p 98.8 1.6E-07 5.3E-12 77.4 15.5 123 60-184 147-283 (336)
141 3dss_A Geranylgeranyl transfer 98.8 1.4E-05 4.9E-10 64.7 26.1 132 4-142 47-191 (331)
142 2vyi_A SGTA protein; chaperone 98.8 3.1E-07 1E-11 63.8 14.6 99 60-160 12-110 (131)
143 2c2l_A CHIP, carboxy terminus 98.8 3.3E-08 1.1E-12 79.3 9.7 195 21-229 3-199 (281)
144 2vgx_A Chaperone SYCD; alterna 98.8 1.7E-07 5.8E-12 67.2 12.1 101 57-159 18-118 (148)
145 2xcb_A PCRH, regulatory protei 98.8 2.8E-07 9.6E-12 65.5 13.2 103 56-160 14-116 (142)
146 1p5q_A FKBP52, FK506-binding p 98.8 3.6E-07 1.2E-11 75.3 15.5 132 129-262 146-292 (336)
147 3upv_A Heat shock protein STI1 98.7 5.4E-07 1.9E-11 62.4 14.1 97 61-159 5-101 (126)
148 2vgx_A Chaperone SYCD; alterna 98.7 1.2E-07 4.2E-12 67.9 10.6 98 95-194 21-118 (148)
149 2uy1_A Cleavage stimulation fa 98.7 3.1E-05 1.1E-09 67.1 27.1 101 3-124 11-118 (493)
150 4f3v_A ESX-1 secretion system 98.7 2.3E-07 8E-12 73.0 12.4 127 65-194 107-237 (282)
151 2fbn_A 70 kDa peptidylprolyl i 98.7 5E-08 1.7E-12 73.8 8.4 148 31-184 13-175 (198)
152 4f3v_A ESX-1 secretion system 98.7 2.9E-07 9.9E-12 72.5 12.5 188 34-230 18-238 (282)
153 3q49_B STIP1 homology and U bo 98.7 5.8E-07 2E-11 63.2 12.8 97 60-158 9-105 (137)
154 2fbn_A 70 kDa peptidylprolyl i 98.7 5.3E-08 1.8E-12 73.7 7.6 124 130-255 38-176 (198)
155 1elw_A TPR1-domain of HOP; HOP 98.7 2.5E-06 8.7E-11 57.8 15.5 98 61-160 5-102 (118)
156 3dss_A Geranylgeranyl transfer 98.7 8.4E-05 2.9E-09 60.3 26.1 231 23-264 27-304 (331)
157 4b4t_Q 26S proteasome regulato 98.7 6.9E-06 2.3E-10 70.0 21.1 200 29-228 11-244 (434)
158 3upv_A Heat shock protein STI1 98.6 1.4E-06 4.6E-11 60.4 13.7 96 97-194 6-101 (126)
159 2dba_A Smooth muscle cell asso 98.6 3.8E-06 1.3E-10 59.7 16.4 99 59-160 27-129 (148)
160 1elw_A TPR1-domain of HOP; HOP 98.6 2.5E-06 8.7E-11 57.8 14.9 97 96-194 5-101 (118)
161 4b4t_Q 26S proteasome regulato 98.6 4.9E-06 1.7E-10 70.9 19.7 198 66-263 10-244 (434)
162 4gcn_A Protein STI-1; structur 98.6 1.3E-06 4.3E-11 60.7 12.9 58 63-121 11-68 (127)
163 2xcb_A PCRH, regulatory protei 98.6 9.7E-07 3.3E-11 62.7 12.4 96 97-194 20-115 (142)
164 2kck_A TPR repeat; tetratricop 98.6 1.2E-06 4.2E-11 58.9 12.4 95 98-194 9-106 (112)
165 3sz7_A HSC70 cochaperone (SGT) 98.6 2.4E-06 8.3E-11 62.2 14.4 99 60-160 11-109 (164)
166 2kck_A TPR repeat; tetratricop 98.6 1.9E-06 6.6E-11 57.9 12.6 97 166-264 7-106 (112)
167 4gcn_A Protein STI-1; structur 98.6 2.2E-06 7.4E-11 59.5 12.9 56 100-156 13-68 (127)
168 1elr_A TPR2A-domain of HOP; HO 98.6 1.5E-06 5.1E-11 60.3 12.0 97 61-158 5-107 (131)
169 3q49_B STIP1 homology and U bo 98.5 3.5E-06 1.2E-10 59.1 13.7 97 95-193 9-105 (137)
170 1elr_A TPR2A-domain of HOP; HO 98.5 1.4E-06 4.6E-11 60.5 11.2 62 131-193 5-66 (131)
171 3sz7_A HSC70 cochaperone (SGT) 98.5 3.3E-06 1.1E-10 61.5 13.4 99 94-194 10-108 (164)
172 1hxi_A PEX5, peroxisome target 98.5 1.8E-06 6.3E-11 59.3 11.2 89 67-157 24-112 (121)
173 2dba_A Smooth muscle cell asso 98.5 7.4E-06 2.5E-10 58.1 14.9 96 131-228 29-127 (148)
174 3ro3_A PINS homolog, G-protein 98.5 1.7E-06 5.9E-11 62.4 10.9 132 132-263 11-157 (164)
175 1hxi_A PEX5, peroxisome target 98.5 2.9E-06 9.9E-11 58.3 11.0 95 98-194 20-114 (121)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 5.5E-06 1.9E-10 71.2 14.1 123 60-184 268-404 (457)
177 1wao_1 Serine/threonine protei 98.4 4.4E-07 1.5E-11 78.4 6.8 124 25-154 9-134 (477)
178 3ro3_A PINS homolog, G-protein 98.4 3.4E-06 1.1E-10 60.9 10.6 95 62-156 11-115 (164)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 6.1E-06 2.1E-10 70.9 13.8 125 129-255 267-405 (457)
180 2xev_A YBGF; tetratricopeptide 98.4 3E-05 1E-09 53.6 14.7 91 67-159 9-105 (129)
181 2xev_A YBGF; tetratricopeptide 98.4 1.9E-05 6.5E-10 54.6 13.5 93 101-194 8-105 (129)
182 1wao_1 Serine/threonine protei 98.4 2.7E-06 9.4E-11 73.5 10.8 124 63-189 9-134 (477)
183 1ihg_A Cyclophilin 40; ppiase 98.3 1.6E-05 5.3E-10 66.3 14.0 124 24-149 225-360 (370)
184 3k9i_A BH0479 protein; putativ 98.3 3.6E-06 1.2E-10 57.4 8.4 86 36-123 4-89 (117)
185 1dce_A Protein (RAB geranylger 98.3 0.00012 4.2E-09 64.5 19.5 173 76-253 45-244 (567)
186 1ihg_A Cyclophilin 40; ppiase 98.3 1.3E-05 4.6E-10 66.7 12.8 98 131-229 224-336 (370)
187 3rkv_A Putative peptidylprolyl 98.3 2.4E-05 8.3E-10 56.7 12.7 64 130-194 63-126 (162)
188 2if4_A ATFKBP42; FKBP-like, al 98.3 5.9E-06 2E-10 68.0 10.3 148 60-229 179-328 (338)
189 1dce_A Protein (RAB geranylger 98.3 0.00012 4E-09 64.6 18.9 175 36-218 43-244 (567)
190 3rkv_A Putative peptidylprolyl 98.2 2.6E-05 9E-10 56.5 12.5 64 96-160 64-127 (162)
191 3k9i_A BH0479 protein; putativ 98.2 3.3E-06 1.1E-10 57.6 6.7 84 74-158 4-89 (117)
192 1klx_A Cysteine rich protein B 98.2 0.0001 3.5E-09 51.8 13.8 112 36-161 9-128 (138)
193 2hr2_A Hypothetical protein; a 98.2 4.7E-05 1.6E-09 54.2 11.8 96 62-158 13-130 (159)
194 3n71_A Histone lysine methyltr 98.1 1.5E-05 5E-10 68.7 10.2 124 140-263 319-463 (490)
195 3n71_A Histone lysine methyltr 98.1 5.5E-05 1.9E-09 65.2 13.7 129 174-317 318-463 (490)
196 2if4_A ATFKBP42; FKBP-like, al 98.1 1.1E-05 3.8E-10 66.3 8.7 127 133-263 182-327 (338)
197 1klx_A Cysteine rich protein B 98.1 0.00017 5.8E-09 50.6 13.5 110 145-265 10-127 (138)
198 2hr2_A Hypothetical protein; a 98.1 0.00013 4.4E-09 52.0 12.3 95 98-193 14-130 (159)
199 2l6j_A TPR repeat-containing p 98.0 4.6E-05 1.6E-09 50.9 8.6 63 201-264 5-67 (111)
200 2kat_A Uncharacterized protein 97.9 7.7E-05 2.6E-09 50.4 9.1 81 4-89 2-82 (115)
201 1na3_A Designed protein CTPR2; 97.9 0.00025 8.5E-09 45.3 11.0 61 62-123 11-71 (91)
202 2l6j_A TPR repeat-containing p 97.9 8.8E-05 3E-09 49.5 8.3 59 133-192 7-65 (111)
203 1na3_A Designed protein CTPR2; 97.8 0.00026 9.1E-09 45.1 10.0 63 97-160 11-73 (91)
204 1zu2_A Mitochondrial import re 97.8 0.00019 6.5E-09 51.0 9.5 69 73-143 15-93 (158)
205 2kat_A Uncharacterized protein 97.8 0.00036 1.2E-08 47.0 10.6 62 95-157 19-80 (115)
206 1zu2_A Mitochondrial import re 97.8 0.00027 9.1E-09 50.3 9.5 88 32-124 12-120 (158)
207 3ma5_A Tetratricopeptide repea 97.6 0.00028 9.6E-09 46.3 7.7 63 200-263 7-69 (100)
208 3ma5_A Tetratricopeptide repea 97.6 0.00069 2.3E-08 44.4 9.1 63 129-192 6-68 (100)
209 3ly7_A Transcriptional activat 97.5 0.0038 1.3E-07 51.0 14.6 64 129-194 276-339 (372)
210 3ly7_A Transcriptional activat 97.4 0.011 3.8E-07 48.3 15.8 48 92-140 191-243 (372)
211 3qww_A SET and MYND domain-con 97.3 0.0021 7.1E-08 54.5 11.1 93 212-316 310-409 (433)
212 2kc7_A BFR218_protein; tetratr 97.2 0.0019 6.5E-08 41.9 8.1 57 103-160 8-65 (99)
213 3qwp_A SET and MYND domain-con 97.2 0.003 1E-07 53.5 10.9 56 32-87 297-356 (429)
214 3qww_A SET and MYND domain-con 97.2 0.0012 4E-08 56.0 8.3 87 177-263 310-410 (433)
215 3qwp_A SET and MYND domain-con 97.1 0.0017 5.7E-08 55.1 8.5 92 172-263 294-399 (429)
216 3u64_A Protein TP_0956; tetrat 97.1 0.075 2.6E-06 41.8 16.2 85 111-197 179-272 (301)
217 2kc7_A BFR218_protein; tetratr 97.0 0.0018 6E-08 42.0 6.4 56 69-125 9-65 (99)
218 3mkq_A Coatomer beta'-subunit; 97.0 0.013 4.4E-07 54.2 14.2 155 29-225 606-761 (814)
219 3mkq_A Coatomer beta'-subunit; 97.0 0.031 1.1E-06 51.6 16.4 155 69-262 608-763 (814)
220 3bee_A Putative YFRE protein; 96.8 0.025 8.6E-07 36.2 10.1 49 111-160 25-73 (93)
221 1pc2_A Mitochondria fission pr 96.7 0.015 5.1E-07 40.9 9.1 83 77-160 15-101 (152)
222 3bee_A Putative YFRE protein; 96.7 0.034 1.2E-06 35.5 10.2 67 128-195 4-73 (93)
223 3mkq_B Coatomer subunit alpha; 96.6 0.11 3.7E-06 37.5 13.0 130 29-191 12-141 (177)
224 1pc2_A Mitochondria fission pr 96.6 0.037 1.3E-06 38.9 10.3 86 110-199 13-103 (152)
225 3u64_A Protein TP_0956; tetrat 96.4 0.052 1.8E-06 42.7 11.1 89 3-96 179-278 (301)
226 2v5f_A Prolyl 4-hydroxylase su 96.4 0.064 2.2E-06 35.1 10.3 66 129-194 4-75 (104)
227 1wy6_A Hypothetical protein ST 96.4 0.12 4.2E-06 35.2 11.9 140 106-267 18-157 (172)
228 4h7y_A Dual specificity protei 96.4 0.072 2.5E-06 37.1 10.3 56 214-270 74-129 (161)
229 4b4t_P 26S proteasome regulato 96.3 0.43 1.5E-05 40.6 23.4 311 2-319 31-387 (445)
230 2v5f_A Prolyl 4-hydroxylase su 96.3 0.07 2.4E-06 34.8 10.1 61 63-123 8-74 (104)
231 4h7y_A Dual specificity protei 96.1 0.11 3.7E-06 36.2 10.0 54 179-233 74-127 (161)
232 3mkq_B Coatomer subunit alpha; 96.0 0.27 9.1E-06 35.5 16.2 129 103-261 13-141 (177)
233 3lvg_A Clathrin heavy chain 1; 96.0 6.2E-06 2.1E-10 68.8 -13.2 252 21-309 53-324 (624)
234 1nzn_A CGI-135 protein, fissio 95.4 0.14 4.7E-06 34.6 8.4 26 135-160 79-104 (126)
235 1wy6_A Hypothetical protein ST 95.2 0.46 1.6E-05 32.5 14.0 140 71-232 18-157 (172)
236 4gns_B Protein CSD3, chitin bi 94.7 0.82 2.8E-05 41.5 13.7 128 62-192 250-398 (754)
237 1nzn_A CGI-135 protein, fissio 94.6 0.63 2.2E-05 31.4 9.9 67 128-194 33-103 (126)
238 4gns_B Protein CSD3, chitin bi 94.5 0.57 1.9E-05 42.5 12.3 45 292-338 616-660 (754)
239 2ff4_A Probable regulatory pro 94.4 0.3 1E-05 40.7 9.8 56 171-227 177-232 (388)
240 3lvg_A Clathrin heavy chain 1; 94.2 4.9E-05 1.7E-09 63.6 -12.9 191 130-336 54-275 (624)
241 2ff4_A Probable regulatory pro 94.1 0.25 8.5E-06 41.2 8.6 72 203-275 174-250 (388)
242 4b4t_P 26S proteasome regulato 94.0 2.5 8.6E-05 35.9 21.4 187 73-262 29-245 (445)
243 2wpv_A GET4, UPF0363 protein Y 94.0 1.9 6.6E-05 34.4 20.5 167 131-316 34-215 (312)
244 1v54_E Cytochrome C oxidase po 93.5 0.66 2.2E-05 29.7 7.6 62 180-242 25-86 (109)
245 4fhn_B Nucleoporin NUP120; pro 93.2 3.3 0.00011 40.0 15.8 83 131-215 900-986 (1139)
246 1v54_E Cytochrome C oxidase po 92.9 1.1 3.9E-05 28.6 8.7 46 218-263 28-73 (109)
247 4fhn_B Nucleoporin NUP120; pro 91.7 3.9 0.00013 39.5 14.1 146 136-289 818-990 (1139)
248 2y69_E Cytochrome C oxidase su 91.7 1.3 4.6E-05 30.0 7.6 50 180-229 68-117 (152)
249 3lpz_A GET4 (YOR164C homolog); 91.7 4.5 0.00015 32.6 24.3 167 132-317 37-215 (336)
250 4b4t_R RPN7, 26S proteasome re 91.2 2.8 9.5E-05 35.4 11.3 63 24-87 133-195 (429)
251 1zbp_A Hypothetical protein VP 91.0 4.4 0.00015 31.4 11.7 54 175-229 7-60 (273)
252 2y69_E Cytochrome C oxidase su 91.0 2.6 8.9E-05 28.7 8.7 47 148-194 71-117 (152)
253 4b4t_R RPN7, 26S proteasome re 89.6 4.9 0.00017 33.9 11.5 97 132-228 133-236 (429)
254 3o48_A Mitochondria fission 1 89.3 3.7 0.00013 27.9 9.9 68 93-160 38-108 (134)
255 3ffl_A Anaphase-promoting comp 88.2 2.4 8.2E-05 30.1 7.2 63 25-87 23-90 (167)
256 3txn_A 26S proteasome regulato 88.0 11 0.00036 31.4 26.8 289 23-319 20-344 (394)
257 4ady_A RPN2, 26S proteasome re 87.5 19 0.00064 33.8 22.7 155 103-263 498-657 (963)
258 4ady_A RPN2, 26S proteasome re 87.3 19 0.00066 33.7 21.2 11 306-316 646-656 (963)
259 3kea_A K1L; tropism, ANK repea 86.8 2.9 9.9E-05 32.9 8.0 203 27-260 33-243 (285)
260 1wdy_A 2-5A-dependent ribonucl 86.4 3.5 0.00012 31.9 8.4 49 211-259 190-240 (285)
261 3lpz_A GET4 (YOR164C homolog); 85.4 13 0.00045 30.0 20.5 169 23-228 36-215 (336)
262 2uwj_G Type III export protein 85.0 5.6 0.00019 25.4 7.5 85 179-272 20-104 (115)
263 3ffl_A Anaphase-promoting comp 85.0 8.4 0.00029 27.4 9.7 128 124-264 12-151 (167)
264 3o48_A Mitochondria fission 1 84.8 7.3 0.00025 26.5 10.9 74 125-200 35-111 (134)
265 3eiq_C Programmed cell death p 84.7 4.2 0.00014 33.2 7.9 73 203-276 220-294 (358)
266 2p58_C Putative type III secre 84.6 5.9 0.0002 25.3 8.6 86 179-273 21-106 (116)
267 1y8m_A FIS1; mitochondria, unk 83.2 9.2 0.00031 26.4 11.5 49 112-160 59-107 (144)
268 2nsz_A Programmed cell death p 80.8 11 0.00037 25.5 8.0 63 133-196 10-74 (129)
269 2p58_C Putative type III secre 80.7 8.8 0.0003 24.6 7.1 80 36-126 21-100 (116)
270 3eu9_A Huntingtin-interacting 80.7 3.1 0.0001 31.3 5.6 54 207-264 181-236 (240)
271 1ug3_A EIF4GI, eukaryotic prot 79.9 23 0.00077 28.7 11.4 24 25-48 14-37 (339)
272 1k1a_A B-cell lymphoma 3-encod 79.3 10 0.00035 28.4 8.2 85 29-118 13-99 (241)
273 2ion_A PDCD4, programmed cell 78.6 14 0.0005 25.8 8.0 63 133-196 12-76 (152)
274 1k1a_A B-cell lymphoma 3-encod 78.4 12 0.00041 28.0 8.3 185 67-268 13-209 (241)
275 2uwj_G Type III export protein 77.9 11 0.00038 24.1 7.0 77 111-195 22-98 (115)
276 2wpv_A GET4, UPF0363 protein Y 76.2 28 0.00096 27.8 20.3 113 24-154 35-158 (312)
277 1y8m_A FIS1; mitochondria, unk 75.5 17 0.00059 25.0 13.3 72 127-200 36-110 (144)
278 2nsz_A Programmed cell death p 74.5 14 0.00047 25.0 6.7 65 62-127 9-75 (129)
279 3esl_A Checkpoint serine/threo 73.7 24 0.00083 26.0 10.1 56 108-163 92-148 (202)
280 3ygs_P Procaspase 9; apoptosis 73.0 9.4 0.00032 24.3 5.3 34 37-77 52-85 (97)
281 2ion_A PDCD4, programmed cell 72.8 21 0.00073 24.9 7.8 67 61-128 10-78 (152)
282 1wdy_A 2-5A-dependent ribonucl 71.8 10 0.00035 29.2 6.5 24 246-269 190-213 (285)
283 3esl_A Checkpoint serine/threo 71.7 28 0.00094 25.7 9.3 72 57-129 77-149 (202)
284 1zbp_A Hypothetical protein VP 71.6 34 0.0011 26.6 14.4 116 103-229 5-129 (273)
285 2r9g_A AAA ATPase, central reg 71.5 27 0.00094 25.6 9.1 52 109-161 28-84 (204)
286 2d2s_A Exocyst complex compone 70.3 33 0.0011 26.0 9.7 89 66-157 24-118 (235)
287 3kea_A K1L; tropism, ANK repea 70.2 17 0.00059 28.3 7.5 182 69-272 37-225 (285)
288 2fe3_A Peroxide operon regulat 69.3 22 0.00076 24.5 7.0 36 109-144 35-70 (145)
289 2p1h_A APAF-1, apoptotic prote 68.2 18 0.00063 22.6 5.9 17 36-52 50-66 (94)
290 1mzb_A Ferric uptake regulatio 67.6 19 0.00064 24.5 6.3 58 87-145 10-68 (136)
291 2w57_A Ferric uptake regulatio 67.3 21 0.00072 24.8 6.6 59 86-145 8-67 (150)
292 2d2s_A Exocyst complex compone 66.4 40 0.0014 25.6 8.8 90 136-228 24-119 (235)
293 3jxi_A Vanilloid receptor-rela 66.3 3.9 0.00013 31.4 2.9 57 29-85 9-71 (260)
294 2xig_A Ferric uptake regulatio 65.4 18 0.00062 25.1 5.9 59 86-145 18-76 (150)
295 3hra_A Ankyrin repeat family p 64.3 15 0.00051 26.6 5.7 16 31-46 11-26 (201)
296 3eyy_A Putative iron uptake re 63.7 17 0.00059 25.1 5.5 34 111-144 33-66 (145)
297 2wvi_A Mitotic checkpoint seri 62.7 28 0.00097 24.6 6.4 73 19-96 60-132 (164)
298 3txn_A 26S proteasome regulato 61.4 70 0.0024 26.6 25.5 167 61-227 20-208 (394)
299 2w57_A Ferric uptake regulatio 60.8 35 0.0012 23.6 6.7 35 145-179 32-66 (150)
300 3ctd_A Putative ATPase, AAA fa 60.4 49 0.0017 24.5 8.0 53 109-161 49-106 (213)
301 1oai_A Nuclear RNA export fact 60.1 7.4 0.00025 22.1 2.5 20 2-21 35-55 (59)
302 1mzb_A Ferric uptake regulatio 59.7 34 0.0012 23.2 6.4 56 121-177 9-65 (136)
303 3eu9_A Huntingtin-interacting 59.5 24 0.00083 26.2 6.3 15 244-258 183-197 (240)
304 3bge_A Predicted ATPase; struc 58.9 51 0.0017 24.2 8.0 32 109-140 21-52 (201)
305 4ets_A Ferric uptake regulatio 58.1 30 0.001 24.4 6.0 70 77-147 14-86 (162)
306 4a1g_A Mitotic checkpoint seri 56.9 47 0.0016 23.2 9.3 50 114-163 84-134 (152)
307 2xig_A Ferric uptake regulatio 56.5 47 0.0016 23.0 7.8 45 120-165 17-61 (150)
308 3t8k_A Uncharacterized protein 56.2 34 0.0012 24.6 6.3 160 31-197 12-183 (186)
309 2b7e_A PRE-mRNA processing pro 55.6 16 0.00055 20.6 3.3 29 147-175 3-31 (59)
310 4ets_A Ferric uptake regulatio 55.1 37 0.0013 24.0 6.1 60 120-180 23-84 (162)
311 3eyy_A Putative iron uptake re 54.8 31 0.001 23.8 5.6 56 121-178 10-65 (145)
312 2b7e_A PRE-mRNA processing pro 54.3 15 0.00051 20.8 3.1 30 3-32 2-31 (59)
313 2rfa_A Transient receptor pote 54.2 63 0.0021 23.8 8.1 18 29-46 7-24 (232)
314 2qx5_A Nucleoporin NIC96; mRNA 53.9 1.3E+02 0.0043 27.2 16.0 23 27-49 157-179 (661)
315 4a1g_A Mitotic checkpoint seri 53.8 54 0.0018 22.9 9.0 54 78-131 83-137 (152)
316 2fe3_A Peroxide operon regulat 52.2 54 0.0018 22.5 7.1 43 121-164 13-55 (145)
317 4b4t_S RPN3, 26S proteasome re 51.0 74 0.0025 27.5 8.1 65 23-89 232-299 (523)
318 3hra_A Ankyrin repeat family p 50.6 40 0.0014 24.1 6.1 154 71-234 13-172 (201)
319 2fu4_A Ferric uptake regulatio 50.4 39 0.0013 20.3 6.8 58 86-144 8-66 (83)
320 2fu4_A Ferric uptake regulatio 50.2 39 0.0013 20.2 6.6 58 48-109 8-66 (83)
321 4aez_C MAD3, mitotic spindle c 50.0 43 0.0015 25.2 5.8 85 7-96 97-186 (223)
322 3b7b_A Euchromatic histone-lys 49.9 39 0.0013 25.1 6.1 79 176-263 152-235 (237)
323 3bqo_A Telomeric repeat-bindin 49.8 74 0.0025 23.3 8.2 21 173-193 125-145 (211)
324 1qsa_A Protein (soluble lytic 49.7 1.4E+02 0.0049 26.6 23.4 115 145-263 229-347 (618)
325 3bu8_A Telomeric repeat-bindin 49.0 80 0.0027 23.5 11.5 68 216-285 88-162 (235)
326 2r9g_A AAA ATPase, central reg 48.9 77 0.0026 23.3 10.3 61 66-127 17-85 (204)
327 2zu6_B Programmed cell death p 48.7 1E+02 0.0034 24.6 12.5 69 203-272 169-239 (307)
328 2etb_A Transient receptor pote 48.1 41 0.0014 25.4 6.0 59 28-86 5-69 (256)
329 3l6a_A Eukaryotic translation 48.1 91 0.0031 25.5 8.1 132 132-263 14-150 (364)
330 3ygs_P Procaspase 9; apoptosis 47.6 46 0.0016 21.0 5.1 36 145-184 52-87 (97)
331 2wvi_A Mitotic checkpoint seri 47.4 73 0.0025 22.6 9.2 51 114-164 79-130 (164)
332 1qsa_A Protein (soluble lytic 46.8 1.6E+02 0.0054 26.3 27.9 23 242-264 388-410 (618)
333 1ug3_A EIF4GI, eukaryotic prot 46.6 55 0.0019 26.5 6.6 65 132-197 13-78 (339)
334 3bqo_A Telomeric repeat-bindin 46.1 24 0.00083 25.8 3.8 21 30-50 125-145 (211)
335 3aji_A 26S proteasome non-ATPa 45.1 65 0.0022 23.6 6.6 18 29-46 10-27 (231)
336 3bu8_A Telomeric repeat-bindin 44.5 96 0.0033 23.1 11.0 22 173-194 122-143 (235)
337 1n11_A Ankyrin; clathrin, BAND 44.4 62 0.0021 26.9 7.0 40 7-46 27-68 (437)
338 2o03_A Probable zinc uptake re 44.1 26 0.0009 23.6 3.8 47 295-341 16-62 (131)
339 3e3v_A Regulatory protein RECX 44.1 86 0.0029 22.5 8.8 115 37-157 48-164 (177)
340 3ltm_A Alpha-REP4; protein eng 43.7 90 0.0031 22.6 16.3 109 128-248 93-201 (211)
341 3aji_A 26S proteasome non-ATPa 43.0 44 0.0015 24.7 5.3 19 67-85 10-28 (231)
342 3mwm_A ZUR, putative metal upt 43.0 24 0.00081 24.1 3.4 47 295-341 19-65 (139)
343 3ljn_A Hypothetical protein; a 42.4 1.3E+02 0.0045 24.1 10.4 219 21-260 17-266 (364)
344 2o03_A Probable zinc uptake re 42.4 42 0.0014 22.6 4.6 37 248-284 23-59 (131)
345 3mwm_A ZUR, putative metal upt 41.7 38 0.0013 23.1 4.3 42 243-284 21-62 (139)
346 3c1d_A Protein ORAA, regulator 41.5 88 0.003 21.9 9.8 99 39-145 47-145 (159)
347 2rg8_A Programmed cell death p 40.6 55 0.0019 23.2 5.1 24 134-157 14-37 (165)
348 3t8k_A Uncharacterized protein 40.6 98 0.0033 22.1 10.0 18 182-199 91-108 (186)
349 4g8k_A 2-5A-dependent ribonucl 40.5 1.3E+02 0.0046 23.7 11.0 36 8-43 39-77 (337)
350 2rg8_A Programmed cell death p 40.3 46 0.0016 23.6 4.6 24 64-87 14-37 (165)
351 3f3f_C Nucleoporin NUP85; stru 39.6 77 0.0026 27.7 6.6 74 109-184 495-568 (570)
352 3ctd_A Putative ATPase, AAA fa 39.3 1.2E+02 0.004 22.6 9.7 63 65-127 37-107 (213)
353 2pnn_A Transient receptor pote 39.0 26 0.00088 26.9 3.5 58 28-85 16-79 (273)
354 4gq2_M Nucleoporin NUP120; bet 38.6 2.6E+02 0.009 26.5 11.6 125 206-338 816-950 (950)
355 2qq8_A TBC1 domain family memb 37.7 1.1E+02 0.0037 24.7 7.0 40 225-264 218-257 (334)
356 3pvs_A Replication-associated 35.7 2E+02 0.0069 24.3 15.6 119 111-231 167-326 (447)
357 2yru_A Steroid receptor RNA ac 34.8 64 0.0022 21.3 4.3 45 42-89 46-90 (118)
358 2ijq_A Hypothetical protein; s 34.7 1.2E+02 0.0041 21.4 7.0 52 212-263 44-103 (161)
359 3f3f_C Nucleoporin NUP85; stru 34.4 86 0.003 27.4 6.1 90 21-115 478-569 (570)
360 3pvs_A Replication-associated 34.2 2.1E+02 0.0073 24.1 13.5 55 107-161 267-326 (447)
361 2rfa_A Transient receptor pote 34.0 1.1E+02 0.0037 22.4 6.3 21 105-125 161-181 (232)
362 3twr_A Tankyrase-2; ankyrin re 33.7 1.1E+02 0.0038 20.8 6.4 10 142-151 17-26 (165)
363 1n11_A Ankyrin; clathrin, BAND 33.7 1.2E+02 0.0042 25.0 7.2 115 27-154 16-134 (437)
364 3mv2_A Coatomer subunit alpha; 33.5 1.9E+02 0.0064 23.2 12.7 64 274-337 189-256 (325)
365 3bge_A Predicted ATPase; struc 33.4 1.4E+02 0.0049 21.9 9.5 60 66-125 10-77 (201)
366 2etb_A Transient receptor pote 33.3 72 0.0025 24.0 5.3 22 105-126 9-30 (256)
367 2p1h_A APAF-1, apoptotic prote 32.1 91 0.0031 19.3 6.2 32 144-179 50-81 (94)
368 1bd8_A P19INK4D CDK4/6 inhibit 31.4 61 0.0021 21.9 4.2 20 28-47 5-24 (156)
369 3eiq_C Programmed cell death p 30.4 2.2E+02 0.0076 23.2 15.8 94 168-262 220-319 (358)
370 4b4t_S RPN3, 26S proteasome re 30.3 2.7E+02 0.0093 24.2 11.4 65 130-194 231-299 (523)
371 4fke_A Aminopeptidase N; zinc 29.6 3.6E+02 0.012 25.4 18.7 48 107-157 738-785 (909)
372 1oyz_A Hypothetical protein YI 29.3 1.9E+02 0.0065 22.0 20.3 18 128-145 140-157 (280)
373 4aez_C MAD3, mitotic spindle c 29.1 1.8E+02 0.0062 21.8 8.9 52 112-163 131-183 (223)
374 4gq2_M Nucleoporin NUP120; bet 28.7 3.8E+02 0.013 25.4 11.6 48 202-249 899-950 (950)
375 3jxi_A Vanilloid receptor-rela 28.3 41 0.0014 25.5 3.0 39 7-45 106-160 (260)
376 3crd_A Raidd; caspase recruitm 27.3 1E+02 0.0035 19.5 4.3 29 36-71 49-77 (100)
377 1uzc_A Hypothetical protein FL 26.9 64 0.0022 19.0 2.9 37 304-340 13-49 (71)
378 3qil_A Clathrin heavy chain 1; 26.7 60 0.002 21.6 3.0 50 63-115 35-84 (125)
379 2yru_A Steroid receptor RNA ac 26.3 1.4E+02 0.0049 19.7 5.4 42 82-123 48-89 (118)
380 2ijq_A Hypothetical protein; s 25.9 1.8E+02 0.006 20.5 7.6 49 109-157 46-102 (161)
381 4fke_A Aminopeptidase N; zinc 25.7 4.3E+02 0.015 24.9 16.9 154 100-262 691-858 (909)
382 3vu7_H DNA repair protein REV1 25.6 1.5E+02 0.0052 19.7 5.2 29 55-83 55-83 (124)
383 1zl8_A LIN-7; heterodimer, alp 25.5 87 0.003 16.9 4.7 15 38-52 9-23 (53)
384 1q2z_A ATP-dependent DNA helic 25.3 1E+02 0.0035 20.4 4.1 30 111-140 43-73 (120)
385 3t5v_B Nuclear mRNA export pro 24.4 1.7E+02 0.0058 24.9 6.2 64 131-194 177-249 (455)
386 2xai_A ASB-9, ankyrin repeat a 24.2 2.3E+02 0.0078 21.3 7.1 17 29-45 7-23 (261)
387 2f6m_A Suppressor protein STP2 23.5 1.2E+02 0.0039 17.6 5.3 41 99-140 6-46 (65)
388 4fjo_A DNA repair protein REV1 23.3 1.5E+02 0.005 18.7 5.8 34 53-86 26-59 (97)
389 4g8k_A 2-5A-dependent ribonucl 23.3 2.7E+02 0.0093 21.8 8.8 138 8-164 182-328 (337)
390 2p22_A Suppressor protein STP2 23.1 2.1E+02 0.0072 20.5 5.6 48 95-143 111-158 (174)
391 2dod_A Transcription elongatio 22.6 80 0.0027 19.3 2.9 37 304-340 15-51 (82)
392 3ljn_A Hypothetical protein; a 22.5 2.8E+02 0.0095 22.1 7.2 93 61-162 19-113 (364)
393 3qil_A Clathrin heavy chain 1; 22.4 81 0.0028 21.0 3.0 53 97-152 34-86 (125)
394 2jp7_A MRNA export factor MEX6 21.9 31 0.001 19.4 0.8 19 2-21 34-52 (57)
395 2keb_A DNA polymerase subunit 20.9 1.7E+02 0.0058 18.6 6.6 31 79-109 28-58 (101)
396 2qfz_A TBC1 domain family memb 20.9 1.9E+02 0.0065 23.3 5.8 111 4-121 189-312 (345)
397 3d9h_A CDNA FLJ77766, highly s 20.8 2.9E+02 0.0098 21.1 8.1 19 28-46 62-80 (285)
398 1rw2_A ATP-dependent DNA helic 20.7 1.2E+02 0.0041 21.1 3.8 31 110-140 73-104 (152)
399 3v31_A Ankyrin repeat family A 20.7 2.1E+02 0.007 19.4 6.8 11 213-223 145-155 (167)
400 3t5v_B Nuclear mRNA export pro 20.6 3.2E+02 0.011 23.2 7.1 29 203-231 179-207 (455)
401 2zu6_B Programmed cell death p 20.0 3.3E+02 0.011 21.6 14.1 46 237-283 168-213 (307)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.7e-36 Score=259.73 Aligned_cols=209 Identities=12% Similarity=0.171 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC--------
Q 044084 39 EKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE-------- 110 (343)
Q Consensus 39 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 110 (343)
..+..+.+.+.+++....| ...++.+|++|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~sp--e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSP--EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp -----------------CH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred chHHHHHHHHHHhcccCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 4566677788888776654 357889999999999999999999999999999999999999999987653
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHH
Q 044084 111 -VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189 (343)
Q Consensus 111 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (343)
++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccC
Q 044084 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 249 (343)
Q Consensus 190 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (343)
+|.+.|+.||..||+.||.+|++.|++++|.++|++|.+.+..|+..||+.++..|...+
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999988754
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.7e-35 Score=254.42 Aligned_cols=208 Identities=13% Similarity=0.111 Sum_probs=180.8
Q ss_pred hhHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCc-------
Q 044084 4 QSKLHYYEKMKSAGIVLDSG-CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGR------- 75 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------- 75 (343)
..+..+.+++.+.+..+++. .++.+|+.|++.|++++|.++|++|.+.|+.|+ ..+||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCC
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhc
Confidence 34666778888887766554 588999999999999999999999999999988 8999999999987654
Q ss_pred --HHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHH
Q 044084 76 --AFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVV 153 (343)
Q Consensus 76 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (343)
.+.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 044084 154 ESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIG 214 (343)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 214 (343)
++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999988643
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-33 Score=247.28 Aligned_cols=231 Identities=10% Similarity=0.040 Sum_probs=194.4
Q ss_pred cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHH
Q 044084 107 SIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (343)
+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|.++|+++.+.++ .+..++..++.++...|++++|..
T Consensus 284 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp THHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred CcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHH
Confidence 344444444444444332 36788888899999999999999999999887765 467788899999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCC
Q 044084 187 VYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGC 266 (343)
Q Consensus 187 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 266 (343)
+++++.+.. +.+..+++.++..|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+
T Consensus 361 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 361 ISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999988653 5577889999999999999999999999998865 4568899999999999999999999999998763
Q ss_pred CchHHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcc--HH
Q 044084 267 EPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFYNEFRMN----GGVID--RA 325 (343)
Q Consensus 267 ~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~ 325 (343)
+.+..+|..++.+|.+.|++++|.. |..++..|.+.|++++|+++|+++.+. +..|+ ..
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 3477899999999999999999987 889999999999999999999999876 66787 78
Q ss_pred HHHHHHHHHhcccccccC
Q 044084 326 MAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 326 ~~~~l~~~~~~~g~~~~a 343 (343)
+|..++.+|.+.|++++|
T Consensus 518 ~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHH
Confidence 899999999999998864
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-31 Score=239.99 Aligned_cols=245 Identities=9% Similarity=-0.005 Sum_probs=197.2
Q ss_pred CChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHH
Q 044084 93 EDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIV 172 (343)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (343)
++..++..++..+.+.|++++|..+|+++.+.++. +..++..++.++.+.|++++|.++++++.+..+ .+..+|+.++
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 380 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVG 380 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHH
Confidence 57778888889999999999999999999887643 677788888888888888888888888876554 5677788888
Q ss_pred HHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChH
Q 044084 173 NGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR 252 (343)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (343)
..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|+++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHH
Confidence 88888888888888888887753 3456788888888888888888888888888765 457788888888888888888
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh----------------------HHHHHHHHHhcCCHHHHHH
Q 044084 253 DAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK----------------------YTTVISAYNMAREFDMCVK 310 (343)
Q Consensus 253 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~----------------------~~~l~~~~~~~g~~~~a~~ 310 (343)
+|.++|+++.+.. +.+..+|..++..|.+.|++++|.. |..++.+|.+.|++++|++
T Consensus 459 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888887653 3367788888888888888887765 5667778888888888888
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 311 FYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 311 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
.|+++.+.+ +.+..+|..+..+|.+.|++++|
T Consensus 538 ~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 538 ALNQGLLLS-TNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 888887765 33677888888888888887764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.6e-27 Score=201.96 Aligned_cols=330 Identities=11% Similarity=0.081 Sum_probs=259.3
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|++.++.+.+..+ .+...+..+...+.+.|++++|...++...+.. |.+..+|..+...+.+.|++++|++
T Consensus 14 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~----p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 57888998888887643 355667777788888899999999888877654 3336788889999999999999999
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL 161 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (343)
.|+++.+.. +.+..+|..+..++.+.|++++|...++++.+..+. +...+..+...+...|++++|.+.|+++....+
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 166 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999888763 224557888888888899999999999888887643 566777888888888999999999988887654
Q ss_pred CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHH
Q 044084 162 NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241 (343)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (343)
.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...++...+.. +.+..++..+
T Consensus 167 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 243 (388)
T 1w3b_A 167 -NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp -TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHH
Confidence 456678888888888999999999998888764 3345677778888888888888888888887764 3456778888
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHH
Q 044084 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFD 306 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~ 306 (343)
...|...|++++|...|+++.+.+ +.+..++..+..++.+.|++++|.. +..+...+...|+++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888888753 2246678888888888888888876 677788888888888
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 307 MCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 307 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
+|++.++++.+.. +.+..++..+..+|.+.|++++|
T Consensus 323 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 8888888887753 23466788888888888887764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=7.8e-27 Score=197.73 Aligned_cols=326 Identities=13% Similarity=0.096 Sum_probs=282.5
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|...++...+.. +.+..+|..+...+.+.|++++|...|+++.+.. |....+|..+..++...|++++|.+
T Consensus 48 ~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 48 RLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK----PDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5678889998888764 3578899999999999999999999999998754 3336789999999999999999999
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL 161 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (343)
.|+++.+... .+...+..+...+...|++++|...|+++.+..+. +..+|..+...+...|++++|...|+++.+.++
T Consensus 123 ~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 200 (388)
T 1w3b_A 123 AYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200 (388)
T ss_dssp HHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999988642 24556777888899999999999999999987643 688999999999999999999999999998765
Q ss_pred CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHH
Q 044084 162 NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241 (343)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (343)
.+...|..+...+...|++++|...+++..... +.+..++..+..++.+.|++++|...|+.+.+.+ +.+..+|..+
T Consensus 201 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 277 (388)
T 1w3b_A 201 -NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNL 277 (388)
T ss_dssp -TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 456788899999999999999999999998874 3357788999999999999999999999999875 4467889999
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHH
Q 044084 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFD 306 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~ 306 (343)
...+.+.|++++|...|+++.+. .+.+..++..+...+.+.|++++|.. +..+...+.+.|+++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999886 34578899999999999999999987 788999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhcccc
Q 044084 307 MCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQ 339 (343)
Q Consensus 307 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 339 (343)
+|++.|+++.+... .+...|..+..++.+.|+
T Consensus 357 ~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 357 EALMHYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhCC-CCHHHHHhHHHHHHHccC
Confidence 99999999998542 245668888888776653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=3.3e-24 Score=185.15 Aligned_cols=316 Identities=11% Similarity=0.070 Sum_probs=246.5
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHH
Q 044084 5 SKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFR 84 (343)
Q Consensus 5 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 84 (343)
.+...+..+.... +.+...+..+...+.+.|++++|..+|+++.+.. |.+..+|..+..++...|++++|+..|+
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD----PDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444555555543 2467788999999999999999999999988754 3336889999999999999999999999
Q ss_pred HHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHhcCcHhHH
Q 044084 85 DMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL---EVFLKL------------VLMYIEEGMVEKT 149 (343)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a 149 (343)
++.+.+. .+..++..+..++.+.|++++|...|+++.+..+. +. ..+..+ ...+...|++++|
T Consensus 85 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 85 KVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9988753 35778888999999999999999999999886532 34 555555 4448889999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 150 LEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
+..|+++.+..+ .+..++..+..+|...|++++|...|+++.+.. +.+..++..+...|...|++++|...|+.+.+.
T Consensus 163 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999987765 567788899999999999999999999988763 456788899999999999999999999999876
Q ss_pred CCCcChhhHHHH------------HHHHHccCChHHHHHHHHHHhhCCCCch-----HHHHHHHHHHHhcccChhHHHh-
Q 044084 230 GFDKCVVAYSSM------------VAMYGKTGRIRDAMRLVAKMKPKGCEPN-----VWIYNSLMDMHGRAKNLRQLEK- 291 (343)
Q Consensus 230 ~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~- 291 (343)
. +.+...+..+ ...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|..
T Consensus 241 ~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 241 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4 3344445444 78889999999999999999875 343 4577888889999999998877
Q ss_pred --------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 044084 292 --------------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGV 333 (343)
Q Consensus 292 --------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 333 (343)
|..+..+|...|++++|...++++.+.... +...+..+..+
T Consensus 318 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 372 (450)
T 2y4t_A 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 888899999999999999999999885322 34556656533
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-23 Score=184.97 Aligned_cols=330 Identities=11% Similarity=0.041 Sum_probs=270.0
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+..|+++.+.+ |+..+|..+..++.+.|++++|...++++.+.+ |.+..+|..+..++...|++++|..
T Consensus 21 ~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 21 KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK----PDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6789999999999875 688999999999999999999999999998765 3346889999999999999999999
Q ss_pred HHHHHHhcCCCCC-------------------------------------------------------------------
Q 044084 82 FFRDMKEKGILED------------------------------------------------------------------- 94 (343)
Q Consensus 82 ~~~~~~~~~~~~~------------------------------------------------------------------- 94 (343)
.|+++...+...+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 9999877642110
Q ss_pred -----------hHhHHHHHHHHh---cccCHHHHHHHHHHHHH-----c--CC------CCCHHHHHHHHHHHHhcCcHh
Q 044084 95 -----------PSVYASLICSFA---SIAEVKVAEELFKEAEE-----K--GM------LRDLEVFLKLVLMYIEEGMVE 147 (343)
Q Consensus 95 -----------~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~~l~~~~~~~~~~~ 147 (343)
...+......+. +.|+++.|...++++.+ . .+ +.+..++..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 222222223333 37999999999999888 3 11 124667888899999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044084 148 KTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQ 227 (343)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 227 (343)
+|...|+++.+..+. ...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++...
T Consensus 255 ~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 255 GAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999887654 7788889999999999999999999988764 3456788888999999999999999999998
Q ss_pred HcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh----------------
Q 044084 228 QKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------- 291 (343)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------- 291 (343)
+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|..
T Consensus 332 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 332 ELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp HTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred HhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 875 4467788899999999999999999999988752 2356778888899999999998876
Q ss_pred -----HHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 292 -----YTTVISAYNM---AREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 292 -----~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
+..+...+.. .|++++|...++++..... .+...+..+..+|.+.|++++|
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHH
Confidence 5567778888 8999999999999988642 3566788899999999988764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.2e-22 Score=175.33 Aligned_cols=329 Identities=12% Similarity=0.043 Sum_probs=264.0
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+.+|+++.+..+ .+..++..+..++.+.|++++|...|+++.+.+ |....++..+...+...|++++|.+
T Consensus 41 ~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----MDFTAARLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 67899999999998643 578899999999999999999999999998875 3336889999999999999999999
Q ss_pred HHHHHHhcCCCCCh---HhHHHH------------HHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 044084 82 FFRDMKEKGILEDP---SVYASL------------ICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMV 146 (343)
Q Consensus 82 ~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (343)
.|+++.+.... +. ..+..+ ...+...|++++|...++++.+..+ .+..++..+..+|.+.|++
T Consensus 116 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 193 (450)
T 2y4t_A 116 DFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEP 193 (450)
T ss_dssp HHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCH
Confidence 99999886422 33 455544 3448899999999999999998764 3789999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHH------------HHHHHccC
Q 044084 147 EKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASI------------INAYCRIG 214 (343)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l------------l~~~~~~~ 214 (343)
++|+++|+++.+..+ .+..++..+...+...|++++|...|+++.... +.+...+..+ ...+...|
T Consensus 194 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (450)
T 2y4t_A 194 RKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDG 271 (450)
T ss_dssp GGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999987764 567789999999999999999999999998763 2233444444 78899999
Q ss_pred ChhHHHHHHHHHHHcCCCcC-----hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHH
Q 044084 215 LYSKAEKVFIEMQQKGFDKC-----VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQL 289 (343)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 289 (343)
++++|...|+.+.+.. |+ ...+..+...+.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|
T Consensus 272 ~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 272 RYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp CHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999864 43 3478889999999999999999999998752 33678999999999999999999
Q ss_pred Hh---------------HHHHH------------HHHHhcC-----CHHHHHHHHHHH-HhCCC--Ccc-------HHHH
Q 044084 290 EK---------------YTTVI------------SAYNMAR-----EFDMCVKFYNEF-RMNGG--VID-------RAMA 327 (343)
Q Consensus 290 ~~---------------~~~l~------------~~~~~~g-----~~~~a~~~~~~m-~~~~~--~p~-------~~~~ 327 (343)
.. +..+. ..|...| ..+++.+.|+++ .+... .|+ ...+
T Consensus 349 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~ 428 (450)
T 2y4t_A 349 IQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 428 (450)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHH
Confidence 87 33333 2233334 566778888863 33211 122 2367
Q ss_pred HHHHHHHhccccccc
Q 044084 328 GIMVGVFSKLSQIEE 342 (343)
Q Consensus 328 ~~l~~~~~~~g~~~~ 342 (343)
..+..+|...|+.+.
T Consensus 429 ~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 429 IDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHhCCHHH
Confidence 888888888887654
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=9.1e-21 Score=158.35 Aligned_cols=307 Identities=14% Similarity=0.100 Sum_probs=152.6
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+..|+++.+..+ .+..++..+...+...|++++|...|+++.+.. |.....|..+...+...|++++|..
T Consensus 18 ~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK----MDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCcchHHHHHHHHHHHcCChHHHHH
Confidence 34455555555554432 234455555555555555555555555554432 1123445555555555555555555
Q ss_pred HHHHHHhcCCC--CChHhHHHH------------HHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHh
Q 044084 82 FFRDMKEKGIL--EDPSVYASL------------ICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVE 147 (343)
Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (343)
.|++..+.... .+...+..+ ...+...|++++|...++++.+..+. +..++..+...+...|+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3ieg_A 93 DFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPR 171 (359)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHH
Confidence 55555443210 122222222 24444555555555555555544322 4455555555555555555
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHH------------HHHHHHHccCC
Q 044084 148 KTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYA------------SIINAYCRIGL 215 (343)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~------------~ll~~~~~~~~ 215 (343)
+|...++++.+..+ .+..++..+...+...|++++|...+++..+.. +.+...+. .+...+.+.|+
T Consensus 172 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (359)
T 3ieg_A 172 KAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGR 249 (359)
T ss_dssp HHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55555555554432 234445555555555555555555555554432 11112111 11333445555
Q ss_pred hhHHHHHHHHHHHcCCCcCh----hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcccChhHHH
Q 044084 216 YSKAEKVFIEMQQKGFDKCV----VAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEP-NVWIYNSLMDMHGRAKNLRQLE 290 (343)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 290 (343)
+++|...++.+.+.. +.+. ..+..+..++...|++++|...+++..+. .| +..+
T Consensus 250 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~------------------ 308 (359)
T 3ieg_A 250 YTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNA------------------ 308 (359)
T ss_dssp HHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH------------------
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHH------------------
Confidence 555555555555433 1111 12233444555555555555555555443 12 2222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccc
Q 044084 291 KYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQ 339 (343)
Q Consensus 291 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 339 (343)
+..+...+...|++++|.+.|++..+... -+...+..+..+....++
T Consensus 309 -~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 309 -LKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHH
Confidence 55666777788999999999999998642 235556666666655443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.7e-21 Score=171.88 Aligned_cols=330 Identities=11% Similarity=0.096 Sum_probs=257.3
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+..|+++.+..+ .+..++..+..++.+.|++++|.+.|+++.+.+ |.+..++..+..++...|++++|++
T Consensus 40 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK----PDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp CCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 57889999999998754 578899999999999999999999999998765 3346889999999999999999999
Q ss_pred HHHHHHhcCC------------------------------------CCChH-----------------------------
Q 044084 82 FFRDMKEKGI------------------------------------LEDPS----------------------------- 96 (343)
Q Consensus 82 ~~~~~~~~~~------------------------------------~~~~~----------------------------- 96 (343)
.|+.+....- .|+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (537)
T 3fp2_A 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYA 194 (537)
T ss_dssp HHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHH
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHH
Confidence 9864421100 01110
Q ss_pred -hHHHHHHHHhc--------ccCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 97 -VYASLICSFAS--------IAEVKVAEELFKEAEEKGMLRD-------LEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 97 -~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
....+...+.. .+++++|..+++++.+..+. + ..++..+...+...|++++|...|++.....
T Consensus 195 ~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~ 273 (537)
T 3fp2_A 195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273 (537)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 11111111111 14788888888888876533 3 2356777788889999999999999998876
Q ss_pred CCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHH
Q 044084 161 LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSS 240 (343)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+ +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..
T Consensus 274 ~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 349 (537)
T 3fp2_A 274 P--TPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQ 349 (537)
T ss_dssp C--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHH
T ss_pred C--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4 46788889999999999999999999998874 3457788889999999999999999999998875 446788999
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------------HHHHHHHH
Q 044084 241 MVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------------YTTVISAY 299 (343)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------------~~~l~~~~ 299 (343)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.. +......+
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 3356688888999999999999987 22334566
Q ss_pred Hhc----------CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 300 NMA----------REFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 300 ~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
.+. |++++|+..|++..+... .+...+..+..+|.+.|++++|
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHH
Confidence 666 999999999999988643 3567788899999999998764
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.9e-21 Score=168.56 Aligned_cols=312 Identities=11% Similarity=-0.036 Sum_probs=258.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHH
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASL 101 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (343)
...+......+.+.|++++|...|+++.+.+ |+ ..+|..+..++...|++++|++.++++.+.+ +.+..++..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--ED---PVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHH
Confidence 4567778889999999999999999998876 33 6789999999999999999999999999875 3356789999
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcCCCC-----------------------------------------------------
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKGMLR----------------------------------------------------- 128 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------------------------------------- 128 (343)
..++.+.|++++|...|+++.+.+...
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 999999999999999999988765310
Q ss_pred -------------------------CHHHHHHHHHHHHh---cCcHhHHHHHHHHHHh-----c--CC------CCchhh
Q 044084 129 -------------------------DLEVFLKLVLMYIE---EGMVEKTLEVVESMKN-----A--EL------NISDCI 167 (343)
Q Consensus 129 -------------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~ 167 (343)
+...+..+...+.. .|++++|...|+++.+ . .+ +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 13333444444444 8999999999999887 3 11 123456
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHc
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 247 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (343)
+..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 7888899999999999999999999875 447888889999999999999999999998875 5577889999999999
Q ss_pred cCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh---------------HHHHHHHHHhcCCHHHHHHHH
Q 044084 248 TGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK---------------YTTVISAYNMAREFDMCVKFY 312 (343)
Q Consensus 248 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---------------~~~l~~~~~~~g~~~~a~~~~ 312 (343)
.|++++|...++++.+.. +.+...+..+...+...|++++|.. +..+...+...|++++|+..+
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999998863 2356788899999999999999987 778889999999999999999
Q ss_pred HHHHhCCCC-cc----HHHHHHHHHHHhc---ccccccC
Q 044084 313 NEFRMNGGV-ID----RAMAGIMVGVFSK---LSQIEEL 343 (343)
Q Consensus 313 ~~m~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~a 343 (343)
+++...... |+ ...+..+..++.+ .|++++|
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A 434 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH
Confidence 999775322 11 2378889999999 8988764
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=6e-20 Score=151.67 Aligned_cols=295 Identities=11% Similarity=0.045 Sum_probs=239.6
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHh
Q 044084 18 IVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSV 97 (343)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (343)
.+.+...+..+...+...|++++|.++|+++.+..... ...+..++..+...|++++|...++++.+... .+...
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 92 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH----ASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVS 92 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHH
Confidence 45677788899999999999999999999998765332 35677788888999999999999999988643 36778
Q ss_pred HHHHHHHHhccc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHh
Q 044084 98 YASLICSFASIA-EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFS 176 (343)
Q Consensus 98 ~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (343)
+..+...+...| ++++|...++++.+.... +...|..+...+...|++++|...|++..+... .+...+..+...+.
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 888999999999 999999999999987643 678899999999999999999999999988765 34566777999999
Q ss_pred cCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcC--------CCcChhhHHHHHHHHHcc
Q 044084 177 KRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG--------FDKCVVAYSSMVAMYGKT 248 (343)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 248 (343)
..|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. .+.+..++..+...+...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998874 4567888899999999999999999999988752 134467899999999999
Q ss_pred CChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHH
Q 044084 249 GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAG 328 (343)
Q Consensus 249 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 328 (343)
|++++|...+++..+... .+... +..+...+...|++++|.+.+++..+... .+...+.
T Consensus 250 g~~~~A~~~~~~a~~~~~-~~~~~-------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 308 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIP-QNAST-------------------YSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVT 308 (330)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHH-------------------HHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHH
T ss_pred cCHHHHHHHHHHHHhhCc-cchHH-------------------HHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHH
Confidence 999999999999987521 12333 34455666778888999999999887542 3566777
Q ss_pred HHHHHH-hcccccc
Q 044084 329 IMVGVF-SKLSQIE 341 (343)
Q Consensus 329 ~l~~~~-~~~g~~~ 341 (343)
.+..++ ...|+.+
T Consensus 309 ~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 309 MLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHTTTTC--
T ss_pred HHHHHHHHHhCchh
Confidence 788877 5666543
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.1e-19 Score=149.98 Aligned_cols=275 Identities=8% Similarity=-0.048 Sum_probs=232.8
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccC-cHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSG-RAFEIL 80 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~ 80 (343)
++++|+++|+++.+..+ .+...+..++..+.+.|++++|..+++++.+... .+..+|..+...+...| ++++|.
T Consensus 37 ~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~A~ 111 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP----SNPVSWFAVGCYYLMVGHKNEHAR 111 (330)
T ss_dssp CHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TSTHHHHHHHHHHHHSCSCHHHHH
T ss_pred CHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHhhhhHHHHH
Confidence 67899999999998754 4667788888999999999999999999988653 23578999999999999 999999
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 81 KFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
+.|++...... .+...|..+...+...|++++|...++++.+.... +...+..+...|...|++++|.+.+++..+..
T Consensus 112 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 112 RYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp HHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999988642 35778899999999999999999999999987654 56777789999999999999999999998876
Q ss_pred CCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC--------CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 044084 161 LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG--------CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFD 232 (343)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (343)
+ .+...+..+...+...|++++|...+++..+.. .+....++..+..++...|++++|...++...+.. +
T Consensus 190 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~ 267 (330)
T 3hym_B 190 P-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-P 267 (330)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred C-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-c
Confidence 5 567789999999999999999999999988742 13335688899999999999999999999999875 4
Q ss_pred cChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHH-hcccCh
Q 044084 233 KCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMH-GRAKNL 286 (343)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~ 286 (343)
.+...+..+...+...|++++|...+++..+.. +.+...+..+..++ ...|+.
T Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 578899999999999999999999999998763 23567777777777 445544
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.2e-19 Score=149.93 Aligned_cols=261 Identities=9% Similarity=0.029 Sum_probs=151.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHH
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASL 101 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (343)
+..+..+...+.+.|++++|...|+++.+.. |.+..++..+...+...|++++|+..++++.+... .+...+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 77 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD----PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHH
Confidence 3445556666666666666666666665543 22245666666666666666666666666665431 244556666
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHhcCcHhHHHHHHHHHHhcCCCCchhh
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKGML--RDLEVFLKL------------VLMYIEEGMVEKTLEVVESMKNAELNISDCI 167 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 167 (343)
...+...|++++|...++++.+..+. .+...+..+ ...+...|++++|.+.++++.+..+ .+...
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 156 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAEL 156 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHH
Confidence 66666666666666666666654320 133333333 4566666666666666666665544 34455
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHH--------
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYS-------- 239 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------- 239 (343)
+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence 6666666666666666666666666553 3345566666666666666666666666666543 22222222
Q ss_pred ----HHHHHHHccCChHHHHHHHHHHhhCCCCchH----HHHHHHHHHHhcccChhHHHh
Q 044084 240 ----SMVAMYGKTGRIRDAMRLVAKMKPKGCEPNV----WIYNSLMDMHGRAKNLRQLEK 291 (343)
Q Consensus 240 ----~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~ 291 (343)
.+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|..
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 2244566666666666666666654211 11 223345556666666666665
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=2.6e-20 Score=156.33 Aligned_cols=280 Identities=10% Similarity=0.044 Sum_probs=209.0
Q ss_pred hhhHHH-HHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHH
Q 044084 3 SQSKLH-YYEKMKSAGI---VLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFE 78 (343)
Q Consensus 3 ~~~A~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 78 (343)
+++|+. .|++..+... ..+...+..+...+.+.|++++|...|+++.+.. |.+..+|..+...+...|++++
T Consensus 41 ~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 41 YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD----PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp -----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555 5554443321 1135668888899999999999999999988765 3336788899999999999999
Q ss_pred HHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhc
Q 044084 79 ILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLK---------------LVLMYIEE 143 (343)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~ 143 (343)
|++.|+++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 999999988874 336778888889999999999999999998886543 2222211 13333488
Q ss_pred CcHhHHHHHHHHHHhcCCCC-chhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHH
Q 044084 144 GMVEKTLEVVESMKNAELNI-SDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKV 222 (343)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 222 (343)
|++++|...|+++.+..+.. +..++..+...+...|++++|...++++.... +.+..++..+...+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988776432 46778888999999999999999999988763 34567888889999999999999999
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCc----------hHHHHHHHHHHHhcccChhHHH
Q 044084 223 FIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEP----------NVWIYNSLMDMHGRAKNLRQLE 290 (343)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----------~~~~~~~l~~~~~~~~~~~~a~ 290 (343)
++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+..... ...+|..+..+|...|+.++|.
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99988875 4567788899999999999999999998887641110 1456666666666666665554
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=3.1e-20 Score=155.81 Aligned_cols=237 Identities=9% Similarity=0.014 Sum_probs=192.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
+...+..+...+.+.|++++|...|+++.+.. |.+..+|..+...+...|++++|++.|++..+.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD----PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 45568888999999999999999999998765 3336889999999999999999999999998864 235778999
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC-CchhhHHH
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLR---------DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN-ISDCISCV 170 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 170 (343)
+...+...|++++|...++++.+..+.. ....+..+...+...|++++|+..|+++.+..+. ++..++..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 9999999999999999999998754220 1233445678899999999999999999887652 15678889
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCC
Q 044084 171 IVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 250 (343)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (343)
+...+...|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...|+...+.. +.+..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 9999999999999999999998874 4567889999999999999999999999998875 4458889999999999999
Q ss_pred hHHHHHHHHHHhhC
Q 044084 251 IRDAMRLVAKMKPK 264 (343)
Q Consensus 251 ~~~a~~~~~~m~~~ 264 (343)
+++|...|+++.+.
T Consensus 297 ~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 297 YREAVSNFLTALSL 310 (365)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=5.3e-20 Score=154.48 Aligned_cols=288 Identities=8% Similarity=-0.001 Sum_probs=216.4
Q ss_pred HHhcCCHHHHHH-HHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC
Q 044084 32 FYKIGDSEKVAA-LFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE 110 (343)
Q Consensus 32 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (343)
+.-.|++++|.. .|++...............+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445578888888 77765443221111123567888999999999999999999999874 3367788999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHH---------------HHHHH
Q 044084 111 VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCV---------------IVNGF 175 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 175 (343)
+++|...++++.+..+. +..++..+...|...|++++|.+.++++....+.. ...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999988643 78999999999999999999999999998876532 222221 23334
Q ss_pred hcCCcHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHH
Q 044084 176 SKRRAYWAAVKVYEQLISQGCIP-GQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDA 254 (343)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (343)
...|++++|...++++.+..... +..++..+...|...|++++|...++.+.+.. +.+..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998874221 47888999999999999999999999998875 45678999999999999999999
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc----------cH
Q 044084 255 MRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVI----------DR 324 (343)
Q Consensus 255 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~ 324 (343)
...|+++.+.. +.+..++ ..+...|.+.|++++|...|++..+..... ..
T Consensus 271 ~~~~~~al~~~-~~~~~~~-------------------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSR-------------------YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHH-------------------HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHhC-CCcHHHH-------------------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 99999998752 2233443 344555667778888888888886643221 15
Q ss_pred HHHHHHHHHHhcccccccC
Q 044084 325 AMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 325 ~~~~~l~~~~~~~g~~~~a 343 (343)
.+|..+..+|.+.|++++|
T Consensus 331 ~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHHhCChHhH
Confidence 7799999999999999874
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=3.6e-18 Score=150.63 Aligned_cols=312 Identities=9% Similarity=0.018 Sum_probs=241.8
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC------------------------
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTP------------------------ 57 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------ 57 (343)
++++|++.|+++.+.++ .+..++..+..++...|++++|...|+.+ ........
T Consensus 74 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 151 (537)
T 3fp2_A 74 DLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLS 151 (537)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999998764 47788999999999999999999999643 21111100
Q ss_pred ----------------------------------------chHHHHHHHHHHhhcc--------CcHHHHHHHHHHHHhc
Q 044084 58 ----------------------------------------SSTHMYKILCDSLGKS--------GRAFEILKFFRDMKEK 89 (343)
Q Consensus 58 ----------------------------------------~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~~~~ 89 (343)
........+...+... |++++|+.+++++.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp -------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0000222222222222 4788999999999876
Q ss_pred CCCCC-------hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC
Q 044084 90 GILED-------PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN 162 (343)
Q Consensus 90 ~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (343)
... + ..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|.+.|+++.+..+
T Consensus 232 ~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 307 (537)
T 3fp2_A 232 NTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP- 307 (537)
T ss_dssp -CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-
T ss_pred CCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-
Confidence 422 2 2246666778888999999999999999875 5588899999999999999999999999988765
Q ss_pred CchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHH
Q 044084 163 ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242 (343)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (343)
.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 385 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFA 385 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 466789999999999999999999999999874 3346788889999999999999999999999875 55678899999
Q ss_pred HHHHccCChHHHHHHHHHHhhCC-----CCchHHHHHHHHHHHhcc----------cChhHHHh---------------H
Q 044084 243 AMYGKTGRIRDAMRLVAKMKPKG-----CEPNVWIYNSLMDMHGRA----------KNLRQLEK---------------Y 292 (343)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~----------~~~~~a~~---------------~ 292 (343)
..+...|++++|...|+++.+.. .......+......+... |++++|.. +
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 465 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999987642 111222344455667777 88888877 8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044084 293 TTVISAYNMAREFDMCVKFYNEFRMNGGV 321 (343)
Q Consensus 293 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 321 (343)
..+...|...|++++|.+.|++..+....
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999886543
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=3.5e-19 Score=146.84 Aligned_cols=235 Identities=7% Similarity=-0.046 Sum_probs=197.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
+...+..+...+.+.|++++|..+|+++.+... .+..+|..+...+...|++++|.+.++++.+.. +.+..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP----EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH
Confidence 456678888999999999999999999987653 336889999999999999999999999998874 336778888
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCcHhHHHHHHHHHHhcCCCCch
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKL--------------VL-MYIEEGMVEKTLEVVESMKNAELNISD 165 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (343)
+...+...|++++|...++++.+.... +...+..+ .. .+...|++++|...++++.+..+ .+.
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 172 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDA 172 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCH
Confidence 999999999999999999999986543 33333333 22 37788999999999999988765 467
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 044084 166 CISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245 (343)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (343)
..+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++...+.. +.+..++..+...|
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 789999999999999999999999998874 4457788999999999999999999999998875 45678899999999
Q ss_pred HccCChHHHHHHHHHHhhC
Q 044084 246 GKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 246 ~~~~~~~~a~~~~~~m~~~ 264 (343)
...|++++|...++++.+.
T Consensus 251 ~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 9999999999999998865
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=1.2e-18 Score=143.70 Aligned_cols=253 Identities=10% Similarity=-0.016 Sum_probs=211.9
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+.+|+++.+..+ .+...+..+...+.+.|++++|...|+++.+.. |.+..++..+...+...|++++|++
T Consensus 36 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~ 110 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALAVSHTNEHNANAALA 110 (327)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 67899999999988754 477889999999999999999999999998764 3336789999999999999999999
Q ss_pred HHHHHHhcCCCCChHhHHHH--------------HH-HHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 044084 82 FFRDMKEKGILEDPSVYASL--------------IC-SFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMV 146 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (343)
.++++...... +...+..+ .. .+...|++++|...++++.+.... +..++..+...+...|++
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 188 (327)
T 3cv0_A 111 SLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNY 188 (327)
T ss_dssp HHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccH
Confidence 99999886422 33333333 22 377889999999999999987654 789999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHH
Q 044084 147 EKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 226 (343)
++|.+.++++.+..+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++..
T Consensus 189 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 189 DSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999988765 466789999999999999999999999998874 345778889999999999999999999998
Q ss_pred HHcCCCc-----------ChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 227 QQKGFDK-----------CVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 227 ~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
.+..... +..+|..+..++...|++++|..++++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8764221 477899999999999999999999876553
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=6e-19 Score=147.96 Aligned_cols=252 Identities=9% Similarity=0.030 Sum_probs=206.2
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+..|+++.+..+ .+..++..+...+.+.|++++|...|+++.+.. |.+..+|..+...+...|++++|++
T Consensus 80 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~ 154 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ----PNNLKALMALAVSYTNTSHQQDACE 154 (365)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHccccHHHHHH
Confidence 67899999999998754 478899999999999999999999999998765 3336889999999999999999999
Q ss_pred HHHHHHhcCCCC---------ChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHhHHHH
Q 044084 82 FFRDMKEKGILE---------DPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR-DLEVFLKLVLMYIEEGMVEKTLE 151 (343)
Q Consensus 82 ~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 151 (343)
.|+++.+..... ....+..+...+...|++++|...++++.+..+.. +..++..+...|...|++++|+.
T Consensus 155 ~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 234 (365)
T 4eqf_A 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234 (365)
T ss_dssp HHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999998753110 11223345788899999999999999999876432 68899999999999999999999
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 044084 152 VVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGF 231 (343)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 231 (343)
.|++..+..+ .+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+...+...
T Consensus 235 ~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 235 AFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 9999988765 567789999999999999999999999999874 34578899999999999999999999999887531
Q ss_pred C-----------cChhhHHHHHHHHHccCChHHHHHHHHH
Q 044084 232 D-----------KCVVAYSSMVAMYGKTGRIRDAMRLVAK 260 (343)
Q Consensus 232 ~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (343)
. .+..+|..+..++...|+.+.+..+..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 313 KSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred ccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 1 1367899999999999999988887765
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=3.5e-18 Score=138.24 Aligned_cols=246 Identities=11% Similarity=0.093 Sum_probs=180.1
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
+++.|+..++......+.+.......+.++|...|+++.|...++. .+++...++..+...+...++.++|++
T Consensus 14 ~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 4566777776655443222234556677888888888888875533 134456778888888888888888888
Q ss_pred HHHHHHhcCCCCC-hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 82 FFRDMKEKGILED-PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
.++++...+..|+ ...+..+...+...|++++|...+++ +.+...+..++..+.+.|++++|.+.|+++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 8888887665454 44556666788888888888888877 3577888888888888888889988888888765
Q ss_pred CCCchhh---HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhh
Q 044084 161 LNISDCI---SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA 237 (343)
Q Consensus 161 ~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (343)
|+... ...++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|+..|++..+.. +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 33211 1223344455688888888888888773 5677788888888888888888888888888775 456778
Q ss_pred HHHHHHHHHccCChHH-HHHHHHHHhhC
Q 044084 238 YSSMVAMYGKTGRIRD-AMRLVAKMKPK 264 (343)
Q Consensus 238 ~~~l~~~~~~~~~~~~-a~~~~~~m~~~ 264 (343)
+..++..+...|+.++ +.++++++.+.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8888888888888865 56788887765
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=8e-21 Score=169.93 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHH---hcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 044084 130 LEVFLKLVLMYIEEGMVEKTLEVVESMK---NAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASI 206 (343)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 206 (343)
..+|++||++|++.|++++|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 5678888888888888888888887765 3467788888888888888888888888888888888888888888888
Q ss_pred HHHHHccCCh-hHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCch------HHHHHHHHHH
Q 044084 207 INAYCRIGLY-SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPN------VWIYNSLMDM 279 (343)
Q Consensus 207 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~~ 279 (343)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+ +.+++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 8888888874 6788888888888888888888888765544 3344444444 3344443 3444455555
Q ss_pred HhcccC
Q 044084 280 HGRAKN 285 (343)
Q Consensus 280 ~~~~~~ 285 (343)
|.+.+.
T Consensus 282 ~s~d~~ 287 (1134)
T 3spa_A 282 YAKDGR 287 (1134)
T ss_dssp HCCCSC
T ss_pred HccCCC
Confidence 655543
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=2.5e-18 Score=139.15 Aligned_cols=253 Identities=11% Similarity=0.036 Sum_probs=198.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhc
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSS-THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFAS 107 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (343)
++.....|++..|+..++...... |.+ ......+.++|...|+++.|+..++. .-+|+..++..+...+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~----p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS----PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS----HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC----chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcC
Confidence 455667899999999887653322 222 34556778999999999999987654 235677788889999999
Q ss_pred ccCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHH
Q 044084 108 IAEVKVAEELFKEAEEKGMLR-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK 186 (343)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (343)
.++.+.|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999876444 677788888999999999999999988 3667789999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhH---HHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 187 VYEQLISQGCIPGQVTY---ASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 187 ~~~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999874 553211 123344455699999999999999884 67889999999999999999999999999987
Q ss_pred CCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 044084 264 KGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDM-CVKFYNEFRMN 318 (343)
Q Consensus 264 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 318 (343)
.. +-+..++..++..+.. .|+.++ +.++++++.+.
T Consensus 229 ~~-p~~~~~l~~l~~~~~~-------------------~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 229 KD-SGHPETLINLVVLSQH-------------------LGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HC-TTCHHHHHHHHHHHHH-------------------TTCCHHHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHH-------------------cCCCHHHHHHHHHHHHHh
Confidence 63 2255666666555544 444443 56777777764
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=9.8e-21 Score=169.35 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=122.2
Q ss_pred hHhHHHHHHHHhcccCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHH
Q 044084 95 PSVYASLICSFASIAEVKVAEELFKEAE---EKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVI 171 (343)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (343)
..||+++|++|++.|++++|.++|.+|. +.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4588999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCc-HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcC------hhhHHHHHHH
Q 044084 172 VNGFSKRRA-YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC------VVAYSSMVAM 244 (343)
Q Consensus 172 ~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 244 (343)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+.+- .+..+++ ..++.|+ +.+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v----L~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV----LKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH----HHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH----HHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999987 57899999999999999999999998876554322 2222222 2234443 4444555555
Q ss_pred HHccC
Q 044084 245 YGKTG 249 (343)
Q Consensus 245 ~~~~~ 249 (343)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 55543
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=7.8e-16 Score=134.17 Aligned_cols=311 Identities=12% Similarity=0.089 Sum_probs=237.3
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhc----c
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYK----IGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK----S 73 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 73 (343)
++++|+..|++..+.| +...+..|...|.. .+++++|.+.|++..+.+. ...+..|...|.. .
T Consensus 58 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL------PQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCC
Confidence 5778889998888764 45677788888888 8899999999998877652 4567778888877 7
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhc----ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCc
Q 044084 74 GRAFEILKFFRDMKEKGILEDPSVYASLICSFAS----IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE----EGM 145 (343)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 145 (343)
+++++|+++|++..+.| +...+..+...|.. .++.++|...|++..+.| +...+..|...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 88999999999888765 55667777777776 778999999999888864 67888888888887 788
Q ss_pred HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc----CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCChh
Q 044084 146 VEKTLEVVESMKNAELNISDCISCVIVNGFSK----RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR----IGLYS 217 (343)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~ 217 (343)
.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++++
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 999999999888765 33456667777765 788999999999888764 34556666666766 78899
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHcc-----CChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhccc---ChhHH
Q 044084 218 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT-----GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK---NLRQL 289 (343)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a 289 (343)
+|...|+...+.+ +...+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHH
Confidence 9999999888765 456677777777776 88999999999988864 3455666666666545 55666
Q ss_pred Hh-------------HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc----cccccc
Q 044084 290 EK-------------YTTVISAYNM----AREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSK----LSQIEE 342 (343)
Q Consensus 290 ~~-------------~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 342 (343)
.. +..+...|.. .+++++|++.|++..+.| ++..+..|...|.+ .+++++
T Consensus 351 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 351 VEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 55 6677777777 789999999999988875 45566667777776 555543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=4.8e-19 Score=146.96 Aligned_cols=266 Identities=12% Similarity=0.173 Sum_probs=125.4
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
+.++|.++++++. ++.+|..++.++.+.|++++|.+.|.+. ++ ..+|..++.++...|++++|+.
T Consensus 18 ~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D---~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 18 NLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DD---PSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CC---HHHHHHHHHHHHhCCCHHHHHH
Confidence 4677888887772 3358999999999999999999999653 22 3579999999999999999999
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL 161 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (343)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777664 4567889999999999999999998885 267789999999999999999999999977
Q ss_pred CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHH
Q 044084 162 NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241 (343)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (343)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 26999999999999999999999988 37789999999999999999996655432 2334445578
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhc--ccChhHHHh--------------------HHHHHHHH
Q 044084 242 VAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGR--AKNLRQLEK--------------------YTTVISAY 299 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~--------------------~~~l~~~~ 299 (343)
+..|.+.|++++|..+++...... +-....|+-|.-+|++ -++..+..+ |..++..|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998653 3345556655555544 333444333 88899999
Q ss_pred HhcCCHHHHHHHH
Q 044084 300 NMAREFDMCVKFY 312 (343)
Q Consensus 300 ~~~g~~~~a~~~~ 312 (343)
...++++.|....
T Consensus 293 ~~~~e~d~A~~tm 305 (449)
T 1b89_A 293 DKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhchHHHHHHHH
Confidence 9999999887643
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.4e-14 Score=126.26 Aligned_cols=293 Identities=12% Similarity=0.096 Sum_probs=243.4
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhc----c
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYK----IGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK----S 73 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 73 (343)
++++|+..|++..+.| +...+..|...|.. .+++++|...|++..+.+. ..++..|...|.. .
T Consensus 94 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 94 DYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR------DSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCC
Confidence 6789999999999875 56677788888888 7899999999999988753 4678888888876 7
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhc----ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCc
Q 044084 74 GRAFEILKFFRDMKEKGILEDPSVYASLICSFAS----IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE----EGM 145 (343)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 145 (343)
+++++|+++|++..+.| +...+..+...|.. .++.++|...|++..+.| +...+..+...|.. .++
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999998875 67778888888887 899999999999999875 67788888888886 889
Q ss_pred HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc----CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-----CCh
Q 044084 146 VEKTLEVVESMKNAELNISDCISCVIVNGFSK----RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI-----GLY 216 (343)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-----~~~ 216 (343)
+++|..+|++..+.+. ...+..+...|.. .+++++|...|++..+.| +...+..+...|... +++
T Consensus 239 ~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 9999999999987653 3456666667766 899999999999998765 445667777777776 899
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHHHHccC---ChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhc----ccChhHH
Q 044084 217 SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG---RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGR----AKNLRQL 289 (343)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a 289 (343)
++|...++...+.+ +...+..+...|...| +.++|.++|++..+.| +...+..+...|.. .++.++|
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999999876 4567778888887766 7899999999999874 56777888888887 7888888
Q ss_pred Hh-------------HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 044084 290 EK-------------YTTVISAYNM----AREFDMCVKFYNEFRMNGGV 321 (343)
Q Consensus 290 ~~-------------~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 321 (343)
.. +..+...|.. .+++++|...|++..+.+..
T Consensus 387 ~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 387 AIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 77 6777888887 89999999999999988754
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2e-16 Score=125.71 Aligned_cols=226 Identities=13% Similarity=0.106 Sum_probs=186.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCC--CC----h
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGIL--ED----P 95 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~ 95 (343)
...+..+...+...|++++|...|+++.+.. .+ ..+|..+...+...|++++|++.+++..+.... ++ .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 4567888889999999999999999988776 33 478889999999999999999999998775311 12 4
Q ss_pred HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 044084 96 SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGF 175 (343)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (343)
.++..+...+...|++++|...+++..+.. |+. ..+...|++++|...++++....+ .+...+..+...+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHH
Confidence 678888889999999999999999998865 443 346667889999999999887654 3556788888899
Q ss_pred hcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHH
Q 044084 176 SKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAM 255 (343)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (343)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999998874 4467788888999999999999999999998875 456788889999999999999999
Q ss_pred HHHHHHhhC
Q 044084 256 RLVAKMKPK 264 (343)
Q Consensus 256 ~~~~~m~~~ 264 (343)
..+++..+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988765
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.6e-15 Score=131.53 Aligned_cols=319 Identities=10% Similarity=-0.006 Sum_probs=204.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc-----
Q 044084 20 LDSGCYCQIMEAFYKIGDSEKVAALFLECESR-----KLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK----- 89 (343)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 89 (343)
.....|+.|...+...|++++|++.|++..+. +...++....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999886442 22233444688999999999999999999999887652
Q ss_pred C-CCC-ChHhHHHHHHHHhc--ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCcHhHHHHHHHHHHhcCCC
Q 044084 90 G-ILE-DPSVYASLICSFAS--IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY---IEEGMVEKTLEVVESMKNAELN 162 (343)
Q Consensus 90 ~-~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~ 162 (343)
+ ..+ ...++.....++.. .+++++|...|++..+..+. ++..+..+...+ ...++.++|++.+++..+.++
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 111 23455555544444 45789999999999887643 566666655553 345677888888888776654
Q ss_pred CchhhHHHHHHHHh----cCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhH
Q 044084 163 ISDCISCVIVNGFS----KRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAY 238 (343)
Q Consensus 163 ~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (343)
.+..++..+...+. ..+++++|.+.+++..... +.+..++..+...|...|++++|...++...+.. |.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 34444544444333 3466778888888877664 3455677778888888888888888888877764 3344555
Q ss_pred HHHHHHHHcc-------------------CChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh--------
Q 044084 239 SSMVAMYGKT-------------------GRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK-------- 291 (343)
Q Consensus 239 ~~l~~~~~~~-------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-------- 291 (343)
..+..+|... +..+.|...+++..+.. +.+..++..+...|...|++++|..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 5555444321 12345555565555432 2233455666666777777776665
Q ss_pred ----------HHHHHH-HHHhcCCHHHHHHHHHHHHhCCC-----------------------CccHHHHHHHHHHHhcc
Q 044084 292 ----------YTTVIS-AYNMAREFDMCVKFYNEFRMNGG-----------------------VIDRAMAGIMVGVFSKL 337 (343)
Q Consensus 292 ----------~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~-----------------------~p~~~~~~~l~~~~~~~ 337 (343)
+..+.. ...+.|++++|+..|++..+... +.+..+|..+..+|...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~ 443 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELN 443 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 111111 22356777777777766654321 23456789999999999
Q ss_pred cccccC
Q 044084 338 SQIEEL 343 (343)
Q Consensus 338 g~~~~a 343 (343)
|++++|
T Consensus 444 g~~~~A 449 (472)
T 4g1t_A 444 EKMQQA 449 (472)
T ss_dssp HHCC--
T ss_pred CCHHHH
Confidence 999876
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=1.1e-16 Score=123.87 Aligned_cols=209 Identities=12% Similarity=0.080 Sum_probs=94.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHH
Q 044084 20 LDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYA 99 (343)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (343)
++...+..+...+.+.|++++|...|++..+.. |.+...|..+...+.+.|++++|+..|++..+... .+...+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~ 77 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN----PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYM 77 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 444455555555555555555555555554433 22234555555555555555555555555554421 1333444
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR 179 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (343)
.+..++...+ ... .. .+...|++++|+..|++..+..+ -+...+..+...+...|
T Consensus 78 ~lg~~~~~~~-------------~~~--~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 78 VLSEAYVALY-------------RQA--ED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHHHH-------------HTC--SS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh-------------hhh--hh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcC
Confidence 4444444440 000 00 00000555555555555554443 23344555555555555
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHH
Q 044084 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVA 259 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (343)
++++|...|++..+.. .+...+..+..+|...|++++|...|+...+.. |.+...+..+...+...|++++|...++
T Consensus 133 ~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 133 ERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred ChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5555555555555544 444455555555555555555555555555543 3344555555555555566655555555
Q ss_pred HH
Q 044084 260 KM 261 (343)
Q Consensus 260 ~m 261 (343)
+.
T Consensus 210 ~~ 211 (217)
T 2pl2_A 210 LE 211 (217)
T ss_dssp --
T ss_pred HH
Confidence 44
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=1.4e-16 Score=123.27 Aligned_cols=182 Identities=13% Similarity=0.066 Sum_probs=134.8
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhcc--------
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKS-------- 73 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 73 (343)
++++|+..|++..+..+ .+...+..+...+.+.|++++|...|++..+.+ |.+...+..+...+...
T Consensus 20 ~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~~~~~~~~~ 94 (217)
T 2pl2_A 20 RYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART----PRYLGGYMVLSEAYVALYRQAEDRE 94 (217)
T ss_dssp CHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHhhhhhhhhc
Confidence 57899999999998764 478889999999999999999999999998765 33467899999999988
Q ss_pred ---CcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHH
Q 044084 74 ---GRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTL 150 (343)
Q Consensus 74 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (343)
|++++|+..|++..+.... +...+..+..++...|++++|...|++..+.. .++..+..+...|...|++++|+
T Consensus 95 ~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~ 171 (217)
T 2pl2_A 95 RGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEAL 171 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888776322 45677777778888888888888888888776 57778888888888888888888
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044084 151 EVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192 (343)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (343)
..|++..+..+ .+...+..+...+...|++++|...+++..
T Consensus 172 ~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 172 AQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888777654 455667777777888888888887777654
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.4e-18 Score=142.85 Aligned_cols=187 Identities=13% Similarity=0.176 Sum_probs=51.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHH
Q 044084 34 KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKV 113 (343)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (343)
+.|++++|.+.++++ +. ..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++
T Consensus 15 ~~~~ld~A~~fae~~------~~---~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NE---PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CC---hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHH
Confidence 566677777777665 21 246777777777777777777777542 355667777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 114 AEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 114 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
|...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 77766655553 2346667777777777777777766663 145556777777777777777777777754
Q ss_pred cCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHH
Q 044084 194 QGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVA 259 (343)
Q Consensus 194 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (343)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|.....
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 35667777777777777777777665 246677777777777777777744433
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.76 E-value=6e-17 Score=130.11 Aligned_cols=226 Identities=11% Similarity=-0.046 Sum_probs=173.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHH
Q 044084 33 YKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVK 112 (343)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (343)
...|++++|...|+++.+.....+|....+|..+...+...|++++|+..|++..+... .+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 34578899999999888764433344567888889999999999999999999888642 36778888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044084 113 VAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192 (343)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (343)
+|...++++.+..+. +..++..+...|...|++++|...|+++.+..+ +.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998887543 678888899999999999999999999887653 33333444445566789999999998877
Q ss_pred HcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC---cChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 193 SQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFD---KCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 193 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
... +++... ..++..+...++.++|...+....+.... .+..++..+...|...|++++|...|++..+.
T Consensus 172 ~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 763 333333 34667777888888888888877654311 12577888899999999999999999999876
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=7.2e-16 Score=122.45 Aligned_cols=226 Identities=17% Similarity=0.100 Sum_probs=186.4
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCC--C----HHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR--D----LEVF 133 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 133 (343)
...|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+++..+..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678899999999999999999999999887 688899999999999999999999999988754321 2 6889
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 044084 134 LKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI 213 (343)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 213 (343)
..+...+...|++++|...|++...... +. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHR--TA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--CH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCc--hh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 9999999999999999999999988653 32 34666789999999999998863 33456788888999999
Q ss_pred CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHH
Q 044084 214 GLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYT 293 (343)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 293 (343)
|++++|...++...+.. +.+..++..+...|...|++++|...+++..+.. +.+...+..
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~------------------ 212 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIR------------------ 212 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH------------------
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHH------------------
Confidence 99999999999999875 5578889999999999999999999999998753 223444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 044084 294 TVISAYNMAREFDMCVKFYNEFRMN 318 (343)
Q Consensus 294 ~l~~~~~~~g~~~~a~~~~~~m~~~ 318 (343)
+...+...|++++|...+++..+.
T Consensus 213 -l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 213 -KATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 444555667777777777777654
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=7.1e-15 Score=127.51 Aligned_cols=320 Identities=10% Similarity=-0.012 Sum_probs=198.0
Q ss_pred chhhHHHHHHHHHhC-----C--CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCCchHHHHHHHHHH
Q 044084 2 NSQSKLHYYEKMKSA-----G--IVL-DSGCYCQIMEAFYKIGDSEKVAALFLECESR----KLDLTPSSTHMYKILCDS 69 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~li~~ 69 (343)
+.++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+. .....+....++..+..+
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence 467788888776541 1 122 3567899999999999999999999887542 111122234667766665
Q ss_pred hhc--cCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHH---hcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 044084 70 LGK--SGRAFEILKFFRDMKEKGILEDPSVYASLICSF---ASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE-- 142 (343)
Q Consensus 70 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 142 (343)
+.. .+++++|++.|++..+.... ++..+..+..++ ...++.++|.+.+++..+..+. +..++..+...+..
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~ 223 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMR 223 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC
T ss_pred HHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHH
Confidence 554 45799999999999886422 344554444443 3446667888888888876543 56666666555544
Q ss_pred --cCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-------
Q 044084 143 --EGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI------- 213 (343)
Q Consensus 143 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~------- 213 (343)
.+++++|.+.+++.....+ .+..++..+...|...|++++|...+++..+.. +-+..++..+..+|...
T Consensus 224 ~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 224 EEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp ------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhH
Confidence 4567888888888877665 456678888888899999999999998888763 23344555554444321
Q ss_pred ------------CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHH--HHHHHHH-
Q 044084 214 ------------GLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVW--IYNSLMD- 278 (343)
Q Consensus 214 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~- 278 (343)
+..+.|...++...+.. +.+..++..+...|...|++++|...|++..+....|... .+..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~ 380 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF 380 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 23556677777766654 4456677788888888888888888888887764333321 1222222
Q ss_pred HHhcccChhHHHh---------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044084 279 MHGRAKNLRQLEK---------------------------------------YTTVISAYNMAREFDMCVKFYNEFRMNG 319 (343)
Q Consensus 279 ~~~~~~~~~~a~~---------------------------------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 319 (343)
.....|+.++|.. |..+...|...|++++|++.|++.++.|
T Consensus 381 ~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 381 QLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2335566665543 7788899999999999999999998865
Q ss_pred C-CccHHH
Q 044084 320 G-VIDRAM 326 (343)
Q Consensus 320 ~-~p~~~~ 326 (343)
. .|+..+
T Consensus 461 ~~~p~a~~ 468 (472)
T 4g1t_A 461 SLIPSASS 468 (472)
T ss_dssp --------
T ss_pred CCCCcHhh
Confidence 3 344443
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=2.2e-15 Score=120.79 Aligned_cols=236 Identities=9% Similarity=0.036 Sum_probs=189.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC--hHhHH
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILED--PSVYA 99 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 99 (343)
...+......+...|++++|...|+++.+.... +...+..+...+...|++++|++.+++..+.+..|+ ...|.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN----SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 445667788899999999999999999886533 235788899999999999999999999988432222 23478
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR 179 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (343)
.+...+...|++++|...+++..+..+. +..++..+...|...|++++|+..|++..+..+ .+...+..+...+...+
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHH
Confidence 8899999999999999999999997654 678999999999999999999999999987754 45566777773444456
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC---hhHHHHHHHHHHHcC-CCcC------hhhHHHHHHHHHccC
Q 044084 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGL---YSKAEKVFIEMQQKG-FDKC------VVAYSSMVAMYGKTG 249 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~ 249 (343)
++++|.+.|++..+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+...|...|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 9999999999999874 3346677778888888888 888999998887642 1133 257888999999999
Q ss_pred ChHHHHHHHHHHhhC
Q 044084 250 RIRDAMRLVAKMKPK 264 (343)
Q Consensus 250 ~~~~a~~~~~~m~~~ 264 (343)
++++|...|++..+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999876
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=2.4e-15 Score=119.15 Aligned_cols=201 Identities=12% Similarity=0.022 Sum_probs=160.0
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4667778888888888888888888887764 235677788888888888888998888888877543 67888888888
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCC-chhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhH
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNI-SDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSK 218 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 218 (343)
|...|++++|.+.++++...+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888999999999988887732223 45567778888888899999999998888764 3456777888888888999999
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 219 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999998887764 456677888888888899999999999888775
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=5.5e-15 Score=118.58 Aligned_cols=248 Identities=13% Similarity=0.001 Sum_probs=191.6
Q ss_pred hhccCcHHHHHHHHHHHHhcCCC---CChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 044084 70 LGKSGRAFEILKFFRDMKEKGIL---EDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMV 146 (343)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (343)
....|++++|++.|+++.+.... .+..++..+...+...|++++|...++++.+..+. +..++..+...|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 44568999999999999886321 14567888899999999999999999999997653 789999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHH
Q 044084 147 EKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEM 226 (343)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 226 (343)
++|...|++..+..+ .+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+...
T Consensus 94 ~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999988765 45678999999999999999999999999987 355555555556667789999999999888
Q ss_pred HHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHH
Q 044084 227 QQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFD 306 (343)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~ 306 (343)
.... +++...+ .++..+...++.++|...+++..+. .|+... ..+..+..+...|...|+++
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~--------------~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAE--------------HLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHH--------------HHHHHHHHHHHHHHHTTCHH
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccc--------------cccHHHHHHHHHHHHcCCHH
Confidence 8764 4444444 4777788888999999999998865 222110 00111555677788889999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 307 MCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 307 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
+|...|++..+.. |+. +.....++...|++++|
T Consensus 233 ~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 233 SATALFKLAVANN--VHN--FVEHRYALLELSLLGQD 265 (275)
T ss_dssp HHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhh
Confidence 9999999998864 422 22235566667776654
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.73 E-value=5.5e-15 Score=114.75 Aligned_cols=201 Identities=8% Similarity=-0.042 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
...|..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 4555566666666666666666666665542 223455555666666666666666666666655432 55566666666
Q ss_pred HHhc-CcHhHHHHHHHHHHhcCCCC-chhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChh
Q 044084 140 YIEE-GMVEKTLEVVESMKNAELNI-SDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYS 217 (343)
Q Consensus 140 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 217 (343)
+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666666521112 23455566666666666666666666666553 223555666666666677777
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 218 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
+|...++...+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777776666653113455566666666667777777776666654
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=3.1e-14 Score=114.26 Aligned_cols=224 Identities=13% Similarity=0.004 Sum_probs=190.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhc----cCcHHHHHHHHHHHHhcCCCCChH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGK----SGRAFEILKFFRDMKEKGILEDPS 96 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 96 (343)
+..++..+...+...|++++|...|++..+.+ + ..++..+...+.. .+++++|++.|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~--~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----E--NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----C--HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 56678888889999999999999999988732 1 4678888888888 999999999999998875 677
Q ss_pred hHHHHHHHHhc----ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhcCCCCchhhH
Q 044084 97 VYASLICSFAS----IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE----EGMVEKTLEVVESMKNAELNISDCIS 168 (343)
Q Consensus 97 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (343)
.+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 88888888888 999999999999998875 77889999999999 999999999999988875 34567
Q ss_pred HHHHHHHhc----CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCcChhhHHH
Q 044084 169 CVIVNGFSK----RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR----IGLYSKAEKVFIEMQQKGFDKCVVAYSS 240 (343)
Q Consensus 169 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (343)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 777777877 899999999999988874 45677778888888 899999999999988875 2667788
Q ss_pred HHHHHHc----cCChHHHHHHHHHHhhCC
Q 044084 241 MVAMYGK----TGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 241 l~~~~~~----~~~~~~a~~~~~~m~~~~ 265 (343)
+...|.. .+++++|...|++..+.|
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888888 899999999999988864
No 43
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=5e-14 Score=124.02 Aligned_cols=330 Identities=12% Similarity=0.090 Sum_probs=167.0
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHh-hccCcHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL-GKSGRAFEIL 80 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~ 80 (343)
++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|+++.... |+ ...|...+... ...|+.+.|.
T Consensus 27 ~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~---~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 27 PIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LH---IDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CC---HHHHHHHHHHHHHHTTTSTTHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC---hHHHHHHHHHHHHHccchhhHH
Confidence 4567777777777753 2456677777777777778888888877776554 22 44666665432 2345555544
Q ss_pred H----HHHHHHhc-CCCC-ChHhHHHHHHHHhc---------ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----
Q 044084 81 K----FFRDMKEK-GILE-DPSVYASLICSFAS---------IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY----- 140 (343)
Q Consensus 81 ~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----- 140 (343)
+ +|++.... |..| +...|...+....+ .|+++.|..+|++..+.........|.......
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 4 55555443 4333 34556665555443 577888888888777621111122332221110
Q ss_pred --------HhcCcHhHHHHHHH----------------------------------------------------------
Q 044084 141 --------IEEGMVEKTLEVVE---------------------------------------------------------- 154 (343)
Q Consensus 141 --------~~~~~~~~a~~~~~---------------------------------------------------------- 154 (343)
.+.+++..|..++.
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 01122333333333
Q ss_pred --HHHhcCCCCchhhHHHHHHHHhc-------CCcHH-------HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhH
Q 044084 155 --SMKNAELNISDCISCVIVNGFSK-------RRAYW-------AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSK 218 (343)
Q Consensus 155 --~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 218 (343)
+.....+ .+...|..++..+.. .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++
T Consensus 261 y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 261 YEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 2222211 122333333333332 45544 555566555542112234455555555556666666
Q ss_pred HHHHHHHHHHcCCCcC-h-hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHH-HhcccChhHHHh----
Q 044084 219 AEKVFIEMQQKGFDKC-V-VAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDM-HGRAKNLRQLEK---- 291 (343)
Q Consensus 219 a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~---- 291 (343)
|..+|+.+.+. +|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...+...... +...|+.++|..
T Consensus 340 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 340 VHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 66666666553 232 1 355555555555666666666666665531 1111122111111 223555555544
Q ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-Ccc--HHHHHHHHHHHhcccccc
Q 044084 292 -----------YTTVISAYNMAREFDMCVKFYNEFRMNGG-VID--RAMAGIMVGVFSKLSQIE 341 (343)
Q Consensus 292 -----------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~g~~~ 341 (343)
|..++..+.+.|+.++|..+|++....+. .|+ ...|...+....+.|+.+
T Consensus 417 al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 417 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 55555555666666666666666665432 222 234555555555555544
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=6.7e-15 Score=123.07 Aligned_cols=247 Identities=10% Similarity=0.069 Sum_probs=202.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCc-HHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGR-AFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
...|..+...+.+.|++++|+..|+++.+.+ |.+..+|+.+...+...|+ +++|+..|++..+.... +...|..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~----P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 3568888899999999999999999998765 4446899999999999997 99999999999987543 6778999
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc-CC
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK-RR 179 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 179 (343)
+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++.+.++ -+...|+.+..++.. .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998764 899999999999999999999999999998876 567789999999888 66
Q ss_pred cHHHH-----HHHHHHHHHcCCCCCHhhHHHHHHHHHccC--ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccC---
Q 044084 180 AYWAA-----VKVYEQLISQGCIPGQVTYASIINAYCRIG--LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG--- 249 (343)
Q Consensus 180 ~~~~a-----~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 249 (343)
..++| +..+++..... +-+...|..+...+...| ++++|.+.+..+ +.. +.+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 65666 58888888764 335678888888888888 689999999887 433 456778889999998874
Q ss_pred ------ChHHHHHHHHHH-hhCCCCch-HHHHHHHHHHH
Q 044084 250 ------RIRDAMRLVAKM-KPKGCEPN-VWIYNSLMDMH 280 (343)
Q Consensus 250 ------~~~~a~~~~~~m-~~~~~~p~-~~~~~~l~~~~ 280 (343)
..++|..+++++ .+. .|. ...|..+...+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 258999999998 654 443 34455554443
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=1.5e-15 Score=119.59 Aligned_cols=198 Identities=12% Similarity=0.079 Sum_probs=94.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYI 141 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (343)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 34444444455555555555555544432 113444444445555555555555555555444321 4455555555555
Q ss_pred hcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHH
Q 044084 142 EEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEK 221 (343)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 221 (343)
..|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555554433 233445555555555555555555555555442 2234455555555556666666666
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 222 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
.++.+.+.. +.+..++..+...|...|++++|...++++.+.
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666555543 234455555666666666666666666665553
No 46
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1e-13 Score=122.05 Aligned_cols=322 Identities=11% Similarity=0.082 Sum_probs=231.7
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc
Q 044084 10 YEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK 89 (343)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 89 (343)
|++.++..+ -+...|..++.. .+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|++....
T Consensus 2 le~al~~~P-~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~----P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF----PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhhHhhhCC-CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 455555442 477789999984 78899999999999998764 334688999999999999999999999999886
Q ss_pred CCCCChHhHHHHHHHH-hcccCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCcHhHHHHHH
Q 044084 90 GILEDPSVYASLICSF-ASIAEVKVAEE----LFKEAEEK-GMLR-DLEVFLKLVLMYIE---------EGMVEKTLEVV 153 (343)
Q Consensus 90 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~ 153 (343)
. |+...|...+... ...|+.+.|.+ +|++.... |..| +...|...+....+ .|+++.|..+|
T Consensus 76 ~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 V--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred C--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 3 6777777766533 34466665554 77776653 5443 57788888877655 68899999999
Q ss_pred HHHHhcCCCCchhhHHH---------------------------------------------------------------
Q 044084 154 ESMKNAELNISDCISCV--------------------------------------------------------------- 170 (343)
Q Consensus 154 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------- 170 (343)
++..+.........|..
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 98876311111112221
Q ss_pred --HHHHHhc----CCc----HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-------cCChh-------HHHHHHHHH
Q 044084 171 --IVNGFSK----RRA----YWAAVKVYEQLISQGCIPGQVTYASIINAYCR-------IGLYS-------KAEKVFIEM 226 (343)
Q Consensus 171 --l~~~~~~----~~~----~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~ 226 (343)
.+..... .++ ...+..+|++..... +-+...|......+.+ .|+++ +|..+++..
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 1100000 011 136778899888763 4466778777777765 68887 899999998
Q ss_pred HHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCch--HHHHHHHHHHHhcccChhHHHh-------------
Q 044084 227 QQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPN--VWIYNSLMDMHGRAKNLRQLEK------------- 291 (343)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~------------- 291 (343)
.+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|+.++|..
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~ 390 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH 390 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch
Confidence 86323456888999999999999999999999999985 453 3578888888889999988877
Q ss_pred --HHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccccC
Q 044084 292 --YTTVI-SAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIEEL 343 (343)
Q Consensus 292 --~~~l~-~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 343 (343)
|.... ..+...|++++|..+|++..+... -+...|..++..+.+.|+.++|
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~A 444 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNT 444 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhH
Confidence 11111 113368999999999999887632 3567889999999999887653
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=1.6e-14 Score=112.07 Aligned_cols=211 Identities=8% Similarity=-0.094 Sum_probs=177.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHH
Q 044084 20 LDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYA 99 (343)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (343)
.+...+..+...+...|++++|.+.|+.+.+... .+...|..+...+...|++++|.+.+++..... +.+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 80 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP----KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINN 80 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHH
Confidence 3566788899999999999999999999887652 235789999999999999999999999998864 33677888
Q ss_pred HHHHHHhcc-cCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc
Q 044084 100 SLICSFASI-AEVKVAEELFKEAEEKGMLR-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177 (343)
Q Consensus 100 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (343)
.+...+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+..+ .+...+..+...+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHH
Confidence 899999999 99999999999998833233 367889999999999999999999999988765 456788899999999
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhH
Q 044084 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAY 238 (343)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (343)
.|++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.. |+....
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~ 218 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEEL 218 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHH
Confidence 99999999999999887421466777778888899999999999999988764 444333
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=1e-14 Score=115.50 Aligned_cols=202 Identities=13% Similarity=0.068 Sum_probs=175.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHH
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASL 101 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (343)
...+..+...+...|++++|.+.|+++.+.. |....++..+...+...|++++|.+.++++.+... .+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID----PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHH
Confidence 5678888999999999999999999998764 22367899999999999999999999999988743 367788889
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKGMLR-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (343)
...+...|++++|...++++.+.+..| +...+..+...+...|++++|...|++..+... .+...+..+...+...|+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCC
Confidence 999999999999999999998833334 577888999999999999999999999988765 456788899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 044084 181 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (343)
+++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999998764 4566778888899999999999999999998874
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=2.8e-15 Score=118.01 Aligned_cols=213 Identities=14% Similarity=0.080 Sum_probs=163.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHH
Q 044084 20 LDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYA 99 (343)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (343)
.....|..+...+.+.|++++|...|+++.+.. |.+...+..+...+...|++++|++.+++..+.. +.+...+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN----KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ---------------------CCTTHHHHHTTC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 456678888999999999999999999998754 3336889999999999999999999999998874 33677888
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR 179 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (343)
.+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+... .+...+..+...+...|
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcC
Confidence 8999999999999999999999987643 788899999999999999999999999987765 46678888999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHH
Q 044084 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSM 241 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (343)
++++|...++++.+.. +.+..++..+..+|...|++++|...++.+.+.. +.+...+..+
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 9999999999998874 3457788899999999999999999999998875 3344444433
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=2e-14 Score=115.17 Aligned_cols=256 Identities=12% Similarity=0.082 Sum_probs=193.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR--DLEVFLKLVLM 139 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 139 (343)
.+......+...|++++|+..|++..+... .+...+..+...+...|++++|...+++..+.+..+ ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 456678889999999999999999988743 255588889999999999999999999999843222 24568999999
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHH
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKA 219 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 219 (343)
+...|++++|+..|++..+..+ .+..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988765 456789999999999999999999999988763 34556666666244445699999
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHccCC---hHHHHHHHHHHhhCC-CCchHHHHHHHHHHHhcccChhHHHhHHHH
Q 044084 220 EKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR---IRDAMRLVAKMKPKG-CEPNVWIYNSLMDMHGRAKNLRQLEKYTTV 295 (343)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l 295 (343)
...|+...+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+.. -..+..+ |..+
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~------------~~~l 227 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDELIEA------------NEYI 227 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHHHHH------------HHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHHHHH------------HHHH
Confidence 99999999875 4457788888888888888 888998888887541 123321 1111111 5556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 044084 296 ISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFS 335 (343)
Q Consensus 296 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 335 (343)
...|...|++++|.+.|++..+... -+...+..+.....
T Consensus 228 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 228 AYYYTINRDKVKADAAWKNILALDP-TNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCc-cHHHHHHHhhhhhc
Confidence 6778889999999999999988642 23444544444433
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=2e-14 Score=120.17 Aligned_cols=259 Identities=10% Similarity=0.086 Sum_probs=206.1
Q ss_pred CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC-HHHHHHHHHHHHHcCCCCCHHHHHH
Q 044084 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE-VKVAEELFKEAEEKGMLRDLEVFLK 135 (343)
Q Consensus 57 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (343)
|....+|+.+...+...|++++|++.+++.+..... +...|+.+..++...|+ +++|+..++++.+..+. +...|..
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~ 171 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 445688999999999999999999999999987432 57788999999999996 99999999999998765 8999999
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-cC
Q 044084 136 LVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR-IG 214 (343)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~ 214 (343)
+..++...|++++|+..|+++.+.++ -+...|..+..++...|++++|+..++++.+.. +-+...|+.+..++.. .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998876 577889999999999999999999999999885 3467888999999988 66
Q ss_pred ChhHH-----HHHHHHHHHcCCCcChhhHHHHHHHHHccC--ChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChh
Q 044084 215 LYSKA-----EKVFIEMQQKGFDKCVVAYSSMVAMYGKTG--RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLR 287 (343)
Q Consensus 215 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 287 (343)
..++| ...++...+.. +-+...|+.+...+...| ++++|.+.+.++ +. ...+...+..+...|.+.|+..
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 65777 48888888875 446788999999999888 689999999888 33 2345667777777666543110
Q ss_pred HHHhHHHHHHHHHhcCC-HHHHHHHHHHH-HhCCCCccHH-HHHHHHHHHh
Q 044084 288 QLEKYTTVISAYNMARE-FDMCVKFYNEF-RMNGGVIDRA-MAGIMVGVFS 335 (343)
Q Consensus 288 ~a~~~~~l~~~~~~~g~-~~~a~~~~~~m-~~~~~~p~~~-~~~~l~~~~~ 335 (343)
. ...++ +++|+++|+++ .+. .|... .|..+...+.
T Consensus 327 ~-----------~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 327 C-----------DNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp C-----------SSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred c-----------cchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 0 00122 47899999998 553 45544 4555555544
No 52
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=1.8e-13 Score=127.08 Aligned_cols=260 Identities=13% Similarity=0.141 Sum_probs=195.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhccc
Q 044084 30 EAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIA 109 (343)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (343)
..+...|.+++|..+|++.. .. ....+.++. ..+++++|.++.++. -++.+|..+..++.+.|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~----~~----~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD----VN----TSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC----CH----HHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 34556677777777777652 11 233344433 556777777777754 24667888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHH
Q 044084 110 EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYE 189 (343)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (343)
++++|...|.+. -|...|..++..+.+.|++++|.+.|....+... +....+.++.+|++.++++....+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999988653 3778888899999999999999999988776553 2223445888888888887544442
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCch
Q 044084 190 QLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPN 269 (343)
Q Consensus 190 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 269 (343)
+ .|+...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++.. +
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 2 356667778888999999999999999874 478999999999999999999998873 6
Q ss_pred HHHHHHHHHHHhcccChhHHHh-----------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc
Q 044084 270 VWIYNSLMDMHGRAKNLRQLEK-----------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKL 337 (343)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~-----------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 337 (343)
..+|..+..+|...|+++.|.. +..++..|.+.|.+++|+.+++..+... +-....|.-|..+|++.
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 6889999999999999888877 6788899999999999999998876543 22223465666666553
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=2.8e-13 Score=108.65 Aligned_cols=228 Identities=12% Similarity=-0.002 Sum_probs=188.1
Q ss_pred hHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhc----ccCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044084 59 STHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFAS----IAEVKVAEELFKEAEEKGMLRDLEVFL 134 (343)
Q Consensus 59 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (343)
+..++..+...+...|++++|++.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 35788889999999999999999999998843 56678888888998 999999999999999875 788999
Q ss_pred HHHHHHHh----cCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc----CCcHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 044084 135 KLVLMYIE----EGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK----RRAYWAAVKVYEQLISQGCIPGQVTYASI 206 (343)
Q Consensus 135 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 206 (343)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999998875 55678888888988 999999999999999875 55677778
Q ss_pred HHHHHc----cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHc----cCChHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 044084 207 INAYCR----IGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK----TGRIRDAMRLVAKMKPKGCEPNVWIYNSLMD 278 (343)
Q Consensus 207 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 278 (343)
...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+. ...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 888887 899999999999998875 46778889999999 9999999999999988742 344444444
Q ss_pred HHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044084 279 MHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNG 319 (343)
Q Consensus 279 ~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 319 (343)
.|... ....+++++|++.|++..+.|
T Consensus 227 ~~~~g---------------~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNG---------------EGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTT---------------SSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcC---------------CCcccCHHHHHHHHHHHHHcC
Confidence 44330 001667777888888877765
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=8.6e-15 Score=124.20 Aligned_cols=307 Identities=12% Similarity=0.026 Sum_probs=213.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc----CCCC-
Q 044084 19 VLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK----GILE- 93 (343)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~- 93 (343)
.+....+......+...|++++|...|+++.+...........+|..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555677788899999999999999999988643221111357888999999999999999999987543 2122
Q ss_pred ChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCc--------------------HhH
Q 044084 94 DPSVYASLICSFASIAEVKVAEELFKEAEEKGML-RD----LEVFLKLVLMYIEEGM--------------------VEK 148 (343)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~ 148 (343)
...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456777888999999999999999887763211 12 4578889999999999 999
Q ss_pred HHHHHHHHHhc----C-CCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHccCChhH
Q 044084 149 TLEVVESMKNA----E-LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGC-IPG----QVTYASIINAYCRIGLYSK 218 (343)
Q Consensus 149 a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~ 218 (343)
|...+++.... + .+....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999886542 1 111234677888899999999999999998875410 111 2367888889999999999
Q ss_pred HHHHHHHHHHcC----CCc-ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCC-CchHHHHHHHHHHHhcccChhHHHhH
Q 044084 219 AEKVFIEMQQKG----FDK-CVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGC-EPNVWIYNSLMDMHGRAKNLRQLEKY 292 (343)
Q Consensus 219 a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 292 (343)
|...++...+.. ..+ ...++..+...|...|++++|...+++..+... .++. ...+..+
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------------~~~~~~~ 310 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR---------------IGEGRAC 310 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc---------------HHHHHHH
Confidence 999999877542 111 155788889999999999999999998765310 0010 0011113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcc-HHHHHHHHHHHhccccc
Q 044084 293 TTVISAYNMAREFDMCVKFYNEFRMN----GGVID-RAMAGIMVGVFSKLSQI 340 (343)
Q Consensus 293 ~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~ 340 (343)
..+...|...|++++|.+.+++..+. +..+. ..++..+..++...|+.
T Consensus 311 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 44555566666666676666665332 22222 23466666777766655
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=2.6e-15 Score=127.78 Aligned_cols=242 Identities=10% Similarity=0.052 Sum_probs=183.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc----CC-CCChHh
Q 044084 23 GCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK----GI-LEDPSV 97 (343)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 97 (343)
..+..+...+...|++++|...|+++.+...........+|..+...+...|++++|++.+++..+. +. .....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3455677788999999999999999988643211111257888999999999999999999988653 11 123456
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCc-----------------HhHHHHHHHH
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKG-----MLRDLEVFLKLVLMYIEEGM-----------------VEKTLEVVES 155 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 155 (343)
+..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 7788889999999999999999877641 11235678889999999999 9999999888
Q ss_pred HHhc----CC-CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHccCChhHHHHHHHH
Q 044084 156 MKNA----EL-NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGC-IPG----QVTYASIINAYCRIGLYSKAEKVFIE 225 (343)
Q Consensus 156 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 225 (343)
..+. +. .....++..+...+...|++++|...+++..+... .++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 11 11234677888999999999999999998876411 011 23678888999999999999999998
Q ss_pred HHHcCCC-----cChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 226 MQQKGFD-----KCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 226 ~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
..+.... ....++..+...|...|++++|...+++..+.
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7764211 12567888999999999999999999988753
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=2.5e-14 Score=121.38 Aligned_cols=269 Identities=13% Similarity=0.103 Sum_probs=194.1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC----hHhHHHHHHHHhcccCHHHHHHHHHHHHHc----CCCC-CH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILED----PSVYASLICSFASIAEVKVAEELFKEAEEK----GMLR-DL 130 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 130 (343)
...+......+...|++++|+..|++..+.+.. + ...+..+...+...|+++.|...+++..+. +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 466777888999999999999999999887422 3 356778888999999999999999987653 2112 25
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC-C----chhhHHHHHHHHhcCCc--------------------HHHHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELN-I----SDCISCVIVNGFSKRRA--------------------YWAAV 185 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~~a~ 185 (343)
.++..+...|...|++++|...+++....... . ...++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 67888999999999999999999987653210 1 13367888889999999 99999
Q ss_pred HHHHHHHHc----CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC-c----ChhhHHHHHHHHHccCChHHHH
Q 044084 186 KVYEQLISQ----GCIP-GQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFD-K----CVVAYSSMVAMYGKTGRIRDAM 255 (343)
Q Consensus 186 ~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~ 255 (343)
..+++.... +..| ...++..+...|...|++++|...+++..+.... + ...++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999887543 2111 2346778888999999999999999988764110 1 1347888999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcc-HHHHHHH
Q 044084 256 RLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMN----GGVID-RAMAGIM 330 (343)
Q Consensus 256 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l 330 (343)
..+++..+.. |+.. .....+..+..+...|...|++++|...+++..+. +-.+. ..++..+
T Consensus 248 ~~~~~al~~~--~~~~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 313 (406)
T 3sf4_A 248 EYYKKTLLLA--RQLK------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313 (406)
T ss_dssp HHHHHHHHHH--HHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HhCc------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 9999887531 1100 00001111455666677778888888888776543 21122 3467888
Q ss_pred HHHHhcccccccC
Q 044084 331 VGVFSKLSQIEEL 343 (343)
Q Consensus 331 ~~~~~~~g~~~~a 343 (343)
..+|.+.|++++|
T Consensus 314 a~~~~~~g~~~~A 326 (406)
T 3sf4_A 314 GNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHH
Confidence 8899998888764
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=1.4e-14 Score=123.26 Aligned_cols=258 Identities=13% Similarity=0.036 Sum_probs=198.6
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCCh----HhHHHHHHHHhcccCHHHHHHHHHHHHHc----CC-CCCH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDP----SVYASLICSFASIAEVKVAEELFKEAEEK----GM-LRDL 130 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 130 (343)
...+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...+++..+. +. ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 455667788899999999999999999887432 33 46788888999999999999999988763 11 1246
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcC-----CCCchhhHHHHHHHHhcCCc-----------------HHHHHHHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAE-----LNISDCISCVIVNGFSKRRA-----------------YWAAVKVY 188 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 188 (343)
.++..+...|...|++++|...+++..... .+....++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 778889999999999999999999876531 11234467888889999999 99999999
Q ss_pred HHHHHc----CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC-cC----hhhHHHHHHHHHccCChHHHHHHH
Q 044084 189 EQLISQ----GCIP-GQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFD-KC----VVAYSSMVAMYGKTGRIRDAMRLV 258 (343)
Q Consensus 189 ~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 258 (343)
++..+. +..+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887543 2112 2346778888999999999999999988764211 11 237888999999999999999999
Q ss_pred HHHhhCC----CC-chHHHHHHHHHHHhcccChhHHHh---------------------HHHHHHHHHhcCCHHHHHHHH
Q 044084 259 AKMKPKG----CE-PNVWIYNSLMDMHGRAKNLRQLEK---------------------YTTVISAYNMAREFDMCVKFY 312 (343)
Q Consensus 259 ~~m~~~~----~~-p~~~~~~~l~~~~~~~~~~~~a~~---------------------~~~l~~~~~~~g~~~~a~~~~ 312 (343)
++..+.. .. ....++..+...|...|++++|.. +..+...|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9887531 11 124667788888888999888876 566777888889999999888
Q ss_pred HHHHhC
Q 044084 313 NEFRMN 318 (343)
Q Consensus 313 ~~m~~~ 318 (343)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=1.9e-14 Score=118.63 Aligned_cols=282 Identities=13% Similarity=0.049 Sum_probs=204.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc----CCCC-ChHh
Q 044084 23 GCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK----GILE-DPSV 97 (343)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 97 (343)
..+......+...|++++|...|+++.+............+..+...+...|++++|.+.+++.... +..| ...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455667788999999999999999988643221111367888999999999999999999887543 2122 2456
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCc--------------------HhHHHHH
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKGML-RD----LEVFLKLVLMYIEEGM--------------------VEKTLEV 152 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 152 (343)
+..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 778888999999999999999987753211 12 4478888999999999 9999999
Q ss_pred HHHHHhc----C-CCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHccCChhHHHHH
Q 044084 153 VESMKNA----E-LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ----GCI-PGQVTYASIINAYCRIGLYSKAEKV 222 (343)
Q Consensus 153 ~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~ll~~~~~~~~~~~a~~~ 222 (343)
+++.... + ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876532 1 1112346778888899999999999999987654 111 1123677888889999999999999
Q ss_pred HHHHHHcCC----Cc-ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHH
Q 044084 223 FIEMQQKGF----DK-CVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVIS 297 (343)
Q Consensus 223 ~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~ 297 (343)
++...+... ++ ...++..+...+...|++++|...+++..+. .+.... ....+..+..+..
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~------------~~~~~~~~~~la~ 311 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI--AQELKD------------RIGEGRACWSLGN 311 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHTC------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--HHhcCC------------cHHHHHHHHHHHH
Confidence 998775421 11 1557788889999999999999999988753 111100 0111111555677
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 044084 298 AYNMAREFDMCVKFYNEFRMN 318 (343)
Q Consensus 298 ~~~~~g~~~~a~~~~~~m~~~ 318 (343)
.|...|++++|...+++..+.
T Consensus 312 ~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 312 AYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHcCChHHHHHHHHHHHHH
Confidence 788888899999999888764
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=4.8e-13 Score=109.22 Aligned_cols=218 Identities=8% Similarity=0.074 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhc-------cCcH-------HHHHHHHHHHHhcCCCC-ChHhHHHHHH
Q 044084 39 EKVAALFLECESRKLDLTPSSTHMYKILCDSLGK-------SGRA-------FEILKFFRDMKEKGILE-DPSVYASLIC 103 (343)
Q Consensus 39 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 103 (343)
++|..+|+++.... |.+...|..++..+.. .|++ ++|..+|++..+. +.| +...|..++.
T Consensus 33 ~~a~~~~~~al~~~----p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHH
Confidence 67778888876654 3335678777776653 4664 7888888888773 123 4557778888
Q ss_pred HHhcccCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHH-hcCCcH
Q 044084 104 SFASIAEVKVAEELFKEAEEKGMLRDLE-VFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGF-SKRRAY 181 (343)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 181 (343)
.+.+.|++++|..+|+++.+..+. +.. +|..++..+.+.|++++|..+|++..+..+ .+...|....... ...|++
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCH
T ss_pred HHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCH
Confidence 888888888888888888875432 343 788888888888888888888888877654 3344444333332 236888
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcC-CCc--ChhhHHHHHHHHHccCChHHHHHHH
Q 044084 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG-FDK--CVVAYSSMVAMYGKTGRIRDAMRLV 258 (343)
Q Consensus 182 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (343)
++|.++|++..+.. +-+...|..++..+.+.|++++|..+|+...+.. ++| ....|..++..+.+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888877653 3356677777888888888888888888888752 344 3567777888888888888888888
Q ss_pred HHHhhC
Q 044084 259 AKMKPK 264 (343)
Q Consensus 259 ~~m~~~ 264 (343)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=2.5e-13 Score=102.07 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=89.4
Q ss_pred hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 044084 95 PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG 174 (343)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (343)
+..|..+...+...|++++|...|++..+..+. +..++..+..+|.+.|++++|...+........ .+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 344555555555555555555555555554432 455555555555555555555555555544433 233344444555
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHH
Q 044084 175 FSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDA 254 (343)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (343)
+...++++.+...+.+..... +.+...+..+..+|.+.|++++|...|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555555442 2234445555555666666666666666655543 33455566666666666666666
Q ss_pred HHHHHHHhhC
Q 044084 255 MRLVAKMKPK 264 (343)
Q Consensus 255 ~~~~~~m~~~ 264 (343)
...|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666666553
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=1.8e-13 Score=102.79 Aligned_cols=167 Identities=15% Similarity=0.114 Sum_probs=110.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
++..|..+...|.+.|++++|.+.|++..+.+ |.+..+|..+...+.+.|++++|+..+......... +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHH
Confidence 45566777777777777777777777766554 333566777777777777777777777776665322 4455555
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (343)
+...+...++++.+...+.+..+..+. +...+..+...|.+.|++++|++.|++..+..+ .+..+|..+..+|...|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCC
Confidence 666666677777777777776665433 566666777777777777777777777666554 345566666677777777
Q ss_pred HHHHHHHHHHHHHc
Q 044084 181 YWAAVKVYEQLISQ 194 (343)
Q Consensus 181 ~~~a~~~~~~~~~~ 194 (343)
+++|.+.|++..+.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777766654
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.62 E-value=3.1e-13 Score=113.95 Aligned_cols=286 Identities=13% Similarity=0.029 Sum_probs=192.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CCchHHHHHHHHHH--hhccCcHHHHH-----------HHHHHHHhcCCCCCh--
Q 044084 32 FYKIGDSEKVAALFLECESRKLDL-TPSSTHMYKILCDS--LGKSGRAFEIL-----------KFFRDMKEKGILEDP-- 95 (343)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~li~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~-- 95 (343)
+.+.+++++|..+++++.+.-... ...+...|-.++.. ....++++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 467899999999999986643221 11223333333332 11223333343 566665442111010
Q ss_pred --HhHHHHHHHHhcccCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC------
Q 044084 96 --SVYASLICSFASIAEVKVAEELFKEAEEK----GMLR-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN------ 162 (343)
Q Consensus 96 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 162 (343)
..+......+...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 01122455677889999999999998764 1111 3567888999999999999999999887653211
Q ss_pred CchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc----CC-C
Q 044084 163 ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ----GCIP-GQVTYASIINAYCRIGLYSKAEKVFIEMQQK----GF-D 232 (343)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~ 232 (343)
....+++.+...|...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 11346778888999999999999999887754 1111 1246788888999999999999999988772 32 3
Q ss_pred cChhhHHHHHHHHHccCChHHHHHHHHHHhhC----CCCchHHHHHHHHHHHhcccC---hhHHHh--------------
Q 044084 233 KCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK----GCEPNVWIYNSLMDMHGRAKN---LRQLEK-------------- 291 (343)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~~~---~~~a~~-------------- 291 (343)
....++..+...|.+.|++++|...+++..+. +-......+..+...+...|+ .++|..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 34667888999999999999999999887753 111122335566677777777 444443
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 292 YTTVISAYNMAREFDMCVKFYNEFRM 317 (343)
Q Consensus 292 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 317 (343)
+..+...|...|++++|...+++..+
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66778888888888888888887754
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=1e-12 Score=107.27 Aligned_cols=218 Identities=13% Similarity=0.093 Sum_probs=178.5
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhC-CCCCCCchHHHHHHHHH
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFY-------KIGDS-------EKVAALFLECESR-KLDLTPSSTHMYKILCD 68 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~~~~li~ 68 (343)
++|+.+|++..+.. +.+...|..++..+. +.|++ ++|..+|++..+. . |.+...|..++.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~----p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL----KKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC----cccHHHHHHHHH
Confidence 67889999999864 357778888888776 35886 8999999998773 3 333678999999
Q ss_pred HhhccCcHHHHHHHHHHHHhcCCCCC-hH-hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCc
Q 044084 69 SLGKSGRAFEILKFFRDMKEKGILED-PS-VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYI-EEGM 145 (343)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 145 (343)
.+...|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+... .+...|........ ..|+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999985 444 33 799999999999999999999999998754 35556654444432 3699
Q ss_pred HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC-CCCC--HhhHHHHHHHHHccCChhHHHHH
Q 044084 146 VEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG-CIPG--QVTYASIINAYCRIGLYSKAEKV 222 (343)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~ 222 (343)
+++|..+|++..+..+ .+...|..++..+...|++++|..+|++..... ++|+ ...|..++....+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999987654 467789999999999999999999999999863 4553 56788888888999999999999
Q ss_pred HHHHHHcC
Q 044084 223 FIEMQQKG 230 (343)
Q Consensus 223 ~~~~~~~~ 230 (343)
++.+.+..
T Consensus 264 ~~~a~~~~ 271 (308)
T 2ond_A 264 EKRRFTAF 271 (308)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998864
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1e-13 Score=119.93 Aligned_cols=217 Identities=11% Similarity=0.013 Sum_probs=175.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcH-HHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHH
Q 044084 36 GDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRA-FEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVA 114 (343)
Q Consensus 36 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 114 (343)
+.++++...++...... +.....+..+...+...|++ ++|++.|++..+... -+...|..+...+...|++++|
T Consensus 82 ~~~~~al~~l~~~~~~~----~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA----QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccC----chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 34677777777765543 22367888888999999999 999999999887642 2577888888999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc---------CcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC-------
Q 044084 115 EELFKEAEEKGMLRDLEVFLKLVLMYIEE---------GMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR------- 178 (343)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 178 (343)
...|++..+.. |+...+..+...|... |++++|++.|++..+..+ .+...|..+..+|...
T Consensus 157 ~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 157 HTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccc
Confidence 99999988765 5678888888889888 999999999999888765 4567788888888888
Q ss_pred -CcHHHHHHHHHHHHHcCCC---CCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHH
Q 044084 179 -RAYWAAVKVYEQLISQGCI---PGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDA 254 (343)
Q Consensus 179 -~~~~~a~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (343)
|++++|...|++..+.. + -+...+..+..+|...|++++|...|+...+.. +.+...+..+...+...|++++|
T Consensus 234 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999988863 2 367788888899999999999999999988875 44567788888888888999988
Q ss_pred HHHHHHHh
Q 044084 255 MRLVAKMK 262 (343)
Q Consensus 255 ~~~~~~m~ 262 (343)
.+.+.++.
T Consensus 312 i~~~~~~~ 319 (474)
T 4abn_A 312 LESKGKTK 319 (474)
T ss_dssp HHHTTTCC
T ss_pred HHHhcccc
Confidence 87766654
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=4.4e-14 Score=116.44 Aligned_cols=263 Identities=15% Similarity=0.083 Sum_probs=198.9
Q ss_pred CchhhHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCCchHHHHHHHHHHhhccC
Q 044084 1 TNSQSKLHYYEKMKSAGIVLD----SGCYCQIMEAFYKIGDSEKVAALFLECESRK--LDLTPSSTHMYKILCDSLGKSG 74 (343)
Q Consensus 1 ~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~ 74 (343)
.++++|+..|+++.+.+.. + ...+..+...+...|++++|.+.+++..... ....+....++..+...+...|
T Consensus 19 g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 3678999999999986432 3 3678889999999999999999998865431 1112233567888999999999
Q ss_pred cHHHHHHHHHHHHhcCC-CCC----hHhHHHHHHHHhcccC--------------------HHHHHHHHHHHHHc----C
Q 044084 75 RAFEILKFFRDMKEKGI-LED----PSVYASLICSFASIAE--------------------VKVAEELFKEAEEK----G 125 (343)
Q Consensus 75 ~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~ 125 (343)
++++|.+.+++..+... .++ ..++..+...+...|+ ++.|...+++..+. +
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999998765311 112 3367788888999999 99999998876542 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC-----CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC----
Q 044084 126 MLR-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL-----NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG---- 195 (343)
Q Consensus 126 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 195 (343)
..+ ...++..+...+...|++++|...+++..+... .....++..+...+...|++++|...+++.....
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 111 245788889999999999999999998764321 1112367788889999999999999999877541
Q ss_pred CCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcC----C-CcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 196 CIP-GQVTYASIINAYCRIGLYSKAEKVFIEMQQKG----F-DKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 196 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
..+ ...++..+...+...|++++|...++...+.. - .....++..+...|...|++++|...+++..+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 14567778889999999999999999877641 1 112447788999999999999999999998864
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.5e-13 Score=118.99 Aligned_cols=211 Identities=9% Similarity=-0.006 Sum_probs=181.6
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHH
Q 044084 74 GRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEV-KVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEV 152 (343)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (343)
+.+++++..+++..... +.+...+..+...+...|++ ++|...|++..+..+. +...|..+...|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44778888888776643 34677888899999999999 9999999999987643 689999999999999999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHhcC---------CcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc--------CC
Q 044084 153 VESMKNAELNISDCISCVIVNGFSKR---------RAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI--------GL 215 (343)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--------~~ 215 (343)
|++..+.. |+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99998876 4567888999999999 99999999999999874 34577888899999888 99
Q ss_pred hhHHHHHHHHHHHcCCC---cChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh
Q 044084 216 YSKAEKVFIEMQQKGFD---KCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK 291 (343)
Q Consensus 216 ~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 291 (343)
+++|...|+...+.. + .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|..
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 3 478899999999999999999999999998763 2256678888899999999999887
No 67
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=6e-12 Score=117.07 Aligned_cols=249 Identities=12% Similarity=0.170 Sum_probs=140.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHH
Q 044084 22 SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASL 101 (343)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (343)
..+|..+..++.+.|++++|.+.|.+. .+ ...|..++.++.+.|++++|++.|...++.. +++...+.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD---~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DD---PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 445555555555555555555555332 11 2345555555555555555555555544432 222222235
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcH
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY 181 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (343)
+.+|++.++++...... + .++...|..+...|...|++++|..+|... ..|..+..++.+.|++
T Consensus 1174 afaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCH
Confidence 55555555554322221 1 134444555666666666666666666653 1456666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHH
Q 044084 182 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM 261 (343)
Q Consensus 182 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 261 (343)
++|.+.+++. .+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..
T Consensus 1238 q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1238 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666654 2345566666666666666665554432 2334566778888999999999999999887
Q ss_pred hhCCCCchHHHHHHHHHHHhc---------------ccChhHHHh-------HHHHHHHHHhcCCHHHHH
Q 044084 262 KPKGCEPNVWIYNSLMDMHGR---------------AKNLRQLEK-------YTTVISAYNMAREFDMCV 309 (343)
Q Consensus 262 ~~~~~~p~~~~~~~l~~~~~~---------------~~~~~~a~~-------~~~l~~~~~~~g~~~~a~ 309 (343)
.... +-....|+-+...|.+ .++.....+ |..++..|.+.|+++.|.
T Consensus 1307 L~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1307 LGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 7543 2233444444444333 223222111 888889999999999888
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=1.4e-13 Score=112.29 Aligned_cols=242 Identities=12% Similarity=0.069 Sum_probs=149.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc------C
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKL----DLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK------G 90 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~ 90 (343)
+..++..+...+...|++++|...|+++.+... ...+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345677788888888888888888888876310 012333567778888888888888888888887654 1
Q ss_pred CCC-ChHhHHHHHHHHhcccCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc---
Q 044084 91 ILE-DPSVYASLICSFASIAEVKVAEELFKEAEEK------GMLR-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNA--- 159 (343)
Q Consensus 91 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 159 (343)
-.| ...++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++|++.+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 112 3456677777888888888888888877764 2112 3556777778888888888888888877653
Q ss_pred ---CCCC-chhhHHHHHHHHhcCCcHHHHHHHHHHHHHc-------CCCCCHhh-------HHHHHHHHHccCChhHHHH
Q 044084 160 ---ELNI-SDCISCVIVNGFSKRRAYWAAVKVYEQLISQ-------GCIPGQVT-------YASIINAYCRIGLYSKAEK 221 (343)
Q Consensus 160 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~-------~~~ll~~~~~~~~~~~a~~ 221 (343)
+..| ...++..+...+...|++++|...++++.+. ...+.... +..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1112 2345677777888888888888888877653 11122111 1122222334445555556
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 222 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
.+....... +.+..++..+...|.+.|++++|...|++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666555432 33456677777888888888888888777654
No 69
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=4.1e-12 Score=109.27 Aligned_cols=293 Identities=11% Similarity=0.067 Sum_probs=160.7
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccC----
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDS---EKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSG---- 74 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---- 74 (343)
++++|+++|++..+.| +...+..|...|...|+. ++|...|++..+. . ...+..|...+...+
T Consensus 18 ~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~-----~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--S-----PRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------------CHHHHHHHHHTC--CCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--C-----HHHHHHHHHHHHhCCCCCC
Confidence 5678888888887765 334455566666667777 8888888877654 2 234555666444443
Q ss_pred -cHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHH---HHHHHHHHHHHcC-------------------------
Q 044084 75 -RAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVK---VAEELFKEAEEKG------------------------- 125 (343)
Q Consensus 75 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~------------------------- 125 (343)
++++|+.+|++..+.|.. + .+..|...|...+..+ .+.+.+......|
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred cCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence 778888888887776532 2 3444444443332211 1111111111111
Q ss_pred -------CCCCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC----CcHHHHHHHHHHH
Q 044084 126 -------MLRDLEVFLKLVLMYIEEG---MVEKTLEVVESMKNAELNISDCISCVIVNGFSKR----RAYWAAVKVYEQL 191 (343)
Q Consensus 126 -------~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~ 191 (343)
...++..+..|...|...| +.++|++.|++..+.+. ++...+..+...|... +++++|...|++.
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 1123336677777777777 77888888888777775 4444445555555443 6778888888887
Q ss_pred HHcCCCCCHhhHHHHHHH-H--HccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccC-----ChHHHHHHHHHHhh
Q 044084 192 ISQGCIPGQVTYASIINA-Y--CRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG-----RIRDAMRLVAKMKP 263 (343)
Q Consensus 192 ~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~m~~ 263 (343)
. .| +...+..+... + ...+++++|...|+...+.| +...+..|...|. .| ++++|...|++..
T Consensus 244 a-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 244 A-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp G-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred c-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 6 33 33445555554 3 45778888888888877766 5566666666666 44 7888888888777
Q ss_pred CCCCchHHHHHHHHHHHhc----ccChhHHHh-------------HHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 044084 264 KGCEPNVWIYNSLMDMHGR----AKNLRQLEK-------------YTTVISAYNM----AREFDMCVKFYNEFRMNGG 320 (343)
Q Consensus 264 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~-------------~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 320 (343)
.| +......|...|.. ..+.++|.. ...+...|.. ..++++|..+|+...+.|.
T Consensus 315 ~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 32 44555555555554 235666655 4445555543 3577778887777777664
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=1.8e-12 Score=111.46 Aligned_cols=272 Identities=15% Similarity=0.138 Sum_probs=168.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcH---HHHHHHHHHHHhcCCCCChHhHHHHHH
Q 044084 27 QIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRA---FEILKFFRDMKEKGILEDPSVYASLIC 103 (343)
Q Consensus 27 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (343)
.+...+.+.|++++|.++|++..+.+.. .++..|...+...|++ ++|+++|++..+. ++..+..+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~------~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~ 77 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYS------EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC------TGGGTCC--------------------------------CHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCH------HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHH
Confidence 3667788999999999999999877632 2456677777778888 9999999998754 5555666666
Q ss_pred HHhccc-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc---------------------------------
Q 044084 104 SFASIA-----EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM--------------------------------- 145 (343)
Q Consensus 104 ~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------------------- 145 (343)
.+...+ +.++|...|++..+.|.. + .+..|...|...+.
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQ 154 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 444444 789999999999887643 2 44444444444333
Q ss_pred --HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC---cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc----CCh
Q 044084 146 --VEKTLEVVESMKNAELNISDCISCVIVNGFSKRR---AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI----GLY 216 (343)
Q Consensus 146 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~ 216 (343)
++++......+.+.-...+...+..+...|...| ++++|.+.|++..+.| .++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 2222222111111111123336777888888888 8999999999998887 45555556666777554 689
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHH-H--HccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhccc-----ChhH
Q 044084 217 SKAEKVFIEMQQKGFDKCVVAYSSMVAM-Y--GKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK-----NLRQ 288 (343)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~ 288 (343)
++|...|+... . -++..+..+... + ...+++++|...|++..+.| +...+..|...|. .| +.++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999877 3 356677777776 4 56889999999999998876 5556666666666 44 7777
Q ss_pred HHh------------HHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 044084 289 LEK------------YTTVISAYNM----AREFDMCVKFYNEFRMNGG 320 (343)
Q Consensus 289 a~~------------~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 320 (343)
|.. +..+...|.. ..++++|..+|++..+.|.
T Consensus 306 A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 306 AEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 766 4455566655 3489999999999888764
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=6.2e-13 Score=108.46 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=120.1
Q ss_pred CCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc-------CCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHc----
Q 044084 56 TPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK-------GILEDPSVYASLICSFASIAEVKVAEELFKEAEEK---- 124 (343)
Q Consensus 56 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 124 (343)
+|....++..+...+...|++++|+.+++++.+. .......++..+...+...|++++|...+++..+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3555678888888888889999999888888763 12223456777778888888888888888877764
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc------CC-CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 125 --GM-LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNA------EL-NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 125 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
+. .....++..+...|...|++++|...+++..+. +. +.....+..+...+...|++++|...++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 21 123566777888888888888888888877653 11 123345667777777788888888888777654
Q ss_pred ------CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 195 ------GCIP-GQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 195 ------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
+..| ...++..+...|...|++++|...++.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 234566667777777777777777777665
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=3.4e-12 Score=107.53 Aligned_cols=233 Identities=9% Similarity=-0.033 Sum_probs=159.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC--CCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCC-CC-----ChHhHH
Q 044084 28 IMEAFYKIGDSEKVAALFLECESRKL--DLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGI-LE-----DPSVYA 99 (343)
Q Consensus 28 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~-----~~~~~~ 99 (343)
....+...|++++|...|++..+.-. ..++....+|..+...+...|+++.|+..+++..+... .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55667788999999999988865411 11122356788888888899999999988888765311 11 134677
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHh-----cCCCCchhhHH
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEKGML-RD----LEVFLKLVLMYIEEGMVEKTLEVVESMKN-----AELNISDCISC 169 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 169 (343)
.+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|++.+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7778888888899888888877653211 11 34677888888888888888888888765 22123355677
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHc----CCCCCHhhHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCc-ChhhHHHH
Q 044084 170 VIVNGFSKRRAYWAAVKVYEQLISQ----GCIPGQVTYASIINAYCRIGL---YSKAEKVFIEMQQKGFDK-CVVAYSSM 241 (343)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 241 (343)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..+++.. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888888888888888887653 111122335566677777787 55566555544 2222 23466678
Q ss_pred HHHHHccCChHHHHHHHHHHhh
Q 044084 242 VAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888887754
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=2.5e-12 Score=115.92 Aligned_cols=168 Identities=10% Similarity=0.037 Sum_probs=99.6
Q ss_pred CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044084 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKL 136 (343)
Q Consensus 57 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (343)
|.+..+|+.|...+.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|...|++..+.... +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 444556666666666666666666666666554211 3455556666666666666666666666655432 45666666
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCh
Q 044084 137 VLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLY 216 (343)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 216 (343)
..+|.+.|++++|++.|++..+.++ -+...|..+..+|...|++++|++.|++..+.. +-+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 6666666666666666666655543 344556666666666666666666666666552 22345566666666666666
Q ss_pred hHHHHHHHHHHH
Q 044084 217 SKAEKVFIEMQQ 228 (343)
Q Consensus 217 ~~a~~~~~~~~~ 228 (343)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.50 E-value=1.1e-11 Score=104.32 Aligned_cols=298 Identities=13% Similarity=0.047 Sum_probs=197.2
Q ss_pred CCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCC--CCCCCchHHHHHHHHHHh--hccCc---------HHHHHHHH
Q 044084 19 VLDSGCYCQIMEAF--YKIGDSEKVAALFLECESRK--LDLTPSSTHMYKILCDSL--GKSGR---------AFEILKFF 83 (343)
Q Consensus 19 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~li~~~--~~~~~---------~~~a~~~~ 83 (343)
.|+..+-+.|-..| .+.+++++|..+++++.... ...++. ...|-.++..- ...+. .....+.+
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~-~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQD-LLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHH-HHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 45566666666666 78899999999999876532 222221 33334333321 11111 12222555
Q ss_pred HHHHhcCCCCCh--H--hHHHHHHHHhcccCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCcHhHHHHHHH
Q 044084 84 RDMKEKGILEDP--S--VYASLICSFASIAEVKVAEELFKEAEEKGML-R----DLEVFLKLVLMYIEEGMVEKTLEVVE 154 (343)
Q Consensus 84 ~~~~~~~~~~~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (343)
+.+.....+.+. . .+......+...|++++|...+++..+.... + ...++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 555432111111 1 1223345567889999999999998764211 2 25678888999999999999999998
Q ss_pred HHHhcCC-----CC-chhhHHHHHHHHhcCCcHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHccCChhHHHHHH
Q 044084 155 SMKNAEL-----NI-SDCISCVIVNGFSKRRAYWAAVKVYEQLISQ----GCIP-GQVTYASIINAYCRIGLYSKAEKVF 223 (343)
Q Consensus 155 ~~~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 223 (343)
+..+... .+ ...+++.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8764311 11 2346778888999999999999999887653 1111 2346777888899999999999999
Q ss_pred HHHHHc----CCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC----CCCchHHHHHHHHHHHhcccC---hhHHHh-
Q 044084 224 IEMQQK----GFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK----GCEPNVWIYNSLMDMHGRAKN---LRQLEK- 291 (343)
Q Consensus 224 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~~~---~~~a~~- 291 (343)
++..+. +.+....++..+...|.+.|++++|...+++..+. +.......+..+...+...++ ..+|..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 988762 22334677888999999999999999999988753 122233445555556666666 444443
Q ss_pred -------------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 292 -------------YTTVISAYNMAREFDMCVKFYNEFRM 317 (343)
Q Consensus 292 -------------~~~l~~~~~~~g~~~~a~~~~~~m~~ 317 (343)
+..+...|...|++++|...|++..+
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66788888899999999999888754
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.49 E-value=2.3e-11 Score=102.00 Aligned_cols=296 Identities=7% Similarity=-0.084 Sum_probs=185.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCC-CCCh----Hh
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPS-STHMYKILCDSLGKSGRAFEILKFFRDMKEKGI-LEDP----SV 97 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~ 97 (343)
........+...|++++|...+++........++. ...+++.+...+...|++++|.+.+++...... .++. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45555667778888888888888876654222211 123577777888888888888888887765311 1121 23
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC----chh
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEK----GML--R-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNI----SDC 166 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 166 (343)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 455667778888888888888877653 211 2 23456667778888888888888888876543211 123
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCH-hhHH-----HHHHHHHccCChhHHHHHHHHHHHcCCCc---Chhh
Q 044084 167 ISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQ-VTYA-----SIINAYCRIGLYSKAEKVFIEMQQKGFDK---CVVA 237 (343)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 237 (343)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5667777788888888888888887654211111 1111 22334667888888888887766543211 1224
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhC----CCCchH-HHHHHHHHHHhcccChhHHHh-HHHHHHHHHhcC-------C
Q 044084 238 YSSMVAMYGKTGRIRDAMRLVAKMKPK----GCEPNV-WIYNSLMDMHGRAKNLRQLEK-YTTVISAYNMAR-------E 304 (343)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~-~~~l~~~~~~~g-------~ 304 (343)
+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|.. +...+......| .
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~ 335 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 335 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHc
Confidence 566777888888888888888776542 222233 256666777888888888877 333333322221 1
Q ss_pred HHHHHHHHHHHHhCC
Q 044084 305 FDMCVKFYNEFRMNG 319 (343)
Q Consensus 305 ~~~a~~~~~~m~~~~ 319 (343)
.+....+++.+....
T Consensus 336 g~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 336 GEAMAQQLRQLIQLN 350 (373)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhCC
Confidence 145666777776654
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=8.8e-12 Score=93.30 Aligned_cols=160 Identities=11% Similarity=0.071 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHH
Q 044084 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICS 104 (343)
Q Consensus 25 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (343)
+..+...+...|++++|...++++.+.. |.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD----AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC----ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3344444444444444444444433221 1123344444444444444444444444444331 1123333334444
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (343)
+...|++++|...++++.+... .+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 4444444444444444443322 1333444444444444444444444444333322 2223333333344444444444
Q ss_pred HHHHHHH
Q 044084 185 VKVYEQL 191 (343)
Q Consensus 185 ~~~~~~~ 191 (343)
...+++.
T Consensus 164 ~~~~~~~ 170 (186)
T 3as5_A 164 LPHFKKA 170 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=5.4e-12 Score=94.48 Aligned_cols=166 Identities=14% Similarity=0.128 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
...|..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+... .+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3556667777777778888877777766543 22456666677777777777777777777776543 256677777777
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHH
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKA 219 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 219 (343)
+...|++++|.+.++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777777766543 345556666666667777777777777666553 23445566666666666666666
Q ss_pred HHHHHHHHHc
Q 044084 220 EKVFIEMQQK 229 (343)
Q Consensus 220 ~~~~~~~~~~ 229 (343)
...++...+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666666554
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=1.4e-10 Score=97.18 Aligned_cols=256 Identities=10% Similarity=-0.035 Sum_probs=182.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChH----hHHHHHHHHhcccCHHHHHHHHHHHHHcCCC-CC----HHH
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPS----VYASLICSFASIAEVKVAEELFKEAEEKGML-RD----LEV 132 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 132 (343)
........+...|++++|...+++........+.. ++..+...+...|+++.|...+++....... .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445566778999999999999988764222222 4556667788899999999999987763211 12 234
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhc----CCC--C-chhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCC--C--CHh
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNA----ELN--I-SDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCI--P--GQV 201 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p--~~~ 201 (343)
+..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 677888899999999999999987643 221 2 2345667788899999999999999998765321 1 234
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCcC-hhhHH-----HHHHHHHccCChHHHHHHHHHHhhCCCCc---hHHH
Q 044084 202 TYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC-VVAYS-----SMVAMYGKTGRIRDAMRLVAKMKPKGCEP---NVWI 272 (343)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~ 272 (343)
++..+...+...|++++|...++........++ ...+. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 577788889999999999999999876421211 11222 23345779999999999999988653221 1335
Q ss_pred HHHHHHHHhcccChhHHHh---------------------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 273 YNSLMDMHGRAKNLRQLEK---------------------YTTVISAYNMAREFDMCVKFYNEFRM 317 (343)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~---------------------~~~l~~~~~~~g~~~~a~~~~~~m~~ 317 (343)
+..+...+...|++++|.. +..+..++...|+.++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6677788888899888866 33446667788999999998888754
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=3.4e-12 Score=115.05 Aligned_cols=166 Identities=11% Similarity=0.103 Sum_probs=148.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
+..+|+.|...+.+.|++++|++.|++..+.. |....+|+.+..++.+.|++++|++.|++..+.... +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 46789999999999999999999999998765 344689999999999999999999999999887432 5778999
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (343)
+..++...|++++|.+.|++..+.... +...|+.+...|.+.|++++|++.|++..+..+ -+...+..+..++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhccc
Confidence 999999999999999999999997654 789999999999999999999999999998775 456789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 044084 181 YWAAVKVYEQLIS 193 (343)
Q Consensus 181 ~~~a~~~~~~~~~ 193 (343)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888764
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=7.7e-11 Score=91.63 Aligned_cols=196 Identities=12% Similarity=0.033 Sum_probs=98.9
Q ss_pred ChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHH
Q 044084 94 DPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVN 173 (343)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (343)
|+..+......+...|++++|...|++..+....++...+..+..++...|++++|+..|++..+..+ .+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 34455555555666666666666666666554434555555556666666666666666666555443 23445555555
Q ss_pred HHhcCCcHHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc--ChhhHHHHHHH
Q 044084 174 GFSKRRAYWAAVKVYEQLISQGCIPGQ-------VTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK--CVVAYSSMVAM 244 (343)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 244 (343)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|+...+.. +. +...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 5666666666666666555542 1122 224444444455555555555555554432 11 23344444444
Q ss_pred HHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044084 245 YGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNG 319 (343)
Q Consensus 245 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 319 (343)
|...| ...++++...+. .+...+. .. .....+.+++|+..+++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~-------------------~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYA-------------------SE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHH-------------------HH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHH-------------------HH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 43222 222233332211 1111111 11 1223466789999999998864
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=1.2e-11 Score=104.05 Aligned_cols=233 Identities=8% Similarity=-0.057 Sum_probs=165.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCC-----CC-ChHhH
Q 044084 27 QIMEAFYKIGDSEKVAALFLECESRKL--DLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGI-----LE-DPSVY 98 (343)
Q Consensus 27 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 98 (343)
.....+...|++++|...|++..+... ...+....++..+...+...|+++.|+..+++..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345567788999999999998865422 21223356788888999999999999999988765311 11 23467
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh-----cCCCCchhhH
Q 044084 99 ASLICSFASIAEVKVAEELFKEAEEK----GML-RDLEVFLKLVLMYIEEGMVEKTLEVVESMKN-----AELNISDCIS 168 (343)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 168 (343)
+.+...+...|++++|...+++..+. +.. ....++..+...|...|++++|++.|++... ..+ ....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHH
Confidence 77888889999999999998887763 111 1245678888899999999999999988766 333 335667
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHcCC----CCCHhhHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCc-ChhhHHH
Q 044084 169 CVIVNGFSKRRAYWAAVKVYEQLISQGC----IPGQVTYASIINAYCRIGL---YSKAEKVFIEMQQKGFDK-CVVAYSS 240 (343)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~ 240 (343)
..+...+...|++++|...+++..+... +.....+..+...+...++ +.+|...++. .+..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 7888889999999999999998876521 1122345555556667777 6666666554 22222 2345667
Q ss_pred HHHHHHccCChHHHHHHHHHHhh
Q 044084 241 MVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
+...|...|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888899999999988888764
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=3.1e-11 Score=93.85 Aligned_cols=150 Identities=9% Similarity=-0.052 Sum_probs=86.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
|+..+......+.+.|++++|...|++..+....++ ...+..+..++...|++++|++.|++..+.... +...+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 81 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIG 81 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHH
Confidence 455666666666666777777777766665543222 344555666666666666666666666654321 3445666
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC--chhhHHHH
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDL-------EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNI--SDCISCVI 171 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 171 (343)
+...+...|++++|...+++..+..+. +. .+|..+...+...|++++|++.|++..+.++ . +...+..+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l 159 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHH
Confidence 666666666666666666666665432 33 3455555666666666666666666655432 1 23344444
Q ss_pred HHHHh
Q 044084 172 VNGFS 176 (343)
Q Consensus 172 ~~~~~ 176 (343)
..++.
T Consensus 160 ~~~~~ 164 (228)
T 4i17_A 160 GVLFY 164 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.44 E-value=1.4e-12 Score=104.71 Aligned_cols=227 Identities=12% Similarity=0.019 Sum_probs=155.4
Q ss_pred chhhHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCCchHHHHHHHHHHh
Q 044084 2 NSQSKLHYYEKMKS-------AGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRK----LDLTPSSTHMYKILCDSL 70 (343)
Q Consensus 2 ~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~li~~~ 70 (343)
++++|+..|++..+ .+.+....++..+...+...|++++|...++++.+.. ...++....++..+...+
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 44555555555544 2333356788999999999999999999999886541 012244467899999999
Q ss_pred hccCcHHHHHHHHHHHHhc------CC-CCChHhHHHHHHHHhcccCHHHHHHHHHHHHHc------CCCC-CHHHHHHH
Q 044084 71 GKSGRAFEILKFFRDMKEK------GI-LEDPSVYASLICSFASIAEVKVAEELFKEAEEK------GMLR-DLEVFLKL 136 (343)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 136 (343)
...|++++|++.+++.... .. +....++..+...+...|++++|...+++..+. +..| ...++..+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999998764 11 223567888889999999999999999998875 1122 46778899
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhc-------CCCCc-hhhHHHHHHHHhcCCc------HHHHHHHHHHHHHcCCCCCHhh
Q 044084 137 VLMYIEEGMVEKTLEVVESMKNA-------ELNIS-DCISCVIVNGFSKRRA------YWAAVKVYEQLISQGCIPGQVT 202 (343)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~p~~~~ 202 (343)
...|...|++++|...+++..+. ...+. ...|..+...+...+. +..+...++..... .+....+
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 254 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTT 254 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 99999999999999999988653 11122 2234333333333222 22222222222111 1223457
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 203 YASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
+..+...|...|++++|..+++...+.
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788899999999999999999987753
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=5.5e-12 Score=101.22 Aligned_cols=230 Identities=13% Similarity=0.062 Sum_probs=148.4
Q ss_pred HhcCCHHHHHHHHHHHHhCC----CCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc------CCCC-ChHhHHHH
Q 044084 33 YKIGDSEKVAALFLECESRK----LDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK------GILE-DPSVYASL 101 (343)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 101 (343)
...|++++|...|++..+.- ....|....++..+...+...|++++|+..+++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 35567777777776654421 1112344678888889999999999999999888754 2122 34567788
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcC-----C--CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc------C-CCCchhh
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKG-----M--LRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNA------E-LNISDCI 167 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 167 (343)
...+...|++++|...+.+..+.. . +....++..+...|...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 888889999999999988887641 1 124667888888889999999999999887654 1 1123456
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHc-------CCCCCHh-hHHHHHHHHHccCChhHHHHHHHHHHH----c--CCCc
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLISQ-------GCIPGQV-TYASIINAYCRIGLYSKAEKVFIEMQQ----K--GFDK 233 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~----~--~~~~ 233 (343)
+..+...+...|++++|...+++..+. ...+... .+..+...+...+....+.. +..... . ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 778888888889999999998887753 1223322 23333333333333222222 111111 1 1122
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 234 CVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
...++..+...|...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888888999999888888765
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=1.4e-10 Score=93.84 Aligned_cols=239 Identities=12% Similarity=0.021 Sum_probs=163.8
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--C-CHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHH
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKI--G-DSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEIL 80 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 80 (343)
.+|.+++.+..+. .+++...| .+ + +. + ++++|...|++. ...+...|++++|.
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a------------------~~~~~~~g~~~~A~ 57 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA------------------ATIYRLRKELNLAG 57 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH------------------HHHHHHTTCTHHHH
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH------------------HHHHHHcCCHHHHH
Confidence 4577777777765 22222223 22 2 32 2 478888777665 33456788899999
Q ss_pred HHHHHHHhc----CCCCC-hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhc-CcHhHH
Q 044084 81 KFFRDMKEK----GILED-PSVYASLICSFASIAEVKVAEELFKEAEEKGMLR-D----LEVFLKLVLMYIEE-GMVEKT 149 (343)
Q Consensus 81 ~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a 149 (343)
+.|++.... |-.++ ..+|+.+..+|.+.|++++|...+++..+..... + ..+++.+...|... |++++|
T Consensus 58 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A 137 (292)
T 1qqe_A 58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA 137 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 888877653 22222 4578888889999999999999888877632111 1 45788899999996 999999
Q ss_pred HHHHHHHHhcCCCC-c----hhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCH------hhHHHHHHHHHccCChhH
Q 044084 150 LEVVESMKNAELNI-S----DCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQ------VTYASIINAYCRIGLYSK 218 (343)
Q Consensus 150 ~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~~~~~ 218 (343)
+..|++..+..... + ..++..+...+...|++++|...|++..+....... ..+..+..++...|++++
T Consensus 138 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 217 (292)
T 1qqe_A 138 IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA 217 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999876543211 1 346788889999999999999999999886422221 146677788889999999
Q ss_pred HHHHHHHHHHcCCCcC------hhhHHHHHHHHH--ccCChHHHHHHHHHHhhCCCCchH
Q 044084 219 AEKVFIEMQQKGFDKC------VVAYSSMVAMYG--KTGRIRDAMRLVAKMKPKGCEPNV 270 (343)
Q Consensus 219 a~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~~p~~ 270 (343)
|...|+...+.. |+ ...+..++..+. ..+++++|+..|+++... .|+.
T Consensus 218 A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l--~~~~ 273 (292)
T 1qqe_A 218 AARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL--DKWK 273 (292)
T ss_dssp HHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC--CHHH
T ss_pred HHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc--HHHH
Confidence 999999877642 32 123445566664 456788899988887653 4444
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=4.2e-10 Score=89.40 Aligned_cols=105 Identities=9% Similarity=0.011 Sum_probs=70.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCC-CC-hHhH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGIL-ED-PSVY 98 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~ 98 (343)
+...+-.+...+.+.|++++|...|+.+.+..... +....++..+..++.+.|++++|+..|++..+.... |. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566667777778888888888888877654322 111456777777788888888888888887775321 11 3345
Q ss_pred HHHHHHHhc--------ccCHHHHHHHHHHHHHcCC
Q 044084 99 ASLICSFAS--------IAEVKVAEELFKEAEEKGM 126 (343)
Q Consensus 99 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~ 126 (343)
..+..++.. .|++++|...|+++.+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 556666666 7778888888877777543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=4.5e-10 Score=90.77 Aligned_cols=200 Identities=12% Similarity=0.101 Sum_probs=139.6
Q ss_pred cHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCcHhHH
Q 044084 75 RAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEK----GMLR-DLEVFLKLVLMYIEEGMVEKT 149 (343)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 149 (343)
++++|.+.|++. ...+...|++++|...|.+..+. |..+ ...+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 588888888776 33566788899998888877653 2211 256788889999999999999
Q ss_pred HHHHHHHHhcCCC---C--chhhHHHHHHHHhcC-CcHHHHHHHHHHHHHcCC---CC-C-HhhHHHHHHHHHccCChhH
Q 044084 150 LEVVESMKNAELN---I--SDCISCVIVNGFSKR-RAYWAAVKVYEQLISQGC---IP-G-QVTYASIINAYCRIGLYSK 218 (343)
Q Consensus 150 ~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~p-~-~~~~~~ll~~~~~~~~~~~ 218 (343)
+..|++..+.... + -..+++.+...|... |++++|...|++..+... .+ . ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988887643211 1 134677888888886 999999999988776411 01 1 3467788888999999999
Q ss_pred HHHHHHHHHHcCCCcCh------hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchH------HHHHHHHHHHh--ccc
Q 044084 219 AEKVFIEMQQKGFDKCV------VAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNV------WIYNSLMDMHG--RAK 284 (343)
Q Consensus 219 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~--~~~ 284 (343)
|...|+...+....... ..|..+..++...|++++|...|++..+. .|+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999988876432221 14677778888899999999999988764 3332 23445566664 445
Q ss_pred ChhHHHh
Q 044084 285 NLRQLEK 291 (343)
Q Consensus 285 ~~~~a~~ 291 (343)
++++|..
T Consensus 255 ~~~~A~~ 261 (292)
T 1qqe_A 255 QLSEHCK 261 (292)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 6766665
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=6.9e-10 Score=88.12 Aligned_cols=188 Identities=13% Similarity=0.073 Sum_probs=117.0
Q ss_pred CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC-C-CHH
Q 044084 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILED---PSVYASLICSFASIAEVKVAEELFKEAEEKGML-R-DLE 131 (343)
Q Consensus 57 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~ 131 (343)
+.+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|++..+..+. | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 344567777888889999999999999999886422 2 556777888899999999999999999886532 2 256
Q ss_pred HHHHHHHHHHh--------cCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhH
Q 044084 132 VFLKLVLMYIE--------EGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTY 203 (343)
Q Consensus 132 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 203 (343)
.+..+..++.. .|++++|+..|+++....+. +......+.. +..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 67778888888 89999999999988876542 2222221100 0000000 00113
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCc--ChhhHHHHHHHHHcc----------CChHHHHHHHHHHhhC
Q 044084 204 ASIINAYCRIGLYSKAEKVFIEMQQKGFDK--CVVAYSSMVAMYGKT----------GRIRDAMRLVAKMKPK 264 (343)
Q Consensus 204 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~ 264 (343)
..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 344455555666666666666655543111 123444555555544 5556666666666553
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=9.1e-10 Score=87.81 Aligned_cols=144 Identities=12% Similarity=0.109 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 044084 79 ILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGM-LRDLEVFLKLVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
++..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 23333334445555555555555555555544332 1134445555555555555555555555554
Q ss_pred hcCCCC-----chhhHHHHHHHHh----cCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044084 158 NAELNI-----SDCISCVIVNGFS----KRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQ 227 (343)
Q Consensus 158 ~~~~~~-----~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 227 (343)
+.. | +..+...++.+++ ..+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|+..++.+.
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 2 1223333333311 122555555555555443 2332222333335555555555555555443
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=6.8e-10 Score=78.10 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=46.2
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044084 65 ILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144 (343)
Q Consensus 65 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (343)
.+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++.+.+. .+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhc
Confidence 333333344444444444444333211 1223333333333334444444444444333321 12333333444444444
Q ss_pred cHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHH
Q 044084 145 MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQL 191 (343)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (343)
++++|.+.++++....+ .+...+..+...+...|++++|...++++
T Consensus 84 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 44444444444333322 12223333333344444444444444433
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=8.6e-10 Score=77.56 Aligned_cols=128 Identities=17% Similarity=0.215 Sum_probs=70.0
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (343)
|..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++...+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 444555555666666666666666554432 455555566666666666666666666555443 233445555555555
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 178 RRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 566666665555555442 22344444555555555555555555555544
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.25 E-value=2.8e-08 Score=80.01 Aligned_cols=223 Identities=8% Similarity=0.025 Sum_probs=177.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccC--cHHHHHHHHHHHHhcCCCCChHhHHHHHHHH----hc
Q 044084 34 KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSG--RAFEILKFFRDMKEKGILEDPSVYASLICSF----AS 107 (343)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 107 (343)
+....++|+++++.+...+ |....+|+.--..+...+ ++++++++++.+.....+ +..+|+.--..+ ..
T Consensus 45 ~~e~s~~aL~~t~~~L~~n----P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 45 AEEYSERALHITELGINEL----ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC----cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 3344579999999998876 334688998888888888 999999999999987544 555666544444 44
Q ss_pred c---cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc--
Q 044084 108 I---AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVE--KTLEVVESMKNAELNISDCISCVIVNGFSKRRA-- 180 (343)
Q Consensus 108 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 180 (343)
. +++++++.+++.+.+..++ +..+|+.-...+.+.|+++ ++++.++++.+.++ -|...|+.-...+...+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 4 7899999999999998765 8999999988899999988 99999999999887 577788877777777776
Q ss_pred ----HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhH-HHHHHHHHHHcC--CCcChhhHHHHHHHHHccCChHH
Q 044084 181 ----YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSK-AEKVFIEMQQKG--FDKCVVAYSSMVAMYGKTGRIRD 253 (343)
Q Consensus 181 ----~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 253 (343)
++++++.++++.... +-|...|+-.-..+.+.|+... +..+...+.+.+ -+.+...+..+...|.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 899999999998875 4577888888888888777444 555666555432 13467888999999999999999
Q ss_pred HHHHHHHHhhC
Q 044084 254 AMRLVAKMKPK 264 (343)
Q Consensus 254 a~~~~~~m~~~ 264 (343)
|.++++.+.+.
T Consensus 277 A~~~~~~l~~~ 287 (306)
T 3dra_A 277 SRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.25 E-value=9.7e-10 Score=84.07 Aligned_cols=178 Identities=15% Similarity=0.066 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHH
Q 044084 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICS 104 (343)
Q Consensus 25 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (343)
+......+.+.|++++|...|++..+.. |.+...|... ..... ..........+..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~--~~~~~-----------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN----IDRTEMYYWT--NVDKN-----------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----HHHHHHHHHH--HSCTT-----------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHh--hhcch-----------------hhhhHHHHHHHHHH
Confidence 3344556667788888888887776644 3333444440 00000 00001111224445
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc--HH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA--YW 182 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 182 (343)
+.+.|++++|...+++..+..+. +...+..+...+...|++++|+..|++..+.++ .+..++..+...|...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHH
Confidence 55555555555555555554432 455555555555555555555555555555443 233444444444433332 22
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 183 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
.+...++.... ..|....+.....++...|++++|...|++..+.
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33333333321 1122222222333344455555555555555543
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.25 E-value=7.3e-10 Score=84.76 Aligned_cols=139 Identities=14% Similarity=0.000 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 212 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 212 (343)
...+...|.+.|++++|+..|++..+..+ -+...+..+..++...|++++|...|++..+.. +.+...+..+..+|..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34588999999999999999999998875 467789999999999999999999999999874 3456778888877766
Q ss_pred cCC--hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHH
Q 044084 213 IGL--YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLM 277 (343)
Q Consensus 213 ~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 277 (343)
.|+ .+.+...+..... ..|....+.....++...|++++|...|++.++. .|+......+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 554 3445555555432 2333334555566777789999999999999975 67765544443
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.24 E-value=5.6e-09 Score=80.02 Aligned_cols=177 Identities=14% Similarity=0.079 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccC----cHHHH
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSG----RAFEI 79 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a 79 (343)
.+|++.|++..+.| +...+..+...|...+++++|.+.|++..+.+. ..++..|...|.. + ++++|
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~------~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD------GDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHTTS-STTSCCHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHc-CCCCCCHHHH
Confidence 46888888888864 567788888888888999999999988877652 4567778888877 6 78888
Q ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHhc----ccCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCcHhHHH
Q 044084 80 LKFFRDMKEKGILEDPSVYASLICSFAS----IAEVKVAEELFKEAEEKGML-RDLEVFLKLVLMYIE----EGMVEKTL 150 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~ 150 (343)
+++|++..+.| +...+..|...|.. .+++++|...|++..+.|.. .++..+..|...|.. .+++++|+
T Consensus 73 ~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 73 RQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 88888887754 56667777777776 77888888888888876631 026777788888877 77788888
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHhcC------CcHHHHHHHHHHHHHcC
Q 044084 151 EVVESMKNAELNISDCISCVIVNGFSKR------RAYWAAVKVYEQLISQG 195 (343)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~ 195 (343)
..|++..+.+ .+...+..+...|... .++++|...|++..+.|
T Consensus 150 ~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8888877652 2233455566665432 27788888888777766
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=3.6e-09 Score=84.37 Aligned_cols=210 Identities=10% Similarity=0.024 Sum_probs=144.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (343)
++...-.|++..++.- ..+. .+..+ ...-.-+.+++...|++... ....|....+..+.. |...
T Consensus 20 ikn~fy~G~yq~~i~e---~~~~--~~~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~ 83 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQE---IEKF--SKVTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDT 83 (310)
T ss_dssp HHHHHTTTCHHHHTHH---HHTS--SCCCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTT
T ss_pred HHHHHHhhHHHHHHHH---HHhc--Cccch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhcc
Confidence 4455567888888873 3322 22222 23333456778777776632 122344334443333 3332
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC-CCchhhHHHHHHHHhcCCcHHHHHHH
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL-NISDCISCVIVNGFSKRRAYWAAVKV 187 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (343)
+ +...+++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+++.|.+.
T Consensus 84 ~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 84 K----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp T----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 677777777655 35666677889999999999999999999876664 23556788889999999999999999
Q ss_pred HHHHHHcCCCC-----CHhhHHHHHHHHH--ccC--ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHH
Q 044084 188 YEQLISQGCIP-----GQVTYASIINAYC--RIG--LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLV 258 (343)
Q Consensus 188 ~~~~~~~~~~p-----~~~~~~~ll~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (343)
+++|.+. .| +..+...+..++. ..| +..+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.+
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 9999886 56 3566666776633 334 8999999999987653 54333344455899999999999999
Q ss_pred HHHhh
Q 044084 259 AKMKP 263 (343)
Q Consensus 259 ~~m~~ 263 (343)
+.+.+
T Consensus 235 ~~l~~ 239 (310)
T 3mv2_B 235 ELLLS 239 (310)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 97665
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=4.4e-10 Score=101.61 Aligned_cols=186 Identities=11% Similarity=-0.000 Sum_probs=142.7
Q ss_pred hccCcHHHHHHHHHHHH--------hcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044084 71 GKSGRAFEILKFFRDMK--------EKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142 (343)
Q Consensus 71 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (343)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++++.+.... +...|..+...|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888999999999887 332 335667888888889999999999999998887643 78888899999999
Q ss_pred cCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHH
Q 044084 143 EGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKV 222 (343)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 222 (343)
.|++++|++.|++..+..+ .+...|..+..++...|++++ .+.|++..+.. +.+...+..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999888765 456678888888999999999 99999988764 34567788888899999999999999
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHccCC--------hHHHHHHHHHHh
Q 044084 223 FIEMQQKGFDKCVVAYSSMVAMYGKTGR--------IRDAMRLVAKMK 262 (343)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~m~ 262 (343)
|++..+.+ +-+...+..+..++...++ +++|.+.+..+.
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 98887764 2345677777777766444 445555554443
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.19 E-value=3.1e-10 Score=81.91 Aligned_cols=141 Identities=11% Similarity=-0.022 Sum_probs=68.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC
Q 044084 31 AFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE 110 (343)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (343)
.+...|++++|+..+...... +|.....+..+...|.+.|++++|++.|++..+.... +..+|..+..++...|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 334445555555555544222 1222333444555555555555555555555554321 34455555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHH-HHHHHhcCCCCchhhHHHHHHHHhcC
Q 044084 111 VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEV-VESMKNAELNISDCISCVIVNGFSKR 178 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (343)
+++|...|++..+..+. +..++..+...|.+.|++++|.+. +++..+..+ -+..+|......+...
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHh
Confidence 55555555555554432 455555555555555555544433 344444433 2333444444443333
No 99
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=1.7e-07 Score=83.80 Aligned_cols=150 Identities=11% Similarity=0.079 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCc---HHHHH
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGR---AFEIL 80 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~ 80 (343)
.+.+..|++.+..++ -|...|..++..+.+.+.++.+..+|+.+...- |.....|...+..-.+.+. ++.+.
T Consensus 49 ~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f----P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF----PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp SCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 344555666666554 577888888888888888888888888887764 2225678777777777777 88888
Q ss_pred HHHHHHHhcC-CCCChHhHHHHHHHHhcccCH--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHHh------
Q 044084 81 KFFRDMKEKG-ILEDPSVYASLICSFASIAEV--------KVAEELFKEAEE-KGM-LR-DLEVFLKLVLMYIE------ 142 (343)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~------ 142 (343)
.+|++..... ..|+...|...+....+.++. +.+.++|+.... .|. .+ +...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 8888877753 136777777666554444332 334466666554 344 33 35667666654432
Q ss_pred ---cCcHhHHHHHHHHHHh
Q 044084 143 ---EGMVEKTLEVVESMKN 158 (343)
Q Consensus 143 ---~~~~~~a~~~~~~~~~ 158 (343)
.++++.+..+|++...
T Consensus 204 ~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 2345566666666553
No 100
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=1.6e-07 Score=84.09 Aligned_cols=84 Identities=13% Similarity=0.045 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCCCchHHHHHHHHHHhh
Q 044084 3 SQSKLHYYEKMKSAG-IVLDSGCYCQIMEAFYKIGDS--------EKVAALFLECES-RKL-DLTPSSTHMYKILCDSLG 71 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~~~~~~~~~~li~~~~ 71 (343)
.+.+..+|++..... .+|++..|...+....+.++. +.+.++|+.... .|. .+ .+...|...+....
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~--~s~~iW~~Yi~f~~ 196 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP--KSIQFWNEYLHFLE 196 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc--cchHHHHHHHHHHH
Confidence 677788888887754 136777777777766555543 334466666543 233 22 22457777665543
Q ss_pred c---------cCcHHHHHHHHHHHHh
Q 044084 72 K---------SGRAFEILKFFRDMKE 88 (343)
Q Consensus 72 ~---------~~~~~~a~~~~~~~~~ 88 (343)
. .++.+.+..+|++.+.
T Consensus 197 ~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 197 HWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred hccccCcHHHHhHHHHHHHHHHHHHh
Confidence 2 3346667777777764
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.19 E-value=8.4e-10 Score=99.80 Aligned_cols=177 Identities=8% Similarity=-0.082 Sum_probs=144.6
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc
Q 044084 33 YKIGDSEKVAALFLECESR----KLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108 (343)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (343)
...|++++|.+.+++.... ....+|.+...+..+...+...|++++|++.|++..+.+. -+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 7889999999999998711 1112233457899999999999999999999999988643 2677888899999999
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHH
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (343)
|++++|...|++..+..+. +...+..+..+|.+.|++++ ++.|++..+.++ .+...|..+..++...|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999997654 68889999999999999999 999999988776 46678999999999999999999999
Q ss_pred HHHHHcCCCCC-HhhHHHHHHHHHccCC
Q 044084 189 EQLISQGCIPG-QVTYASIINAYCRIGL 215 (343)
Q Consensus 189 ~~~~~~~~~p~-~~~~~~ll~~~~~~~~ 215 (343)
++..+. .|+ ...+..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 998876 354 4566677777766555
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.17 E-value=7.8e-09 Score=80.05 Aligned_cols=188 Identities=12% Similarity=-0.013 Sum_probs=114.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCCh--HhH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDP--SVY 98 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 98 (343)
+...+..+...+.+.|++++|...|+++.+..... +....++..+..++.+.|++++|+..|+++.+....... ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 34456666778888999999999999988754322 222357788888999999999999999998876422111 133
Q ss_pred HHHHHHHhc------------------ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 99 ASLICSFAS------------------IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 99 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
..+..++.. .|+.++|...|+++.+..+. +...+....... .+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~~--- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHHH---
Confidence 333444433 34555666666555554322 111111110000 0000000
Q ss_pred CCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 044084 161 LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQ----VTYASIINAYCRIGLYSKAEKVFIEMQQKG 230 (343)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (343)
.....+...+...|++++|...|+++.+.. |+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011245567777888888888888887762 332 456777788888888888888888877764
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=1.1e-09 Score=88.23 Aligned_cols=165 Identities=6% Similarity=0.001 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFL-KLVL 138 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 138 (343)
...+..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...++++.... |+..... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 456667777777888888888888887776322 45667777777888888888888887776653 3433322 2233
Q ss_pred HHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHccCChh
Q 044084 139 MYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCI-PGQVTYASIINAYCRIGLYS 217 (343)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~ 217 (343)
.+...++.++|...+++.....+ .+...+..+...+...|++++|...|.++.+.... .+...+..+...+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 35566777777888877777665 45667777778888888888888888887776321 12456777788888888888
Q ss_pred HHHHHHHHHHH
Q 044084 218 KAEKVFIEMQQ 228 (343)
Q Consensus 218 ~a~~~~~~~~~ 228 (343)
+|...+++...
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88777776543
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=4.9e-10 Score=83.30 Aligned_cols=162 Identities=11% Similarity=0.065 Sum_probs=100.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHH
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLIC 103 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (343)
.+..+...+.+.|++++|...|++..+.. |.+...+..+...+...|++++|+..+++..... |+...+..+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~ 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL----QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAK 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH----HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHH
Confidence 45566677778888888888887765433 3345677788888888888888888887776543 23333222211
Q ss_pred H-HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC-chhhHHHHHHHHhcCCcH
Q 044084 104 S-FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNI-SDCISCVIVNGFSKRRAY 181 (343)
Q Consensus 104 ~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 181 (343)
. +...+....+...+++..+..+. +...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 1 11212223356666666665432 56667777777777777777777777776655432 234566666666666777
Q ss_pred HHHHHHHHHHH
Q 044084 182 WAAVKVYEQLI 192 (343)
Q Consensus 182 ~~a~~~~~~~~ 192 (343)
++|...|++..
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666666544
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=9.1e-09 Score=78.85 Aligned_cols=175 Identities=14% Similarity=0.061 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----cHhHHHHHHH
Q 044084 79 ILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG----MVEKTLEVVE 154 (343)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 154 (343)
|++.|++..+.| ++..+..+...+...+++++|...|++..+.| ++..+..|...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444455444432 44445555555555555555555555555543 34455555555554 4 5555666555
Q ss_pred HHHhcCCCCchhhHHHHHHHHhc----CCcHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHc----cCChhHHHHHHHH
Q 044084 155 SMKNAELNISDCISCVIVNGFSK----RRAYWAAVKVYEQLISQGCI-PGQVTYASIINAYCR----IGLYSKAEKVFIE 225 (343)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~----~~~~~~a~~~~~~ 225 (343)
+..+.+ +...+..+...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|...|+.
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554443 22244444444544 55566666666665554311 013445555555554 4556666666666
Q ss_pred HHHcCCCcChhhHHHHHHHHHcc-C-----ChHHHHHHHHHHhhCC
Q 044084 226 MQQKGFDKCVVAYSSMVAMYGKT-G-----RIRDAMRLVAKMKPKG 265 (343)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~m~~~~ 265 (343)
..+. +.+...+..|...|..- | +.++|...|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5554 12334455555555432 2 5666666666665554
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=1.9e-09 Score=86.85 Aligned_cols=162 Identities=10% Similarity=0.022 Sum_probs=78.6
Q ss_pred HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchh-hHHHHHHH
Q 044084 96 SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDC-ISCVIVNG 174 (343)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 174 (343)
..+..+...+...|++++|...+++..+..+. +...+..+...+.+.|++++|...++++....+ +.. ........
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHHHH
Confidence 33444445555555555555555555554432 455555555555555555555555555544332 211 11111222
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc-ChhhHHHHHHHHHccCChHH
Q 044084 175 FSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK-CVVAYSSMVAMYGKTGRIRD 253 (343)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 253 (343)
+...++.+.|...+++..... +.+...+..+...+...|++++|...|..+.+..... +...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 334444444555555555442 2334445555555555555555555555555543111 13445555555555555555
Q ss_pred HHHHHHHH
Q 044084 254 AMRLVAKM 261 (343)
Q Consensus 254 a~~~~~~m 261 (343)
|...+++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=4.7e-10 Score=80.93 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=22.1
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 136 LVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
+...|.+.|++++|++.|++..+..+ -+..+|..+..++...|++++|...|++..+
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 33334444444444444444333332 2233333334444444444444444444333
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.14 E-value=4e-08 Score=79.04 Aligned_cols=231 Identities=6% Similarity=0.005 Sum_probs=179.5
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHh----hcc---
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIG--DSEKVAALFLECESRKLDLTPSSTHMYKILCDSL----GKS--- 73 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 73 (343)
.++|+.+++.++..++ -+...|+.-..++...+ ++++++++++.+...++.. ..+|+.-...+ ...
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~----y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN----YQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC----CHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc----HHHHHHHHHHHHHHHHhcccc
Confidence 3679999999998653 24556888888888888 9999999999998876443 46777655555 444
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc------
Q 044084 74 GRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVK--VAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM------ 145 (343)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 145 (343)
+++++++++++++.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.........++
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 7899999999999987544 7778888777777888888 999999999998765 88999988888877777
Q ss_pred HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHH-HHHHHHHHHHcC--CCCCHhhHHHHHHHHHccCChhHHHHH
Q 044084 146 VEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWA-AVKVYEQLISQG--CIPGQVTYASIINAYCRIGLYSKAEKV 222 (343)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 222 (343)
++++++.++++...++ -|...|+-+-..+.+.|.... +..+..++.+.+ -+.+...+..+...|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8999999999998877 677888888878877776443 555666655432 134667888899999999999999999
Q ss_pred HHHHHHc-CCCcChhhHHHHH
Q 044084 223 FIEMQQK-GFDKCVVAYSSMV 242 (343)
Q Consensus 223 ~~~~~~~-~~~~~~~~~~~l~ 242 (343)
++.+.+. + +.....|+..+
T Consensus 281 ~~~l~~~~D-pir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYN-PIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTC-GGGHHHHHHHH
T ss_pred HHHHHhccC-hHHHHHHHHHH
Confidence 9999873 3 33445555443
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=2.1e-08 Score=77.57 Aligned_cols=186 Identities=11% Similarity=0.015 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCC-C-ChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCC--HHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGIL-E-DPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD--LEVFLK 135 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 135 (343)
...+..+...+...|++++|+..|+++...... | ....+..+..++.+.|++++|...|+++.+..+... ...+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345666778888889999999999998875322 1 134677778888889999999999999888654321 124555
Q ss_pred HHHHHHh------------------cCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCC
Q 044084 136 LVLMYIE------------------EGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCI 197 (343)
Q Consensus 136 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (343)
+..++.. .|++++|+..|+++.+..+ -+...+.+.... ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l----------~~~~~~~~----- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRL----------VFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHH----------HHHHHHHH-----
Confidence 5555554 3445555555555554432 111111111000 00000000
Q ss_pred CCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc--ChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 198 PGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK--CVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 198 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
.....+...|.+.|++++|...|+.+.+..... ....+..+..+|.+.|+.++|.+.++.+...
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 011235567788899999999999988864111 1256788889999999999999999988776
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=3.3e-09 Score=94.11 Aligned_cols=153 Identities=10% Similarity=0.029 Sum_probs=95.7
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++++|+..|++..+... .+...+..+...+.+.|++++|.+.|++..+.. |.+..+|..+...+...|++++|.+
T Consensus 4 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH----PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677777777766542 346677777777777777777777777776654 2235677777777777777777777
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHh
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEE---GMVEKTLEVVESMKN 158 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 158 (343)
.+++..+... .+...+..+..++.+.|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 7777776532 24566777777777777777777777777776543 566777777777777 777777777777766
Q ss_pred cCC
Q 044084 159 AEL 161 (343)
Q Consensus 159 ~~~ 161 (343)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 654
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=3.5e-09 Score=93.93 Aligned_cols=154 Identities=14% Similarity=0.019 Sum_probs=111.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHH
Q 044084 35 IGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVA 114 (343)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 114 (343)
.|++++|.+.|++..+.. |.+...|..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR----PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 478888999888876654 33467888888999999999999999998887642 2567788888888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC---CcHHHHHHHHHHH
Q 044084 115 EELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR---RAYWAAVKVYEQL 191 (343)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~ 191 (343)
...+++..+.... +...+..+...|.+.|++++|.+.|++..+... .+...+..+..++... |++++|.+.+++.
T Consensus 77 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 77 AVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999988887643 678888889999999999999999998887765 4566778888888888 8999999999988
Q ss_pred HHcC
Q 044084 192 ISQG 195 (343)
Q Consensus 192 ~~~~ 195 (343)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 8774
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=1.1e-09 Score=81.40 Aligned_cols=156 Identities=10% Similarity=0.059 Sum_probs=67.7
Q ss_pred HHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHH-HhcCCc
Q 044084 102 ICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG-FSKRRA 180 (343)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 180 (343)
...+...|++++|...+++..+..+. +...+..+...+...|++++|+..|++.....+ +...+...... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcc
Confidence 33444445555555555444433221 344444455555555555555555544433322 11111111101 011111
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc-ChhhHHHHHHHHHccCChHHHHHHHH
Q 044084 181 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK-CVVAYSSMVAMYGKTGRIRDAMRLVA 259 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (343)
...+...+++..+.. +-+...+..+..++...|++++|...|+.+.+....+ +...+..+...+...|+.++|...|+
T Consensus 90 ~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 122444455544432 1234444555555555555555555555555543211 23345555555555555555555555
Q ss_pred HH
Q 044084 260 KM 261 (343)
Q Consensus 260 ~m 261 (343)
+.
T Consensus 169 ~a 170 (176)
T 2r5s_A 169 RQ 170 (176)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.08 E-value=1.8e-08 Score=82.05 Aligned_cols=200 Identities=8% Similarity=-0.033 Sum_probs=141.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHH
Q 044084 34 KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKV 113 (343)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (343)
..|++++|.+++++..+.... . .+...++++.|...|.+. ...|...|++++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~------------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S------------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQ 54 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C------------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c------------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHH
Confidence 356788888888887654321 0 011146777777777654 345667888999
Q ss_pred HHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC---CC--chhhHHHHHHHHhcCCcHHH
Q 044084 114 AEELFKEAEEKGMLR-----DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL---NI--SDCISCVIVNGFSKRRAYWA 183 (343)
Q Consensus 114 a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~ 183 (343)
|...+.+..+..... -..+|+.+...|...|++++|+..|++..+... .+ ...++..+...|.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 988888776532111 145788888999999999999999988654311 11 13467778888888 99999
Q ss_pred HHHHHHHHHHcCC---CC--CHhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCcC-hhhHHHHHHHHHccCChHH
Q 044084 184 AVKVYEQLISQGC---IP--GQVTYASIINAYCRIGLYSKAEKVFIEMQQK----GFDKC-VVAYSSMVAMYGKTGRIRD 253 (343)
Q Consensus 184 a~~~~~~~~~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~ 253 (343)
|+..|++...... .+ ...++..+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998775410 11 1356778888999999999999999988764 11111 2356677778888899999
Q ss_pred HHHHHHHHh
Q 044084 254 AMRLVAKMK 262 (343)
Q Consensus 254 a~~~~~~m~ 262 (343)
|...|++..
T Consensus 214 A~~~~~~al 222 (307)
T 2ifu_A 214 AQKCVRESY 222 (307)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999988
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=2e-08 Score=81.73 Aligned_cols=190 Identities=12% Similarity=0.011 Sum_probs=89.0
Q ss_pred chhhHHHHHHHHHhCCC------CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHH
Q 044084 2 NSQSKLHYYEKMKSAGI------VLD----SGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLT--PSSTHMYKILCDS 69 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~------~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~li~~ 69 (343)
++++|.+++++..+... .++ ...|......|...|++++|...|.+..+...... .....+|+.+...
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 85 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMM 85 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788888887765311 122 11344555555556666666666555433211100 1112355555555
Q ss_pred hhccCcHHHHHHHHHHHHhcC---CCCC--hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHH
Q 044084 70 LGKSGRAFEILKFFRDMKEKG---ILED--PSVYASLICSFASIAEVKVAEELFKEAEEKGMLR-----DLEVFLKLVLM 139 (343)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~ 139 (343)
|...|++++|+..|++..+.. -.+. ..++..+...|.. |++++|...+++..+..... ...++..+...
T Consensus 86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 164 (307)
T 2ifu_A 86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL 164 (307)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 666666666666655544320 0111 2334444455555 55555555555544321110 12345555555
Q ss_pred HHhcCcHhHHHHHHHHHHhcCC----CCc-hhhHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044084 140 YIEEGMVEKTLEVVESMKNAEL----NIS-DCISCVIVNGFSKRRAYWAAVKVYEQLI 192 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (343)
|.+.|++++|+..|++...... .+. ...+..+..++...|++++|...|++..
T Consensus 165 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 165 LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555555555555443211 000 1133334444444555555555555554
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=1.9e-06 Score=74.64 Aligned_cols=299 Identities=11% Similarity=0.018 Sum_probs=175.8
Q ss_pred chhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CCCCCCchHHHHHHHHHHhhc----cCc
Q 044084 2 NSQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGD-SEKVAALFLECESR-KLDLTPSSTHMYKILCDSLGK----SGR 75 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~----~~~ 75 (343)
+.+.+..+|++.... .|+...|...+....+.++ .+....+|+..... |. ++.+...|...+..+.. .++
T Consensus 29 ~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~--d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 29 DYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN--YWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp CHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT--CTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--CcccHHHHHHHHHHHHhchhhhHH
Confidence 578889999998884 4799999999988888774 45677788776653 32 23335789888887653 467
Q ss_pred HHHHHHHHHHHHhcCCCCChHhHHHHHH--------------------------------------------HHhc--cc
Q 044084 76 AFEILKFFRDMKEKGILEDPSVYASLIC--------------------------------------------SFAS--IA 109 (343)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------------~~~~--~~ 109 (343)
.+.+.++|++.+......-...|..... .|+. .+
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 8889999999887321100111111110 0000 01
Q ss_pred C---------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc
Q 044084 110 E---------VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 110 ~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (343)
+ .+.+..+|+++....+ .+...|...+..+.+.|+.+.|..+|++.... +.+...|...... ...++
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~ 260 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEA 260 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhH
Confidence 0 2234456666665433 35667777777777778888888888877766 2333222221111 11111
Q ss_pred HHHHHHHHHHHHHcC---------CCC---CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHcc
Q 044084 181 YWAAVKVYEQLISQG---------CIP---GQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~---------~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (343)
+++.+.+.- ..+ ....|...+....+.++.+.|..+|+.. +.. +.+...|...+..-...
T Consensus 261 ------~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 261 ------VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp ------HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH
Confidence 122222110 001 1234555556555677899999999988 321 22334444333222223
Q ss_pred C-ChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHh-----------HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 249 G-RIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEK-----------YTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 249 ~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-----------~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
+ +.+.|..+|+...+.- .-++..+...++...+.|+.+.|.. |...+.--...|+.+.+.++++++.
T Consensus 333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3 6899999999988752 2134455666777777888887764 6666666667799999988888875
Q ss_pred h
Q 044084 317 M 317 (343)
Q Consensus 317 ~ 317 (343)
+
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 3
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.01 E-value=1.9e-08 Score=70.02 Aligned_cols=103 Identities=10% Similarity=0.087 Sum_probs=67.6
Q ss_pred CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044084 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKL 136 (343)
Q Consensus 57 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (343)
|.....+......+.+.|++++|++.|++..+... .+...|..+..++.+.|++++|...+++.++..+. +...|..+
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l 87 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHH
Confidence 44455666666777777777777777777666532 24556666666777777777777777776665533 56667777
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhcCC
Q 044084 137 VLMYIEEGMVEKTLEVVESMKNAEL 161 (343)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (343)
..+|...|++++|++.|++..+..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 7777777777777777777666543
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.99 E-value=8.6e-08 Score=73.28 Aligned_cols=127 Identities=9% Similarity=0.039 Sum_probs=75.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044084 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142 (343)
Q Consensus 63 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (343)
+..+...+...|++++|++.|++.. .|+...+..+...+...|++++|...+++..+... .+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 3444555566666666666665542 34555666666666666666666666666666543 255666666666666
Q ss_pred cCcHhHHHHHHHHHHhcCCCC---------------chhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 143 EGMVEKTLEVVESMKNAELNI---------------SDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
.|++++|++.|++..+..... ....+..+..++...|++++|...|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666665543211 1134555666666666666666666666654
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.98 E-value=2.2e-07 Score=75.02 Aligned_cols=91 Identities=15% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHHhhccCcHHHHHHHHHHHHhcCC-CCChH----hHHHHHHHHhcccCHHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 044084 67 CDSLGKSGRAFEILKFFRDMKEKGI-LEDPS----VYASLICSFASIAEVKVAEELFKEAEEKGML-RD----LEVFLKL 136 (343)
Q Consensus 67 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 136 (343)
+..+...|++++|.+.+++...... .|+.. .+..+...+...+++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445555555555555555544211 11110 1122333344444555555555555542111 11 2234555
Q ss_pred HHHHHhcCcHhHHHHHHHHHH
Q 044084 137 VLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~ 157 (343)
...|...|++++|+..|+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555543
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.98 E-value=9.1e-08 Score=77.23 Aligned_cols=165 Identities=9% Similarity=-0.029 Sum_probs=120.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCC-CC----hHhHH
Q 044084 28 IMEAFYKIGDSEKVAALFLECESRKLDLTPSS---THMYKILCDSLGKSGRAFEILKFFRDMKEKGIL-ED----PSVYA 99 (343)
Q Consensus 28 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 99 (343)
.+..+...|++++|..++++..+..... +.. ...+..+...+...+++++|+..|++....... ++ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYH-PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCC-hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4677889999999999999987743221 111 123445777888889999999999999884322 22 23688
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc----CCCC-chhhH
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEK-----GMLR-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNA----ELNI-SDCIS 168 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 168 (343)
.+...|...|+++.|...++++.+. +..+ ...++..+...|.+.|++++|+..+++..+. +..+ -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999998841 1111 2447888899999999999999999887542 2111 14567
Q ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHH
Q 044084 169 CVIVNGFSKRR-AYWAAVKVYEQLIS 193 (343)
Q Consensus 169 ~~l~~~~~~~~-~~~~a~~~~~~~~~ 193 (343)
..+..++...| ++++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77888888888 46888888877654
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.98 E-value=7.6e-07 Score=72.51 Aligned_cols=226 Identities=11% Similarity=0.029 Sum_probs=164.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccC-cHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc-
Q 044084 31 AFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSG-RAFEILKFFRDMKEKGILEDPSVYASLICSFASI- 108 (343)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 108 (343)
...+.+..++|+++++.+...+ |.+..+|+.--..+...+ .+++++++++.+.....+ +..+|+.-...+.+.
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n----P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN----PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC----chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhc
Confidence 3444556678999999998876 334578888777777777 599999999999987544 667777766666665
Q ss_pred c-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHh--------HHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC
Q 044084 109 A-EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVE--------KTLEVVESMKNAELNISDCISCVIVNGFSKRR 179 (343)
Q Consensus 109 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (343)
+ ++++++.+++.+.+...+ +..+|+.-...+.+.|.++ ++++.++++.+.++ -|...|+.....+.+.+
T Consensus 138 ~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTST
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcc
Confidence 6 788999999999887654 8888888777777777776 89999999998877 57778888777777776
Q ss_pred c-------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCh--------------------hHHHHHHHHHHHcC--
Q 044084 180 A-------YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLY--------------------SKAEKVFIEMQQKG-- 230 (343)
Q Consensus 180 ~-------~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~-- 230 (343)
. ++++++.+++..... +-|...|+-+-..+.+.|+. .........+...+
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 5 688888888888764 44666777666666655543 12222222222211
Q ss_pred ---CCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 231 ---FDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 231 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
-.+.......+++.|...|+.++|.++++.+.+.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1356778888999999999999999999998754
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=1e-07 Score=72.87 Aligned_cols=126 Identities=13% Similarity=-0.001 Sum_probs=78.0
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (343)
+..+...+...|++++|...+++.. .|+..++..+...|...|++++|+..|++...... .+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 3445556666677777777766552 45666777777777777777777777777666543 345566666667777
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCH----------------hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 178 RRAYWAAVKVYEQLISQGCIPGQ----------------VTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
.|++++|...|++..+... .+. ..+..+..+|...|++++|...|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777666421 111 34455555566666666666666665554
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.95 E-value=2.7e-08 Score=71.42 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=67.4
Q ss_pred CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044084 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKL 136 (343)
Q Consensus 57 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (343)
|.+...+..+...+.+.|++++|+..|++...... .+...|..+..++...|++++|...|++..+..+. ++..|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHH
Confidence 44456666666777777777777777777766532 24556666666777777777777777777665543 56666667
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 137 VLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
..+|...|++++|+..|++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777777766554
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.91 E-value=2.4e-08 Score=80.08 Aligned_cols=195 Identities=7% Similarity=-0.052 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
...+..+...+...|++++|+..|++...... .+...|..+..++.+.|++++|...+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45666667777777777777777777766532 25566667777777777777777777777765432 56777777777
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHH
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKA 219 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 219 (343)
|...|++++|...|++..+.++. +...+...+....+ ..... -+........+.+..... .+..+. .|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~-~l~~l~-~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHS-YLTRLI-AAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHH-HHHHHH-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHH-HHHHHH-HHHHHHH
Confidence 88888888888877776554321 11111111111111 11111 112222222233333322 233222 5777777
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHcc-CChHHHHHHHHHHhhC
Q 044084 220 EKVFIEMQQKGFDKCVVAYSSMVAMYGKT-GRIRDAMRLVAKMKPK 264 (343)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~ 264 (343)
.+.++...+.. +.+......+...+.+. +.+++|.++|.++.+.
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 77777666543 22333333444444444 5577788888777653
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=1.3e-07 Score=69.05 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=61.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYI 141 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (343)
.|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+... .+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34445555555555555555555555432 11344455555555555555555555555555432 24455555555555
Q ss_pred hcCcHhHHHHHHHHHHhcCCCCchhhHH--HHHHHHhcCCcHHHHHHHHHHH
Q 044084 142 EEGMVEKTLEVVESMKNAELNISDCISC--VIVNGFSKRRAYWAAVKVYEQL 191 (343)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 191 (343)
..|++++|...|++.....+ .+...+. .....+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555555554432 1222221 1222244445555555555443
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=1.1e-07 Score=69.48 Aligned_cols=126 Identities=9% Similarity=-0.054 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 212 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 212 (343)
+..+...+...|++++|...|++..+... .+..++..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 34444444445555555555554444332 233344444444455555555555555544432 2233444444455555
Q ss_pred cCChhHHHHHHHHHHHcCCCcChhhHH--HHHHHHHccCChHHHHHHHHHH
Q 044084 213 IGLYSKAEKVFIEMQQKGFDKCVVAYS--SMVAMYGKTGRIRDAMRLVAKM 261 (343)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m 261 (343)
.|++++|...++...+.. +.+...+. ..+..+...|++++|...+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 555555555555554432 12222222 2222244445555555554443
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.89 E-value=9.2e-07 Score=72.01 Aligned_cols=219 Identities=9% Similarity=-0.007 Sum_probs=162.2
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhcc-C-cHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIG-DSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKS-G-RAFEI 79 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~a 79 (343)
.++|+++++.++..++ -+..+|+.--.++...| .+++++++++.+...+. .+..+|+.-...+... + +++++
T Consensus 70 se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP----Kny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 70 SERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL----KSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHhcCCChHHH
Confidence 3679999999998654 35556888888888888 59999999999988763 3468888877777666 6 88999
Q ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHhcccCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc------
Q 044084 80 LKFFRDMKEKGILEDPSVYASLICSFASIAEVK--------VAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM------ 145 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 145 (343)
+++++++.+...+ |..+|+.-.-.+.+.+.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 9999999987543 6777776665665555555 889999999998765 89999998888888776
Q ss_pred -HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcH--------------------HHHHHHHHHHHHcC-----CCCC
Q 044084 146 -VEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAY--------------------WAAVKVYEQLISQG-----CIPG 199 (343)
Q Consensus 146 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~p~ 199 (343)
++++++.+++.....+ -|...|+-+-..+.+.|.. ........++...+ -.++
T Consensus 223 ~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 6889999999888776 5777787665555554443 22333333332221 1356
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 200 QVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 200 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
...+..++..|...|+.++|.++++.+.+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 777888999999999999999999998754
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.88 E-value=1.4e-07 Score=65.99 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044084 59 STHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVL 138 (343)
Q Consensus 59 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (343)
+...|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 34555555556666666666666666555442 113445555555555666666666666655554322 4555555666
Q ss_pred HHHhcCcHhHHHHHHHHHHhcC
Q 044084 139 MYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
.+...|++++|.+.|++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 6666666666666666555443
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=1.2e-07 Score=65.83 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 212 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 212 (343)
+......|.+.|++++|++.|++..+.++ .+...|..+..++...|++++|+..+++..+.. +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 33334444444444444444444443332 233334444444444444444444444444332 1223334444444444
Q ss_pred cCChhHHHHHHHHHHH
Q 044084 213 IGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 213 ~~~~~~a~~~~~~~~~ 228 (343)
.|++++|...|+...+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=2.3e-06 Score=68.92 Aligned_cols=159 Identities=13% Similarity=0.019 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCch-----hhHHHHHHHHhcCCcHHHHHHHHHHHHHcCC---CCC--H
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISD-----CISCVIVNGFSKRRAYWAAVKVYEQLISQGC---IPG--Q 200 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~ 200 (343)
..+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555667777888888888888776654332111 1233455566777888888888888765321 111 3
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHH---cC-CCc--ChhhHHHHHHHHHccCChHHHHHHHHHHhhCC----CC-ch
Q 044084 201 VTYASIINAYCRIGLYSKAEKVFIEMQQ---KG-FDK--CVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG----CE-PN 269 (343)
Q Consensus 201 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~-p~ 269 (343)
.+++.+...|...|++++|...+++..+ .. -.+ ...++..+...|...|++++|...+++..+.. .. .-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677778888888888888888888763 21 111 12577788888888888888888888876431 00 01
Q ss_pred HHHHHHHHHHHhcccChhHH
Q 044084 270 VWIYNSLMDMHGRAKNLRQL 289 (343)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a 289 (343)
..+|..+..+|.+.|+.++|
T Consensus 236 ~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHH
Confidence 45556666666666666665
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.88 E-value=1.6e-07 Score=64.63 Aligned_cols=95 Identities=16% Similarity=0.234 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYC 211 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 211 (343)
.+..+...+...|++++|.+.++++..... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 333444444444444444444444433322 222333344444444444444444444443331 122333334444444
Q ss_pred ccCChhHHHHHHHHHHH
Q 044084 212 RIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 212 ~~~~~~~a~~~~~~~~~ 228 (343)
..|++++|...++.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=2.2e-07 Score=75.02 Aligned_cols=166 Identities=10% Similarity=-0.029 Sum_probs=94.9
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC---Cc--hh
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKGMLRD-----LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN---IS--DC 166 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 166 (343)
.+...+..+...|++++|...+.+..+...... ...+..+...+...|++++|+..+++....... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455556666667777666666655432211 122334555566666777777777766542211 11 23
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHH---cC-CCC--CHhhHHHHHHHHHccCChhHHHHHHHHHHHcC----CCc-Ch
Q 044084 167 ISCVIVNGFSKRRAYWAAVKVYEQLIS---QG-CIP--GQVTYASIINAYCRIGLYSKAEKVFIEMQQKG----FDK-CV 235 (343)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 235 (343)
+++.+...|...|++++|...+++..+ .. ..+ ...++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 566667777777777777777776652 11 111 11466666777777777777777777665431 001 14
Q ss_pred hhHHHHHHHHHccCChHHH-HHHHHHHh
Q 044084 236 VAYSSMVAMYGKTGRIRDA-MRLVAKMK 262 (343)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a-~~~~~~m~ 262 (343)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5666777777777777777 55565544
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.86 E-value=1.6e-07 Score=65.60 Aligned_cols=116 Identities=12% Similarity=0.006 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 044084 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIIN 208 (343)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 208 (343)
+...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 345555566666666666666666666555433 234455555566666666666666666655542 223445555555
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHc
Q 044084 209 AYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 247 (343)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (343)
++...|++++|...|+...+.. +.+...+..+..++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 5666666666666666655543 2233444444444443
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.84 E-value=6.2e-08 Score=73.41 Aligned_cols=133 Identities=7% Similarity=-0.027 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhc----CC-CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc----CCCC--
Q 044084 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNA----EL-NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ----GCIP-- 198 (343)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-- 198 (343)
..++..+...+...|++++|...+++.... +. +....++..+...+...|++++|...+++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444444444555555555544443321 00 011223444444444555555555554443332 1011
Q ss_pred CHhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCC-cChhhHHHHHHHHHccCChHHHHHHHHHHh
Q 044084 199 GQVTYASIINAYCRIGLYSKAEKVFIEMQQK----GFD-KCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 199 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
....+..+...+...|++++|...+++..+. +.+ .-..++..+...+...|++++|.+.+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1123344444455555555555555544321 100 001223445555555555555555555444
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.84 E-value=5.8e-08 Score=71.95 Aligned_cols=120 Identities=9% Similarity=0.096 Sum_probs=60.6
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCcH--hH
Q 044084 72 KSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM-YIEEGMV--EK 148 (343)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 148 (343)
..|++++|+..+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555554432 123445555555555555555555555555554322 44555555555 4555555 55
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 149 TLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
|...|++.....+ .+...+..+...+...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666555555443 23344555555555556666666665555554
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.84 E-value=1.7e-07 Score=65.19 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYC 211 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 211 (343)
.+..+...+...|++++|...|++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 334444444444444444444444443322 223334444444444444444444444444331 122333444444444
Q ss_pred ccCChhHHHHHHHHHHHc
Q 044084 212 RIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~ 229 (343)
..|++++|...++...+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 444444444444444443
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.84 E-value=2.3e-07 Score=70.19 Aligned_cols=164 Identities=11% Similarity=0.064 Sum_probs=106.6
Q ss_pred HhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHccCC
Q 044084 141 IEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ----GCIP-GQVTYASIINAYCRIGL 215 (343)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~ 215 (343)
...|++++|.++++.+.. .......++..+...+...|++++|...+++.... +..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467889999996655543 22245667888999999999999999999998762 2222 34567778888999999
Q ss_pred hhHHHHHHHHHHHc----CCC--cChhhHHHHHHHHHccCChHHHHHHHHHHhhCC---CCch--HHHHHHHHHHHhccc
Q 044084 216 YSKAEKVFIEMQQK----GFD--KCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG---CEPN--VWIYNSLMDMHGRAK 284 (343)
Q Consensus 216 ~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~ 284 (343)
+++|...+++..+. +-. .....+..+...+...|++++|...+++..+.. -.+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987764 211 124567888899999999999999998876421 0111 122344444455555
Q ss_pred ChhHHHh-HHHHHHHHHhcCCH
Q 044084 285 NLRQLEK-YTTVISAYNMAREF 305 (343)
Q Consensus 285 ~~~~a~~-~~~l~~~~~~~g~~ 305 (343)
++++|.. +...+..+.+.|+.
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~ 183 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFAELEDS 183 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHHHHcCCH
Confidence 5554444 33333333333333
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=2.6e-07 Score=63.58 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (343)
..|..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+... .+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 455555555566666666666666555442 12344455555555555555555555555555432 2445555555555
Q ss_pred HhcCcHhHHHHHHHHHHhcC
Q 044084 141 IEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~ 160 (343)
...|++++|...|+++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 55555555555555554443
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.83 E-value=5.2e-08 Score=72.20 Aligned_cols=121 Identities=7% Similarity=0.004 Sum_probs=61.6
Q ss_pred hcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHH-HhcCCcH--H
Q 044084 106 ASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG-FSKRRAY--W 182 (343)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 182 (343)
...|++++|...++...+..+. +...+..+...|...|++++|...|++..+..+ .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 3445566666666665554432 455666666666666666666666666555443 233344444444 4455555 5
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 183 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
+|...+++..+.. +.+...+..+...|...|++++|...|+...+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 5555555555442 223344444555555555555555555555554
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.82 E-value=2.7e-07 Score=66.21 Aligned_cols=97 Identities=11% Similarity=0.058 Sum_probs=69.8
Q ss_pred HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 044084 96 SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGF 175 (343)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (343)
..+..+...+.+.|++++|...|+++.+..+. +...|..+..+|...|++++|+..|++.....+ .+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHH
Confidence 35556666777777777777777777776543 677777777777777777777777777776665 3455677777777
Q ss_pred hcCCcHHHHHHHHHHHHHc
Q 044084 176 SKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~ 194 (343)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777765
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.82 E-value=1.6e-07 Score=77.41 Aligned_cols=123 Identities=11% Similarity=-0.057 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC--------------hHhHHHHHHHHhcccCHHHHHHHHHHHHHcC
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILED--------------PSVYASLICSFASIAEVKVAEELFKEAEEKG 125 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (343)
...|..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666667777777777777777777666532211 2445555555555555555555555555544
Q ss_pred CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHH
Q 044084 126 MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (343)
+. +...+..+..+|...|++++|+..|++..+..+ .+...+..+..++...|+.+++
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 32 455555555555555555555555555554443 2334444555555555555544
No 141
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.81 E-value=1.4e-05 Score=64.73 Aligned_cols=132 Identities=10% Similarity=0.001 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhcc
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGD----------SEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKS 73 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 73 (343)
++|+.+++.++..++ -+..+|+.--..+...+. +++++.+++.+...+ |.+..+|+.-...+...
T Consensus 47 ~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~----PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 47 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN----PKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHhcc
Confidence 355666666665432 122334443333333222 455555555555443 22235555544444444
Q ss_pred C--cHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044084 74 G--RAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE-VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142 (343)
Q Consensus 74 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (343)
+ .+++++++++++.+.... |...|+.-.-.+...|. ++++++.++.+.+..+. |...|+.....+..
T Consensus 122 ~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 122 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 4 255666666666555322 44555544444444454 45555666655555443 55555555444443
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.81 E-value=3.1e-07 Score=63.84 Aligned_cols=99 Identities=7% Similarity=-0.008 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 3445555555555555555555555555432 123444445555555555555555555555544321 34455555555
Q ss_pred HHhcCcHhHHHHHHHHHHhcC
Q 044084 140 YIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~ 160 (343)
+...|++++|...|++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 555555555555555554443
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=3.3e-08 Score=79.28 Aligned_cols=195 Identities=9% Similarity=-0.033 Sum_probs=130.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
+...+..+...+.+.|++++|...|++..... |.+...|..+..++...|++++|+..+++..+... .+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 55678888999999999999999999998765 33368899999999999999999999999988642 35678888
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCc
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (343)
+..++...|++++|...|++..+..+. +...+...+....+ ..++.. +........+.+......+ ..+. .|+
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l~-~~~ 150 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYL-TRLI-AAE 150 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHH-HHHH-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHH-HHHH-HHH
Confidence 999999999999999999998875421 11111111111111 111112 1222223333333333333 3332 688
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHcc-CChhHHHHHHHHHHHc
Q 044084 181 YWAAVKVYEQLISQGCIPGQVTYA-SIINAYCRI-GLYSKAEKVFIEMQQK 229 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~-~~~~~a~~~~~~~~~~ 229 (343)
+++|.+.++...+. .|+..... .+...+.+. +.++++.++|....+.
T Consensus 151 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 151 RERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999988887765 45544333 333333443 6688899999877653
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.76 E-value=1.7e-07 Score=67.18 Aligned_cols=101 Identities=8% Similarity=0.022 Sum_probs=59.7
Q ss_pred CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044084 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKL 136 (343)
Q Consensus 57 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (343)
|.+...+..+...+...|++++|+..|++...... .+...|..+..++...|++++|...|++..+..+. +...+..+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l 95 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHH
Confidence 33345555566666666666666666666655432 24555555666666666666666666666655432 45556666
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhc
Q 044084 137 VLMYIEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~ 159 (343)
..+|...|++++|...|++..+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666665543
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.76 E-value=2.8e-07 Score=65.52 Aligned_cols=103 Identities=10% Similarity=-0.003 Sum_probs=64.1
Q ss_pred CCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044084 56 TPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLK 135 (343)
Q Consensus 56 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (343)
+|.+...+..+...+.+.|++++|+..|++....+. .+...|..+..++...|++++|...|++..+..+. ++..+..
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 91 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFH 91 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHH
Confidence 344445555666666666777777777766665532 24555666666666667777777777666665533 5556666
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 136 LVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
+..+|...|++++|...|+......
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666777777777777776665443
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.76 E-value=3.6e-07 Score=75.26 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc--------------hhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS--------------DCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
+...+..+...|.+.|++++|+..|++......... ...|..+..++.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677777777788888888888887776554221 355666666777777777777777776665
Q ss_pred CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHH-HHHHHHHh
Q 044084 195 GCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDA-MRLVAKMK 262 (343)
Q Consensus 195 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~m~ 262 (343)
. +.+...+..+..+|...|++++|...|+...+.. +.+...+..+..++...|+.+++ ...++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3345566666666777777777777777766654 33455666666666666666666 33444443
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=5.4e-07 Score=62.45 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (343)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+..+. +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 445555566666666666666666665543 124455555666666666666666666666655432 455666666666
Q ss_pred HhcCcHhHHHHHHHHHHhc
Q 044084 141 IEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~ 159 (343)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666665543
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.73 E-value=1.2e-07 Score=67.92 Aligned_cols=98 Identities=10% Similarity=-0.058 Sum_probs=67.9
Q ss_pred hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 044084 95 PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG 174 (343)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (343)
...+..+...+...|++++|...|++.....+. +...|..+..+|...|++++|+..|++....++ .+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 344555666677777777777777777766543 677777777777777777777777777766654 344566667777
Q ss_pred HhcCCcHHHHHHHHHHHHHc
Q 044084 175 FSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~ 194 (343)
+...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
No 149
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.72 E-value=3.1e-05 Score=67.09 Aligned_cols=101 Identities=11% Similarity=0.169 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCc-HHHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGR-AFEILK 81 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~ 81 (343)
.+.|..+|+.+... -|. |+++.+..+|++....- |+ ...|...+....+.+. .+....
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~--ps---~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKS--YN---LDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTC--CC---HHHHHHHHHHHHHHC----CTHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccC--CC---HHHHHHHHHHHHHhCchHHHHHH
Confidence 45566666666553 122 88999999999987743 33 6789988888777663 456777
Q ss_pred HHHHHHhc-CCCC-ChHhHHHHHHHHh----cccCHHHHHHHHHHHHHc
Q 044084 82 FFRDMKEK-GILE-DPSVYASLICSFA----SIAEVKVAEELFKEAEEK 124 (343)
Q Consensus 82 ~~~~~~~~-~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~ 124 (343)
+|+..... |..| +...|...+..+. ..++.+.+..+|++.+..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 88877664 4333 5677877776654 346788899999998873
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2.3e-07 Score=73.04 Aligned_cols=127 Identities=9% Similarity=-0.016 Sum_probs=53.6
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh
Q 044084 65 ILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLR--DLEVFLKLVLMYIE 142 (343)
Q Consensus 65 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 142 (343)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| ....+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34444455555555555555444322 222122233334445555555555554322211 00 01234444455555
Q ss_pred cCcHhHHHHHHHHHHhcCCCCc--hhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 143 EGMVEKTLEVVESMKNAELNIS--DCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
.|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555555555442221021 122333344444455555555555555444
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.71 E-value=5e-08 Score=73.80 Aligned_cols=148 Identities=11% Similarity=-0.004 Sum_probs=72.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCC-CC--------------h
Q 044084 31 AFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGIL-ED--------------P 95 (343)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~--------------~ 95 (343)
.....|+++++.+.|+...... +.....+..+...+...|++++|+..|++....... |+ .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK----VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ---------CCCSGGGCCHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3444455555555543221111 111345666677777777888888887777664211 10 1
Q ss_pred HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 044084 96 SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGF 175 (343)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (343)
..+..+..++...|++++|...+++..+... .+...+..+..+|...|++++|+..|++..+..+ .+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 3445555555555666666666665555432 2455555555556666666666666655554433 2333444444444
Q ss_pred hcCCcHHHH
Q 044084 176 SKRRAYWAA 184 (343)
Q Consensus 176 ~~~~~~~~a 184 (343)
...++..++
T Consensus 167 ~~~~~~~~~ 175 (198)
T 2fbn_A 167 NKLKEARKK 175 (198)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 444444333
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.70 E-value=2.9e-07 Score=72.50 Aligned_cols=188 Identities=11% Similarity=-0.037 Sum_probs=126.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHH-------HHHhhccCcHHHHHHHHHHHHhcCCCCCh-----------
Q 044084 34 KIGDSEKVAALFLECESRKLDLTPSSTHMYKIL-------CDSLGKSGRAFEILKFFRDMKEKGILEDP----------- 95 (343)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------- 95 (343)
..++...|.+.|.++.... |.....|..+ ...+...++..+++..++.-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d----P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD----ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTT
T ss_pred cCCCHHHHHHHHHHHHHhC----hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcc
Confidence 5799999999999998876 3336889888 4555555555566555554433 22221
Q ss_pred -----------HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc
Q 044084 96 -----------SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS 164 (343)
Q Consensus 96 -----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (343)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 122335566778888888888888777654 333366666677888888888888887554322 111
Q ss_pred --hhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 044084 165 --DCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPG--QVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230 (343)
Q Consensus 165 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (343)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23566677788888888888888888774432143 2344555666777888888888888888764
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.68 E-value=5.8e-07 Score=63.24 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
...|..+...+...|++++|+..|++...... .+...+..+..++...|+++.|...+++..+..+. +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 45556666666666666666666666655432 23455555666666666666666666666655432 45566666666
Q ss_pred HHhcCcHhHHHHHHHHHHh
Q 044084 140 YIEEGMVEKTLEVVESMKN 158 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~ 158 (343)
+...|++++|+..|++...
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666544
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.67 E-value=5.3e-08 Score=73.69 Aligned_cols=124 Identities=7% Similarity=0.003 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc---------------hhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS---------------DCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
...+..+...+...|++++|+..|++......... ...+..+..++...|++++|...+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33455555566666666666666666554322111 134555566666666666666666666655
Q ss_pred CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHH
Q 044084 195 GCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAM 255 (343)
Q Consensus 195 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (343)
. +.+...+..+..+|...|++++|...|+...+.. +.+...+..+..++...++..++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2344555566666666666666666666666553 234445555555555555444443
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=2.5e-06 Score=57.82 Aligned_cols=98 Identities=10% Similarity=-0.043 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (343)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344555555555555555555555555442 123444555555555555555555555555554322 455555555555
Q ss_pred HhcCcHhHHHHHHHHHHhcC
Q 044084 141 IEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~ 160 (343)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 55666666666555555443
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.65 E-value=8.4e-05 Score=60.25 Aligned_cols=231 Identities=8% Similarity=0.005 Sum_probs=153.3
Q ss_pred hhHHHHHHH---HHhcCCH-HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCc----------HHHHHHHHHHHHh
Q 044084 23 GCYCQIMEA---FYKIGDS-EKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGR----------AFEILKFFRDMKE 88 (343)
Q Consensus 23 ~~~~~l~~~---~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~ 88 (343)
..|..+... ..+.|.+ ++|+++++.+...+ |.+..+|+.--..+...+. +++++.+++.+..
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n----P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 102 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 345444443 2345555 48899999997766 3345677765444443333 6788889988888
Q ss_pred cCCCCChHhHHHHHHHHhccc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHhcCCCCch
Q 044084 89 KGILEDPSVYASLICSFASIA--EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM-VEKTLEVVESMKNAELNISD 165 (343)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~ 165 (343)
...+ +..+|+.-...+.+.+ ++++++.+++.+.+..+. |..+|+.-.......|. ++++++.++++.+.++ -|.
T Consensus 103 ~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~ 179 (331)
T 3dss_A 103 VNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNY 179 (331)
T ss_dssp HCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCH
T ss_pred hCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCH
Confidence 6543 6777777666666666 488999999999988764 88888888888888888 5899999999988876 566
Q ss_pred hhHHHHHHHHhcC--------------CcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-----------CChhHHH
Q 044084 166 CISCVIVNGFSKR--------------RAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI-----------GLYSKAE 220 (343)
Q Consensus 166 ~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-----------~~~~~a~ 220 (343)
..|+.....+... +.++++++.+.+..... +-|...|+-+-..+.+. +.++++.
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 6777655444433 45778888888887763 34556665444444443 3467778
Q ss_pred HHHHHHHHcCCCcChhhHHHHH-----HHHHccCChHHHHHHHHHHhhC
Q 044084 221 KVFIEMQQKGFDKCVVAYSSMV-----AMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
+.++++.+.. ||. .|..+. ...-..|..+++...+.++++.
T Consensus 259 ~~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 259 ESCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 8888888764 443 233211 1222345666777777777754
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.65 E-value=6.9e-06 Score=70.03 Aligned_cols=200 Identities=9% Similarity=-0.016 Sum_probs=111.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCc-------------hHHHHHHHHHHhhccCcHHHHHHHHHHHHhcC-CCCC
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPS-------------STHMYKILCDSLGKSGRAFEILKFFRDMKEKG-ILED 94 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 94 (343)
...+.+.|++++|.+.|..+.+........ ...++..+...|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 344566677777777777776654332210 01345667777777777777777777665421 1111
Q ss_pred h----HhHHHHHHHHhcccCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC----
Q 044084 95 P----SVYASLICSFASIAEVKVAEELFKEAEE----KGMLR-DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL---- 161 (343)
Q Consensus 95 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 161 (343)
. .+.+.+-..+...|+.+.+..++..... .+..+ -..++..+...|...|++++|..++++....-.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1122223333455667777777666543 22222 245666677777777777777777776543211
Q ss_pred -CCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc----CCCCC--HhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 162 -NISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ----GCIPG--QVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 162 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
+....++..++..|...|++++|..++++.... +.+|. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111235666677777777777777777765542 11111 13344455556666777777766655543
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.4e-06 Score=60.40 Aligned_cols=96 Identities=5% Similarity=-0.089 Sum_probs=58.9
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHh
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFS 176 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (343)
.+..+...+.+.|++++|...|++..+..+. +...|..+..+|.+.|++++|+..+++..+.++ .+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 4455555666666666666666666665432 566666666666666666666666666665543 34445556666666
Q ss_pred cCCcHHHHHHHHHHHHHc
Q 044084 177 KRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~ 194 (343)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666665544
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=3.8e-06 Score=59.70 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC----hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044084 59 STHMYKILCDSLGKSGRAFEILKFFRDMKEKGILED----PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFL 134 (343)
Q Consensus 59 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (343)
....+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|...+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 3566667777777777777777777777664 333 455666666677777777777777776665432 566666
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 135 KLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
.+..++...|++++|...|++.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77777777777777777777766554
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=2.5e-06 Score=57.83 Aligned_cols=97 Identities=11% Similarity=0.001 Sum_probs=57.2
Q ss_pred HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 044084 96 SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGF 175 (343)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (343)
..+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+..+ .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 34555555666666666666666666655432 555666666666666666666666666655443 2344555555666
Q ss_pred hcCCcHHHHHHHHHHHHHc
Q 044084 176 SKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~ 194 (343)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666665544
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.64 E-value=4.9e-06 Score=70.92 Aligned_cols=198 Identities=8% Similarity=0.004 Sum_probs=142.2
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhcCCCCCh----------------HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC-C
Q 044084 66 LCDSLGKSGRAFEILKFFRDMKEKGILEDP----------------SVYASLICSFASIAEVKVAEELFKEAEEKGML-R 128 (343)
Q Consensus 66 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 128 (343)
-.+.+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+.+.-.. +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 356778899999999999999886432211 23677889999999999999999887763211 1
Q ss_pred CH----HHHHHHHHHHHhcCcHhHHHHHHHHHHhc----CCC-CchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc--CC-
Q 044084 129 DL----EVFLKLVLMYIEEGMVEKTLEVVESMKNA----ELN-ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ--GC- 196 (343)
Q Consensus 129 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 196 (343)
+. .+.+.+...+...|++++|..+++..... +.. ....++..+...+...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 23344444555678899999999887542 221 22446778899999999999999999988654 11
Q ss_pred -CC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCcC--hhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 197 -IP-GQVTYASIINAYCRIGLYSKAEKVFIEMQQK----GFDKC--VVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 197 -~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
.+ ...++..++..|...|++++|..+++..... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2356788889999999999999999887653 21111 24566777788889999999888877653
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=1.3e-06 Score=60.73 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=22.4
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHH
Q 044084 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEA 121 (343)
Q Consensus 63 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 121 (343)
+..+...+.+.|++++|++.|++..+... -+...|..+..++...|++++|+..+++.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 33344444444444444444444433321 12333333333344444444444444333
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.61 E-value=9.7e-07 Score=62.68 Aligned_cols=96 Identities=11% Similarity=-0.024 Sum_probs=65.6
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHh
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFS 176 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (343)
.+..+...+.+.|++++|...|++.....+. +...|..+..+|...|++++|+..|++....++ .+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 3444556666777777777777777766543 666777777777777777777777777766654 34455666677777
Q ss_pred cCCcHHHHHHHHHHHHHc
Q 044084 177 KRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~ 194 (343)
..|++++|...|++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776654
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.61 E-value=1.2e-06 Score=58.85 Aligned_cols=95 Identities=8% Similarity=-0.088 Sum_probs=42.6
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC--chhhHHHHHHHH
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNI--SDCISCVIVNGF 175 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 175 (343)
+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...|++..+... . +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHH
Confidence 333444444444444444444444443321 344444444444445555555555544444332 1 233444444444
Q ss_pred hcC-CcHHHHHHHHHHHHHc
Q 044084 176 SKR-RAYWAAVKVYEQLISQ 194 (343)
Q Consensus 176 ~~~-~~~~~a~~~~~~~~~~ 194 (343)
... |++++|.+.+++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 444 4444444444444443
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=2.4e-06 Score=62.22 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
...|..+...+...|++++|++.|++..+... -+...|..+..++.+.|++++|...+++..+.... +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45566666666666777777777766666532 24556666666666677777777777766665532 56666667777
Q ss_pred HHhcCcHhHHHHHHHHHHhcC
Q 044084 140 YIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~ 160 (343)
|...|++++|+..|++..+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 777777777777777666544
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=1.9e-06 Score=57.86 Aligned_cols=97 Identities=10% Similarity=-0.004 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc--ChhhHHHHHH
Q 044084 166 CISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK--CVVAYSSMVA 243 (343)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 243 (343)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 345556666666677777777776666553 2344556666666667777777777777766653 23 4566666777
Q ss_pred HHHcc-CChHHHHHHHHHHhhC
Q 044084 244 MYGKT-GRIRDAMRLVAKMKPK 264 (343)
Q Consensus 244 ~~~~~-~~~~~a~~~~~~m~~~ 264 (343)
++... |++++|.+.+++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 77777 7777777777776654
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.57 E-value=2.2e-06 Score=59.54 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=23.2
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 044084 100 SLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESM 156 (343)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (343)
.+...+.+.|++++|+..|++..+..+. +..+|..+..+|...|++++|++.+++.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444444443321 3344444444444444444444444443
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.56 E-value=1.5e-06 Score=60.29 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC--CC----HHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGML--RD----LEVFL 134 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 134 (343)
..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344444444445555555555555444432 113333444444444444444444444444432211 01 33344
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHh
Q 044084 135 KLVLMYIEEGMVEKTLEVVESMKN 158 (343)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~ 158 (343)
.+...+...|++++|.+.|++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.55 E-value=3.5e-06 Score=59.13 Aligned_cols=97 Identities=11% Similarity=-0.017 Sum_probs=49.3
Q ss_pred hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 044084 95 PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNG 174 (343)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (343)
...+..+...+...|+++.|...|.+..+..+. +...+..+..++...|++++|...+++..+.++ .+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Confidence 344445555555555555555555555554322 445555555555555555555555555554433 233344445555
Q ss_pred HhcCCcHHHHHHHHHHHHH
Q 044084 175 FSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~ 193 (343)
+...|++++|...|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.53 E-value=1.4e-06 Score=60.50 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
..+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|...+++...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3444455555555555555555555544432 2333444444455555555555555554443
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=3.3e-06 Score=61.51 Aligned_cols=99 Identities=16% Similarity=0.018 Sum_probs=72.8
Q ss_pred ChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHH
Q 044084 94 DPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVN 173 (343)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (343)
+...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|+..|++..+... .+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3445666777777788888888888887776543 677777777888888888888888887777654 34566777777
Q ss_pred HHhcCCcHHHHHHHHHHHHHc
Q 044084 174 GFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~ 194 (343)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777788888888887777765
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=1.8e-06 Score=59.32 Aligned_cols=89 Identities=18% Similarity=0.046 Sum_probs=39.3
Q ss_pred HHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 044084 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMV 146 (343)
Q Consensus 67 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (343)
...+.+.|++++|+..|++..+... .+...|..+..++...|++++|...+++..+..+. +...+..+..++...|++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 3344444444444444444444321 13334444444444444444444444444443322 344444444444444444
Q ss_pred hHHHHHHHHHH
Q 044084 147 EKTLEVVESMK 157 (343)
Q Consensus 147 ~~a~~~~~~~~ 157 (343)
++|+..|++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=7.4e-06 Score=58.15 Aligned_cols=96 Identities=11% Similarity=-0.052 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc---hhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS---DCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASII 207 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 207 (343)
..+..+...+...|++++|...|++..+.... + ...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 33444444444444444444444444333210 1 2233333444444444444444444443331 11233333344
Q ss_pred HHHHccCChhHHHHHHHHHHH
Q 044084 208 NAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~ 228 (343)
.++...|++++|...|+...+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444443
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.48 E-value=1.7e-06 Score=62.45 Aligned_cols=132 Identities=15% Similarity=0.007 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC-Cc----hhhHHHHHHHHhcCCcHHHHHHHHHHHHHc----CCCC-CHh
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAELN-IS----DCISCVIVNGFSKRRAYWAAVKVYEQLISQ----GCIP-GQV 201 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~ 201 (343)
++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555556666666655554432110 00 124455555566666666666666655432 1000 123
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHc----CCC-cChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 202 TYASIINAYCRIGLYSKAEKVFIEMQQK----GFD-KCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
.+..+...+...|++++|...++...+. +.+ .....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4555566666677777777766665532 111 1134566666777777777777777766553
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.46 E-value=2.9e-06 Score=58.33 Aligned_cols=95 Identities=12% Similarity=0.014 Sum_probs=71.1
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (343)
+..+...+.+.|++++|...+++..+..+. +...|..+..++...|++++|+..|++..+..+ .+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 445556677788888888888888876543 677788888888888888888888888777665 355567777778888
Q ss_pred CCcHHHHHHHHHHHHHc
Q 044084 178 RRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 178 ~~~~~~a~~~~~~~~~~ 194 (343)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888877654
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.41 E-value=5.5e-06 Score=71.22 Aligned_cols=123 Identities=11% Similarity=-0.020 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC--------------hHhHHHHHHHHhcccCHHHHHHHHHHHHHcC
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILED--------------PSVYASLICSFASIAEVKVAEELFKEAEEKG 125 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (343)
...|..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45666777777777777777777777766421111 2344445555555555555555555555543
Q ss_pred CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHH
Q 044084 126 MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (343)
.. +...|..+..+|...|++++|+..|++..+..+ .+...+..+..++...++.+++
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 22 445555555555555555555555555544432 2333444444444444444433
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.40 E-value=4.4e-07 Score=78.42 Aligned_cols=124 Identities=12% Similarity=0.036 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHH
Q 044084 25 YCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICS 104 (343)
Q Consensus 25 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (343)
+..+...+.+.|++++|.+.|++..+.. |.+..+|..+..++.+.|++++|++.+++..+... .+...+..+..+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 83 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 83 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4444556678899999999999987764 33368899999999999999999999999988742 356788888889
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCcHhHHHHHHH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM--YIEEGMVEKTLEVVE 154 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 154 (343)
+...|++++|...+++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998886543 44455555555 888899999999988
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.39 E-value=3.4e-06 Score=60.86 Aligned_cols=95 Identities=14% Similarity=0.051 Sum_probs=41.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcCCC-CC----hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCC-C----CHH
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGIL-ED----PSVYASLICSFASIAEVKVAEELFKEAEEKGML-R----DLE 131 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~ 131 (343)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+.... . ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555555555555555554432100 00 123344444444555555555555444331100 0 123
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHH
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESM 156 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (343)
++..+...+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444555555555555555443
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.39 E-value=6.1e-06 Score=70.93 Aligned_cols=125 Identities=10% Similarity=-0.012 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc--------------hhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS--------------DCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
....+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345667777777788888888888887766443211 245555556666666666666666665554
Q ss_pred CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHH
Q 044084 195 GCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAM 255 (343)
Q Consensus 195 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (343)
. +.+...|..+..+|...|++++|...|+...+.. +.+...+..+..++.+.++.+++.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2344555555566666666666666666655543 223445555555555555555443
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=3e-05 Score=53.58 Aligned_cols=91 Identities=16% Similarity=0.090 Sum_probs=38.6
Q ss_pred HHHhhccCcHHHHHHHHHHHHhcCCCCCh---HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 044084 67 CDSLGKSGRAFEILKFFRDMKEKGILEDP---SVYASLICSFASIAEVKVAEELFKEAEEKGMLRD---LEVFLKLVLMY 140 (343)
Q Consensus 67 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 140 (343)
...+...|++++|.+.|++..+.... +. ..+..+..++...|++++|...++++.+..+. + ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 33344444444444444444433211 11 23333444444444444444444444443321 1 33344444444
Q ss_pred HhcCcHhHHHHHHHHHHhc
Q 044084 141 IEEGMVEKTLEVVESMKNA 159 (343)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~ 159 (343)
...|++++|...|+++...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 4455555555555444443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=1.9e-05 Score=54.58 Aligned_cols=93 Identities=10% Similarity=-0.096 Sum_probs=49.3
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc--hhhHHHHHHHH
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDL---EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS--DCISCVIVNGF 175 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 175 (343)
+...+...|++++|...|+.+.+..+. +. ..+..+..++...|++++|...|++.....+... ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 344455556666666666666554322 22 3555555566666666666666666555432110 23344455555
Q ss_pred hcCCcHHHHHHHHHHHHHc
Q 044084 176 SKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~ 194 (343)
...|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5556666666665555554
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.35 E-value=2.7e-06 Score=73.46 Aligned_cols=124 Identities=13% Similarity=0.044 Sum_probs=99.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044084 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142 (343)
Q Consensus 63 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (343)
+..+...+.+.|++++|++.|++..+... .+..+|..+..++.+.|++++|...+++..+.... +...+..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44455667789999999999999988742 25778999999999999999999999999997643 78899999999999
Q ss_pred cCcHhHHHHHHHHHHhcCCCCchhhHHHHHHH--HhcCCcHHHHHHHHH
Q 044084 143 EGMVEKTLEVVESMKNAELNISDCISCVIVNG--FSKRRAYWAAVKVYE 189 (343)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 189 (343)
.|++++|++.|++..+..+ .+...+..+..+ +...|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999988764 234455555555 788899999999988
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.31 E-value=1.6e-05 Score=66.29 Aligned_cols=124 Identities=12% Similarity=-0.004 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------CCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCC
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKL------------DLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGI 91 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 91 (343)
.+..+...+.+.|++++|...|++..+... ..+|....+|..+..++.+.|++++|++.+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 356666777777888888777777654100 01122234455555555555555555555555554321
Q ss_pred CCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHH
Q 044084 92 LEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKT 149 (343)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (343)
.+...+..+..++...|++++|...|++..+.... +...+..+...+...++.+++
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 13344444555555555555555555555544322 344444444444444444333
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.30 E-value=3.6e-06 Score=57.43 Aligned_cols=86 Identities=8% Similarity=0.017 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHH
Q 044084 36 GDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAE 115 (343)
Q Consensus 36 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 115 (343)
|++++|...|++..+.+.. +|.+..+|..+...+...|++++|++.|++..+.... +...+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4444455555544443210 1222344444555555555555555555554443211 2334444444444555555555
Q ss_pred HHHHHHHH
Q 044084 116 ELFKEAEE 123 (343)
Q Consensus 116 ~~~~~~~~ 123 (343)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=0.00012 Score=64.49 Aligned_cols=173 Identities=7% Similarity=-0.050 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 044084 76 AFEILKFFRDMKEKGILEDPSVYASLICSFASIAE----------VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG- 144 (343)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 144 (343)
.++|++.++++...+.. +...|+.--.++...++ ++++...++.+.+..++ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 45667777776665322 34445554444444444 67777777777776654 6777777777777777
Q ss_pred -cHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC-cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc---------
Q 044084 145 -MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR-AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI--------- 213 (343)
Q Consensus 145 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--------- 213 (343)
+++++++.++++.+.++ -+..+|+.-...+...| .++++.+.++++.+.. +-+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 55777777777777665 45666666666666666 6777777777776654 33555666555554442
Q ss_pred -----CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHH
Q 044084 214 -----GLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRD 253 (343)
Q Consensus 214 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (343)
+.++++.+.++...... +-|...|+-+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45688888888888765 5577888888777777776443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.27 E-value=1.3e-05 Score=66.69 Aligned_cols=98 Identities=9% Similarity=-0.027 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcC---------------CCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAE---------------LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG 195 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (343)
..+..+...+.+.|++++|+..|++..+.- -+.+..+|..+..+|.+.|++++|...+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 446677778888888888888888776521 00122334444444455555555555555544432
Q ss_pred CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 196 CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 196 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
+.+...+..+..+|...|++++|...|+...+.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 122334444444444555555555555544443
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=2.4e-05 Score=56.67 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
..+|..+..+|.+.|++++|+..+++....++ .+...|..+..++...|++++|...|++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34455555555555555555555555555443 33444555555555555555555555555544
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=5.9e-06 Score=68.01 Aligned_cols=148 Identities=11% Similarity=0.027 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 60 THMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 60 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 355667777888888888888888887664 233221 122233333322211 1366677777
Q ss_pred HHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCC-HhhHHHHHHH-HHccCChh
Q 044084 140 YIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPG-QVTYASIINA-YCRIGLYS 217 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~-~~~~~~~~ 217 (343)
|.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888777776654 35566777777777788888888877776654 233 2333333333 22345566
Q ss_pred HHHHHHHHHHHc
Q 044084 218 KAEKVFIEMQQK 229 (343)
Q Consensus 218 ~a~~~~~~~~~~ 229 (343)
.+..+|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 677777776654
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.25 E-value=0.00012 Score=64.58 Aligned_cols=175 Identities=7% Similarity=-0.049 Sum_probs=137.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCc----------HHHHHHHHHHHHhcCCCCChHhHHHHHHHH
Q 044084 36 GDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGR----------AFEILKFFRDMKEKGILEDPSVYASLICSF 105 (343)
Q Consensus 36 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (343)
...++|++.++.+...+. ....+|+.--..+...++ ++++++.++.+.+...+ +..+|+.-...+
T Consensus 43 ~~~eeal~~~~~~l~~nP----~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILGANP----DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCc----hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 345788999999988763 335788877777766666 89999999999987644 677888888888
Q ss_pred hccc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC----
Q 044084 106 ASIA--EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG-MVEKTLEVVESMKNAELNISDCISCVIVNGFSKR---- 178 (343)
Q Consensus 106 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 178 (343)
.+.+ +++++.+.++++.+.... +..+|+.-...+.+.| .++++++.++++.+.++ -+...|+.....+...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccc
Confidence 8888 779999999999998765 8999999888888999 89999999999988876 5677777666555442
Q ss_pred ----------CcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhH
Q 044084 179 ----------RAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSK 218 (343)
Q Consensus 179 ----------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 218 (343)
+.++++.+.+++..... +-+...|.-.-..+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56789999999988764 3456677777667766666443
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.25 E-value=2.6e-05 Score=56.49 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=45.7
Q ss_pred HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 96 SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
..|..+..++.+.|+++.|...+++..+..+. +...|..+..+|...|++++|...|++.....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 45666667777777777777777777776532 56777777777777777777777777776654
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.22 E-value=3.3e-06 Score=57.58 Aligned_cols=84 Identities=13% Similarity=0.220 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHHHhcCC--CCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHH
Q 044084 74 GRAFEILKFFRDMKEKGI--LEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLE 151 (343)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (343)
|++++|+..|++..+.+. +.+...+..+..++...|++++|...+++..+..+. +..++..+..++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555555544320 112233444444455555555555555555544332 34444445555555555555555
Q ss_pred HHHHHHh
Q 044084 152 VVESMKN 158 (343)
Q Consensus 152 ~~~~~~~ 158 (343)
.|++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.17 E-value=0.0001 Score=51.77 Aligned_cols=112 Identities=10% Similarity=0.015 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhc----ccCH
Q 044084 36 GDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFAS----IAEV 111 (343)
Q Consensus 36 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 111 (343)
+++++|.+.|++..+.+... .. |...|...+.+++|+++|++..+.| +...+..|...|.. .++.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~------a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF------GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT------HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCCHh------hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 34566666666666655211 12 5555555556666666666666553 44555555555555 5667
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhcCC
Q 044084 112 KVAEELFKEAEEKGMLRDLEVFLKLVLMYIE----EGMVEKTLEVVESMKNAEL 161 (343)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 161 (343)
++|...|++..+.| ++..+..|...|.. .+++++|.+.|++..+.|.
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777777666654 45566666666666 6677777777777666654
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.16 E-value=4.7e-05 Score=54.21 Aligned_cols=96 Identities=13% Similarity=-0.030 Sum_probs=51.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcCCC-C-----C-----hHhHHHHHHHHhcccCHHHHHHHHHHHHHc------
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGIL-E-----D-----PSVYASLICSFASIAEVKVAEELFKEAEEK------ 124 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 124 (343)
.+......+.+.|++++|+..|++..+.... | + ...|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555556666666666666666554211 0 1 114555555555555666555555555553
Q ss_pred -CCCCCHHHH----HHHHHHHHhcCcHhHHHHHHHHHHh
Q 044084 125 -GMLRDLEVF----LKLVLMYIEEGMVEKTLEVVESMKN 158 (343)
Q Consensus 125 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (343)
.+. +...| .....++...|++++|+..|++..+
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 321 34455 5556666666666666666665543
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=1.5e-05 Score=68.72 Aligned_cols=124 Identities=9% Similarity=-0.000 Sum_probs=84.3
Q ss_pred HHhcCcHhHHHHHHHHHHhcC---CC---C-chhhHHHHHHHHhcCCcHHHHHHHHHHHHHc-----C-CCCC-HhhHHH
Q 044084 140 YIEEGMVEKTLEVVESMKNAE---LN---I-SDCISCVIVNGFSKRRAYWAAVKVYEQLISQ-----G-CIPG-QVTYAS 205 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~---~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~ 205 (343)
+...|++++|+.++++..+.. +- | ...+++.+...|...|++++|..++++.... | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456788888888888765421 11 1 2346788888888888888888888876542 2 1222 356778
Q ss_pred HHHHHHccCChhHHHHHHHHHHHc-----CC--CcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 206 IINAYCRIGLYSKAEKVFIEMQQK-----GF--DKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
|...|...|++++|+.++++..+. |. +....+.+.+-.++...+.+.+|..+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888876542 31 11233455666777777888888888888765
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.12 E-value=5.5e-05 Score=65.16 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=90.6
Q ss_pred HHhcCCcHHHHHHHHHHHHHcC---CC---C-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc-----C--CCcChhhHH
Q 044084 174 GFSKRRAYWAAVKVYEQLISQG---CI---P-GQVTYASIINAYCRIGLYSKAEKVFIEMQQK-----G--FDKCVVAYS 239 (343)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~---~~---p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 239 (343)
.+...|++++|..++++..+.. +. | ...+++.+..+|...|++++|+.++++..+. | .+-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999999877541 12 2 2467889999999999999999999987653 2 122346789
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhC---CCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 240 SMVAMYGKTGRIRDAMRLVAKMKPK---GCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
.|...|...|++++|..++++..+. -+-||.... +.....+..++...|.+++|..+|++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~---------------~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT---------------KDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887642 111221111 1112334455666777788888888876
Q ss_pred h
Q 044084 317 M 317 (343)
Q Consensus 317 ~ 317 (343)
+
T Consensus 463 ~ 463 (490)
T 3n71_A 463 E 463 (490)
T ss_dssp H
T ss_pred H
Confidence 5
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.10 E-value=1.1e-05 Score=66.34 Aligned_cols=127 Identities=11% Similarity=-0.010 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCch------------------hhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISD------------------CISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
+..+...+.+.|++++|...|++..... |+. ..|..+..+|.+.|++++|...+++..+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444555555555555655555554432 111 14555566666666666666666666554
Q ss_pred CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHH-HHccCChHHHHHHHHHHhh
Q 044084 195 GCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAM-YGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 195 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~ 263 (343)
. +.+...+..+..+|...|++++|...|+...+.. +.+...+..+... ....+..+.+...|.+|..
T Consensus 260 ~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 260 E-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 2 2244555566666666666666666666655432 1223333333333 1223344555555555554
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.09 E-value=0.00017 Score=50.65 Aligned_cols=110 Identities=6% Similarity=-0.108 Sum_probs=63.5
Q ss_pred cHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCChhHHH
Q 044084 145 MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCR----IGLYSKAE 220 (343)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~ 220 (343)
++++|++.|++..+.+. +.. . +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45566666666655553 222 1 4445555555566666666666553 34445555555555 56666666
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHc----cCChHHHHHHHHHHhhCC
Q 044084 221 KVFIEMQQKGFDKCVVAYSSMVAMYGK----TGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~ 265 (343)
..|+...+.| ++..+..|...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666654 34555566666665 566677777776666654
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.06 E-value=0.00013 Score=51.99 Aligned_cols=95 Identities=9% Similarity=-0.085 Sum_probs=58.6
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHhcCcHhHHHHHHHHHHhc-------
Q 044084 98 YASLICSFASIAEVKVAEELFKEAEEKGMLR------DL-----EVFLKLVLMYIEEGMVEKTLEVVESMKNA------- 159 (343)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 159 (343)
+......+.+.|++++|...|++..+..+.. +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445566677788888888888877754321 22 26677777777777777777777766654
Q ss_pred CCCCchhhH----HHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 160 ELNISDCIS----CVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 160 ~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
++ -+...| .....++...|++++|+..|++..+
T Consensus 94 ~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 32 233344 5555566666666666666665544
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=4.6e-05 Score=50.95 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 201 VTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 201 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
..+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344455555555666666666666555543 334555555666666666666666666665543
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.93 E-value=7.7e-05 Score=50.39 Aligned_cols=81 Identities=11% Similarity=0.042 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHH
Q 044084 4 QSKLHYYEKMKSAGIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFF 83 (343)
Q Consensus 4 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 83 (343)
++|+..|++..+..+ .+...+..+...+.+.|++++|...|++..+.. |.....|..+..++...|++++|...|
T Consensus 2 ~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD----PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 457777888777643 456777888888888888888888888877654 223567788888888888888888888
Q ss_pred HHHHhc
Q 044084 84 RDMKEK 89 (343)
Q Consensus 84 ~~~~~~ 89 (343)
++..+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877654
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.91 E-value=0.00025 Score=45.26 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=25.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHH
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (343)
.+..+...+...|++++|+..|++..+... .+...+..+...+...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444444444444444444433321 1233333344444444444444444444443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=8.8e-05 Score=49.51 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (343)
+..+...+...|++++|++.|++..+..+ .+...+..+..++...|++++|...+++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33333344444444444444444333322 122333333334444444444444444433
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.83 E-value=0.00026 Score=45.12 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=33.5
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
.+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...|++..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444445555555555555555555554322 44555555555555555555555555555443
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.81 E-value=0.00019 Score=51.02 Aligned_cols=69 Identities=13% Similarity=-0.074 Sum_probs=31.3
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044084 73 SGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEV----------KVAEELFKEAEEKGMLRDLEVFLKLVLMYIE 142 (343)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (343)
.+.+++|++.+++..+.... +...|..+..++...+++ ++|+..|++.++..+. +..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 34455555555555544321 444455444455444433 2444444444444322 34444444444444
Q ss_pred c
Q 044084 143 E 143 (343)
Q Consensus 143 ~ 143 (343)
.
T Consensus 93 l 93 (158)
T 1zu2_A 93 F 93 (158)
T ss_dssp H
T ss_pred h
Confidence 3
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.80 E-value=0.00036 Score=47.00 Aligned_cols=62 Identities=13% Similarity=-0.079 Sum_probs=29.0
Q ss_pred hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 044084 95 PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
...+..+...+...|++++|...+++..+..+. +...|..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444445555555555444443321 34444444555555555555555554443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.75 E-value=0.00027 Score=50.26 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=52.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcH----------HHHHHHHHHHHhcCCCCChHhHHHH
Q 044084 32 FYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRA----------FEILKFFRDMKEKGILEDPSVYASL 101 (343)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l 101 (343)
..+.+.+++|.+.++...+.+ |.+...|..+..++...+++ ++|+..|++.++.+.. +..+|..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~----P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 345566777777777776655 33356677677777666654 4777777777665322 45566667
Q ss_pred HHHHhccc-----------CHHHHHHHHHHHHHc
Q 044084 102 ICSFASIA-----------EVKVAEELFKEAEEK 124 (343)
Q Consensus 102 ~~~~~~~~-----------~~~~a~~~~~~~~~~ 124 (343)
..+|...| ++++|...|++..+.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 77766554 445555555544443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.63 E-value=0.00028 Score=46.26 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 200 QVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 200 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
...+..+..+|...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555666655555555543 23344555555555556666666555555543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00069 Score=44.35 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044084 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192 (343)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (343)
+...+..+...|...|++++|+..|++..+.++ .+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555555544433 233344445555555555555555554443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.55 E-value=0.0038 Score=51.01 Aligned_cols=64 Identities=8% Similarity=0.065 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
++.++..+...+...|++++|...+++....+ |+...|..+...+...|++++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44555555444444455555555555555443 34434444444555555555555555555544
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.42 E-value=0.011 Score=48.28 Aligned_cols=48 Identities=10% Similarity=-0.034 Sum_probs=27.8
Q ss_pred CCChHhHHHHHHHHhc--c---cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044084 92 LEDPSVYASLICSFAS--I---AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140 (343)
Q Consensus 92 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (343)
+.+...|...+++... . .+..+|..+|++..+..+. ....|..+..+|
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4466677776655432 2 2357778888888876533 345555444444
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.33 E-value=0.0021 Score=54.46 Aligned_cols=93 Identities=11% Similarity=-0.032 Sum_probs=61.9
Q ss_pred ccCChhHHHHHHHHHHHc---CCCc----ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhccc
Q 044084 212 RIGLYSKAEKVFIEMQQK---GFDK----CVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK 284 (343)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 284 (343)
..|++++|+.++++..+. -+.| ...+++.|..+|...|++++|..++++..+. .....-..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i------------~~~~lG~~ 377 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP------------YSKHYPVY 377 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHSCSS
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH------------HHHHcCCC
Confidence 457899999999887653 1122 2467899999999999999999999988642 00111112
Q ss_pred ChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 285 NLRQLEKYTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 285 ~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
..+-|..++.|...|...|++++|+.++++..
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 23333335566666667777777777777663
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.24 E-value=0.0019 Score=41.86 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=32.3
Q ss_pred HHHhcccCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 103 CSFASIAEVKVAEELFKEAEEKGMLRDLE-VFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
..+.+.|++++|...+++..+.... +.. .+..+..+|...|++++|++.|++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444556666666666665554432 444 55556666666666666666666655544
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.22 E-value=0.003 Score=53.51 Aligned_cols=56 Identities=16% Similarity=-0.045 Sum_probs=24.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCC---CCC-CCchHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 044084 32 FYKIGDSEKVAALFLECESRK---LDL-TPSSTHMYKILCDSLGKSGRAFEILKFFRDMK 87 (343)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 87 (343)
+.+.|++++|+.++++..+.. ..+ .|....+++.|...|...|++++|+.++++.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 334455555555555443321 111 11223444555555555555555555554443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.22 E-value=0.0012 Score=56.01 Aligned_cols=87 Identities=6% Similarity=-0.080 Sum_probs=68.4
Q ss_pred cCCcHHHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHccCChhHHHHHHHHHHHc-----C--CCcChhhHHHHH
Q 044084 177 KRRAYWAAVKVYEQLISQ---GCIPG----QVTYASIINAYCRIGLYSKAEKVFIEMQQK-----G--FDKCVVAYSSMV 242 (343)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 242 (343)
..|++++|..++++..+. -+.|+ ..+++.+..+|...|++++|+.++++..+. | .+-...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999987653 12222 367889999999999999999999987653 2 112245789999
Q ss_pred HHHHccCChHHHHHHHHHHhh
Q 044084 243 AMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~m~~ 263 (343)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.13 E-value=0.0017 Score=55.08 Aligned_cols=92 Identities=11% Similarity=0.025 Sum_probs=69.6
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcC---CCCC----HhhHHHHHHHHHccCChhHHHHHHHHHHHc-----C--CCcChhh
Q 044084 172 VNGFSKRRAYWAAVKVYEQLISQG---CIPG----QVTYASIINAYCRIGLYSKAEKVFIEMQQK-----G--FDKCVVA 237 (343)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~ 237 (343)
+..+...|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|+.++++..+. | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667889999999999887541 2222 357888889999999999999999887653 2 1122457
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 238 YSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999998888764
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.05 E-value=0.075 Score=41.77 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC-CcH
Q 044084 111 VKVAEELFKEAEEKGMLRD---LEVFLKLVLMYIEE-----GMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR-RAY 181 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 181 (343)
...|...+++..+.. |+ ...|..+...|.+. |+.++|.+.|++..+.++.-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 566777777777754 44 56788888888874 88888888888887766532355666777777774 888
Q ss_pred HHHHHHHHHHHHcCCC
Q 044084 182 WAAVKVYEQLISQGCI 197 (343)
Q Consensus 182 ~~a~~~~~~~~~~~~~ 197 (343)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888876444
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.05 E-value=0.0018 Score=42.04 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=26.7
Q ss_pred HhhccCcHHHHHHHHHHHHhcCCCCChH-hHHHHHHHHhcccCHHHHHHHHHHHHHcC
Q 044084 69 SLGKSGRAFEILKFFRDMKEKGILEDPS-VYASLICSFASIAEVKVAEELFKEAEEKG 125 (343)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (343)
.+...|++++|++.|++..+... .+.. .+..+..++...|++++|...|++..+..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34444555555555555544321 1233 44444455555555555555555555443
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.03 E-value=0.013 Score=54.19 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=99.4
Q ss_pred HHHHHhcCCHHHHHH-HHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhc
Q 044084 29 MEAFYKIGDSEKVAA-LFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFAS 107 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (343)
.......+++++|.+ ++.. ++ + ......++..+.+.|.++.|+++.+. .. .-......
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~-----i~-~---~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~ 664 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN-----VE-G---KDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALK 664 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG-----CC-C---HHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHH
T ss_pred HhHHHHhCCHHHHHHHHHhc-----CC-c---hHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhh
Confidence 344456788888877 5422 11 0 12336777778888888888876532 11 11334567
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHH
Q 044084 108 IAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKV 187 (343)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (343)
.|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++
T Consensus 665 ~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 665 VGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 78999998875432 3788999999999999999999999998753 44455555557777766666
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHH
Q 044084 188 YEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIE 225 (343)
Q Consensus 188 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 225 (343)
-+.....| -++....+|.+.|++++|.+++.+
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555543 123334445556666666665543
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.99 E-value=0.031 Score=51.58 Aligned_cols=155 Identities=11% Similarity=0.119 Sum_probs=102.1
Q ss_pred HhhccCcHHHHHH-HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHh
Q 044084 69 SLGKSGRAFEILK-FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVE 147 (343)
Q Consensus 69 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (343)
.....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+ +.. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHH
Confidence 3345778888766 44211 112233667777788888888876653 211 1134467789999
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044084 148 KTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQ 227 (343)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 227 (343)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 999986544 4566899999999999999999999998754 3445555566777777666665555
Q ss_pred HcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHh
Q 044084 228 QKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
..| -++....+|.+.|++++|.+++.++.
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 544 23444445666777777777766654
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.80 E-value=0.025 Score=36.19 Aligned_cols=49 Identities=4% Similarity=-0.052 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 111 VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
.++|..++++..+..+. ++.....+...+.+.|++++|+..|+++.+..
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555555555554432 45555555555555555555555555555444
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.74 E-value=0.015 Score=40.89 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCCCChHhHHHHHHHHhccc---CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCcHhHHHHH
Q 044084 77 FEILKFFRDMKEKGILEDPSVYASLICSFASIA---EVKVAEELFKEAEEKG-MLRDLEVFLKLVLMYIEEGMVEKTLEV 152 (343)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (343)
..+.+.|.+....|. ++..+...+..++++++ +.+++..+++...+.. +.-....+-.|.-+|.+.|++++|++.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 334444444444333 34444444444555554 4445555555555543 101234444455555566666666666
Q ss_pred HHHHHhcC
Q 044084 153 VESMKNAE 160 (343)
Q Consensus 153 ~~~~~~~~ 160 (343)
++.+.+..
T Consensus 94 ~~~lL~ie 101 (152)
T 1pc2_A 94 VRGLLQTE 101 (152)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 66655544
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.70 E-value=0.034 Score=35.54 Aligned_cols=67 Identities=9% Similarity=0.029 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhcCc---HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC
Q 044084 128 RDLEVFLKLVLMYIEEGM---VEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG 195 (343)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (343)
.++..+..+..++...++ .++|..++++..+.++ -+......+...+...|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456666666666654444 5778888887777665 455566667777777888888888888877763
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.11 Score=37.53 Aligned_cols=130 Identities=10% Similarity=0.040 Sum_probs=87.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcc
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASI 108 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (343)
.....+.|+++.|.++.+.+. + ...|..|.......|+++-|.+.|.+... +..+.-.|.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~------~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~t 73 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN------D---SITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVT 73 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC------C---HHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC------C---HHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHh
Confidence 455668899999998877651 1 46899999999999999999999987643 55565666777
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHH
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVY 188 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (343)
|+.+....+-+.....|- ++.....+.-.|+++++.++|.+..+. |- -+......|..+.|.++.
T Consensus 74 g~~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~---~e------A~~~A~t~g~~~~a~~~~ 138 (177)
T 3mkq_B 74 GDVNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSL---PL------AYAVAKANGDEAAASAFL 138 (177)
T ss_dssp TCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCH---HH------HHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCCh---HH------HHHHHHHcCcHHHHHHHH
Confidence 888777766665555542 344455566778888888888654321 11 111122356677777777
Q ss_pred HHH
Q 044084 189 EQL 191 (343)
Q Consensus 189 ~~~ 191 (343)
+++
T Consensus 139 ~~~ 141 (177)
T 3mkq_B 139 EQA 141 (177)
T ss_dssp HHT
T ss_pred HHh
Confidence 665
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.60 E-value=0.037 Score=38.88 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHhcCCCC--chhhHHHHHHHHhcCCcHHHH
Q 044084 110 EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG---MVEKTLEVVESMKNAELNI--SDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 184 (343)
....+.+-|.+....+. ++..+...+..++++.+ +.++++.+|+...+.+. | ....+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~-p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHccCHHHH
Confidence 34455556666555554 57777777777777777 55677888877776652 2 233344555666777888888
Q ss_pred HHHHHHHHHcCCCCC
Q 044084 185 VKVYEQLISQGCIPG 199 (343)
Q Consensus 185 ~~~~~~~~~~~~~p~ 199 (343)
.+.++.+.+. .|+
T Consensus 91 ~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHhc--CCC
Confidence 8888777776 454
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.41 E-value=0.052 Score=42.66 Aligned_cols=89 Identities=8% Similarity=-0.046 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHhCCCCCC---hhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhcc-
Q 044084 3 SQSKLHYYEKMKSAGIVLD---SGCYCQIMEAFYK-----IGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKS- 73 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 73 (343)
..+|...+++.++.. |+ ...|..+...|.+ .|+.++|.+.|++..+.+...+ ..++......++..
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~---id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD---PDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC---SHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHhc
Confidence 356777777777753 44 5577888888887 4888888888888877664322 45666677777774
Q ss_pred CcHHHHHHHHHHHHhcCCC--CChH
Q 044084 74 GRAFEILKFFRDMKEKGIL--EDPS 96 (343)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~--~~~~ 96 (343)
|+.+++.+.+++....... |+..
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChh
Confidence 8888888888888876554 4443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.41 E-value=0.064 Score=35.06 Aligned_cols=66 Identities=11% Similarity=-0.085 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC------CCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 129 DLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE------LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
+..-+..|...+.+.++++.|...|+...+.. ..+....+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44445555666666666666666665544321 1123344555555555566666666665555544
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.39 E-value=0.12 Score=35.20 Aligned_cols=140 Identities=11% Similarity=0.048 Sum_probs=82.3
Q ss_pred hcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHH
Q 044084 106 ASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAV 185 (343)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (343)
.-.|..++..++..+..+. .+..-+|.++--....-+-+-..++++.+-.. .|. ...|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3446677777777776664 24555555555555555555555555555332 121 1122222222
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 044084 186 KVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKG 265 (343)
Q Consensus 186 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 265 (343)
.-+-.+ ..+...+...+......|+-++-.++...+... .+|++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 222221 123344556667777778888888887775443 35677777788888888888888888888888777
Q ss_pred CC
Q 044084 266 CE 267 (343)
Q Consensus 266 ~~ 267 (343)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.37 E-value=0.072 Score=37.07 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchH
Q 044084 214 GLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNV 270 (343)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 270 (343)
+++++|.++|+.+.+.+-.- ...|-.....-.++|++..|.+++.+.+..+.+|..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 68888888888887653233 677777778888899999999999998887766544
No 229
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.43 Score=40.60 Aligned_cols=311 Identities=9% Similarity=0.088 Sum_probs=168.4
Q ss_pred chhhHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHh----hc
Q 044084 2 NSQSKLHYYEKMKSA-----GIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSL----GK 72 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~ 72 (343)
++++|++.+-.+.+. +..-.......++..|.+.++++...+.+..+........ ..-..+++.+ ..
T Consensus 31 ~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk----~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 31 DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK----LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhc
Confidence 567777776555432 2333456678889999999999998888776655433322 2233333322 22
Q ss_pred cCcHH--HHHHHHHHHHh--cC-CCC---ChHhHHHHHHHHhcccCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHH
Q 044084 73 SGRAF--EILKFFRDMKE--KG-ILE---DPSVYASLICSFASIAEVKVAEELFKEAEEK--GMLRD---LEVFLKLVLM 139 (343)
Q Consensus 73 ~~~~~--~a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~ 139 (343)
....+ .-..+.+.+.. .| +.. .......|...+...|++.+|..++..+... |.... ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22222 22222222111 11 111 1122355778888999999999999988653 22111 4567778899
Q ss_pred HHhcCcHhHHHHHHHHHHh----cCCCCc--hhhHHHHHHHHhcCCcHHHHHHHHHHHHHc-CCCCCHhhHHHH----HH
Q 044084 140 YIEEGMVEKTLEVVESMKN----AELNIS--DCISCVIVNGFSKRRAYWAAVKVYEQLISQ-GCIPGQVTYASI----IN 208 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l----l~ 208 (343)
|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++... ....+...+..+ +.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~ 266 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVY 266 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 9999999999999988742 222222 234566777778889999998888877653 111122222211 11
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHcc--CChHHHHHHHHHHhhCC-C----CchHHHHHHHHHHHh
Q 044084 209 AYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT--GRIRDAMRLVAKMKPKG-C----EPNVWIYNSLMDMHG 281 (343)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~-~----~p~~~~~~~l~~~~~ 281 (343)
+..-.+..+.-..++........-++...|..++.+|... .+++.+...|....... + ......+..|.....
T Consensus 267 ~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ 346 (445)
T 4b4t_P 267 FLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVI 346 (445)
T ss_dssp HHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHH
Confidence 1111222222223333333322235677888888888654 35666666665544321 1 011223344433333
Q ss_pred cccChhHHHh------HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044084 282 RAKNLRQLEK------YTTVISAYNMAREFDMCVKFYNEFRMNG 319 (343)
Q Consensus 282 ~~~~~~~a~~------~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 319 (343)
.++- ..+.+ +..+...+.- ..+++...+.+|...|
T Consensus 347 ehnl-~~i~k~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g 387 (445)
T 4b4t_P 347 EHNL-RVISEYYSRITLLRLNELLDL--TESQTETYISDLVNQG 387 (445)
T ss_dssp HHHH-HHHHHHEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCC
Confidence 2221 11111 4444444322 5678888888886654
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.30 E-value=0.07 Score=34.85 Aligned_cols=61 Identities=13% Similarity=0.012 Sum_probs=27.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhcC------CCCChHhHHHHHHHHhcccCHHHHHHHHHHHHH
Q 044084 63 YKILCDSLGKSGRAFEILKFFRDMKEKG------ILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123 (343)
Q Consensus 63 ~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (343)
+..|...+.+.+++..|..+|+...+.- ..+....+..+..++.+.|+++.|...++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445555555555555555555544320 011223344444444444444444444444444
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.07 E-value=0.11 Score=36.19 Aligned_cols=54 Identities=9% Similarity=-0.040 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCc
Q 044084 179 RAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDK 233 (343)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (343)
+++++|.++|+.+.+.+-.. ...|......=.+.|+++.|.+++......+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56677777777776542222 4444444444556777777777777777766443
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.27 Score=35.50 Aligned_cols=129 Identities=9% Similarity=-0.003 Sum_probs=78.2
Q ss_pred HHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHH
Q 044084 103 CSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYW 182 (343)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (343)
......|+++.|.++.+.+ -+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445667888887776654 2677888888888888888888888877653 334444555567776
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHH
Q 044084 183 AAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKM 261 (343)
Q Consensus 183 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 261 (343)
...++-+.....| -++.....+.-.|+++++.++|.+..+ -|. -+......|..+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 6666655555443 244555556667888888877744222 111 111112245566666666655
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.97 E-value=6.2e-06 Score=68.80 Aligned_cols=252 Identities=12% Similarity=0.179 Sum_probs=142.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
.+..|..|..+..+.+...+|.+-|-+ .+ +| ..|..+|.+..+.|.+++-++.+...++..- ++..=+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A~---Dp---s~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDte 121 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---AD---DP---SSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETE 121 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---CS---CC---CSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---CC---Ch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHH
Confidence 345677788888888877777765521 11 12 2478888888888888888888776655432 3344456
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC--------------------
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE-------------------- 160 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------- 160 (343)
|+-+|++.++..+.++.+. .|+..-...+.+-|...|.++.|.-+|..+....
T Consensus 122 Li~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 122 LIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888887655443322 2555555667777777777777777765543211
Q ss_pred CCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHH
Q 044084 161 LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSS 240 (343)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (343)
-..++.||-.+-.+|...+++.-|.-.--.+.-. || -...++..|-..|.+++.+.+++.-.... ......|+.
T Consensus 195 KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTE 268 (624)
T 3lvg_A 195 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 268 (624)
T ss_dssp TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHH
T ss_pred hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHH
Confidence 0123445666666666666555443332222211 11 12234555666667777666666655322 345666777
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccChhHHHhHHHHHHHHHhcCCHHHHH
Q 044084 241 MVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKNLRQLEKYTTVISAYNMAREFDMCV 309 (343)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~ 309 (343)
|.-.|++- +.++..+.++..-.+ +. . --++++|.+..- |..++-.|.+-.+++.|.
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sr-iN--i---pKviracE~ahL------W~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSR-VN--I---PKVLRAAEQAHL------WAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSS-SC--C---TTTHHHHTTTTC------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHh-cc--H---HHHHHHHHHHhh------HHHHHHHHhcchhHHHHH
Confidence 77666655 345555544433322 11 0 013344433333 455566666666666554
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.41 E-value=0.14 Score=34.62 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=13.1
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 135 KLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
.|.-++.+.|++++|++.++.+.+..
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 34444555555555555555554443
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.16 E-value=0.46 Score=32.45 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=99.0
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHH
Q 044084 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTL 150 (343)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (343)
.-.|..++..+++.+..... +..-||.+|--....-+-+-..++++.+-+. .|. ..+|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 44688888999999887752 5666777776666666766666666655432 232 2445555555
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 044084 151 EVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKG 230 (343)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (343)
..+-.+- .+......-++.+...|.-++..+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 5554432 23345666778888899999999999986543 36788888889999999999999999999988888
Q ss_pred CC
Q 044084 231 FD 232 (343)
Q Consensus 231 ~~ 232 (343)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 54
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.82 Score=41.51 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=77.8
Q ss_pred HHHHHHHHhhccCc-HHHHHHHHHHHHhcCCCCChHhH--HHHHHHHhccc-CHHHHHHHHHHHHHc------CCC-CCH
Q 044084 62 MYKILCDSLGKSGR-AFEILKFFRDMKEKGILEDPSVY--ASLICSFASIA-EVKVAEELFKEAEEK------GML-RDL 130 (343)
Q Consensus 62 ~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~-~~~ 130 (343)
.-..++..+...++ .+.|..+|+++.... |...++ ..++..+...+ +--+|.+++.+..+. ... .+.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 33445555555666 578999999988763 333222 23333333332 223344444443321 111 121
Q ss_pred ----------HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044084 131 ----------EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLI 192 (343)
Q Consensus 131 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (343)
.....-.+.+...|+++.|+++-++....-+ .+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222224556678999999999998877654 456789999999999999999998888763
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.62 E-value=0.63 Score=31.39 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHhcCcHhH---HHHHHHHHHhcCCC-CchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 128 RDLEVFLKLVLMYIEEGMVEK---TLEVVESMKNAELN-ISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
++..+-..+..++.+..+... ++.+++.+...+.+ -.....-.+.-++.+.|+++.|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444444444444444333 44444444443210 01111223334444555555555555555544
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.57 Score=42.52 Aligned_cols=45 Identities=4% Similarity=0.019 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccc
Q 044084 292 YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLS 338 (343)
Q Consensus 292 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 338 (343)
|..+.....|.+++++|.+.|+..+.. +-++..+.-|++.|.+.+
T Consensus 616 WEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 616 WELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999875 458888888999998765
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.39 E-value=0.3 Score=40.71 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=28.9
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044084 171 IVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQ 227 (343)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 227 (343)
++..+...|++.++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555555554432 3344455555555555555555555555443
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.23 E-value=4.9e-05 Score=63.55 Aligned_cols=191 Identities=11% Similarity=0.043 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 044084 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINA 209 (343)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 209 (343)
+.+|..|..++.+.+++.+|++.|-+. -|...|..+|.+..+.|.+++-.+.+....+.. -+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 334555555555555555554433221 122245555555555555555555555444432 222333455555
Q ss_pred HHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC--------------------CCCch
Q 044084 210 YCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK--------------------GCEPN 269 (343)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------------------~~~p~ 269 (343)
|++.++..+-++++. .||..-...+.+-|...|.++.|.-+|..+... .-.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 555555444333221 233333344444444444444443333322110 00236
Q ss_pred HHHHHHHHHHHhcccChhHHHh-----------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 044084 270 VWIYNSLMDMHGRAKNLRQLEK-----------YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSK 336 (343)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~-----------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 336 (343)
+.||..+-.+|...+.+.-|.. ...++.-|-..|.+++-+.+++.-... -+.-...|+-|.-.|+|
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 7789999999999998888766 666777788888888888888876532 13344556666666665
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.05 E-value=0.25 Score=41.20 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh-----CCCCchHHHHHH
Q 044084 203 YASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP-----KGCEPNVWIYNS 275 (343)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 275 (343)
...++.++...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|++..+ .|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3456777888999999999999988775 66888999999999999999999999988754 489998876433
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.00 E-value=2.5 Score=35.88 Aligned_cols=187 Identities=11% Similarity=0.039 Sum_probs=91.5
Q ss_pred cCcHHHHHHHHHHHHhc-----CCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc
Q 044084 73 SGRAFEILKFFRDMKEK-----GILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY----IEE 143 (343)
Q Consensus 73 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 143 (343)
.|+++.|++.+-.+.+. +..........++..|...++++...+.+..+.+..-. .......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36788888777665432 23334556677788888888888877776655542211 122223333322 222
Q ss_pred CcHhHHHH--HHHHHHhcCCCCc--------hhhHHHHHHHHhcCCcHHHHHHHHHHHHHc--CCCCC---HhhHHHHHH
Q 044084 144 GMVEKTLE--VVESMKNAELNIS--------DCISCVIVNGFSKRRAYWAAVKVYEQLISQ--GCIPG---QVTYASIIN 208 (343)
Q Consensus 144 ~~~~~a~~--~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~ll~ 208 (343)
...+.... +.+.. ..+... ......|...+...|++.+|.+++..+... |..+. ...+...++
T Consensus 108 ~~~d~~~~~~~i~~l--~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTRISVIETI--RVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHHHHHHHCC--SSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH--HHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22221111 11111 011110 011234555666667777777776666543 21111 123444556
Q ss_pred HHHccCChhHHHHHHHHHHHc----CCCcC--hhhHHHHHHHHHccCChHHHHHHHHHHh
Q 044084 209 AYCRIGLYSKAEKVFIEMQQK----GFDKC--VVAYSSMVAMYGKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 262 (343)
.|...+++..|..++..+... ..+|+ ...+..++..+...+++.+|...|.++.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666666666666666655321 11121 1234455555556666666665555543
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.96 E-value=1.9 Score=34.41 Aligned_cols=167 Identities=9% Similarity=0.043 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHH----HHHHHHHcCCCCCHhhHHHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK----VYEQLISQGCIPGQVTYASI 206 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~l 206 (343)
..|.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +++-..+.+.+++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4556666777888888888887655321 1233455444433 34555556777887777777
Q ss_pred HHHHHccCChh-HHHHHHHHHHH----cC--CCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 044084 207 INAYCRIGLYS-KAEKVFIEMQQ----KG--FDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDM 279 (343)
Q Consensus 207 l~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 279 (343)
+..+......+ .-.++++.+.+ .| ..-++..+..+...|.+.|++.+|...|-.- -.-|...+..++.-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHH
Confidence 77765533211 22344444442 22 1236788889999999999999998877521 12256777777776
Q ss_pred Hhcc---cChhHHHh-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044084 280 HGRA---KNLRQLEK-YTTVISAYNMAREFDMCVKFYNEFR 316 (343)
Q Consensus 280 ~~~~---~~~~~a~~-~~~l~~~~~~~g~~~~a~~~~~~m~ 316 (343)
+... |...++-- ....+-.|.-.|+...|..+++...
T Consensus 175 w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6665 65555444 4555667778899999999998875
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.55 E-value=0.66 Score=29.70 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHH
Q 044084 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMV 242 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (343)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++|+.++..- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 455566666666666666666666666666666666666666666665442 12233455444
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.23 E-value=3.3 Score=40.03 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc----hhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS----DCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASI 206 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 206 (343)
..|..++..+.+.+.++.+.++-....+...+-+ ...|..++.++...|++++|...+-.+..... -...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 4455666666666666666665554443221111 11355666666666666666666665554422 22344445
Q ss_pred HHHHHccCC
Q 044084 207 INAYCRIGL 215 (343)
Q Consensus 207 l~~~~~~~~ 215 (343)
+...|..|.
T Consensus 978 V~~lce~~~ 986 (1139)
T 4fhn_B 978 VNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhCCC
Confidence 554444443
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.91 E-value=1.1 Score=28.61 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 218 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
+..+-++.+...++.|++....+.+++|.+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444455444444444443
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.69 E-value=3.9 Score=39.53 Aligned_cols=146 Identities=8% Similarity=0.009 Sum_probs=83.2
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCC-----------------
Q 044084 136 LVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIP----------------- 198 (343)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----------------- 198 (343)
++..+...+..+-+.++..-.. .+...--.+..++...|++++|...|.+... |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 3344445555555544332221 1222223455667778888888888866421 1100
Q ss_pred ------CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCc
Q 044084 199 ------GQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC----VVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEP 268 (343)
Q Consensus 199 ------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 268 (343)
-..-|..++..+.+.+.++.+.++-....+..-+.+ ...|..+.+.+...|++++|...+..+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 112256677777778888887777666555421111 125777888888888888888887777654333
Q ss_pred hHHHHHHHHHHHhcccChhHH
Q 044084 269 NVWIYNSLMDMHGRAKNLRQL 289 (343)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a 289 (343)
...+..|+..++..|..+.-
T Consensus 971 -~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhh
Confidence 34455566666655555443
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.68 E-value=1.3 Score=30.02 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 180 AYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
+.-+..+-++.+....+.|++......+++|-+.+++..|.++|+.++..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444455555555555555555555555555555555555555555443
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.65 E-value=4.5 Score=32.62 Aligned_cols=167 Identities=8% Similarity=0.050 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHH----HHHHHHHcCCCCCHhhHHHHH
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVK----VYEQLISQGCIPGQVTYASII 207 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~ll 207 (343)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...+-+ +++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455566667778888888887654321 1223344433333 334445566777777777777
Q ss_pred HHHHccCChh-HHHHHHHHHHH----cC--CCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 044084 208 NAYCRIGLYS-KAEKVFIEMQQ----KG--FDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMH 280 (343)
Q Consensus 208 ~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 280 (343)
..+.....-+ .-..+.+.+.+ .| ..-|+.....+...|.+.+++.+|...|- . |-.+....+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6665544311 11223333332 12 22367778889999999999999988873 2 3455657777766666
Q ss_pred hcccChhHHHh-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044084 281 GRAKNLRQLEK-YTTVISAYNMAREFDMCVKFYNEFRM 317 (343)
Q Consensus 281 ~~~~~~~~a~~-~~~l~~~~~~~g~~~~a~~~~~~m~~ 317 (343)
...+...++-- ....+--|...++...|..+++.+.+
T Consensus 178 ~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55554333332 66677778889999999998877754
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.20 E-value=2.8 Score=35.42 Aligned_cols=63 Identities=8% Similarity=0.089 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMK 87 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 87 (343)
+...+...|.+.|+++.|.+.|.++......+. .....+-.+++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-AKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-SHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455566666666666666666666654332222 224555556666666666666666665553
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.05 E-value=4.4 Score=31.41 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=27.1
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044084 175 FSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 229 (343)
..+.|++++++.....-.+.. +-|...=..++..+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555555544442 233333344555555555555555555555543
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.02 E-value=2.6 Score=28.67 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 148 KTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
+..+-+..+...++.|+.....+.+++|.+.+++..|..+|+-++.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33344444444444555555555555555555555555555554443
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.56 E-value=4.9 Score=33.92 Aligned_cols=97 Identities=8% Similarity=-0.068 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC--chhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC-CCCCHhhHHHH--
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAELNI--SDCISCVIVNGFSKRRAYWAAVKVYEQLISQG-CIPGQVTYASI-- 206 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l-- 206 (343)
+...+...|.+.|+++.|.+.|.++......+ -...+-.+++.+...+++..+...+.+....- -.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667777888888888888888776543322 23346667777777788888877777765431 01222111111
Q ss_pred --HHHHHccCChhHHHHHHHHHHH
Q 044084 207 --INAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 207 --l~~~~~~~~~~~a~~~~~~~~~ 228 (343)
...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112346777777777766554
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.32 E-value=3.7 Score=27.89 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=36.2
Q ss_pred CChHhHHHHHHHHhcccC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 93 EDPSVYASLICSFASIAE---VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
|+..+--.+..++.++.+ ...+..+++.+.+.+..-....+-.|.-++.+.|++++|++..+.+.+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 344433333334444433 34556666666655532234455555666666666666666666666554
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.22 E-value=2.4 Score=30.11 Aligned_cols=63 Identities=11% Similarity=-0.084 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCCch----HHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 044084 25 YCQIMEAFYKIGDSEKVAALFLECESRK-LDLTPSS----THMYKILCDSLGKSGRAFEILKFFRDMK 87 (343)
Q Consensus 25 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~ 87 (343)
+-.-++.+...|.++.|+-+.+.+.... ..++..+ ..++..+.+++...+++..|...|++.+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444555666666666666666554432 2222100 1234445556666666666666666643
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.99 E-value=11 Score=31.42 Aligned_cols=289 Identities=13% Similarity=0.073 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCCchHHHHHHHHHHhhccC-cHHHHHHHHHHHHhcCCCCChHhH--
Q 044084 23 GCYCQIMEAFYKIGDSEKVAALFLECESR-KLDLTPSSTHMYKILCDSLGKSG-RAFEILKFFRDMKEKGILEDPSVY-- 98 (343)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 98 (343)
.....|...|.+.|+.++..+++.....- +..+...+......++..+.... ..+.-.++..+..+.... +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45667889999999999999998776332 11122222455667788776643 344444444444332100 11223
Q ss_pred ----HHHHHHHhcccCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC--CCCchhh
Q 044084 99 ----ASLICSFASIAEVKVAEELFKEAEEKGMLRD-----LEVFLKLVLMYIEEGMVEKTLEVVESMKNAE--LNISDCI 167 (343)
Q Consensus 99 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 167 (343)
..++..|...|++.+|..++..+.+.--..| ..++-.-++.|...+++.++...+....... +.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2578899999999999999998887421212 4556677788999999999999998875422 2122222
Q ss_pred HH----HHHHHHh-cCCcHHHHHHHHHHHHHc-C-C-CC---CHhhHHHHHHHHHccCChhHHHHHHH-HHHHcCCCcCh
Q 044084 168 SC----VIVNGFS-KRRAYWAAVKVYEQLISQ-G-C-IP---GQVTYASIINAYCRIGLYSKAEKVFI-EMQQKGFDKCV 235 (343)
Q Consensus 168 ~~----~l~~~~~-~~~~~~~a~~~~~~~~~~-~-~-~p---~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~ 235 (343)
.. .-...+. ..+++..|...|-+..+. . . .| +...|..+... .. ++..+...++. .....-..|..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l~-~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-ML-GQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-HT-TCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-Hc-CCHHHHHHHhccccccccCCccH
Confidence 11 1122345 789999998887776432 1 0 11 12233332222 22 33333333322 11111124666
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHH---HHHHHHHhcccChhHHHh------HHHHHHHHHhcCCHH
Q 044084 236 VAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIY---NSLMDMHGRAKNLRQLEK------YTTVISAYNMAREFD 306 (343)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~------~~~l~~~~~~~g~~~ 306 (343)
..+..++.+| ..+++.+...++...... +..|.... ..+.+..... .+..... +..+...+.- ..+
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~~Ir~~-~L~~i~~pYsrIsl~~iA~~l~l--s~~ 331 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYDTMLEQ-NLCRIIEPYSRVQVAHVAESIQL--PMP 331 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHHHHHHH-HHHHHHTTCSEEEHHHHHHHHTC--CHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHH-HHHHHhHhhceeeHHHHHHHHCc--CHH
Confidence 6677777765 566787777777765432 44455432 1121111111 1111111 5555555543 678
Q ss_pred HHHHHHHHHHhCC
Q 044084 307 MCVKFYNEFRMNG 319 (343)
Q Consensus 307 ~a~~~~~~m~~~~ 319 (343)
++...+-+|...|
T Consensus 332 evE~~L~~lI~dg 344 (394)
T 3txn_A 332 QVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 8899999997765
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.52 E-value=19 Score=33.81 Aligned_cols=155 Identities=10% Similarity=0.104 Sum_probs=91.2
Q ss_pred HHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCcHhHHHHHHHHHHhcCCCCchhh--HHHHHHHHhcC
Q 044084 103 CSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVL--MYIEEGMVEKTLEVVESMKNAELNISDCI--SCVIVNGFSKR 178 (343)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 178 (343)
..+.-.|+.+....++..+.+.. +..+...+.. ++.-.|+.+.+..+++.+....- |.... -.++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~d-p~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDE-SLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcCC
Confidence 34556677777777777766532 3333333333 34467888888888887765421 22221 12344567778
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCCh-HHHHHH
Q 044084 179 RAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI-RDAMRL 257 (343)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~ 257 (343)
|+.....+++..+.+.. ..+......+.-++...|+.+.+.++++.+.+.+ .|.+.--..+.-+....|.. .++..+
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 88888888888887652 2233322333334445677777777776666544 45555555555555555554 567778
Q ss_pred HHHHhh
Q 044084 258 VAKMKP 263 (343)
Q Consensus 258 ~~~m~~ 263 (343)
+..+..
T Consensus 652 L~~L~~ 657 (963)
T 4ady_A 652 LDPLTK 657 (963)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 888765
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.30 E-value=19 Score=33.73 Aligned_cols=11 Identities=0% Similarity=0.220 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 044084 306 DMCVKFYNEFR 316 (343)
Q Consensus 306 ~~a~~~~~~m~ 316 (343)
.+++.++..+.
T Consensus 646 ~~aid~L~~L~ 656 (963)
T 4ady_A 646 QSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 45555666554
No 259
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=86.76 E-value=2.9 Score=32.87 Aligned_cols=203 Identities=5% Similarity=-0.120 Sum_probs=99.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChH---hHHHHHH
Q 044084 27 QIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPS---VYASLIC 103 (343)
Q Consensus 27 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~ 103 (343)
+.+...+..|+.+-+..+++. +..++..+ -++ .+...+..|+.+-+ +.+.+.|..++.. -++ .+.
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~--g~t-~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t-~L~ 100 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNA----GALKNLLE--NEF-PLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNT-ALY 100 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT----TGGGSCCT--TCC-HHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCC-HHH
T ss_pred CHHHHHHHcCCHHHHHHHHhC----CCCCCCCC--CCC-HHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCc-HHH
Confidence 345566678888776666554 43332211 122 33444566766544 4444556554432 223 334
Q ss_pred HHhcccCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC-ch-hhHHHHHHHHhcC
Q 044084 104 SFASIAEVKVAEELFKEAEEKGMLRDL---EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNI-SD-CISCVIVNGFSKR 178 (343)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~ 178 (343)
..+..|+.+-+.-++ +.|..++. .-+.+.+...+..|+.+-+. .+.+.+..+ +. .-.+ .+...+..
T Consensus 101 ~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t-~L~~A~~~ 171 (285)
T 3kea_A 101 YAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLS-CIHITIKN 171 (285)
T ss_dssp HHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHH-HHHHHHHT
T ss_pred HHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCcc-HHHHHHHc
Confidence 445667766554444 44544332 12234455566677765444 444444333 21 2233 34445567
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHH
Q 044084 179 RAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLV 258 (343)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (343)
|+.+-+.-+++.-..-.. .+..-.+..+...+..|+. ++.+.+.+.|..++..... -...|+.+-+.-++
T Consensus 172 g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll 241 (285)
T 3kea_A 172 GHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLE-----NVLLDDAEIAKMII 241 (285)
T ss_dssp TCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHH
Confidence 888777666665333221 1212222223333445664 4555566777777665432 14466665555554
Q ss_pred HH
Q 044084 259 AK 260 (343)
Q Consensus 259 ~~ 260 (343)
+.
T Consensus 242 ~~ 243 (285)
T 3kea_A 242 EK 243 (285)
T ss_dssp HH
T ss_pred Hc
Confidence 44
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=86.39 E-value=3.5 Score=31.95 Aligned_cols=49 Identities=14% Similarity=0.015 Sum_probs=24.7
Q ss_pred HccCChhHHHHHHHHHHHcCCCcChhh--HHHHHHHHHccCChHHHHHHHH
Q 044084 211 CRIGLYSKAEKVFIEMQQKGFDKCVVA--YSSMVAMYGKTGRIRDAMRLVA 259 (343)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 259 (343)
+..++.....++.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344555555666666677665554321 1122333445666655444443
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.37 E-value=13 Score=29.96 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH----HHHHHHhcCCCCChHhH
Q 044084 23 GCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK----FFRDMKEKGILEDPSVY 98 (343)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~ 98 (343)
.+|.++..-|.+.+++++|.+++-.- ...+.+.|+...+-+ +++-+.+.++++|....
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G------------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~ 97 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV------------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASR 97 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 35666666677777777777765331 122233454444333 33555556777787777
Q ss_pred HHHHHHHhcccCHH-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHH
Q 044084 99 ASLICSFASIAEVK-VAEELFKEAE----EKG--MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVI 171 (343)
Q Consensus 99 ~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (343)
..++..+.....-+ .-..+.++++ +.| ..-|+.....+...|.+.+++.+|...|- .+..++...+..+
T Consensus 98 ~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~m 173 (336)
T 3lpz_A 98 GKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARM 173 (336)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHH
Confidence 77777666554311 1122222222 333 22367788888888888888888877762 1322333445444
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 044084 172 VNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (343)
+.-+...+... .++...-..++. |...+++..|..+++...+
T Consensus 174 L~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 174 EYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 33333222210 122233333443 4556788888777666553
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.02 E-value=5.6 Score=25.38 Aligned_cols=85 Identities=14% Similarity=0.019 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHH
Q 044084 179 RAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLV 258 (343)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (343)
...++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+ ..||...|-+|.. .+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345666666666666542 2222222234566777777777665432 2567776666654 3677777777777
Q ss_pred HHHhhCCCCchHHH
Q 044084 259 AKMKPKGCEPNVWI 272 (343)
Q Consensus 259 ~~m~~~~~~p~~~~ 272 (343)
.++...| .|....
T Consensus 92 ~~la~sg-~p~~q~ 104 (115)
T 2uwj_G 92 AGLGGSS-DPALAD 104 (115)
T ss_dssp HHHHTCS-SHHHHH
T ss_pred HHHHhCC-CHHHHH
Confidence 6666654 344333
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.00 E-value=8.4 Score=27.37 Aligned_cols=128 Identities=10% Similarity=0.082 Sum_probs=63.9
Q ss_pred cCCCCCHHH--HHHHHHHHHhcCcHhHHHHHHHHHHhcC-CCCch-------hhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044084 124 KGMLRDLEV--FLKLVLMYIEEGMVEKTLEVVESMKNAE-LNISD-------CISCVIVNGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 124 ~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (343)
.|+.|.... +-.-++.+...+.++.|+-+.+.+.... ..++. .++..+.+++...+++.+|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344443333 3344666777788888887777654321 11221 1345566777788888888888888654
Q ss_pred cC-CCCCH-hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 194 QG-CIPGQ-VTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 194 ~~-~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
.. .-+.. .+...+- ....... ......+...--.+..+|.+.+++++|+.+++.+..+
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 31 11111 1111110 0000000 0112234455556888999999999999988876544
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.79 E-value=7.3 Score=26.49 Aligned_cols=74 Identities=9% Similarity=0.049 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCc---HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCH
Q 044084 125 GMLRDLEVFLKLVLMYIEEGM---VEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQ 200 (343)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 200 (343)
+..|+..+--.+..++.+..+ ..+++.+++.+.+.+..-....+--+.-++.+.|+++.|.+..+.+.+. .|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 334566666666666666654 3456677777665543122333445556677777777777777777765 4543
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=84.66 E-value=4.2 Score=33.21 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=42.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCC--hHHHHHHHHHHhhCCCCchHHHHHHH
Q 044084 203 YASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR--IRDAMRLVAKMKPKGCEPNVWIYNSL 276 (343)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l 276 (343)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+...|+-+.......+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 466777788888888888888777532211 12334444445444332 34566777777766665544443333
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.61 E-value=5.9 Score=25.32 Aligned_cols=86 Identities=10% Similarity=0.031 Sum_probs=51.8
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHH
Q 044084 179 RAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLV 258 (343)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (343)
...++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+ ..||...|-+|.. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 456777777777766542 2222222244567778888887765443 3577777766654 3677777777777
Q ss_pred HHHhhCCCCchHHHH
Q 044084 259 AKMKPKGCEPNVWIY 273 (343)
Q Consensus 259 ~~m~~~~~~p~~~~~ 273 (343)
.++...| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 7776664 3444333
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.17 E-value=9.2 Score=26.38 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcC
Q 044084 112 KVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAE 160 (343)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (343)
.++..+++.+.+.+..-.....-.|.-++.+.|++++|++..+.+.+..
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444555555544332223333344445555555555555555555443
No 268
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=80.78 E-value=11 Score=25.54 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC--cHHHHHHHHHHHHHcCC
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR--AYWAAVKVYEQLISQGC 196 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 196 (343)
...++.-|...|+.++|.+.++++..... -...+...+..++-+.+ ..+.+.+++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34566667777777777777777642211 11222333444444432 23556666666665554
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.75 E-value=8.8 Score=24.55 Aligned_cols=80 Identities=11% Similarity=-0.041 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHH
Q 044084 36 GDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAE 115 (343)
Q Consensus 36 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 115 (343)
...++|..+-+.+...+. . ..+--+-+..+...|++++|..+.+.+ ..||...|-.|- -.+.|..+.+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~---E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le 89 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--E---EAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALE 89 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--H---HHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--H---HHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHH
Confidence 356777777777766553 1 222223345567788888888776544 367777776553 44777777777
Q ss_pred HHHHHHHHcCC
Q 044084 116 ELFKEAEEKGM 126 (343)
Q Consensus 116 ~~~~~~~~~~~ 126 (343)
.-+.++...|-
T Consensus 90 ~rL~~la~sg~ 100 (116)
T 2p58_C 90 SRLNRLARSQD 100 (116)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHHhCCC
Confidence 77777766653
No 270
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=80.67 E-value=3.1 Score=31.32 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=25.1
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCcChhhH--HHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 207 INAYCRIGLYSKAEKVFIEMQQKGFDKCVVAY--SSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
+...+..|+.+-+..+ .+.|..++.... .+-+....+.|+.+-+..+++...+.
T Consensus 181 L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLL----LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHHTCHHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 3444556676544433 344544442211 12334445667776666665554443
No 271
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=79.88 E-value=23 Score=28.74 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 044084 25 YCQIMEAFYKIGDSEKVAALFLEC 48 (343)
Q Consensus 25 ~~~l~~~~~~~~~~~~a~~~~~~~ 48 (343)
...++.-|...|+.++|.+.++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 456667777777777777777665
No 272
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=79.28 E-value=10 Score=28.43 Aligned_cols=85 Identities=8% Similarity=-0.122 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHh--HHHHHHHHh
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSV--YASLICSFA 106 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 106 (343)
+...++.|+.+.+..+++.+.+.+..++..+..-++. +...+..|+.+ +++.+.+.|..++... -...+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 4455667888777777776666655544322112222 22333445543 3444444554443211 112233334
Q ss_pred cccCHHHHHHHH
Q 044084 107 SIAEVKVAEELF 118 (343)
Q Consensus 107 ~~~~~~~a~~~~ 118 (343)
..|+.+.+..++
T Consensus 88 ~~~~~~~~~~Ll 99 (241)
T 1k1a_A 88 EHRSPTCLRALL 99 (241)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 455555444443
No 273
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=78.59 E-value=14 Score=25.77 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC--cHHHHHHHHHHHHHcCC
Q 044084 133 FLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR--AYWAAVKVYEQLISQGC 196 (343)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 196 (343)
...++.-|...|+.++|.+.++++..... -...+..++..++-+.+ ..+.+.+++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 44566677777777777777777642211 11223334444444422 23456666666665554
No 274
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=78.42 E-value=12 Score=28.04 Aligned_cols=185 Identities=10% Similarity=-0.056 Sum_probs=86.6
Q ss_pred HHHhhccCcHHHHHHHHHHHHhcCCCCChHh--HHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHh
Q 044084 67 CDSLGKSGRAFEILKFFRDMKEKGILEDPSV--YASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV--FLKLVLMYIE 142 (343)
Q Consensus 67 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 142 (343)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3444567888888888877766665444321 112344455667765 4444555665443211 1123444556
Q ss_pred cCcHhHHHHHHHHHHhcCCCC---chhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhh---HHHHHHHHHccCCh
Q 044084 143 EGMVEKTLEVVESMKNAELNI---SDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVT---YASIINAYCRIGLY 216 (343)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~ 216 (343)
.|+.+-+..+++.....+..+ +....+.+..+ +..|+.+ +++.+.+.|..++... -...+...+..|+.
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA-VNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCcHHHHH-HHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 777766666555543211111 22222333333 3445544 4445555554443221 12233444556776
Q ss_pred hHHHHHHHHHHHcCCCcChhh--HHHHHHHHHccCChHHHHHHHHHHhhCCCCc
Q 044084 217 SKAEKVFIEMQQKGFDKCVVA--YSSMVAMYGKTGRIRDAMRLVAKMKPKGCEP 268 (343)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 268 (343)
+-+. .+.+.|..++... -.+.+...+..|+.+-+. .+.+.|..|
T Consensus 164 ~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~ga~~ 209 (241)
T 1k1a_A 164 SMVQ----LLLQHGANVNAQMYSGSSALHSASGRGLLPLVR----TLVRSGADS 209 (241)
T ss_dssp HHHH----HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH----HHHHTTCCT
T ss_pred HHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH----HHHhcCCCC
Confidence 5444 4445555543321 112233334556655433 334445444
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.88 E-value=11 Score=24.06 Aligned_cols=77 Identities=12% Similarity=-0.102 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHH
Q 044084 111 VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQ 190 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (343)
.++|..+-+.+...+. ...+--+-+..+...|++++|..+.+... .||...|-++.. .+.|..+++...+.+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4555555554444332 11122222334455566666655544332 245444444332 344555555555555
Q ss_pred HHHcC
Q 044084 191 LISQG 195 (343)
Q Consensus 191 ~~~~~ 195 (343)
+..+|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 55444
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.20 E-value=28 Score=27.80 Aligned_cols=113 Identities=12% Similarity=0.001 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH----HHHHHHhcCCCCChHhHH
Q 044084 24 CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK----FFRDMKEKGILEDPSVYA 99 (343)
Q Consensus 24 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~ 99 (343)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|-+ +++-+.+.+++++.....
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~ 96 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVA 96 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4555555555555665555554321 222334455544444 345555567777777777
Q ss_pred HHHHHHhcccC-----HHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCcHhHHHHHHH
Q 044084 100 SLICSFASIAE-----VKVAEELFKEAEEKGM--LRDLEVFLKLVLMYIEEGMVEKTLEVVE 154 (343)
Q Consensus 100 ~l~~~~~~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (343)
.++..+..... .+-.......-.+.|- .-++.....+...|.+.+++.+|...|-
T Consensus 97 rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 97 RLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 77776655321 1222222333333332 2367888888888888888888777664
No 277
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.49 E-value=17 Score=25.03 Aligned_cols=72 Identities=8% Similarity=0.031 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHhcCc---HhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCH
Q 044084 127 LRDLEVFLKLVLMYIEEGM---VEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQ 200 (343)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 200 (343)
.|+..+--.+..++.+..+ ..+++.+++.+...+..-.....-.+.-++.+.|+++.|.+..+.+.+. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 4666676667777777664 3456777777766543222333344566777888888888888887776 4543
No 278
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=74.48 E-value=14 Score=24.98 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=33.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhccc--CHHHHHHHHHHHHHcCCC
Q 044084 62 MYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIA--EVKVAEELFKEAEEKGML 127 (343)
Q Consensus 62 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 127 (343)
....++.-|...|+.++|...++++...... .......+..++-+.+ ..+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3455666677777777777777766421110 1122233333444432 234556666666665554
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.71 E-value=24 Score=25.96 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=42.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC
Q 044084 108 IAEVKVAEELFKEAEEKGMLRD-LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNI 163 (343)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (343)
.+.......+|..|...|+... ...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446688888888888776543 5667777778888888888888888888777666
No 280
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=72.98 E-value=9.4 Score=24.26 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHH
Q 044084 37 DSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAF 77 (343)
Q Consensus 37 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 77 (343)
..++|.++++.+..+|. .+|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~-------~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS-------QALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCT-------THHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcCh-------HHHHHHHHHHHHcCcHH
Confidence 44555555555555441 24555555554444433
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=72.75 E-value=21 Score=24.89 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhccc--CHHHHHHHHHHHHHcCCCC
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIA--EVKVAEELFKEAEEKGMLR 128 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~ 128 (343)
.....++.-|...|+.++|...++++...... ...+...+..++-+.+ ..+.+..++..+...++-+
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34456677777777777777777776421110 1222333333444322 2445566666666655543
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.82 E-value=10 Score=29.25 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=13.9
Q ss_pred HccCChHHHHHHHHHHhhCCCCch
Q 044084 246 GKTGRIRDAMRLVAKMKPKGCEPN 269 (343)
Q Consensus 246 ~~~~~~~~a~~~~~~m~~~~~~p~ 269 (343)
+..++.....++++.+.+.|..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHccccchHHHHHHHHHHcCCCCC
Confidence 345555555566666666665544
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.68 E-value=28 Score=25.68 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCC-hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCC
Q 044084 57 PSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILED-PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRD 129 (343)
Q Consensus 57 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (343)
+.-...|...++.+ ..+....+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 77 ~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 77 PRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33345555555554 23446677778888877765433 34566677777777888888888888777776664
No 284
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.58 E-value=34 Score=26.62 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=71.8
Q ss_pred HHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCC--CchhhHHHHHHHHhcCCc
Q 044084 103 CSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELN--ISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 180 (343)
....+.|+++.+++....-++..+. |...-..|+..+|-.|+++.|.+-++...+..+. +....|..+|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~------- 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK------- 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH-------
Confidence 3456778888888888888877654 8888888888899999999998888887765532 11112333332
Q ss_pred HHHHHHHHHHHHHcCCCC-----CHhhHHHHHHHHH--ccCChhHHHHHHHHHHHc
Q 044084 181 YWAAVKVYEQLISQGCIP-----GQVTYASIINAYC--RIGLYSKAEKVFIEMQQK 229 (343)
Q Consensus 181 ~~~a~~~~~~~~~~~~~p-----~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 229 (343)
|+..=.+....+-.| ...-...++.+.. ..|+.++|..+-..+.+.
T Consensus 77 ---aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 ---AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222232222222 2223344555443 458888888888877654
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=71.48 E-value=27 Score=25.59 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=27.0
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc-----HhHHHHHHHHHHhcCC
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM-----VEKTLEVVESMKNAEL 161 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 161 (343)
.+.+.|+-.+.+|.+.| .|....-..++.+.-..|. ...|...++.....|.
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 56666666666777666 5444444444444444443 2334444455555554
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=70.28 E-value=33 Score=26.04 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=51.9
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhc--CCCC----ChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044084 66 LCDSLGKSGRAFEILKFFRDMKEK--GILE----DPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLM 139 (343)
Q Consensus 66 li~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (343)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 356667778888888887766542 2221 1112222333333333444444555555 32 3456667777788
Q ss_pred HHhcCcHhHHHHHHHHHH
Q 044084 140 YIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~ 157 (343)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 888899999988886654
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=70.22 E-value=17 Score=28.33 Aligned_cols=182 Identities=7% Similarity=-0.067 Sum_probs=85.6
Q ss_pred HhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCc
Q 044084 69 SLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDL---EVFLKLVLMYIEEGM 145 (343)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 145 (343)
..+..|+.+-+..+ .+.|..++...-.+.+...+..|+.+-+. .+.+.|..++. .-+ +.+...+..|+
T Consensus 37 ~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~-t~L~~A~~~g~ 107 (285)
T 3kea_A 37 YAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGN-TALYYAVDSGN 107 (285)
T ss_dssp HHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSC-CHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCC-cHHHHHHHcCC
Confidence 34456776654444 44454443322233445556677765444 44455654432 112 23344556677
Q ss_pred HhHHHHHHHHHHhcCCCCch---hhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCChhHHHH
Q 044084 146 VEKTLEVVESMKNAELNISD---CISCVIVNGFSKRRAYWAAVKVYEQLISQGCIP-GQVTYASIINAYCRIGLYSKAEK 221 (343)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 221 (343)
.+-+..+++. |..++. .-+...+...+..|+.+-+ +.+.+.|..+ +...-...+...+..|+.+-+..
T Consensus 108 ~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 108 MQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHH
Confidence 6655555544 332222 2222334444556766544 4444444333 22122334455567788776666
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHH
Q 044084 222 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWI 272 (343)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 272 (343)
+++.-..... .+..-++..+...+..|+. ++.+.+.+.|..|+...
T Consensus 180 Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 180 LLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 6655333221 1111122222233345553 45555666677666543
No 288
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=69.33 E-value=22 Score=24.48 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=15.8
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (343)
+..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333444444444444443334444444444444444
No 289
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=68.16 E-value=18 Score=22.60 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHhCC
Q 044084 36 GDSEKVAALFLECESRK 52 (343)
Q Consensus 36 ~~~~~a~~~~~~~~~~~ 52 (343)
...++|..+++.+..+|
T Consensus 50 t~~~kar~Lld~l~~kG 66 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKD 66 (94)
T ss_dssp SHHHHHHHHHHHHTTSC
T ss_pred ChHHHHHHHHHHHHHcC
Confidence 34444555554444433
No 290
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=67.58 E-value=19 Score=24.50 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=25.7
Q ss_pred HhcCCCCChHhHHHHHHHHhccc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 044084 87 KEKGILEDPSVYASLICSFASIA-EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM 145 (343)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (343)
.+.|.+++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 10 ~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 10 RKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 344444433222 2333333333 344555555555555444444444444455555443
No 291
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=67.31 E-value=21 Score=24.81 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=28.5
Q ss_pred HHhcCCCCChHhHHHHHHHHhccc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 044084 86 MKEKGILEDPSVYASLICSFASIA-EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM 145 (343)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (343)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 4444555443322 2333443443 444555566555555544455555555555555554
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=66.45 E-value=40 Score=25.57 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=42.3
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhc--CCCC----chhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 044084 136 LVLMYIEEGMVEKTLEVVESMKNA--ELNI----SDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINA 209 (343)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 209 (343)
-++.+....++++|.+++++.... +.+. ........+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 456667777777777777765431 1111 0111222222222222223333333333 22 3344445555566
Q ss_pred HHccCChhHHHHHHHHHHH
Q 044084 210 YCRIGLYSKAEKVFIEMQQ 228 (343)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~ 228 (343)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6666666666666654443
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=66.27 E-value=3.9 Score=31.39 Aligned_cols=57 Identities=18% Similarity=0.097 Sum_probs=29.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHhh--ccCcHHHHHHHHHH
Q 044084 29 MEAFYKIGDSEKVAALFLECESRKLDLTPSS----THMYKILCDSLG--KSGRAFEILKFFRD 85 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~--~~~~~~~a~~~~~~ 85 (343)
+...++.|+.+....+++.+.+.+...+..+ ..-++.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4455567777777777776666555444221 012233333332 45666555555544
No 294
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=65.37 E-value=18 Score=25.13 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=29.7
Q ss_pred HHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 044084 86 MKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM 145 (343)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (343)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44455554332 223344444444455666666666665555555555555566665554
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=64.33 E-value=15 Score=26.56 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=9.1
Q ss_pred HHHhcCCHHHHHHHHH
Q 044084 31 AFYKIGDSEKVAALFL 46 (343)
Q Consensus 31 ~~~~~~~~~~a~~~~~ 46 (343)
..+..|+.+....++.
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 11 EAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHH
Confidence 3445666666665554
No 296
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=63.67 E-value=17 Score=25.07 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044084 111 VKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (343)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555554444444444444444444444
No 297
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.68 E-value=28 Score=24.65 Aligned_cols=73 Identities=4% Similarity=-0.034 Sum_probs=53.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChH
Q 044084 19 VLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPS 96 (343)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (343)
.-|+......+...-.. +.+.++|..|..+++-..- ...|......+-..|++.+|.++|+.-.+.+..|-..
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~--AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSL--AQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 34555444444332223 3477889999998887653 4678888888999999999999999999998888664
No 298
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.43 E-value=70 Score=26.57 Aligned_cols=167 Identities=10% Similarity=0.053 Sum_probs=104.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhc-CCCC---ChHhHHHHHHHHhccc-CHHHHHHHHHHHHHcCCCC-----CH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEK-GILE---DPSVYASLICSFASIA-EVKVAEELFKEAEEKGMLR-----DL 130 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~-----~~ 130 (343)
.+...|...|.+.|+.++..+++.....- +..| .......++..+.... ..+.-.++..+..+..-.- ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999998876542 1122 2233556777776643 3343344444333211110 11
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc-----hhhHHHHHHHHhcCCcHHHHHHHHHHHHHc--CCCCCHhhH
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS-----DCISCVIVNGFSKRRAYWAAVKVYEQLISQ--GCIPGQVTY 203 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~ 203 (343)
.+=..++..|...|++.+|.+++.++.+.-...| ...+..-+..|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1223688999999999999999998876422222 223556677888899999999999887653 232333332
Q ss_pred HHH----HHHHH-ccCChhHHHHHHHHHH
Q 044084 204 ASI----INAYC-RIGLYSKAEKVFIEMQ 227 (343)
Q Consensus 204 ~~l----l~~~~-~~~~~~~a~~~~~~~~ 227 (343)
..+ ...+. ..+++..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 221 12245 6889999988877654
No 299
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=60.80 E-value=35 Score=23.65 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=15.4
Q ss_pred cHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC
Q 044084 145 MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR 179 (343)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (343)
..-.|.++++.+.+.++..+..|.---+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554444344433333334444433
No 300
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=60.41 E-value=49 Score=24.51 Aligned_cols=53 Identities=8% Similarity=0.065 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc-----HhHHHHHHHHHHhcCC
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM-----VEKTLEVVESMKNAEL 161 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 161 (343)
.+.+.|+-.+.+|++.|-.|....-..++.+.-..|. ...|...++.....|.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4566666666666666654443333333333333332 2333444444444444
No 301
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=60.08 E-value=7.4 Score=22.07 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=13.0
Q ss_pred chhhHHHHHHHHHhCC-CCCC
Q 044084 2 NSQSKLHYYEKMKSAG-IVLD 21 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~-~~~~ 21 (343)
|++.|+..|.++...| ++|+
T Consensus 35 d~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGG
T ss_pred CHHHHHHHHHHHHHcCCCCHH
Confidence 5667777777776654 5444
No 302
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=59.70 E-value=34 Score=23.18 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=23.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhc
Q 044084 121 AEEKGMLRDLEVFLKLVLMYIEEG-MVEKTLEVVESMKNAELNISDCISCVIVNGFSK 177 (343)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (343)
+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.++..+..|.---+..+..
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 33445443322 223333343333 444555555555554444444333333333333
No 303
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=59.46 E-value=24 Score=26.15 Aligned_cols=15 Identities=13% Similarity=-0.073 Sum_probs=7.0
Q ss_pred HHHccCChHHHHHHH
Q 044084 244 MYGKTGRIRDAMRLV 258 (343)
Q Consensus 244 ~~~~~~~~~~a~~~~ 258 (343)
..+..|+.+-+..++
T Consensus 183 ~A~~~~~~~~v~~Ll 197 (240)
T 3eu9_A 183 WAVLAGNTTVISLLL 197 (240)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 334555555444443
No 304
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=58.86 E-value=51 Score=24.16 Aligned_cols=32 Identities=9% Similarity=-0.140 Sum_probs=16.1
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (343)
.+.+.|+-.+.+|++.|-.|....-..++.+.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45666666666666665444333333333333
No 305
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=58.14 E-value=30 Score=24.43 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHHHHH-HHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCcHh
Q 044084 77 FEILKFFRD-MKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEK--GMLRDLEVFLKLVLMYIEEGMVE 147 (343)
Q Consensus 77 ~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 147 (343)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. ++..+..|...-+..+...|-..
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 334433333 34456665443 334555566666666777777777766 55556666556666677666543
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.93 E-value=47 Score=23.18 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC
Q 044084 114 AEELFKEAEEKGMLRD-LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNI 163 (343)
Q Consensus 114 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (343)
...+|..|...|+... ...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5556666665554432 4445555555566666666666666655555444
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=56.51 E-value=47 Score=23.01 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=22.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCch
Q 044084 120 EAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISD 165 (343)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (343)
.+.+.|+.+ ...-..++..+...+..-.|.++++.+.+.++..+.
T Consensus 17 ~l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~ 61 (150)
T 2xig_A 17 SIKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSI 61 (150)
T ss_dssp HHHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCH
T ss_pred HHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH
Confidence 344555543 333344455555555556666666666655443443
No 308
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=56.19 E-value=34 Score=24.63 Aligned_cols=160 Identities=11% Similarity=-0.037 Sum_probs=83.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHh---HHHHHHHHh-
Q 044084 31 AFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSV---YASLICSFA- 106 (343)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~- 106 (343)
..++.|+++....++.. ++... .+..-++ .+...+..|+.+.-.++.+.+.+.|..++... .+.|..++.
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~~~-~~~~g~T-~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYEDK-ESVLKSN-ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSSCH-HHHHTTT-HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc----Ccccc-cccCCCC-HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 44577888887666643 22211 0011233 34444566777766777888888887665432 233332222
Q ss_pred cccCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCcH-hHHHHHHHHHHh-cCCCCchh---hHHHHHHHHhcC
Q 044084 107 SIAEVKVAEELFKEAEEKGMLRDLE---VFLKLVLMYIEEGMV-EKTLEVVESMKN-AELNISDC---ISCVIVNGFSKR 178 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~-~~a~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~ 178 (343)
...+.....++.+.+.+.|..++.. -.++.+...+..+.. ..-..+++.+.+ .|..++.. -.+. +....+.
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp-L~~A~~~ 164 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA-LEFVKRC 164 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH-HHHHHTT
T ss_pred CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH-HHHHHHc
Confidence 2234555567778888888665432 221233333333332 344566777776 66555432 2223 3344566
Q ss_pred CcHHHHHHHHHHHHHcCCC
Q 044084 179 RAYWAAVKVYEQLISQGCI 197 (343)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~ 197 (343)
|..+.+.-+.+.+.+.+++
T Consensus 165 ~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 165 QKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 7776655555555555544
No 309
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=55.63 E-value=16 Score=20.65 Aligned_cols=29 Identities=10% Similarity=-0.050 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 044084 147 EKTLEVVESMKNAELNISDCISCVIVNGF 175 (343)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (343)
++|.+.|.+|++..-.++..+|.-.++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555554433324455565555555
No 310
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=55.07 E-value=37 Score=23.96 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=37.8
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhc--CCCCchhhHHHHHHHHhcCCc
Q 044084 120 EAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNA--ELNISDCISCVIVNGFSKRRA 180 (343)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 180 (343)
.+.+.|+.++. .-..++..+...++.-.|.++++.+.+. ++..+..|.---+..+...|-
T Consensus 23 ~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 23 ILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 45556777554 3455666666667777788888888776 555555554445566666554
No 311
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=54.76 E-value=31 Score=23.78 Aligned_cols=56 Identities=4% Similarity=-0.052 Sum_probs=24.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcC
Q 044084 121 AEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKR 178 (343)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (343)
+.+.|+.++.. -..++..+...+ .-.|.++++.+.+.++..+..|.---+..+...
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 33445544332 223333333334 445555555555554444444433333444333
No 312
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=54.35 E-value=15 Score=20.78 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044084 3 SQSKLHYYEKMKSAGIVLDSGCYCQIMEAF 32 (343)
Q Consensus 3 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 32 (343)
.++|...|-+|++..-.++..+|...+..+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777766643335666777777666
No 313
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=54.20 E-value=63 Score=23.80 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=10.0
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 044084 29 MEAFYKIGDSEKVAALFL 46 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~ 46 (343)
+...++.|+.+.+..+++
T Consensus 7 L~~A~~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLK 24 (232)
T ss_dssp HHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 444556666665555543
No 314
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.89 E-value=1.3e+02 Score=27.17 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 044084 27 QIMEAFYKIGDSEKVAALFLECE 49 (343)
Q Consensus 27 ~l~~~~~~~~~~~~a~~~~~~~~ 49 (343)
.++-.|.|+|++++|.++.++..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Confidence 35566778888888888876654
No 315
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.80 E-value=54 Score=22.89 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCCCC-hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHH
Q 044084 78 EILKFFRDMKEKGILED-PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLE 131 (343)
Q Consensus 78 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (343)
.+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 37888999988876544 4467777788888999999999999999888777543
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.24 E-value=54 Score=22.48 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=20.7
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc
Q 044084 121 AEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS 164 (343)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (343)
+.+.|+.++. .-..++..+...+..-.|.++++.+.+.++..+
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is 55 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMS 55 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCC
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCC
Confidence 4455555443 223334444444455556666666655544333
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.02 E-value=74 Score=27.55 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHhhccCcHHHHHHHHHHHHhc
Q 044084 23 GCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSS---THMYKILCDSLGKSGRAFEILKFFRDMKEK 89 (343)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 89 (343)
..+|.+++.|...+.++.|..+..+..- +....++ ...+--+.+.+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4688899999999999999999998742 1111111 112223466777889999999999888765
No 318
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.61 E-value=40 Score=24.13 Aligned_cols=154 Identities=10% Similarity=-0.001 Sum_probs=61.4
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCcHhH
Q 044084 71 GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEV--FLKLVLMYIEEGMVEK 148 (343)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~ 148 (343)
+..|+.+....++..-...--..+..-++ .+...+..|+.+. ++.+.+.|..++... -...+...+..|+.+-
T Consensus 13 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 87 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIEI----AKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87 (201)
T ss_dssp HHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 45666666655554221000011222222 3334445666544 344445555443211 1122334455666655
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcC-CC---CCHhhHHHHHHHHHccCChhHHHHHHH
Q 044084 149 TLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQG-CI---PGQVTYASIINAYCRIGLYSKAEKVFI 224 (343)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~ 224 (343)
+..+++.....--..+..-.+.+ ...+..|+.+-+..+++ .| .. .+..-.+.+..+.........-.++.+
T Consensus 88 ~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 88 LAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 55554332100001111112222 23344566554444433 33 22 222233344443332222333355666
Q ss_pred HHHHcCCCcC
Q 044084 225 EMQQKGFDKC 234 (343)
Q Consensus 225 ~~~~~~~~~~ 234 (343)
.+.+.|..++
T Consensus 163 ~Ll~~ga~~~ 172 (201)
T 3hra_A 163 LLMENGADQS 172 (201)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHCCCCCC
Confidence 6666665554
No 319
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=50.44 E-value=39 Score=20.27 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=27.8
Q ss_pred HHhcCCCCChHhHHHHHHHHhccc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044084 86 MKEKGILEDPSVYASLICSFASIA-EVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEG 144 (343)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (343)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555544433 23344444433 34455556666555544445555555555555444
No 320
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=50.18 E-value=39 Score=20.24 Aligned_cols=58 Identities=9% Similarity=0.097 Sum_probs=28.8
Q ss_pred HHhCCCCCCCchHHHHHHHHHHhhccC-cHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhccc
Q 044084 48 CESRKLDLTPSSTHMYKILCDSLGKSG-RAFEILKFFRDMKEKGILEDPSVYASLICSFASIA 109 (343)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (343)
+.+.|...+ ..-..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t----~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVT----LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCC----HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcC----HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445555544 22344455555443 44556666666665544444444444444444433
No 321
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.96 E-value=43 Score=25.15 Aligned_cols=85 Identities=9% Similarity=0.040 Sum_probs=58.3
Q ss_pred HHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 7 LHYYEKMKSA-----GIVLDSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 7 ~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
..++++..+. ...-|.......+. |++. .+.+.++|..|..+++-..- ...|......+-..|++.+|.+
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~--AlfYe~wA~~lE~~g~~~~A~~ 171 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQES--SIFYEEYANYFESRGLFQKADE 171 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTB--HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhH--HHHHHHHHHHHHHcCCHHHHHH
Confidence 3455555542 13334443333333 3332 25677899999998887653 4678888889999999999999
Q ss_pred HHHHHHhcCCCCChH
Q 044084 82 FFRDMKEKGILEDPS 96 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~ 96 (343)
+|+.-++.+-.|-..
T Consensus 172 Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 172 VYQKGKRMKAKPFLR 186 (223)
T ss_dssp HHHHHHHHTCBSHHH
T ss_pred HHHHHHHcCCccHHH
Confidence 999999988887653
No 322
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=49.92 E-value=39 Score=25.06 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=38.3
Q ss_pred hcCCcHHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhh--HHHHHHHHHccCC
Q 044084 176 SKRRAYWAAVKVYEQLISQGCIPGQV---TYASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVA--YSSMVAMYGKTGR 250 (343)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 250 (343)
+..|+.+ +++.+.+.|..++.. -.+ .+...++.|+.+-+ +.+.+.|..++... -.+-+......|+
T Consensus 152 ~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 152 AFSGCVD----IAEILLAAKCDLHAVNIHGDS-PLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp HHHCCHH----HHHHHHTTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred HHCCCHH----HHHHHHHcCCCCCCcCCCCCC-HHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHH
Confidence 3445544 444445555444322 122 23334555665443 33444554443221 1123344456777
Q ss_pred hHHHHHHHHHHhh
Q 044084 251 IRDAMRLVAKMKP 263 (343)
Q Consensus 251 ~~~a~~~~~~m~~ 263 (343)
...+.++.+.+.+
T Consensus 223 ~~~~~~l~~~l~d 235 (237)
T 3b7b_A 223 VWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 7777777777665
No 323
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=49.79 E-value=74 Score=23.34 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=11.4
Q ss_pred HHHhcCCcHHHHHHHHHHHHH
Q 044084 173 NGFSKRRAYWAAVKVYEQLIS 193 (343)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~ 193 (343)
..|.+.|.+++|.++|++...
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHccchHHHHHHHHHHhc
Confidence 345556666666666665443
No 324
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.68 E-value=1.4e+02 Score=26.57 Aligned_cols=115 Identities=8% Similarity=-0.002 Sum_probs=70.4
Q ss_pred cHhHHHHHHHHHHhcCCCCchhh----HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCChhHHH
Q 044084 145 MVEKTLEVVESMKNAELNISDCI----SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGLYSKAE 220 (343)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 220 (343)
+.+.|...+........ .+... +..+.......+...++...+...... .++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 67888888888765432 23222 223333444455344555566655443 234434444555556779999999
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 221 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
..|..|.... .......--+.+++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9998876532 12233445566677888999999999888864
No 325
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=49.02 E-value=80 Score=23.53 Aligned_cols=68 Identities=16% Similarity=0.056 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHcCCCcCh--h-----hHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccC
Q 044084 216 YSKAEKVFIEMQQKGFDKCV--V-----AYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAKN 285 (343)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~--~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 285 (343)
++.|..+|+.+.+....++. . .--..+..|.+.|.+++|.+++++.... .|+..-...-+....+.++
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhccC
Confidence 45566666666654311111 0 1113345677888888888888888765 3343334333333333333
No 326
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=48.87 E-value=77 Score=23.29 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=38.7
Q ss_pred HHHHh---hccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC-----HHHHHHHHHHHHHcCCC
Q 044084 66 LCDSL---GKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE-----VKVAEELFKEAEEKGML 127 (343)
Q Consensus 66 li~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 127 (343)
+|+++ .+-.+++.|+-++.+|++.| .|....-..++.+.-..|. ...|...++.....|.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 44444 34578999999999999998 6655444555555544443 34455556666666654
No 327
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.66 E-value=1e+02 Score=24.55 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=38.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCC--hHHHHHHHHHHhhCCCCchHHH
Q 044084 203 YASIINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR--IRDAMRLVAKMKPKGCEPNVWI 272 (343)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 272 (343)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456677777788888888887776532111 12333344444444332 3445667777766555544433
No 328
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=48.05 E-value=41 Score=25.39 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=29.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHhhc--cCcHHHHHHHHHHH
Q 044084 28 IMEAFYKIGDSEKVAALFLECESRKLDLTP----SSTHMYKILCDSLGK--SGRAFEILKFFRDM 86 (343)
Q Consensus 28 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~li~~~~~--~~~~~~a~~~~~~~ 86 (343)
.+...++.|+.+.+..+++.+.+.+..++. .+..-++.|..+... .|+.+-+..+++.-
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC
Confidence 344556677777776677666666554442 122223333333322 25555555555443
No 329
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=48.05 E-value=91 Score=25.54 Aligned_cols=132 Identities=9% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhcC-CCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAE-LNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAY 210 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 210 (343)
....++.-|...|+.++|.+.++++.... ..+...........=.+...-+.+..++..+...++-+.......+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_pred HccC----ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 044084 211 CRIG----LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 211 ~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 263 (343)
.... |...|..++..+...-+.-+..+.+.+...+..-+...-...+++.+.+
T Consensus 94 e~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k 150 (364)
T 3l6a_A 94 DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAK 150 (364)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHH
T ss_pred hhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHH
No 330
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=47.61 E-value=46 Score=20.97 Aligned_cols=36 Identities=3% Similarity=0.026 Sum_probs=19.6
Q ss_pred cHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHH
Q 044084 145 MVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (343)
+.+.|.++++.+...|.. +|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHHHH
Confidence 455666666666555532 455566665554554443
No 331
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=47.41 E-value=73 Score=22.57 Aligned_cols=51 Identities=6% Similarity=0.084 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCc
Q 044084 114 AEELFKEAEEKGMLRD-LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNIS 164 (343)
Q Consensus 114 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (343)
...+|..|...|+... ...|......+-..|++.+|.++|..-.+.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5566777776665433 44556666666667777777777777666665553
No 332
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=46.83 E-value=1.6e+02 Score=26.28 Aligned_cols=23 Identities=13% Similarity=-0.210 Sum_probs=14.8
Q ss_pred HHHHHccCChHHHHHHHHHHhhC
Q 044084 242 VAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
+..+...|....|...+..+...
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChhhHHHHHHHHHhc
Confidence 34456677777777777666553
No 333
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.61 E-value=55 Score=26.48 Aligned_cols=65 Identities=11% Similarity=0.168 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC-cHHHHHHHHHHHHHcCCC
Q 044084 132 VFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR-AYWAAVKVYEQLISQGCI 197 (343)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~ 197 (343)
-...++.-|...|+.++|.+.++++..... -...+...+..++-+.. .-+.+.+++..+.+.|+-
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 356778888899999999988888753222 11122333333333222 235566677777766543
No 334
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=46.12 E-value=24 Score=25.78 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=11.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 044084 30 EAFYKIGDSEKVAALFLECES 50 (343)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~ 50 (343)
..|.+.|.+++|.++|++.-.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHccchHHHHHHHHHHhc
Confidence 345566666666666655433
No 335
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=45.11 E-value=65 Score=23.64 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=7.9
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 044084 29 MEAFYKIGDSEKVAALFL 46 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~ 46 (343)
+...++.|+.+....+++
T Consensus 10 l~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 10 ICNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 333444444444444443
No 336
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.47 E-value=96 Score=23.13 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=14.1
Q ss_pred HHHhcCCcHHHHHHHHHHHHHc
Q 044084 173 NGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
..|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3456667777777777666554
No 337
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.39 E-value=62 Score=26.89 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHH
Q 044084 7 LHYYEKMKSAGIVLDSG--CYCQIMEAFYKIGDSEKVAALFL 46 (343)
Q Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 46 (343)
.++++.+.+.|..|+.. .....+...++.|+.+-+..+++
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 35666777777655533 22344556667777766655554
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=44.14 E-value=26 Score=23.57 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=34.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccc
Q 044084 295 VISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIE 341 (343)
Q Consensus 295 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 341 (343)
++..+...+..-.|.++++.+.+.+...+..|..-.++.+.+.|-+.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 44455555666778999999999887788888666777888777654
No 339
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=44.08 E-value=86 Score=22.45 Aligned_cols=115 Identities=7% Similarity=0.065 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHH
Q 044084 37 DSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEE 116 (343)
Q Consensus 37 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 116 (343)
..+.+..+++.+.+.|...+ ...-...++...+.|.+ ....+-.++.+.|+.++ +....+..+......+.|..
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD---~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~ 121 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLIND---KNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVT 121 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCH---HHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHH
Confidence 34566677788888887655 33334445554443322 23455667777777532 22222222211222455555
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcC-cHhHHHHHHHHHH
Q 044084 117 LFKEAEEK-GMLRDLEVFLKLVLMYIEEG-MVEKTLEVVESMK 157 (343)
Q Consensus 117 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 157 (343)
+.++-... ...++......++..+.+.| .++.+..+++.+.
T Consensus 122 l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 122 LAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 55543332 11223344566777777777 3566666776654
No 340
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.70 E-value=90 Score=22.58 Aligned_cols=109 Identities=11% Similarity=-0.033 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 044084 128 RDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASII 207 (343)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 207 (343)
++..+-...+.++.+.++.+ +...+..+... ++...-...+.++...++.+ +...+..+.+ .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALKD---EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHhC---CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 45555555555555555532 23333333321 33333333444444444432 3333333332 24444545555
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHcc
Q 044084 208 NAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 248 (343)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (343)
.++.+.+. +++...+..+.+. ++..+-...+.++...
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 55555554 3344444444442 2344444444444443
No 341
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.05 E-value=44 Score=24.65 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=11.6
Q ss_pred HHHhhccCcHHHHHHHHHH
Q 044084 67 CDSLGKSGRAFEILKFFRD 85 (343)
Q Consensus 67 i~~~~~~~~~~~a~~~~~~ 85 (343)
+...+..|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444566777776666654
No 342
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=43.00 E-value=24 Score=24.15 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=33.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcccccc
Q 044084 295 VISAYNMAREFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQIE 341 (343)
Q Consensus 295 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 341 (343)
++..+...+..-.|.++++.+.+.+...+..|..--++.+.+.|-+.
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34444455556678899999998888888888666777777777654
No 343
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=42.43 E-value=1.3e+02 Score=24.10 Aligned_cols=219 Identities=11% Similarity=0.017 Sum_probs=101.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHH
Q 044084 21 DSGCYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYAS 100 (343)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (343)
|..-+ ..+...+..|+.+-+..+++ .+..++..+..-++. +...+..|+.+-+ +.+.+.|..++...-..
T Consensus 17 d~~g~-t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENM-EKIHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTA-LHLACKFGCVDTA----KYLASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHH-HHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCH-HHHHHHHCCHHHH----HHHHHHCCCCCCBTTBC
T ss_pred CCCCC-CHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcH-HHHHHHcCCHHHH----HHHHHCCCCccccCCCC
Confidence 34334 44555667788776666654 454444322222223 3333455665443 44444454444322223
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHcCCCCCHHH-------------------HHHHHHHHHhcC--cHhHHHHHHHHHHhc
Q 044084 101 LICSFASIAEVKVAEELFKEAEEKGMLRDLEV-------------------FLKLVLMYIEEG--MVEKTLEVVESMKNA 159 (343)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 159 (343)
.+...+..|+.+-+..+++.....|..++... -.+.+...+..| +.+-+..+++.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~---- 162 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL---- 162 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH----
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc----
Confidence 44455667888888777776555554332200 112344455566 54444444433
Q ss_pred CCCCch---hhHHHHHHHHhcCCcHHHHHHHHHHHHH-cCCCC---CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 044084 160 ELNISD---CISCVIVNGFSKRRAYWAAVKVYEQLIS-QGCIP---GQVTYASIINAYCRIGLYSKAEKVFIEMQQKGFD 232 (343)
Q Consensus 160 ~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (343)
|..++. .-.+.|.. .+..|+.+-+..+++.-.. .+..+ +..-.+.| ...+..|+.+- .+.+.+.|..
T Consensus 163 ga~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~gad 236 (364)
T 3ljn_A 163 GASPTAKDKADETPLMR-AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDV----AMRFVEMGID 236 (364)
T ss_dssp TCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHH----HHHHHTTTCC
T ss_pred CCCCcccCCCCCCHHHH-HHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHH----HHHHHHcCCC
Confidence 433322 22333433 3456776655555443221 00001 11222223 33455666543 4444555655
Q ss_pred cChh---hHHHHHHHHHccCChHHHHHHHHH
Q 044084 233 KCVV---AYSSMVAMYGKTGRIRDAMRLVAK 260 (343)
Q Consensus 233 ~~~~---~~~~l~~~~~~~~~~~~a~~~~~~ 260 (343)
++.. -.+.| ...+..|+.+-+..+++.
T Consensus 237 ~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 237 VNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 4432 22233 333455776666555554
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.36 E-value=42 Score=22.55 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=15.9
Q ss_pred cCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhccc
Q 044084 248 TGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK 284 (343)
Q Consensus 248 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 284 (343)
.+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444444444444433334444444444444433
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=41.73 E-value=38 Score=23.11 Aligned_cols=42 Identities=19% Similarity=0.125 Sum_probs=17.6
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhccc
Q 044084 243 AMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRAK 284 (343)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 284 (343)
..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333333334444444444444433334444433344444333
No 346
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.54 E-value=88 Score=21.86 Aligned_cols=99 Identities=10% Similarity=0.116 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHH
Q 044084 39 EKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELF 118 (343)
Q Consensus 39 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 118 (343)
+.+..+++.+.+.|...+ ...-...++...+.| .....+-.++...|+.++. ....+..+.. ...+.|..+.
T Consensus 47 ~~i~~vl~~l~~~g~ldD---~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~~--i~~al~~~~~-d~~~~a~~l~ 118 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDD---SRFVARFIASRSRKG--YGPARIRQELNQKGISREA--TEKAMREADI-DWAALARDQA 118 (159)
T ss_dssp HHHHHHHHHHHHTTSCCH---HHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHHH--HHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCH---HHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHHH--HHHHHHHcCH-hHHHHHHHHH
Confidence 344455555566655544 222233344433333 1234455566666664322 2222222211 2233444444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 044084 119 KEAEEKGMLRDLEVFLKLVLMYIEEGM 145 (343)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (343)
..-.....+++......++..+.+.|-
T Consensus 119 ~kk~~~~~~~~~~~~~K~~~~L~rrGF 145 (159)
T 3c1d_A 119 TRKYGEPLPTVFSEKVKIQRFLLYRGY 145 (159)
T ss_dssp HHHHCSSCCCSHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 432211112344455666666666663
No 347
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=40.59 E-value=55 Score=23.18 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHH
Q 044084 134 LKLVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445666666777777777777665
No 348
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=40.55 E-value=98 Score=22.10 Aligned_cols=18 Identities=6% Similarity=0.104 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 044084 182 WAAVKVYEQLISQGCIPG 199 (343)
Q Consensus 182 ~~a~~~~~~~~~~~~~p~ 199 (343)
....++.+.+.+.|..++
T Consensus 91 ~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHTTCCSS
T ss_pred hhHHHHHHHHHHCCCCCC
Confidence 333445555555554443
No 349
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=40.54 E-value=1.3e+02 Score=23.68 Aligned_cols=36 Identities=6% Similarity=0.037 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCCCChhh---HHHHHHHHHhcCCHHHHHH
Q 044084 8 HYYEKMKSAGIVLDSGC---YCQIMEAFYKIGDSEKVAA 43 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~ 43 (343)
++.+.+++.|..++... -.+-+...++.|+.+-+.-
T Consensus 39 ~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~ 77 (337)
T 4g8k_A 39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL 77 (337)
T ss_dssp HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHH
Confidence 34555566665554321 1123344455666544433
No 350
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=40.26 E-value=46 Score=23.60 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=12.6
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHH
Q 044084 64 KILCDSLGKSGRAFEILKFFRDMK 87 (343)
Q Consensus 64 ~~li~~~~~~~~~~~a~~~~~~~~ 87 (343)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555555543
No 351
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=39.63 E-value=77 Score=27.73 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=31.0
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCCcHHHH
Q 044084 109 AEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRRAYWAA 184 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (343)
.+.........++..+=+--+..-...++..|.+.|-.+.|.++++.+-..-+. +...+ .-+..|++.|+++.+
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 344445555555554433335556666777777777777777777777655442 22334 444556677766554
No 352
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=39.33 E-value=1.2e+02 Score=22.58 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=42.1
Q ss_pred HHHHHhh---ccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC-----HHHHHHHHHHHHHcCCC
Q 044084 65 ILCDSLG---KSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE-----VKVAEELFKEAEEKGML 127 (343)
Q Consensus 65 ~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 127 (343)
.+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+.-..|. ...|...++.....|.+
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455554 457899999999999999877665555555555544443 44556666666666764
No 353
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=39.03 E-value=26 Score=26.95 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=31.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHhh--ccCcHHHHHHHHHH
Q 044084 28 IMEAFYKIGDSEKVAALFLECESRKLDLTPS----STHMYKILCDSLG--KSGRAFEILKFFRD 85 (343)
Q Consensus 28 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~li~~~~--~~~~~~~a~~~~~~ 85 (343)
.+...++.|+.+.+..+++...+.+...... +..-++.|..++. +.|+.+-+..+++.
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 3445567788888888887776655433210 1122334444443 34666666555554
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.56 E-value=2.6e+02 Score=26.48 Aligned_cols=125 Identities=7% Similarity=-0.014 Sum_probs=74.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCchH------HHHHHHHHH
Q 044084 206 IINAYCRIGLYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNV------WIYNSLMDM 279 (343)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~ 279 (343)
++..+...|..+-+.++. . -.+.++..--.+..+|...|++++|...|++.-. |+.++. .....++..
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 455556666666544432 2 2334454445677889999999999999988753 332111 112223221
Q ss_pred HhcccChhHHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHH----HHHHHHHHHhccc
Q 044084 280 HGRAKNLRQLEKYTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRA----MAGIMVGVFSKLS 338 (343)
Q Consensus 280 ~~~~~~~~~a~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g 338 (343)
... ..-.+.-|..++..+-+.+.++.++++-+...+.--.-|.. .|..+.++.+..|
T Consensus 890 ~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111 11111238899999999999999999988887642222222 3667777766654
No 355
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=37.75 E-value=1.1e+02 Score=24.66 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=18.1
Q ss_pred HHHHcCCCcChhhHHHHHHHHHccCChHHHHHHHHHHhhC
Q 044084 225 EMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMRLVAKMKPK 264 (343)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 264 (343)
.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...
T Consensus 218 hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 218 HFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444444444455555444443
No 356
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.69 E-value=2e+02 Score=24.29 Aligned_cols=119 Identities=17% Similarity=0.134 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC-------CCchh---------
Q 044084 111 VKVAEELFKEAEEK--------GMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL-------NISDC--------- 166 (343)
Q Consensus 111 ~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~--------- 166 (343)
.++...++...... ++..+......+... ..|+..+++.+++.+..... ..+..
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 44555555555542 233456666666555 45777777777776643221 01110
Q ss_pred ---------hHHHHHHHHh---cCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC-----hhHHHHHHHHHHHc
Q 044084 167 ---------ISCVIVNGFS---KRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGL-----YSKAEKVFIEMQQK 229 (343)
Q Consensus 167 ---------~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~ 229 (343)
..-.+++++. +..+++.|..++.+|.+.|..|....-..+..+.-.-|. ...|...++.....
T Consensus 245 ~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~ 324 (447)
T 3pvs_A 245 SARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRV 324 (447)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHS
T ss_pred hhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHh
Confidence 0112233332 346777777777777777765544443444444443343 22344444555555
Q ss_pred CC
Q 044084 230 GF 231 (343)
Q Consensus 230 ~~ 231 (343)
|.
T Consensus 325 g~ 326 (447)
T 3pvs_A 325 GP 326 (447)
T ss_dssp CH
T ss_pred CC
Confidence 53
No 357
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.85 E-value=64 Score=21.35 Aligned_cols=45 Identities=13% Similarity=-0.077 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhc
Q 044084 42 AALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEK 89 (343)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 89 (343)
.-+|+.+....+.+. +..--.-+..+...++++.|.++...+...
T Consensus 46 ~~LfdkLn~~~Ls~~---v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 46 ALLREQWAGGKLSIP---VKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHTCSCHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 345666666666332 333333345556788999999999888764
No 358
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.69 E-value=1.2e+02 Score=21.39 Aligned_cols=52 Identities=10% Similarity=-0.109 Sum_probs=33.7
Q ss_pred ccCChhHHHHHHHHHHHcCCCc--ChhhHHHHHH------HHHccCChHHHHHHHHHHhh
Q 044084 212 RIGLYSKAEKVFIEMQQKGFDK--CVVAYSSMVA------MYGKTGRIRDAMRLVAKMKP 263 (343)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~a~~~~~~m~~ 263 (343)
..|++-+|-++|+.+-.....+ ....|..||+ ...+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477878877777776654334 3445555555 23456888888888877754
No 359
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=34.35 E-value=86 Score=27.43 Aligned_cols=90 Identities=7% Similarity=0.008 Sum_probs=43.9
Q ss_pred ChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhH
Q 044084 21 DSGCYCQIMEAFYK--IGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVY 98 (343)
Q Consensus 21 ~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (343)
+...|..-+..+.. ..+.........++..+-.-.+ ..--..++..|.+.|-.+.|.++++.+-..-+. +...+
T Consensus 478 ~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~T---ndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g 553 (570)
T 3f3f_C 478 DKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVT---NDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII 553 (570)
T ss_dssp CTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCS---HHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------
T ss_pred CCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH
Confidence 33446666665554 3455666667777665543222 355677889999999999999999988766443 44455
Q ss_pred HHHHHHHhcccCHHHHH
Q 044084 99 ASLICSFASIAEVKVAE 115 (343)
Q Consensus 99 ~~l~~~~~~~~~~~~a~ 115 (343)
..+..|+++|+++.+.
T Consensus 554 -eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 554 -ESIANFSRAGKYELVK 569 (570)
T ss_dssp -----------------
T ss_pred -HHHHHHHHcCChhhcc
Confidence 5667888988887654
No 360
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=34.20 E-value=2.1e+02 Score=24.13 Aligned_cols=55 Identities=7% Similarity=-0.071 Sum_probs=36.9
Q ss_pred cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc-----HhHHHHHHHHHHhcCC
Q 044084 107 SIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGM-----VEKTLEVVESMKNAEL 161 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 161 (343)
+..+.+.|...+.+|.+.|..|....-..+..+.-..|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 446888888889999888876655555555555555554 3456666666666665
No 361
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=34.04 E-value=1.1e+02 Score=22.41 Aligned_cols=21 Identities=5% Similarity=-0.028 Sum_probs=9.8
Q ss_pred HhcccCHHHHHHHHHHHHHcC
Q 044084 105 FASIAEVKVAEELFKEAEEKG 125 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~ 125 (343)
.+..|+.+.+..+++.+.+.|
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC
Confidence 334445554444444444444
No 362
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=33.71 E-value=1.1e+02 Score=20.79 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=3.9
Q ss_pred hcCcHhHHHH
Q 044084 142 EEGMVEKTLE 151 (343)
Q Consensus 142 ~~~~~~~a~~ 151 (343)
+.|+.+.+..
T Consensus 17 ~~g~~~~v~~ 26 (165)
T 3twr_A 17 KAGDVETVKK 26 (165)
T ss_dssp HHTCHHHHHH
T ss_pred HhCCHHHHHH
Confidence 3344433333
No 363
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=33.67 E-value=1.2e+02 Score=25.03 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChH--hHHHHHHH
Q 044084 27 QIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPS--VYASLICS 104 (343)
Q Consensus 27 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 104 (343)
+.+...+..|+.+-+..+++ .+..++..+.... +.+...+..|+.+-+..++ +.|..++.. .-.+.+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVE-TPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHC 86 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHH
Confidence 34556677888876666654 4444432211111 2233344566665444443 344333221 11123444
Q ss_pred HhcccCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCcHhHHHHHHH
Q 044084 105 FASIAEVKVAEELFKEAEEKGMLRDLE--VFLKLVLMYIEEGMVEKTLEVVE 154 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 154 (343)
.+..|+.+-+.- +.+.|..++.. .-.+.+...+..|+.+.+..+++
T Consensus 87 A~~~g~~~~v~~----Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 87 AARIGHTNMVKL----LLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHTCHHHHHH----HHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHCCCHHHHHH----HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 456666654433 34444433211 01112333445566555444443
No 364
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.49 E-value=1.9e+02 Score=23.24 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=39.4
Q ss_pred HHHHHHHhcccChhHHHh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHH-HHHHHHHHhcc
Q 044084 274 NSLMDMHGRAKNLRQLEK---YTTVISAYNMAREFDMCVKFYNEFRMNGGVIDRAM-AGIMVGVFSKL 337 (343)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~ 337 (343)
+.-+.+|...-+++-.-. ....+....+.+++..|-.+-+++++.+..|+... -.-++..+-+.
T Consensus 189 ~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 189 MLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 334445554444443333 55566777788999999999999998876555543 34444454443
No 365
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.36 E-value=1.4e+02 Score=21.87 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=35.3
Q ss_pred HHHHhh---ccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccC-----HHHHHHHHHHHHHcC
Q 044084 66 LCDSLG---KSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAE-----VKVAEELFKEAEEKG 125 (343)
Q Consensus 66 li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 125 (343)
+|+++. +-.+++.|+-++.+|++.|-.|....-..++.+.-..|. ...|...++.....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 455553 457899999999999998876655444444444444332 233444444444444
No 366
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=33.27 E-value=72 Score=23.97 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=11.1
Q ss_pred HhcccCHHHHHHHHHHHHHcCC
Q 044084 105 FASIAEVKVAEELFKEAEEKGM 126 (343)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~ 126 (343)
.+..|+.+.+..+++.+.+.|.
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHcCC
Confidence 3444555555555555555443
No 367
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=32.11 E-value=91 Score=19.27 Aligned_cols=32 Identities=3% Similarity=-0.002 Sum_probs=13.7
Q ss_pred CcHhHHHHHHHHHHhcCCCCchhhHHHHHHHHhcCC
Q 044084 144 GMVEKTLEVVESMKNAELNISDCISCVIVNGFSKRR 179 (343)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (343)
...++|..+++.+...|. ..|..++.++...+
T Consensus 50 t~~~kar~Lld~l~~kG~----~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDN----DSYVSFYNALLHEG 81 (94)
T ss_dssp SHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHcCH----HHHHHHHHHHHHcC
Confidence 344445555544443331 13444444444433
No 368
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.38 E-value=61 Score=21.94 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=13.0
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 044084 28 IMEAFYKIGDSEKVAALFLE 47 (343)
Q Consensus 28 l~~~~~~~~~~~~a~~~~~~ 47 (343)
.+...++.|+.+.+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHh
Confidence 34455667777777777665
No 369
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=30.35 E-value=2.2e+02 Score=23.20 Aligned_cols=94 Identities=6% Similarity=0.070 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 044084 168 SCVIVNGFSKRRAYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIGL--YSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 245 (343)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (343)
...++.-|...++.++|...++++....+. ...+...+..++-+.++ .+....++..+...|+-+.......+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 566777788888888888888887632211 22334445555554432 345667777777766544444333333333
Q ss_pred HccC----ChHHHHHHHHHHh
Q 044084 246 GKTG----RIRDAMRLVAKMK 262 (343)
Q Consensus 246 ~~~~----~~~~a~~~~~~m~ 262 (343)
.... +...|..++.++.
T Consensus 299 ~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 299 NEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHH
Confidence 3332 2334555544443
No 370
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.27 E-value=2.7e+02 Score=24.15 Aligned_cols=65 Identities=9% Similarity=0.059 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCC-CCchh--hHH-HHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 130 LEVFLKLVLMYIEEGMVEKTLEVVESMKNAEL-NISDC--ISC-VIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
...+|.+++.|...+.++.|..+..+..-... .++.. .|. -+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 57789999999999999999999998852211 11111 121 2345566688999999999988765
No 371
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.62 E-value=3.6e+02 Score=25.40 Aligned_cols=48 Identities=6% Similarity=-0.195 Sum_probs=22.0
Q ss_pred cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 044084 107 SIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (343)
+.|..+.-..++++..... +..--..++.+++...+.....++++...
T Consensus 738 ~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 738 AQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 3444444444444444431 23333445555555555555555554443
No 372
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.28 E-value=1.9e+02 Score=22.02 Aligned_cols=18 Identities=6% Similarity=-0.167 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHhcCc
Q 044084 128 RDLEVFLKLVLMYIEEGM 145 (343)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~ 145 (343)
++..+-...+.++...|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 455555555666665555
No 373
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.12 E-value=1.8e+02 Score=21.79 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCC
Q 044084 112 KVAEELFKEAEEKGMLRD-LEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNI 163 (343)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (343)
+....+|..|...|+... ...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455677777777666543 5556666677777777777777777777666555
No 374
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.71 E-value=3.8e+02 Score=25.39 Aligned_cols=48 Identities=8% Similarity=0.018 Sum_probs=33.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHccC
Q 044084 202 TYASIINAYCRIGLYSKAEKVFIEMQQKGFDKC----VVAYSSMVAMYGKTG 249 (343)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~ 249 (343)
=|..+++.+-+.+.++.+.++-+...+.--+-| ...|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 467788888899999988888887776421222 236777777766554
No 375
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.34 E-value=41 Score=25.47 Aligned_cols=39 Identities=15% Similarity=0.033 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCCCChhh----------------HHHHHHHHHhcCCHHHHHHHH
Q 044084 7 LHYYEKMKSAGIVLDSGC----------------YCQIMEAFYKIGDSEKVAALF 45 (343)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~ 45 (343)
.++.+.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 106 ~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 345666777776655442 234455556677765544444
No 376
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=27.26 E-value=1e+02 Score=19.45 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhh
Q 044084 36 GDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLG 71 (343)
Q Consensus 36 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 71 (343)
-..+++..+++.+..+|. .+|..++.++.
T Consensus 49 t~~~k~~~Lld~L~~rG~-------~Af~~F~~aL~ 77 (100)
T 3crd_A 49 TGLRKTMLLLDILPSRGP-------KAFDTFLDSLQ 77 (100)
T ss_dssp SSHHHHHHHHHHTTTSCS-------SCHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHCH-------HHHHHHHHHHH
Confidence 345666666666655552 23555555554
No 377
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=26.85 E-value=64 Score=19.01 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccccc
Q 044084 304 EFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQI 340 (343)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 340 (343)
..++|...|.+|+...-.+...+|...+..+..-.++
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 49 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccc
Confidence 4678999999987654444556788888877766555
No 378
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=26.73 E-value=60 Score=21.60 Aligned_cols=50 Identities=8% Similarity=0.043 Sum_probs=25.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHH
Q 044084 63 YKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSVYASLICSFASIAEVKVAE 115 (343)
Q Consensus 63 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 115 (343)
|--.|...+.+++.+-|.++++-..+.| +...|.+++-.|...=++|-++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 4444555555555555555555555544 4444555555554444444443
No 379
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.34 E-value=1.4e+02 Score=19.67 Aligned_cols=42 Identities=5% Similarity=-0.053 Sum_probs=22.3
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHhcccCHHHHHHHHHHHHH
Q 044084 82 FFRDMKEKGILEDPSVYASLICSFASIAEVKVAEELFKEAEE 123 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (343)
+|+.+....+.|+...--.-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444544433322333444566777777777776665
No 380
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.92 E-value=1.8e+02 Score=20.54 Aligned_cols=49 Identities=6% Similarity=-0.034 Sum_probs=24.5
Q ss_pred cCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCcHhHHHHHHHHHH
Q 044084 109 AEVKVAEELFKEAEEKGMLR--DLEVFLKLVL-M-----YIEEGMVEKTLEVVESMK 157 (343)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~ 157 (343)
|++-+|.++++.+=.....+ ....|..||. . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555554433333 3344444544 1 234556666666665543
No 381
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.75 E-value=4.3e+02 Score=24.93 Aligned_cols=154 Identities=11% Similarity=0.054 Sum_probs=79.3
Q ss_pred HHHHHHhcccC---HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchhhHHHHH
Q 044084 100 SLICSFASIAE---VKVAEELFKEAEEKG----MLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDCISCVIV 172 (343)
Q Consensus 100 ~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (343)
.++...|..|. .+.|.+.|+.....+ +.||. ...+...-.+.|..++-..+++....... ..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~~---~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQL---VNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCCS---HHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccCC---HHHHHHHH
Confidence 45566677766 345666777665432 34442 22333334455665655566666665432 22345677
Q ss_pred HHHhcCCcHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc------CCCcChhhHHHHHHHH
Q 044084 173 NGFSKRRAYWAAVKVYEQLISQG-CIPGQVTYASIINAYCRIGLYSKAEKVFIEMQQK------GFDKCVVAYSSMVAMY 245 (343)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~ 245 (343)
.+++...+.....++++...... +++. . ...++.+... +......+++-+.+. .+......+..++...
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d-~~~~~~~v~~--n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQ-D-ATSTINSIAS--NVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGG-G-HHHHHHHHHH--STTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchh-h-HHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 88888888888888887766533 2222 2 2233344332 222223333333332 1223344567777766
Q ss_pred HccCChHHHHHHHHHHh
Q 044084 246 GKTGRIRDAMRLVAKMK 262 (343)
Q Consensus 246 ~~~~~~~~a~~~~~~m~ 262 (343)
...-.-++-.+-++...
T Consensus 842 ~~~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFK 858 (909)
T ss_dssp HTTCCSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 65544444444444443
No 382
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=25.57 E-value=1.5e+02 Score=19.74 Aligned_cols=29 Identities=7% Similarity=-0.063 Sum_probs=12.1
Q ss_pred CCCchHHHHHHHHHHhhccCcHHHHHHHH
Q 044084 55 LTPSSTHMYKILCDSLGKSGRAFEILKFF 83 (343)
Q Consensus 55 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 83 (343)
|.+.+...+...+..+...++.+++..++
T Consensus 55 P~~~DV~~l~~yL~~lVeek~Lek~~~vl 83 (124)
T 3vu7_H 55 PMEEDILQVVKYCTDLIEEKDLEKLDLVI 83 (124)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 33333444444444444444444444433
No 383
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=25.47 E-value=87 Score=16.89 Aligned_cols=15 Identities=7% Similarity=0.202 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhCC
Q 044084 38 SEKVAALFLECESRK 52 (343)
Q Consensus 38 ~~~a~~~~~~~~~~~ 52 (343)
+.+|.++++.+.+.|
T Consensus 9 v~RaiELle~lq~sg 23 (53)
T 1zl8_A 9 VQRILELMEHVQKTG 23 (53)
T ss_dssp HHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHcC
Confidence 334444444444433
No 384
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=25.34 E-value=1e+02 Score=20.39 Aligned_cols=30 Identities=7% Similarity=0.105 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 044084 111 VKVAEELFKEAEEKGML-RDLEVFLKLVLMY 140 (343)
Q Consensus 111 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 140 (343)
+++|.+.+..|++.-+. -.+..||..+..+
T Consensus 43 y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~L 73 (120)
T 1q2z_A 43 FMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 73 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 44444444444432221 1344455444443
No 385
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.35 E-value=1.7e+02 Score=24.87 Aligned_cols=64 Identities=6% Similarity=-0.010 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhcCCCCchh--------hHH-HHHHHHhcCCcHHHHHHHHHHHHHc
Q 044084 131 EVFLKLVLMYIEEGMVEKTLEVVESMKNAELNISDC--------ISC-VIVNGFSKRRAYWAAVKVYEQLISQ 194 (343)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (343)
...+.|.+.|.+.++.+.+..+++.+...+..|+.. +|. -+...+...+++.+|.+.+.+..+.
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 346778899999999999999999998776533322 222 2344556788999999888877654
No 386
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=24.19 E-value=2.3e+02 Score=21.27 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHH
Q 044084 29 MEAFYKIGDSEKVAALF 45 (343)
Q Consensus 29 ~~~~~~~~~~~~a~~~~ 45 (343)
+...+..|+.+-+..++
T Consensus 7 L~~A~~~g~~~~v~~Ll 23 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLI 23 (261)
T ss_dssp HHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33445566655544444
No 387
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.51 E-value=1.2e+02 Score=17.59 Aligned_cols=41 Identities=17% Similarity=0.083 Sum_probs=17.5
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044084 99 ASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMY 140 (343)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (343)
+.++..++...-.+.+...+.+..+.|. .+..+|-.-.+..
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~L 46 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGREL 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3344444444444444444444444443 2444444333333
No 388
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=23.30 E-value=1.5e+02 Score=18.72 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=17.3
Q ss_pred CCCCCchHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 044084 53 LDLTPSSTHMYKILCDSLGKSGRAFEILKFFRDM 86 (343)
Q Consensus 53 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 86 (343)
-.|.+.+...+...+..+...++.+++..+++.+
T Consensus 26 ~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l 59 (97)
T 4fjo_A 26 SDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYM 59 (97)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 3444444555555555555555555555554433
No 389
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.29 E-value=2.7e+02 Score=21.83 Aligned_cols=138 Identities=10% Similarity=-0.015 Sum_probs=63.9
Q ss_pred HHHHHHH-hCCCCCCh---hhHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHHHHHH
Q 044084 8 HYYEKMK-SAGIVLDS---GCYCQIMEAFY--KIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAFEILK 81 (343)
Q Consensus 8 ~~~~~~~-~~~~~~~~---~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 81 (343)
++.+.++ +.|..++. .-.+.+...+. ..+..+.. .+.+.+.|..++..+..-.+.| ...+..|..+.+..
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i---~~lLl~~gad~n~~d~~g~t~L-~~a~~~~~~~~v~~ 257 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI---THLLLDHGADVNVRGERGKTPL-ILAVEKKHLGLVQR 257 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHH---HHHHHHTTCCTTCCCGGGCCHH-HHHHHTTCHHHHHH
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHH---HHHHHHCCCCCCCcCCCCCCHH-HHHHHhhhhHHHHH
Confidence 3445555 34544432 22334443332 33344443 3445566666553332223333 33455676665544
Q ss_pred HHHHHHhcCCCCCh---HhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 044084 82 FFRDMKEKGILEDP---SVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEVVESMKN 158 (343)
Q Consensus 82 ~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (343)
+++. .|..++. .-.+.| ...++.|+.+ +.+.+.+.|..++..+ .+...++.|+.+ +.+.+.+
T Consensus 258 Ll~~---~~~~vn~~d~~G~TpL-~~A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~ 322 (337)
T 4g8k_A 258 LLEQ---EHIEINDTDSDGKTAL-LLAVELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLS 322 (337)
T ss_dssp HHTS---TTCCTTCBCTTSCBHH-HHHHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHH
T ss_pred HHHh---cCCcccCcCCCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHH
Confidence 4321 2333322 222233 3344567665 4445566777666432 344455667654 4455566
Q ss_pred cCCCCc
Q 044084 159 AELNIS 164 (343)
Q Consensus 159 ~~~~~~ 164 (343)
.|-.||
T Consensus 323 ~GA~~d 328 (337)
T 4g8k_A 323 HGAKED 328 (337)
T ss_dssp TTCCC-
T ss_pred CcCCCC
Confidence 665554
No 390
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.14 E-value=2.1e+02 Score=20.47 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=32.6
Q ss_pred hHhHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044084 95 PSVYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEE 143 (343)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (343)
...++.++..++...-.+.+.-.+.+..+.|. .+..+|-.-++.+++.
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34467777777777777777777777777775 3666666666666553
No 391
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=22.62 E-value=80 Score=19.25 Aligned_cols=37 Identities=8% Similarity=0.034 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccccc
Q 044084 304 EFDMCVKFYNEFRMNGGVIDRAMAGIMVGVFSKLSQI 340 (343)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 340 (343)
-.++|...|.+|+...-.+...||...+..+..-.++
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRY 51 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCcc
Confidence 4578999999997654444556777777766655444
No 392
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.49 E-value=2.8e+02 Score=22.10 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhcCCCCChHh--HHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044084 61 HMYKILCDSLGKSGRAFEILKFFRDMKEKGILEDPSV--YASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVL 138 (343)
Q Consensus 61 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (343)
.-++.| ...+..|+.+.+..++ +.|..++... -.+.+...+..|+.+-+.- +.+.|..++...-...+.
T Consensus 19 ~g~t~L-~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~ 89 (364)
T 3ljn_A 19 ENMEKI-HVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKY----LASVGEVHSLWHGQKPIH 89 (364)
T ss_dssp HHHHHH-HHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHH----HHHHCCCCCCBTTBCHHH
T ss_pred CCCCHH-HHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHH----HHHCCCCccccCCCCHHH
Confidence 334444 4445667766554444 4555444321 1223445556677654444 444454433312223445
Q ss_pred HHHhcCcHhHHHHHHHHHHhcCCC
Q 044084 139 MYIEEGMVEKTLEVVESMKNAELN 162 (343)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~ 162 (343)
..+..|+.+-+..+++.....+..
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHhccccCCC
Confidence 556778888777777765544443
No 393
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.37 E-value=81 Score=20.98 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=39.1
Q ss_pred hHHHHHHHHhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHhHHHHH
Q 044084 97 VYASLICSFASIAEVKVAEELFKEAEEKGMLRDLEVFLKLVLMYIEEGMVEKTLEV 152 (343)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (343)
.|.-.|...+.+++.+-|+++++-.++.| +...|.+++-.|...=++|-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 35556777778888888888888888766 667777777777777677766664
No 394
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=21.91 E-value=31 Score=19.35 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=10.7
Q ss_pred chhhHHHHHHHHHhCCCCCC
Q 044084 2 NSQSKLHYYEKMKSAGIVLD 21 (343)
Q Consensus 2 ~~~~A~~~~~~~~~~~~~~~ 21 (343)
|++.|...|... +..+||+
T Consensus 34 d~~~A~~~F~~~-~~~IP~e 52 (57)
T 2jp7_A 34 NYEVAIKGFQSS-MNGIPRE 52 (57)
T ss_dssp CSHHHHHHHHHS-TTTSCHH
T ss_pred CHHHHHHHHHHH-HcCCCHH
Confidence 456677777665 3335443
No 395
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.90 E-value=1.7e+02 Score=18.57 Aligned_cols=31 Identities=6% Similarity=0.092 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCCCChHhHHHHHHHHhccc
Q 044084 79 ILKFFRDMKEKGILEDPSVYASLICSFASIA 109 (343)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (343)
+.++.+++..-|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444455555566666655555555554443
No 396
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=20.89 E-value=1.9e+02 Score=23.26 Aligned_cols=111 Identities=5% Similarity=0.057 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHhCC---CCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhccCcHH
Q 044084 4 QSKLHYYEKMKSAG---IVLDSG---CYCQIMEAFYKIGDSEKVAALFLECESRKLDLTPSSTHMYKILCDSLGKSGRAF 77 (343)
Q Consensus 4 ~~A~~~~~~~~~~~---~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 77 (343)
+.|.-+|..+...- ..++.. .....+..+.+.-++ ++++.+.+.++.+. ..++.-++..+.+.=.++
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~---~f~~~W~~~lF~~~~p~~ 261 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYL---QFAFRWMNNLLMREVPLR 261 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHH---HHHHHHHHTTTTTTSCHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchh---hHHHHHHHHHHcccCCHH
Confidence 45666777666531 222221 122223333333332 46666777787655 677778888888888899
Q ss_pred HHHHHHHHHHhcCCCCCh-HhHH--HHHHH----HhcccCHHHHHHHHHHH
Q 044084 78 EILKFFRDMKEKGILEDP-SVYA--SLICS----FASIAEVKVAEELFKEA 121 (343)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~-~~~~--~l~~~----~~~~~~~~~a~~~~~~~ 121 (343)
.+..+|+.+...|..... ..|. +++.. .....++++....++.+
T Consensus 262 ~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 262 CTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp HHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 999999999998755432 2222 22222 12346777777766643
No 397
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.84 E-value=2.9e+02 Score=21.15 Aligned_cols=19 Identities=16% Similarity=0.031 Sum_probs=10.8
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 044084 28 IMEAFYKIGDSEKVAALFL 46 (343)
Q Consensus 28 l~~~~~~~~~~~~a~~~~~ 46 (343)
.+...+..|+.+-+..+++
T Consensus 62 ~L~~Aa~~g~~~~v~~Ll~ 80 (285)
T 3d9h_A 62 PMHEAAIHGHQLSLRNLIS 80 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3455566777655554443
No 398
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.75 E-value=1.2e+02 Score=21.13 Aligned_cols=31 Identities=6% Similarity=0.073 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 044084 110 EVKVAEELFKEAEEKGML-RDLEVFLKLVLMY 140 (343)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 140 (343)
.+++|.+++..|++.-+. -.+..||..+..+
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~L 104 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 345555555555443221 1345555555444
No 399
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=20.70 E-value=2.1e+02 Score=19.43 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=4.2
Q ss_pred cCChhHHHHHH
Q 044084 213 IGLYSKAEKVF 223 (343)
Q Consensus 213 ~~~~~~a~~~~ 223 (343)
.|+.+-+..++
T Consensus 145 ~~~~~~~~~L~ 155 (167)
T 3v31_A 145 LGYRSVQQVIE 155 (167)
T ss_dssp HTCHHHHHHHH
T ss_pred cCcHHHHHHHH
Confidence 34444333333
No 400
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.59 E-value=3.2e+02 Score=23.18 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=15.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 044084 203 YASIINAYCRIGLYSKAEKVFIEMQQKGF 231 (343)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 231 (343)
.+.+.+.|.+.++...+..+++.+...+.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~ 207 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSM 207 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCC
Confidence 34445555555555555555555554443
No 401
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.02 E-value=3.3e+02 Score=21.58 Aligned_cols=46 Identities=11% Similarity=0.228 Sum_probs=30.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcc
Q 044084 237 AYSSMVAMYGKTGRIRDAMRLVAKMKPKGCEPNVWIYNSLMDMHGRA 283 (343)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 283 (343)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~ 213 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLEST 213 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccC
Confidence 3567888898999999999999998632111 223344445555544
Done!